Query 044815
Match_columns 675
No_of_seqs 818 out of 3943
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 07:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-70 2.2E-75 618.2 66.8 552 103-673 92-720 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 8.6E-70 1.9E-74 610.7 60.9 550 100-673 54-618 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.7E-68 8E-73 584.4 69.1 509 155-673 372-909 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-67 2.5E-72 580.4 72.6 478 159-645 412-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8E-63 1.7E-67 541.2 52.8 469 187-672 86-556 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-62 4.5E-67 537.9 55.0 505 100-645 90-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-34 9.2E-39 329.6 75.4 541 111-672 343-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.2E-33 1.3E-37 320.0 75.1 493 162-673 372-866 (899)
9 PRK11447 cellulose synthase su 100.0 1.9E-25 4.2E-30 257.7 69.7 560 97-673 62-740 (1157)
10 PRK11447 cellulose synthase su 100.0 1.3E-24 2.8E-29 250.9 72.7 548 109-673 40-700 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2E-21 4.4E-26 214.0 67.8 538 108-672 55-705 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 7.4E-24 1.6E-28 206.4 38.5 394 258-670 116-516 (966)
13 KOG2002 TPR-containing nuclear 99.9 1.5E-20 3.3E-25 193.3 56.4 546 113-672 146-744 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 1.5E-22 3.3E-27 197.4 39.4 434 163-618 58-499 (966)
15 PRK09782 bacteriophage N4 rece 99.9 1.4E-19 3.1E-24 199.5 66.2 546 97-671 78-738 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-19 2.6E-24 197.0 49.4 396 260-672 129-570 (615)
17 KOG2002 TPR-containing nuclear 99.9 1E-18 2.2E-23 180.1 50.6 530 109-656 176-762 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-18 5.2E-23 186.9 56.2 360 156-535 130-495 (615)
19 PRK11788 tetratricopeptide rep 99.9 3.8E-20 8.3E-25 190.9 36.5 296 344-644 47-353 (389)
20 PRK11788 tetratricopeptide rep 99.9 9E-20 2E-24 188.2 38.2 296 275-577 49-353 (389)
21 PRK15174 Vi polysaccharide exp 99.9 1.1E-18 2.3E-23 188.8 45.2 356 261-642 45-407 (656)
22 PRK10049 pgaA outer membrane p 99.9 2.6E-18 5.6E-23 189.9 48.8 164 222-394 14-177 (765)
23 PRK15174 Vi polysaccharide exp 99.9 1E-18 2.2E-23 188.9 42.7 335 296-641 42-384 (656)
24 PRK14574 hmsH outer membrane p 99.9 1.3E-16 2.9E-21 172.6 52.9 434 188-641 34-516 (822)
25 PRK10049 pgaA outer membrane p 99.9 4.5E-17 9.8E-22 180.1 49.7 408 158-583 20-466 (765)
26 PRK14574 hmsH outer membrane p 99.8 1.7E-15 3.7E-20 164.1 55.3 441 149-605 31-512 (822)
27 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.9E-19 136.5 43.0 315 163-484 125-480 (625)
28 KOG2003 TPR repeat-containing 99.8 4.9E-16 1.1E-20 146.8 33.3 470 95-591 199-708 (840)
29 KOG0495 HAT repeat protein [RN 99.8 3.4E-13 7.4E-18 133.6 54.2 487 162-671 385-878 (913)
30 KOG2076 RNA polymerase III tra 99.8 5E-13 1.1E-17 137.8 55.0 371 295-671 413-893 (895)
31 KOG2076 RNA polymerase III tra 99.8 3.4E-13 7.4E-18 139.0 52.9 329 162-499 149-510 (895)
32 KOG2003 TPR repeat-containing 99.8 6.5E-15 1.4E-19 139.3 35.7 472 187-670 200-719 (840)
33 KOG0495 HAT repeat protein [RN 99.8 3.7E-12 8E-17 126.4 54.5 471 160-650 413-891 (913)
34 KOG4422 Uncharacterized conser 99.8 1.8E-13 4E-18 128.9 42.7 427 187-640 115-592 (625)
35 KOG1915 Cell cycle control pro 99.7 5.7E-12 1.2E-16 120.5 49.4 454 199-672 84-584 (677)
36 PF13429 TPR_15: Tetratricopep 99.7 8.7E-17 1.9E-21 156.9 13.4 261 407-674 13-278 (280)
37 KOG1915 Cell cycle control pro 99.7 3.4E-11 7.4E-16 115.3 49.6 456 166-637 86-584 (677)
38 KOG1173 Anaphase-promoting com 99.7 5.7E-13 1.2E-17 130.4 38.2 480 157-671 20-516 (611)
39 TIGR00540 hemY_coli hemY prote 99.7 1.8E-13 3.8E-18 140.6 34.9 288 379-672 96-398 (409)
40 PRK10747 putative protoheme IX 99.7 5.7E-13 1.2E-17 136.1 36.0 250 413-672 129-389 (398)
41 KOG1155 Anaphase-promoting com 99.7 2.4E-11 5.2E-16 116.2 42.6 288 340-636 235-534 (559)
42 KOG0547 Translocase of outer m 99.7 1.7E-12 3.7E-17 124.6 35.1 219 412-637 336-565 (606)
43 KOG1155 Anaphase-promoting com 99.6 2.5E-11 5.4E-16 116.1 40.2 383 218-637 159-552 (559)
44 PRK10747 putative protoheme IX 99.6 3.4E-12 7.3E-17 130.4 35.9 125 471-602 262-386 (398)
45 KOG0547 Translocase of outer m 99.6 1.2E-11 2.6E-16 119.0 36.4 409 159-605 121-565 (606)
46 KOG3785 Uncharacterized conser 99.6 4.2E-11 9.2E-16 110.5 37.3 180 164-360 33-213 (557)
47 TIGR00540 hemY_coli hemY prote 99.6 6.1E-12 1.3E-16 129.3 36.0 286 344-637 96-398 (409)
48 KOG1126 DNA-binding cell divis 99.6 4.5E-13 9.7E-18 134.0 26.1 286 347-644 334-626 (638)
49 KOG1126 DNA-binding cell divis 99.6 3.7E-13 8.1E-18 134.6 24.0 278 382-672 334-619 (638)
50 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.8E-19 141.6 13.0 258 373-637 14-276 (280)
51 KOG2047 mRNA splicing factor [ 99.6 5.1E-09 1.1E-13 104.5 49.8 496 163-672 112-686 (835)
52 KOG1173 Anaphase-promoting com 99.6 8.7E-11 1.9E-15 115.4 36.6 283 363-651 240-530 (611)
53 COG2956 Predicted N-acetylgluc 99.6 7.1E-11 1.5E-15 108.0 32.8 300 260-570 38-346 (389)
54 COG3071 HemY Uncharacterized e 99.5 5.8E-11 1.3E-15 112.0 33.1 283 345-636 97-388 (400)
55 COG2956 Predicted N-acetylgluc 99.5 6.3E-11 1.4E-15 108.3 32.0 290 345-639 48-348 (389)
56 KOG4162 Predicted calmodulin-b 99.5 2.5E-09 5.5E-14 109.1 46.8 406 255-672 320-782 (799)
57 KOG1174 Anaphase-promoting com 99.5 2E-09 4.3E-14 101.7 41.5 314 330-651 192-512 (564)
58 KOG4318 Bicoid mRNA stability 99.5 1E-10 2.2E-15 120.5 34.2 253 175-449 12-283 (1088)
59 KOG3785 Uncharacterized conser 99.5 8E-09 1.7E-13 95.7 41.9 421 159-612 63-497 (557)
60 KOG1156 N-terminal acetyltrans 99.5 2E-08 4.3E-13 100.7 47.2 222 166-396 20-248 (700)
61 COG3071 HemY Uncharacterized e 99.5 4.3E-10 9.4E-15 106.3 33.8 283 309-602 97-386 (400)
62 PF12569 NARP1: NMDA receptor- 99.5 4.4E-09 9.6E-14 108.4 43.4 55 615-670 462-517 (517)
63 KOG2047 mRNA splicing factor [ 99.5 4.3E-08 9.4E-13 98.0 46.3 456 189-673 103-615 (835)
64 KOG2376 Signal recognition par 99.4 7.2E-09 1.6E-13 102.7 39.6 443 195-668 19-515 (652)
65 KOG1129 TPR repeat-containing 99.4 2.6E-11 5.7E-16 110.7 20.7 239 397-640 218-460 (478)
66 KOG4162 Predicted calmodulin-b 99.4 6.9E-09 1.5E-13 106.0 39.5 475 146-641 278-786 (799)
67 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 109.6 26.9 198 472-672 31-231 (234)
68 KOG1156 N-terminal acetyltrans 99.4 5.4E-08 1.2E-12 97.7 43.5 432 190-640 10-470 (700)
69 KOG0985 Vesicle coat protein c 99.4 3.3E-07 7.2E-12 96.2 49.0 504 125-670 600-1246(1666)
70 KOG1174 Anaphase-promoting com 99.4 3E-07 6.4E-12 87.4 43.9 302 294-605 192-499 (564)
71 KOG1840 Kinesin light chain [C 99.4 7E-10 1.5E-14 112.7 28.1 195 477-671 246-477 (508)
72 PRK12370 invasion protein regu 99.4 1.1E-09 2.4E-14 117.1 31.2 231 366-605 255-501 (553)
73 PF12569 NARP1: NMDA receptor- 99.4 6.9E-08 1.5E-12 99.7 42.5 292 162-466 13-334 (517)
74 PRK12370 invasion protein regu 99.3 1.9E-09 4.1E-14 115.3 31.3 218 346-572 318-536 (553)
75 KOG4318 Bicoid mRNA stability 99.3 3.4E-08 7.3E-13 102.4 37.5 83 329-414 201-283 (1088)
76 PRK11189 lipoprotein NlpI; Pro 99.3 6.9E-10 1.5E-14 108.5 24.5 233 411-653 35-280 (296)
77 TIGR02521 type_IV_pilW type IV 99.3 2.7E-09 5.8E-14 101.4 27.9 94 334-429 33-126 (234)
78 KOG1840 Kinesin light chain [C 99.3 2.9E-09 6.2E-14 108.3 27.9 241 368-636 200-477 (508)
79 KOG3616 Selective LIM binding 99.3 2.4E-07 5.1E-12 94.0 39.2 387 201-667 544-931 (1636)
80 KOG2376 Signal recognition par 99.3 4.5E-07 9.7E-12 90.3 40.1 445 161-635 20-517 (652)
81 COG3063 PilF Tfp pilus assembl 99.2 1.3E-09 2.7E-14 95.5 19.0 195 472-670 35-233 (250)
82 KOG1129 TPR repeat-containing 99.2 1.2E-09 2.5E-14 100.1 19.5 228 371-605 227-457 (478)
83 PF13041 PPR_2: PPR repeat fam 99.2 2.6E-11 5.6E-16 82.6 6.6 49 330-378 1-49 (50)
84 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-08 2.9E-13 99.5 27.9 218 379-605 38-264 (296)
85 KOG0985 Vesicle coat protein c 99.2 4.4E-06 9.5E-11 88.1 46.5 310 296-655 984-1324(1666)
86 KOG1127 TPR repeat-containing 99.2 6.7E-07 1.5E-11 94.2 39.7 545 113-671 474-1102(1238)
87 PF13041 PPR_2: PPR repeat fam 99.2 5.7E-11 1.2E-15 80.8 6.7 50 221-270 1-50 (50)
88 KOG0548 Molecular co-chaperone 99.2 1.5E-07 3.2E-12 92.8 31.5 378 275-672 16-454 (539)
89 KOG0548 Molecular co-chaperone 99.2 3.3E-07 7.1E-12 90.4 33.5 402 230-656 9-472 (539)
90 COG3063 PilF Tfp pilus assembl 99.1 4.3E-08 9.3E-13 86.1 23.7 200 438-641 36-239 (250)
91 KOG3617 WD40 and TPR repeat-co 99.1 4.3E-06 9.4E-11 86.3 40.9 210 153-393 757-993 (1416)
92 KOG4340 Uncharacterized conser 99.1 3.3E-07 7.2E-12 83.3 29.3 195 158-364 15-210 (459)
93 KOG0624 dsRNA-activated protei 99.1 7.9E-07 1.7E-11 82.5 32.1 323 294-646 36-377 (504)
94 KOG0624 dsRNA-activated protei 99.1 1.6E-06 3.5E-11 80.5 32.6 308 262-605 42-369 (504)
95 PRK04841 transcriptional regul 99.1 8E-07 1.7E-11 102.6 38.8 367 299-672 344-759 (903)
96 cd05804 StaR_like StaR_like; a 99.1 1.1E-06 2.4E-11 89.5 35.2 196 476-672 118-335 (355)
97 KOG3616 Selective LIM binding 99.1 5.1E-06 1.1E-10 84.6 37.9 193 197-427 715-907 (1636)
98 KOG1127 TPR repeat-containing 99.1 2.2E-05 4.7E-10 83.2 43.6 539 112-670 507-1135(1238)
99 cd05804 StaR_like StaR_like; a 99.0 2.7E-06 5.8E-11 86.6 36.2 199 297-499 7-213 (355)
100 KOG4340 Uncharacterized conser 99.0 1.6E-06 3.4E-11 79.0 27.6 277 104-392 17-335 (459)
101 KOG3617 WD40 and TPR repeat-co 99.0 3E-06 6.4E-11 87.5 32.7 363 257-673 725-1174(1416)
102 PRK04841 transcriptional regul 99.0 9.1E-06 2E-10 93.9 41.8 386 148-536 336-760 (903)
103 PF04733 Coatomer_E: Coatomer 99.0 3.5E-08 7.7E-13 94.9 17.3 252 375-641 9-268 (290)
104 KOG1125 TPR repeat-containing 98.9 3.4E-08 7.4E-13 98.0 16.9 230 410-671 293-525 (579)
105 PF04733 Coatomer_E: Coatomer 98.9 7.1E-08 1.5E-12 92.8 17.9 249 341-605 10-264 (290)
106 KOG1125 TPR repeat-containing 98.9 3E-07 6.4E-12 91.5 20.5 216 376-602 294-523 (579)
107 PLN02789 farnesyltranstransfer 98.9 3.4E-06 7.3E-11 82.4 27.6 219 447-670 47-299 (320)
108 PRK15179 Vi polysaccharide bio 98.8 1E-06 2.2E-11 94.7 23.3 129 506-638 85-217 (694)
109 TIGR03302 OM_YfiO outer membra 98.8 6E-07 1.3E-11 85.3 18.8 186 469-673 30-232 (235)
110 KOG1070 rRNA processing protei 98.7 9.8E-06 2.1E-10 88.6 28.1 222 331-559 1457-1688(1710)
111 KOG1070 rRNA processing protei 98.7 9.6E-06 2.1E-10 88.7 27.9 232 434-671 1455-1698(1710)
112 PRK10370 formate-dependent nit 98.7 1.1E-06 2.4E-11 79.8 18.0 148 479-641 23-176 (198)
113 PRK15359 type III secretion sy 98.7 3E-07 6.5E-12 78.9 12.8 122 527-655 13-137 (144)
114 PRK15359 type III secretion sy 98.7 7.4E-07 1.6E-11 76.5 14.7 106 493-605 14-120 (144)
115 KOG1914 mRNA cleavage and poly 98.7 0.0006 1.3E-08 67.9 45.3 423 185-638 17-501 (656)
116 TIGR03302 OM_YfiO outer membra 98.7 4.4E-06 9.6E-11 79.3 20.7 186 434-640 30-234 (235)
117 KOG1128 Uncharacterized conser 98.7 1.5E-06 3.1E-11 89.0 17.8 208 443-671 404-614 (777)
118 KOG1128 Uncharacterized conser 98.6 5.6E-05 1.2E-09 77.8 28.4 216 298-535 400-615 (777)
119 KOG2053 Mitochondrial inherita 98.6 0.0013 2.8E-08 69.7 44.5 121 544-667 438-564 (932)
120 KOG2053 Mitochondrial inherita 98.6 0.0013 2.9E-08 69.6 51.3 423 163-605 53-535 (932)
121 PLN02789 farnesyltranstransfer 98.6 6.4E-05 1.4E-09 73.5 27.8 220 147-379 34-267 (320)
122 PRK14720 transcript cleavage f 98.6 1.4E-05 2.9E-10 87.0 24.7 238 366-655 30-268 (906)
123 KOG3060 Uncharacterized conser 98.6 2.9E-05 6.3E-10 69.5 21.9 205 448-656 23-237 (289)
124 PF12854 PPR_1: PPR repeat 98.6 7.9E-08 1.7E-12 58.5 4.2 32 218-249 2-33 (34)
125 PF12854 PPR_1: PPR repeat 98.6 8.2E-08 1.8E-12 58.4 4.2 29 364-392 4-32 (34)
126 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.5E-08 66.0 42.0 426 220-672 17-500 (656)
127 PRK15363 pathogenicity island 98.5 3.8E-06 8.3E-11 70.6 14.5 96 578-674 36-133 (157)
128 COG4783 Putative Zn-dependent 98.5 2.4E-05 5.2E-10 77.0 22.0 191 434-647 271-462 (484)
129 KOG3060 Uncharacterized conser 98.5 7.9E-05 1.7E-09 66.8 22.9 187 414-605 24-219 (289)
130 PRK15179 Vi polysaccharide bio 98.5 4.7E-05 1E-09 82.2 25.4 196 403-616 29-229 (694)
131 PRK10370 formate-dependent nit 98.5 2.4E-05 5.2E-10 71.1 19.7 117 485-605 52-172 (198)
132 COG5010 TadD Flp pilus assembl 98.5 4E-05 8.8E-10 69.3 20.2 156 476-635 70-228 (257)
133 PRK14720 transcript cleavage f 98.5 0.00014 3.1E-09 79.3 28.2 59 404-464 118-176 (906)
134 KOG3081 Vesicle coat complex C 98.5 0.00024 5.3E-09 64.3 24.6 86 412-501 147-236 (299)
135 KOG3081 Vesicle coat complex C 98.5 0.00054 1.2E-08 62.2 26.7 173 282-466 94-271 (299)
136 COG5010 TadD Flp pilus assembl 98.4 8E-05 1.7E-09 67.5 21.3 157 406-566 70-226 (257)
137 TIGR02552 LcrH_SycD type III s 98.4 4E-06 8.6E-11 71.7 12.8 110 529-641 5-117 (135)
138 PF09976 TPR_21: Tetratricopep 98.3 4.2E-05 9.1E-10 66.0 15.5 54 615-670 91-144 (145)
139 COG4783 Putative Zn-dependent 98.3 9.7E-05 2.1E-09 72.8 19.0 181 469-674 271-455 (484)
140 PF09976 TPR_21: Tetratricopep 98.2 6.8E-05 1.5E-09 64.7 15.1 127 507-636 12-145 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.4E-05 1.4E-09 75.0 16.3 116 548-668 175-292 (395)
142 KOG2041 WD40 repeat protein [G 98.2 0.014 3E-07 60.2 32.4 154 274-463 747-904 (1189)
143 TIGR02552 LcrH_SycD type III s 98.1 0.00014 2.9E-09 62.1 15.5 95 474-570 19-113 (135)
144 KOG0553 TPR repeat-containing 98.1 4.1E-05 8.8E-10 70.7 11.9 106 551-659 90-198 (304)
145 KOG0550 Molecular chaperone (D 98.1 0.00023 5E-09 68.4 16.6 280 371-657 53-370 (486)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00016 3.5E-09 72.1 15.9 120 478-604 175-295 (395)
147 cd00189 TPR Tetratricopeptide 98.0 6.4E-05 1.4E-09 59.3 10.7 91 581-672 4-96 (100)
148 PF13414 TPR_11: TPR repeat; P 98.0 1.9E-05 4.1E-10 58.1 6.6 64 608-672 2-66 (69)
149 PF12895 Apc3: Anaphase-promot 98.0 1.5E-05 3.4E-10 61.2 5.9 55 613-669 29-83 (84)
150 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00013 2.8E-09 60.6 11.7 100 544-646 4-112 (119)
151 PF13432 TPR_16: Tetratricopep 97.9 4E-05 8.6E-10 55.5 6.8 57 615-672 3-59 (65)
152 PF07079 DUF1347: Protein of u 97.9 0.028 6E-07 55.4 46.4 73 198-270 89-179 (549)
153 PF14938 SNAP: Soluble NSF att 97.9 0.0058 1.2E-07 59.4 23.6 32 148-179 30-61 (282)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00034 7.4E-09 58.0 13.1 95 509-605 4-104 (119)
155 TIGR00756 PPR pentatricopeptid 97.9 2.5E-05 5.5E-10 48.2 4.5 33 334-366 2-34 (35)
156 KOG0550 Molecular chaperone (D 97.9 0.0029 6.3E-08 61.2 19.9 340 302-671 55-421 (486)
157 TIGR00756 PPR pentatricopeptid 97.9 2.6E-05 5.6E-10 48.2 4.5 33 509-541 2-34 (35)
158 PLN03088 SGT1, suppressor of 97.9 0.00016 3.5E-09 72.6 12.5 103 548-653 8-113 (356)
159 COG3898 Uncharacterized membra 97.9 0.03 6.5E-07 54.0 30.3 126 335-465 85-216 (531)
160 PF14938 SNAP: Soluble NSF att 97.9 0.0042 9.1E-08 60.4 21.7 215 131-394 33-264 (282)
161 PF12895 Apc3: Anaphase-promot 97.8 7.4E-05 1.6E-09 57.4 6.9 80 555-634 2-83 (84)
162 PLN03088 SGT1, suppressor of 97.8 0.00059 1.3E-08 68.6 14.8 91 512-605 7-98 (356)
163 KOG0553 TPR repeat-containing 97.8 0.00014 3.1E-09 67.2 9.3 88 584-672 88-177 (304)
164 cd00189 TPR Tetratricopeptide 97.8 0.00036 7.8E-09 54.8 10.9 90 548-639 6-98 (100)
165 KOG1130 Predicted G-alpha GTPa 97.8 0.00021 4.6E-09 68.5 10.6 50 375-425 25-78 (639)
166 PF13812 PPR_3: Pentatricopept 97.8 5.2E-05 1.1E-09 46.4 4.3 31 509-539 3-33 (34)
167 PRK02603 photosystem I assembl 97.7 0.0014 2.9E-08 58.5 15.0 115 507-641 35-152 (172)
168 PF13812 PPR_3: Pentatricopept 97.7 5.4E-05 1.2E-09 46.3 4.1 32 334-365 3-34 (34)
169 PF10037 MRP-S27: Mitochondria 97.7 0.00065 1.4E-08 68.2 13.7 117 331-447 65-183 (429)
170 PF10037 MRP-S27: Mitochondria 97.7 0.00067 1.4E-08 68.1 13.6 124 397-520 61-186 (429)
171 COG4700 Uncharacterized protei 97.7 0.0099 2.1E-07 51.0 18.3 126 505-632 87-216 (251)
172 PRK15363 pathogenicity island 97.7 0.001 2.2E-08 56.3 12.2 92 546-639 39-133 (157)
173 PRK15331 chaperone protein Sic 97.7 0.00091 2E-08 56.8 11.7 84 553-637 48-133 (165)
174 COG4235 Cytochrome c biogenesi 97.7 0.0016 3.5E-08 60.9 14.3 116 523-641 138-259 (287)
175 KOG1130 Predicted G-alpha GTPa 97.6 0.0005 1.1E-08 66.0 11.0 282 340-637 25-343 (639)
176 PF08579 RPM2: Mitochondrial r 97.6 0.00096 2.1E-08 52.1 10.2 81 228-308 30-116 (120)
177 PF13432 TPR_16: Tetratricopep 97.6 0.00023 5E-09 51.4 6.6 59 583-641 3-63 (65)
178 PRK02603 photosystem I assembl 97.6 0.0014 3E-08 58.4 12.9 82 544-625 37-122 (172)
179 PRK10866 outer membrane biogen 97.6 0.018 3.9E-07 54.2 20.8 178 478-671 38-239 (243)
180 CHL00033 ycf3 photosystem I as 97.6 0.0011 2.3E-08 59.0 11.9 88 581-669 39-138 (168)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00011 2.5E-09 53.7 4.5 54 588-641 2-57 (68)
182 COG4700 Uncharacterized protei 97.6 0.037 8.1E-07 47.6 19.7 132 468-603 85-219 (251)
183 PF05843 Suf: Suppressor of fo 97.6 0.0027 5.9E-08 61.4 15.1 130 509-640 3-138 (280)
184 PRK10153 DNA-binding transcrip 97.6 0.0064 1.4E-07 63.9 18.9 72 506-581 419-490 (517)
185 CHL00033 ycf3 photosystem I as 97.5 0.0015 3.2E-08 58.1 12.3 62 509-570 37-100 (168)
186 KOG1538 Uncharacterized conser 97.5 0.037 7.9E-07 56.8 22.8 99 191-321 559-657 (1081)
187 PF08579 RPM2: Mitochondrial r 97.5 0.0018 4E-08 50.6 10.7 75 374-448 32-115 (120)
188 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.7E-09 43.6 3.3 29 334-362 2-30 (31)
189 PRK10866 outer membrane biogen 97.5 0.079 1.7E-06 50.0 23.4 55 548-602 181-237 (243)
190 PRK10153 DNA-binding transcrip 97.5 0.0098 2.1E-07 62.5 19.0 65 577-641 420-485 (517)
191 PF13414 TPR_11: TPR repeat; P 97.5 0.00045 9.9E-09 50.6 6.6 63 578-640 4-69 (69)
192 KOG2041 WD40 repeat protein [G 97.4 0.2 4.4E-06 52.1 26.8 157 166-358 747-904 (1189)
193 PF01535 PPR: PPR repeat; Int 97.4 0.00018 3.9E-09 42.8 3.4 26 510-535 3-28 (31)
194 COG3898 Uncharacterized membra 97.4 0.14 3E-06 49.6 32.5 218 379-607 166-393 (531)
195 PF13371 TPR_9: Tetratricopept 97.4 0.00052 1.1E-08 51.0 6.2 57 585-641 3-61 (73)
196 PF05843 Suf: Suppressor of fo 97.4 0.003 6.4E-08 61.2 13.0 131 225-360 3-135 (280)
197 PF06239 ECSIT: Evolutionarily 97.4 0.0042 9E-08 55.2 12.2 102 187-310 46-152 (228)
198 PF14559 TPR_19: Tetratricopep 97.4 0.00064 1.4E-08 49.6 6.2 51 553-605 2-53 (68)
199 PRK10803 tol-pal system protei 97.3 0.0039 8.5E-08 59.1 12.1 97 543-641 144-249 (263)
200 KOG1538 Uncharacterized conser 97.3 0.022 4.9E-07 58.3 17.6 92 296-393 556-658 (1081)
201 PF13424 TPR_12: Tetratricopep 97.3 0.0004 8.7E-09 52.4 4.3 63 610-672 6-74 (78)
202 PF13525 YfiO: Outer membrane 97.2 0.052 1.1E-06 49.8 18.8 168 479-664 12-198 (203)
203 PF12688 TPR_5: Tetratrico pep 97.2 0.013 2.8E-07 47.9 12.9 53 551-603 10-64 (120)
204 PF06239 ECSIT: Evolutionarily 97.2 0.0096 2.1E-07 53.0 12.7 116 221-359 45-166 (228)
205 PRK10803 tol-pal system protei 97.2 0.0082 1.8E-07 57.0 12.9 98 576-673 141-246 (263)
206 KOG2114 Vacuolar assembly/sort 97.1 0.2 4.2E-06 53.6 23.3 136 137-287 372-516 (933)
207 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.33 7.1E-06 48.1 37.2 131 508-641 398-534 (660)
208 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0021 4.5E-08 64.0 8.7 64 576-639 74-142 (453)
209 PF07079 DUF1347: Protein of u 97.1 0.35 7.5E-06 48.1 43.5 142 197-344 15-179 (549)
210 PF12688 TPR_5: Tetratrico pep 97.1 0.04 8.6E-07 45.0 14.7 104 160-269 8-117 (120)
211 PF04840 Vps16_C: Vps16, C-ter 97.1 0.33 7.2E-06 47.6 26.2 300 298-659 2-306 (319)
212 KOG2796 Uncharacterized conser 97.0 0.053 1.2E-06 49.4 15.5 163 488-657 165-339 (366)
213 COG0457 NrfG FOG: TPR repeat [ 97.0 0.32 6.8E-06 45.6 30.1 222 415-641 36-268 (291)
214 PF13525 YfiO: Outer membrane 97.0 0.1 2.3E-06 47.8 18.0 22 549-570 148-169 (203)
215 KOG1550 Extracellular protein 96.9 0.79 1.7E-05 49.3 27.4 81 348-432 228-323 (552)
216 PF13371 TPR_9: Tetratricopept 96.9 0.0055 1.2E-07 45.4 7.8 54 618-672 4-57 (73)
217 KOG0543 FKBP-type peptidyl-pro 96.9 0.024 5.1E-07 55.4 13.5 93 512-605 213-319 (397)
218 COG4235 Cytochrome c biogenesi 96.8 0.067 1.5E-06 50.3 15.6 116 220-340 153-268 (287)
219 KOG1585 Protein required for f 96.8 0.11 2.3E-06 47.0 15.8 213 147-389 25-249 (308)
220 PF13428 TPR_14: Tetratricopep 96.8 0.0034 7.4E-08 40.9 4.7 42 610-652 2-43 (44)
221 PF13281 DUF4071: Domain of un 96.7 0.26 5.6E-06 48.9 19.0 28 613-640 309-336 (374)
222 PF13424 TPR_12: Tetratricopep 96.7 0.0064 1.4E-07 45.7 6.4 27 611-637 48-74 (78)
223 PF13431 TPR_17: Tetratricopep 96.6 0.0018 3.9E-08 39.2 2.5 34 631-665 1-34 (34)
224 PF13281 DUF4071: Domain of un 96.6 0.65 1.4E-05 46.1 21.3 30 541-570 304-333 (374)
225 PF03704 BTAD: Bacterial trans 96.6 0.068 1.5E-06 46.0 13.2 58 613-671 66-123 (146)
226 KOG1941 Acetylcholine receptor 96.5 0.72 1.6E-05 44.5 19.6 127 477-603 127-272 (518)
227 PRK15331 chaperone protein Sic 96.4 0.26 5.6E-06 42.2 15.1 89 480-570 45-133 (165)
228 KOG0543 FKBP-type peptidyl-pro 96.4 0.02 4.3E-07 55.9 9.4 129 545-674 211-356 (397)
229 KOG1941 Acetylcholine receptor 96.4 0.47 1E-05 45.7 17.7 163 475-637 86-274 (518)
230 KOG2280 Vacuolar assembly/sort 96.3 2 4.3E-05 45.8 28.7 112 543-670 685-796 (829)
231 PF08631 SPO22: Meiosis protei 96.3 1.2 2.6E-05 43.2 24.1 172 111-295 7-191 (278)
232 KOG2796 Uncharacterized conser 96.3 0.9 2E-05 41.8 24.0 131 475-606 180-315 (366)
233 PF02259 FAT: FAT domain; Int 96.3 1.2 2.6E-05 45.0 22.4 150 505-657 144-305 (352)
234 COG1729 Uncharacterized protei 96.2 0.087 1.9E-06 48.9 12.0 97 544-641 144-247 (262)
235 KOG1550 Extracellular protein 96.2 2.3 5E-05 45.8 25.6 85 343-433 260-359 (552)
236 COG1729 Uncharacterized protei 96.2 0.084 1.8E-06 49.1 11.7 94 580-673 144-244 (262)
237 PRK11906 transcriptional regul 96.2 0.43 9.4E-06 48.1 17.3 145 487-635 273-433 (458)
238 COG0457 NrfG FOG: TPR repeat [ 96.2 1.1 2.4E-05 41.7 32.3 222 380-605 36-264 (291)
239 PF04840 Vps16_C: Vps16, C-ter 96.2 1.5 3.2E-05 43.1 30.7 103 372-494 182-284 (319)
240 COG4105 ComL DNA uptake lipopr 96.1 1.1 2.4E-05 41.4 20.7 82 257-343 34-117 (254)
241 PF03704 BTAD: Bacterial trans 96.1 0.13 2.8E-06 44.3 12.4 70 155-225 64-138 (146)
242 PRK11906 transcriptional regul 96.1 0.14 3.1E-06 51.4 13.4 148 522-671 273-434 (458)
243 PF10300 DUF3808: Protein of u 96.0 0.31 6.6E-06 51.1 16.7 174 456-635 176-373 (468)
244 COG2976 Uncharacterized protei 96.0 0.35 7.6E-06 42.4 14.0 117 525-641 70-191 (207)
245 KOG1258 mRNA processing protei 96.0 2.3 5E-05 44.2 36.1 133 187-324 44-179 (577)
246 COG4649 Uncharacterized protei 96.0 0.91 2E-05 39.0 16.1 96 233-329 104-200 (221)
247 KOG2114 Vacuolar assembly/sort 95.9 3.1 6.8E-05 45.0 28.7 68 197-271 377-444 (933)
248 PF13512 TPR_18: Tetratricopep 95.9 0.15 3.3E-06 42.6 10.9 58 583-640 16-78 (142)
249 COG5107 RNA14 Pre-mRNA 3'-end 95.9 2.1 4.6E-05 42.7 33.6 82 153-237 42-123 (660)
250 COG2976 Uncharacterized protei 95.8 0.5 1.1E-05 41.5 14.0 127 543-673 55-188 (207)
251 PF12921 ATP13: Mitochondrial 95.7 0.085 1.8E-06 43.6 8.8 100 222-344 1-100 (126)
252 KOG1585 Protein required for f 95.7 1.6 3.4E-05 39.9 20.0 204 335-565 34-250 (308)
253 KOG2280 Vacuolar assembly/sort 95.7 3.6 7.8E-05 43.9 32.7 102 217-321 426-532 (829)
254 COG3118 Thioredoxin domain-con 95.7 1.6 3.4E-05 41.3 17.5 52 482-534 144-195 (304)
255 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.062 1.4E-06 53.8 9.1 65 505-571 73-141 (453)
256 PF09205 DUF1955: Domain of un 95.6 1 2.2E-05 36.7 14.3 56 616-672 93-148 (161)
257 KOG1920 IkappaB kinase complex 95.6 5.5 0.00012 45.1 25.4 132 479-635 915-1052(1265)
258 PF08631 SPO22: Meiosis protei 95.6 2.5 5.3E-05 41.0 27.1 62 369-431 86-150 (278)
259 COG3118 Thioredoxin domain-con 95.5 1.9 4.1E-05 40.7 17.4 148 198-351 144-291 (304)
260 PF12921 ATP13: Mitochondrial 95.2 0.29 6.2E-06 40.5 10.3 49 363-411 48-97 (126)
261 PF10300 DUF3808: Protein of u 95.2 1.6 3.5E-05 45.7 18.2 116 486-604 247-374 (468)
262 KOG1920 IkappaB kinase complex 95.1 7.7 0.00017 44.0 25.3 80 479-569 972-1053(1265)
263 COG4105 ComL DNA uptake lipopr 95.1 2.8 6.1E-05 38.9 20.3 55 482-536 44-100 (254)
264 smart00299 CLH Clathrin heavy 95.0 1.9 4.1E-05 36.6 15.4 42 478-520 13-54 (140)
265 KOG4555 TPR repeat-containing 95.0 0.44 9.5E-06 38.6 10.1 90 550-641 51-147 (175)
266 PF04184 ST7: ST7 protein; In 94.9 2.6 5.5E-05 43.0 17.5 60 476-535 263-323 (539)
267 KOG4555 TPR repeat-containing 94.9 1.7 3.7E-05 35.3 13.6 92 162-254 52-146 (175)
268 PF04184 ST7: ST7 protein; In 94.8 2.1 4.4E-05 43.6 16.4 59 546-604 263-322 (539)
269 PF13176 TPR_7: Tetratricopept 94.7 0.059 1.3E-06 33.1 3.8 26 646-671 1-26 (36)
270 KOG4234 TPR repeat-containing 94.6 0.23 4.9E-06 43.5 8.3 103 548-653 101-211 (271)
271 KOG2610 Uncharacterized conser 94.6 0.9 1.9E-05 43.3 12.8 159 413-575 114-280 (491)
272 PF09205 DUF1955: Domain of un 94.4 2.3 5E-05 34.8 15.0 62 371-433 90-151 (161)
273 COG4649 Uncharacterized protei 94.4 2.1 4.6E-05 36.8 13.3 135 507-642 59-200 (221)
274 smart00299 CLH Clathrin heavy 94.4 2.7 5.9E-05 35.6 15.7 127 510-656 10-137 (140)
275 KOG1464 COP9 signalosome, subu 94.4 4.2 9.1E-05 37.7 17.7 49 381-429 41-92 (440)
276 PF04053 Coatomer_WDAD: Coatom 94.4 1.2 2.5E-05 46.1 14.4 155 343-532 272-427 (443)
277 PF04053 Coatomer_WDAD: Coatom 94.4 1.7 3.8E-05 44.8 15.7 159 304-497 269-427 (443)
278 PF10345 Cohesin_load: Cohesin 94.3 10 0.00022 41.6 39.6 192 378-570 372-605 (608)
279 COG4785 NlpI Lipoprotein NlpI, 94.2 4 8.7E-05 36.6 16.4 188 447-648 75-275 (297)
280 KOG2610 Uncharacterized conser 94.2 4.2 9.1E-05 39.0 16.0 116 165-286 115-234 (491)
281 KOG0890 Protein kinase of the 94.2 19 0.00042 44.3 26.3 153 301-461 1388-1542(2382)
282 COG3629 DnrI DNA-binding trans 94.1 0.59 1.3E-05 44.3 10.7 78 154-232 154-236 (280)
283 KOG3941 Intermediate in Toll s 94.1 1.1 2.5E-05 41.6 11.9 106 185-312 64-174 (406)
284 PF00515 TPR_1: Tetratricopept 94.0 0.099 2.1E-06 31.5 3.6 31 611-641 3-33 (34)
285 PF07719 TPR_2: Tetratricopept 93.9 0.11 2.3E-06 31.3 3.7 31 611-641 3-33 (34)
286 KOG3941 Intermediate in Toll s 93.8 0.52 1.1E-05 43.7 9.3 51 329-379 64-119 (406)
287 COG2909 MalT ATP-dependent tra 93.8 13 0.00028 40.9 30.8 225 378-602 426-684 (894)
288 PF13170 DUF4003: Protein of u 93.8 3.1 6.8E-05 40.4 15.2 130 277-409 78-224 (297)
289 KOG4648 Uncharacterized conser 93.2 0.45 9.7E-06 45.4 8.0 55 514-570 104-159 (536)
290 PF07035 Mic1: Colon cancer-as 93.2 5.4 0.00012 34.7 15.7 31 494-524 16-46 (167)
291 PF13176 TPR_7: Tetratricopept 93.1 0.18 3.8E-06 30.9 3.7 27 611-637 1-27 (36)
292 PF13512 TPR_18: Tetratricopep 93.0 3.8 8.2E-05 34.4 12.4 26 476-501 51-76 (142)
293 COG3629 DnrI DNA-binding trans 93.0 2.2 4.7E-05 40.6 12.5 75 579-653 155-236 (280)
294 PF09613 HrpB1_HrpK: Bacterial 92.9 5.4 0.00012 34.2 13.4 50 554-605 22-72 (160)
295 COG4785 NlpI Lipoprotein NlpI, 92.8 7.2 0.00016 35.1 17.1 28 369-396 239-266 (297)
296 COG0790 FOG: TPR repeat, SEL1 92.6 11 0.00024 36.8 20.4 83 449-537 53-143 (292)
297 PF07719 TPR_2: Tetratricopept 92.5 0.28 6.1E-06 29.4 4.1 29 645-673 2-30 (34)
298 PF00515 TPR_1: Tetratricopept 92.1 0.35 7.7E-06 29.0 4.1 28 645-672 2-29 (34)
299 PF10602 RPN7: 26S proteasome 92.1 3.1 6.8E-05 36.9 11.8 65 152-216 35-101 (177)
300 PF13428 TPR_14: Tetratricopep 92.0 0.55 1.2E-05 30.3 5.2 28 190-217 3-30 (44)
301 KOG4234 TPR repeat-containing 91.8 3.1 6.8E-05 36.8 10.8 91 513-606 101-197 (271)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 91.7 0.66 1.4E-05 35.4 5.8 51 625-675 23-73 (103)
303 PF04097 Nic96: Nup93/Nic96; 91.5 24 0.00053 38.6 24.5 63 297-361 112-181 (613)
304 PF13170 DUF4003: Protein of u 91.4 15 0.00032 35.8 21.1 130 348-479 78-224 (297)
305 PF02284 COX5A: Cytochrome c o 91.3 0.77 1.7E-05 35.4 5.9 49 627-675 28-76 (108)
306 COG1747 Uncharacterized N-term 91.2 20 0.00043 36.9 25.1 176 471-652 65-247 (711)
307 PF07035 Mic1: Colon cancer-as 90.9 10 0.00022 33.0 15.3 132 209-358 15-146 (167)
308 PF10602 RPN7: 26S proteasome 90.7 3.5 7.6E-05 36.6 10.6 62 509-570 38-101 (177)
309 PF13374 TPR_10: Tetratricopep 90.6 0.54 1.2E-05 29.7 4.1 28 645-672 3-30 (42)
310 PF02259 FAT: FAT domain; Int 90.5 21 0.00045 35.9 24.9 66 470-535 144-212 (352)
311 PRK09687 putative lyase; Provi 89.7 20 0.00044 34.6 28.3 124 506-640 141-265 (280)
312 KOG1258 mRNA processing protei 89.7 30 0.00064 36.5 37.0 370 164-556 90-489 (577)
313 TIGR02561 HrpB1_HrpK type III 89.3 12 0.00027 31.6 11.9 49 519-571 22-73 (153)
314 KOG1586 Protein required for f 89.3 17 0.00037 33.3 21.2 21 553-573 165-185 (288)
315 PF10345 Cohesin_load: Cohesin 89.3 38 0.00083 37.2 44.5 58 613-671 539-604 (608)
316 KOG4648 Uncharacterized conser 88.7 1.2 2.5E-05 42.7 6.1 96 548-646 103-201 (536)
317 PF13181 TPR_8: Tetratricopept 88.6 1 2.2E-05 26.8 4.0 27 646-672 3-29 (34)
318 PF13174 TPR_6: Tetratricopept 88.4 0.81 1.8E-05 27.0 3.5 28 646-673 2-29 (33)
319 PF04097 Nic96: Nup93/Nic96; 88.3 44 0.00095 36.7 23.2 42 229-271 117-158 (613)
320 COG5159 RPN6 26S proteasome re 88.3 6.7 0.00015 36.8 10.5 23 649-671 130-152 (421)
321 PF11207 DUF2989: Protein of u 88.3 5.4 0.00012 35.6 9.7 76 587-664 117-198 (203)
322 PF13181 TPR_8: Tetratricopept 88.1 0.66 1.4E-05 27.7 3.0 30 611-640 3-32 (34)
323 KOG4570 Uncharacterized conser 87.5 5.1 0.00011 38.1 9.4 104 217-325 58-164 (418)
324 PRK15180 Vi polysaccharide bio 87.3 37 0.00079 34.6 28.6 90 196-290 331-420 (831)
325 PF13431 TPR_17: Tetratricopep 87.1 0.77 1.7E-05 27.7 2.7 21 222-242 12-32 (34)
326 PF09613 HrpB1_HrpK: Bacterial 87.0 19 0.00041 31.0 14.4 54 162-217 19-73 (160)
327 COG0790 FOG: TPR repeat, SEL1 86.6 33 0.00072 33.4 24.8 152 413-573 52-222 (292)
328 KOG4570 Uncharacterized conser 86.1 4.7 0.0001 38.4 8.4 104 291-396 59-164 (418)
329 KOG2063 Vacuolar assembly/sort 86.1 31 0.00067 38.8 15.9 18 198-215 356-373 (877)
330 PF13374 TPR_10: Tetratricopep 85.9 1.5 3.2E-05 27.6 3.9 28 610-637 3-30 (42)
331 COG3947 Response regulator con 85.9 33 0.00071 32.7 16.8 54 338-392 285-338 (361)
332 PF11207 DUF2989: Protein of u 85.8 12 0.00027 33.5 10.5 77 518-596 118-197 (203)
333 KOG4507 Uncharacterized conser 85.7 2.7 5.9E-05 43.4 7.2 102 553-655 618-721 (886)
334 KOG2066 Vacuolar assembly/sort 85.5 61 0.0013 35.4 26.6 102 160-270 363-467 (846)
335 KOG4642 Chaperone-dependent E3 85.2 12 0.00027 34.2 10.3 115 516-634 19-142 (284)
336 KOG0545 Aryl-hydrocarbon recep 85.2 13 0.00027 34.3 10.3 98 544-641 180-296 (329)
337 KOG2396 HAT (Half-A-TPR) repea 84.8 52 0.0011 34.0 38.7 238 423-673 303-559 (568)
338 PF06552 TOM20_plant: Plant sp 84.2 5.1 0.00011 35.0 7.2 45 625-670 51-99 (186)
339 PF13174 TPR_6: Tetratricopept 84.0 1.2 2.7E-05 26.2 2.7 27 614-640 5-31 (33)
340 KOG0276 Vesicle coat complex C 83.8 29 0.00062 36.6 13.3 132 474-635 616-747 (794)
341 KOG0276 Vesicle coat complex C 83.6 27 0.00058 36.7 13.0 99 307-427 648-746 (794)
342 KOG3364 Membrane protein invol 82.7 9.6 0.00021 31.5 7.7 68 574-641 29-103 (149)
343 PRK10941 hypothetical protein; 82.6 6.7 0.00015 37.4 8.2 61 581-641 185-247 (269)
344 KOG4077 Cytochrome c oxidase, 82.6 4.9 0.00011 32.5 5.9 49 627-675 67-115 (149)
345 PF02284 COX5A: Cytochrome c o 82.5 17 0.00037 28.4 8.5 46 171-216 28-73 (108)
346 PRK09687 putative lyase; Provi 82.5 49 0.0011 32.0 28.3 58 540-604 204-261 (280)
347 PRK11619 lytic murein transgly 82.3 85 0.0018 34.6 38.7 203 449-668 253-463 (644)
348 smart00028 TPR Tetratricopepti 81.4 2.6 5.7E-05 23.9 3.5 30 611-640 3-32 (34)
349 PF10579 Rapsyn_N: Rapsyn N-te 81.3 4.5 9.8E-05 29.7 4.9 49 620-668 17-67 (80)
350 PF07721 TPR_4: Tetratricopept 80.2 2.1 4.6E-05 23.8 2.4 22 647-668 4-25 (26)
351 cd00923 Cyt_c_Oxidase_Va Cytoc 80.1 25 0.00055 27.2 8.9 60 171-231 25-84 (103)
352 PRK15180 Vi polysaccharide bio 79.7 28 0.00061 35.4 11.4 131 511-644 293-426 (831)
353 COG4941 Predicted RNA polymera 79.6 28 0.00061 33.8 10.8 119 523-644 272-400 (415)
354 KOG2063 Vacuolar assembly/sort 79.5 1.2E+02 0.0025 34.5 26.5 46 136-181 310-374 (877)
355 COG3947 Response regulator con 79.5 59 0.0013 31.0 17.6 60 612-672 282-341 (361)
356 TIGR03504 FimV_Cterm FimV C-te 79.4 3 6.6E-05 26.8 3.2 23 649-671 4-26 (44)
357 PF06552 TOM20_plant: Plant sp 78.8 19 0.00042 31.6 8.8 22 559-582 97-118 (186)
358 PF07575 Nucleopor_Nup85: Nup8 78.3 38 0.00081 36.8 13.2 11 114-124 114-124 (566)
359 TIGR02561 HrpB1_HrpK type III 77.2 45 0.00097 28.4 12.9 53 164-218 21-74 (153)
360 COG4455 ImpE Protein of avirul 77.0 8.9 0.00019 34.6 6.4 74 580-653 4-81 (273)
361 PF00637 Clathrin: Region in C 76.5 1.1 2.4E-05 38.2 0.9 129 513-660 13-141 (143)
362 KOG4642 Chaperone-dependent E3 76.5 48 0.001 30.6 10.9 86 481-570 19-106 (284)
363 PF07721 TPR_4: Tetratricopept 76.3 4.2 9.1E-05 22.6 2.9 18 583-600 7-24 (26)
364 KOG2471 TPR repeat-containing 76.2 1E+02 0.0022 31.9 15.5 105 516-620 249-380 (696)
365 PF00637 Clathrin: Region in C 76.2 0.7 1.5E-05 39.5 -0.5 128 478-624 13-140 (143)
366 COG2909 MalT ATP-dependent tra 75.9 1.4E+02 0.003 33.4 34.7 229 231-462 423-684 (894)
367 KOG1586 Protein required for f 74.9 70 0.0015 29.5 20.8 148 144-324 25-182 (288)
368 PF14853 Fis1_TPR_C: Fis1 C-te 74.8 6.5 0.00014 26.6 4.0 27 646-672 3-29 (53)
369 KOG4279 Serine/threonine prote 73.8 1.4E+02 0.0029 32.8 14.8 21 621-641 378-398 (1226)
370 PF04190 DUF410: Protein of un 73.7 86 0.0019 30.0 19.7 103 145-247 2-114 (260)
371 PF07575 Nucleopor_Nup85: Nup8 73.7 1.4E+02 0.0031 32.5 16.7 30 471-500 404-433 (566)
372 KOG2471 TPR repeat-containing 73.6 70 0.0015 32.9 12.2 36 482-518 345-380 (696)
373 KOG1464 COP9 signalosome, subu 72.9 85 0.0018 29.5 18.6 248 310-567 41-328 (440)
374 TIGR02710 CRISPR-associated pr 72.3 55 0.0012 33.0 11.4 17 656-672 258-274 (380)
375 smart00028 TPR Tetratricopepti 72.2 6.4 0.00014 22.1 3.4 29 645-673 2-30 (34)
376 PF13762 MNE1: Mitochondrial s 72.0 61 0.0013 27.5 11.8 91 180-270 29-127 (145)
377 COG1747 Uncharacterized N-term 71.9 1.3E+02 0.0029 31.3 25.7 167 185-361 63-234 (711)
378 PF10255 Paf67: RNA polymerase 71.7 22 0.00048 36.0 8.6 91 545-635 78-190 (404)
379 TIGR03504 FimV_Cterm FimV C-te 71.5 9.9 0.00022 24.5 4.0 23 408-430 5-27 (44)
380 PF09670 Cas_Cas02710: CRISPR- 71.3 39 0.00084 34.4 10.5 53 517-570 141-197 (379)
381 PRK12798 chemotaxis protein; R 71.1 1.2E+02 0.0027 30.7 17.7 218 446-670 90-321 (421)
382 KOG3364 Membrane protein invol 71.0 60 0.0013 27.0 9.9 71 256-326 30-101 (149)
383 PF07163 Pex26: Pex26 protein; 70.7 59 0.0013 30.9 10.3 88 478-565 89-181 (309)
384 PRK13184 pknD serine/threonine 70.6 2.1E+02 0.0045 33.1 26.6 48 203-252 534-581 (932)
385 PF12968 DUF3856: Domain of Un 70.1 57 0.0012 26.4 11.0 55 581-635 59-126 (144)
386 PF10579 Rapsyn_N: Rapsyn N-te 69.2 31 0.00066 25.6 6.5 19 226-244 46-64 (80)
387 PF13929 mRNA_stabil: mRNA sta 69.1 1.1E+02 0.0024 29.4 17.6 119 238-357 143-263 (292)
388 PF09986 DUF2225: Uncharacteri 68.9 42 0.00092 30.9 9.3 90 552-641 87-197 (214)
389 PHA02875 ankyrin repeat protei 68.8 1.1E+02 0.0023 31.7 13.6 76 307-391 10-89 (413)
390 COG4976 Predicted methyltransf 68.6 7.9 0.00017 35.2 4.2 56 586-641 4-61 (287)
391 PF14561 TPR_20: Tetratricopep 67.7 15 0.00032 28.3 5.1 63 599-661 11-75 (90)
392 PRK10941 hypothetical protein; 67.0 58 0.0013 31.2 10.0 59 544-604 183-242 (269)
393 PF09670 Cas_Cas02710: CRISPR- 66.9 97 0.0021 31.6 12.3 57 479-536 138-198 (379)
394 PF12862 Apc5: Anaphase-promot 66.2 17 0.00036 28.2 5.3 26 647-672 44-69 (94)
395 PF09986 DUF2225: Uncharacteri 66.1 81 0.0018 29.0 10.5 93 516-608 86-196 (214)
396 PF07163 Pex26: Pex26 protein; 65.2 1E+02 0.0022 29.4 10.6 17 195-211 90-106 (309)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 64.3 54 0.0012 27.2 8.2 44 627-670 81-125 (126)
398 KOG0545 Aryl-hydrocarbon recep 63.5 1.2E+02 0.0025 28.3 10.5 97 507-605 178-292 (329)
399 PF14689 SPOB_a: Sensor_kinase 63.0 19 0.00042 25.3 4.5 20 615-634 29-48 (62)
400 smart00386 HAT HAT (Half-A-TPR 62.9 16 0.00034 21.0 3.7 29 623-652 1-29 (33)
401 PF13929 mRNA_stabil: mRNA sta 62.4 1.5E+02 0.0033 28.5 22.3 115 347-461 143-262 (292)
402 TIGR02508 type_III_yscG type I 62.1 75 0.0016 24.9 8.1 80 275-362 19-98 (115)
403 PF14853 Fis1_TPR_C: Fis1 C-te 62.1 32 0.0007 23.3 5.3 26 550-577 9-34 (53)
404 COG5159 RPN6 26S proteasome re 61.7 1.5E+02 0.0033 28.3 22.5 53 338-390 9-68 (421)
405 KOG0551 Hsp90 co-chaperone CNS 60.2 58 0.0012 31.8 8.3 92 544-635 83-179 (390)
406 PHA02875 ankyrin repeat protei 58.5 2.3E+02 0.0049 29.3 14.8 197 176-402 18-230 (413)
407 KOG0991 Replication factor C, 58.2 1.6E+02 0.0034 27.4 13.1 133 152-296 129-273 (333)
408 KOG2062 26S proteasome regulat 57.1 3E+02 0.0066 30.3 35.8 27 299-325 213-239 (929)
409 KOG2066 Vacuolar assembly/sort 56.6 3.2E+02 0.0069 30.3 33.1 102 195-308 363-467 (846)
410 KOG1308 Hsp70-interacting prot 55.9 5.8 0.00013 38.4 1.2 116 553-672 125-243 (377)
411 KOG0376 Serine-threonine phosp 55.6 15 0.00033 37.4 4.1 96 549-647 11-109 (476)
412 KOG0376 Serine-threonine phosp 55.5 25 0.00054 35.9 5.5 103 513-619 10-115 (476)
413 PF14689 SPOB_a: Sensor_kinase 55.2 31 0.00068 24.2 4.5 25 581-605 27-51 (62)
414 KOG2908 26S proteasome regulat 54.9 2.2E+02 0.0048 28.0 12.4 83 546-628 79-176 (380)
415 PF12862 Apc5: Anaphase-promot 54.6 94 0.002 24.0 7.7 24 302-325 47-70 (94)
416 COG4455 ImpE Protein of avirul 54.6 1.8E+02 0.0038 26.8 12.2 73 159-232 7-81 (273)
417 PF00244 14-3-3: 14-3-3 protei 54.4 1.9E+02 0.0041 27.2 10.9 40 408-447 7-46 (236)
418 PRK12798 chemotaxis protein; R 54.3 2.6E+02 0.0055 28.6 21.6 224 408-643 87-329 (421)
419 PRK11619 lytic murein transgly 54.0 3.5E+02 0.0075 30.0 39.2 266 145-429 91-373 (644)
420 KOG4279 Serine/threonine prote 53.5 1.8E+02 0.0039 31.9 11.3 19 413-431 377-395 (1226)
421 PF04190 DUF410: Protein of un 53.3 2.1E+02 0.0046 27.3 19.4 83 294-396 88-170 (260)
422 COG4976 Predicted methyltransf 52.9 27 0.00059 31.9 4.7 53 551-605 4-57 (287)
423 KOG2659 LisH motif-containing 52.3 1.8E+02 0.0039 26.9 9.8 107 527-637 13-131 (228)
424 PF00244 14-3-3: 14-3-3 protei 51.9 2.1E+02 0.0045 26.9 13.1 39 444-482 8-46 (236)
425 KOG0687 26S proteasome regulat 51.8 2.4E+02 0.0053 27.6 13.9 146 503-652 66-224 (393)
426 PF14561 TPR_20: Tetratricopep 51.3 1.1E+02 0.0024 23.5 9.5 50 576-625 21-74 (90)
427 KOG4507 Uncharacterized conser 50.9 1.3E+02 0.0027 32.0 9.5 151 330-483 569-721 (886)
428 cd00280 TRFH Telomeric Repeat 50.8 96 0.0021 27.5 7.5 20 586-605 120-139 (200)
429 PF04910 Tcf25: Transcriptiona 50.5 2.8E+02 0.0062 28.0 19.1 156 441-603 14-219 (360)
430 COG0735 Fur Fe2+/Zn2+ uptake r 49.8 92 0.002 26.6 7.4 63 529-592 8-70 (145)
431 PF07720 TPR_3: Tetratricopept 49.7 37 0.0008 20.8 3.6 23 646-668 3-25 (36)
432 KOG2034 Vacuolar sorting prote 49.4 4.4E+02 0.0094 29.8 33.5 73 150-240 359-433 (911)
433 TIGR02508 type_III_yscG type I 49.3 1.3E+02 0.0028 23.7 8.7 49 482-536 49-97 (115)
434 PF14669 Asp_Glu_race_2: Putat 49.2 2E+02 0.0043 25.8 14.6 55 372-426 137-205 (233)
435 COG5187 RPN7 26S proteasome re 48.8 2.5E+02 0.0055 26.9 14.3 70 331-400 114-188 (412)
436 PF11846 DUF3366: Domain of un 47.9 80 0.0017 28.4 7.4 31 330-360 142-172 (193)
437 PF14929 TAF1_subA: TAF RNA Po 47.9 3.9E+02 0.0084 28.8 25.7 48 129-176 43-90 (547)
438 KOG4077 Cytochrome c oxidase, 47.1 1.5E+02 0.0032 24.4 7.4 34 500-533 77-110 (149)
439 PF11817 Foie-gras_1: Foie gra 46.9 1E+02 0.0022 29.2 8.1 24 581-604 182-205 (247)
440 PF10366 Vps39_1: Vacuolar sor 46.8 1.2E+02 0.0025 24.4 7.1 26 405-430 42-67 (108)
441 PF12968 DUF3856: Domain of Un 46.7 1.4E+02 0.0031 24.3 7.2 63 610-673 56-129 (144)
442 PF11848 DUF3368: Domain of un 46.4 84 0.0018 20.7 5.2 31 344-374 14-44 (48)
443 cd08819 CARD_MDA5_2 Caspase ac 46.3 1.3E+02 0.0028 22.9 7.0 35 590-626 49-83 (88)
444 KOG1308 Hsp70-interacting prot 46.3 29 0.00063 33.8 4.2 118 517-637 124-243 (377)
445 KOG4521 Nuclear pore complex, 45.6 5.7E+02 0.012 30.1 15.9 86 152-240 982-1071(1480)
446 KOG4814 Uncharacterized conser 45.3 1.6E+02 0.0034 31.7 9.4 94 544-639 357-458 (872)
447 COG2178 Predicted RNA-binding 45.3 2.3E+02 0.0049 25.5 9.0 17 379-395 133-149 (204)
448 PF11848 DUF3368: Domain of un 45.1 88 0.0019 20.6 5.2 26 201-226 15-40 (48)
449 smart00777 Mad3_BUB1_I Mad3/BU 44.6 1.8E+02 0.0039 24.0 8.5 74 593-669 49-124 (125)
450 PF11846 DUF3366: Domain of un 44.4 1.1E+02 0.0023 27.6 7.6 33 538-570 140-172 (193)
451 PF10255 Paf67: RNA polymerase 44.3 1.2E+02 0.0026 30.9 8.4 160 505-670 73-267 (404)
452 cd08819 CARD_MDA5_2 Caspase ac 43.9 1.4E+02 0.0031 22.7 7.0 64 352-421 22-85 (88)
453 cd00280 TRFH Telomeric Repeat 43.2 1.7E+02 0.0037 26.0 7.9 21 445-465 119-139 (200)
454 KOG2300 Uncharacterized conser 43.2 4.1E+02 0.0089 27.7 38.1 150 518-667 334-508 (629)
455 KOG2297 Predicted translation 43.1 3.2E+02 0.007 26.5 20.2 71 413-492 266-341 (412)
456 PF11663 Toxin_YhaV: Toxin wit 42.8 29 0.00063 28.7 3.1 29 166-196 108-136 (140)
457 PF08424 NRDE-2: NRDE-2, neces 42.5 3.5E+02 0.0077 26.8 18.1 81 205-287 48-128 (321)
458 KOG3824 Huntingtin interacting 42.0 59 0.0013 31.2 5.4 61 586-647 125-187 (472)
459 PF10516 SHNi-TPR: SHNi-TPR; 41.8 57 0.0012 20.3 3.6 27 646-672 3-29 (38)
460 PF11817 Foie-gras_1: Foie gra 41.7 3.1E+02 0.0067 25.9 10.6 67 147-213 172-243 (247)
461 PRK13800 putative oxidoreducta 41.6 6.3E+02 0.014 29.5 30.1 126 505-637 754-880 (897)
462 PF11663 Toxin_YhaV: Toxin wit 41.5 30 0.00065 28.7 3.0 29 345-375 108-136 (140)
463 PRK10564 maltose regulon perip 41.3 68 0.0015 30.9 5.8 42 329-370 253-295 (303)
464 KOG0687 26S proteasome regulat 40.9 3.6E+02 0.0079 26.5 18.4 96 368-465 105-209 (393)
465 PF13762 MNE1: Mitochondrial s 40.5 2.3E+02 0.005 24.1 10.8 79 406-484 43-127 (145)
466 COG2912 Uncharacterized conser 39.5 81 0.0018 29.9 5.9 59 583-641 187-247 (269)
467 PF11838 ERAP1_C: ERAP1-like C 38.9 3.9E+02 0.0085 26.3 18.5 82 558-639 146-231 (324)
468 cd02680 MIT_calpain7_2 MIT: do 38.8 42 0.00091 24.7 3.2 18 621-638 18-35 (75)
469 KOG2297 Predicted translation 38.7 3.8E+02 0.0082 26.1 17.3 69 450-528 268-342 (412)
470 KOG0890 Protein kinase of the 38.5 9.9E+02 0.021 30.8 34.4 309 337-674 1388-1732(2382)
471 COG2178 Predicted RNA-binding 38.5 3E+02 0.0064 24.8 10.1 18 482-499 39-56 (204)
472 PF06855 DUF1250: Protein of u 38.5 75 0.0016 20.7 4.0 45 119-163 1-45 (46)
473 KOG0686 COP9 signalosome, subu 37.9 4.5E+02 0.0099 26.7 14.4 62 438-500 151-215 (466)
474 PRK13342 recombination factor 37.6 4.8E+02 0.01 27.0 17.7 153 276-430 152-333 (413)
475 KOG1524 WD40 repeat-containing 37.1 3E+02 0.0066 28.9 9.7 59 506-570 572-630 (737)
476 PF07840 FadR_C: FadR C-termin 37.1 63 0.0014 28.0 4.4 30 95-124 48-77 (164)
477 COG5108 RPO41 Mitochondrial DN 36.0 1.7E+02 0.0037 31.5 8.0 91 158-251 33-131 (1117)
478 PRK10564 maltose regulon perip 35.7 89 0.0019 30.2 5.6 36 150-185 254-289 (303)
479 PF06957 COPI_C: Coatomer (COP 34.8 2.6E+02 0.0057 28.8 9.0 32 612-643 303-334 (422)
480 PRK08691 DNA polymerase III su 34.6 5.8E+02 0.013 28.4 12.1 46 277-324 180-226 (709)
481 KOG2581 26S proteasome regulat 34.2 5.2E+02 0.011 26.3 11.9 136 538-673 120-276 (493)
482 COG0735 Fur Fe2+/Zn2+ uptake r 34.1 2.2E+02 0.0048 24.3 7.4 55 392-447 11-65 (145)
483 KOG0551 Hsp90 co-chaperone CNS 33.7 3.3E+02 0.0072 26.8 8.9 94 474-569 83-180 (390)
484 PF02847 MA3: MA3 domain; Int 33.5 2.3E+02 0.005 22.6 7.2 17 411-427 11-27 (113)
485 PF11838 ERAP1_C: ERAP1-like C 33.3 4.8E+02 0.01 25.6 19.9 83 275-361 144-230 (324)
486 KOG0128 RNA-binding protein SA 32.8 7.6E+02 0.017 27.8 38.9 54 589-642 474-530 (881)
487 KOG2422 Uncharacterized conser 32.4 6.6E+02 0.014 27.0 15.7 137 186-324 282-447 (665)
488 KOG4567 GTPase-activating prot 32.3 4.6E+02 0.01 25.6 9.5 94 492-594 263-366 (370)
489 PF09477 Type_III_YscG: Bacter 32.3 2.6E+02 0.0057 22.3 9.3 79 275-361 20-98 (116)
490 PF04762 IKI3: IKI3 family; I 32.0 8.9E+02 0.019 28.4 16.9 29 508-536 813-843 (928)
491 PF08424 NRDE-2: NRDE-2, neces 31.1 5.3E+02 0.012 25.5 18.9 46 420-466 49-94 (321)
492 PRK09462 fur ferric uptake reg 31.0 2.6E+02 0.0057 23.8 7.5 60 533-593 8-68 (148)
493 PF02184 HAT: HAT (Half-A-TPR) 30.7 1.2E+02 0.0025 18.1 3.4 21 558-580 3-23 (32)
494 PRK14956 DNA polymerase III su 29.6 7E+02 0.015 26.4 11.9 35 366-400 247-281 (484)
495 COG5187 RPN7 26S proteasome re 29.2 5.3E+02 0.012 24.9 14.9 97 402-500 115-220 (412)
496 PRK11639 zinc uptake transcrip 28.8 3.1E+02 0.0068 24.1 7.7 59 534-593 18-76 (169)
497 KOG2396 HAT (Half-A-TPR) repea 28.6 7.2E+02 0.016 26.2 37.8 210 454-675 299-527 (568)
498 KOG1839 Uncharacterized protei 28.5 6.8E+02 0.015 29.9 11.7 154 480-633 940-1123(1236)
499 PF15297 CKAP2_C: Cytoskeleton 28.4 4.5E+02 0.0097 26.2 9.0 83 577-659 103-190 (353)
500 KOG0292 Vesicle coat complex C 28.4 9.4E+02 0.02 27.5 22.9 59 522-580 1062-1122(1202)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-70 Score=618.23 Aligned_cols=552 Identities=19% Similarity=0.239 Sum_probs=477.6
Q ss_pred HHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHH-----------HHHHHHHhcCChHH
Q 044815 103 VVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQ-----------CMVSSFAEIGRLKE 171 (675)
Q Consensus 103 v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~-----------~li~~~~~~g~~~~ 171 (675)
++......+....|.++|..+... ++..+...++.++..+.+.|+++.|.++|+ .+|.+|++.|++++
T Consensus 92 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~ 170 (857)
T PLN03077 92 LFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170 (857)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHH
Confidence 344444445566777777776644 344566677788888888888888887654 56788888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHH-----------------------------------HHHHHHHHhcCChhHHHHHHHHHhh
Q 044815 172 GFSMVIEMTNNGLPLITSTL-----------------------------------NRVVGIACELGLVEYAEEVFDEMCA 216 (675)
Q Consensus 172 A~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~ 216 (675)
|+.+|.+|...|+.||..|| +.++.+|++.|++++|.++|++|.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~- 249 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP- 249 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-
Confidence 88888888877777765555 666777788899999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCh
Q 044815 217 RGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNV 296 (675)
Q Consensus 217 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (675)
.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++. |+++.|.+++..|.+.|+.||.
T Consensus 250 ---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~---g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 250 ---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL---GDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred ---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCccch
Confidence 4688999999999999999999999999999999999999999999999997 7899999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYG 376 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 376 (675)
.+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 999999999999999999999999884 489999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQA 456 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 456 (675)
|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999885 46777888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------------------CCC
Q 044815 457 LGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL------------------------------FPT 506 (675)
Q Consensus 457 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------------~~~ 506 (675)
+.+|++|.. ++.||..+|+.++.+|++.|+++.+.+++..+.+.|+ .||
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d 553 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD 553 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 888888875 4677777776666555444444444444444433332 478
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMI-GKGISPCEVTRVTLAY 585 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~ 585 (675)
..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|..++.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999998 6799999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 044815 586 EYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
+|++.|++++|.+++++|..+|+..+|++|+.+|...|+.+.|....+++++..|+ +...|..+.++|...|+|++|.+
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999988889999999999999999999999999999999888 88899999999999999999999
Q ss_pred HHHHHHhc
Q 044815 666 LSQRIAEG 673 (675)
Q Consensus 666 ~~~~~~~~ 673 (675)
+.+.+.++
T Consensus 713 vr~~M~~~ 720 (857)
T PLN03077 713 VRKTMREN 720 (857)
T ss_pred HHHHHHHc
Confidence 99988764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.6e-70 Score=610.74 Aligned_cols=550 Identities=18% Similarity=0.203 Sum_probs=519.4
Q ss_pred HHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHH---------------HHHHHHHH
Q 044815 100 AITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVM---------------QCMVSSFA 164 (675)
Q Consensus 100 ~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~---------------~~li~~~~ 164 (675)
...++..+...+.+..|+.+|..+... +..++..+|..++..+.+.+.++.+..++ +.++..|+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 344566677778899999999998764 45667778888888888888888877665 46788999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044815 165 EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADR 244 (675)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 244 (675)
+.|+++.|+.+|++|. ++|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.++++.++++.+.+
T Consensus 133 ~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 9999999999999996 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 245 WLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 245 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
++..|.+.|+.||..+|+.++.+|++. |++++|.++|++|. .||..+||.+|.+|++.|+.++|+++|.+|.+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998 79999999999986 46999999999999999999999999999865
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHH
Q 044815 325 SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYA 404 (675)
Q Consensus 325 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 404 (675)
.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+
T Consensus 282 -~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 282 -LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred -cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 679999999999999999999999999999999999999999999999999999999999999999997 478999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 9999999999999865 6889999999999999999999999999986 5899999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 565 YESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 565 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
+..+.+.|+.+|..+++.|+.+|+++|++++|.++|+.+ .++..+||+++.+|++.|+.++|+++|++|.+.|..||.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999999998 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.||..++.+|.+.|++++|.++++.+.+.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999853
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-68 Score=584.36 Aligned_cols=509 Identities=18% Similarity=0.246 Sum_probs=445.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 044815 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGL-PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAY 233 (675)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 233 (675)
.+..++..+++.|++++|+++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.+|.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 344566777888999999999999988885 46777788888899999999999999988863 8899999999999
Q ss_pred HHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 044815 234 CRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTE 313 (675)
Q Consensus 234 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 313 (675)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKE--QGLLPNTNTYTSLIYGHCKVGNFERAYDLMD 391 (675)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (675)
+|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 525 eAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 525 KAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988854 67889999999999999999999999999999976 5788999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 044815 392 LMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD 471 (675)
Q Consensus 392 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 471 (675)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG 551 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 551 (675)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999988999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcC-------------------CHHHHHHHHHHHhh---
Q 044815 552 LCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYC----KQG-------------------DSATAMIILESLDK--- 605 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~~--- 605 (675)
|++.|++++|.+++++|.+.|+.||..+|+.++..+. +++ ..++|..+|++|..
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999888888775432 222 23678888888877
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.|+..+|+.++.++++.+..+.+..+++.+...+..|+..+|+.++.++.+. .++|..+++.+.+.
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 4688889998888888888889988888888888888889999999887432 25799988888763
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-67 Score=580.44 Aligned_cols=478 Identities=18% Similarity=0.265 Sum_probs=450.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR 238 (675)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 238 (675)
++..|.+.|..++|+.+|..|.. |+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~ 487 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC
Confidence 45567888999999999988864 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 044815 239 VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRL 318 (675)
Q Consensus 239 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 318 (675)
+++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~---G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARA---GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 044815 319 FLKLVRS-DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEG 397 (675)
Q Consensus 319 ~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (675)
|++|... .++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9999753 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 398 CTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTT 477 (675)
Q Consensus 398 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 477 (675)
+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~ 724 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK--- 554 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 554 (675)
||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred -c-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CChhh
Q 044815 555 -Q-------------------SKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK---LWIRT 611 (675)
Q Consensus 555 -~-------------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 611 (675)
. +..++|..+|++|.+.|+.||..||..++.++++.+..+.+..+++.+... ++..+
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~ 884 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhh
Confidence 1 124679999999999999999999999998899999999999999988654 46789
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
|+++++++.+. .++|..++++|.+.|+.|+..
T Consensus 885 y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 885 LSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999998442 468999999999999998875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8e-63 Score=541.22 Aligned_cols=469 Identities=20% Similarity=0.250 Sum_probs=296.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARG-VCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
+...|+.++..+.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34455556666666666666666666665432 45566666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 266 TAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKE 345 (675)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 345 (675)
..|++. |++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+ .|..||..+|+.++.++++.
T Consensus 166 ~~y~k~---g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 166 LMHVKC---GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHhcC---CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcC
Confidence 666655 45666666666653 24666666666666666666666666666643 34566666666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 346 EKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELL 425 (675)
Q Consensus 346 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 425 (675)
|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.+ +|..+||.++.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666642 45666666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044815 426 KKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP 505 (675)
Q Consensus 426 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (675)
++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666643 5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIG-KGISPCEVTRVTLA 584 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~ 584 (675)
|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|..++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 66666666666666666666666666666666666666666666666666666666666666654 46666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 044815 585 YEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
.+|++.|++++|.++++++...|+..+|++++.+|+..|+++.|..+++++++.+|. +..+|..++++|.+.|+|++|.
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHH
Confidence 666666666666666666655566666666666666666666666666666665554 4556666666666666666666
Q ss_pred HHHHHHHh
Q 044815 665 DLSQRIAE 672 (675)
Q Consensus 665 ~~~~~~~~ 672 (675)
++++++.+
T Consensus 549 ~v~~~m~~ 556 (697)
T PLN03081 549 KVVETLKR 556 (697)
T ss_pred HHHHHHHH
Confidence 66666554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-62 Score=537.94 Aligned_cols=505 Identities=18% Similarity=0.219 Sum_probs=453.9
Q ss_pred HHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 100 AITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEM 179 (675)
Q Consensus 100 ~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (675)
...++..+...+.+..|+++|.|+....++.++..+| ..++.++.+.++++.|.+++..|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~--------------------~~ll~a~~~~~~~~~a~~l~~~m 149 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTY--------------------DALVEACIALKSIRCVKAVYWHV 149 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHH--------------------HHHHHHHHhCCCHHHHHHHHHHH
Confidence 3355666777888999999999998776666655555 45666677788888888899999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHH
Q 044815 180 TNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNA 259 (675)
Q Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 259 (675)
.+.|+.||..+|+.++..|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+.|..|+..
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 999999999999999999999999999999999996 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMI 339 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 339 (675)
+|..++.++++. |..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|. .+|..+||.+|
T Consensus 226 t~~~ll~a~~~~---~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li 297 (697)
T PLN03081 226 TFVVMLRASAGL---GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSML 297 (697)
T ss_pred hHHHHHHHHhcC---CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHH
Confidence 999999999997 7899999999999999999999999999999999999999999999884 47999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQ 419 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 419 (675)
.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 420 EAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 420 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
+|.++|++|. .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.
T Consensus 378 ~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999985 579999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 044815 500 T-AGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-E 577 (675)
Q Consensus 500 ~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~ 577 (675)
+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|+..|+++.|..+++++.+ +.|+ .
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~ 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC
Confidence 6 589999999999999999999999999999876 4789999999999999999999999999999976 5564 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCC----ChhhHHHH-------HHHHHc----cCCHHHHHHHHHHHhcCCCCC
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDKKL----WIRTVNTL-------IRKLCS----EKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l-------~~~~~~----~g~~~~A~~~~~~~~~~~~~p 642 (675)
.+|..++..|++.|++++|.++++.|.++. ...+|..+ +.+-.. ..-++...++..+|.+.|..|
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 688999999999999999999999998742 11122111 000000 111345567788888999888
Q ss_pred CHH
Q 044815 643 DRV 645 (675)
Q Consensus 643 ~~~ 645 (675)
|..
T Consensus 609 ~~~ 611 (697)
T PLN03081 609 EEN 611 (697)
T ss_pred Ccc
Confidence 743
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-34 Score=329.62 Aligned_cols=541 Identities=16% Similarity=0.108 Sum_probs=419.3
Q ss_pred cChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHH--------------HHHHhcCChHHHHHHH
Q 044815 111 AGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMV--------------SSFAEIGRLKEGFSMV 176 (675)
Q Consensus 111 ~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li--------------~~~~~~g~~~~A~~~~ 176 (675)
+.+..|+..+..+.... +.....+..++..+...|++++|.+.|+.++ ..+...|++++|...+
T Consensus 343 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 44445555554443322 2233445555666666666666666555432 2455566666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCC
Q 044815 177 IEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAIL 256 (675)
Q Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 256 (675)
..+.+.+ +........++..+.+.|++++|.++++.+... .+.+..+|..+...+...|++++|...|+++.+... .
T Consensus 421 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 497 (899)
T TIGR02917 421 ETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-D 497 (899)
T ss_pred HHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C
Confidence 6666544 223344455566667777777777777777654 345677788888888888888888888888876532 2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 044815 257 DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYT 336 (675)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 336 (675)
+...+..+...+... |++++|.+.++++...+. .+..++..+...+.+.|+.++|...+.++.+.. +.+...+.
T Consensus 498 ~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 571 (899)
T TIGR02917 498 FFPAAANLARIDIQE---GNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPAL 571 (899)
T ss_pred cHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHH
Confidence 445556666666665 788888888888877643 367778888888888888888888888886643 45566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044815 337 AMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 416 (675)
.++..+.+.|++++|..+++++.+. .+.+..+|..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 8888888899999999999888764 34467888889999999999999999999888764 456777888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQ 496 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 496 (675)
++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988753 4567788889999999999999999999988875 5577788888899999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 497 EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
++...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++++... ++
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CC
Confidence 998865 555778888999999999999999999988753 44677888889999999999999999999998542 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC 654 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 654 (675)
...+..++..+.+.|+ .+|+.+++++.. +.+...+..++..+...|++++|.++++++++.+|. +..++..++.++
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 881 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALAL 881 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Confidence 5677889999999999 889999998765 346677888999999999999999999999999998 999999999999
Q ss_pred HhcCchhHHHHHHHHHHh
Q 044815 655 YESNKYALFSDLSQRIAE 672 (675)
Q Consensus 655 ~~~g~~~~A~~~~~~~~~ 672 (675)
.+.|++++|.++++++++
T Consensus 882 ~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 882 LATGRKAEARKELDKLLN 899 (899)
T ss_pred HHcCCHHHHHHHHHHHhC
Confidence 999999999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.2e-33 Score=319.97 Aligned_cols=493 Identities=15% Similarity=0.100 Sum_probs=317.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
.+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+......++..+.+.|++++
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHH
Confidence 3344444444444444444332 2233334444444444444444444444444332 1122233334444555555555
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 242 ADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 242 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
|..+++++.... ..+..++..+...+... |++++|.+.|+++.+... .+...+..++..+...|++++|.+.|++
T Consensus 450 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 450 ALAAAKKLEKKQ-PDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554431 22444555555555554 566666666666655432 2344555566666666666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 044815 322 LVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN 401 (675)
Q Consensus 322 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 401 (675)
+++.. +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+
T Consensus 525 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 600 (899)
T TIGR02917 525 VLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS 600 (899)
T ss_pred HHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 65432 3455566666666666677777777776666543 2345556666677777777777777777766543 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 6677777777777777777777777776643 3455566677777777777777777777776653 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|.++++.+.+... .+...+..+...+...|++++|...++++... .|+..++..++.++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777776643 45666777777777888888888888887764 35556666777778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCC
Q 044815 562 CQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
.+.++++++.. +.+...+..++..|.+.|++++|...|+++.+ +++...++.++..+.+.|+ ++|+.+++++++..
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 88888877743 22455667778888888888888888888755 3456677888888888888 77888888888887
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 640 QNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 640 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|. +..++..++.++...|++++|.++++++++.
T Consensus 834 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 834 PN-IPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77 7778888888888888888888888888763
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.9e-25 Score=257.68 Aligned_cols=560 Identities=14% Similarity=0.064 Sum_probs=343.5
Q ss_pred hHHHHHHHHHHhhhcChhHHHHHHHHhhhC-CCCcchhh-------------hHHHHHHHHHhCCChhHHHHHHHHHHH-
Q 044815 97 HEQAITVVASLANEAGSMVALSFFYWAIGF-AKFRHFMR-------------LYIVCATSLISNGNFERAHEVMQCMVS- 161 (675)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~al~~f~~~~~~-~~~~~~~~-------------~y~~~~~~l~~~~~~~~a~~~~~~li~- 161 (675)
++............++.+.|.+.++.+... |+...... .....+..+...|++++|...|+.++.
T Consensus 62 p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 62 PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 444444444445667888999988766544 43322111 123445577788999999888886543
Q ss_pred ---------HHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHH
Q 044815 162 ---------SFA-----EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD--ASS 225 (675)
Q Consensus 162 ---------~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 225 (675)
.|. ..|+.++|+..++++.+.. |.+...+..+...+...|+.++|++.++++.+...... ...
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~ 220 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQL 220 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHH
Confidence 122 2488889999999988875 56777888888888889999999999988865321000 000
Q ss_pred H-----------------HHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044815 226 Y-----------------KLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMV 288 (675)
Q Consensus 226 ~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 288 (675)
| ...+..+-.....+.|...+.++......|+.... ..-..+... |++++|+..|++..
T Consensus 221 ~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~-~~G~~~~~~---g~~~~A~~~l~~aL 296 (1157)
T PRK11447 221 WYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR-AQGLAAVDS---GQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH-HHHHHHHHC---CCHHHHHHHHHHHH
Confidence 1 00011111111123344444443332222221111 111222332 67777777777777
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHH
Q 044815 289 RKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYT------------AMISGYCKEEKMNRAEMLLE 356 (675)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~A~~~~~ 356 (675)
+... .+..++..+...+.+.|++++|+..|++.++...-.++...|. .....+.+.|++++|+..|+
T Consensus 297 ~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6532 2566777777777777777777777777765432222211111 12334566777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH-------------------------
Q 044815 357 RMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDG------------------------- 411 (675)
Q Consensus 357 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~------------------------- 411 (675)
++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 376 ~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 376 QARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 777652 2245566667777777777777777777777653 2334444444433
Q ss_pred -----------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044815 412 -----------------LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHA 474 (675)
Q Consensus 412 -----------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 474 (675)
+...|++++|.+.|++.++.. +.+...+..+...+.+.|++++|...++++.+.. +.+...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 334455555555555555432 1233444445555555555555555555555432 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK---------ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITY 545 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 545 (675)
+..+...+...++.++|...++.+......++. ..+..+...+...|+.++|..+++. .+++...+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~ 606 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID 606 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence 333333344455555555555443321111111 1122334556667777777777662 23445567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHcc
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSE 622 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~ 622 (675)
..+...+.+.|++++|+..|+++++. .|+ ......++..|...|++++|++.++.+.+. .+...+..++.++.+.
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 77888899999999999999999984 454 567788999999999999999999987753 4566678888899999
Q ss_pred CCHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 623 KRVGMAALFFHKLLGKDQNV-----DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|++++|.+++++++...+.. +...+..++.++...|++++|.+.+++++..
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999998876542 2356777899999999999999999999753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.3e-24 Score=250.91 Aligned_cols=548 Identities=14% Similarity=0.035 Sum_probs=362.7
Q ss_pred hhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH---------------------------
Q 044815 109 NEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS--------------------------- 161 (675)
Q Consensus 109 ~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~--------------------------- 161 (675)
..++++.|.+.+..+.... +.+...+..++..+...|+.++|...++.++.
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 3456677777777665432 22466677888888999999999887775422
Q ss_pred ---HHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044815 162 ---SFAEIGRLKEGFSMVIEMTNNGLPLITS-TLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMG 237 (675)
Q Consensus 162 ---~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 237 (675)
.+...|++++|++.|+.+.+.+ +++.. ............|+.++|++.++++.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 4678899999999999998765 44432 22222222334699999999999999874 446778888889999999
Q ss_pred CHHHHHHHHHHHhHCCCCC----------------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 238 RVTEADRWLSAMLDRGAIL----------------DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 238 ~~~~A~~~~~~m~~~g~~~----------------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
+.++|+..++++....... +......+............++.|...+..+......|+.. ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHH
Confidence 9999999999987642110 00000011111111111123455666666554433233322 224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH----------
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP-NTNTY---------- 370 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~---------- 370 (675)
....+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+..... +...+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 4677888999999999999998754 3477889999999999999999999999998753321 11112
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 044815 371 --TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH- 447 (675)
Q Consensus 371 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~- 447 (675)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++++..+ .+...+..+...+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 122456778999999999999999874 45677888899999999999999999999987642 3344444444443
Q ss_pred -----------------------------------------HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 448 -----------------------------------------LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK 486 (675)
Q Consensus 448 -----------------------------------------~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 486 (675)
...|++++|+..+++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 23444444444444444432 123334444444444555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 044815 487 KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI---------TYGALISGLCKQSK 557 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~g~ 557 (675)
++++|...++++.+... .+...+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 55555555554444321 122222223333344444555554444432211111110 11223445566677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
+++|..+++. ...+...+..++..|.+.|++++|+..|+++.. +.+...+..++..|...|++++|++.++++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777766651 223445667788999999999999999999765 446778899999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 636 LGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 636 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
++..|. +..++..++.++...|++++|.++++++++.
T Consensus 664 l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 664 PATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 888877 7788888999999999999999999998763
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2e-21 Score=213.99 Aligned_cols=538 Identities=12% Similarity=0.059 Sum_probs=383.4
Q ss_pred hhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH----------HHHhcCChHHHHHHHH
Q 044815 108 ANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS----------SFAEIGRLKEGFSMVI 177 (675)
Q Consensus 108 ~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~----------~~~~~g~~~~A~~~~~ 177 (675)
...+++..|+..|+.+....+ .+..++..++..+...|++++|....+..+. .+...+++++|..+++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye 132 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVE 132 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHH
Confidence 334778899999999876543 2377788999999999999999988876443 2355599999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHH
Q 044815 178 EMTNNGLPLITSTLNRVVGI--------ACELGLVEYAEEVFDEMCARGVCADASSYKLM-VVAYCRMGRVTEADRWLSA 248 (675)
Q Consensus 178 ~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 248 (675)
++.... |-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.++.+
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999986 5566777666665 5555 55555555 3333334456655555 8899999999999999999
Q ss_pred HhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 044815 249 MLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY 328 (675)
Q Consensus 249 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 328 (675)
+.+.+.. +..-...+-..|... .++ +++..+++. .++-+......+...|.+.|+.++|.+++.++.....-
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~--l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAG--QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHh--hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9998644 444455555666662 134 777777553 23357888899999999999999999998776332211
Q ss_pred CCCHHHHHH------------------------------HHHHHHhcCChHHHHHHH-----------------------
Q 044815 329 KPNVHTYTA------------------------------MISGYCKEEKMNRAEMLL----------------------- 355 (675)
Q Consensus 329 ~~~~~~~~~------------------------------li~~~~~~~~~~~A~~~~----------------------- 355 (675)
.|+..+|-- ++..+.+.++++.++++.
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 222222211 133444555555444332
Q ss_pred ------HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 044815 356 ------ERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE-G-CTPNIYAYNAIIDGLCKKGR---VQEAYEL 424 (675)
Q Consensus 356 ------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~ 424 (675)
..|.+. .+-+.....-+.-...+.|+.++|..+++..... + -.++.....-++..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 111111 0002222222222345678888999988887662 1 12344555577777777665 3333222
Q ss_pred -------------------------HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 425 -------------------------LKKAFQRELQA--DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTT 477 (675)
Q Consensus 425 -------------------------~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 477 (675)
+...... .++ +...|..+..++.. ++.++|+..+.+.... .|+......
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 1122211 123 56778888877776 8888999988887765 466554445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQS 556 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 556 (675)
+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. |+ ...+..+...+...|
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 555667899999999999998664 3455566777888899999999999999998753 44 333444444555679
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 557 KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 557 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
++++|...+++.++ +.|+...+..++.++.+.|+.++|+..+++... +.+...++.++.++.+.|++++|+.+|++
T Consensus 591 r~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 QPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999998 567777888899999999999999999999766 44677889999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 635 LLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 635 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+++..|. +...+..++.++...|++++|+..++++++
T Consensus 669 AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 669 AHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998 899999999999999999999999999876
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=7.4e-24 Score=206.38 Aligned_cols=394 Identities=15% Similarity=0.142 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH-
Q 044815 258 NATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYT- 336 (675)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 336 (675)
..+|..+...+-.. |++++|+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+.++- .|+.....
T Consensus 116 ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s 188 (966)
T KOG4626|consen 116 AEAYSNLANILKER---GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhc
Confidence 34555555555443 5566666666666654322 4556666777777777777777777666552 35544333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHh
Q 044815 337 AMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN-IYAYNAIIDGLCK 414 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 414 (675)
.+...+...|++++|...|.+.++. .|. ...|+.|...+-..|+...|+.-|++..+. .|+ ...|-.|...|..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 2333344467777777777666653 233 345666666666777777777777777665 333 5566777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 415 KGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKF 494 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (675)
.+.+++|...+.+..... +...+.+..+...|..+|..+.|+..+++.++.. +--...|+.|..++-..|++.+|.+.
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 777777777777766532 2334456666666777777777777777777753 22467788888888888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 495 FQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGI 573 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 573 (675)
+.+.+.... -.....+.|...|...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|+..|++.++ +
T Consensus 343 YnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 343 YNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 888887532 2456778888888888888888888888877 4565 45788888888888999999998888888 7
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 574 SPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 574 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
.|+. ..+..++..|-..|+.+.|++.+.+... .| .....+.|+..|...|+..+|+.-|+.+++..|+ -+..+..+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNl 496 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNL 496 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHH
Confidence 7764 5667788888888888888888888655 33 4567788999999999999999999999999987 56677777
Q ss_pred HHHHHhcCchhHHHHHHHHH
Q 044815 651 KNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 651 ~~~~~~~g~~~~A~~~~~~~ 670 (675)
+.++--..+|.+-.+.++|+
T Consensus 497 lh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 497 LHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHHHHhcccchHHHHHHH
Confidence 77766666666544444443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-20 Score=193.34 Aligned_cols=546 Identities=13% Similarity=0.087 Sum_probs=409.2
Q ss_pred hhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH---------------HHHhcCChHHHHHHHH
Q 044815 113 SMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS---------------SFAEIGRLKEGFSMVI 177 (675)
Q Consensus 113 ~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~---------------~~~~~g~~~~A~~~~~ 177 (675)
.+.|.+-|+++.++.+- +.....--+.+....++|..|..+|..++. ++.+.|+.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 46899999999877532 333333345666778999999999997544 6779999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCC
Q 044815 178 EMTNNGLPLITSTLNRVVGIACEL---GLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGA 254 (675)
Q Consensus 178 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 254 (675)
..++.+ |.++.++..|.-.-... ..+..+...+...-..+ .-|+...+.|...|.-.|++..++.+..-+.....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 999976 34444444443332222 34666777777766543 45888999999999999999999999999887542
Q ss_pred CC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 044815 255 IL--DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV 332 (675)
Q Consensus 255 ~~--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 332 (675)
.- -...|--+-+++-.. |++++|...|.+..+....--+..+..|..+|.+.|+++.+...|+++.+.. +-+.
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~---Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQ---GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchH
Confidence 11 123355566666665 8999999999988876433224456678899999999999999999998754 4455
Q ss_pred HHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----hhcCCCCCHHH
Q 044815 333 HTYTAMISGYCKEE----KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLM----GKEGCTPNIYA 404 (675)
Q Consensus 333 ~~~~~li~~~~~~~----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~ 404 (675)
.+...+...|...+ ..+.|..++.+..+.- +.|...|..+...+....- ..++..|..+ ...+-.+.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 67777777776654 5677888888877753 4478888888877765444 3336666543 44565688899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAFQR---ELQADK------ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAY 475 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 475 (675)
.|.+...+...|++++|...|.+.... ...+|. .+-..+...+...++.+.|.+.|..+.+.. +.-+..|
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~y 533 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAY 533 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHH
Confidence 999999999999999999999998765 122333 233345667777889999999999999862 3345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG-CAPDNITYGALISGLC- 553 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~- 553 (675)
..++.+....+...+|...+.+....+ ..++..++.+...+.+...+..|.+-|+...+.- ..+|..+...|.+.|.
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 666655555688999999999998764 3567778888889999989999988777665532 2367777667777553
Q ss_pred -----------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHH
Q 044815 554 -----------KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLC 620 (675)
Q Consensus 554 -----------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~ 620 (675)
..+..++|+++|.+.++.... |...-+.++-.++..|++++|..+|.++... ....+|-.++.+|.
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 234577899999999884321 3455577889999999999999999998773 36778999999999
Q ss_pred ccCCHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 621 SEKRVGMAALFFHKLLGKD-QNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..|++..|+++|+.+++.- +.-+...+..|+.++++.|++.+|.+.+.+++.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999988764 455788999999999999999999999988865
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-22 Score=197.36 Aligned_cols=434 Identities=16% Similarity=0.166 Sum_probs=256.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044815 163 FAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEA 242 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 242 (675)
..+.|++++|.+.-..+-..+ +.+......+-..+.+..+++....--....+. .+.-..+|..+...+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHH
Confidence 344555555555444443332 333344444444455555555443333222222 133455666666666666666666
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 243 DRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVY-THTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 243 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
+.+|+.+++.... ....|..+..++... |+.+.|.+.|.+..+. .|+.. ..+.+...+-..|++++|...+.+
T Consensus 136 l~~y~~aiel~p~-fida~inla~al~~~---~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 136 LALYRAAIELKPK-FIDAYINLAAALVTQ---GDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHhcCch-hhHHHhhHHHHHHhc---CCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 6666666664321 344555555555554 5666666666666554 23322 233344444556677777666666
Q ss_pred HHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 044815 322 LVRSDNYKPN-VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCT 399 (675)
Q Consensus 322 ~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (675)
.++.. |. ...|+.|...+...|+...|+..|++.+. +.|+ ...|..|...|...+.+++|...|.+..... +
T Consensus 210 Ai~~q---p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 210 AIETQ---PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHhhC---CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 65532 32 34566666666667777777777776665 3444 4566666666766777777777666665542 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 400 PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLI 479 (675)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 479 (675)
...++|..+.-.|...|.+|.|+..+++.++.. +.-...|+.|..++-..|++.+|...+.+..... +......+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 345566666666667777777777777766642 2234566777777777777777777777666652 33455666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 044815 480 AAFCRQKKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSK 557 (675)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 557 (675)
..+...|.+++|..+|....+- .|. ....+.|...|-.+|++++|+..|++.+. +.|+ ...|+.+...|-..|+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 7777777777777777766663 233 34566667777777777777777777665 5565 4467777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CC-ChhhHHHHHHH
Q 044815 558 LDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KL-WIRTVNTLIRK 618 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 618 (675)
.+.|.+.+.+++. +.|.- ..+..|+..|-..|++.+|++-++...+ +| .+..|..++.+
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 7777777777766 44543 4556677777777777777777776554 22 34445444433
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.4e-19 Score=199.53 Aligned_cols=546 Identities=12% Similarity=0.021 Sum_probs=384.8
Q ss_pred hHHHHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH------------HHH
Q 044815 97 HEQAITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS------------SFA 164 (675)
Q Consensus 97 ~~~~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~------------~~~ 164 (675)
+.....+...+...+.+..|+..+..+....+ .+...+..++. -+++++|..+|+.++. +..
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~La~----i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~ 151 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSLAA----IPVEVKSVTTVEELLAQQKACDAVPTLRCRS 151 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHHHH----hccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 33334444445666788899999988876543 33333333322 2888999999887654 111
Q ss_pred -------hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-
Q 044815 165 -------EIGRLKEGFSMVIEMTNNGLPLITSTLNRV-VGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCR- 235 (675)
Q Consensus 165 -------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 235 (675)
.-.++++|.+.++ .......|+..+.... .+.|.+.|++++|++++.++.+.+ +.+......|..+|..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAG 229 (987)
T ss_pred hhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 1344566666666 4333333445545544 889999999999999999999875 3455656777778887
Q ss_pred cCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC-CChhh----------------
Q 044815 236 MGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWK-PNVYT---------------- 298 (675)
Q Consensus 236 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~---------------- 298 (675)
.++ +++..+++.. ..-+......+...+.+. |+.++|.++++++...-.. |...+
T Consensus 230 l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~---G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 230 QLD-DRLLALQSQG----IFTDPQSRITYATALAYR---GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred hCH-HHHHHHhchh----cccCHHHHHHHHHHHHHC---CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 466 7777775532 224777888888888887 7888888888876543111 11111
Q ss_pred --------------HHHHHHHHHhcCCHHHHHHHH-----------------------------HHHHhcCCCCCCHHHH
Q 044815 299 --------------HTVLIDGLCKKGWTEKAFRLF-----------------------------LKLVRSDNYKPNVHTY 335 (675)
Q Consensus 299 --------------~~~l~~~~~~~g~~~~A~~~~-----------------------------~~~~~~~~~~~~~~~~ 335 (675)
...++..+.+.++++-+.++. ..+.+.. +-+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l 379 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRL 379 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHH
Confidence 112244555566665554442 1111110 1233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---------------------
Q 044815 336 TAMISGYCKEEKMNRAEMLLERMKEQ-G-LLPNTNTYTSLIYGHCKVGN---FERAYDL--------------------- 389 (675)
Q Consensus 336 ~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~---~~~A~~~--------------------- 389 (675)
..+.-...+.|+.++|.++|+..... + ..++.....-++..|.+.+. ..++..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 44444556789999999999998762 1 22344555577777777665 3333222
Q ss_pred -HHHHhh-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 390 -MDLMGK-EGC-TP--NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 390 -~~~m~~-~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
++.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 111111 111 34 67788888888887 89999999888887753 555554455666678999999999999986
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT 544 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 544 (675)
.. +|+...+..+...+.+.|+.++|...+++..+... .+...+..+.....+.|++++|...+++..+ ..|+...
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a 611 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANA 611 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHH
Confidence 64 45555667778889999999999999999998652 2333344444455566999999999999998 4578889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHc
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCS 621 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 621 (675)
|..+..++.+.|++++|+..+++.++ ..|+. ..+..++..+...|+.++|+..+++..+ +.+...+..++.++..
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999 55654 5667889999999999999999999765 4577889999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.|++++|+..|+++++..|+ +..+....++...+..+++.|.+.+++..
T Consensus 690 lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998 77888889999999999999988877654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.2e-19 Score=197.04 Aligned_cols=396 Identities=13% Similarity=0.021 Sum_probs=296.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMI 339 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 339 (675)
.+...-..+.+. |++++|+..|++.++. .|+...|..+..+|.+.|++++|++.+.+.++.. +.+...|..+.
T Consensus 129 ~~k~~G~~~~~~---~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a 201 (615)
T TIGR00990 129 KLKEKGNKAYRN---KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 444555666665 8999999999998875 5678889999999999999999999999998754 34677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH----------------
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIY---------------- 403 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---------------- 403 (675)
.+|...|++++|+..|......+-..+.. ...++..+........+...++.-... .|...
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEN--LPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHccCCcchh
Confidence 99999999999999988776543222222 222222221111112222222110000 00000
Q ss_pred --------------HHHHHHHH---HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 404 --------------AYNAIIDG---LCKKGRVQEAYELLKKAFQRE--LQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 404 --------------~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
.+..+... ....+++++|.+.|++.++.+ .+.....|..+...+...|++++|+..+++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00001100 012468999999999998764 23345678888889999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NI 543 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 543 (675)
+.. +.....|..+...+...|++++|...|+++++... .+...|..+...+...|++++|+..|++..+. .|+ ..
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~ 434 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIF 434 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHH
Confidence 863 33467888999999999999999999999988753 45788999999999999999999999999885 454 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC-hhh-------HH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK-LW-IRT-------VN 613 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~-------~~ 613 (675)
.+..+..++.+.|++++|+..|++.++ ..|+ ...+..++..|...|++++|++.|++.... +. ... ++
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 788888899999999999999999988 3454 567788999999999999999999996652 21 111 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..+..+...|++++|..+++++++.+|. +...+..++.++.+.|++++|.++++++++
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222334479999999999999999987 778899999999999999999999999875
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1e-18 Score=180.11 Aligned_cols=530 Identities=14% Similarity=0.091 Sum_probs=396.5
Q ss_pred hhcChhHHHHHHHHh-hhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH-----------------HHHhcCChH
Q 044815 109 NEAGSMVALSFFYWA-IGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS-----------------SFAEIGRLK 170 (675)
Q Consensus 109 ~~~~~~~al~~f~~~-~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~-----------------~~~~~g~~~ 170 (675)
+.+++..|+.+|..+ +.+|.+..++++ .++..+.+.++.+.|...|...++ .+-....+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 346778899999886 445556555543 567788888998888877775432 122334456
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 171 EGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVC--ADASSYKLMVVAYCRMGRVTEADRWLSA 248 (675)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 248 (675)
.++.++...-..+ +-++.+.+.|.+.|.-.|++..++.+.+.+...... .-..+|..+.++|...|++++|..+|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 6777777766654 578889999999999999999999999998875311 1245688899999999999999999998
Q ss_pred HhHCCCCCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHH
Q 044815 249 MLDRGAILDN--ATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKG----WTEKAFRLFLKL 322 (675)
Q Consensus 249 m~~~g~~~~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 322 (675)
..+.. ++. ..+--+...+.+. |+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.
T Consensus 333 s~k~~--~d~~~l~~~GlgQm~i~~---~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 333 SLKAD--NDNFVLPLVGLGQMYIKR---GDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHccC--CCCccccccchhHHHHHh---chHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 87653 444 3334455666665 89999999999998863 336677777888887775 567888888877
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--
Q 044815 323 VRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM----KEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE-- 396 (675)
Q Consensus 323 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 396 (675)
.+.. +.|...|-.+...+-... ...++..|... ...+-.+.+...|.+...+...|++++|...|+.....
T Consensus 407 ~~~~--~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 407 LEQT--PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred Hhcc--cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 6643 567778887777766544 44446666554 34566678889999999999999999999999987654
Q ss_pred -CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 044815 397 -GCT------PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-TYTILLSEHLKQAETKQALGLFCRMVKAGL 468 (675)
Q Consensus 397 -g~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 468 (675)
-.. +++.+-..+...+-..++++.|.+.|..+++. .|.-+ .|-.++......+...+|...++.....+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 112 23334445777777888999999999999886 34433 33334433344578889999999888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHH------------cCCHHHHHHHHHHHHH
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAG-LFPTKETYTSMICGYLR------------DGNISSAVKYFQRMNQ 535 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~ 535 (675)
..++..+..+...+.+...+..|.+-|..+.+.- ..+|..+.-+|.+.|.+ .+..++|+++|.+..+
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 5567777878888999999999999887776542 23566777777776653 2457889999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CChhh
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK----LWIRT 611 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 611 (675)
.. +-|...-|.+.-.++..|++.+|..+|.+..+.... +..++..++.+|..+|++..|+++|+...++ .+..+
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 53 335667777888899999999999999999986541 3357888999999999999999999997653 46778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
...|++++.+.|++.+|.+.+..++...|. |......++.+..+
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHHHHH
Confidence 899999999999999999999999999998 66665555555443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.4e-18 Score=186.87 Aligned_cols=360 Identities=12% Similarity=-0.007 Sum_probs=172.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 044815 156 MQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCR 235 (675)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 235 (675)
+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566788888888888888888775 3677778888888888888888888888888763 3456778888888888
Q ss_pred cCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 044815 236 MGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKA 315 (675)
Q Consensus 236 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 315 (675)
.|++++|...|......+.. +......++..... ..+........+.. +++...+..+.. |....+.+.+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~-------~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK-------KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH-------HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcc
Confidence 88888888877766544221 11111112111111 11222222222221 112222222222 2211111111
Q ss_pred HHHHHHHHhcCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 316 FRLFLKLVRSDNYKPNV-HTYTAMISG---YCKEEKMNRAEMLLERMKEQG-LLP-NTNTYTSLIYGHCKVGNFERAYDL 389 (675)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~ 389 (675)
..-+....+ ..++. ..+..+... ....+++++|...|++..+.+ ..| +...+..+...+...|++++|...
T Consensus 277 ~~~~~~~~~---~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 277 PAGLEDSNE---LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred hhhhhcccc---cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111111110 01110 001111100 011244555555555555432 112 223344444444555555555555
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044815 390 MDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLN 469 (675)
Q Consensus 390 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 469 (675)
+++..+.. +.+...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|+..|++.++.. +
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 55554432 1223344444555555555555555555544432 2233444444444444555555555554444432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
.+...+..+...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|+..|++..+
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 233344444444444444444444444444332 12233444444444444444444444444443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.8e-20 Score=190.95 Aligned_cols=296 Identities=15% Similarity=0.128 Sum_probs=162.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN---IYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~ 420 (675)
..|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34444444444444444311 1233444444444444455555444444443321111 1234444555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 421 AYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD----IHAYTTLIAAFCRQKKMKESEKFFQ 496 (675)
Q Consensus 421 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 496 (675)
|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 23344455555555555555555555555554332211 1123445556666677777777777
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 497 EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
++.+... .+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+. .|+
T Consensus 205 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 281 (389)
T PRK11788 205 KALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPG 281 (389)
T ss_pred HHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 6665432 2345566666777777777777777777765321111345666677777777777777777777663 455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHc---cCCHHHHHHHHHHHhcCCCCCCH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCS---EKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
...+..++..+.+.|++++|..+++++.+ .|+...++.++..++. .|+.++|+..++++++.++.|++
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 55556667777777777777777766444 3565666666665553 45777788777777765544443
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=9e-20 Score=188.17 Aligned_cols=296 Identities=15% Similarity=0.168 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKP--NVHTYTAMISGYCKEEKMNRAE 352 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~ 352 (675)
|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.++......+ ....+..++..|.+.|++++|.
T Consensus 49 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 566666666666665532 2444566666666666666666666666554221111 1234555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 353 MLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN----IYAYNAIIDGLCKKGRVQEAYELLKKA 428 (675)
Q Consensus 353 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 428 (675)
.+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++
T Consensus 128 ~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 666666553 223455566666666666666666666666655432211 112344555556666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044815 429 FQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508 (675)
Q Consensus 429 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (675)
.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+.. |+..
T Consensus 207 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~ 283 (389)
T PRK11788 207 LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGAD 283 (389)
T ss_pred HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCch
Confidence 5542 223445555556666666666666666666554222123445555666666666666666666655542 4444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK---QSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
.+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|+++++.|++
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4455566666666666666666665552 4555555555554443 33556666666666655555444
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.1e-18 Score=188.77 Aligned_cols=356 Identities=12% Similarity=0.046 Sum_probs=213.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 261 LTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMIS 340 (675)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 340 (675)
...++..+.+. |++++|..+++........ +...+..++......|++++|.+.++++++.. +.+...+..+..
T Consensus 45 ~~~~~~~~~~~---g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIACLRK---DETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHHhc---CCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 34444444444 6777777777776665433 34444455556666777777777777776543 334455666667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 420 (675)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+.+.|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHH
Confidence 7777777777777777776641 2235566666777777777777777777665543 2223333232 23566777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 044815 421 AYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKE----SEKFFQ 496 (675)
Q Consensus 421 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~ 496 (675)
|...++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 77777776655433344444445566667777777777777766653 3345666666777777777664 666777
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 497 EAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP 575 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 575 (675)
++.+... .+...+..+...+.+.|++++|+..+++..+. .|+ ...+..+..++.+.|++++|...++++.+. .|
T Consensus 275 ~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 275 HALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 6666532 24556666677777777777777777776663 343 445556666677777777777777776663 34
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhC-CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 576 CEVT-RVTLAYEYCKQGDSATAMIILESLDKK-LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 576 ~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
+... +..++.++...|+.++|...|++..+. |+.. ...+++|...+.++++.-..|
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 4322 233455666677777777777665442 2211 234456666666665554443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.6e-18 Score=189.90 Aligned_cols=164 Identities=11% Similarity=-0.008 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 222 DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
+.....-.+......|+.++|++++.+..... ..+...+..+...+... |++++|..++++..... +.+...+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~---g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL---KQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 44444445555566666666666666665421 12333455555555554 56666666666655542 123444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 381 (675)
++..+...|++++|+..++++++.. +.+.. +..+...+...|+.++|+..++++.+.... +...+..+...+...+
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 6666666666666666666665542 23333 555566666666666666666666654222 3444444555555566
Q ss_pred CHHHHHHHHHHHh
Q 044815 382 NFERAYDLMDLMG 394 (675)
Q Consensus 382 ~~~~A~~~~~~m~ 394 (675)
..++|++.++...
T Consensus 165 ~~e~Al~~l~~~~ 177 (765)
T PRK10049 165 LSAPALGAIDDAN 177 (765)
T ss_pred ChHHHHHHHHhCC
Confidence 6666666665444
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1e-18 Score=188.95 Aligned_cols=335 Identities=12% Similarity=0.052 Sum_probs=274.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
......++..+.+.|+.++|..++...+... +-+...+..++.+....|++++|...++++.+... .+...+..+..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~ 118 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVAS 118 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 3345567788899999999999999987754 34455666777777889999999999999998532 25678888899
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHH
Confidence 9999999999999999999864 4567788899999999999999999999887764433 3333333 34788999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS----AVKYFQ 531 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~ 531 (675)
|...++.+.+....++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 999999988765344455566667888999999999999999998753 467788889999999999986 899999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC
Q 044815 532 RMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KLW 608 (675)
Q Consensus 532 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 608 (675)
+..+. .|+ ...+..+...+...|++++|...++++++ ..|+. .....++.+|.+.|++++|...++++.. .|+
T Consensus 275 ~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 275 HALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99884 454 67888999999999999999999999998 45554 5567789999999999999999999775 344
Q ss_pred h-hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 609 I-RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 609 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
. ..+..++.++...|+.++|+..|+++++..|+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3 33455677899999999999999999999886
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.3e-16 Score=172.62 Aligned_cols=434 Identities=12% Similarity=0.049 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHH-H
Q 044815 188 TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADA--SSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTL-L 264 (675)
Q Consensus 188 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 264 (675)
+.+-..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|...+++... |+...+.. +
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~ll 106 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLA 106 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHH
Confidence 3333333445668899999999998888763 442 233 777778888999999988888872 22222222 2
Q ss_pred --HHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 265 --ITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGY 342 (675)
Q Consensus 265 --l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 342 (675)
...+... |++++|+++++++.+.... +...+..++..+...++.++|++.+.++.+. .|+...+..++..+
T Consensus 107 alA~ly~~~---gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~ 179 (822)
T PRK14574 107 SAARAYRNE---KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHH
Confidence 3344444 7888999999988887543 4666777788888888888888888887654 35555564444444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH----HHHHHh----
Q 044815 343 CKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAI----IDGLCK---- 414 (675)
Q Consensus 343 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----i~~~~~---- 414 (675)
...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.++-... + +......+ +.-..+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHHHHHHHHHHhhccc
Confidence 44666666888888888763 225667777888888888888888776653322 1 11111111 000111
Q ss_pred -----cCC---HHHHHHHHHHHHhCC-CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 415 -----KGR---VQEAYELLKKAFQRE-LQAD-KITY----TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIA 480 (675)
Q Consensus 415 -----~g~---~~~A~~~~~~~~~~~-~~~~-~~~~----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 480 (675)
.++ .+.|+.-++.+...- ..|. ...| .-.+-++...++.+++++.++.+...+.+....+-..+.+
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 111 222333333333211 1111 1111 1223344455555555555555555443333344455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CC--CH
Q 044815 481 AFCRQKKMKESEKFFQEAITAGL-----FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC-----------AP--DN 542 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p--~~ 542 (675)
+|...+++++|..++.++..... .++......|..+|...+++++|..+++++.+... .| |-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 55555555555555555543221 11222234455555555555555555555544100 01 11
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 543 -ITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 543 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
..+..++..+...|+..+|++.++++.. ..| |......++..+...|...+|.+.++.... +.+..+....+..
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 1222233344445555555555555544 222 223334444555555555555555544322 2233334444444
Q ss_pred HHccCCHHHHHHHHHHHhcCCCC
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+...|++++|..+.+++++..|+
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCC
Confidence 44455555555555555444443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=4.5e-17 Score=180.10 Aligned_cols=408 Identities=10% Similarity=0.042 Sum_probs=268.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044815 158 CMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMG 237 (675)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 237 (675)
..+....-.|+.++|++++.+..... +.....+..+...+.+.|++++|.++|++..+.. +.+...+..++.++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34555667788888888888887633 5566678889999999999999999999988763 446777788888999999
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 044815 238 RVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFR 317 (675)
Q Consensus 238 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 317 (675)
++++|...++++.+... .+.. +..+...+... |+.++|+..++++.+.... +...+..+...+...|..++|++
T Consensus 98 ~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~---g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 98 QYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRA---GRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHC---CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999988632 2344 66666666665 7899999999999887433 55666778888888899999998
Q ss_pred HHHHHHhcCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHH
Q 044815 318 LFLKLVRSDNYKPNV------HTYTAMISGYC-----KEEKM---NRAEMLLERMKEQ-GLLPNTN-TY----TSLIYGH 377 (675)
Q Consensus 318 ~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~ 377 (675)
.+++... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+..+
T Consensus 172 ~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 8876543 2321 01111222221 12233 6677777777753 2222221 11 1113344
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCT-PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA---DKITYTILLSEHLKQAET 453 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 453 (675)
...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++.+.|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 5668888888888888776522 221 22235667888888888888888877643221 123455566677788888
Q ss_pred HHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 044815 454 KQALGLFCRMVKAGL-----------NPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR 519 (675)
Q Consensus 454 ~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 519 (675)
++|...++.+.+... .|+ ...+..+...+...|++++|.++++++....+ .+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 888888888776521 122 12344556666677777777777777766532 345666677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044815 520 DGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTL 583 (675)
Q Consensus 520 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 583 (675)
.|++++|++.+++..+. .|+ ...+...+..+...|++++|+.+++++++ ..|+......+
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 77777777777777663 354 44555555566677777777777777776 44555444333
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.7e-15 Score=164.07 Aligned_cols=441 Identities=11% Similarity=0.065 Sum_probs=318.7
Q ss_pred hhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 044815 149 FERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLIT-STLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK 227 (675)
Q Consensus 149 ~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 227 (675)
...+...|+..| ..++.|+++.|+..|++..+.. |.+. .++ .++..+...|+.++|+..+++.... .........
T Consensus 31 p~~~~~~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLI-IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLA 106 (822)
T ss_pred ccchhHHHHHHH-HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHH
Confidence 334444555444 4689999999999999999875 3332 344 8888889999999999999998732 122333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 044815 228 LMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLC 307 (675)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (675)
.+...+...|++++|.++|+++.+.... +...+..++..+... ++.++|++.++++... .|+...+..++..+.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~---~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~ 180 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADA---GRGGVVLKQATELAER--DPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence 4466888899999999999999987543 455555666666665 7999999999999876 455555655544554
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhc-----
Q 044815 308 KKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTY--TSLIYGHCKV----- 380 (675)
Q Consensus 308 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~----- 380 (675)
..++..+|++.++++++.. +.+...+..++..+.+.|-...|.++..+-... +.+...-+ ...+.-..+.
T Consensus 181 ~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred hcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccccc
Confidence 5677767999999998864 446777788889999999999998777663321 22222111 0111111211
Q ss_pred ----CC---HHHHHHHHHHHhhc-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 381 ----GN---FERAYDLMDLMGKE-GCTPN-IYAY----NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 381 ----g~---~~~A~~~~~~m~~~-g~~~~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.+ .+.|+.-++.+... +-.|. ...| .-.+-++...|++.++++.++.+...+.+....+-..+..+|
T Consensus 258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 12 34455555555542 21232 2222 234567788999999999999999888666667888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC--H-h
Q 044815 448 LKQAETKQALGLFCRMVKAG-----LNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-----------FPT--K-E 508 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~--~-~ 508 (675)
...+++++|+.+++.+.... ..++......|.-++...+++++|..+++++.+... .|+ - .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 99999999999999997653 123444467888999999999999999999987321 122 1 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEY 587 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 587 (675)
.+..++..+...|+..+|.+.++++.... +-|......+...+...|.+.+|++.++.+.. +.|+. .+....+.++
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHH
Confidence 34456777889999999999999998753 44678889999999999999999999987776 45654 4556788899
Q ss_pred HHcCCHHHHHHHHHHHhh
Q 044815 588 CKQGDSATAMIILESLDK 605 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~ 605 (675)
...|++++|..+.+.+..
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 999999999999988765
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.3e-14 Score=136.46 Aligned_cols=315 Identities=15% Similarity=0.221 Sum_probs=233.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHHhhCC-------------------CC
Q 044815 163 FAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIAC--ELGLVEYA-EEVFDEMCARG-------------------VC 220 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~-------------------~~ 220 (675)
....|..+++.-+|+.|...|++.+...-..|++..+ ...++--| ++.|-.|...| .+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 3456888888889999999988888776666665432 21111111 12222222221 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 044815 221 ADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHT 300 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (675)
....++..||.++|+--..+.|.++|++-.....+.+..+||.+|.+-.- ....+++.+|....+.||..|+|
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-------~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-------SVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-------hccHHHHHHHHHhhcCCchHhHH
Confidence 46788999999999999999999999999888888899999999987543 33478999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc----CC---CC-CHH
Q 044815 301 VLIDGLCKKGWTEKAFRLFLKL---VRSDNYKPNVHTYTAMISGYCKEEKMNR-AEMLLERMKEQ----GL---LP-NTN 368 (675)
Q Consensus 301 ~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~----g~---~p-~~~ 368 (675)
+++.+..+.|+++.|.+.+.++ ++.-|+.|...+|..+|..+++.++..+ |..++.++... .+ .| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999988876555443 2557899999999999999999888755 44445554432 22 23 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 369 TYTSLIYGHCKVGNFERAYDLMDLMGKEG----CTPN---IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYT 441 (675)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 441 (675)
-|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+....+.-+..|+.|+-+-..|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 66778888889999999988876654321 2233 2346678888899999999999999998877888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 442 ILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 442 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
.++++....++++-.-++|.+++..|..-.......++..+|+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 9999999999999999999999887755444444444444443
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=4.9e-16 Score=146.80 Aligned_cols=470 Identities=12% Similarity=0.080 Sum_probs=286.5
Q ss_pred CChHHHHHHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHH-------------
Q 044815 95 LTHEQAITVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVS------------- 161 (675)
Q Consensus 95 l~~~~~~~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~------------- 161 (675)
||+.++..+......+....+||..+.-+.+..-|+.....-..++.++.+.++|..|.+.|+..+.
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 5666555555545445556788888888888888887777777788888888889888888775332
Q ss_pred ------HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC------------H
Q 044815 162 ------SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD------------A 223 (675)
Q Consensus 162 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~ 223 (675)
.|.+.|++++|+..|+...+.. |+..+-..|+-++...|+-++..+.|.+|+..-..+| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 3556666666666666655543 5554444444455556666666666666654321121 1
Q ss_pred HHHHHHHH-----HHHHcCC--HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCh
Q 044815 224 SSYKLMVV-----AYCRMGR--VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNV 296 (675)
Q Consensus 224 ~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (675)
...+-.|. -+-+.++ .++++-.-.+++.--+.|+.. --.+-+++.++.-....+..+.
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---------------~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---------------AGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---------------cccHHHHHHHHHhhhhhhhhhh
Confidence 11111111 0000000 001111111111110111100 0011111111111110000011
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK-EEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
--.-..-|.+.|+++.|++++.-+.++.+-..+...-|.-+-.|.+ -.++..|..+-+..+... .-|....+.-..
T Consensus 422 --ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn 498 (840)
T KOG2003|consen 422 --EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGN 498 (840)
T ss_pred --hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCc
Confidence 0112335788999999999986665443322222222222222222 345677777666655431 123333333333
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
.-...|++++|.+.|++.....-.-....| .+.-.+-..|++++|++.|-++... ...+..+...+.+.|....+..+
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 344678999999999998876322222223 2344567789999999999887643 34567778888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|++++.+.... ++.|+.....|...|-+.|+-.+|.+.+-+--+. ++-+..+...|..-|....-+++|+.+|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99998777654 5668889999999999999999999887665543 456888889999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 044815 536 IGCAPDNITYGALISGL-CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG 591 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 591 (675)
+.|+..-|..++..| .+.|++++|..+|+...++ ++.|.....-|+......|
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 689999998877654 6789999999999998764 4445555555666555554
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=3.4e-13 Score=133.62 Aligned_cols=487 Identities=11% Similarity=0.059 Sum_probs=380.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
+-......++|.-++.+..+. ++.+...|. +|++..-++.|.++++...+. ++-+...|-+....=-.+|+.+.
T Consensus 385 aAVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHH
Confidence 444556667788888877765 344444444 566778899999999998875 57788889887777778899988
Q ss_pred HHHHHHH----HhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHH
Q 044815 242 ADRWLSA----MLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKP--NVYTHTVLIDGLCKKGWTEKA 315 (675)
Q Consensus 242 A~~~~~~----m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 315 (675)
...+.++ +...|+..+...|-.=...|-.. |..-.+..+....+.-|++. -..||+.-...|.+.+.++-|
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a---gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDA---GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc---CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 8888765 44568888888887777777776 67888888888888877653 345788888899999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044815 316 FRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGK 395 (675)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (675)
..+|...++.. +.+...|......--..|..++...+|++.... ++-....|......+-..|++..|..++....+
T Consensus 536 rAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 536 RAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99998887754 455667777776666789999999999999886 444566677777778889999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044815 396 EGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAY 475 (675)
Q Consensus 396 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 475 (675)
.. +.+...|-.-+........++.|..+|.+... ..++...|..-+...--.++.++|++++++.++. ++.-...|
T Consensus 613 ~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~ 688 (913)
T KOG0495|consen 613 AN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLW 688 (913)
T ss_pred hC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHH
Confidence 75 44677888888888999999999999999876 4677778877777778889999999999998886 34446788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 555 (675)
..+.+.+-+.++++.|...|..-.+. ++-....|-.|...--+.|..-.|..++++..-.+ +-|...|...|+.-.+.
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRA 766 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHc
Confidence 89999999999999999998766553 33345677778777788899999999999987754 34677899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 556 SKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
|+.++|..+..++++. -|+. ..+..-+...-+-++--.....+.+.. .++....++...+....+++.|++.|.+
T Consensus 767 gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred CCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888873 2333 344445555555555445555554443 3555677788888889999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 635 LLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 635 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+++.+++ +..+|.-+...+.+.|.-++-.++++++.
T Consensus 843 avk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 843 AVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999998 78888888888899998888888887764
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=5e-13 Score=137.80 Aligned_cols=371 Identities=14% Similarity=0.121 Sum_probs=202.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
++..|..+.++|...|++.+|+.+|..+....+. -+...|-.+..+|...|.+++|...|++.+... +-+...-..|.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~La 490 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLA 490 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHH
Confidence 4556777777888888888888888877654433 346678888888888888888888888887642 22455566677
Q ss_pred HHHHhcCCHHHHHHHHHHHhh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----C--------
Q 044815 375 YGHCKVGNFERAYDLMDLMGK--------EGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRE-----L-------- 433 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~--------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~-------- 433 (675)
..+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-...-..|+... +
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r 570 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKR 570 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 777888888888888877542 2234444444455566666776665444333322110 0
Q ss_pred ---------CCCHH-------------------------------------------HHHHHHHHHHhcCCHHHHHHHHH
Q 044815 434 ---------QADKI-------------------------------------------TYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 434 ---------~~~~~-------------------------------------------~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
..... .+.-++..+++.+++++|+.+..
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 571 RRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 00001 11223334444455555555544
Q ss_pred HHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 462 RMVKAGL-NPDIH----AYTTLIAAFCRQKKMKESEKFFQEAITA-GLF---PTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 462 ~m~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
.+.+... .-+.. .-...+.+.+..+++..|...++.|... +.. --...||...+.+.+.++-.--.+++..
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443311 00111 1122233334445555555555544432 000 1122333333333333322222222222
Q ss_pred HHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc--C--------CHHHHHHH
Q 044815 533 MNQIGCAPD--NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ--G--------DSATAMII 599 (675)
Q Consensus 533 m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--g--------~~~~A~~~ 599 (675)
... ..|+ ...+....+.+...+.+..|++.+-++.. ..|+ +.+-..++.++... + ..-.+..+
T Consensus 731 ~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 731 LLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred Hhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 1111 11112222233455678888888777776 4455 33333344333321 1 12334455
Q ss_pred HHHHhhC--C--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCchhHHH
Q 044815 600 LESLDKK--L--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-----------DRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 600 ~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
+.+..+. . ...++..++++|-..|-..-|..+|+++++..|.+ -...-.+|.-+|..+|+.+.|.
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lAr 886 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLAR 886 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHH
Confidence 5444331 1 34566779999999999999999999999885421 1223456777899999999999
Q ss_pred HHHHHHH
Q 044815 665 DLSQRIA 671 (675)
Q Consensus 665 ~~~~~~~ 671 (675)
+++++-+
T Consensus 887 qil~kyl 893 (895)
T KOG2076|consen 887 QILEKYL 893 (895)
T ss_pred HHHHhhc
Confidence 9998753
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=3.4e-13 Score=138.99 Aligned_cols=329 Identities=14% Similarity=0.165 Sum_probs=207.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
.|++ |++++|..++.+.++.. +.+...|..|..+|-..|+.+++...+-...... +.|..-|..+.....+.|++++
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3444 88888888888887775 5667778888888888888888877766665543 4466778877777788888888
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHH
Q 044815 242 ADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVY----THTVLIDGLCKKGWTEKAFR 317 (675)
Q Consensus 242 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~ 317 (675)
|.-.|.+.++... ++...+-.-...|.+. |+...|..-|.++.....+.|.. .-...+..+...++-+.|.+
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~---G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKT---GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHh---ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888877642 2333333344445554 67778887777777653322222 22233455666676677777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------------------CHHHH
Q 044815 318 LFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP---------------------------NTNTY 370 (675)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---------------------------~~~~~ 370 (675)
.++......+-.-+...++.++..+.+...++.|......+......+ +...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 777776644445556667777777777777777777776666522222 22221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGC--TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHL 448 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 448 (675)
-++-++......+....+.....+..+ .-+...|.-+..+|...|++.+|+.+|..+.....-.+...|-.+..+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122233334444444444444444442 23355666677777777777777777777776544455667777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
..|..++|.+.++..+... +.+...-..|...+-+.|+.++|.+.+..+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 7777777777777776653 3345555566666677777777777776643
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=6.5e-15 Score=139.29 Aligned_cols=472 Identities=13% Similarity=0.082 Sum_probs=320.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK-LMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
+-.++..|..-|.....+.+|+..|+-+.+...-|+.-... .+...+.+..++.+|+.+|+..+..-...+..+-..++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 33455556667777888999999999988766666654433 23457788889999999998877653333333333232
Q ss_pred ----HHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CC
Q 044815 266 ----TAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNY-----------KP 330 (675)
Q Consensus 266 ----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~ 330 (675)
..+.+. |.++.|+.-|+...+. .||..+-..|+-++...|+-++..+.|.+++...+. .|
T Consensus 280 ~nigvtfiq~---gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 280 NNIGVTFIQA---GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred hhcCeeEEec---ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 233443 8899999999987765 578777666777777789999999999998764332 23
Q ss_pred CHHHHHHHHH-----HHHhcC--ChHHHHHHHHHHHHcCCCCCHHH---H----------H--------HHHHHHHhcCC
Q 044815 331 NVHTYTAMIS-----GYCKEE--KMNRAEMLLERMKEQGLLPNTNT---Y----------T--------SLIYGHCKVGN 382 (675)
Q Consensus 331 ~~~~~~~li~-----~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~ 382 (675)
+....+.-|. ..-+.+ +-++++-.--++..--+.||-.. | . .-..-+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 3333332221 111111 12222222222222223333210 0 0 11224678999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 383 FERAYDLMDLMGKEGCTPNIYAYNAIIDGLC-K-KGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLF 460 (675)
Q Consensus 383 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 460 (675)
++.|.++++.+.+..-..-...-+.|...+. + ..++..|.++-+..+..+ .-+......-.+....+|++++|.+.+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999999999887643333333333333322 2 446778877776665432 233333333344455689999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044815 461 CRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP 540 (675)
Q Consensus 461 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 540 (675)
++....+..-....|| +.-.+-..|++++|...|-++... +..+..+.-.+...|-...+..+|++++.+.... ++.
T Consensus 514 keal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPN 590 (840)
T ss_pred HHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCC
Confidence 9998764332233333 334566789999999999877643 2346777888888999999999999999887763 455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKL 619 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~ 619 (675)
|+.....|...|-+.|+-.+|.+.+-.--+. ++-+..+...|+..|....-+++|+.+|++..- .|+..-|..++..|
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 7889999999999999999999887665441 334567888899899999999999999999654 68888898877665
Q ss_pred -HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 620 -CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 620 -~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
.+.|+++.|..+|+..-.+-|. |..++..|++.+...|- .+|.++..++
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 5699999999999999888888 99999999999998885 3444444433
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=3.7e-12 Score=126.43 Aligned_cols=471 Identities=13% Similarity=0.035 Sum_probs=383.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHH
Q 044815 160 VSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEM----CARGVCADASSYKLMVVAYCR 235 (675)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~ 235 (675)
.-+|++..-++.|..++...++. +|.+...|..-...=-..|+.+...++.++- ...|+..+...|-.=...+-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34788889999999999999876 7889999988877777899999998888764 347888899999888888989
Q ss_pred cCCHHHHHHHHHHHhHCCCCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 044815 236 MGRVTEADRWLSAMLDRGAIL--DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTE 313 (675)
Q Consensus 236 ~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 313 (675)
.|.+-.+..+....+..|+.- -..||..--..|.+. +.++-|..+|....+- ++.+...|......--..|..+
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~---~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR---PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc---chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHH
Confidence 999999999999988887753 246777777888886 7899999999998875 3335667777776666789999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (675)
+-..+|++.+.. ++.....|-.....+-..|+...|..++.+..+.... +...|..-+..-....++++|..+|.+.
T Consensus 568 sl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 568 SLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999998764 4556666777777788899999999999999886443 7788999999999999999999999998
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 044815 394 GKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH 473 (675)
Q Consensus 394 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 473 (675)
... .|+..+|..-+...--.+..++|.+++++.++. ++.-...|-.+.+.+.+.++.+.|.+.|..-.+. ++..+.
T Consensus 645 r~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 645 RSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred hcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 875 578888877777777789999999999998875 3333457888899999999999999988776665 455677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
.|..|...--+.|.+-.|..++++..-.++ .+...|-..|..-.+.|+.+.|..+..+..+. ++.+...|..-|....
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 888888888889999999999999988775 57889999999999999999999999988774 6666778888887776
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHH
Q 044815 554 KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALF 631 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (675)
+.++--.....+++. .-|+.....++..+....++++|.+.|.+..+. +.-.+|..+...+.+.|.-+.-.++
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 766644444333332 235667788889999999999999999998763 3456888888899999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHH
Q 044815 632 FHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 632 ~~~~~~~~~~p~~~~~~~l 650 (675)
+.+.....|. ....|.++
T Consensus 874 ~~~c~~~EP~-hG~~W~av 891 (913)
T KOG0495|consen 874 LKKCETAEPT-HGELWQAV 891 (913)
T ss_pred HHHHhccCCC-CCcHHHHH
Confidence 9999888887 55555544
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.8e-13 Score=128.88 Aligned_cols=427 Identities=16% Similarity=0.207 Sum_probs=302.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHH-HHHHHHHHHhHCCCCCCHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA--YCRMGRVT-EADRWLSAMLDRGAILDNATLTL 263 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~-~A~~~~~~m~~~g~~~~~~~~~~ 263 (675)
.+.+=+.|+.. ..+|.+.++.-+|+.|...|++.+...--.|... |....++- .-++.|-.|...|-. ...+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 34556666654 4688999999999999999988888877777763 33333333 234566666665533 12221
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 264 LITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYC 343 (675)
Q Consensus 264 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 343 (675)
+. |.+.+ ++-+.. +-+..+|..+|.++|+--..+.|.+++++.-. ...+.+..+||.+|.+-.
T Consensus 191 ------K~---G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S 253 (625)
T KOG4422|consen 191 ------KS---GAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASS 253 (625)
T ss_pred ------cc---ccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHH
Confidence 11 34333 333322 23678999999999999999999999988754 335788889999987644
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFER----AYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQ 419 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 419 (675)
- ..-.+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..
T Consensus 254 ~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 254 Y----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred h----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 2 2237899999999999999999999999999998765 5678899999999999999999999999988865
Q ss_pred H-HHHHHHHHHh----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHH
Q 044815 420 E-AYELLKKAFQ----RELQ----ADKITYTILLSEHLKQAETKQALGLFCRMVKAG----LNPD---IHAYTTLIAAFC 483 (675)
Q Consensus 420 ~-A~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~---~~~~~~li~~~~ 483 (675)
+ |..++.++.. +.++ .|...+...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 4 4445555443 2222 245567778888888899888888876554321 2333 234667888889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH----
Q 044815 484 RQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS-KL---- 558 (675)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~---- 558 (675)
+....+.-...|+.|+-.-..|+..+...++++..-.|+++-.-++|..++..|...+......++..+++.. .+
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 9999999999999999877778999999999999999999999999999998876555555555555555443 11
Q ss_pred ----H-----HHHHHHH-------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----hhhHH---HH
Q 044815 559 ----D-----EACQFYE-------SMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLW----IRTVN---TL 615 (675)
Q Consensus 559 ----~-----~A~~~~~-------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~---~l 615 (675)
. -|..+++ +|....+. ....+.++..+.+.|+.++|.+++.-+.++.+ ....| -+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 0 0111111 22222333 34566677788899999999999998855432 22344 34
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
++.-...+....|+.+++-|...+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 4555567788888888888765544
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.7e-12 Score=120.50 Aligned_cols=454 Identities=14% Similarity=0.101 Sum_probs=275.9
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHH
Q 044815 199 CELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK 278 (675)
Q Consensus 199 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~ 278 (675)
-.++++..|..+|++..... ..+...|--.+.+=.++..+..|..++++.+..=...|..-| ..+..--.. |++.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~L---gNi~ 158 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEML---GNIA 158 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHh---cccH
Confidence 34555666777777766543 345556666666666677777777777776654222222222 222221222 6777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 279 QAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM 358 (675)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 358 (675)
.|.++|+.-.+ +.|+...|.+.|+.-.+-..++.|..++++.+- +.|++.+|--....-.+.|....|..+|+..
T Consensus 159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77777777665 467777777777777777777777777777654 3477777777776667777777777777776
Q ss_pred HHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHH--------HHH
Q 044815 359 KEQ-GL-LPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN--IYAYNAIIDGLCKKGRVQEAYE--------LLK 426 (675)
Q Consensus 359 ~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~--------~~~ 426 (675)
.+. |- .-+...++++...-.+...++.|.-+|+-.... ++.+ ...|..+...--+-|+.....+ -++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 653 10 011223334443334556677777777766654 2222 3444444444444454332222 233
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHH
Q 044815 427 KAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH-------AYTTLIAAF---CRQKKMKESEKFFQ 496 (675)
Q Consensus 427 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~---~~~g~~~~A~~~~~ 496 (675)
++.+.+ +.|-.+|--.++.-...|+.+...++|++.+.+ ++|-.. .|.-+--++ ....+++.+.++|+
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344332 456667777777777778888888888887765 344211 111111111 24677888888888
Q ss_pred HHHHCCCCCCHhHHHHH----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 497 EAITAGLFPTKETYTSM----ICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
..++. ++....||..+ ..-..++.+...|.+++...+ |.-|...+|...|..=.+.+++|.+..+|++.++
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-- 465 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-- 465 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 87773 22233344333 333346777888888887765 4567777888888777788888888888888888
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 573 ISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKKLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 573 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
..|. ..++...+..=...|+.+.|..+|+-+...|. ...|.+.|+.-...|.++.|..+|+++++...- ...|
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvW 543 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVW 543 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHH
Confidence 3342 35556566666677888888888887766552 345677777777788888888888888776543 3355
Q ss_pred HHHHHHHH-----hcC-----------chhHHHHHHHHHHh
Q 044815 648 AALKNACY-----ESN-----------KYALFSDLSQRIAE 672 (675)
Q Consensus 648 ~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 672 (675)
.+.+.--. +.| +...|+.+++++..
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 55544332 334 55667777776643
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=8.7e-17 Score=156.88 Aligned_cols=261 Identities=18% Similarity=0.173 Sum_probs=114.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRE-LQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
.+...+.+.|++++|++++++..... .+.|...|..+.......++.+.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778888899999999997655443 3445566666777777889999999999999876533 56667777777 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG-CAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876653 567778888899999999999999999977532 345677888899999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 565 YESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 565 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+++.++ ..|+ ......+++.+...|+.+++..+++...+. .++..|..++.++...|+.++|+.+|+++.+.+|.
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999999 6676 455678999999999999988888887653 46677899999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHhcc
Q 044815 642 VDRVSLAALKNACYESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 642 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 674 (675)
|+.++..++.++.+.|+.++|.++..++.+.+
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp --HHHHHHHHHHHT-------------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988754
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.4e-11 Score=115.30 Aligned_cols=456 Identities=11% Similarity=0.080 Sum_probs=330.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRW 245 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (675)
.+++..|..+|+..+... ..+...|...+.+=.+...+..|..++++....- +.-...|.-.+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHH
Confidence 455667777788777665 3456677778888888999999999999988752 22334455555555667999999999
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 246 LSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 246 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
|++-.+ ..|+...|...|..-.+. +.++.|..+++..+-. .|++.+|-.....-.+.|.+..|..+|+..++.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRy---keieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRY---KEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHh---hHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999876 579999999999888776 7899999999998764 589999999999889999999999999988775
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHh
Q 044815 326 DNYK-PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN--TNTYTSLIYGHCKVGNFERAYDL--------MDLMG 394 (675)
Q Consensus 326 ~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~ 394 (675)
-|-. .+...+.+....-.+...++.|.-+|+-.++. ++.+ ...|..+...--+-|+.....+. |+.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 4321 11223344444334567788888888888775 3334 34455555444445554333322 44455
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHH--------HHHHhcCCHHHHHHHHHHHH
Q 044815 395 KEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI--TYTILL--------SEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 395 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li--------~~~~~~~~~~~A~~~~~~m~ 464 (675)
+.+ +.|-.+|--.++.-...|+.+...++|++++.. ++|-.. .|...| -.-....+++.+.++++..+
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 544 567778888888888889999999999999876 344221 122222 12234688999999999998
Q ss_pred HcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044815 465 KAGLNPDIHAYTTLIAAF----CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP 540 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 540 (675)
+. ++....||.-+--+| .++.++..|.+++..++. ..|-..+|...|..-.+.+++|.+.+++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 84 455556665544444 578899999999998875 46889999999999999999999999999999864 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CChhhHHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGI-SPCEVTRVTLAYEYCKQGDSATAMIILESLDKK-LWIRTVNTLIRK 618 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~ 618 (675)
|-.+|......=...|+.+.|..+|+-++.... ..-...+.+.+.-=...|.++.|..+++++... +...+|-+++..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 567888888877889999999999999987532 111244455666666899999999999998764 455677666654
Q ss_pred HH-----ccC-----------CHHHHHHHHHHHhc
Q 044815 619 LC-----SEK-----------RVGMAALFFHKLLG 637 (675)
Q Consensus 619 ~~-----~~g-----------~~~~A~~~~~~~~~ 637 (675)
-. +.| +...|..+|+++..
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 33 344 66788888887754
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.7e-13 Score=130.38 Aligned_cols=480 Identities=12% Similarity=0.058 Sum_probs=217.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 044815 157 QCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRM 236 (675)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 236 (675)
..+++-+....++..|.-+-+++...+ .|+...-.+..++.-.|+++.|..+...-.-. ..|..+......++.+.
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHH
Confidence 334444556677888888878877665 45555666788888889999888887765332 35788888888899999
Q ss_pred CCHHHHHHHHHHHhH--CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 044815 237 GRVTEADRWLSAMLD--RGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEK 314 (675)
Q Consensus 237 g~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 314 (675)
.++++|..++..-.. ..+.-+..+- .... ..+.+. ++. ++......+-.-...|....+.++
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~---~~~l-------~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDA---ANTL-------ELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhh---hcee-------ccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 999999988773200 0010011100 0000 000000 000 000011111112233444445555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 044815 315 AFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGL----LPNTNTYTSLIYGH-CKVGNFERAYDL 389 (675)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~-~~~g~~~~A~~~ 389 (675)
|...|.+.+. .|...|..+...-.. .+-.+.+.++.+..... .-+......+.... ++..+ +.....
T Consensus 160 ar~~Y~~Al~-----~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r 231 (611)
T KOG1173|consen 160 ARDKYKEALL-----ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTR 231 (611)
T ss_pred HHHHHHHHHh-----cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-cccccc
Confidence 5555554432 333333332221111 01111111111111100 00111111111111 00000 000000
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 044815 390 MDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLN 469 (675)
Q Consensus 390 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 469 (675)
-.+..-.+..-+........+-+...+++.+..++++...+.. ++....+-.-|..+.+.|+..+-..+=.++++. .+
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 0000011122334444444444555555555555555555442 233333333344555555555544444455443 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 549 (675)
....+|-++.--|.-.|+..+|+++|.+....+. .=...|-.+...|.-.|..|+|+..+...-+. ++-...-+-.+.
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 3344555555555555555555555555544321 11234555555555555555555555444331 000111122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------CCChhhHHHHHHHH
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK---------KLWIRTVNTLIRKL 619 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~ 619 (675)
--|.+.++++-|.++|.++.. +.|+ +.....++-.....+.+.+|..+|+.... ..|..+++.|+.+|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 234455555555555555544 4342 23334444444555555555555554331 01344455555555
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.+.+++++|+..+++++...|+ |..++.+++-+|...|+.+.|.+.+.|++
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5555555555555555555555 55555555555555555555555555543
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=1.8e-13 Score=140.62 Aligned_cols=288 Identities=15% Similarity=0.076 Sum_probs=167.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3466666666665554432 32 22233334555556666666666666554322222223333455556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-H---HHHHHHHcCCHHHHHHHHHHH
Q 044815 458 GLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYT-S---MICGYLRDGNISSAVKYFQRM 533 (675)
Q Consensus 458 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~---li~~~~~~g~~~~A~~~~~~m 533 (675)
..++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+.+.. +...+. . ...++...+..+++...+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666653 334555666666666666666666666666665442 222221 1 111112222223233344433
Q ss_pred HHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhh--
Q 044815 534 NQIG---CAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR---VTLAYEYCKQGDSATAMIILESLDK-- 605 (675)
Q Consensus 534 ~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~-- 605 (675)
.+.. .+.+...+..++..+...|+.++|.+++++.++. .||.... ..........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 3321 1126667777777888888888888888888774 3443311 1112223345677777777777554
Q ss_pred CCCh--hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 606 KLWI--RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 606 ~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+.++ ....++++.+.+.|++++|.++|+++......|+...+..++..+.+.|+.++|.+++++.++
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345 556788888888999999999888544444445667777889999999999999998888765
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=5.7e-13 Score=136.05 Aligned_cols=250 Identities=13% Similarity=0.034 Sum_probs=147.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKI--TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKE 490 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 490 (675)
.+.|+++.|.+.+.++.+. .|+.. ........+...|++++|...++++.+.. +-+...+..+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 22221 11122445555555555555555555543 3345555555566666666666
Q ss_pred HHHHHHHHHHCCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 491 SEKFFQEAITAGLFPTK-------ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQ 563 (675)
Q Consensus 491 A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 563 (675)
|.+++..+.+.+..++. ..|..++.......+.+...++|+.+.+. .+.+......+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666555432211 12222333333344455566666665432 23456667777777777888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 564 FYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 564 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
++++..+. .|+.... ++.+....++.+++++.++...+ +.++..+.++++.+.+.|++++|.+.|+++++..|
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P- 359 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP- 359 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 87777763 3443211 23333455777777777777655 23555667778888888888888888888777654
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 642 VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 642 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+..++..++.++.+.|+.++|.+++++.+.
T Consensus 360 -~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 -DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677788888888888888888877754
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.4e-11 Score=116.20 Aligned_cols=288 Identities=17% Similarity=0.143 Sum_probs=163.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHhcCC
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGC--TPNIYAYNAIIDGLCKKGR 417 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~ 417 (675)
.++-.....+++..-.+.....|++-+...-+-...+.....++++|+.+|+++.+... --|..+|..++-.--. +
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--K 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh--h
Confidence 34444445666666666666666654444444444445556667777777777666521 0134455444432211 1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 418 VQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 418 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
..+.++.+-.-.-.+--+.|..++.+-|.-.++.++|+..|++..+.+ +-....|+.+.+-|....+...|.+-++.
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111122111111123344556666666666677777777777776654 33455666667777777777777777777
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 498 AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
+++..+ .|-..|-.|.++|.-.+...-|+-+|++..+ ++| |...|.+|..+|.+.++.++|+..|.+....|-. +
T Consensus 390 Avdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 390 AVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 776543 4566677777777777777777777777666 344 4666777777777777777777777777665432 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CC---hhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDKK------LW---IRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
...+..|+..|-+.++.++|.+.+++-.+. -+ ..+.-.|..-+.+.+++++|-.+..+..
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 355666777777777777777666654331 01 1112224444555666666665554443
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.7e-12 Score=124.63 Aligned_cols=219 Identities=17% Similarity=0.161 Sum_probs=139.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 412 LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKES 491 (675)
Q Consensus 412 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (675)
+.-.|+.-.|...|+..++....++. .|--+...|....+.++....|++..+.+ +-++.+|..-..+..-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34467777778888877775433332 26666677788888888888888877765 44666777777777777888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
..-|++.+.... -+...|--+..+..+.++++++...|++.++. .+.-+..|+.....+...+++++|.+.|+..++
T Consensus 414 ~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 888888877542 24555666666666788888888888887764 333467788888888888888888888888877
Q ss_pred CCCCCH-------HHHH--HHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 572 GISPCE-------VTRV--TLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 572 g~~p~~-------~~~~--~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
+.|+. ..+. .++..-. .+++..|.+++++..+ +.....|.+|+....+.|+.++|+++|++...
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44431 1111 1111111 2555555555555443 12334455555555555555555555555433
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.5e-11 Score=116.09 Aligned_cols=383 Identities=17% Similarity=0.144 Sum_probs=228.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC--
Q 044815 218 GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN-- 295 (675)
Q Consensus 218 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 295 (675)
+...|...+-.....+-+.|..+.|...|......- +..-..|..|...+ .+.+. ....... ...|
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li------t~~e~----~~~l~~~-l~~~~h 226 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI------TDIEI----LSILVVG-LPSDMH 226 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh------chHHH----HHHHHhc-Ccccch
Confidence 334455555555556667777777777777766531 11222333332222 12222 2222211 1111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGL--LPNTNTYTSL 373 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l 373 (675)
...--.+..++-...+.+++.+-.+.... .|++.+...-+....+.....++++|+.+|+++.+... .-|..+|..+
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 11112234455555666777666555533 44444444444445555567788888888888877521 1256677766
Q ss_pred HHHHHhcCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044815 374 IYGHCKVGNFERAYDLMDLM-GKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452 (675)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 452 (675)
+-. +..+-. +..+.+- .+.+ +--+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|....+
T Consensus 306 LYv--~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 306 LYV--KNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHH--HhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcc
Confidence 533 322211 1122111 1111 2234566677777777888888888888887754 3345667777888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
...|++-++..++-+ +.|-..|-.|.++|.-.+...=|.-+|+++.+..+ .|...|.+|..+|.+.++.++|++.|.+
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888887764 55777788888888888888888888888877643 4677888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 533 MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK----GISPCE--VTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
....| ..+...+..+...+-+.++.++|.+.|++.++. |...+. ....-|+.-+.+.+++++|..+......-
T Consensus 458 ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 458 AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 77755 335567777888888888888888888776652 322221 22223555566777777765544433221
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 607 LWIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
.-..++|..+++++..
T Consensus 537 ---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ---------------ETECEEAKALLREIRK 552 (559)
T ss_pred ---------------CchHHHHHHHHHHHHH
Confidence 2234666666666544
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=3.4e-12 Score=130.40 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
++.....+...+...|+.++|.+.+++..+. .|+.... ++.+.+..++.+++++..++..+.. +-|...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4444444555555555555555555555442 1222111 1222223355555555555554421 112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
.|.+.+++++|.+.|+.+.+ ..|+..++..++..+.+.|+.++|.+++++
T Consensus 337 l~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555555 345544444455555555555555444443
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.2e-11 Score=119.01 Aligned_cols=409 Identities=16% Similarity=0.078 Sum_probs=261.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHc
Q 044815 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLI-TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD-ASSYKLMVVAYCRM 236 (675)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 236 (675)
.-.-|.++|++++|++.+.+.+.. .|+ +.-|.....+|...|+++++.+--.+..+. .|+ +..+.--..++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 344578889999999999998886 466 777888899999999999999988888775 343 33344444567777
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHH-cC--CCCChhhHHHHHHH
Q 044815 237 GRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK--------QAFELLEEMVR-KG--WKPNVYTHTVLIDG 305 (675)
Q Consensus 237 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~--------~a~~~~~~~~~-~~--~~~~~~~~~~l~~~ 305 (675)
|++++|+.= +|...++.++... ...- .|....++-.+ .+ .-|......+....
T Consensus 197 g~~~eal~D-------------~tv~ci~~~F~n~---s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 197 GKFDEALFD-------------VTVLCILEGFQNA---SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred ccHHHHHHh-------------hhHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 887777632 2222333333221 0111 12222222222 11 12333222222222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHH---cCCCCC---------HHHHHH
Q 044815 306 LCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK-EEKMNRAEMLLERMKE---QGLLPN---------TNTYTS 372 (675)
Q Consensus 306 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~---~g~~p~---------~~~~~~ 372 (675)
+... +. ..+.. .+.+.|...-..+-..+.. ...+.+|.+.+.+-.. .....+ ..+...
T Consensus 261 F~~~--~~------~~~~~-~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 261 FHAD--PK------PLFDN-KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred cccc--cc------ccccC-CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 2110 00 00000 0000111111111111111 1234444444433211 001111 112222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044815 373 LIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452 (675)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 452 (675)
-...+.-.|+.-.|.+-|+..++.... +...|-.+..+|....+.++....|.+..+.+ +-++.+|..-.+...-.++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence 223344578889999999999987533 33348888889999999999999999998865 4567788888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
+++|..=|++.+... +-+...|..+.-+..+.++++++...|++..++ ++.-+..|+.....+..++++++|.+.|+.
T Consensus 410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 999999999998864 446777878888888999999999999999986 445678999999999999999999999999
Q ss_pred HHHCCCCCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 533 MNQIGCAPD-------NITYG--ALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 533 m~~~~~~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
.++. .|+ ...+. .++ .+.-.+++..|..+++++++ +.|. ...+..|+..-.+.|+.++|+++|++
T Consensus 488 ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 488 AIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8873 344 11111 111 12234899999999999999 5554 46778899999999999999999998
Q ss_pred Hhh
Q 044815 603 LDK 605 (675)
Q Consensus 603 ~~~ 605 (675)
...
T Consensus 563 sa~ 565 (606)
T KOG0547|consen 563 SAQ 565 (606)
T ss_pred HHH
Confidence 543
No 46
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4.2e-11 Score=110.46 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=85.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044815 164 AEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEAD 243 (675)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 243 (675)
....++..|+.+++--...+-.....+-..+..++.+.|++++|...++.+.+.. .++...+-.|.-++.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3445555555555544433322222334444555666666666666666665532 344445555555555556666666
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 244 RWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLV 323 (675)
Q Consensus 244 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 323 (675)
.+-.+..+ ++.....+++..-+. ++-++-..+.+.+.+ ....--+|.......-.+.+|++++.+.+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahkl---ndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKL---NDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHh---CcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444322 222223333333333 344444444443332 12223334444444445666666666665
Q ss_pred hcCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHH
Q 044815 324 RSDNYKPNVHTYTAM-ISGYCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 324 ~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~ 360 (675)
... |+....|.. .-+|.+..-++-+.+++.-.++
T Consensus 179 ~dn---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 179 QDN---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hcC---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 432 444444432 2344455555666666655554
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=6.1e-12 Score=129.27 Aligned_cols=286 Identities=13% Similarity=0.012 Sum_probs=189.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 422 (675)
..|+++.|.+.+.+..+. .|+ ...+-....+....|+++.|.+.+.+..+..-.+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467888888887776654 333 23334445666677888888888877765421122223334567777788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHH
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYT-TLIAAF---CRQKKMKESEKFFQEA 498 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~g~~~~A~~~~~~~ 498 (675)
..++.+.+.. +.+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887764 345566777788888888888888888888877543 332221 111111 2223333333455444
Q ss_pred HHCCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 499 ITAGL---FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT---YGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 499 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
.+... +.+...+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk-- 327 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK-- 327 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--
Confidence 44321 137778888888889999999999999988874 354431 11122223445778888888888887
Q ss_pred CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH--H-hhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 573 ISPCEV---TRVTLAYEYCKQGDSATAMIILES--L-DKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 573 ~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
..|+.. ...++++.+.+.|++++|.+.|+. . ...|+...+..++..+.+.|+.++|.++|++.+.
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345443 456788999999999999999993 3 3467777788899999999999999999988644
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=4.5e-13 Score=133.98 Aligned_cols=286 Identities=17% Similarity=0.146 Sum_probs=219.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 347 KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEG--CTPNIYAYNAIIDGLCKKGRVQEAYEL 424 (675)
Q Consensus 347 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 424 (675)
+..+|+..|.+..+. +.-.......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885543 22233555677888999999999999999987752 12245667766654432 223333
Q ss_pred HH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 044815 425 LK-KAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL 503 (675)
Q Consensus 425 ~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 503 (675)
+. ++++. .+..+.+|-++.+.|.-+++.+.|++.|++.++.+ +-...+|+.+.+-+.....+|.|...|+.++....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 32 33332 35677899999999999999999999999998863 23788999999999999999999999999887422
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 044815 504 FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRV 581 (675)
Q Consensus 504 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 581 (675)
-+...|--+.-.|.++++++.|.-.|++..+. .| +.+....+...+-+.|+.|+|+++++++.. +.| |....+
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 13334455677899999999999999999884 45 456677777888899999999999999988 444 345556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
.-+..+...+++++|+..++++.+ +.+...+..++..|.+.|+.+.|+..|--|.+.+|++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 778888899999999999999877 456777888999999999999999999999999988654
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.7e-13 Score=134.55 Aligned_cols=278 Identities=15% Similarity=0.084 Sum_probs=223.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL--QADKITYTILLSEHLKQAETKQALGL 459 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 459 (675)
+..+|...|....++ +.-+.++...+..+|...+++++|.++|+.+.+..+ ..+..+|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467899999985554 344457778899999999999999999999987532 2355677766543322 223333
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044815 460 F-CRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQIG 537 (675)
Q Consensus 460 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 537 (675)
+ +.+.+.. +-.+.+|.++..+|.-+++.+.|++.|+++++.+ | ...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 3 3444442 5578999999999999999999999999999854 4 678999999999999999999999999875
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 538 CAPDN-ITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 538 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
+.|+. ..|-.+.-.|.+.++++.|+-.|+++++ +.|.. +....++..+.+.|+.|+|+++++++.. +.++..--
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 33432 3555677789999999999999999999 77755 4556788899999999999999999765 34555556
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..+..+...+++++|+..++++.+.-|+ +...+..++.+|-+.|+.+.|..-+.-+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6778888999999999999999999998 899999999999999999999988765543
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.3e-14 Score=141.57 Aligned_cols=258 Identities=17% Similarity=0.140 Sum_probs=86.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 373 LIYGHCKVGNFERAYDLMDLMGKEG-CTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
+...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455556666666666664433322 1223333444444555566666666666666654322 34445555554 5666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAG-LFPTKETYTSMICGYLRDGNISSAVKYF 530 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (675)
++++|..++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666655443 2344555666666777777777777777765432 2345666677777777777777777777
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC
Q 044815 531 QRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KL 607 (675)
Q Consensus 531 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 607 (675)
++..+. .|+ ......++..+...|+.+++.++++...+.. ..|...+..++.+|...|+.++|+.++++..+ +.
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 777763 354 5566667777777777777777777666532 22334556677777777777777777777655 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 608 WIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
++.....++.++.+.|+.++|..+.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566667777777777777777777766543
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=5.1e-09 Score=104.49 Aligned_cols=496 Identities=12% Similarity=0.114 Sum_probs=295.7
Q ss_pred HHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044815 163 FAEIGRLKEGFSMVIEMTNNG-LPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTE 241 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (675)
+.++|+...-...|...+..- +......|...+......|-.+-+..++++..+. ++..-+-.|..+++.+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 334444444444555443321 1223356777777777788888899999988865 55557788889999999999
Q ss_pred HHHHHHHHhHCC------CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHH
Q 044815 242 ADRWLSAMLDRG------AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN--VYTHTVLIDGLCKKGWTE 313 (675)
Q Consensus 242 A~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 313 (675)
|.+.+...+... .+.+.-.|..+-....+..+.+.--....++..+... -+| ...|+.|.+-|.+.|.++
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhH
Confidence 999888876542 1223334444444444432111111222333333332 233 347899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------------------hHHHHHHHHHHHHcC---------
Q 044815 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK----------------------MNRAEMLLERMKEQG--------- 362 (675)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------------------~~~A~~~~~~m~~~g--------- 362 (675)
+|..+|++.+..- ..+..|..+.+.|..-.. ++-...-|+.+...+
T Consensus 266 karDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 266 KARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999887642 344445555555543211 122223333333221
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 363 --LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPN------IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ 434 (675)
Q Consensus 363 --~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 434 (675)
-+.++..|..-+.. ..|+..+-...|.+..+. +.|. ...|..+.+.|-..|+++.|..+|++..+-..+
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 11133334333322 346677777778777653 1221 345778899999999999999999998765433
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 435 AD---KITYTILLSEHLKQAETKQALGLFCRMVKAGL-----------NP------DIHAYTTLIAAFCRQKKMKESEKF 494 (675)
Q Consensus 435 ~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~p------~~~~~~~li~~~~~~g~~~~A~~~ 494 (675)
.- ..+|..-...-.++.+++.|+++.+.....-- ++ +...|..+++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 22 34566666677778899999998877654211 11 223455556666667889999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 044815 495 FQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN-ITYGALISGLCK---QSKLDEACQFYESMIG 570 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 570 (675)
++++++..+. ++.........+-.+.-++++.+.+++-+..--.|+. ..|+..+.-+.+ ...++.|..+|+++++
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999987653 4444333344445566788999999887664334553 356665554432 3468899999999998
Q ss_pred CCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhhCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 571 KGISPCEVTRVTLAYE--YCKQGDSATAMIILESLDKKL----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 571 ~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
|.+|...-+.-|+.+ =-+-|....|+.+++++...- -...||..|.--...=-+..-..+|+++++.-|+-+.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 555544322222222 224578888888988876532 2334565554433322333445566666666443222
Q ss_pred H-HHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 645 V-SLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 645 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
. .....++.-.+.|..+.|+.++.-..+
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 2 223345555667777777776655443
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.7e-11 Score=115.38 Aligned_cols=283 Identities=14% Similarity=0.077 Sum_probs=215.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044815 363 LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTI 442 (675)
Q Consensus 363 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 442 (675)
..-+......-.+-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-+.+=.++.+. .+....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34466666667777778889999999999888764 667777777777888888888888777777775 4566778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+.--|.-.|+..+|.+.|.+...-+ +.-...|..+.+.|+-.|..++|...+..+.+.- +-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 8888888899999999998876653 2235678889999999999999999988877641 1112223345556788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK--GISP----CEVTRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~A 596 (675)
.+-|.++|.+.... .+.|+..++-+.-.....+.+.+|..+|+..++. .+.+ -..+++.|+.+|.+++.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999988763 2345777777777777788999999999988731 1111 234678899999999999999
Q ss_pred HHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 597 MIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 597 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
+..+++... +.+..++.+++-.|...|+++.|++.|.+++-..|. |..+-..|.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~-n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD-NIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 999998654 457888999999999999999999999999888876 544444443
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.1e-11 Score=107.95 Aligned_cols=300 Identities=17% Similarity=0.197 Sum_probs=215.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH--HHHHH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNV--HTYTA 337 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~ 337 (675)
.|-.-++.+.. .+.++|.++|-+|.+... .+..+.-+|.+.|-+.|.+|.|+++-+.++++.+..-+. .....
T Consensus 38 ~Yv~GlNfLLs----~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLLS----NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHhh----cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444444444 478888888888887532 256677788899999999999999988887754333222 23456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHH
Q 044815 338 MISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNI----YAYNAIIDGLC 413 (675)
Q Consensus 338 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~ 413 (675)
|..-|...|-+|.|+.+|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 777788899999999999998875432 4556777888999999999999999988877644332 24555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 414 KKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEK 493 (675)
Q Consensus 414 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 493 (675)
...+++.|..++.+..+.+. ..+..--.+.+.....|+++.|++.++...+.+..--..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 77889999999999887642 33334446777888999999999999999988655556778889999999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 044815 494 FFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC---KQSKLDEACQFYESMIG 570 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 570 (675)
.+.++.+.. +....-..+...-....-.+.|..++.+-... +|+...+..++..-. ..|...+-...++.|+.
T Consensus 271 fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 999988864 34444444544444444456666666555442 688888888887643 33456666667777764
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=5.8e-11 Score=112.02 Aligned_cols=283 Identities=16% Similarity=0.089 Sum_probs=175.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYEL 424 (675)
Q Consensus 345 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 424 (675)
.|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..+..-.++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888877766654442 3345555556667778888888877777653355666666777777777888888777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 425 LKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIH-------AYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
+.++.+.+ +.+........++|.+.|++.+...++..|.+.+.-.+.. +|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777654 3455666777777777788887777777777776554432 445555555555555554555555
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 044815 498 AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK-GISPC 576 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~ 576 (675)
..+. ..-++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+ -.+.+.++...-.+..+...+. +-.|
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 4433 2334555556666666777777777777666665544441 111 1344555655555555555442 2222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
..+.+|+..|.+.+.+.+|...|+...+ .++...|+-+++++.+.|+..+|.++.++.+
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4556666666666666666666665443 4566666666666666666666666666655
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=6.3e-11 Score=108.29 Aligned_cols=290 Identities=15% Similarity=0.119 Sum_probs=209.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 044815 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEG-CTPN--IYAYNAIIDGLCKKGRVQEA 421 (675)
Q Consensus 345 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 421 (675)
.++.++|.++|-+|.+.. +-...+-.+|.+.|.+.|.+|+|+.+.+.+.+.. .+.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888742 2244555678888888899999999988887642 1111 23345677788889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 422 YELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD----IHAYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
.++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+. ...|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887653 34455677888899999999999999888887654433 23455666666677899999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 498 AITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
..+.+. ..+..--.+.+.+...|+++.|.+.|+.+.+.+..--..+...|..+|.+.|+.++...++.++.+....+
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-- 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-- 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence 988653 24445556778889999999999999999886422224577889999999999999999999999854333
Q ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHhhCCChhhHHHHHHHHH---ccCCHHHHHHHHHHHhcCC
Q 044815 578 VTRVTLAYEYCKQGDSATAMI-ILESLDKKLWIRTVNTLIRKLC---SEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~ 639 (675)
.....+..........+.|.. +.+.+.++|+...+..++..-. ..|+..+-...+++|+...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 333344444334444455554 5566778898888888887654 3556777777777776543
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=2.5e-09 Score=109.13 Aligned_cols=406 Identities=11% Similarity=0.001 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 044815 255 ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT 334 (675)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (675)
..|...|..+.-++... |+++.+.+.|++....-+ -..+.|..+...|...|.-..|..+.+.......-++|...
T Consensus 320 qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred cchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 33555555555555554 567766677766554322 24556666666677777766777666555433221222222
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCC
Q 044815 335 YTAMISGYC-KEEKMNRAEMLLERMKEQ--GL--LPNTNTYTSLIYGHCKV-----------GNFERAYDLMDLMGKEGC 398 (675)
Q Consensus 335 ~~~li~~~~-~~~~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~ 398 (675)
+-..-..|. +.+.+++++++-.+.... |. ......|..+.-+|... ....++.+.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 222222222 245566666655555441 11 11223333333333321 11345566666666544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044815 399 TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTL 478 (675)
Q Consensus 399 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 478 (675)
+.|..+...+.--|...++++.|.+..++..+-+...+...|..+.-.+...+++.+|+.+.+...+.- ..|......-
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 222223233344455566777777777777776656677777777777777777777777776655431 1111111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITA---------------------G-------LFPTKETYTSMICGYLRDGNISSAVKYF 530 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~ 530 (675)
++.-...++.+++......+... | ..-...++..+..-.... ...+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhccccc
Confidence 11111233444433332222210 0 000111111111111100 00000000
Q ss_pred HHHHHCCCC--CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 531 QRMNQIGCA--PDN------ITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 531 ~~m~~~~~~--p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
. +...... |+. ..|......+.+.+..++|...+.++.. +.| .+..|+..+..+...|+.++|.+.|.
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 1111111 221 2345566678888999999988888876 333 35667777888999999999999888
Q ss_pred HHhh--CCChhhHHHHHHHHHccCCHHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 602 SLDK--KLWIRTVNTLIRKLCSEKRVGMAAL--FFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 602 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.... +.++.+..+++..+.+.|+..-|.. ++..+++.||. +...|..++..+.+.|+.+.|.+-|..+++
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7543 5577788999999999998777777 99999999999 999999999999999999999999998865
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2e-09 Score=101.75 Aligned_cols=314 Identities=14% Similarity=0.086 Sum_probs=230.5
Q ss_pred CCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 044815 330 PNVHTYTAMISGYC--KEEKMNRAEMLLERMKEQ-GLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYN 406 (675)
Q Consensus 330 ~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 406 (675)
|...+....+.++. -.++-..|...+--+... -++-|+.....+.+.+...|+.++|+..|+.....+ +-++....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHH
Confidence 33333333344433 344444454444333332 355678888999999999999999999999887653 22233334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK 486 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 486 (675)
...-.+.+.|+.+....+...+.... ......|-.-...+...++++.|+.+-++.++.+ +-+...|-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 44555677899998888888877642 2344445555566677889999999999988865 335666766677888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI-SGLC-KQSKLDEACQF 564 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~ 564 (675)
++++|.-.|+.+....+ -+..+|..|+.+|...|++.+|..+-+..... +..+..+.+.+. ..+. ....-++|..+
T Consensus 349 R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999999887542 47889999999999999999999888776552 334555655543 2222 23345889999
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 565 YESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 565 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
++..+. +.|+- .....++..+...|..++++.++++... .+|....+.|++.+...+.+++|+..|..++..+|+
T Consensus 427 ~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~- 503 (564)
T KOG1174|consen 427 AEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK- 503 (564)
T ss_pred HHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-
Confidence 999888 66764 4556788889999999999999999665 578888899999999999999999999999999998
Q ss_pred CHHHHHHHH
Q 044815 643 DRVSLAALK 651 (675)
Q Consensus 643 ~~~~~~~l~ 651 (675)
|..+...+-
T Consensus 504 ~~~sl~Gl~ 512 (564)
T KOG1174|consen 504 SKRTLRGLR 512 (564)
T ss_pred chHHHHHHH
Confidence 877776553
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=1e-10 Score=120.48 Aligned_cols=253 Identities=15% Similarity=0.135 Sum_probs=122.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCC
Q 044815 175 MVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGA 254 (675)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 254 (675)
.+..+...|+.|+..||..++..||..|+.+.|- +|.-|..+..+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445566677777777777777777777777776 6776666555556666666666666666655444
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCC-CChh-------------hHHHHHHHHHhcCCHHHHH
Q 044815 255 ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVR----KGWK-PNVY-------------THTVLIDGLCKKGWTEKAF 316 (675)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~-------------~~~~l~~~~~~~g~~~~A~ 316 (675)
.|...||..|+.+|...|+.-.++.+.+.++.+.. .|+. |... .-...+....-.|-.+.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 45666667777776666443334444443333221 1110 0000 0011122222223333333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 044815 317 RLFLKLVRSDNYKPNVHTYTAMISGYCK-EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGK 395 (675)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (675)
+++..+.......|-.. .+.-... ...+++-..+.....+ .|+..+|..+++.-...|+.+.|..++.+|.+
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 33322211111111111 1111111 1112222222222221 35555566565555556666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 396 EGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK 449 (675)
Q Consensus 396 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 449 (675)
.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+.+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 6655555555555444 55555555555555555666665555554444444
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=8e-09 Score=95.73 Aligned_cols=421 Identities=13% Similarity=0.069 Sum_probs=259.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR 238 (675)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 238 (675)
+..++...|++++|...+..+.+.. .++...+-.|.-++.-.|.+.+|..+-++.. .++-.-..|...-.+.|+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCc
Confidence 4457789999999999999887765 5666677777777788899999998866553 355566667777788888
Q ss_pred HHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHH
Q 044815 239 VTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVL-IDGLCKKGWTEKAFR 317 (675)
Q Consensus 239 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 317 (675)
-++-..+-+.+.+.- .|. ....--.|.+ -.+++|++++..+... .|+-...|.- .-+|.+..-++-+.+
T Consensus 137 Ek~~~~fh~~LqD~~--Edq--LSLAsvhYmR----~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL--EDQ--LSLASVHYMR----MHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred HHHHHHHHHHHhhhH--HHH--HhHHHHHHHH----HHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 777777666654421 111 1122223344 3689999999998876 3444555543 456788888998988
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 044815 318 LFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG-----NFERAYDLMDL 392 (675)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~ 392 (675)
++.-.++.. +.+...-|.......+.=+-..|.+-..++...+-.. -..+.-.|+.+ .-+.|++++--
T Consensus 207 vl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 207 VLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchH
Confidence 888777654 3445556655555555333333444444444432211 12333444432 34677777766
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHcC
Q 044815 393 MGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILL-----SEHLKQAETKQALGLFCRMVKAG 467 (675)
Q Consensus 393 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~A~~~~~~m~~~~ 467 (675)
+.+. -|.. --.|+-.|.+.+++.+|..+.+++.- ..|-......++ +-.......+-|...|+..-+.+
T Consensus 280 L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 280 LMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred HHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 6553 2333 34566778899999999999887521 122222222222 11222233555666666655544
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044815 468 LNPDI-HAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYG 546 (675)
Q Consensus 468 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 546 (675)
..-|. .--.++..++.-..++++...+++.+...-...|...| .+.++++..|++.+|.++|-++....++.+..-..
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 33332 12234445555557788888888877765333333333 46788899999999999998876544443444445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhH
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLDK-KLWIRTV 612 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 612 (675)
.+.++|.+.++++-|..++-.+-. ..+..+. ..++..+.+++.+=-|.+.|+.++. .|++.-|
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 567788899999888776655432 2223333 3356677888888888888888776 3444444
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=2e-08 Score=100.72 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=104.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRW 245 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 245 (675)
.+++...++..+.+++ +.+....+.....-.+...|+-++|......-.... ..+.++|..+.-.+....++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3455555555555544 223333444444444555666666666555544322 33555666666555556666666666
Q ss_pred HHHHhHCCCCCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 246 LSAMLDRGAILDN-ATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 246 ~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
|......+ ||. ..+.-+--.-.+. ++++.....-..+.+.. ......|..+..++.-.|+...|..+.+...+
T Consensus 98 y~nAl~~~--~dN~qilrDlslLQ~Qm---Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 98 YRNALKIE--KDNLQILRDLSLLQIQM---RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665543 222 2222222111221 34444443333333321 11334455555555556666666666665544
Q ss_pred cCCCCCCHHHHHHHHH------HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 325 SDNYKPNVHTYTAMIS------GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 325 ~~~~~~~~~~~~~li~------~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
.....|+...|..... ...+.|..++|.+.+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 4333344444433222 223345555555555443321 1111111223344455666666666666666655
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=4.3e-10 Score=106.26 Aligned_cols=283 Identities=14% Similarity=0.102 Sum_probs=131.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 309 KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYD 388 (675)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 388 (675)
.|++.+|.+...+..+ .+ +-....|..-..+.-+.|+.+.+-.++.+.-+..-.++...+.+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae-~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAE-HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhh-cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4555555555544322 11 112233333444444555555555555555543223334444444444555555555555
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 044815 389 LMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI-------TYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 389 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
-.+.+.+.+ +-+........++|.+.|++.....++.++.+.+.-.|.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 555555443 3344455555555555555555555555555555443332 34444443333333333333343
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
..... ...++..-..++.-+.++|+.++|.++..+..+.+..|+ . ...-.+.+-++...-++..++-.+. .+-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 33322 223344444455555555555555555555555443333 1 1111223344444444444443331 1122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
+..+.+|...|.+.+.+.+|...|+..++ ..|+..++..++.++.+.|+.++|.+..++
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555555555555555555554 344555555555555555555555555544
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=4.4e-09 Score=108.38 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=46.3
Q ss_pred HHHHHHccC-CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 615 LIRKLCSEK-RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 615 l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
++..+.+.. =.++|.++++-+.+..++ +..||.....+|.+.|++-.|.+.+.++
T Consensus 462 ~GekL~~t~dPLe~A~kfl~pL~~~a~~-~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 462 LGEKLLKTEDPLEEAMKFLKPLLELAPD-NIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred cHHHHhcCCcHHHHHHHHHHHHHHhCcc-chhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 444455544 468899999999999998 9999999999999999999999988764
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=4.3e-08 Score=98.03 Aligned_cols=456 Identities=11% Similarity=0.111 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 044815 189 STLNRVVGIACELGLVEYAEEVFDEMCAR-GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITA 267 (675)
Q Consensus 189 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 267 (675)
..|...+..+.++|++..-...|+..... -+......|...+.-.-..+-++.+..+|++.++. ++..-+..|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45777777788899999999999887653 23334567888888888888899999999999875 44446677777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCCH--HHHHHH
Q 044815 268 FCDKGFRGSIKQAFELLEEMVRK------GWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD-NYKPNV--HTYTAM 338 (675)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~~l 338 (675)
+++. +++++|.+.+...+.. ..+.+...|..+.+...+.-+.-..+.+ +.+++.+ +.-+|. ..|+.|
T Consensus 179 L~~~---d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 179 LAKS---DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHhc---cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHH
Confidence 7776 7899999988887643 1234556677776666665443333332 2222211 112443 468899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhcCC
Q 044815 339 ISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMG-KEGCTPNIYAYNAIIDGLCKKGR 417 (675)
Q Consensus 339 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~ 417 (675)
.+.|.+.|.+++|.++|++.... ...+.-|+.+.++|..-..-.-+..+ +... +.|-+-+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~d------------- 318 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVD------------- 318 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhh-------------
Confidence 99999999999999999998764 22444566666666543221111111 1011 1111111111
Q ss_pred HHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 044815 418 VQEAYELLKKAFQR-----------ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD------IHAYTTLIA 480 (675)
Q Consensus 418 ~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~li~ 480 (675)
++-.+.-|+.+.+. .-+.++..|..-+. +..|+..+-...+.+.++. +.|. ...|..+..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 12222222222221 12334445544333 3456777777777777764 2332 345777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----------CCC-------
Q 044815 481 AFCRQKKMKESEKFFQEAITAGLFPT---KETYTSMICGYLRDGNISSAVKYFQRMNQIG----------CAP------- 540 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~p------- 540 (675)
.|-..|+++.|..+|++..+....-- ..+|..-...-.+..+++.|++++++....- ..|
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88888999999999988887643211 2345555555667788888888887765321 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---CC-ChhhHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK---KL-WIRTVNTLI 616 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~~l~ 616 (675)
+...|..+++.--..|-++....+|+++++..+. ++......+..+....-++++.+++++-.. .| -...|++.+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 1224555566666678888999999999986553 344445555566666778889999887433 22 244677766
Q ss_pred HHHHc---cCCHHHHHHHHHHHhcCCCCCCHH-H-HHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 617 RKLCS---EKRVGMAALFFHKLLGKDQNVDRV-S-LAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 617 ~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~-~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..+.+ ..+.+.|..+|+++++..| |... | |...+..--+-|-...|..+++++..+
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 65543 3378999999999999655 4433 2 233333344567778888888887553
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.2e-09 Score=102.69 Aligned_cols=443 Identities=14% Similarity=0.124 Sum_probs=224.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCC
Q 044815 195 VGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFR 274 (675)
Q Consensus 195 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 274 (675)
++.+...|++++|++...++...+ +-+...+..-+.++++.+++++|+.+.+.-... ..+...+ +=.+||... .
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yr-l 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYR-L 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHH-c
Confidence 344455666677777666666553 445566666666666777777766444432210 0011110 233444432 2
Q ss_pred CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKP-NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEM 353 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 353 (675)
+..++|+..++- ..+ +..+...-...+.+.|++++|+++|+.+.+...-.-+...-..++..-. +..
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~ 160 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQ 160 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhh
Confidence 566666666662 222 2234444456667777777777777776553321111111111111100 000
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------C------CCCCH-HHHHHHHHHHHhcCC
Q 044815 354 LLERMKEQGLLPN--TNTYTSLIYGHCKVGNFERAYDLMDLMGKE-------G------CTPNI-YAYNAIIDGLCKKGR 417 (675)
Q Consensus 354 ~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g------~~~~~-~~~~~li~~~~~~g~ 417 (675)
. +.+......|+ ...+......+...|++.+|+++++...+. + +.-.. ..-..+...+...|+
T Consensus 161 ~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 V-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred H-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0 01222222221 112222233445667777777777666211 0 00001 111234455667788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHH-HHHHHHHHHH-----------HcCCCCCHHHHHHHHHH
Q 044815 418 VQEAYELLKKAFQRELQADKITY----TILLSEHLKQAETK-QALGLFCRMV-----------KAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 418 ~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~-~A~~~~~~m~-----------~~~~~p~~~~~~~li~~ 481 (675)
.++|..++...++.+ .+|.... |.|+..-....-++ .++..++... ...-.-...--+.++..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777764 3343222 22221111111011 1111111111 11001011112233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-HH-HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMIC-GY-LRDGNISSAVKYFQRMNQIGCAPD--NITYGALISGLCKQSK 557 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~-~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~ 557 (675)
|. +..+.+.++-..... ..|.. .+..++. ++ ++...+.+|.+++...-+. .|. ....-..+......|+
T Consensus 319 ~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred Hh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCC
Confidence 33 444455544433322 22333 3333333 33 2233577788888877663 344 3445556666788999
Q ss_pred HHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCChhh----HHHHHHHHH
Q 044815 558 LDEACQFYE--------SMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-----KLWIRT----VNTLIRKLC 620 (675)
Q Consensus 558 ~~~A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~----~~~l~~~~~ 620 (675)
++.|++++. ...+.+..| .+...+...|.+.++.+.|..++.+..+ ...... +.-.+..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999999 555555555 3555667778888887777777776543 112222 333333344
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 621 SEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
+.|+-++|..+++++.+.+++ |..+...++.+|++.. .+.|..+-+
T Consensus 470 r~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 679999999999999998887 8899999988887764 355554433
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.6e-11 Score=110.65 Aligned_cols=239 Identities=13% Similarity=0.126 Sum_probs=161.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044815 397 GCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYT 476 (675)
Q Consensus 397 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 476 (675)
|+..|-..-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-+.|.+..++..|+.++.+-.+. ++-++....
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~ 294 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLL 294 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhh
Confidence 34445555567888888888888888888887765 556667777888888888888888888777765 233343344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS 556 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 556 (675)
.....+-..++.++|.++++...+... -+++....+..+|.-.++.+-|+.+++++.+.|+. +...|+.+.-+|.-.+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 556666777888888888887777542 35666666667777777888888888888877754 5666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 557 KLDEACQFYESMIGKGISPCE--VTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 557 ~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
++|-++.-|++.+..--.|+. .+|+.++....-.|++..|.+-|+-.... .....+|.|+-.-.+.|++++|..++
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 888888777777654333332 45566666666666666666666654432 23445666666566666666666666
Q ss_pred HHHhcCCC
Q 044815 633 HKLLGKDQ 640 (675)
Q Consensus 633 ~~~~~~~~ 640 (675)
..+.+..|
T Consensus 453 ~~A~s~~P 460 (478)
T KOG1129|consen 453 NAAKSVMP 460 (478)
T ss_pred HHhhhhCc
Confidence 66655544
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=6.9e-09 Score=106.04 Aligned_cols=475 Identities=14% Similarity=0.097 Sum_probs=283.0
Q ss_pred CCChhHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 044815 146 NGNFERAHEVMQCMVSSFAEIGRLKEGFSMVI----EMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCA 221 (675)
Q Consensus 146 ~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 221 (675)
.++.++. .+...+-.+++-..+.+++....- ++....+..++..|..+.-++...|+++.+.+.|++....- --
T Consensus 278 ~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~ 355 (799)
T KOG4162|consen 278 KSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FG 355 (799)
T ss_pred CCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hh
Confidence 3444443 333333345666666666654433 33334455678888888888889999999999998876532 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--CC--CCChh
Q 044815 222 DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK--GW--KPNVY 297 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~ 297 (675)
....|+.+...|...|.-..|..++++-......|+..+--.++...|-.. .+.+++++.+-.+.++. +. .....
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~-l~~~eegldYA~kai~~~~~~~~~l~~~ 434 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER-LKLVEEGLDYAQKAISLLGGQRSHLKPR 434 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 556788888888888888888888887765543454444444444444422 36777777777666652 11 11233
Q ss_pred hHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044815 298 THTVLIDGLCKK-----------GWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN 366 (675)
Q Consensus 298 ~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 366 (675)
.|-.+.-+|... -...++++.+++..+.++-.|++..|-.+- |...++++.|.+..++..+.+-.-+
T Consensus 435 ~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 435 GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 444444444321 123456666777766665555555444433 4456677777777777777655556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044815 367 TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSE 446 (675)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 446 (675)
...|..|.-.+...+++.+|+.+.+.....- ..|......-++.-..-++.++|......+..- ++ +.. .
T Consensus 513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~-------~ 582 (799)
T KOG4162|consen 513 AKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEY-------G 582 (799)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhh-------h
Confidence 7777777777777777777777777655431 112222222233333456666666665554421 00 000 0
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HhHHHHHHHH
Q 044815 447 HLKQAETKQALGLFCRMVKA--GLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF--PT------KETYTSMICG 516 (675)
Q Consensus 447 ~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~------~~~~~~li~~ 516 (675)
....++-....+....+.-. ...-.+.++..+.......+....-... +...-+. |+ ...|......
T Consensus 583 ~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~ 659 (799)
T KOG4162|consen 583 VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADL 659 (799)
T ss_pred HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHH
Confidence 00011111111111111100 1111223333333222211111000000 1111111 22 2345566777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 595 (675)
+.+.+..++|...+.+..... .-....|......+...|..++|.+.|...+. +.|++ ....+++.++.+.|+..-
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcch
Confidence 888999999998888887642 33456677777778889999999999999988 77876 455789999999998877
Q ss_pred HHH--HHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 596 AMI--ILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 596 A~~--~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
|.+ ++..+.+ +.+...|..++..+.+.|+.++|.+.|+.+++....
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 777 8888766 347889999999999999999999999999887654
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=1.8e-10 Score=109.56 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG 551 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 551 (675)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45666677777777888888888877776532 345667777777888888888888888777643 2345566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHH
Q 044815 552 LCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 628 (675)
+...|++++|.+.++++++....+ ....+..++..+...|++++|.+.+++.... .+...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887642222 2345566778888888888888888886552 3456677888888899999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 629 ALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 629 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...++++++..+. +...+..++..+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999998887554 677777888888899999999988887654
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=5.4e-08 Score=97.72 Aligned_cols=432 Identities=13% Similarity=0.122 Sum_probs=271.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 044815 190 TLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFC 269 (675)
Q Consensus 190 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 269 (675)
.|...+.+| ..+++...+++.+.+.+. .+-...+.....-.++..|+-++|......-.+.++. +.+.|..+ ..+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~-gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVL-GLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHH-HHHH
Confidence 344555544 678888888888888873 3445566666666778889999999888887765433 33444443 3444
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH
Q 044815 270 DKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMN 349 (675)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 349 (675)
+. ..++++|++.|....+.+. .|...+..+.-.-.+.|+++.......+.++.. +.....|..+..++.-.|++.
T Consensus 86 R~--dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 86 RS--DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred hh--hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHH
Confidence 43 2789999999999887653 367788877777788888888888777776633 334566778888888889999
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 350 RAEMLLERMKEQG-LLPNTNTYTSLIYGH------CKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422 (675)
Q Consensus 350 ~A~~~~~~m~~~g-~~p~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 422 (675)
.|..++++..+.. ..|+...|.-..... .+.|.+++|.+.+..-... +.-....-..-...+.+.+++++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999888754 346666665443322 3567777777776655443 1112233345667788899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHL-KQAETKQAL-GLFCRMVKAGLNPDIHAYTTLI-AAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 499 (675)
.++..++.. .||..-|......+. +-.+.-+++ .+|....+. .|....-..+- .......-.+...+++..+.
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 999998876 466666655444333 344444444 555555443 22222111111 11111233444556667777
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC------------CCCHHHH--HHHHHHHHhcCCHHHHHH
Q 044815 500 TAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI--GC------------APDNITY--GALISGLCKQSKLDEACQ 563 (675)
Q Consensus 500 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~------------~p~~~~~--~~l~~~~~~~g~~~~A~~ 563 (675)
+.|+++ ++..+...|-.-...+-..++.-.+... |. +|....| -.++..+-+.|+++.|..
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777643 3344444443222222111222222110 11 3444433 446677888899999999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhH-H-HHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 564 FYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKLWIRTV-N-TLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 564 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~-~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+++.+++ -.|+.. .|..-+..+...|++++|..++++...-+.+..+ | --+.-..+.++.++|.++..+..+.|.
T Consensus 393 yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 393 YIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9998887 456543 3344567888899999999999988775443332 3 455556778899999988888877765
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.3e-07 Score=96.17 Aligned_cols=504 Identities=13% Similarity=0.149 Sum_probs=274.9
Q ss_pred hCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHH-----------------HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 044815 125 GFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCM-----------------VSSFAEIGRLKEGFSMVIEMTNNGLPLI 187 (675)
Q Consensus 125 ~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~l-----------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~ 187 (675)
....|.|.- ...++....++|-+..|.+.|+.+ +..|...-.++++.+.+..|...+++.+
T Consensus 600 gN~mFtHyD--ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqN 677 (1666)
T KOG0985|consen 600 GNDMFTHYD--RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQN 677 (1666)
T ss_pred hcccccccc--HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 344566654 345667777888888888776643 3367777788999999999999988888
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhH-----
Q 044815 188 TSTLNRVVGIACELGLVEYAEEVFDEMCAR-----------GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLD----- 251 (675)
Q Consensus 188 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 251 (675)
..+.-.+..-|..+=-.+...++|+..... ++..|+...--.|.+.|+.|++.+..++.++---
T Consensus 678 lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpEr 757 (1666)
T KOG0985|consen 678 LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPER 757 (1666)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHH
Confidence 888888888888777777777888776532 3455666667788999999998888776654211
Q ss_pred -------CC---CCC-----CHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH--------------
Q 044815 252 -------RG---AIL-----DNA-TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV-------------- 301 (675)
Q Consensus 252 -------~g---~~~-----~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------- 301 (675)
.. -.| |.. ...-++.-+.+ .+..+-+++|-+-+.-+ ..+.+...
T Consensus 758 vKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyr----nn~~kyIE~yVQkvNps--~~p~VvG~LLD~dC~E~~ik~L 831 (1666)
T KOG0985|consen 758 VKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYR----NNLQKYIEIYVQKVNPS--RTPQVVGALLDVDCSEDFIKNL 831 (1666)
T ss_pred HHHHHHhccccccCceEEEecccccHHHHHHHHHH----hhHHHHHHHHHhhcCCc--ccchhhhhhhcCCCcHHHHHHH
Confidence 00 000 100 01111111222 12333333332211111 01111111
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH-HH---HHHHH------H
Q 044815 302 ------------LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRA-EM---LLERM------K 359 (675)
Q Consensus 302 ------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A-~~---~~~~m------~ 359 (675)
|..-.-+.++..--...++..+..+ ..|..++|+|...|...++-.+- ++ .|+.. .
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 1111222333333333333333322 24566667666666655442221 10 01100 0
Q ss_pred Hc-----------CCCCCH---------HHHHHHHHHHHhcCCHH---HH--------HHHHHHHhhcCCC--CCHHHHH
Q 044815 360 EQ-----------GLLPNT---------NTYTSLIYGHCKVGNFE---RA--------YDLMDLMGKEGCT--PNIYAYN 406 (675)
Q Consensus 360 ~~-----------g~~p~~---------~~~~~li~~~~~~g~~~---~A--------~~~~~~m~~~g~~--~~~~~~~ 406 (675)
++ |.. |. ..|......+.+..+.+ +. ..+.+...+.+++ .|+....
T Consensus 910 KRDP~lA~vaYerGqc-D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS 988 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQC-DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVS 988 (1666)
T ss_pred ccCCceEEEeecccCC-cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHH
Confidence 00 000 11 11112222222222221 11 1233333333322 2344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQREL--QADKITYTILLSEHLKQAETKQALGLFCRMVKAGL---------------- 468 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---------------- 468 (675)
.-+.++...+-..+-+++++++.-.+. .-+...-|.|+-...+ -+.....++.+++-..+.
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEA 1067 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHH
Confidence 566777777777777777777653211 1111112222221111 122222222222222110
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 469 -------NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 469 -------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
..+....+.|+.- -+.++.|.++-++. -....|..+..+-.+.|.+.+|++-|-+. .|
T Consensus 1068 F~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dD 1132 (1666)
T KOG0985|consen 1068 FAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DD 1132 (1666)
T ss_pred HHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CC
Confidence 1122222222221 13333333333222 34667888888888889988888877543 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCS 621 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (675)
+..|..+++...+.|.+++-.+++..+.++.-.|... ..|+.+|++.+++.+-.++ ...|+......+++-|..
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f----i~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF----IAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH----hcCCCchhHHHHhHHHhh
Confidence 6788999999999999999999888888776666543 4678899999988775444 345666677788888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
.|.++.|.-+|. +...|..|+..+...|+++.|.+...|+
T Consensus 1207 ~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888887775 4456777788888888888887776665
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3e-07 Score=87.40 Aligned_cols=302 Identities=14% Similarity=0.050 Sum_probs=188.8
Q ss_pred CChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HH
Q 044815 294 PNVYTHTVLIDGL--CKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTN-TY 370 (675)
Q Consensus 294 ~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~ 370 (675)
|+..+....+.++ +-.++...|...+.-+.....++-|+.....+...+...|+.++|+..|++.... .|+.. ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 3333333334433 3345555555555444444445666777778888888888888888888877653 33321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQ 450 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 450 (675)
....-.+.+.|+++....+...+.... .-+...|-.-...+...++++.|+.+-++.++.+ +.+...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 111222346677777777766665432 1223333333344455677888888877777643 33445555556677778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHH-cCCHHHHHH
Q 044815 451 AETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI-CGYLR-DGNISSAVK 528 (675)
Q Consensus 451 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~ 528 (675)
+++++|.-.|+...... +.+...|..|+++|...|++.+|.-.-+...+. +.-+..+.+.+. ..+.. -.--++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 88888888887776642 456778888888888888888877776665543 223444544442 22222 122367788
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 529 YFQRMNQIGCAPDN-ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 529 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++++... +.|+- ...+.+...+...|..++++.++++.+. ..||....+.|+..+...+.+++|...|.....
T Consensus 426 f~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 426 FAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8777665 45663 3556667777788888888888888877 567777788888888888888888887776543
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=7e-10 Score=112.69 Aligned_cols=195 Identities=18% Similarity=0.231 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CCH-
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITA-----G-LFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQI-----GCA-PDN- 542 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~- 542 (675)
.+...|...+++++|..+|+++... | ..|. ..+++.|...|.+.|++++|..++++..+. |.. |..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4556666667777777777666542 1 1111 235566666677777777776666654431 211 222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhC---------
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGK---GISPCE----VTRVTLAYEYCKQGDSATAMIILESLDKK--------- 606 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 606 (675)
..++.++..|+..+++++|..+++...+. -+.++. .++..|+..|.+.|++++|.++++++...
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 24566677788888888888888876642 122222 45667888888888888888888886542
Q ss_pred -CChhhHHHHHHHHHccCCHHHHHHHHHHHhcC----CCC-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 607 -LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGK----DQN-VD-RVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 607 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.....++.++..|.+.+++++|.++|.+.... ||. |+ ..+|.+|+.+|...|++++|.++.++++
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11334677888888888888888888876543 332 22 3478889999999999999999988876
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=1.1e-09 Score=117.11 Aligned_cols=231 Identities=12% Similarity=0.053 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhC
Q 044815 366 NTNTYTSLIYGHCK-----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKK---------GRVQEAYELLKKAFQR 431 (675)
Q Consensus 366 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~ 431 (675)
+...|...+.+-.. .+++++|...|++..+.. +.+...|..+..++... +++++|...++++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555544321 123567777777776653 22344555555544322 2356666666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044815 432 ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYT 511 (675)
Q Consensus 432 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 511 (675)
+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...++++.+.... +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 3 3345556666666666666777777766666653 334555666666666667777777777666665422 122222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCK 589 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~ 589 (675)
.++..+...|++++|+..++++.+.. .| +...+..+..++...|++++|...++++.. ..|+.... ..+...|..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhc
Confidence 33334555666666666666665432 23 233455555666666666666666666544 23333222 334445555
Q ss_pred cCCHHHHHHHHHHHhh
Q 044815 590 QGDSATAMIILESLDK 605 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~ 605 (675)
.| ++|...++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 488 NS--ERALPTIREFLE 501 (553)
T ss_pred cH--HHHHHHHHHHHH
Confidence 55 355555555433
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=6.9e-08 Score=99.68 Aligned_cols=292 Identities=17% Similarity=0.146 Sum_probs=195.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMG---- 237 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 237 (675)
.+...|++++|++.++.-... +.............+.+.|+.++|..++..+++++ +.|..-|..+..++.-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 456778888888888775444 44556677888889999999999999999999986 345555555555553332
Q ss_pred -CHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 044815 238 -RVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIK-QAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKA 315 (675)
Q Consensus 238 -~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 315 (675)
..+...++|+++...- |.......+.-.+.. | ..+. .+...+..+..+|++ .+++.|-..|....+.+-.
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g--~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-G--DEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-H--HHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 4677788888887653 333333333222222 1 2343 344566667777765 3455666666655555555
Q ss_pred HHHHHHHHhcC-------------CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 044815 316 FRLFLKLVRSD-------------NYKPNVH--TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCK 379 (675)
Q Consensus 316 ~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 379 (675)
.+++....... .-+|... ++..+...|...|++++|+.++++.++. .|+ +..|..-...+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 55555543221 1134443 4456677788899999999999988885 344 6778888888889
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcC
Q 044815 380 VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKI------TY--TILLSEHLKQA 451 (675)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~~ 451 (675)
.|++++|.+.++...+.. .-|-..-+..+..+.+.|++++|.+++....+.+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988775 3355555667788889999999999988887665422211 12 33466788888
Q ss_pred CHHHHHHHHHHHHHc
Q 044815 452 ETKQALGLFCRMVKA 466 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~ 466 (675)
++..|++.|..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 888888877666543
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.9e-09 Score=115.26 Aligned_cols=218 Identities=11% Similarity=0.001 Sum_probs=118.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 346 EKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELL 425 (675)
Q Consensus 346 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 425 (675)
+++++|...+++..+.+.. +...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456666666666654222 45556666666666677777777777666654 334556666666666777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 044815 426 KKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP 505 (675)
Q Consensus 426 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (675)
+++.+.++. +...+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...+.++..... .
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~ 473 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-T 473 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-h
Confidence 776665432 22222233334555666777777776665543222344455666666677777777777766554321 1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQI-GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
+....+.+...|+..| ++|...++.+.+. ...+....+ +...+.-.|+.+.+... +++.+.|
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2333444455555555 3566655555432 112222222 22234445555555544 6665543
No 75
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=3.4e-08 Score=102.39 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 044815 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAI 408 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 408 (675)
.|+..+|..++++-...|+.+.|..++.+|.+.|++.+..-|-.|+-+ .++..-++.+++.|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 477777777777777777777777777777777777777666666544 66677777777777777777777777655
Q ss_pred HHHHHh
Q 044815 409 IDGLCK 414 (675)
Q Consensus 409 i~~~~~ 414 (675)
+..+..
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 544444
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=6.9e-10 Score=108.47 Aligned_cols=233 Identities=12% Similarity=-0.016 Sum_probs=168.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044815 411 GLCKKGRVQEAYELLKKAFQREL-QA--DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487 (675)
Q Consensus 411 ~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 487 (675)
.....+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 34455778889999988886432 12 23568888889999999999999999999875 4468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
+++|...|++..+... -+...|..+...+...|++++|++.+++..+. .|+..........+...+++++|...+++
T Consensus 114 ~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999998653 24677888889999999999999999999884 46543222222234457789999999977
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 568 MIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK---------KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 568 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
.... ..|+... ....+...|+.+++ +.++.+.+ +.....|..++..+.+.|++++|+..|+++++.
T Consensus 191 ~~~~-~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK-LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh-CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6643 2333222 22334445666544 34444332 123457889999999999999999999999999
Q ss_pred CCCCCHHHHH-HHHHH
Q 044815 639 DQNVDRVSLA-ALKNA 653 (675)
Q Consensus 639 ~~~p~~~~~~-~l~~~ 653 (675)
+|. |.+-+. .++..
T Consensus 266 ~~~-~~~e~~~~~~e~ 280 (296)
T PRK11189 266 NVY-NFVEHRYALLEL 280 (296)
T ss_pred CCc-hHHHHHHHHHHH
Confidence 875 544443 34443
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=2.7e-09 Score=101.43 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLC 413 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 413 (675)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444321 1123334444444444444444444444444332 223333444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 044815 414 KKGRVQEAYELLKKAF 429 (675)
Q Consensus 414 ~~g~~~~A~~~~~~~~ 429 (675)
..|++++|.+.+++..
T Consensus 111 ~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAI 126 (234)
T ss_pred HcccHHHHHHHHHHHH
Confidence 4444444444444443
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=2.9e-09 Score=108.32 Aligned_cols=241 Identities=18% Similarity=0.116 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKE-----GC-TPNIY-AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITY 440 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 440 (675)
.+...+...|...|++++|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 44555666777777777777776665543 10 11111 1223445555555555555555554421
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-hHHHHH
Q 044815 441 TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA-----GL-FPTK-ETYTSM 513 (675)
Q Consensus 441 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l 513 (675)
++.......+--..+++.|..+|++.|++++|..+++++.+. +. .|.+ ..++.+
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 000000011111234445555555555555555555544321 11 1111 124445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCC-HHH
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK----GI--SPC-EVT 579 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~--~p~-~~~ 579 (675)
+..++..+++++|..++++..+. -..++ ..+++.+...|.+.|++++|.+++++++.. +- .+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 55566666666666666654321 01122 236777777777777777777777776642 11 111 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh------C---CChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK------K---LWIRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
++.++..|.+.+++++|.++|.+... + ....+|..|+..|...|++++|.++.+++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45677777777777777777766322 1 123457778888888888888888777665
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.27 E-value=2.4e-07 Score=94.02 Aligned_cols=387 Identities=19% Similarity=0.157 Sum_probs=217.1
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHH
Q 044815 201 LGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQA 280 (675)
Q Consensus 201 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a 280 (675)
..++.+|+.+|-+-- + -...|..|....+|++|+.+-+.. |...-...-...+.++... |+-+.|
T Consensus 544 ~kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt---~qd~ka 608 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDT---GQDEKA 608 (1636)
T ss_pred HhhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhc---Cchhhh
Confidence 345777777764321 1 123456677777788887765432 2211111222333333333 333333
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044815 281 FELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 360 (675)
-++ .. .+-.+ ...|..|.+.|.+-+|......- .....|......+..++.+..-+++|-++|+++..
T Consensus 609 ~el----k~----sdgd~-laaiqlyika~~p~~a~~~a~n~---~~l~~de~il~~ia~alik~elydkagdlfeki~d 676 (1636)
T KOG3616|consen 609 AEL----KE----SDGDG-LAAIQLYIKAGKPAKAARAALND---EELLADEEILEHIAAALIKGELYDKAGDLFEKIHD 676 (1636)
T ss_pred hhh----cc----ccCcc-HHHHHHHHHcCCchHHHHhhcCH---HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC
Confidence 221 11 12222 34678899999988887654221 12345666777777777777778888888887764
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 361 QGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAY-NAIIDGLCKKGRVQEAYELLKKAFQRELQADKIT 439 (675)
Q Consensus 361 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 439 (675)
| ...+.+|-+..-+.+|.++-+-.- +..+++. .....-+...|+++.|...|-+...
T Consensus 677 ----~-----dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 677 ----F-----DKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred ----H-----HHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 1 223444444444666666544321 2222221 2334455566777777766654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 044815 440 YTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR 519 (675)
Q Consensus 440 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 519 (675)
....+.+......+.+|+.+++.+..+. ....-|..+..-|...|+++.|.++|.+. ..++-.|..|.+
T Consensus 735 ~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc
Confidence 1223455566777888888887776653 22334666677778888888888877543 234556777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 520 DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMII 599 (675)
Q Consensus 520 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 599 (675)
.|++++|.++-.+.. |.......|..-..-+-++|++.+|.++|-..-+ |+. .+.+|-+.|..++.+++
T Consensus 804 ~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHH
Confidence 888888887766653 2223344555555556777777777776654422 432 24566677777776666
Q ss_pred HHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 044815 600 LESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLS 667 (675)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 667 (675)
.++--...-..+...+..-|-..|+..+|...|-++ .-|.+.++.|..++-|++|-++.
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 665433223344555666666667776666665443 12334444555556666555544
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.5e-07 Score=90.30 Aligned_cols=445 Identities=16% Similarity=0.103 Sum_probs=251.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044815 161 SSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVT 240 (675)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 240 (675)
.-+...|++++|.+...+++..+ +.+...+..=+-++.+.+++++|+++.+.-... ..+..-+---..+..+.++.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 34567778888888888888776 677778888888889999999999765543321 111111111223445788999
Q ss_pred HHHHHHHHHhHCCCCCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHH
Q 044815 241 EADRWLSAMLDRGAILD-NATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDG-LCKKGWTEKAFRL 318 (675)
Q Consensus 241 ~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 318 (675)
+|+..++ |..++ ..+...-...+.+. +++++|+++|+.+.+.+.+ + +...+.+ +...+- +..+
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl---~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a---~l~~ 161 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRL---ERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA---ALQV 161 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHH---hhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH---hhhH
Confidence 9998888 33333 23444444555665 7899999999999887533 2 2222211 111111 1111
Q ss_pred HHHHHhcCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHhcC
Q 044815 319 FLKLVRSDNYKPNVHTYTAM---ISGYCKEEKMNRAEMLLERMKEQG-------LLPNTN-------TYTSLIYGHCKVG 381 (675)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g 381 (675)
+ .++.....| ..+|..+ ...+...|++.+|+++++.....+ -.-+.. +-.-+...+-..|
T Consensus 162 -~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 -Q-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred -H-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 122222223 2344443 344556899999999998883221 111111 1123445567889
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHhCCC----------CCCHHHH-HHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYA----YNAIIDGLCKKGRVQ-EAYELLKKAFQREL----------QADKITY-TILLS 445 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~~~~~~~----------~~~~~~~-~~li~ 445 (675)
+.++|..++...++.. ++|... -|.|+..-....-++ .++..++....... ....... +.++.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 344432 233332211111111 12222222211100 0000111 11222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF--CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 523 (675)
.| .+.-+.+.++....- +..|. ..+..++..+ ++......|.+++....+....-...+.-.++......|++
T Consensus 318 l~--tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HH--hhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 22 222233333222221 11222 3344444433 23335778888888877765444456677778888999999
Q ss_pred HHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHH
Q 044815 524 SSAVKYFQ--------RMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK--GISPCE----VTRVTLAYEYCK 589 (675)
Q Consensus 524 ~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~----~~~~~l~~~~~~ 589 (675)
+.|++++. .+.+.+..|. +...+...+.+.++-+-|..++.+.+.- .-.+.. .++..++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 5555554554 4455566677777777788888777641 011111 223334444556
Q ss_pred cCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 590 QGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
.|+.++|...++++.+ +++..+...++.+|+.. +.+.|..+-+++
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7999999999999877 46777888888888876 677777665543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.3e-09 Score=95.50 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALIS 550 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 550 (675)
..+...|.-.|.+.|+...|.+-+++.++... .+..+|..+...|.+.|..+.|.+.|++.... .| +....|....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhH
Confidence 34567778889999999999999999998753 35678888889999999999999999998874 45 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
-+|..|++++|...|++.+..-.-|. ..++..++.+-.+.|+.+.|...|++... +........+.....+.|++..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 88999999999999999987522221 35777888888899999999999998665 2345667788888999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
|..++++....+. ++...+-..+.+-...|+.+-|.++=..+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999888877 58888888888888899988777664443
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.2e-09 Score=100.07 Aligned_cols=228 Identities=13% Similarity=0.113 Sum_probs=176.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITY-TILLSEHLK 449 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~ 449 (675)
+-+..+|.+.|.+.+|.+.++...+. .|-+.||-.|.+.|.+..+.+.|+.++.+-.+. .|-.+|| .-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56778888888888888888877766 567778888888888888888888888887764 3444444 456677788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY 529 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (675)
.++.++|.++++...+.. +.++.....+...|.-.++++.|..+++++.+.|+ -+...|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888888888888764 44566666677777778889999999999998887 4788888888888888889988888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 530 FQRMNQIGCAPD--NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 530 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
|++....--.|+ ...|-.+.......|++.-|.+.|+-.+..+-. ....++.|+-.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888776443454 346777777778889999999998888774322 246778888888889999999988887654
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.6e-11 Score=82.55 Aligned_cols=49 Identities=47% Similarity=0.891 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC 378 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 378 (675)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.3e-08 Score=99.47 Aligned_cols=218 Identities=11% Similarity=-0.049 Sum_probs=150.3
Q ss_pred hcCCHHHHHHHHHHHhhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 379 KVGNFERAYDLMDLMGKEG-CTPN--IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
..+..+.++.-+.++.... ..|+ ...|..+...|.+.|+.++|...|++.++.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466777888888877532 1222 4567778888889999999999999988864 3567888899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|...|++..+.. +-+..++..+..++...|++++|.+.|+...+.. |+..............++.++|...+++...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999988764 3356778888888888999999999999988864 4332222222233456788999999976554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK---G--ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
. ..|+...+ .......|+..++ +.++.+.+. . +.| ....|..++..|.+.|++++|...|++...
T Consensus 194 ~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 194 K-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred h-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 23332222 2223345555544 344544421 1 112 125678889999999999999999998765
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.4e-06 Score=88.10 Aligned_cols=310 Identities=15% Similarity=0.205 Sum_probs=170.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN-YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+.....-+.++...+-..+-++++++++-... +.-+...-|.|+-...+. +...+.++.+++...+. |+ +.
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia 1055 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IA 1055 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HH
Confidence 33344445555555555565665555543221 111122223333222222 23334444444433211 11 12
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
......+-+++|..+|++.. .+....+.|+.- -+..+.|.+.-++. ..+..|+.+..+-.+.|.+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchH
Confidence 23334455666666666543 234444444432 34555555554442 34567888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
+|++-|-+. .|+..|..++....+.|.+++-.+++..+.+..-.|.+. +.||-+|++.++..+..+++
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh----
Confidence 887665332 266778888888888888888888887666655444433 46777888888776655443
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhh---
Q 044815 535 QIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRT--- 611 (675)
Q Consensus 535 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 611 (675)
.-||......+.+-|...|.++.|.-+|.... .+..|+..+...|+++.|...-++.. +..+
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~ 1254 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN---STKTWKE 1254 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHH
Confidence 23777777777777888888877777666542 33445555566666665554443332 2222
Q ss_pred ---------------------------HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 612 ---------------------------VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 612 ---------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..-++..|-..|-++|-+.+++..+...-. ....|.-|+-.|.
T Consensus 1255 VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-HMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-HMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHH
Confidence 344566666666666666666665443322 3344444544443
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=6.7e-07 Score=94.16 Aligned_cols=545 Identities=14% Similarity=0.054 Sum_probs=292.9
Q ss_pred hhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHH--------------HHHHHHhcCChHHHHHHHHH
Q 044815 113 SMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQC--------------MVSSFAEIGRLKEGFSMVIE 178 (675)
Q Consensus 113 ~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~--------------li~~~~~~g~~~~A~~~~~~ 178 (675)
...|+..|-.+.+. -......|..+|..+...-+...|..-|+. ..+.|++...++.|..+.-.
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44556655544433 233455677777777665555556555553 46688888999998888444
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCC
Q 044815 179 MTNNGLPLI--TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAIL 256 (675)
Q Consensus 179 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 256 (675)
.-+.. +-. ...|..+.-.|.+.++...|+.-|+...+.. +.|...|..+..+|...|++..|.++|.+..... |
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 33322 111 1233334445677888888998888887653 4578889999999999999999999998887653 3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 044815 257 DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG------WKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS----- 325 (675)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 325 (675)
+ .+|.....+-... +.|.+.++...+..+.... ...-..++-.+...+.-.|-..+|...+++.++.
T Consensus 628 ~-s~y~~fk~A~~ec-d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMEC-DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred H-hHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3 2333332222221 1378999998888776431 1112233333334444444444444444433221
Q ss_pred -CCCCCCHHHHHHHHHHHH---hcC--ChH-HHHHHH-HHHHHcCCCC--------------------CHHHHHHHHHHH
Q 044815 326 -DNYKPNVHTYTAMISGYC---KEE--KMN-RAEMLL-ERMKEQGLLP--------------------NTNTYTSLIYGH 377 (675)
Q Consensus 326 -~~~~~~~~~~~~li~~~~---~~~--~~~-~A~~~~-~~m~~~g~~p--------------------~~~~~~~li~~~ 377 (675)
.....+...|-.+..++. ... .+. ....+| .+....+..| +..+|..|+..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 001122222222222211 100 000 000111 1111111111 122333333333
Q ss_pred Hh--------cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 378 CK--------VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK 449 (675)
Q Consensus 378 ~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 449 (675)
.+ ..+...|...+.+.++.. ..+..+|+.|.-. ...|.+.-|.-.|-+.... .+....+|..+.-.+.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence 32 112235666666665542 3345555555444 5556666666666554433 23455667777777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HH--CCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA--IT--AGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
..+++.|...|....... +.+...|..........|+.-++..+|..- .. .|-.+...-|-........+|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 888888888888777653 334555544444445667777777777652 21 2233444444444444455666544
Q ss_pred HHHHH----------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCCHHHHHHHHHHHHHc
Q 044815 526 AVKYF----------QRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIG---KG--ISPCEVTRVTLAYEYCKQ 590 (675)
Q Consensus 526 A~~~~----------~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g--~~p~~~~~~~l~~~~~~~ 590 (675)
-+... ++... +.+.+...|...+...-+.+.+..|.+...+++. .. ...+.+.-..++..++..
T Consensus 942 ~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 33322 22222 2233456777777777777778877777776552 11 111122223456667777
Q ss_pred CCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCC-CCCC-HHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 591 GDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKD-QNVD-RVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 591 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
|.++.|...+......-+..+..+-+ ++.-.|+++++.+.|++++..- .+-| .+....++...+..+..+.|...+=
T Consensus 1021 gefe~A~~a~~~~~~evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLf 1099 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLF 1099 (1238)
T ss_pred cchhhHhhhhcccchhHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHH
Confidence 88777666555433222221211111 1244678888888888887652 2223 2455667777778888888877765
Q ss_pred HHH
Q 044815 669 RIA 671 (675)
Q Consensus 669 ~~~ 671 (675)
++.
T Consensus 1100 e~~ 1102 (1238)
T KOG1127|consen 1100 EVK 1102 (1238)
T ss_pred HHH
Confidence 554
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.7e-11 Score=80.84 Aligned_cols=50 Identities=30% Similarity=0.640 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 221 ADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.5e-07 Score=92.79 Aligned_cols=378 Identities=17% Similarity=0.111 Sum_probs=210.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPN-VHTYTAMISGYCKEEKMNRAEM 353 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~ 353 (675)
|+++.|+..|-+.+..... |.+.|..-..+|.+.|++++|++--.+..+ ..|+ ...|+-...++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 8999999999999887544 888999999999999999999876555544 4466 4578999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHhhc---CCCCCHHHHHHHHHHHH----------hcCC
Q 044815 354 LLERMKEQGLLPNTNTYTSLIYGHCKVGNFERA---YDLMDLMGKE---GCTPNIYAYNAIIDGLC----------KKGR 417 (675)
Q Consensus 354 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~---g~~~~~~~~~~li~~~~----------~~g~ 417 (675)
-|.+-++.. +.|...++.+..++......... -.++...... ........|..++..+- ...+
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 999988853 23677788888777211100000 0011111100 00001112222222221 1111
Q ss_pred HHHHHHHHHHH-----HhC-------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 418 VQEAYELLKKA-----FQR-------ELQA------------D----------KITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 418 ~~~A~~~~~~~-----~~~-------~~~~------------~----------~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
+..|...+... ... +..| | ..-...+.++..+..+++.|++-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222211110 000 0111 0 012445666777777888888888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH-------HHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 464 VKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS-------MICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
.+.. .++.-++....+|...|.+.+....-...++.|.. ...-|+. +..+|.+.++++.|+.+|++....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7764 45556677777788888877777777666665431 2222222 334566667788888888876654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 537 GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 537 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
-..|+.. .+....+++....+...- +.|.. .-...-+..+.+.|++..|.+.|.++.+ +.+...|.
T Consensus 328 ~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs 396 (539)
T KOG0548|consen 328 HRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS 396 (539)
T ss_pred hcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence 3333322 122222333333333222 22222 1112224455555666666665555443 23445555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...-+|.+.|.+.+|+.-.+..++.+|+ ....|..=+.++....+|++|.+.+++.++
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555666666666655555555554 445555555555555566666655555543
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.3e-07 Score=90.43 Aligned_cols=402 Identities=16% Similarity=0.133 Sum_probs=264.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh
Q 044815 230 VVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN-VYTHTVLIDGLCK 308 (675)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 308 (675)
..+.+..|+++.|..+|-+.+..... |.+.|..-..++.+. |++++|++--.+-++. .|+ ...|+....++.-
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~---~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASL---GSYEKALKDATKTRRL--NPDWAKGYSRKGAALFG 82 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHH---hhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHh
Confidence 34677899999999999999887544 888999999999997 7899998877776665 444 4679999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHhc--
Q 044815 309 KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAE---MLLERMKEQ---GLLPNTNTYTSLIYGHCKV-- 380 (675)
Q Consensus 309 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~---~~~~~m~~~---g~~p~~~~~~~li~~~~~~-- 380 (675)
.|++++|+.-|.+-++.. +.+...++.+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 83 lg~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999999988754 345666777777762110000000 011111100 0000112233333322111
Q ss_pred --------CCHHHHHHHHHHH-----hhcC-------CCC----------------------CHHHHHHHHHHHHhcCCH
Q 044815 381 --------GNFERAYDLMDLM-----GKEG-------CTP----------------------NIYAYNAIIDGLCKKGRV 418 (675)
Q Consensus 381 --------g~~~~A~~~~~~m-----~~~g-------~~~----------------------~~~~~~~li~~~~~~g~~ 418 (675)
..+..|.-.+... ...| ..| -..-...+.++..+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111121111110 0000 011 011235677778888899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHH
Q 044815 419 QEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTT-------LIAAFCRQKKMKES 491 (675)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~A 491 (675)
+.|.+-+...++.. -+..-++....++...|.+.++...-...++.|.. ...-|+. +..++.+.++++.|
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 99999999988754 55556677778899999998888888777776532 2222333 44466677889999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..+|.+.......|+. ..+....+++.+..+...- +.|... -...-...+.+.|++..|+..|.+++.
T Consensus 318 i~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 9999997765433322 2344455666666665544 234432 223336678899999999999999998
Q ss_pred CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 571 KGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 571 ~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
.. |+ ...|...+.+|.+.|.+..|++-.+...+ ++++..|.--+.++....+++.|.+.|++.++.+|. +....
T Consensus 387 r~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~ 463 (539)
T KOG0548|consen 387 RD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAI 463 (539)
T ss_pred cC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHH
Confidence 54 54 56677789999999999999988777554 345666777777777888999999999999999987 77666
Q ss_pred HHHHHHHHh
Q 044815 648 AALKNACYE 656 (675)
Q Consensus 648 ~~l~~~~~~ 656 (675)
..+..+...
T Consensus 464 ~~~~rc~~a 472 (539)
T KOG0548|consen 464 DGYRRCVEA 472 (539)
T ss_pred HHHHHHHHH
Confidence 666666554
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=4.3e-08 Score=86.07 Aligned_cols=200 Identities=15% Similarity=0.046 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044815 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGY 517 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 517 (675)
.+...|.-.|...|+...|..-+++.++.+ +.+..++..+...|-+.|..+.|.+.|++++.... -+..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 356677788999999999999999999985 44677889999999999999999999999998754 4677889999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 044815 518 LRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 595 (675)
|..|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...|++.++. .|+ ..+...+.....+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988742212 2458888888888999999999999999984 443 3566778889999999999
Q ss_pred HHHHHHHHhhCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 596 AMIILESLDKKL--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 596 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
|..+++...... ...+.-.-|+.-...|+.+.|-++=.++...-|.
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999987753 3444555566666789999888877777666654
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=4.3e-06 Score=86.29 Aligned_cols=210 Identities=19% Similarity=0.127 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNN-G-------LPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS 224 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 224 (675)
..+|+.|.+-+.+..+.+-|.-.+..|... | ...+...-..+.-.....|..++|+.+|.+...
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 346777777777777777776665555321 0 111112222233344578889999999888764
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----------HHcCC--
Q 044815 225 SYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEM----------VRKGW-- 292 (675)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~----------~~~~~-- 292 (675)
|..|=..|-..|.+++|.++-+.--+- . =..||.....-+-.. ++++.|++.|++. ....+
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear---~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEAR---RDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhh---ccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 344556777789999998887653322 2 123444444333333 6788888777752 22111
Q ss_pred -------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044815 293 -------KPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365 (675)
Q Consensus 293 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 365 (675)
..|...|.-....+-..|+++.|+.+|.... .|..++...|-.|+.++|-++-++-.
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa~iA~esg------ 965 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAARIAEESG------ 965 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHHHHHHhcc------
Confidence 1234445555555666788888887776542 24555555666666666666554421
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 366 NTNTYTSLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (675)
|......|...|...|++.+|..+|-+.
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344444555666666666666655443
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3.3e-07 Score=83.26 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=145.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHc
Q 044815 158 CMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLM-VVAYCRM 236 (675)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~ 236 (675)
..+..+.+..++++|++++....+.. +.+....+.|.-+|....++..|...++++... .|...-|... ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34445667778888888888877765 447788899999999999999999999999875 4666666543 4688899
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 044815 237 GRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAF 316 (675)
Q Consensus 237 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 316 (675)
+.+.+|+.+...|.+. ++...-..-+.+..+-. .+++..+..+.++....| +..+.+...-...+.|+++.|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYs-e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYS-EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcc-cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 9999999999988763 22222222233333322 267888888888766432 5556666666778999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044815 317 RLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLL 364 (675)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 364 (675)
+-|+...+-+|+.|- ..||..+. ..+.|+++.|++...+++++|+.
T Consensus 165 qkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 999999998988774 46776554 45679999999999999998764
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=7.9e-07 Score=82.51 Aligned_cols=323 Identities=15% Similarity=0.102 Sum_probs=207.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HH
Q 044815 294 PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTY-TS 372 (675)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ 372 (675)
.++.-...+...+...|++.+|+.-|...++.+ +.+-.++.--...|...|+..-|+.-+.+.++ .+||-..- .-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH
Confidence 345556667778888888888888887776522 22333444445667778888888888887776 46664321 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044815 373 LIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE 452 (675)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 452 (675)
-...+.+.|.+++|..-|+...+.. |+..+ ...++.+.-..++-..+.+ .+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l~~----------------ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVLVQ----------------QLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHHHH----------------HHHHHhcCCc
Confidence 2334567788888888888877763 33221 2223333222222222222 2344566789
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+..- .+....-.+-..+...|+.+.++..+++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999998864 56778888888999999999999888877776532 4566666677778888999999999888
Q ss_pred HHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHH
Q 044815 533 MNQIGCAPDNIT----YGAL---------ISGLCKQSKLDEACQFYESMIGKGISPCEV---TRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 533 m~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A 596 (675)
..+ +.||... |-.+ +......++|-++.+-.+..++........ .+..+..+|...|++.+|
T Consensus 249 CLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 887 4677653 2111 112345566777777777777643221112 223344556667777777
Q ss_pred HHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 597 MIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 597 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
++...++.. +.+..++.--..+|.-...+|.|+.-|+++.+.++. |...
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s-n~~~ 377 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES-NTRA 377 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc-cHHH
Confidence 777777655 234666666777777777788888888887777766 4433
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=1.6e-06 Score=80.47 Aligned_cols=308 Identities=13% Similarity=0.125 Sum_probs=217.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Q 044815 262 TLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTY-TAMIS 340 (675)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~li~ 340 (675)
--+-..+... |++..|+.-|...++.+.. +-.++-.-...|...|+..-|+.-+.+.++ .+||-..- -.-..
T Consensus 42 lElGk~lla~---~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 42 LELGKELLAR---GQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhch
Confidence 3344555554 7899999999888875211 223344446678899999999998888876 45875432 23456
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 420 (675)
.+.+.|.+++|..-|+..++.. |+..+ ...++.+.-..+ ++ ......+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~-------e~---------~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQ-------EH---------WVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHH-------HH---------HHHHHHHHHHhcCCchhh
Confidence 6789999999999999998863 32211 122222221111 11 122334555667899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 421 AYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 421 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
|+.....+++. .+-|...|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.+....++.++
T Consensus 174 ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 99999999885 35577778888899999999999998888777654 44566666777888899999999999999998
Q ss_pred CCCCCCHhH----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH---HHHHHHHHHhcCCHHHHH
Q 044815 501 AGLFPTKET----YTSM---------ICGYLRDGNISSAVKYFQRMNQIGCAPD--NIT---YGALISGLCKQSKLDEAC 562 (675)
Q Consensus 501 ~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~---~~~l~~~~~~~g~~~~A~ 562 (675)
.+ |+... |..| +....+.+++.++++-.+...+.. |. .+. +..+-.++...|++.+|+
T Consensus 252 ld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 LD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred cC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHH
Confidence 54 55432 2222 122345678888888888877743 44 233 344556778889999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 563 QFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 563 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+...+.++ +.|+ ..++..-+.+|.-...+++|+.-|+....
T Consensus 328 qqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 328 QQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99999998 6776 56667788899999999999999998876
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=8e-07 Score=102.56 Aligned_cols=367 Identities=11% Similarity=0.020 Sum_probs=225.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 299 HTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT----YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 299 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+......+...|++.+|....... ++... ...........|+++.+...++.+.......+........
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a-------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAA-------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 344455567778877776654332 12111 1112233445677777777766652211111222223344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGC------TPN--IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK----ITYTI 442 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 442 (675)
..+...|++++|...+....+.-- .+. ......+...+...|++++|...+++..+.....+. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 455677899999988887654210 111 112223344566789999999999988763222222 24456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHhHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGL---NP--DIHAYTTLIAAFCRQKKMKESEKFFQEAITA----GLF--P-TKETY 510 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~ 510 (675)
+...+...|++++|...+++.....- .+ ...++..+...+...|++++|...+++..+. +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 66677889999999999888764311 11 1234556677788899999999998877652 211 1 12334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH--H-H-
Q 044815 511 TSMICGYLRDGNISSAVKYFQRMNQI--GCAPD--NITYGALISGLCKQSKLDEACQFYESMIGK--GISPCEV--T-R- 580 (675)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~--~-~- 580 (675)
..+...+...|++++|...+++.... ...+. ...+..+.......|++++|.+.++++... ....... . .
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 55566677789999999998887542 11122 234445666778899999999998887542 1111110 1 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCh------hhHHHHHHHHHccCCHHHHHHHHHHHhcC----CCCC-CHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKKLWI------RTVNTLIRKLCSEKRVGMAALFFHKLLGK----DQNV-DRVSLAA 649 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~ 649 (675)
...+..+...|+.+.|..++......... ..+..+..++...|++++|...+++++.. +..+ ...++..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 11224455688999999988775542111 11346777788899999999999988764 2221 1346777
Q ss_pred HHHHHHhcCchhHHHHHHHHHHh
Q 044815 650 LKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 650 l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++.++...|+.++|.+.+.++++
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999998876
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=1.1e-06 Score=89.47 Aligned_cols=196 Identities=10% Similarity=0.022 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHH
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC-APDN--ITYGALISGL 552 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~ 552 (675)
..+...+...|++++|...+++..+... .+...+..+...+...|++++|..++++..+..- .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3444455566666666666666665432 2344555556666666666666666666554211 1221 1233455556
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH--H-HHHHHHHHcCCHHHHHHH--H-HHHhhC-CC-hhhH--HHHHHHHHc
Q 044815 553 CKQSKLDEACQFYESMIGKGI-SPCEVTR--V-TLAYEYCKQGDSATAMII--L-ESLDKK-LW-IRTV--NTLIRKLCS 621 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~-~p~~~~~--~-~l~~~~~~~g~~~~A~~~--~-~~~~~~-~~-~~~~--~~l~~~~~~ 621 (675)
...|++++|..+++++..... .+..... . .+...+...|..+.+.++ + ...... ++ ...+ ...+.++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666543211 1111111 1 223333334433222222 1 111111 11 1111 245556667
Q ss_pred cCCHHHHHHHHHHHhcCCCC--------CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 622 EKRVGMAALFFHKLLGKDQN--------VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|+.++|...++.+...... .........+.++...|++++|.+.+..+++
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777766542211 0223344556667888888888888888765
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=5.1e-06 Score=84.63 Aligned_cols=193 Identities=20% Similarity=0.131 Sum_probs=111.4
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCC
Q 044815 197 IACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGS 276 (675)
Q Consensus 197 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 276 (675)
.+...|+++.|...|-+... ..-.|.+......|.+|+.+++.+..+.. -..-|..+...|... |+
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~---~d 780 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANK---GD 780 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccc---hh
Confidence 44556666666666544321 12234566667788888888887766532 233455555666665 67
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 044815 277 IKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLE 356 (675)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 356 (675)
++.|.++|.+. ..++..|.+|.+.|++++|.++-.+.+ |.......|-+-..-+-+.|++.+|.++|-
T Consensus 781 fe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 781 FEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 88888777653 234566778888888888887765553 333445556665566666777777777664
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 357 RMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 357 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
.... |+. .|.+|-+.|..+..+++..+-.- ..-..|...+..-|-..|+...|...|-+
T Consensus 849 ti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 849 TIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred EccC----chH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 4322 332 34556666666655555443221 11123444455555556666666555543
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.07 E-value=2.2e-05 Score=83.22 Aligned_cols=539 Identities=11% Similarity=-0.019 Sum_probs=304.4
Q ss_pred ChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHH----------------HHHHHhcCChHHHHHH
Q 044815 112 GSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCM----------------VSSFAEIGRLKEGFSM 175 (675)
Q Consensus 112 ~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~l----------------i~~~~~~g~~~~A~~~ 175 (675)
+...|...|+.+..-. ..........+..+.+..+++.|....-.. --.|.+.++...|+.-
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 3445677776665432 123344456677888888888887663211 1146788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhHCC-
Q 044815 176 VIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS-SYKLMVVAYCRMGRVTEADRWLSAMLDRG- 253 (675)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 253 (675)
|+...+.. |.|...|..+..+|.+.|.+..|.++|++..... |+.. .---.....|..|++.+|+..+.......
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99998876 6788999999999999999999999999988753 3322 22222335678899999999888775431
Q ss_pred -----CCCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----------------
Q 044815 254 -----AILDNATLTLLITAFCDKGF----RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLC----------------- 307 (675)
Q Consensus 254 -----~~~~~~~~~~ll~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------- 307 (675)
..--..++..+...+...|. ..-++.+++.|.-........+...|-.+.+++.
T Consensus 662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~i 741 (1238)
T KOG1127|consen 662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLII 741 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHH
Confidence 11111222222222222211 0122333333333322221112222222222211
Q ss_pred ------hcCCH---H---HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH
Q 044815 308 ------KKGWT---E---KAFRLFLKLVRSDNYKPNVHTYTAMISGYCK--------EEKMNRAEMLLERMKEQGLLPNT 367 (675)
Q Consensus 308 ------~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~ 367 (675)
..+.. | -+.+.+-.-++ ...+..+|..++..|.+ ..+...|+..+.+.++.. ..+.
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~ 817 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNE 817 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccH
Confidence 11111 0 00011100000 11223445555544443 123346777787777642 2366
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.+|+.|.-. ...|.+.-|...|-+-.... +....+|..+.-.+.+..+++.|...|....... +.|...|-......
T Consensus 818 ~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~ 894 (1238)
T KOG1127|consen 818 GLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIP 894 (1238)
T ss_pred HHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhH
Confidence 677766544 66678887777776655543 5567888888888999999999999999887653 45666776666666
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----------HHHHHCCCCCCHhHHHHH
Q 044815 448 LKQAETKQALGLFCRMVK----AGLNPDIHAYTTLIAAFCRQKKMKESEKFF----------QEAITAGLFPTKETYTSM 513 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~----------~~~~~~~~~~~~~~~~~l 513 (675)
...|+.-++..+|..--+ .|-.++..-+..........|+.++-...- +..... .+-....|...
T Consensus 895 eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 895 EAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAAN 973 (1238)
T ss_pred HHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHH
Confidence 778888888888866221 222344433333333444555554433332 233332 33345677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQI-GCAPDNITYGA----LISGLCKQSKLDEACQFYESMIGKGISPCEVTR--VTLAYE 586 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~--~~l~~~ 586 (675)
....-..+.+.+|..+..+.... ..+-|...|+. +.+.++..|.++.|..-+. ..|-.+.- ...-.+
T Consensus 974 gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~------~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 974 GSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW------KEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc------ccchhHHHHHhhhhHH
Confidence 77777777888877777665421 01234445553 3334555666665444332 22211111 111112
Q ss_pred HHHcCCHHHHHHHHHHHhh----CCC-hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchh
Q 044815 587 YCKQGDSATAMIILESLDK----KLW-IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYA 661 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 661 (675)
..-.|+++++.+.|+++.. ..+ +.....++......+.-+.|...+-+....-+. +......|.-.+.-..+-.
T Consensus 1048 lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~-~~~sll~L~A~~ild~da~ 1126 (1238)
T KOG1127|consen 1048 LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKV-QASSLLPLPAVYILDADAH 1126 (1238)
T ss_pred HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCcc-chhhHHHHHHHHHHhhhhh
Confidence 2557888889998888654 122 334566677777788888888877777666443 5665555555554444444
Q ss_pred HHHHHHHHH
Q 044815 662 LFSDLSQRI 670 (675)
Q Consensus 662 ~A~~~~~~~ 670 (675)
....+.+++
T Consensus 1127 ~ssaileel 1135 (1238)
T KOG1127|consen 1127 GSSAILEEL 1135 (1238)
T ss_pred hhHHHHHHH
Confidence 444444443
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=2.7e-06 Score=86.63 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVH-TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
..|..+...+...|+.+++.+.+.+..+......+.. ........+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455555555566666666555555444332222211 11112223345566666666666665531 112223221 11
Q ss_pred HHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 376 GHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 376 ~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
.+.. .+..+.+.+.++.... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 1211 2333333333332111 111122233344445555666666666666655542 223344455555555555
Q ss_pred CHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGL-NPDI--HAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
++++|...+++...... .++. ..|..+...+...|++++|..+++++.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55555555555544321 1111 123344444555555555555555543
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.6e-06 Score=78.96 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=169.4
Q ss_pred HHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHH--------------HHHHHhcCCh
Q 044815 104 VASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCM--------------VSSFAEIGRL 169 (675)
Q Consensus 104 ~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~l--------------i~~~~~~g~~ 169 (675)
+-.+.++.+...|.+....-..+. +.+......++..+.....|..|.+-|+++ .+++.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 333444455556665554332221 223344556777778888888888888765 4478889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 170 KEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAM 249 (675)
Q Consensus 170 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 249 (675)
.+|+.+...|.+.. ..-..+...-.......+++..+..+.++....| +..+.+...-...+.|++++|.+-|+..
T Consensus 95 ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 95 ADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHH
Confidence 99999998886641 1111222222223445788888999988887433 4555555566677899999999999998
Q ss_pred hHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChh----------------------------hHHH
Q 044815 250 LDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVY----------------------------THTV 301 (675)
Q Consensus 250 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~ 301 (675)
.+.+.--....|+..+..|.+ ++++.|++...+++++|++..+. .+|.
T Consensus 171 lqvsGyqpllAYniALaHy~~----~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHYSS----RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HhhcCCCchhHHHHHHHHHhh----hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 877655567889998888877 68999999999999887632111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 381 (675)
-...+.+.|+++.|.+.+..|..+.....|.+|...+.-.- ..+++.+..+-+.-+++... -...||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 22234456666666666655544333344555554432211 12334443443444444322 23456666666677766
Q ss_pred CHHHHHHHHHH
Q 044815 382 NFERAYDLMDL 392 (675)
Q Consensus 382 ~~~~A~~~~~~ 392 (675)
-++-|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66666666544
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3e-06 Score=87.46 Aligned_cols=363 Identities=16% Similarity=0.165 Sum_probs=186.2
Q ss_pred CHHHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------
Q 044815 257 DNATLTLLITA--FCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN------- 327 (675)
Q Consensus 257 ~~~~~~~ll~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------- 327 (675)
|..|-..+++- |.. .|+.+.|.+-.+-+. +..+|..+.+++.+..+++-|.-.+..|....|
T Consensus 725 d~~TRkaml~FSfyvt---iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVT---IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEE---eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 45555555432 222 267777776666554 335677777777777776666555444422111
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHH
Q 044815 328 -YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYN 406 (675)
Q Consensus 328 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 406 (675)
-.++ .+-.-........|.+++|..+|++.+. |..|=..|-..|.+++|.++-+.-.+..+ ..||.
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy 862 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYY 862 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHH
Confidence 1121 1111112223356777888888877665 23344556667788888776654333221 23555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----------hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAF----------QREL---------QADKITYTILLSEHLKQAETKQALGLFCRMVKAG 467 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~----------~~~~---------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 467 (675)
....-+-..++.+.|++.|++.- ...+ ..|...|.--...+...|+.+.|+.+|.....
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 55666666777777777776531 1110 11233333344444555666666666655443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044815 468 LNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGA 547 (675)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 547 (675)
|-.++...|-.|+.++|-++-++- -|....-.|.+.|-..|++.+|..+|.+.+. +..
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsn 998 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSN 998 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 334455555566666666554432 2334444566667777777777777766542 222
Q ss_pred HHHHHHh---------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------H
Q 044815 548 LISGLCK---------------QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES---------L 603 (675)
Q Consensus 548 l~~~~~~---------------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---------~ 603 (675)
.|+.|-. ..+.-.|.++|++. |. -....+..|-+.|.+.+|+++--+ +
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 2222111 11222233333322 11 111123456666766666653221 1
Q ss_pred hh----CCChhhHHHHHHHHHccCCHHHHHHHHHHHh--------------------------cCCCCCCHH----HHHH
Q 044815 604 DK----KLWIRTVNTLIRKLCSEKRVGMAALFFHKLL--------------------------GKDQNVDRV----SLAA 649 (675)
Q Consensus 604 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------~~~~~p~~~----~~~~ 649 (675)
.+ ..|+...+.-.+.++...++++|..++-.+. .++-.|+.. .+..
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 11 1244444444444555555555554433221 122233433 5677
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhc
Q 044815 650 LKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 650 l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
++..|.++|.|..|-+-|..+-.+
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhH
Confidence 889999999998888777665443
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=9.1e-06 Score=93.92 Aligned_cols=386 Identities=11% Similarity=0.016 Sum_probs=196.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 044815 148 NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK 227 (675)
Q Consensus 148 ~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 227 (675)
..++...+.......+...|++.+|........... .-..............|+++.+..+++.+.......++....
T Consensus 336 ~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~ 413 (903)
T PRK04841 336 LAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVL 413 (903)
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHH
Confidence 344555666666777777888877766544431110 001112222334455677777777776653211111222233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhHCCC------CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC----hh
Q 044815 228 LMVVAYCRMGRVTEADRWLSAMLDRGA------ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN----VY 297 (675)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 297 (675)
.....+...|++++|..++......-. .+....-...+.+..... .|++++|...+++....-...+ ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN-DGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344555677888888888777644210 011111111111111111 2678888887777655311111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-C
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDN----YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ----GLL--P-N 366 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~ 366 (675)
..+.+...+...|++++|...+.+...... ......++..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345555666777888888777776653211 0111233445556666778888887777765542 211 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH-
Q 044815 367 TNTYTSLIYGHCKVGNFERAYDLMDLMGKEG--CTP--NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA-DKITY- 440 (675)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~- 440 (675)
...+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+++........ ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2233444555666678877777777654321 111 13334445566667777777777776664321000 00000
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHh
Q 044815 441 ----TILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITA----GLFP-TKE 508 (675)
Q Consensus 441 ----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 508 (675)
...+..+...|+.+.|...+........... ...+..+..++...|+.++|...++++... |... ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 0112333446677777666655433211111 011234555566667777777777666542 1111 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
+...+..++.+.|+.++|...+.+..+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555666777777777777766653
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=3.5e-08 Score=94.87 Aligned_cols=252 Identities=14% Similarity=0.080 Sum_probs=146.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
+-+.-.|.+..++.-.+ .....-..+......+.+++...|+++.++.- +... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---IKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---hccC-CChhHHHHHHHHHHHhCccchH
Confidence 34455688888876555 22221122344455677888888887755433 2222 3566666655555554445555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNP-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRM 533 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (675)
.++.-+++.......+ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443332222 2222233334555678888888777542 35666777778888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--C
Q 044815 534 NQIGCAPDNITYGALISGLC----KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--L 607 (675)
Q Consensus 534 ~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 607 (675)
.+. ..|.. ...+..++. -.+.+++|..+|+++.+. ..++..+.+.++.+....|++++|.+++++.... .
T Consensus 158 ~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 763 34433 333444332 234678888888887654 3456667777777788888888888877775442 3
Q ss_pred ChhhHHHHHHHHHccCCH-HHHHHHHHHHhcCCCC
Q 044815 608 WIRTVNTLIRKLCSEKRV-GMAALFFHKLLGKDQN 641 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~ 641 (675)
++.+...++.+....|+. +.+.+++.++....|.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 455665666666666666 6666777777666654
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.4e-08 Score=98.01 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=122.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 410 DGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (675)
.-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34566777777777777776653 3455667777777777777777777777766654 335666666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM- 568 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 568 (675)
+|.+.++.-+...++ |..+... ...+++.. + ..+.....+....++|-++
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~--------------~---------~s~~~~~~l~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFEN--------------T---------KSFLDSSHLAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhcccc-CccccccC--------------C---------cCCCCHHHHHHHHHHHHHHH
Confidence 777777666654321 0000000 00000000 0 0000111122222233333
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 569 IGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 569 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
...+..+|..+...|+-.|.-.|++++|.+.|+.+.. +.+...||-|+-.++...+.++|+..|.++++..|. -...
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~ 500 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRV 500 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeee
Confidence 2333334444555555555555666666666655433 234555666666666666666666666666666555 3445
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 647 LAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 647 ~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+..|+-.|...|.|++|.+.+=.++
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 5556666666666666666555444
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=7.1e-08 Score=92.78 Aligned_cols=249 Identities=12% Similarity=0.110 Sum_probs=149.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQE 420 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 420 (675)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444678888776555 222211222344556677777888776543 3333333 5666665555554444345555
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 421 AYELLKKAFQRELQ-ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 421 A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 499 (675)
+..-+++....... .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66555554433322 23333333345566778888888877542 356667777888888888888888888887
Q ss_pred HCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 500 TAGLFPTKETYTSMICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP 575 (675)
Q Consensus 500 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 575 (675)
+.+ +..+...+..++.. .+++.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++++.++.+..
T Consensus 159 ~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 642 23344444444432 23588888888887654 4567788888888888888888888888888764322
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHhh
Q 044815 576 CEVTRVTLAYEYCKQGDS-ATAMIILESLDK 605 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 605 (675)
+..+...++......|+. +.+.+++.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 345666677777777777 566677777765
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=3e-07 Score=91.51 Aligned_cols=216 Identities=17% Similarity=0.211 Sum_probs=145.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4568899999999999999875 5578899999999999999999999999998864 4577788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-----------HHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAA-----------FCRQKKMKESEKFFQEAITA-GLFPTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~-----------~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 523 (675)
|+..++..+....+ |..+..+ +.....+....++|-++... +..+|..+...|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999876422 1111111 01111233344444444432 3335666666666666666677
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 524 SSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
++|+..|+..+. ++|+ ..+||.|...++...+.++|+..|.++++ +.|.- ...+.|+-.|...|.+++|.+.|-
T Consensus 447 draiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 447 DRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777766665 3443 45666666666666666777777777666 55543 233455555555666655555443
Q ss_pred H
Q 044815 602 S 602 (675)
Q Consensus 602 ~ 602 (675)
.
T Consensus 523 ~ 523 (579)
T KOG1125|consen 523 E 523 (579)
T ss_pred H
Confidence 3
No 107
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=3.4e-06 Score=82.40 Aligned_cols=219 Identities=8% Similarity=0.055 Sum_probs=147.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH--
Q 044815 447 HLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK-KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNI-- 523 (675)
Q Consensus 447 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-- 523 (675)
+...++.++|+.+..++++.. +-+..+|+....++...| +++++...++++.+.+. .+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhh
Confidence 334566777777777777653 224445655555666666 56888888888877654 3555676665555566653
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCH----HHH
Q 044815 524 SSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQ---GDS----ATA 596 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~----~~A 596 (675)
++++.+++++.+.. +-|..+|+....++...|+++++++.++++++.+.. +...++.....+.+. |+. +++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 66788888887743 235667888777888888888888888888885543 345555555555544 222 456
Q ss_pred HHHHHHHh-h-CCChhhHHHHHHHHHcc----CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC------------
Q 044815 597 MIILESLD-K-KLWIRTVNTLIRKLCSE----KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN------------ 658 (675)
Q Consensus 597 ~~~~~~~~-~-~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------ 658 (675)
+.+..++. . +.+..+|+.+...+... ++..+|.+++.++++.+++ +...+..|+..|....
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 66664543 3 45778898888888773 4557788898888888877 7888889999987632
Q ss_pred ------chhHHHHHHHHH
Q 044815 659 ------KYALFSDLSQRI 670 (675)
Q Consensus 659 ------~~~~A~~~~~~~ 670 (675)
..++|.++++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 236677777665
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=1e-06 Score=94.73 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=73.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTL 583 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 583 (675)
+...+..|.....+.|++++|..+++...+ +.|| ......++.++.+.+++++|+..+++.++ ..|+. .....+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 455566666666666666666666666655 3454 33444555556666666666666666665 33433 333445
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 584 AYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
+.++.+.|++++|..+|+++..+ .+..++..++..+.+.|+.++|...|+++++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566666666666666665531 23455555666666666666666666666554
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=6e-07 Score=85.25 Aligned_cols=186 Identities=14% Similarity=0.107 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-P-TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN---- 542 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---- 542 (675)
......+..++..+...|++++|...|+++...... | ....+..+..++...|++++|+..++++.+.. |+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 345667777888888888899998888888775421 1 12466777888888888889988888887743 321
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHH
Q 044815 543 ITYGALISGLCKQ--------SKLDEACQFYESMIGKGISPCEVT-RVTLAYEYCKQGDSATAMIILESLDKKLWIRTVN 613 (675)
Q Consensus 543 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 613 (675)
.++..+..++... |++++|.+.++++++. .|+... ...+... +.... .. .....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~-----~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RL-----AGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HH-----HHHHH
Confidence 2445555555544 6788888888888873 444322 1111110 00000 00 00123
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCC-C-CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQN-V-DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.++..+.+.|++++|+..++++++..|+ | ....+..++.++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667788999999999999999988764 2 3578899999999999999999999887653
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=9.8e-06 Score=88.64 Aligned_cols=222 Identities=12% Similarity=0.134 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 044815 331 NVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-----TNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAY 405 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 405 (675)
+...|-..|......++.++|.++.++.+.. +.+. ...|.++++.-..-|.-+...++|+++.+.. -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3455666666677777777777777776653 2111 2345555555555566666677777776642 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAF 482 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 482 (675)
..|...|.+.+.+++|.++|+.|.++ +......|...+..+.++.+-+.|..++.+..+. -|. .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 66777777777777777777777765 3355666777777777777777777777666654 222 23334444455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 044815 483 CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALISGLCKQSKLD 559 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~ 559 (675)
.+.|+.+.++.+|+..+...+ .-...|+.+|+.-.++|+.+.+..+|++....++.|.. ..|...+.-=-..|+-+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 566777777777776665532 34566777777777777777777777777666655542 24444444333344433
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=9.6e-06 Score=88.71 Aligned_cols=232 Identities=12% Similarity=0.094 Sum_probs=180.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNP-----DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKE 508 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (675)
+.....|-..|......++.++|.++.++.... +.+ -...|.++++.-...|.-+...++|+++.+. .-...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 445567888888888899999999999888764 222 2346777777777778889999999999885 23466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHH-HHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC--EVTR-VTLAY 585 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~-~~l~~ 585 (675)
.|..|...|.+.+++++|.++++.|.+. .......|..++..+.++++-+.|..++.++++. -|. +.-+ ...+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 7899999999999999999999999875 3356778999999999999999999999999984 343 3333 44667
Q ss_pred HHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcCchh
Q 044815 586 EYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV--SLAALKNACYESNKYA 661 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 661 (675)
.-.+.|+.+.+..+|+..... .-...|+.+++.-.++|..+.++.+|++++.++..|-.. .|..++..--+.|+-.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 778999999999999997653 356789999999999999999999999999998875543 4555555445556655
Q ss_pred HHHHHHHHHH
Q 044815 662 LFSDLSQRIA 671 (675)
Q Consensus 662 ~A~~~~~~~~ 671 (675)
.+...=.++.
T Consensus 1689 ~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1689 NVEYVKARAK 1698 (1710)
T ss_pred hHHHHHHHHH
Confidence 4444444443
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=1.1e-06 Score=79.82 Aligned_cols=148 Identities=11% Similarity=0.118 Sum_probs=106.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL 558 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 558 (675)
+-.|...|+++......+.+.. |. . .+...++.+++...+++..+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4457788888876554432221 11 0 1223677788888888877643 44677888888888899999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcCC--HHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 559 DEACQFYESMIGKGISPC-EVTRVTLAYE-YCKQGD--SATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 559 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
++|...|++..+ +.|+ ...+..++.+ |...|+ .++|.+++++..+ +.+...+..++..+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998888 4454 4555667776 466676 4888888888766 346777888888888899999999999
Q ss_pred HHHhcCCCC
Q 044815 633 HKLLGKDQN 641 (675)
Q Consensus 633 ~~~~~~~~~ 641 (675)
+++++..+.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 988888775
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=3e-07 Score=78.95 Aligned_cols=122 Identities=13% Similarity=0.014 Sum_probs=100.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..++++..+ +.|+. +..+...+...|++++|...|+.++. +.| +...+..++.++.+.|++++|...|++...
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456677766 34654 55677788999999999999999998 445 456778899999999999999999999876
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 606 --KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 606 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
+.+...+..++.++...|++++|+..|+++++..|. +...+...+.++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 457888999999999999999999999999999998 8888877766554
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=7.4e-07 Score=76.51 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=66.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 493 KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
.++++..+.+ |+ .+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|+++++
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 4455555532 33 34455666667777777777777776632 22455666677777777777777777777776
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 573 ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 573 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.| +...+..++.++.+.|+.++|...|+....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334 345566677777777777777777777544
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.0006 Score=67.94 Aligned_cols=423 Identities=11% Similarity=0.096 Sum_probs=206.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHH
Q 044815 185 PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLL 264 (675)
Q Consensus 185 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 264 (675)
|.|..+|+.|++-+..+ ..+++.+.++++... ++-.+..|..-|..-.+.++++....+|.+.+..-. +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 77889999999877655 999999999999864 455788899999999999999999999999876533 45555555
Q ss_pred HHHHHhcCCCCCHHH----HHHHHHH-HHHcCCCCC-hhhHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCCC-
Q 044815 265 ITAFCDKGFRGSIKQ----AFELLEE-MVRKGWKPN-VYTHTVLIDG---------LCKKGWTEKAFRLFLKLVRSDNY- 328 (675)
Q Consensus 265 l~~~~~~~~~~~~~~----a~~~~~~-~~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~- 328 (675)
|.-..+.. +.... ..+.|+- +.+.|+++- -..|+..+.. |....+++...+++++++...-.
T Consensus 93 l~YVR~~~--~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 93 LSYVRETK--GKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHc--cCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 54443332 22222 2233333 233444332 2234443332 23334555566666666532100
Q ss_pred ----CCCHHHHHHHHHHHH-------hcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHH
Q 044815 329 ----KPNVHTYTAMISGYC-------KEEKMNRAEMLLERMKE--QGLLPNTNTYTSLIYGHCKVGNFER--AYDLMDLM 393 (675)
Q Consensus 329 ----~~~~~~~~~li~~~~-------~~~~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m 393 (675)
-.|-..|..=|+... +...+-.|.++++++.. .|...+..+ .-..|--++ ..+++...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHH
Confidence 001111111111111 11123333333333322 122111111 000000111 11111111
Q ss_pred hh----cCCC-CC--------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------
Q 044815 394 GK----EGCT-PN--------IYAYNAIIDGLCKK-GRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE------- 452 (675)
Q Consensus 394 ~~----~g~~-~~--------~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------- 452 (675)
++ .++. .+ ..+|+..+..+.-+ .-+-++...+... -+.+.+.|+
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~---------------s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI---------------SDLLTEKGDVPDAKSL 308 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------hHHHHHhcccccchhh
Confidence 10 0100 00 00111111000000 0011111111110 011222222
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR---QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY 529 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (675)
.+++..+++..+..-..-+..+|..+..---. ....+.....++++...-..--.-+|..+++.--+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 34555555554443222233333333221111 112444455555555432222234566666666666677777778
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 044815 530 FQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVT-RVTLAYEYCKQGDSATAMIILESLDKKL 607 (675)
Q Consensus 530 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 607 (675)
|.+..+.+..+ +...+++++.-+| .++.+.|.++|+--+++ -+|... ....+.-+...++-..|..+|+++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 87777766555 5556666666555 45667777777766552 123323 3456666677777777777777766541
Q ss_pred -----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 608 -----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 608 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
....|+.++..-..-|+...+.++-++....
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 2456777777777778887777777665544
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=4.4e-06 Score=79.28 Aligned_cols=186 Identities=13% Similarity=0.003 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--h
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK--E 508 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 508 (675)
......+..+...+...|++++|...++++.... +.+ ...+..+..++.+.|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456678888889999999999999999998763 222 246778889999999999999999999986432111 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 509 TYTSMICGYLRD--------GNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVT 579 (675)
Q Consensus 509 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 579 (675)
.+..+..++... |++++|.+.++++.+. .|+.. .+..+... .. ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH--------HHH
Confidence 455566666654 7889999999999874 45532 22222111 00 000 00 011
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
...++..|.+.|++++|+..++++... | ....+..++.++.+.|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235677788999999999999987652 2 245788899999999999999999888766553
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.5e-06 Score=89.00 Aligned_cols=208 Identities=13% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+...+.+.|-...|+.++++.. .|..+|.+|+..|+..+|..+..+..++ .|+...|..+++......-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3344444444444544444432 2333444444445555554444444441 2444444444444443334
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
+++|.++.+..... .-..+.....+.++++++.+.++.-.+ +.| -..+|+.++.+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 44444444432210 111111111224445555555554444 111 12344444444555555555555444
Q ss_pred HHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 602 SLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 602 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.... +++...||.+..+|.+.|+-.+|...++++++-+.. +...|.+..-...+.|.+++|.+++.+++
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 4332 233444555555555555555555555555554433 34444444444455555555555554443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=5.6e-05 Score=77.78 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=151.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGH 377 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 377 (675)
.-..+...+.+.|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 34556677777888888888877652 466677788888888888887777666 356777777777766
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|..+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 6655677777777654322 22223333344678888888887776643 345567777777777888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 458 GLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 458 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
+.|.....-. +.+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8887777642 3346678888888888888888888888888776 35666677777777788888888888877764
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.0013 Score=69.66 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCC-ChhhHHHH-HH
Q 044815 544 TYGALISGLCKQSKLD---EACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKL-WIRTVNTL-IR 617 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l-~~ 617 (675)
+.+.+++.+.+.++.. +|+-+++.-+. ..|... +-..++..|+-.|-+..|.+.|..+..+. ...+...+ .+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHH
Confidence 3466778888888765 45555555544 334333 44668889999999999999999875432 11233333 33
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLS 667 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 667 (675)
.+...|++..|...++..+..--.--..+-.. +...++.|.+.+-.++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~ey-I~~AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEY-IALAYRRGAYSKIPEML 564 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHH-HHHHHHcCchhhhHHHH
Confidence 45568899999988887665422211223332 33346677776665554
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.62 E-value=0.0013 Score=69.58 Aligned_cols=423 Identities=13% Similarity=0.075 Sum_probs=223.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044815 163 FAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEA 242 (675)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 242 (675)
+.+.|+.++|..+++.....+ ..|..|...+-.+|.+.|+.++|..+|++.... -|+......+..+|.+.+.+.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 578899999998888877665 348899999999999999999999999999876 46676667777788888887655
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhcCC-CC------CHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHH
Q 044815 243 DRWLSAMLDRGAILDNATLTLLITAFCDKGF-RG------SIKQAFELLEEMVRKG-WKPNVYTHTVLIDGLCKKGWTEK 314 (675)
Q Consensus 243 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 314 (675)
.+.--+|-+. ..-+...+-.+++.....-. .. -+.-|.+..+.+.+.+ .--+..-...-...+-..|..++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5444444442 22355666666666554311 00 1223455566665543 11122222223345567889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 044815 315 AFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC---------------- 378 (675)
Q Consensus 315 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---------------- 378 (675)
|.+++..-....-..-+...-+.-+..+...+++.+..++-.++...|.. | |...++.++
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 99998433322223334445556677788889999999999998887544 2 333222222
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGL---CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
..+..+...+..++..... ....|-+-+..+ -.-|+.+++...|-+-... .| .|..=+..|...=..++
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~--kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD--KP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC--Cc---HhHhhHHHhhccCCHHH
Confidence 1223333333333333221 112222333333 3457777766555332211 11 11111222222222233
Q ss_pred HHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH---HC------CCCCCHh------
Q 044815 456 ALGLFCRMVKAGLNPDIH-------AYTTLIAAFCRQKK-----MKESEKFFQEAI---TA------GLFPTKE------ 508 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~~~---~~------~~~~~~~------ 508 (675)
...++....... ++.. .+...+..-.-.|. -+.-..++.+.. +. ++.|+..
T Consensus 357 ~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 333333322211 1100 00111111111121 122222222221 11 1222322
Q ss_pred ---HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 044815 509 ---TYTSMICGYLRDGNIS---SAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVT 582 (675)
Q Consensus 509 ---~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 582 (675)
+-+.|++.+-+.++.. +|+-+++...... +.|..+=-.+|+.|+-.|-+..|.++|+.+--+.+.-|...|.
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~- 512 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL- 512 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-
Confidence 2355667777777654 4555555544432 2344455567777888888888888888876555655433322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 044815 583 LAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+...+.-.|++..+...+....+
T Consensus 513 ~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 513 IFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHHHHhcccchhHHHHHHHHHH
Confidence 33344455666666666655433
No 121
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=6.4e-05 Score=73.52 Aligned_cols=220 Identities=8% Similarity=0.059 Sum_probs=139.5
Q ss_pred CChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHH
Q 044815 147 GNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELG-LVEYAEEVFDEMCARGVCADASS 225 (675)
Q Consensus 147 ~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 225 (675)
+.|.++...|..+ +...++.++|+.+..++++.+ |-+..+|+.-..++...| .+++++..++++.+.. +.+..+
T Consensus 34 ~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqa 108 (320)
T PLN02789 34 PEFREAMDYFRAV---YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQI 108 (320)
T ss_pred HHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHH
Confidence 3444455444443 445677888888888888765 455567777777777777 5788999988888764 446677
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 044815 226 YKLMVVAYCRMGRV--TEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLI 303 (675)
Q Consensus 226 ~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (675)
|+.-...+.+.|+. +++..+++++.+.... |...|......+... |+++++++.++++++.++. |..+|+...
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l---~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTL---GGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 87766666666653 6678888888776543 556666666555554 6788888888888876544 566666666
Q ss_pred HHHHhc---CCH----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 304 DGLCKK---GWT----EKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKE----EKMNRAEMLLERMKEQGLLPNTNTYTS 372 (675)
Q Consensus 304 ~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~m~~~g~~p~~~~~~~ 372 (675)
..+.+. |.. +++++...+.+... +-|...|+.+...+... ++..+|...+.+....++ .+......
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~ 260 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSD 260 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHH
Confidence 555444 222 35566655555533 34556676666666552 334556666666555322 24556666
Q ss_pred HHHHHHh
Q 044815 373 LIYGHCK 379 (675)
Q Consensus 373 li~~~~~ 379 (675)
|++.|+.
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 6666664
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.61 E-value=1.4e-05 Score=87.01 Aligned_cols=238 Identities=11% Similarity=0.091 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044815 366 NTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLS 445 (675)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 445 (675)
+...+..|+..|...+++++|.++.+...+.. +-....|..+...+.+.++.+++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 45677888888888999999999998776652 22344444455567777776666554 2 233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
......++.-...+...|... .-+...+..+..+|-+.|+.++|..+|+++++.. .-|..+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333444453344444455543 3345577888889999999999999999999887 35788888888888888 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 526 AVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
|..++.+.... +...+++.++.+++.++.+ ..|+...+ ..+.......-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc-----------
Confidence 99988887653 5556678888888888887 33443222 2222211111001
Q ss_pred hCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 605 KKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 605 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..-..++..+-..|.+.+++++++.+++.+++.++. |.-....++..|.
T Consensus 220 -~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 -TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 112334455556677777888888888888888887 7777777776655
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.9e-05 Score=69.54 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=144.5
Q ss_pred HhcCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 448 LKQAETKQALGLFCRMVKA---G-LNPDIH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+...+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 3456788899888887753 3 444443 45666667778899999999999887763 2222332222333456788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
+++|+++++...+.+ +.|..++-.-+...-..|+.-+|++-+.+.++. +..|...+..+...|...|++++|.=.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999988765 445667776676777788888888888877764 445788899999999999999999988888
Q ss_pred Hhh--CCChhhHHHHHHHHHccC---CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 603 LDK--KLWIRTVNTLIRKLCSEK---RVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 603 ~~~--~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
+.- +.++..+..+...+.-.| +.+-|.++|.++++..+. +...+..+.-.+..
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGIYLCGSA 237 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHHHHHHHH
Confidence 643 335555566666654433 778899999999988875 66666655544443
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=7.9e-08 Score=58.46 Aligned_cols=32 Identities=34% Similarity=0.667 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 218 GVCADASSYKLMVVAYCRMGRVTEADRWLSAM 249 (675)
Q Consensus 218 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 249 (675)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=8.2e-08 Score=58.39 Aligned_cols=29 Identities=41% Similarity=0.796 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 364 LPNTNTYTSLIYGHCKVGNFERAYDLMDL 392 (675)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (675)
.||..||++||.+||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.57 E-value=0.0012 Score=66.02 Aligned_cols=426 Identities=14% Similarity=0.110 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhH
Q 044815 220 CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTH 299 (675)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 299 (675)
+-|..+|+.||+-+-.+ .++++.+.++++... ..-....|...|..-.+. ++++.+.++|.+-...- .+...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~s---kdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELAS---KDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHH--hhHhHH
Confidence 56899999999976555 999999999999875 333566777778777776 78999999999876653 345555
Q ss_pred HHHHHHHHh-cCCHH----HHHHHHHHHHhcCCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCC
Q 044815 300 TVLIDGLCK-KGWTE----KAFRLFLKLVRSDNYKPN-VHTYTAMISG---------YCKEEKMNRAEMLLERMKEQGLL 364 (675)
Q Consensus 300 ~~l~~~~~~-~g~~~----~A~~~~~~~~~~~~~~~~-~~~~~~li~~---------~~~~~~~~~A~~~~~~m~~~g~~ 364 (675)
...++---+ .|+.. ...+.|+-.+.+.|+.+- ...|+..+.. +..+.+++...++++++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 555443222 22222 223334444444443332 2234444432 23344556667777777653221
Q ss_pred CCHHHHH------HHHHHH-------HhcCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHH
Q 044815 365 PNTNTYT------SLIYGH-------CKVGNFERAYDLMDLMGK--EGCTPNIYAYNAIIDGLCKKGRVQE--AYELLKK 427 (675)
Q Consensus 365 p~~~~~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~ 427 (675)
-=...|+ .-|+.. -+...+..|.++++++.. .|+..+..+ .-..|--++ +.+++..
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKN 242 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHH
Confidence 0011111 111110 112233444444444332 122111111 001111111 1112211
Q ss_pred HHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHH----H-HHHHHHHHhcCC-------HH
Q 044815 428 AFQ----RELQ-ADKITYTILLSEHLKQAETKQALGLFCRM-VKAGLNPDIHA----Y-TTLIAAFCRQKK-------MK 489 (675)
Q Consensus 428 ~~~----~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m-~~~~~~p~~~~----~-~~li~~~~~~g~-------~~ 489 (675)
.++ .+.. .+..... ....-.+++. .-.+..|++.. | ...-+.+.+.|+ -+
T Consensus 243 ~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred HHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 111 0000 0000000 0001111111 11122222111 0 011122333344 34
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRD---GNISSAVKYFQRMNQI-GCAPDNITYGALISGLCKQSKLDEACQFY 565 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (675)
++..+++...+.-..-+..+|..+..---.. ...+.....+++.... ...|+ .+|..+++.-.+..-++.|+.+|
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHH
Confidence 5556666555432222344444443321111 1355666677776653 22333 46778888888888899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhCCChhhH-HHHHHHHHccCCHHHHHHHHHHHhcCCCCCC
Q 044815 566 ESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILES-LDKKLWIRTV-NTLIRKLCSEKRVGMAALFFHKLLGKDQNVD 643 (675)
Q Consensus 566 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 643 (675)
.++.+.+..+-++-..+...-|...++.+-|.++|+- +.+-++...| ...++.+...|+-..|..+|++++..+..||
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9999987777332223333445667889999999997 4554555444 7788889999999999999999999854444
Q ss_pred --HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 644 --RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 644 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...|..++.--..-|+.+.+.++-++...
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 46899999999999999998888776543
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.55 E-value=3.8e-06 Score=70.64 Aligned_cols=96 Identities=10% Similarity=-0.049 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
...+.++..+...|++++|.++|+-+.. +.+..-|..|+-++-..|++++|+..|.++...+|+ |+..+..++.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 4556677777778888888888877654 345666777777777888888888888888888877 7888888888888
Q ss_pred hcCchhHHHHHHHHHHhcc
Q 044815 656 ESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 656 ~~g~~~~A~~~~~~~~~~~ 674 (675)
..|+.+.|++.|+.++..|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 8888888888888777655
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=2.4e-05 Score=76.96 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSM 513 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 513 (675)
.|+...+...+.+.........+..++.+..+ +-...........+...|++++|+..++.++... +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45556666666655554444444333333222 1122222233334456788888888888877753 2345555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGD 592 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 592 (675)
.+.+.+.++.++|.+.++++... .|+ ......+..+|.+.|++++|+.++++..... +-|...|..|+.+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 77888888888888888888873 566 5556667788888888888888888877643 2356778888888888888
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 593 SATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 593 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
..+|... ....|.-.|++++|+..+.++.+..-. +..+|
T Consensus 424 ~~~a~~A---------------~AE~~~~~G~~~~A~~~l~~A~~~~~~-~~~~~ 462 (484)
T COG4783 424 RAEALLA---------------RAEGYALAGRLEQAIIFLMRASQQVKL-GFPDW 462 (484)
T ss_pred hHHHHHH---------------HHHHHHhCCCHHHHHHHHHHHHHhccC-CcHHH
Confidence 7776543 334566788888888888887666432 44443
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=7.9e-05 Score=66.84 Aligned_cols=187 Identities=13% Similarity=0.069 Sum_probs=140.5
Q ss_pred hcCCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044815 414 KKGRVQEAYELLKKAFQR---E-LQADKI-TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKM 488 (675)
Q Consensus 414 ~~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 488 (675)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 356788999999888743 3 445554 35566777888999999999999988763 33333322223334456999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 489 KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 489 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
++|.++++.+++.+. .|..++-.=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998873 56677777777777788888999988888774 5668999999999999999999999999999
Q ss_pred HhCCCCCCHHH-HHHHHHHHHHcC---CHHHHHHHHHHHhh
Q 044815 569 IGKGISPCEVT-RVTLAYEYCKQG---DSATAMIILESLDK 605 (675)
Q Consensus 569 ~~~g~~p~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~ 605 (675)
+- +.|.... +..++..+.-.| +.+.|.++|.+..+
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88 6675444 455776655444 55678889988766
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=4.7e-05 Score=82.21 Aligned_cols=196 Identities=16% Similarity=0.085 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAY-ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
.....+=.+...-|..++|- +++.++.+ ++..........+++.-.....+ ..+.+...+..|...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i 95 (694)
T PRK15179 29 TILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARA 95 (694)
T ss_pred HHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHH
Confidence 33334444555566666653 44444322 22333333333333333333333 245668889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDE 560 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 560 (675)
..+.|++++|..+++.+.+..+ -+......++..+.+.+++++|+..+++.... .|+ ......+..++.+.|++++
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999998642 24556777888999999999999999999884 465 5667778888999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHH
Q 044815 561 ACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLI 616 (675)
Q Consensus 561 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 616 (675)
|..+|++++..+ |+ ..++..++..+...|+.++|...|++..+. +....|+.++
T Consensus 173 A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 173 ADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 999999999843 33 578888999999999999999999997663 3334444443
No 131
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=2.4e-05 Score=71.14 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGL-CKQSK--LDEA 561 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 561 (675)
.++.+++...++..++.+. .+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4666677777777666543 466777777777777777777777777777643 22455666666653 55565 4777
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 562 CQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+++++.++. .|+ ...+..++..+.+.|++++|+..++++.+
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777773 343 35556677777777777777777777654
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=4e-05 Score=69.34 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=124.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 555 (675)
..+-..+...|+-+....+........ ..+......++....+.|++.+|...+++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 566677777888888888877755432 245566677888889999999999999998874 356788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--ChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 556 SKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKKL--WIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
|++++|..-|.+.++ +.|+ ...++.++..|.-.|+.+.|..++......+ +..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999988 4454 3566889999999999999999998876533 6667778888888999999998877
Q ss_pred HHH
Q 044815 633 HKL 635 (675)
Q Consensus 633 ~~~ 635 (675)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 653
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=0.00014 Score=79.27 Aligned_cols=59 Identities=7% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
.+..+..+|-+.|+.++|..+++++++.+ +.|..+.|.+...|... +.++|.+++.+.+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44455555555555555555555555543 33444555555555555 5555555544443
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00024 Score=64.31 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044815 412 LCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487 (675)
Q Consensus 412 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 487 (675)
+.+..+++-|.+.+++|.+. .+..|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444444444444444431 233333333333332 22344444455554443 24444444444444444555
Q ss_pred HHHHHHHHHHHHHC
Q 044815 488 MKESEKFFQEAITA 501 (675)
Q Consensus 488 ~~~A~~~~~~~~~~ 501 (675)
+++|..++++...+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555554444
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00054 Score=62.17 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=115.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044815 282 ELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ 361 (675)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 361 (675)
++.+.+.......+......-...|++.|++++|++..... -+......=+..+.+..+.+-|.+.+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444554433434344444456788889999998876542 23333334445566788889999999999873
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 362 GLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADK 437 (675)
Q Consensus 362 g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 437 (675)
-+..|.+-|..++.+ .+.+..|.-+|++|.++ .+|+..+.+-...++...|++++|..++++.+.+. ..++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 256677666666654 45688889999998874 47888888888888889999999999999888764 3455
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 044815 438 ITYTILLSEHLKQAETKQ-ALGLFCRMVKA 466 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~-A~~~~~~m~~~ 466 (675)
.+...++..-...|...+ ..+.+.++...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 555555555555554433 34445555543
No 136
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=8e-05 Score=67.46 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
..+-..+...|+-+....+..+.... ...|.......+....+.|++.+|+..+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444555555555554443321 23333344444555555555555555555554432 44555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFY 565 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (675)
|+.++|..-|.+..+... -+...++.+...|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555555554321 233444445555555555555555555544432 113333444444445555555555443
Q ss_pred H
Q 044815 566 E 566 (675)
Q Consensus 566 ~ 566 (675)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=4e-06 Score=71.68 Aligned_cols=110 Identities=12% Similarity=-0.073 Sum_probs=71.5
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 044815 529 YFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-- 605 (675)
Q Consensus 529 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 605 (675)
.+++... ..|+ ......+...+...|++++|.+.++.+...+. .+...+..++..|.+.|++++|...+++..+
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445544 2343 33455566667777777777777777776331 1345556677777777777777777777644
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+...+..++..+...|++++|...|+++++.+|.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 234556666777777777777777777777777665
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=4.2e-05 Score=65.99 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
+...+...|++++|+..++...... .....+...+.+|...|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4444555555555555554421111 13334445555555555555555555544
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=9.7e-05 Score=72.83 Aligned_cols=181 Identities=15% Similarity=0.102 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGA 547 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 547 (675)
.|+...+...+.+......-..+..++.+..+.+ -..--|. ..-.+...|++++|+..++.+... .|| ...+..
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~ 345 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYG-RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLEL 345 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHH-HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHH
Confidence 4556666666665554444444444433333311 1122233 333456789999999999998874 455 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
....+.+.|+.++|.+.+++++. ..|+ ......++.+|.+.|+..+|+.+++.... +.++..|..|..+|.+.|+
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 77789999999999999999999 5676 45567899999999999999999999765 4588899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhcc
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 674 (675)
..+|...+. ..|+-.|+|++|...+..+.++.
T Consensus 424 ~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 424 RAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 888876544 46888899999999999888765
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=6.8e-05 Score=64.70 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=99.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----ITYGALISGLCKQSKLDEACQFYESMIGKGISPCE--VTR 580 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~ 580 (675)
...|..++..+ ..++...+...++.+.+.. |+. ...-.+...+...|++++|...|+.+.+....|.. ...
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 45677777776 4889999999999998853 332 33445667789999999999999999996633322 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
..|+..+...|++++|+..++.+...+ ....+...+.+|.+.|++++|+..|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 567889999999999999998865543 34456788999999999999999999864
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=6.4e-05 Score=74.98 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRV 625 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 625 (675)
++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..+. .+...+..-+..|.+.+++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3333444445555555555554422 32 2222444444445555555555443331 2333344444455555566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 626 GMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 626 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
+.|+++.+++.+..|. +..+|..|+.+|.+.|++++|...++
T Consensus 251 ~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 6666666666665555 55566666666666666666655544
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=0.014 Score=60.23 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChH
Q 044815 274 RGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPN----VHTYTAMISGYCKEEKMN 349 (675)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~ 349 (675)
.|++++|.+++-+|.++. ..+..+.+.|++-...+++.. +|-..| ...|+.+...+.....|+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 378999998888876652 245667778888776666532 222222 357888888888888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 350 RAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 350 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
+|.+.|..-.. . ...++++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+.
T Consensus 814 ~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~- 878 (1189)
T KOG2041|consen 814 EAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR- 878 (1189)
T ss_pred HHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc-
Confidence 99888876432 1 23466777777776665555443 345566677889999999999998876442
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 430 QRELQADKITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 430 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
+. | ...+..|...+++.+|.++-+..
T Consensus 879 --s~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 879 --SL-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --cC-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1 23456677778888888776544
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=0.00014 Score=62.10 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
....+...+...|++++|...|+.+...+. .+...+..+...+.+.|++++|...+++..+.+ +.+...+..+..++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 344444555555555555555555554432 244455555555555555555555555554432 223444444555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 044815 554 KQSKLDEACQFYESMIG 570 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~ 570 (675)
..|++++|...+++.++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555555
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=4.1e-05 Score=70.73 Aligned_cols=106 Identities=22% Similarity=0.167 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 627 (675)
-+.+.++|++|+..|.++++ +.|+..+| ..-+.+|.+.|.++.|++-.+....- ....+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35577888888888888888 66665555 44677888888888888877776552 245678888889999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
|++.|+++++.+|. +......|-.+--+.+.
T Consensus 168 A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 168 AIEAYKKALELDPD-NESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHhhhccCCC-cHHHHHHHHHHHHHhcC
Confidence 99999999888887 77666666655444443
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00023 Score=68.44 Aligned_cols=280 Identities=13% Similarity=0.021 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQ 450 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 450 (675)
......+.+..++.+|+..+...++.. +.+..-|..-+..+...|++++|.--.+.-.+... -......-.-+.+...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhhhhhhh
Confidence 345567778888999999999888875 44566677777778888888888776665544321 1222444445555556
Q ss_pred CCHHHHHHHHHHHHHc---C-------------CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044815 451 AETKQALGLFCRMVKA---G-------------LNPDIHAYTTL-IAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSM 513 (675)
Q Consensus 451 ~~~~~A~~~~~~m~~~---~-------------~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 513 (675)
++..+|.+.++.-... + -+|.-..+..+ ..++...|++++|...--...+.. ....+..+
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHH
Confidence 6666666665522200 0 01111222222 223345566666666665555532 22233333
Q ss_pred HHHH--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHhC---CCCC
Q 044815 514 ICGY--LRDGNISSAVKYFQRMNQIGCAPDNITYGAL-------------ISGLCKQSKLDEACQFYESMIGK---GISP 575 (675)
Q Consensus 514 i~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~---g~~p 575 (675)
+++. --.++.+.|...|++.+.. .|+...-... .+-..+.|++.+|.+.|.+.+.. ...|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3332 2455666677776666653 3554322111 11234566677777777766652 1222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHH--HHccCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHH
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRK--LCSEKRVGMAALFFHKLLGKDQNV-DRVSLAALKN 652 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 652 (675)
+...|...+....+.|+.++|+.-.++..+-+...++..+.++ +...+++++|.+.|+++.+....+ +..++.....
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQL 365 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 3334444555566667777766666665554433333333333 334666777777776666554321 2334444444
Q ss_pred HHHhc
Q 044815 653 ACYES 657 (675)
Q Consensus 653 ~~~~~ 657 (675)
++-++
T Consensus 366 aLkkS 370 (486)
T KOG0550|consen 366 ALKKS 370 (486)
T ss_pred HHHHh
Confidence 44333
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00016 Score=72.12 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK 557 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 557 (675)
|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..+.. +-+...+..-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444556666666666665543 22 23335555555555666666666655431 2244445555555666666
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 558 LDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
++.|+.+.+++.+ ..|+. .+|..|+.+|.+.|+++.|+..++.++
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666 44544 355666666666666666666666544
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=6.4e-05 Score=59.29 Aligned_cols=91 Identities=20% Similarity=0.122 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
..++..+...|++++|...++++.+. .+...+..++..+...|++++|.+.++++++..+. +..++..++.++...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 34455555556666666666554431 22344555666666667777777777777776665 5566677777777777
Q ss_pred chhHHHHHHHHHHh
Q 044815 659 KYALFSDLSQRIAE 672 (675)
Q Consensus 659 ~~~~A~~~~~~~~~ 672 (675)
++++|...++++.+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 77777777776654
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.01 E-value=1.9e-05 Score=58.05 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=57.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHh
Q 044815 608 WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN-KYALFSDLSQRIAE 672 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 672 (675)
++..|..++..+...|++++|+..|+++++.+|. +...|..++.++...| ++++|.+.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999998 8899999999999999 79999999999876
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=1.5e-05 Score=61.20 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=26.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
..++.+|.+.|++++|+.++++ .+.++. +......++.++.+.|++++|++.+++
T Consensus 29 ~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 29 YNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3345555555555555555554 333332 333334445555555555555555554
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=0.00013 Score=60.59 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC----hhhHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPC----EVTRVTLAYEYCKQGDSATAMIILESLDK-KLW----IRTVNT 614 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~ 614 (675)
++..++..+.+.|++++|...|+.+++.. |+ ...+..++.++.+.|++++|.+.++.+.. .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45567777888888999999888888742 32 24556688888888888888888888765 222 345777
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
++.++.+.|+.++|...++++++..|+ +...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG-SSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC-ChhH
Confidence 788888888888888888888888876 4443
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=4e-05 Score=55.52 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++..+.+.|++++|+..|+++++..|. +...+..++.++...|++++|..+++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677777778888888887777777 777777778888888888888877777765
No 152
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.92 E-value=0.028 Score=55.39 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=44.0
Q ss_pred HHhcCChhHHHHHHHHHhhC--CCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHC----CCCCCHH
Q 044815 198 ACELGLVEYAEEVFDEMCAR--GVC------------ADASSYKLMVVAYCRMGRVTEADRWLSAMLDR----GAILDNA 259 (675)
Q Consensus 198 ~~~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~ 259 (675)
+.+.+.+++|.+.+..-... +.. +|...=+..+.++...|++.++..+++++... ....+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34677777777776554332 111 12222345566778888888888777776543 3346777
Q ss_pred HHHHHHHHHHh
Q 044815 260 TLTLLITAFCD 270 (675)
Q Consensus 260 ~~~~ll~~~~~ 270 (675)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 77776666555
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.91 E-value=0.0058 Score=59.44 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 148 NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEM 179 (675)
Q Consensus 148 ~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (675)
++++|.+.|+.....|...|++++|...|.+.
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 66677777777777777777777777666654
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00034 Score=57.99 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD----NITYGALISGLCKQSKLDEACQFYESMIGKGIS--PCEVTRVT 582 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~ 582 (675)
++..++..+.+.|++++|...++++.+.. |+ ...+..+..++.+.|++++|...|+.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44555666666677777777776666532 22 234455666666677777777777766653211 11234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh
Q 044815 583 LAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++.++.+.|+.++|.+.++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 66666667777777776666544
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.5e-05 Score=48.23 Aligned_cols=33 Identities=36% Similarity=0.744 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN 366 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 366 (675)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0029 Score=61.19 Aligned_cols=340 Identities=11% Similarity=0.012 Sum_probs=184.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-TNTYTSLIYGHCKV 380 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 380 (675)
....+.+..++.+|+..+...++.. +.+..-|..-...+...+++++|.--.+.-.+. .|+ .....-.-.++...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 3455566666666666665555432 233344444555555555555555444443321 111 11222333333333
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHH
Q 044815 381 GNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL-QADKITYTILL-SEHLKQAETKQALG 458 (675)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~~~~~~~~~~A~~ 458 (675)
++..+|.+.++ +...| ....|+..++....... +|...+|..+- ..+.-.|+.++|..
T Consensus 131 ~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 34444443333 11111 11222333333332222 23344554443 35566899999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-------------HHHHHHHHHHcCCHHH
Q 044815 459 LFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKET-------------YTSMICGYLRDGNISS 525 (675)
Q Consensus 459 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~ 525 (675)
.--...+.+ ..+......-..++.-.++.+.|...|++.+..+ |+... +..-.+-..+.|++.+
T Consensus 191 ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 191 EAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 887777654 2233333333334456789999999999998865 44332 2222344567899999
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 526 AVKYFQRMNQI---GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 526 A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
|.+.|.+.+.. ...|+...|........+.|+.++|+.-.++.++ +.|.- ..+..-+.++.-.++|++|.+-++
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998863 2345566777777888899999999999999988 44421 223334566777899999999999
Q ss_pred HHhhC-CCh---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---hcCchhHHHHHHHHHH
Q 044815 602 SLDKK-LWI---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY---ESNKYALFSDLSQRIA 671 (675)
Q Consensus 602 ~~~~~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~ 671 (675)
+..+. .+. .++.-...++-+..+.+. ..++--....-..++...|..++-++- ..|.-.+|+..|+.+-
T Consensus 346 ~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevg 421 (486)
T KOG0550|consen 346 KAMQLEKDCEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVG 421 (486)
T ss_pred HHHhhccccchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHH
Confidence 86553 222 233333333333333221 111111111112234556665554442 3555567776666553
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=2.6e-05 Score=48.19 Aligned_cols=33 Identities=33% Similarity=0.672 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD 541 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 541 (675)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555555444444
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00016 Score=72.58 Aligned_cols=103 Identities=12% Similarity=-0.010 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
-...+...|++++|+..|+++++ ..|+ ...+..++.+|.+.|++++|+..++++.. +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45567788999999999999998 4454 46677889999999999999999999865 3467788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
+++|+..|+++++.+|. +......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999999999987 76666555444
No 159
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.86 E-value=0.03 Score=53.98 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCCCHHH--HHHH
Q 044815 335 YTAMISGYC--KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHC--KVGNFERAYDLMDLMGKEGCTPNIYA--YNAI 408 (675)
Q Consensus 335 ~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~l 408 (675)
|..|-.++. ..|+-..|.++-.+..+. +..|..-...++.+-. -.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 344444433 245666666655544321 3334444444444432 356777777777777652 22221 1222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 409 IDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVK 465 (675)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 465 (675)
.-.-.+.|+.+.|..+-++....- +.-...+...+...|..|+++.|+++++.-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 222334566666666655554432 22334455556666666666666666655443
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.85 E-value=0.0042 Score=60.38 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=119.2
Q ss_pred chhhhHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 044815 131 HFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEV 210 (675)
Q Consensus 131 ~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 210 (675)
.-...|...+..+...+++++|.+.|......+.+.++...|-..+.++.. +| +.+++++|++.
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~---------------~~-k~~~~~~Ai~~ 96 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAAN---------------CY-KKGDPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---------------HH-HHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------HH-HhhCHHHHHHH
Confidence 345566677778888999999999999999999888888777666655432 23 33366677766
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044815 211 FDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK 290 (675)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (675)
+++.. ..|...|++..|-..+.++-+. |-.. .|++++|++.|++..+.
T Consensus 97 ~~~A~---------------~~y~~~G~~~~aA~~~~~lA~~---------------ye~~--~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 97 YEKAI---------------EIYREAGRFSQAAKCLKELAEI---------------YEEQ--LGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHH---------------HHHHHCT-HHHHHHHHHHHHHH---------------HCCT--T--HHHHHHHHHHHHHH
T ss_pred HHHHH---------------HHHHhcCcHHHHHHHHHHHHHH---------------HHHH--cCCHHHHHHHHHHHHHH
Confidence 65553 4567777777777666665331 1111 04666666666664432
Q ss_pred ----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHH
Q 044815 291 ----GWKP--NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN----YKPNVHT-YTAMISGYCKEEKMNRAEMLLERMK 359 (675)
Q Consensus 291 ----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~ 359 (675)
| .+ -..++..+...+.+.|++++|.++|++.....- .+.+... |-..+-++...|++..|...+++..
T Consensus 145 y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 145 YEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11 123455666777788888888888877755321 1112221 2223334455677777777777766
Q ss_pred Hc--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHh
Q 044815 360 EQ--GLLPN--TNTYTSLIYGHCK--VGNFERAYDLMDLMG 394 (675)
Q Consensus 360 ~~--g~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 394 (675)
.. ++..+ ......|+.++-. ...++.|..-|+.+.
T Consensus 224 ~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 224 SQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 43 22212 2334455555532 123444444444443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=7.4e-05 Score=57.39 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-ChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGI-SPCEVTRVTLAYEYCKQGDSATAMIILESLDKKL-WIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.|+++.|+.+++++.+... .++...+..++.+|.+.|++++|..++++....+ +......++.++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566666666666666322 1123334446666666666666666666522222 2233334466666777777777766
Q ss_pred HH
Q 044815 633 HK 634 (675)
Q Consensus 633 ~~ 634 (675)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00059 Score=68.55 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ 590 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 590 (675)
.....+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++ +.|+ ...+..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 34566778899999999999999853 23567888889999999999999999999998 4554 56778899999999
Q ss_pred CCHHHHHHHHHHHhh
Q 044815 591 GDSATAMIILESLDK 605 (675)
Q Consensus 591 g~~~~A~~~~~~~~~ 605 (675)
|++++|+..|++...
T Consensus 84 g~~~eA~~~~~~al~ 98 (356)
T PLN03088 84 EEYQTAKAALEKGAS 98 (356)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999766
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00014 Score=67.25 Aligned_cols=88 Identities=13% Similarity=-0.063 Sum_probs=79.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchh
Q 044815 584 AYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYA 661 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 661 (675)
+.-..+.+++++|+..|.+..+ +.+.+-|..-..+|.+.|.++.|++-.+.++..+|. ...+|..|+.+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4556788999999999999876 346777888899999999999999999999999998 8899999999999999999
Q ss_pred HHHHHHHHHHh
Q 044815 662 LFSDLSQRIAE 672 (675)
Q Consensus 662 ~A~~~~~~~~~ 672 (675)
+|.+.|+|+++
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 99999999986
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00036 Score=54.84 Aligned_cols=90 Identities=22% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
+...+...|++++|...++++.+. .|+ ...+..++..+...|++++|.+.++.... +.+...+..++..+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 344444455555555555555442 222 13344455555555555555555555433 1222345555566666666
Q ss_pred HHHHHHHHHHHhcCC
Q 044815 625 VGMAALFFHKLLGKD 639 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~ 639 (675)
+++|...++++++.+
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 666666666665544
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.77 E-value=0.00021 Score=68.50 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNI----YAYNAIIDGLCKKGRVQEAYELL 425 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 425 (675)
.-+|+.|+......+|+...+-| .-|. ..|..|.++|.-.+++++|+++-
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 34678888888888888887776 2232 33555566666666777777654
No 166
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.75 E-value=5.2e-05 Score=46.40 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCA 539 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 539 (675)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444333
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.0014 Score=58.53 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD--NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTL 583 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 583 (675)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++++++ ..|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 34566667777777888888888887776432222 34666777777788888888888888777 3343 3444556
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 584 AYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+..|...|+...+..-++... ..+++|.+++++++..+|.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCch
Confidence 667777776655554333322 1367788888888887765
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=5.4e-05 Score=46.32 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQGLLP 365 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 365 (675)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00065 Score=68.21 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 044815 331 NVHTYTAMISGYCKEEKMNRAEMLLERMKEQ--GLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAI 408 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 408 (675)
+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..+++..+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444444444444455555555554433 11111223335555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 409 IDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
++.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 555555555555555555554444444444444444333
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.00067 Score=68.12 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=92.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044815 397 GCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR--ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHA 474 (675)
Q Consensus 397 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 474 (675)
+.+.+......+++......+++++..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777788877777888888888877654 2223344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD 520 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 520 (675)
++.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776656666666555555544
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0099 Score=51.03 Aligned_cols=126 Identities=18% Similarity=0.074 Sum_probs=61.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG---ISPCEVTRV 581 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~ 581 (675)
|++..--.|.....+.|++.+|...|++...--..-|......+.++....+++..|...++.+.+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 45555555555555566666666666555432223344555555555555556666665555555531 1222 333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.++..|...|+.++|...|+.... -|+...-......+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 445555555555555555555433 233332222333344555555544433
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.001 Score=56.29 Aligned_cols=92 Identities=8% Similarity=-0.100 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 622 (675)
-.+..-+...|++++|..+|+-+.. +.|.. .-+..|+.++...|++++|+..|..... +.++..+-.++.++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3345556677888888888887777 44543 4446677777788888888888877543 45677777778888888
Q ss_pred CCHHHHHHHHHHHhcCC
Q 044815 623 KRVGMAALFFHKLLGKD 639 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~ 639 (675)
|+.+.|++.|+.++...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 88888888887776653
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=97.66 E-value=0.00091 Score=56.80 Aligned_cols=84 Identities=17% Similarity=-0.027 Sum_probs=41.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--hCCChhhHHHHHHHHHccCCHHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD--KKLWIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
...|++++|..+|+-+.-.+.. +..-+..|+.++...+++++|+..|.... ...++...-..+.++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555555555442211 12223445555555555555555555432 23344444455555555555555555
Q ss_pred HHHHHhc
Q 044815 631 FFHKLLG 637 (675)
Q Consensus 631 ~~~~~~~ 637 (675)
.|+.+++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555554
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0016 Score=60.87 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc-C--CHHHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQ-G--DSATAMI 598 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~-g--~~~~A~~ 598 (675)
.+....-++.-...+ +-|...|..|...|...|+++.|..-|.+..+ +.|+. ..+..++.++... | ...++..
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 333333343333322 33567888888888888888888888888877 44433 3444455554332 2 2456777
Q ss_pred HHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 599 ILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 599 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+|+++.+. .++.+...|...+.+.|++.+|...|+.|++..|.
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 77776553 35666667777777788888888888888777664
No 175
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.65 E-value=0.0005 Score=66.05 Aligned_cols=282 Identities=13% Similarity=0.075 Sum_probs=166.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH--hh--cCCC-CCHHHHHHHHH
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLLPNTN----TYTSLIYGHCKVGNFERAYDLMDLM--GK--EGCT-PNIYAYNAIID 410 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~-~~~~~~~~li~ 410 (675)
.-+|+.|+....+.+|+..++.|.. |.. +|.-|..+|.-.+++++|+++...= .. .|-. -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4589999999999999999998765 543 4666777888888999999876531 11 1111 12333445666
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 411 GLCKKGRVQEAYELLKKAF----QRELQ-ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 411 ~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
.+--.|.+++|.-...+-+ +.|.+ .....+..+.+.|...|+.-.... -.+.|-.++.+ -
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev-~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEV-T---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHH-H----------
Confidence 6666777888776554432 22211 122234444555554443111000 00001111110 0
Q ss_pred CCHHHHHHHHHHHHH----CC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHhc
Q 044815 486 KKMKESEKFFQEAIT----AG-LFPTKETYTSMICGYLRDGNISSAVKYFQRM----NQIGCAP-DNITYGALISGLCKQ 555 (675)
Q Consensus 486 g~~~~A~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~ 555 (675)
..++.|.++|.+-++ .| --.....|..|.+.|.-.|+++.|+...+.- ++.|-+. ....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 112334444433221 11 0012345667777777788888888766542 2333221 234677888888889
Q ss_pred CCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------CCChhhHHHHHHHHHcc
Q 044815 556 SKLDEACQFYESMIG----KGIS-PCEVTRVTLAYEYCKQGDSATAMIILESLDK--------KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 556 g~~~~A~~~~~~~~~----~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~ 622 (675)
|+++.|.+.|+.... .|-+ ......++|+++|.-..++++|+.++.+-.. -.....+-+|+.++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999998887553 2211 2235667888888888889999988877432 12345677788888888
Q ss_pred CCHHHHHHHHHHHhc
Q 044815 623 KRVGMAALFFHKLLG 637 (675)
Q Consensus 623 g~~~~A~~~~~~~~~ 637 (675)
|.-+.|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888887776554
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.00096 Score=52.14 Aligned_cols=81 Identities=9% Similarity=0.171 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 228 LMVVAYCRMGRVTEADRWLSAMLDRGA-ILDNATLTLLITAFCDKGFR-----GSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.... .++-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666888888888888888888 78888888888887775321 133456667777777777777777777
Q ss_pred HHHHHHh
Q 044815 302 LIDGLCK 308 (675)
Q Consensus 302 l~~~~~~ 308 (675)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766654
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.00023 Score=51.42 Aligned_cols=59 Identities=25% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
++..+.+.|++++|.+.|+++.+. .+...|..++.++...|++++|+..|+++++..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455666677777777777766552 24556677777777777777777777777776664
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0014 Score=58.44 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKL 619 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 619 (675)
.+..+...+...|++++|...|++.++.+..+. ...+..++..+.+.|++++|...+++... +.+...+..++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 455566666667777777777777665322221 23445556666666666666666655443 12344445555555
Q ss_pred HccCCH
Q 044815 620 CSEKRV 625 (675)
Q Consensus 620 ~~~g~~ 625 (675)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 554443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.018 Score=54.23 Aligned_cols=178 Identities=14% Similarity=0.111 Sum_probs=97.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKE--TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK- 554 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 554 (675)
....+...|++++|.+.|+++....+..... ..-.++.+|.+.+++++|...+++..+........-|.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3444455667777777777666643221111 1123455666677777777777776663211112223333333221
Q ss_pred -cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHH
Q 044815 555 -QS---------------K---LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTL 615 (675)
Q Consensus 555 -~g---------------~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 615 (675)
.+ + ..+|...|+++++. -|+. .-..+|...+..+...--.. --.+
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~la~~-e~~i 181 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRLAKY-ELSV 181 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 10 1 23455556666552 2332 11233333333332211111 1246
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQN--VDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
++-|.+.|++..|+.-++.+++.-|. .....+..++.+|...|..++|.++...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 66788889999999989988887654 234567788888999999999988876553
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.58 E-value=0.0011 Score=58.97 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhC--C---ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKK--L---WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..++..+...|++++|...|++.... . ...+|..++..+...|++++|+..+++++...+. ...++..++.++.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 33444444444444444444443221 1 1224555555666666666666666666665554 4455555555555
Q ss_pred -------hcCchhHHHHHHHH
Q 044815 656 -------ESNKYALFSDLSQR 669 (675)
Q Consensus 656 -------~~g~~~~A~~~~~~ 669 (675)
..|++++|...+++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHH
Confidence 55565544444443
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00011 Score=53.68 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 588 CKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+.|++++|++.|+++.. +.+...+..++.+|.+.|++++|..++++++...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456777777777777544 335566666777777777777777777777776665
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.037 Score=47.63 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 044815 468 LNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG---CAPDNIT 544 (675)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~ 544 (675)
..|+...-..|..++.+.|+..+|...|++...--+--|....-.+.++....+++.+|...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3566666666777777777777777777777654444566666667777777777777777777766532 1233 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
-..+.+.+...|++.+|+.-|+..+. .-|+..........+.+.|+.++|..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34455667777777777777777776 3344444444455666777666655544433
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0027 Score=61.42 Aligned_cols=130 Identities=12% Similarity=-0.032 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG-LCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEY 587 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 587 (675)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|..+|+..++. +..+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555655556666666666666665422 1122333333333 22244555566666666553 122233444455555
Q ss_pred HHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 588 CKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.+.|+.+.|..+|++.... + ....|..++..-.+.|+.+...++.+++.+.-+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 5666666666666665432 1 223566666666666666666666666655543
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0064 Score=63.91 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=51.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRV 581 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 581 (675)
+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.++++.+ +.|...+|+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY 490 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence 4456666666666677888888888887774 46777777777778888888888888888777 555554543
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0015 Score=58.08 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAP--DNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554422111 112444455555555555555555555554
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.54 E-value=0.037 Score=56.81 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 191 LNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 191 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
+.+-+-.|...|.+++|.++ .-.|+ ...-|..|.......=+++-|.+.|.+...
T Consensus 559 ~~~~m~q~Ieag~f~ea~~i----aclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd------------------- 613 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQI----ACLGV--TDTDWRELAMEALEALDFETARKAYIRVRD------------------- 613 (1081)
T ss_pred ccccchhhhhccchhhhhcc----cccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhc-------------------
Confidence 33334455666666666553 11222 223344444433344444455544444332
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 271 KGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
-.+-+.+.-++++.++|-.|+... +...++-.|++.+|-++|.+
T Consensus 614 ----l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 614 ----LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 123344455667777776676643 44566677888888887754
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0018 Score=50.62 Aligned_cols=75 Identities=17% Similarity=0.371 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 374 IYGHCKVGNFERAYDLMDLMGKEGC-TPNIYAYNAIIDGLCKKGR--------VQEAYELLKKAFQRELQADKITYTILL 444 (675)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~li 444 (675)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- +-+.+.++++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555665555555 5555566655555544321 223344455555555555555555555
Q ss_pred HHHH
Q 044815 445 SEHL 448 (675)
Q Consensus 445 ~~~~ 448 (675)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 4443
No 188
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00012 Score=43.58 Aligned_cols=29 Identities=41% Similarity=0.859 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 044815 334 TYTAMISGYCKEEKMNRAEMLLERMKEQG 362 (675)
Q Consensus 334 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g 362 (675)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.079 Score=49.96 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGK--GISPCEVTRVTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
+..-|.+.|.+..|..-++.+++. +..........++.+|.+.|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334455566666666666666553 1122223444455555555555555554443
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.47 E-value=0.0098 Score=62.55 Aligned_cols=65 Identities=11% Similarity=-0.035 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
...+..++......|++++|...++++.. .++...|..++..+...|+.++|.+.|+++...+|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 35555566666667777777777777654 345566777788888888888888888888888776
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.46 E-value=0.00045 Score=50.61 Aligned_cols=63 Identities=21% Similarity=0.047 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccC-CHHHHHHHHHHHhcCCC
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEK-RVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 640 (675)
..+..++..+...|++++|+..|++..+ +.+...|..++.++.+.| ++++|++.++++++.+|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3445555555555555555555555433 224445666666666666 56677777766666543
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.2 Score=52.13 Aligned_cols=157 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCAR-GVCADASSYKLMVVAYCRMGRVTEADR 244 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 244 (675)
-|++++|.+++-+|.++.. -+..+.+.|++-.+.++++.--.. .-..-..+|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655431 233444555555555544321100 000113456666666666666666666
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 245 WLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 245 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.|..-... ...+..+.+. ..+++-..+-. ..+.+....-.+.+++.+.|..++|.+.|.+.-
T Consensus 818 yY~~~~~~---------e~~~ecly~l---e~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s- 879 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRL---ELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS- 879 (1189)
T ss_pred HHHhccch---------HhHHHHHHHH---HhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence 66543211 1123333332 22222222221 123456666777888888888888887775431
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 325 SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM 358 (675)
Q Consensus 325 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 358 (675)
.|. ..+..|...++|.+|.++-+..
T Consensus 880 ----~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 880 ----LPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ----CcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 122 2345666677777777765543
No 193
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.00018 Score=42.81 Aligned_cols=26 Identities=35% Similarity=0.738 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.14 Score=49.61 Aligned_cols=218 Identities=19% Similarity=0.208 Sum_probs=119.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HhcCC
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRE-LQADKIT--YTILLSEH---LKQAE 452 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~~---~~~~~ 452 (675)
+.|+.+.|...-+..-..- +--.......+...|..|+++.|+++++.-.... +.++..- -..|+.+- .-..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3444444444444433321 1123444455555555555555555555443321 1222211 11111111 11223
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
...|...-.+..+ ..||.. .-..-..++.+.|++.++-.+++.+-+....|+ ++. +..+.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHH
Confidence 4445544444443 344432 223345678888999999999999888754444 332 223345554 3443343
Q ss_pred HHHH-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhCC
Q 044815 532 RMNQ-IGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYC-KQGDSATAMIILESLDKKL 607 (675)
Q Consensus 532 ~m~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 607 (675)
+... ..++|| ......+..+-...|++..|..--+...+ ..|....|..|...-. ..|+-.++...+.+..+.|
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 3322 124554 55666777788888999998888888777 6787777777777654 4599999999888876643
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.38 E-value=0.00052 Score=50.99 Aligned_cols=57 Identities=19% Similarity=-0.005 Sum_probs=35.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 585 YEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
..|.+.+++++|.+.++++.. +.+...|...+..+.+.|++++|.+.++++++.+|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 456666666666666666544 334555666666666666666666666666666664
No 196
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.003 Score=61.17 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhHCCC-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 044815 225 SYKLMVVAYCRMGRVTEADRWLSAMLDRGA-ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLI 303 (675)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (675)
+|..++...-+.+..+.|..+|.+..+.+. ..+.....+++.-.+. ++.+.|.++|+...+. +..+...+...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~----~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN----KDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC----S-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 455555655566666666666666654321 2223333333332222 3555566666665554 333555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044815 304 DGLCKKGWTEKAFRLFLKLVRSDNYKP-NVHTYTAMISGYCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 360 (675)
+.+.+.|+.+.|..+|++.+..-.... ....|...+..=.+.|+++.+.++.+++.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666654321111 123555555555556666666666655555
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0042 Score=55.20 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHH-----hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHH
Q 044815 187 ITSTLNRVVGIAC-----ELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATL 261 (675)
Q Consensus 187 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 261 (675)
+..+|..++..|. +.|.++-....+..|.+.|+..|..+|+.|++.+=+ |++- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 3444444444443 345666677777778888888888888888777654 2211 01111111
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 044815 262 TLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKG 310 (675)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 310 (675)
..-| ..+.+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 112 ---F~hy-----p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 ---FMHY-----PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---hccC-----cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111 1234555566666666666666666666666665444
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00064 Score=49.65 Aligned_cols=51 Identities=37% Similarity=0.435 Sum_probs=30.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 553 CKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+.|++++|+++|+++.+. .| +......++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666666666652 33 334555566666666666666666666554
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0039 Score=59.14 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHH
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCE----VTRVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVN 613 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~ 613 (675)
..|...+..+.+.|++++|...|+.+++. .|+. ..++.++..|...|++++|...|+.+.+. | ....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445678888888888888873 3432 46677888888888888888888887652 2 234455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++..+.+.|+.++|..+|+++++..|+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5677777888889999888888888876
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.26 E-value=0.022 Score=58.27 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHH---------HHHHhcCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLF---------LKLVRSDNYKPNVHTYTAMISGYCKEEK--MNRAEMLLERMKEQGLL 364 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~ 364 (675)
...+.+-+--|...|.+++|.++- +.+..+ ..+...++..-.+|.+..+ +-+.+.-+++|++.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 344555556677888888876551 111110 1223334455556665444 34455556778888887
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 365 PNTNTYTSLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (675)
|+.... ...++-.|++.+|.++|.+-
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 887543 44556678888888888654
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.25 E-value=0.0004 Score=52.40 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhcC----CCC-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLGK----DQN-VD-RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+++.++..|...|++++|+.+|+++++. |.. |+ ..++..++.++...|++++|.++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677777777888888888888777643 222 12 45788889999999999999999988875
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.052 Score=49.79 Aligned_cols=168 Identities=18% Similarity=0.233 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH-
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLF--PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALISGLC- 553 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~- 553 (675)
...+...|++++|.+.|+.+...... -.....-.++.++.+.|++++|...++++++. -|+. ..+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 34445556666666666666654211 11233445556666666666666666666553 2221 11221222211
Q ss_pred ------------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc
Q 044815 554 ------------KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCS 621 (675)
Q Consensus 554 ------------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 621 (675)
..+...+|...|+.+++. -| ...-..+|...+..+...-.. .--.++..|.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP-------------~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~ 153 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR--YP-------------NSEYAEEAKKRLAELRNRLAE-HELYIARFYYK 153 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH---T-------------TSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH--Cc-------------CchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 112233445555555442 12 223334444444443321111 11236677888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCchhHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVD--RVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~ 664 (675)
.|++..|..-++.+++.-|+.. ...+..++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999988877522 235677888888888887443
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.013 Score=47.89 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=24.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCE--VTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
++-..|+.++|+.+|++.++.|+.... ..+..++..|...|+.++|..++++.
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445555555555555554443321 23333444455555555555555443
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0096 Score=52.97 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC
Q 044815 221 ADASSYKLMVVAYCRM-----GRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN 295 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (675)
.+-.+|..+|..|.+. |.++=....+..|.+.|+.-|..+|+.||..+=+. .+. -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg----~fv-p~n~fQ~~F------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG----KFV-PRNFFQAEF------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC----Ccc-cccHHHHHh-------
Confidence 4666666666666543 44555555666666666666666666666665431 111 001111110
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKM-NRAEMLLERMK 359 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~ 359 (675)
. - .-.+.+-|++++++| +..|+.||..++..+++.+++.+.. .+..++.-.|.
T Consensus 113 -------~-h--yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 -------M-H--YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred -------c-c--CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 0 0 123456789999998 5689999999999999999876652 33334444443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.16 E-value=0.0082 Score=56.99 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=77.8
Q ss_pred CHHHHHHHHHH-HHHcCCHHHHHHHHHHHhhC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC--CCHHHH
Q 044815 576 CEVTRVTLAYE-YCKQGDSATAMIILESLDKK-LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN--VDRVSL 647 (675)
Q Consensus 576 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~ 647 (675)
+....+..+.. +.+.|++++|...|+.+.+. |+ ...+..++..|...|++++|...|+++++..|. .....+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 33444444444 46789999999999998763 33 357788999999999999999999999987664 135567
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 648 AALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 648 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..++.++...|++++|.++++++++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77889999999999999999998763
No 206
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.2 Score=53.56 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHH---------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 044815 137 IVCATSLISNGNFERAHEVMQC---------MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYA 207 (675)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~~~~---------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 207 (675)
-.-+.-|.+.|+|++|...|-. +|+-|....+..+-..+++.+.+.|+ .+..--..|+.+|.+.++.++-
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHH
Confidence 3446667788999998877764 46677777788888888888888885 3445556788899999998887
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044815 208 EEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEM 287 (675)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 287 (675)
.+..+... .|.. ..-....+..+.+.+-.++|..+-.+... +......++... +++++|++.+..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille~~------~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLEDL------HNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHHHh------cCHHHHHHHHhcC
Confidence 77766554 3221 11234566777777777777766655433 445555555543 7788888887765
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.13 E-value=0.33 Score=48.07 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 044815 508 ETYTSMICGYLRDGNISSAVKYFQRMNQIG-CAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTLAY 585 (675)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~ 585 (675)
.+|..+++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|++..|-.+|+--+. .-||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 456667777777778889999999998887 5678888888887665 5788889999987666 33555555 45666
Q ss_pred HHHHcCCHHHHHHHHHH----HhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 586 EYCKQGDSATAMIILES----LDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
-+...++-+.|..+|+. +.+..-...|..++..-..-|+...+..+=+++.+.-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 77788999999999984 333334567888998888899998888888888777665
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.12 E-value=0.0021 Score=64.01 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC-h---hhHHHHHHHHHccCCHHHHHHHHHHHhcCC
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDK-KLW-I---RTVNTLIRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
+...++.++.+|.+.|++++|+..|++... .|+ . .+|..++.+|.+.|+.++|+..++++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 346778888899999999999999988544 343 3 348888999999999999999999988863
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.11 E-value=0.35 Score=48.06 Aligned_cols=142 Identities=10% Similarity=0.128 Sum_probs=78.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 197 IACELGLVEYAEEVFDEMCARGVCADASS------YKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 197 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
.+-+++++.+|+++|.++.+.. ..++.. -+.++++|.. ++.+.....+..+.+.- | ...|-.+..++..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3457888999999998887642 223222 2345556653 45555555555555432 2 2333333333222
Q ss_pred cCCCCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCCHH
Q 044815 271 KGFRGSIKQAFELLEEMVRK--GWKP------------NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS---DNYKPNVH 333 (675)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 333 (675)
.. .+.+..|.+.+...... +.+| |...-+..+..+...|++.++..++.++... ..+.-+..
T Consensus 90 Y~-~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YK-QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HH-hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 11 16788888777766554 3222 1112244566777788888888877777543 12234667
Q ss_pred HHHHHHHHHHh
Q 044815 334 TYTAMISGYCK 344 (675)
Q Consensus 334 ~~~~li~~~~~ 344 (675)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 77765555543
No 210
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.04 Score=45.05 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=73.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHH
Q 044815 160 VSSFAEIGRLKEGFSMVIEMTNNGLPLI--TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD----ASSYKLMVVAY 233 (675)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~ 233 (675)
...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.+|++..... |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3456678889999999999988886544 3466778888999999999999999887652 33 22233344577
Q ss_pred HHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHH
Q 044815 234 CRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFC 269 (675)
Q Consensus 234 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 269 (675)
...|+.++|++++-..... +...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 8889999999888776542 3335555555543
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.33 Score=47.61 Aligned_cols=300 Identities=14% Similarity=0.135 Sum_probs=159.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGH 377 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 377 (675)
.|..+...-...|+.+-|..+++. .|+.. .-+..+.+.|+.+.| +.+..+.|- ||. +|..|+..-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~-------Ep~~~---~qVplLL~m~e~e~A---L~kAi~SgD-~DL-i~~vLl~L~ 66 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL-------EPRAS---KQVPLLLKMGEDELA---LNKAIESGD-TDL-IYLVLLHLK 66 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc-------CCChH---HHHHHHhcCCchHHH---HHHHHHcCC-ccH-HHHHHHHHH
Confidence 466777778889999998877632 24432 224555667777766 556666543 243 455555433
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
-+.. .. +++.-+.. .|.. ..+...|++..+.+.-..+|.+-- .........+-.++.. .+.++-.
T Consensus 67 ~~l~-~s---~f~~il~~---~p~a---~~l~~~~~r~~~~~~L~~~y~q~d----~~~~~a~~~l~~~~~~-~~~~~~~ 131 (319)
T PF04840_consen 67 RKLS-LS---QFFKILNQ---NPVA---SNLYKKYCREQDRELLKDFYYQED----RFQELANLHLQEALSQ-KDVEEKI 131 (319)
T ss_pred HhCC-HH---HHHHHHHh---Ccch---HHHHHHHHHhccHHHHHHHHHhcc----hHHHHHHHHHHHHHhC-CChHHHH
Confidence 3222 11 23333322 2332 345566777677666555554311 1111122222222222 4444444
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 458 GLFCRMVKA-GLNPDIHAYTTLIAAFCRQKKMKESEKFFQ---EAITA-GLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 458 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
..+....+. +-..+......+ .++..++++ ++.+. +......+.+..|.-+...|+...|.++-.+
T Consensus 132 ~~L~~a~~~y~~~k~~~f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~ 202 (319)
T PF04840_consen 132 SFLKQAQKLYSKSKNDAFEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE 202 (319)
T ss_pred HHHHHHHHHHHhcchhHHHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444333321 000111111111 111222221 11111 1111223455556667778888888877666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhH
Q 044815 533 MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTV 612 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 612 (675)
.. .||..-|-..+.+++..++|++-..+... .-. +.-|.-++.++.+.|+..+|..++.++. +
T Consensus 203 Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~~eA~~yI~k~~-------~ 265 (319)
T PF04840_consen 203 FK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNKKEASKYIPKIP-------D 265 (319)
T ss_pred cC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCHHHHHHHHHhCC-------h
Confidence 53 47888888888888888888876665332 122 2456667778888888888888888743 2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
..-+..|.+.|++.+|.+..-+. + |...+..+...+...++
T Consensus 266 ~~rv~~y~~~~~~~~A~~~A~~~-----k-d~~~L~~i~~~~~~~~~ 306 (319)
T PF04840_consen 266 EERVEMYLKCGDYKEAAQEAFKE-----K-DIDLLKQILKRCPGNND 306 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc-----C-CHHHHHHHHHHCCCCCh
Confidence 45677788888888887765442 1 55555555544444433
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.053 Score=49.45 Aligned_cols=163 Identities=11% Similarity=0.029 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
.+.-.+.|++-. ..+.+.++..+.-.|.+.-...++.+.++..-+-++.....+++.-.+.|+.+.|...|++
T Consensus 165 ~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 355555554432 2445566777777888888899999998865555777888888888999999999999997
Q ss_pred HHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 568 MIGK-----GISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKL--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 568 ~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
..+. |+.-+..........|.-.+++.+|...+.++...+ ++...|.-+-++.-.|+...|++..+.|++..|
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7642 333333444455666777888899999998887654 455566666666678999999999999999988
Q ss_pred CCCHHH-----HHHHHHHHHhc
Q 044815 641 NVDRVS-----LAALKNACYES 657 (675)
Q Consensus 641 ~p~~~~-----~~~l~~~~~~~ 657 (675)
.|...- +.++...++..
T Consensus 318 ~~~l~es~~~nL~tmyEL~Ys~ 339 (366)
T KOG2796|consen 318 RHYLHESVLFNLTTMYELEYSR 339 (366)
T ss_pred ccchhhhHHHHHHHHHHHHhhh
Confidence 754332 44555555543
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.99 E-value=0.32 Score=45.59 Aligned_cols=222 Identities=19% Similarity=0.131 Sum_probs=129.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 415 KGRVQEAYELLKKAFQRELQA-DKITYTILLSEHLKQAETKQALGLFCRMVKA-GLNPDIHAYTTLIAAFCRQKKMKESE 492 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (675)
.+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666655543221 3456666667777777777777777666542 22344555666666666677777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 493 KFFQEAITAGLFPTKETYTSMIC-GYLRDGNISSAVKYFQRMNQIGCAP----DNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
+.+.........+ ......... .+...|+++.|...+.+... ..| ....+......+...++.+++...+.+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 7777776643322 122222222 56677777777777777654 222 223333344445566777777777777
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC-hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 568 MIGKGISPC--EVTRVTLAYEYCKQGDSATAMIILESLDKK-LW-IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 568 ~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+. .++ ...+..+...+...++.+.|...+...... +. ...+..+...+...|..+++...+.+.+...+.
T Consensus 193 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 193 ALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7663 222 345566666677777777777777665543 22 334444444444555677777777776666554
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.95 E-value=0.1 Score=47.76 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 044815 549 ISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..-|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3345555555555555555554
No 215
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.94 E-value=0.79 Score=49.28 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHH--HHHHH-HHhcCCHHHHHHHHHHHhh-------cCCCCCHHHHHHHHHHHHhcC-
Q 044815 348 MNRAEMLLERMKEQGLLPNTNTYT--SLIYG-HCKVGNFERAYDLMDLMGK-------EGCTPNIYAYNAIIDGLCKKG- 416 (675)
Q Consensus 348 ~~~A~~~~~~m~~~g~~p~~~~~~--~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 416 (675)
..+|.+.++...+.|.. ...... ....+ +....+.+.|+.+++.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45677777777665432 111111 11122 3345677777777777665 33 2223444555555432
Q ss_pred ----CHHHHHHHHHHHHhCC
Q 044815 417 ----RVQEAYELLKKAFQRE 432 (675)
Q Consensus 417 ----~~~~A~~~~~~~~~~~ 432 (675)
+.+.|..++.+..+.|
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred CccccHHHHHHHHHHHHhcC
Confidence 3344555555554443
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0055 Score=45.36 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|.+.+++++|.+++++++..+|. +...+...+.++.+.|++++|.+.++++++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666666666666666665 555666666666666666666666666554
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.024 Score=55.35 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQI-----GCAPD---------NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
.-.+.|.+.|++..|...|++.... +..+. ..++..+..++.+.+++.+|++..++.++.+. +|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cch
Confidence 3456677778888888777776542 11110 01244444555555555555555555555221 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
...+.-+.+|...|+++.|+..|+++.+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555444
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.067 Score=50.33 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhH
Q 044815 220 CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTH 299 (675)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 299 (675)
+-|...|-.|...|...|+++.|..-|.+..+... ++...+..+-.++........-.++..+|+++.+.... |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 55888899999999999999999988888877532 35566666666665554445667788888888876433 66777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 300 TVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMIS 340 (675)
Q Consensus 300 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 340 (675)
..|...+...|++.+|...|+.|++.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l---p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL---PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC---CCCCchHHHHH
Confidence 777888888899999999888887643 33334444443
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.11 Score=47.04 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=101.9
Q ss_pred CChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 044815 147 GNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSY 226 (675)
Q Consensus 147 ~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 226 (675)
.+|+.|...|.....+|....+++.|...+.+..+. ...+...|. ....++.|.-+.+++.+. +--+..|
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 355556666666666666666777666666655421 122222222 122344455555555443 1123334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---C--CCCChhhHHH
Q 044815 227 KLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK---G--WKPNVYTHTV 301 (675)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ 301 (675)
+-....|...|..+.|-..+++.-+. .. ..+.++|++++.+.... + ...-...+..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~----------------le---nv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA----------------LE---NVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH----------------hh---cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 55556777777777776666654332 00 03455555555543221 1 0111234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHH
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVR----SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQG---LLPNTNTYTSLI 374 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~li 374 (675)
+.+.+.+..++++|-..|.+... -.....--..|-..|-.+.-..++..|.+.++.--+.+ -.-+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 56667777777777655544211 00000011123333334444556666666666643322 112344555666
Q ss_pred HHHHhcCCHHHHHHH
Q 044815 375 YGHCKVGNFERAYDL 389 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~ 389 (675)
.+| ..|+.+++.++
T Consensus 236 ~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKV 249 (308)
T ss_pred HHh-ccCCHHHHHHH
Confidence 555 34555555444
No 220
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.75 E-value=0.0034 Score=40.87 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
.+|..++..|.+.|++++|+++|+++++..|+ |...+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 35778889999999999999999999999998 8888877764
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.26 Score=48.85 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=20.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.+++.+..-.|+.++|.+.+++|....+
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 5666666777777777777777776654
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.65 E-value=0.0064 Score=45.72 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=17.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
++..++.++...|++++|+++++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666666666666666543
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.62 E-value=0.0018 Score=39.23 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 044815 631 FFHKLLGKDQNVDRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
+|+++++.+|+ |...|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPN-NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788999999 99999999999999999999863
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.62 E-value=0.65 Score=46.13 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
|-..+.+++.++.-.|++++|.+.+++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 344555666666666666666666666665
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.068 Score=46.02 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
..++..+...|++++|...+++++..+|- |...|..++.+|...|+..+|.+.++++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444455555555555555555555555 55555555555555555555555555554
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.48 E-value=0.72 Score=44.47 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHH--
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITAG-----LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ----IGCAPDNITY-- 545 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~-- 545 (675)
++..++...+.++++.+.|+.+.+.. ......++-.|...|.+..++++|.-+..+..+ .++..-..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35555566666777777776665421 112345667777777777777777766655433 1211111122
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 546 ---GALISGLCKQSKLDEACQFYESMIG----KGISPCE-VTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 546 ---~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
-.+.-++...|+...|.+..++..+ .|-.+.. .....+++.|...|+.|.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2244466777887777777777654 3433322 23345777888888888888777764
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=96.45 E-value=0.26 Score=42.25 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=54.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 480 AAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLD 559 (675)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 559 (675)
.-+...|++++|..+|.-+.-.++ .+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 334566777777777776665543 345556666666666677777777776654432 123333444556666777777
Q ss_pred HHHHHHHHHHh
Q 044815 560 EACQFYESMIG 570 (675)
Q Consensus 560 ~A~~~~~~~~~ 570 (675)
.|+..|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776666
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.02 Score=55.91 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCC
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGK-----GISP---------CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLW 608 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 608 (675)
...-.+.|.+.|++..|..-|++++.. +..+ -...+..|+.+|.+.+++.+|++..+++.. +++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 334566789999999999999997642 2222 113456788889999999999999988765 457
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhH-HHHHHHHHHhcc
Q 044815 609 IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYAL-FSDLSQRIAEGI 674 (675)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 674 (675)
.....--+.+|...|.++.|+..|+++++..|. |...-..|+..--+..++.+ ..++|..+..++
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777888889999999999999999999999998 87777777766655555444 477888877665
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.37 E-value=0.47 Score=45.68 Aligned_cols=163 Identities=14% Similarity=0.047 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHH
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITA-GLFP---TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCA-PD----NITY 545 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~ 545 (675)
|..+..++-+..++.+++.+-..-... |..| .-....++..++.-.+.++++++.|+...+.... .| ...|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444444444444333322 2222 1123345667777788899999999887653211 12 2478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCChhh-
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGK----GISPCE-----VTRVTLAYEYCKQGDSATAMIILESLDK----KLWIRT- 611 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~- 611 (675)
..|...|.+..++++|.-+..++.+. ++..-. ...+.+.-+|...|.+.+|.+..++..+ .+|..+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 88999999999999999888776642 322111 2334566788899999999998888654 345444
Q ss_pred ---HHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 612 ---VNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 612 ---~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
...+++.|...|+.|.|..-|+++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 46788999999999999999987654
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=2 Score=45.76 Aligned_cols=112 Identities=9% Similarity=-0.052 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHcc
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (675)
.+.+--+.-+...|+..+|.++-.+.. -||...+..-+.++...+++++-.++-+.. ..+.-|.-++.+|.+.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk---ksPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK---KSPIGYLPFVEACLKQ 757 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---CCCCCchhHHHHHHhc
Confidence 344445556667888899888877663 367777777788899999998765554443 3366788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 623 KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
|+.+||.+++-++-.. . -...+|.+.|++.+|.+..-+-
T Consensus 758 ~n~~EA~KYiprv~~l-------~--ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL-------Q--EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred ccHHHHhhhhhccCCh-------H--HHHHHHHHhccHHHHHHHHHHh
Confidence 9999999998764221 1 4667888999999988876543
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.29 E-value=1.2 Score=43.18 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=90.3
Q ss_pred cChhHHHHHHHHhhhCC-CC-----cchhhhHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044815 111 AGSMVALSFFYWAIGFA-KF-----RHFMRLYIVCATSLISNG-NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNG 183 (675)
Q Consensus 111 ~~~~~al~~f~~~~~~~-~~-----~~~~~~y~~~~~~l~~~~-~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 183 (675)
++.+.|-.+|..+.... .. ....+.+..+|..+.+.+ +++.|...++...+.+-..+ .+...+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~----------~~~~~~ 76 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG----------KMDKLS 76 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh----------hccccC
Confidence 45556666666654322 11 112334455666666666 77777666554433322211 111221
Q ss_pred CC---CCHHHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCC
Q 044815 184 LP---LITSTLNRVVGIACELGLVE---YAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILD 257 (675)
Q Consensus 184 ~~---~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 257 (675)
.. .-..++..++.+|...+..+ +|.++++.+... ++-.+..+-.-+..+.+.++.+++.+.+.+|...- ...
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~ 154 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHS 154 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccc
Confidence 11 11246777788888877654 556666666443 22235556666777777889999999999998762 212
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC
Q 044815 258 NATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPN 295 (675)
Q Consensus 258 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (675)
...+...+..+..... .....+...++.+....+.|.
T Consensus 155 e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred cchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 3334444433322110 234455555555554434333
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.9 Score=41.81 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----H
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGAL-----I 549 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----~ 549 (675)
-+.++..+.-.|.+.-....+.+.++...+.++.....|+..-.+.|+.+.|...|++..+..-..|..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 45566666777888889999999999876778888899999999999999999999987764334444444433 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
..+.-++++..|...+.+..+.+-. |....+.-+.+..-.|+..+|++.++.+...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456678899999999998874322 3444455555556679999999999998764
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.27 E-value=1.2 Score=45.05 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=79.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP---DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE--VT 579 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~ 579 (675)
....+|..++..+.+.|+++.|...+.++...+... +......-+..+-..|+..+|...++..++..+..+. ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345577778888888888888888888877643111 2333444555667778888888888887763222110 00
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHhhCCChhhHHHHHHHHHcc------CCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 580 RVTLAYEYCKQGDSATAMII-LESLDKKLWIRTVNTLIRKLCSE------KRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
...+...+.. ..+..... ............+..++.-.... +..+++...|+++.+..+. ....|..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-WEKAWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence 0111100000 00000000 00000000011223333333333 7788888888888888877 6667777777
Q ss_pred HHHhc
Q 044815 653 ACYES 657 (675)
Q Consensus 653 ~~~~~ 657 (675)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 66543
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=0.087 Score=48.95 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-----CChhhHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISP--CEVTRVTLAYEYCKQGDSATAMIILESLDKK-----LWIRTVNTLI 616 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~ 616 (675)
.|+.-+. +.+.|++.+|...|...++....- ....++.|+.++...|++++|..+|..+.+. .-+..+--|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5665554 446777888888888888753221 2356777888888888888888888887652 1345667777
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
....+.|+.++|...|+++++.-|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 7888888888888888888888776
No 235
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.21 E-value=2.3 Score=45.76 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=50.7
Q ss_pred HhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 044815 343 CKEEKMNRAEMLLERMKE-------QGLLPNTNTYTSLIYGHCKVG-----NFERAYDLMDLMGKEGCTPNIYAYNAIID 410 (675)
Q Consensus 343 ~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 410 (675)
....+.+.|+..|+.+.+ .| .......+..+|.+.. +.+.|..++....+.| .|+.... +..
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~ 333 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYL--LGV 333 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHH--HHH
Confidence 345566666666666554 44 2234455566665532 6788999999988887 3444433 333
Q ss_pred HHHh---cCCHHHHHHHHHHHHhCCC
Q 044815 411 GLCK---KGRVQEAYELLKKAFQREL 433 (675)
Q Consensus 411 ~~~~---~g~~~~A~~~~~~~~~~~~ 433 (675)
.+.. ..+...|.++|....+.|.
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCC
Confidence 3332 2356778888877776653
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.084 Score=49.06 Aligned_cols=94 Identities=17% Similarity=0.055 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV--DRVSLAALKN 652 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 652 (675)
.+..+..+.+.|++.+|...|....+. | ....+..|+..+...|++++|...|..+.+.-|+- -+..+..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566677788999999999999997764 2 24467789999999999999999999998876531 3578999999
Q ss_pred HHHhcCchhHHHHHHHHHHhc
Q 044815 653 ACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 653 ~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+..+.|+.++|...|+++.++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.17 E-value=0.43 Score=48.14 Aligned_cols=145 Identities=8% Similarity=-0.009 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HhHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 044815 487 KMKESEKFFQEAITA-GLFPT-KETYTSMICGYLR---------DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ 555 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 555 (675)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++..+.+ .-|......+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788888888822 23343 4556665555432 223456777777777754 44677777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC---hhhHHHHHHHHHccCCHHHHHH
Q 044815 556 SKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK-KLW---IRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
++++.|...|++... +.||. .+++..+....-.|+.++|.+.+++... .|. .......++.|+.. ..++|+.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 889999999999888 66764 5666777778888999999998888444 332 22334444455544 5777887
Q ss_pred HHHHH
Q 044815 631 FFHKL 635 (675)
Q Consensus 631 ~~~~~ 635 (675)
+|-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 77653
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.17 E-value=1.1 Score=41.72 Aligned_cols=222 Identities=19% Similarity=0.140 Sum_probs=137.1
Q ss_pred cCCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 380 VGNFERAYDLMDLMGKEGCT-PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR-ELQADKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~ 457 (675)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666665554321 12566667777777778888887777776642 23445556666666777777777888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 458 GLFCRMVKAGLNPDIHAYTTLIA-AFCRQKKMKESEKFFQEAITAGL--FPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 458 ~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+++...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777777654332 122222222 67777888888888887755221 1233344444444566777888888888777
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 535 QIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 535 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
... .. ....+..+...+...++++.|...+....+ ..|+ ...+..+...+...|..+++...+.+...
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 642 22 255666677777777778888888887776 3333 33444455555566667777777776655
No 239
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.16 E-value=1.5 Score=43.12 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
..|.-+...|+...|.++-.+.. -|+-..|...+.+++..+++++-.++-.. ...+..|..++..|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 33444455666666665554442 35666666666777776766665554321 223456666666666677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKF 494 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 494 (675)
+..+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 766666665551 1 13445566666666666554
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.13 E-value=1.1 Score=41.42 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 044815 257 DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGW--KPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHT 334 (675)
Q Consensus 257 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 334 (675)
-...|+..+..+.+ |++++|.+.|+.+....+ +-...+.-.++-++.+.+++++|+..+++.++..+-.||. .
T Consensus 34 ~~~LY~~g~~~L~~----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 34 ASELYNEGLTELQK----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 33445555555444 678888888888776521 1124455666777788888888888888888776655554 3
Q ss_pred HHHHHHHHH
Q 044815 335 YTAMISGYC 343 (675)
Q Consensus 335 ~~~li~~~~ 343 (675)
|-..|.+++
T Consensus 109 Y~~YlkgLs 117 (254)
T COG4105 109 YAYYLKGLS 117 (254)
T ss_pred HHHHHHHHH
Confidence 444444444
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.13 E-value=0.13 Score=44.28 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHH
Q 044815 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA-----RGVCADASS 225 (675)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 225 (675)
.+..++..+...|++++|......+.... |.+...+..++.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33445555666666666666666666654 45566666666666666666666666666532 355555544
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=96.05 E-value=0.14 Score=51.43 Aligned_cols=148 Identities=9% Similarity=0.009 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044815 522 NISSAVKYFQRMNQ-IGCAPD-NITYGALISGLCK---------QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQ 590 (675)
Q Consensus 522 ~~~~A~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 590 (675)
..+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.+.-++.++.+- -|......++.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 35788999999882 235676 4456555554321 2345677888888888442 2567777888888889
Q ss_pred CCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHhcCchhHHHHHH
Q 044815 591 GDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAA-LKNACYESNKYALFSDLS 667 (675)
Q Consensus 591 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~ 667 (675)
|+.+.|...|++... +....+|...+..+.-.|+.++|.+.++++++..|.--...... .++.|+.. ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 999999999999765 45677888888888999999999999999999988633333333 33355554 567888877
Q ss_pred HHHH
Q 044815 668 QRIA 671 (675)
Q Consensus 668 ~~~~ 671 (675)
-|-.
T Consensus 431 ~~~~ 434 (458)
T PRK11906 431 YKET 434 (458)
T ss_pred hhcc
Confidence 6543
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.04 E-value=0.31 Score=51.07 Aligned_cols=174 Identities=18% Similarity=0.167 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHH----cCCHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK------ETYTSMICGYLR----DGNISS 525 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~ 525 (675)
...+|.-+... +|| .+..++....-.|+-+.+.+.+.+..+.+-.-.+ -.|...+..++. ..+.+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 344 3456667777779999999999887764311121 123344444432 446778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhC--CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 526 AVKYFQRMNQIGCAPDNITYGAL-ISGLCKQSKLDEACQFYESMIGK--GIS-PCEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~--g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
|.++++.+.+. -|+...|... .+.+...|++++|++.|+++.+. ..+ .....+..+++.+.-.+++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 88888888874 5776665543 34466788999999999977642 111 123555678888888888888888888
Q ss_pred HHhhC-CChhhHHHHHHH--HHccCCH-------HHHHHHHHHH
Q 044815 602 SLDKK-LWIRTVNTLIRK--LCSEKRV-------GMAALFFHKL 635 (675)
Q Consensus 602 ~~~~~-~~~~~~~~l~~~--~~~~g~~-------~~A~~~~~~~ 635 (675)
.+.+. .+..++...+.+ +...|+. ++|.++++++
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 88764 444443333333 4457777 6666666654
No 244
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.35 Score=42.41 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAPDNITY--GALISGLCKQSKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQGDSATAMIIL 600 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 600 (675)
+.....+++....-+.....+ ..+...+...|++++|..-++..+..-..-+ ...-..|+......|.+|+|++.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455555666553211111122 2345567889999999999998875321111 122234677788899999999999
Q ss_pred HHHhhCCChhhH-HHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 601 ESLDKKLWIRTV-NTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 601 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+....+.+...+ ..-++++...|+-++|+.-|+++++.+..
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 988877655544 45577889999999999999999988744
No 245
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.04 E-value=2.3 Score=44.21 Aligned_cols=133 Identities=9% Similarity=0.055 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS-SYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
+...+..|+.---.....+.+..+++.+... -|-.. -|.....-=.+.|..+.+.++|++-+. |+......|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3344544444333333445566666666543 23222 233333344556777777777777665 3444555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 266 TAFCDKGFRGSIKQAFELLEEMVRK-GWK-PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.-++.. .|+.+.....|+..... |.. .....|...|..-..+++......+++++++
T Consensus 121 ~f~~n~--~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 121 AFLKNN--NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhcc--CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 555443 36666666666665543 211 1334455566655666666676677666654
No 246
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.91 Score=38.96 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=52.5
Q ss_pred HHHcCCHHHHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 044815 233 YCRMGRVTEADRWLSAMLDRGAILDNA-TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGW 311 (675)
Q Consensus 233 ~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 311 (675)
....|+...|...|++.-.....|-.. -...|=.+|.-. +.|.+++.....+-+...+-+-....-..|.-+-.+.|+
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv-D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV-DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 344555555555555554443333332 111222222221 136677666666665554444445555667777778888
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 044815 312 TEKAFRLFLKLVRSDNYK 329 (675)
Q Consensus 312 ~~~A~~~~~~~~~~~~~~ 329 (675)
+.+|.+.|..+....+-+
T Consensus 183 ~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 183 FAKAKSWFVQIANDAQAP 200 (221)
T ss_pred hHHHHHHHHHHHccccCc
Confidence 888888888876644433
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=3.1 Score=44.98 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhc
Q 044815 197 IACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDK 271 (675)
Q Consensus 197 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 271 (675)
-+.+.|++++|...|-+-+.. +.| ..+|.-|....+..+-..+++.+.+.|.. +...-..|+..|.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHh
Confidence 334455555555554443321 111 12333344444444455555555555443 333344455555554
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.92 E-value=0.15 Score=42.57 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKKL-----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
-+....+.|++++|.+.|+.+..+- ...+-..++.+|.+.|++++|...+++.+++.|
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3334444444444444444444321 111223344445555555555555555555544
No 249
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.89 E-value=2.1 Score=42.65 Aligned_cols=82 Identities=7% Similarity=0.069 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA 232 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 232 (675)
.-.|-++|+-|...|.+++..+++++|..- .|.-..+|...+..=....++..++.+|.+..... .+...|...+.-
T Consensus 42 I~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~Y 118 (660)
T COG5107 42 ILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEY 118 (660)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHH
Confidence 345567899999999999999999999764 34556778887877777889999999999988763 467778877775
Q ss_pred HHHcC
Q 044815 233 YCRMG 237 (675)
Q Consensus 233 ~~~~g 237 (675)
..+.+
T Consensus 119 IRr~n 123 (660)
T COG5107 119 IRRVN 123 (660)
T ss_pred HHhhC
Confidence 54433
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.5 Score=41.49 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhh-----HHHH
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEV--TRVTLAYEYCKQGDSATAMIILESLDKKLWIRT-----VNTL 615 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~l 615 (675)
..|..++.... .+.+ +.....+.+....-...-. ....++..+..+|++++|..-++.....+.... --.|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34555555543 3333 4455556665532111111 223356778899999999999998765432222 2457
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.+.....|.+|+|+..++...+.+. .......-++++...|+.++|+..|+++++.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 7888999999999999988655544 3556777899999999999999999999876
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.73 E-value=0.085 Score=43.60 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 044815 222 DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTV 301 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (675)
|..++..+|.++++.|+.+....+++..-. +.++.. ... +. --......|+..+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~---~~---------~~~~spl~Pt~~lL~A 57 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKE---GD---------YPPSSPLYPTSRLLIA 57 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------ccc---Cc---------cCCCCCCCCCHHHHHH
Confidence 345677778888888888877777765543 222210 000 00 1122345788888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK 344 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 344 (675)
++.+|+..|++..|+++.+...+..+++.+..+|..|+.-...
T Consensus 58 Iv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 58 IVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888888888876554
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=1.6 Score=39.86 Aligned_cols=204 Identities=18% Similarity=0.235 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 044815 335 YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK 414 (675)
Q Consensus 335 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 414 (675)
|..-..+|-..+++++|...+.+..+. ...|...| -....++.|..+.+++.+. +--+..|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 334444555566666666655554421 11111111 1122344555555555543 1223345555666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCCHH
Q 044815 415 KGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKA---GL--NPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~~~ 489 (675)
+|..+-|-..+++.-+ ..+.-++++|++++++.... +- .--...+..+...+.+..+++
T Consensus 104 ~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 6666666655555432 12233444444444443221 00 000112333344455555555
Q ss_pred HHHHHHHHHHH----CCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 044815 490 ESEKFFQEAIT----AGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIG--C-APDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 490 ~A~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+|-..+.+-.. ..-.++ -..|-..|-.|.-..++..|.+.++.--+.+ . .-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 55544433221 000111 1234455555666667777777777643321 1 12345666666665 45666665
Q ss_pred HHHH
Q 044815 562 CQFY 565 (675)
Q Consensus 562 ~~~~ 565 (675)
..++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 4443
No 253
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=3.6 Score=43.94 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 044815 217 RGVCADASSYKL-----MVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG 291 (675)
Q Consensus 217 ~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 291 (675)
.|++.+..-|.. +|.-+...+.+..|.++-..+...-.. +...|.....-+.+..+ ..-+++.+.+++-.+..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d-~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSD-KMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccC-ccchHHHHHHHHHhccc
Confidence 466666655543 566777888899999888777543222 24556666655555432 22233333333333222
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 292 WKPNVYTHTVLIDGLCKKGWTEKAFRLFLK 321 (675)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 321 (675)
. .....|..+.+.-..+|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3455677788888889999999888643
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=1.6 Score=41.30 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
....|+..+|...|........ -+...--.++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3344555555555555554322 123334444555555555555555555443
No 255
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.66 E-value=0.062 Score=53.84 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=57.4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----ITYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
.+...++.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|++++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999988 45774 35888999999999999999999999984
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.59 E-value=1 Score=36.74 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+..+.+.|+-|.-.+++..+.+ +-++++..+..++.+|.+.|+..++.+++.++.+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444555555555555555544 3334566666666666666666666666666554
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.58 E-value=5.5 Score=45.05 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKE----TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK 554 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 554 (675)
++.--+.|.+.+|..++. |+.. .|.+...-+...+.+++|.-+|+..-+ ....+.+|..
T Consensus 915 ~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHH
Confidence 333344555555555542 4443 344444445566777777776665422 2234556777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPCE--VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.|++.+|+.+..++.... +. .+-..|+..+...++.-+|-++..+....+ .--+..||+...+++|....
T Consensus 978 ~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~-----~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSDP-----EEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred hccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH-----HHHHHHHhhHhHHHHHHHHH
Confidence 788888887777764311 11 122556667777777777777766654432 22344566666777777665
Q ss_pred HHH
Q 044815 633 HKL 635 (675)
Q Consensus 633 ~~~ 635 (675)
...
T Consensus 1050 ~~~ 1052 (1265)
T KOG1920|consen 1050 SKA 1052 (1265)
T ss_pred Hhc
Confidence 544
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.57 E-value=2.5 Score=41.01 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 369 TYTSLIYGHCKVGNF---ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR 431 (675)
Q Consensus 369 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 431 (675)
++..++.+|...+.. ++|..+++.+.... +-.+.++..-++.+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555554443 33444444443332 112334434444444456666666666666554
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=1.9 Score=40.75 Aligned_cols=148 Identities=15% Similarity=0.088 Sum_probs=77.0
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCH
Q 044815 198 ACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSI 277 (675)
Q Consensus 198 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 277 (675)
....|++.+|...|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+....++.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 445666666666666666542 2233444556666677777777777666654432111111111112222222111233
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 044815 278 KQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRA 351 (675)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 351 (675)
.+.. ...... +-|...-..+...+...|+.++|++.+-.+++++.-.-|...-..++..+.-.|..+.+
T Consensus 223 ~~l~---~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 223 QDLQ---RRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHH---HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 2222 222221 12566666777788888888888888777776544344555556666666555544333
No 260
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.23 E-value=0.29 Score=40.48 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHH
Q 044815 363 LLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGK-EGCTPNIYAYNAIIDG 411 (675)
Q Consensus 363 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~ 411 (675)
..|+..+..+++.+|+..+++..|.++.+...+ .+++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445555555555555555555555555554432 2344444555555443
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.16 E-value=1.6 Score=45.74 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSM-ICGYLRDGNISSAVKYFQRMNQIG--C-APDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
.+.+.|.+++..+.+. .|+...|... .+.+...|+.++|++.|++..... . +.....+--+.-++.-..++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556666666666654 2555444433 233445666666666666544210 0 01122333344455666677777
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCH-------HHHHHHHHHHh
Q 044815 562 CQFYESMIGKGISPCEVTR-VTLAYEYCKQGDS-------ATAMIILESLD 604 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~ 604 (675)
.+.|.++.+..-- ....| +..+.++...|+. ++|.++|.++.
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777776653211 12222 2334445556666 66666666543
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.11 E-value=7.7 Score=43.96 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=43.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKE--TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS 556 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 556 (675)
+.+|..+|+|++|..+..++... .+.. +-..|+.-+...+++-+|-++..+... . ....+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHh
Confidence 44555555555555555544321 1111 124555666667777777666666543 1 123344566667
Q ss_pred CHHHHHHHHHHHH
Q 044815 557 KLDEACQFYESMI 569 (675)
Q Consensus 557 ~~~~A~~~~~~~~ 569 (675)
.+++|.++.....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777665544
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.11 E-value=2.8 Score=38.89 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 482 FCRQKKMKESEKFFQEAITAGL--FPTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
-.+.|++++|.+.|+.+....+ +-...+--.++.++.+.+++++|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456778888888877775521 122445556666777888888888888877663
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.00 E-value=1.9 Score=36.62 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD 520 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 520 (675)
++..+...+.......+++.+...+. .+....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 34444444455555555555544432 3444555555555443
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.99 E-value=0.44 Score=38.62 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC---Ch---hhHHHHHHHHHcc
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKKL---WI---RTVNTLIRKLCSE 622 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~---~~~~~l~~~~~~~ 622 (675)
-++...|+.+.|++.|.+.+. +-| ....|+.-+.+|.-.|+.++|++-+++...-. .. ..|-.-+..|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356788999999999999888 444 45678888889999999999998888865521 11 1233344456778
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 044815 623 KRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~ 641 (675)
|+.+.|..-|+.+-+.|..
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8999999999988888865
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.94 E-value=2.6 Score=42.96 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLF-PTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
..+..++-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555666666666666666653221 1233455566666666666666666666543
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.89 E-value=1.7 Score=35.35 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=72.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH---HHHHHcCC
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMV---VAYCRMGR 238 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~ 238 (675)
.++..|+.+.|++.|.+.+.. .|...+.||.-..++.-+|+.++|+.=+++..+..-..........+ ..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 567889999999999998886 36788999999999999999999999999988743233333333333 35677899
Q ss_pred HHHHHHHHHHHhHCCC
Q 044815 239 VTEADRWLSAMLDRGA 254 (675)
Q Consensus 239 ~~~A~~~~~~m~~~g~ 254 (675)
-+.|..=|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998988887763
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.77 E-value=2.1 Score=43.61 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
..+..++.+.|+.++|++.+++|++....- .......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345555566666666666666665422111 12344556666666666666666666543
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.72 E-value=0.059 Score=33.11 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+|..|+.+|.+.|++++|.+++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777777777777754
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.23 Score=43.54 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-ChhhHHHHHHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPCE------VTRVTLAYEYCKQGDSATAMIILESLDKK-L-WIRTVNTLIRKL 619 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~ 619 (675)
=.+-+.+.|++++|..-|.++++. -|.. ..|..-+.++.+.+.++.|+.-..+...- | .....-.-+.+|
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 345577889999999999999883 3322 22333456777888888888877765542 2 222233334567
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
-+..++++|++-|+++++.+|. ....-...+..
T Consensus 179 ek~ek~eealeDyKki~E~dPs-~~ear~~i~rl 211 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS-RREAREAIARL 211 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc-hHHHHHHHHhc
Confidence 7888999999999999999887 44444444433
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.9 Score=43.35 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=112.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCH
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAY----TTLIAAFCRQKKM 488 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~ 488 (675)
-..|...+|-..++++++. .+.|...++..=.++...|+.+.-...++++... ..+|...| ..+..++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578888888889998875 6778888888888999999999988888888765 24444333 3344556688999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHHhcCCHHHHHHH
Q 044815 489 KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-D---NITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 489 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~---~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
++|++.-++..+.+. -|.-.-.++...+-..|++.++.++..+-... .+- + ..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999988887653 35555667778888899999999987765431 111 1 11122233345567899999999
Q ss_pred HHHHHhCCCCC
Q 044815 565 YESMIGKGISP 575 (675)
Q Consensus 565 ~~~~~~~g~~p 575 (675)
|+.-+-..+.-
T Consensus 270 yD~ei~k~l~k 280 (491)
T KOG2610|consen 270 YDREIWKRLEK 280 (491)
T ss_pred HHHHHHHHhhc
Confidence 98765543443
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.45 E-value=2.3 Score=34.79 Aligned_cols=62 Identities=24% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL 433 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 433 (675)
...++.....|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++.++-+.|.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334455556666666666666655432 45556666666666666666666666666665553
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=2.1 Score=36.80 Aligned_cols=135 Identities=12% Similarity=0.125 Sum_probs=89.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPCEV---TRVT 582 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ 582 (675)
...|..-+. +.+.++.++|+.-|..+.+-|...-+. ............|+...|...|++.-.....|-.. ....
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 456778899999999998866543222 22233445678899999999999988754444322 1122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKKLWI---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
-+..+...|.+++.....+.+....++ ..-..|+-+-.+.|++..|.+.|+++......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 345567788888888877777654332 223567777788999999999998887744443
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.43 E-value=2.7 Score=35.64 Aligned_cols=127 Identities=11% Similarity=0.065 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK 589 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 589 (675)
...++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. . .+......++..+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHH
Confidence 4567777888889999999999998876 356778899999998764 3445555552 1 122223345566677
Q ss_pred cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 590 QGDSATAMIILESLDKKLWIRTVNTLIRKLCSE-KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
.+.++++.-++.++.. +...+..+.+. ++++.|++++.+. . ++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~-----~-~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ-----N-NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC-----C-CHHHHHHHHHHHHc
Confidence 7888888888877643 22333444444 7889998888762 2 66788877776654
No 275
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.40 E-value=4.2 Score=37.68 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 381 GNFERAYDLMDLMGKEGCTPNIY---AYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
.+.++|+.-|.+..+..-....+ ....++..+.+.+++++.++.+.+++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 35566666666555432122222 22334555555555555555555543
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.39 E-value=1.2 Score=46.12 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=71.3
Q ss_pred HhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 343 CKEEKMNRAEMLLERMK-EQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEA 421 (675)
Q Consensus 343 ~~~~~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 421 (675)
.-.++++++.++.+.-. -..+ +..-.+.++..+.+.|..+.|+++-..-. .-.+...+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 34566666666654111 1011 13345566666666666666665543211 123344556666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044815 422 YELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA 501 (675)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 501 (675)
.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 655432 23455666666666666666666665555432 344444555556655555555554443
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 502 GLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 502 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
|- ++....++...|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 33334444445555555555443
No 277
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.37 E-value=1.7 Score=44.84 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=100.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044815 304 DGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNF 383 (675)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 383 (675)
....-.|+++++.+....-.--..+ +..-.+.++..+-+.|..+.|+.+-..-.. -.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 4455678888888776521111111 244577788888888888888887544322 23455678998
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 384 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
+.|.++.++. .+...|..|.+...+.|+++-|.+.|++..+ +..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 8888765442 3677899999999999999999998887532 566777788888888877777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 464 VKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQE 497 (675)
Q Consensus 464 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 497 (675)
...| -++....++.-.|++++..+++.+
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7665 145555566666888887777654
No 278
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.27 E-value=10 Score=41.58 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=87.1
Q ss_pred HhcCCHHHHHHHHHHHhhcCC-CC-----C--HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGC-TP-----N--IYAYNAIIDGLCKKGRVQEAYELLK--------KAFQRELQADKITYT 441 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~-~~-----~--~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~ 441 (675)
+-.+++..|...++.|.+..- .| . ...+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 345777778887777765311 11 1 2222223333445678888888886 333444444444433
Q ss_pred HH--HHHHHh--cCCHHH--HHHHHHHHHHc-CCCC--CHHHHH-HHHHHHHhcC--CHHHHHHHHHHHHHCC--CCCC-
Q 044815 442 IL--LSEHLK--QAETKQ--ALGLFCRMVKA-GLNP--DIHAYT-TLIAAFCRQK--KMKESEKFFQEAITAG--LFPT- 506 (675)
Q Consensus 442 ~l--i~~~~~--~~~~~~--A~~~~~~m~~~-~~~p--~~~~~~-~li~~~~~~g--~~~~A~~~~~~~~~~~--~~~~- 506 (675)
.+ +-.+.. .....+ +.++++.+... .-.| +..++. .++.++.... ...++...+.+..+.- -..+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 31 112222 222223 66666665542 1122 222333 3333332211 1224444443322211 0111
Q ss_pred ---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC--HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 507 ---KETYTSMICGYLRDGNISSAVKYFQRMNQI-GCAPD--NITYG-----ALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 507 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~--~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..+++.+...+. .|+..+..+........ .-.|| ...|. .+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 122333333333 67766655444432221 11222 33453 344457778999999888777654
No 279
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.20 E-value=4 Score=36.64 Aligned_cols=188 Identities=12% Similarity=0.013 Sum_probs=92.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 447 HLKQAETKQALGLFCRMVKAGLNPD-IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 447 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
|-..|-+.-|.--|.+... +.|+ +.+||.|.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 4445555555555555544 3444 55677777777777888888888877777543222222222222 224567777
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 044815 526 AVKYFQRMNQIGC-APDNITYGALISGLCKQSKLDEACQFY-ESMIGKGISPCEVTRVT-LAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 526 A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 602 (675)
|.+-+.+.-+.+. .|-...|-.+.. ..-++.+|..-+ ++... . |..-+.. ++..|. |++.+ ..++++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~--~--d~e~WG~~iV~~yL--gkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK--S--DKEQWGWNIVEFYL--GKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh--c--cHhhhhHHHHHHHH--hhccH-HHHHHH
Confidence 7766665554321 111222322221 233455555433 23222 1 2222222 222222 22211 112233
Q ss_pred HhhC--C-------ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 044815 603 LDKK--L-------WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLA 648 (675)
Q Consensus 603 ~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 648 (675)
+... . -..+|-.++.-+...|+.++|..+|+-++..++- |.+-+.
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy-nfVE~R 275 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY-NFVEHR 275 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH-HHHHHH
Confidence 2221 1 1235666777777777888888877777766654 444433
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=4.2 Score=39.04 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=57.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHH
Q 044815 165 EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADA----SSYKLMVVAYCRMGRVT 240 (675)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 240 (675)
.+|++.+|...++++++. +|.|...+...-.++.-.|+.+.-...++++...- .+|. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555555555543 35555555555556666666666666666554321 1222 22222233445556666
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 044815 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEE 286 (675)
Q Consensus 241 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 286 (675)
+|.+.-++..+.+. .|...-.++.+.+-.. ++++++.+.+.+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~---~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMN---GRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhc---chhhhHHHHHHh
Confidence 66666555554432 2444444454544444 455555555443
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.15 E-value=19 Score=44.28 Aligned_cols=153 Identities=8% Similarity=0.035 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 301 VLIDGLCKKGWTEKAFRLFLKLVR-SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK 379 (675)
Q Consensus 301 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 379 (675)
.+..+-.+++.+.+|+..+++-.. .........-|..+...|...+++|....+...-.. +...+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 455566788899999988877310 000012233455556689999999998888764222 22222 33446778
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 044815 380 VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYT-ILLSEHLKQAETKQALG 458 (675)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~ 458 (675)
.|++..|...|+.+.+.+ ++...+++-++......|.++......+-...+. .+....++ .-+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 4447778878887778888888877666555432 22233333 23344456677776655
Q ss_pred HHH
Q 044815 459 LFC 461 (675)
Q Consensus 459 ~~~ 461 (675)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 543
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.14 E-value=0.59 Score=44.30 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHHHHH
Q 044815 154 EVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA-----RGVCADASSYKL 228 (675)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 228 (675)
.++..++..+...|+++.+...++++.... |-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445566666777777777777777776665 55666777777777777777777777766653 455555555544
Q ss_pred HHHH
Q 044815 229 MVVA 232 (675)
Q Consensus 229 li~~ 232 (675)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.08 E-value=1.1 Score=41.61 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHH
Q 044815 185 PLITSTLNRVVGIACE-----LGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNA 259 (675)
Q Consensus 185 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 259 (675)
.-|-.+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+=+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 3456677777766643 3556777777788888888888888888887664322 122221
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 044815 260 TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWT 312 (675)
Q Consensus 260 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (675)
+....-.|= .+-+-+++++++|...|+.||-.+-..|+.++.+.|-.
T Consensus 128 -fQ~~F~HYP-----~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 -FQKVFLHYP-----QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -HHHHHhhCc-----hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222221 24456788999999999999999999999998887754
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.96 E-value=0.099 Score=31.50 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=20.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+|..++..+...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4666666777777777777777777666553
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.91 E-value=0.11 Score=31.29 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=17.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.|..++..+.+.|++++|++.|+++++..|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455556666666666666666666655543
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.82 E-value=0.52 Score=43.73 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 329 KPNVHTYTAMISGYCK-----EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK 379 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 379 (675)
..|..+|-+.+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3455566666655543 35566666777788888888888888888776543
No 287
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.76 E-value=13 Score=40.95 Aligned_cols=225 Identities=16% Similarity=0.055 Sum_probs=121.4
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 044815 378 CKVGNFERAYDLMDLMGKEGCTPNI-------YAYNAII-DGLCKKGRVQEAYELLKKAFQR----ELQADKITYTILLS 445 (675)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 445 (675)
....++++|..+..++...-..|+. ..++.+- ......|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3567889999888887653222221 1233322 2234578889999888877654 23345566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HH--HHHHHhcCC--HHHHHHHHHHHHHCC---C---CCCHhHHHH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYT---TL--IAAFCRQKK--MKESEKFFQEAITAG---L---FPTKETYTS 512 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~l--i~~~~~~g~--~~~A~~~~~~~~~~~---~---~~~~~~~~~ 512 (675)
+..-.|++++|..+..+..+..-..+...+. .+ ...+...|+ .++....|....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887766542222333332 22 223445663 333333343333220 0 012344555
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 044815 513 MICGYLRD-GNISSAVKYFQRMNQIGCAPDNI--TYGALISGLCKQSKLDEACQFYESMIGKGISP----CEVTRVTLAY 585 (675)
Q Consensus 513 li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~ 585 (675)
+..++.+. +...++..-++--......|-.. .+..++......|+.++|...++++......+ +-......+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55565552 12222222222222221112111 22356777888999999999999887643332 2222222222
Q ss_pred --HHHHcCCHHHHHHHHHH
Q 044815 586 --EYCKQGDSATAMIILES 602 (675)
Q Consensus 586 --~~~~~g~~~~A~~~~~~ 602 (675)
.....|+.+.|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23467888887777666
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.75 E-value=3.1 Score=40.41 Aligned_cols=130 Identities=15% Similarity=0.305 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCC-
Q 044815 277 IKQAFELLEEMVRKGWKPNVYTHTVLIDGLCK--K----GWTEKAFRLFLKLVRSDNYK--PNVHTYTAMISGYCKEEK- 347 (675)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~- 347 (675)
+++.+.+++.|.+.|+..+..+|-+....... . -...+|..+|+.|.+...+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44455566666666666555554442222222 1 12345666666665544322 233344444333 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcC-C--HHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 044815 348 ---MNRAEMLLERMKEQGLLPNTN--TYTSLIYGHCKVG-N--FERAYDLMDLMGKEGCTPNIYAYNAII 409 (675)
Q Consensus 348 ---~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g-~--~~~A~~~~~~m~~~g~~~~~~~~~~li 409 (675)
.+.+..+|+.+.+.|+..+.. ....++ +++... . ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iL-aL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHIL-ALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345566666666666655432 222222 222211 1 346667777777777776666655443
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.17 E-value=0.45 Score=45.37 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.+-|.++|++++|+..|...+. ..| |.+++..-..+|.+..++..|..-+..++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4445555666666666555444 234 555555555555555555555555554443
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.16 E-value=5.4 Score=34.73 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=14.8
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 044815 494 FFQEAITAGLFPTKETYTSMICGYLRDGNIS 524 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 524 (675)
+++.+.+.++.|+...|..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333444444455555555555555555433
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.05 E-value=0.18 Score=30.95 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=20.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788888889999999998888553
No 292
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.04 E-value=3.8 Score=34.43 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITA 501 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~ 501 (675)
..|+.++.+.+++++|...+++.++.
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.02 E-value=2.2 Score=40.59 Aligned_cols=75 Identities=15% Similarity=0.015 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLG-----KDQNVDRVSLAALK 651 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 651 (675)
++..++..+..+|+.+.+...++++.. +.+...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 445566677777777777777777655 23566777777777788877777777776543 56777666666555
Q ss_pred HH
Q 044815 652 NA 653 (675)
Q Consensus 652 ~~ 653 (675)
.+
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 54
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.90 E-value=5.4 Score=34.23 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 554 KQSKLDEACQFYESMIGKGISPCEVTRV-TLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.++.+++..++..+.- +.|...... .-++.+.+.|++.+|+.+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44555555555555555 444433332 234445555666666666665544
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.75 E-value=7.2 Score=35.10 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 369 TYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
||--+..-+...|+.++|..+|+-.+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4555555555666666666666655543
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.60 E-value=11 Score=36.84 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=38.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----c
Q 044815 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR----D 520 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 520 (675)
..+++..+...+......+ +......+...|.. ..+..+|.++|..+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4456666666666665533 12333333333332 2345556666655554432 1222223333332 2
Q ss_pred CCHHHHHHHHHHHHHCC
Q 044815 521 GNISSAVKYFQRMNQIG 537 (675)
Q Consensus 521 g~~~~A~~~~~~m~~~~ 537 (675)
.+..+|..++++..+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 24555555555555554
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.55 E-value=0.28 Score=29.35 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..|..++.++...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999863
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.09 E-value=0.35 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+|..++.++...|++++|...++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5788999999999999999999999986
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.09 E-value=3.1 Score=36.92 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 044815 152 AHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLIT--STLNRVVGIACELGLVEYAEEVFDEMCA 216 (675)
Q Consensus 152 a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 216 (675)
.+..+..+...|.+.|+.+.|++.|.++.+....+.. ..+..+++.....|++..+....++...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666777778888888888888887776444333 4566677777777777777777666544
No 300
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.03 E-value=0.55 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 044815 190 TLNRVVGIACELGLVEYAEEVFDEMCAR 217 (675)
Q Consensus 190 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 217 (675)
++..+...|.+.|++++|+++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.83 E-value=3.1 Score=36.77 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=69.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPD-----NITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYE 586 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 586 (675)
=.+-+.+.|++++|..-|.+.++. +++. .+.|..-..++.+.+.++.|+.-..+.++ +.|+. .....-+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 456678899999999999999885 4443 23566666788899999999999999998 44532 233334678
Q ss_pred HHHcCCHHHHHHHHHHHhhC
Q 044815 587 YCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~~ 606 (675)
|.+...+++|+.-|.++...
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999988763
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.71 E-value=0.66 Score=35.38 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
.=++.+-++.+...+.-|++....+.+.+|.+.+++..|.++++.+..|||
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 335566667777777778888888888888888888888888887776765
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.54 E-value=24 Score=38.58 Aligned_cols=63 Identities=8% Similarity=0.085 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHc
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK-------MNRAEMLLERMKEQ 361 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~ 361 (675)
...-.+|-.+.++|++++|.++..+... ........+-..+..|+...+ -++...-|++....
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3344677778888888888888744322 233444556666666655422 23444455555543
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.38 E-value=15 Score=35.80 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCC-
Q 044815 348 MNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK--VG----NFERAYDLMDLMGKEGC---TPNIYAYNAIIDGLCKKGR- 417 (675)
Q Consensus 348 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 417 (675)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...+|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677778888887777666553322222 11 25667778888877542 2344455555433 2233
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 418 ---VQEAYELLKKAFQRELQADK--ITYTILLSEHLKQAE--TKQALGLFCRMVKAGLNPDIHAYTTLI 479 (675)
Q Consensus 418 ---~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li 479 (675)
.+.+..+|+.+.+.|...+- ...+.++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34455555555555544322 222222222211111 335556666666666665555554443
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.32 E-value=0.77 Score=35.45 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
+..+-++.+...+.-|++....+.+.+|.+.+++.-|.++++.+..|||
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 5566677777888888888888888899999999999999988888876
No 306
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.20 E-value=20 Score=36.87 Aligned_cols=176 Identities=14% Similarity=0.155 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
|.....+++..+...-...-.+.+-.+|...| -+-..|..++.+|..+ ..++-..+|+++.+..+ .|.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44445555555555555555555555555543 3445555566666555 33555556665555321 12222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH--cCCHHHHHHHHHHHhhCC----ChhhHHHHHHHHHccC
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCK--QGDSATAMIILESLDKKL----WIRTVNTLIRKLCSEK 623 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g 623 (675)
-|- .++.+.+..+|.+++..=+.-.. .....+=.-+-. ..+.+..+.+...++... ....+..+-..|....
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 333 25555566666555542111000 000000000111 234444555555544421 2233444445555666
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
++++|++++..+++.+-+ |.-....++.
T Consensus 220 N~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 220 NWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred CHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 777777777766666655 5444444443
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.88 E-value=10 Score=33.03 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 044815 209 EVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMV 288 (675)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~ 288 (675)
+.+..+.+.+++|+...+..+|..+.+.|++.... .+...++-+|.......+-.+.. ....+.++=-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~-----~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN-----QYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc-----cChHHHHHHHHHH
Confidence 45555566778888888888888888888765544 44455666676666555544322 2334444444444
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044815 289 RKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERM 358 (675)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 358 (675)
++ =...+..++..+...|++-+|+++..+.... +......++.+..+.++...-..+++-.
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 0113556777888888888888876554221 1122233445554555544433444333
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.65 E-value=3.5 Score=36.61 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.+..+..-|++.|+.++|++.|.++.+....+.. ..+-.++......+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666666666777777766666664333332 2445566666666666666666665543
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.64 E-value=0.54 Score=29.74 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.++..|+.+|...|++++|.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777777777777777664
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.49 E-value=21 Score=35.93 Aligned_cols=66 Identities=3% Similarity=0.001 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP---TKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
....++..++..+.+.|.++.|...+..+...+... .....-.-+..+-..|+..+|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678889999999999999999999998754211 344455556677788999999999998877
No 311
>PRK09687 putative lyase; Provisional
Probab=89.75 E-value=20 Score=34.64 Aligned_cols=124 Identities=11% Similarity=0.026 Sum_probs=64.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS-KLDEACQFYESMIGKGISPCEVTRVTLA 584 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 584 (675)
+..+-...+.++.+.++ ++|+..+-.+.+ .+|...-...+.++.+.+ ....+...+..++. .++..+....+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555555555555 445555555554 244444444444555432 13345555555543 23444555566
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 585 YEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.++.+.|+ ..|...+-+..+.++ .....+.++.+.|.. +|...+.++.+..+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 66666666 345544444443333 223456666666664 57777777766554
No 312
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.69 E-value=30 Score=36.47 Aligned_cols=370 Identities=11% Similarity=0.070 Sum_probs=193.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHH
Q 044815 164 AEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIAC-ELGLVEYAEEVFDEMCAR-GVC-ADASSYKLMVVAYCRMGRVT 240 (675)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~ 240 (675)
.+.|..+.+.++|++-.. |++.+...|...+..+. ..|+.+.....|+..... |.. .+..-|...|.--..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 445556666666666554 25666666666665444 456777788888887762 221 24556888888778889999
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHc---C-CCCChhhHHHHHHHHHh-c
Q 044815 241 EADRWLSAMLDRGAILDNATLTLLITAFCDKGF------RGSIKQAFELLEEMVRK---G-WKPNVYTHTVLIDGLCK-K 309 (675)
Q Consensus 241 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~ 309 (675)
....+|++.++.. ...|+.....|.+.-. .-..+++.++-....+. + ..+.......-+.--.. .
T Consensus 169 ~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 9999999998752 2222222222222100 01223332222222110 0 00000111111100000 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C----CCCHHHHHHHHHHHHhcCC
Q 044815 310 GWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQG---L----LPNTNTYTSLIYGHCKVGN 382 (675)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~----~p~~~~~~~li~~~~~~g~ 382 (675)
+..+++.....+. ....-..+-......+....++.-...- + .++..+|..-+..-.+.|+
T Consensus 245 ~~l~~~~~~l~~~------------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~ 312 (577)
T KOG1258|consen 245 KSLTEEKTILKRI------------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD 312 (577)
T ss_pred chhhHHHHHHHHH------------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc
Confidence 1111111111110 0001111222222333333444433321 1 2245678888888888999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 383 FERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCR 462 (675)
Q Consensus 383 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 462 (675)
++.+.-+++...-- |..-...|-..+......|+.+-|..++....+-..+..+.+--.-....-..|+.+.|..+++.
T Consensus 313 ~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~ 391 (577)
T KOG1258|consen 313 FSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQR 391 (577)
T ss_pred HHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999888876532 22234455556666666689888888887766554333333332223334456799999999998
Q ss_pred HHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhHHHHHHHHHH-----HcCCHHHHHHHHHHH
Q 044815 463 MVKAGLNPDIH-AYTTLIAAFCRQKKMKESE---KFFQEAITAGLFPTKETYTSMICGYL-----RDGNISSAVKYFQRM 533 (675)
Q Consensus 463 m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m 533 (675)
+.+.- |+.. .-..-+....+.|+.+.+. .++....... -+......+.--+. -.++.+.|..++.++
T Consensus 392 i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~ 467 (577)
T KOG1258|consen 392 IESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEA 467 (577)
T ss_pred HHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 88763 4432 2233345556778887777 3333333221 22223333332222 357888899999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC
Q 044815 534 NQIGCAPDNITYGALISGLCKQS 556 (675)
Q Consensus 534 ~~~~~~p~~~~~~~l~~~~~~~g 556 (675)
.+. .+++...|..+++.+...+
T Consensus 468 ~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 468 NDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhc-CCccHHHHHHHHHHHHhCC
Confidence 875 4556677777777665544
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.34 E-value=12 Score=31.58 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=24.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 519 RDGNISSAVKYFQRMNQIGCAPDNI---TYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
..++.+++..++..|.- +.|+.. ++...+ +...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 35555666666655554 334322 222222 34556666666666665553
No 314
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.33 E-value=17 Score=33.26 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 044815 553 CKQSKLDEACQFYESMIGKGI 573 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~ 573 (675)
...+++.+|+.+|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777766433
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.29 E-value=38 Score=37.20 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=33.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCC---CCHHHHH-----HHHHHHHhcCchhHHHHHHHHHH
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQN---VDRVSLA-----ALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+.+...+. .|+.++.......+.....+ -....|. .+...+-..|+.++|.....++-
T Consensus 539 ~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 44444444 77777766655554433222 1344553 34445777899999888877653
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.69 E-value=1.2 Score=42.72 Aligned_cols=96 Identities=20% Similarity=0.098 Sum_probs=74.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--ChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKKL--WIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 624 (675)
-.+-|.++|.+++|+..|...+. ..| +.+++..-+.+|.+..++..|..-......-+ -...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999888 566 77888888899999999988877666654422 23455555566666889
Q ss_pred HHHHHHHHHHHhcCCCCCCHHH
Q 044815 625 VGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
..||.+-++.+++..|+ +...
T Consensus 181 ~~EAKkD~E~vL~LEP~-~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK-NIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcc-cHHH
Confidence 99999999999999887 4443
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.57 E-value=1 Score=26.85 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+|..++.+|...|++++|.+.++++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777776654
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.39 E-value=0.81 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.+..++.++.+.|++++|.+.++++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556777888888888888888887763
No 319
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.32 E-value=44 Score=36.66 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=21.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhc
Q 044815 229 MVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDK 271 (675)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 271 (675)
+|-.+.|.|++++|.++..+.... .......+...+..+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 444566667777666666443332 233344555555555543
No 320
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=6.7 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=15.5
Q ss_pred HHHHHHHhcCchhHHHHHHHHHH
Q 044815 649 ALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 649 ~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.++.++++.|+|.+|..+....+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 35666777777777777665544
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.30 E-value=5.4 Score=35.65 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHcCCHHHHHHHHHHHhhCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCch
Q 044815 587 YCKQGDSATAMIILESLDKKL---WIRTVNTLIRKLCSEKRVGMAALFFHKLLGK---DQNVDRVSLAALKNACYESNKY 660 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 660 (675)
+.+.|+ ++|.+.|-.+...+ ++.....|+..|. ..+.++|+.++.++++. +.++|+..+.+|+.++.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 56777777776654 3444455555444 66888999999888765 3367899999999999999999
Q ss_pred hHHH
Q 044815 661 ALFS 664 (675)
Q Consensus 661 ~~A~ 664 (675)
++|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9875
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.14 E-value=0.66 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=21.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+|..++..|.+.|++++|...|+++++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777778888888888877776554
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.51 E-value=5.1 Score=38.12 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCC---CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC
Q 044815 217 RGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRG---AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWK 293 (675)
Q Consensus 217 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 293 (675)
.|.+....+...++..--...+++.+..++-++.... ..| ..+-...++.+.+. +.++++.++..=+..|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~-~~~~~~~irlllky----~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLR-NWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhc-cccHHHHHHHHHcc----ChHHHHHHHhCcchhccc
Confidence 3444555556666665555667777777777765431 111 12233344444443 567777777777777888
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 294 PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
||..+.+.+|+.+.+.+++.+|..+...++..
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888887777666553
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.32 E-value=37 Score=34.64 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCC
Q 044815 196 GIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRG 275 (675)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 275 (675)
..+...|.++.+.+.+...... +.....+..++++...+.|++++|..+-+-|....++ +...........-.. |
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l---~ 405 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADAL---Q 405 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHH---h
Confidence 3455667777777666555432 2234455666677777777777777777777665554 222222221111111 4
Q ss_pred CHHHHHHHHHHHHHc
Q 044815 276 SIKQAFELLEEMVRK 290 (675)
Q Consensus 276 ~~~~a~~~~~~~~~~ 290 (675)
-++++...++++...
T Consensus 406 ~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 406 LFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHHhcc
Confidence 566666666666544
No 325
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.06 E-value=0.77 Score=27.65 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 044815 222 DASSYKLMVVAYCRMGRVTEA 242 (675)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A 242 (675)
|+.+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 445555555555555555544
No 326
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.05 E-value=19 Score=31.04 Aligned_cols=54 Identities=9% Similarity=-0.118 Sum_probs=30.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 044815 162 SFAEIGRLKEGFSMVIEMTNNGLPLIT-STLNRVVGIACELGLVEYAEEVFDEMCAR 217 (675)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 217 (675)
.-.+.++.+++..++..+.-.. |.. ..-..-...+...|++++|+.+|+++.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3345556666666666665532 332 22222233455677777777777776654
No 327
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.62 E-value=33 Score=33.43 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=86.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR---- 484 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 484 (675)
...+++..+...+......+. ......+...|.. ..+..+|...+..+.+.| .......|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCc
Confidence 356778889988888776432 2344444444443 456888999999887766 33344456666655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDG-------NISSAVKYFQRMNQIGCAPDNITYGALISGLCK--- 554 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 554 (675)
..+..+|..+|+++.+.|..+.......+...|..-. +...|...+.++-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 4488999999999999875433222333444433321 1225666666655544 22233333333322
Q ss_pred -cCCHHHHHHHHHHHHhCCC
Q 044815 555 -QSKLDEACQFYESMIGKGI 573 (675)
Q Consensus 555 -~g~~~~A~~~~~~~~~~g~ 573 (675)
..++++|...|+...+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 2255566666666665543
No 328
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=4.7 Score=38.39 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=63.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044815 291 GWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDN--YKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTN 368 (675)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 368 (675)
|......+...++..-....+++++...+-++..... ..|+...+ +++ -++-.-+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~i-rlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWI-RLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHH-HHHHccChHHHHHHHhCcchhccccchh
Confidence 3344445555555555556677777777666532211 11221111 112 2233456677887777777788888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 369 TYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888887776666543
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.11 E-value=31 Score=38.78 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=10.5
Q ss_pred HHhcCChhHHHHHHHHHh
Q 044815 198 ACELGLVEYAEEVFDEMC 215 (675)
Q Consensus 198 ~~~~g~~~~A~~~~~~~~ 215 (675)
+..+|++++|.+.|+++.
T Consensus 356 lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHhhhHHHHHHHHHhhc
Confidence 344566666666666654
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.93 E-value=1.5 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
.+++.++..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777777654
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.87 E-value=33 Score=32.66 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 338 MISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDL 392 (675)
Q Consensus 338 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (675)
....|..+|.+.+|..+.++.+... +.+...+-.++..+...|+--.|.+-++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3344445555555555555544431 12344444555555555554444444433
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.82 E-value=12 Score=33.47 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=40.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHH
Q 044815 518 LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK---GISPCEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~ 594 (675)
.+.|+ ++|.+.|-++...+.--++.....++.-|. ..+.+++..++.++++. +-.+|+..+..|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 456666655555443334444444443333 45566666666666542 22445555666666666666665
Q ss_pred HH
Q 044815 595 TA 596 (675)
Q Consensus 595 ~A 596 (675)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 54
No 333
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.71 E-value=2.7 Score=43.41 Aligned_cols=102 Identities=16% Similarity=-0.056 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
...|+...|...+..+......-..+....|+....+.|...+|-.++.+... ...+.++..+++++....+++.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 45788899999888887632222335566788888888888888888877544 2345567788888889999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 631 FFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
.|++++++.++ +.++-+.|..+-+
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 99999999998 7777777665544
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.52 E-value=61 Score=35.44 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=62.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 044815 160 VSSFAEIGRLKEGFSMVIEMTNNGLPL---ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRM 236 (675)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 236 (675)
|+-+.+.+.+++|+++.+..... .+ -......++..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34456677788887776664432 23 2356677777888888888888887777643 566676666666666
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHh
Q 044815 237 GRVTEADRWLSAMLDRGAILDNATLTLLITAFCD 270 (675)
Q Consensus 237 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 270 (675)
++...... -+.......+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 65443322 22222223455666666666654
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.25 E-value=12 Score=34.24 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=77.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDS 593 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~ 593 (675)
.|....+++.|+..|.+.+. +.|+.. -|+.-+.++.+..+++.+..-..+.++ +.|+.+ ..+.++........+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 35556678888888877776 567764 456667777888889888888888887 667654 345677778888888
Q ss_pred HHHHHHHHHHhh-------CCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 594 ATAMIILESLDK-------KLWIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 594 ~~A~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
++|+..+++... .+....+..|..+=-+.=...++.++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888888887632 12334556555543333344555555544
No 336
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=13 Score=34.28 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGK------GISPCEVTR-----------VTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
+...-.+-+.+.|++.+|..-|.+++-. .-+|-..-| .+...++...|++-++++--.++.+.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444455677888888888888776521 122322222 12233444456666666666665542
Q ss_pred --CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 607 --LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 607 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+..+|..-+.+.+..=+.++|..-|.++++.+|.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 34555555555555555677777777777776664
No 337
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.76 E-value=52 Score=33.98 Aligned_cols=238 Identities=11% Similarity=0.109 Sum_probs=125.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHH-HH
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHLKQA------ETKQALGLFCRMVKAG-LNP-DIHAYTTLIAAFCRQKKMKES-EK 493 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~------~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A-~~ 493 (675)
.+|++..+ ..+....|+..|..|...- ....-..+++...+.+ ..+ ....|..+.-.++......++ ..
T Consensus 303 ~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 45555443 2344555555555554432 2333344444444332 222 345566666666655543332 22
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHH-H-HHHHHH
Q 044815 494 FFQEAITAGLFPTKETYTSMICGYLRDG-NISSA-VKYFQRMNQIGCAPDNITYGALISGLCKQSK-LDEA-C-QFYESM 568 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A-~-~~~~~~ 568 (675)
+..+. +..+...|-.-+....+.. +++-- ..++......-+.+-...|+... .|+ .+.. . .++..+
T Consensus 381 l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 22232 3346666655555554321 22111 11222232221223333444333 222 2211 1 122222
Q ss_pred HhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHH--ccCCHHHHHHHHHHHhcCCCCCC
Q 044815 569 IGKGISPCEVTR-VTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLC--SEKRVGMAALFFHKLLGKDQNVD 643 (675)
Q Consensus 569 ~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~ 643 (675)
.. -..|+..++ ..+..-+.+.|-.++|.+.+..+..- +....+..+|..-. ..-+...+.++|+.|...--. |
T Consensus 452 ~s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~-d 529 (568)
T KOG2396|consen 452 LS-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA-D 529 (568)
T ss_pred HH-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC-C
Confidence 22 234566666 45777788889999999999988763 35556666665432 223478888999988765334 7
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 644 RVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 644 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+..|.....--...|.-+-+-.++.++++-
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 888887777777888888888888877763
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.18 E-value=5.1 Score=35.01 Aligned_cols=45 Identities=20% Similarity=0.076 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc----hhHHHHHHHHH
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK----YALFSDLSQRI 670 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~ 670 (675)
+++|+.-|++++..+|+ ...++..++.+|...+. ..+|.++|+++
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 34555555666666666 55666666666655443 23444444444
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.02 E-value=1.2 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.++.++.+.|++++|.+.|+++++.-|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 345555566666666666666665544
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.83 E-value=29 Score=36.56 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
..+.+++-+.+.|-.++|++ +.+|...- .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~---------~s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE---------LSTDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhh---------cCCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45566666666676666544 23333322 223457788888888766542 4567888999988
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 044815 554 KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
..|++..|.+.|.+..+ +..|+..+...|+-+-...+-....+.. ..|.-.-+|...|++++..+++.
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g---~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG---KNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc---ccchHHHHHHHcCCHHHHHHHHH
Confidence 99999999888887755 2245556666777654444444333321 12333345677899998888776
Q ss_pred HH
Q 044815 634 KL 635 (675)
Q Consensus 634 ~~ 635 (675)
.-
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 53
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.63 E-value=27 Score=36.74 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=51.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 307 CKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERA 386 (675)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 386 (675)
.+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 4556666666554332 3445566666666666666666666655443 33444455555555544
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 387 YDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 387 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
..+-....+.| ..|.. ..+|...|+++++.+++.+
T Consensus 712 ~~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHh
Confidence 44444555444 22221 1234445666666666544
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.71 E-value=9.6 Score=31.49 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhh--CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 574 SPCEVTRVTLAYEYCKQGDSA---TAMIILESLDK--KL--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 574 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++..+...+++++.+..+.+ +.+.+++.+.+ .| .......|.-++.+.|+++.++++.+.+++..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 566777888999999887654 46668888765 22 2233455677889999999999999999998887
No 343
>PRK10941 hypothetical protein; Provisional
Probab=82.64 E-value=6.7 Score=37.43 Aligned_cols=61 Identities=10% Similarity=-0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
..+-.+|.+.++++.|++..+.+.. +.++.-+.--+-.|.+.|.+..|..-++..++..|+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 3455566677777777777777544 345555666666677777777777777776666654
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.56 E-value=4.9 Score=32.49 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
|..+-+..+...+.-|++......+.+|.+.+|+.-|.++++.+..|||
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 3445566677778888888888888888888888888888888888876
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.49 E-value=17 Score=28.39 Aligned_cols=46 Identities=7% Similarity=-0.025 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 044815 171 EGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA 216 (675)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 216 (675)
+..+-++.+....+.|.+.+..+.+++|.+.+++..|.++|+.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555566677777777777777777777777777777765
No 346
>PRK09687 putative lyase; Provisional
Probab=82.49 E-value=49 Score=32.01 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 540 PDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
+|...-...+.++.+.|+ ..|...+-+.++.+. .....+.++...|.. +|...+.++.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 344444444445555544 234444333333221 122344444444443 3444444443
No 347
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.30 E-value=85 Score=34.62 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=113.2
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 044815 449 KQAETKQALGLFCRMVKAG-LNPD--IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 525 (675)
...+.+.|..++....... ..+. ......+.......+...+|...+....... .+......-+..-.+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3556788888888775443 2222 1233444433334333566777766654332 345555555666668899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-----HHHHH
Q 044815 526 AVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSAT-----AMIIL 600 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-----A~~~~ 600 (675)
+...+..|.... .-...-.--+.+++...|+.++|..+|+.+... . +|+.++. -.+.|..-. .-..-
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LA-a~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVA-AQRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHH-HHHcCCCCCCCCCCCCchh
Confidence 888888886532 223333344667777789999999999998541 1 2333221 112222100 00000
Q ss_pred HHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 601 ESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 601 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
..+... .--.-+..+.+.|+..+|...+..+... . +......++....+.|.++.+.....
T Consensus 403 ~~~~~~----~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 403 SALTQG----PEMARVRELMYWNMDNTARSEWANLVAS-R--SKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred hhhccC----hHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 000000 1122344566778888888888777664 2 44556666777777777777766554
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.45 E-value=2.6 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=17.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
.|..++..+...|++++|...+++.++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555566666666666666666655443
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.26 E-value=4.5 Score=29.75 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=31.1
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVD--RVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
...++.++|+..|+++++.-+++. ..++..++.+|+..|++.++.++.-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777766533 1244555666777777777666543
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.18 E-value=2.1 Score=23.78 Aligned_cols=22 Identities=18% Similarity=-0.002 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHH
Q 044815 647 LAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 647 ~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
...++.++...|+.++|.+.++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666666666666666554
No 351
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.11 E-value=25 Score=27.16 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044815 171 EGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVV 231 (675)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 231 (675)
++.+-++.+......|++.+..+-+++|.+.+++..|.++|+.+..+ +..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44455555556667777777777788888888888888887776633 1123344554443
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.70 E-value=28 Score=35.38 Aligned_cols=131 Identities=12% Similarity=0.023 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044815 511 TSMICGYLRDGNISSAVKYFQ-RMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK 589 (675)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 589 (675)
..-|.--...|+.-.|-+-+. -+....-.|+.+...+. .+...|+++.+.+.+...... +.....+...++....+
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 333444456788777655444 44443334555544443 467889999998887766442 23345677888888999
Q ss_pred cCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 590 QGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
.|++++|...-+.|... .++.....-...--..|-+|++...|++.....+..+.
T Consensus 370 l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred hhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 99999999988887653 23333333333345678899999999999988886443
No 353
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.61 E-value=28 Score=33.77 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISGLC------KQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 596 (675)
++++..++++....+ .|........|.++- ..-+|.....+|+.+.. +.|++++-.+-.-+..+....+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Confidence 467777888777765 477777777766653 22467778888888887 445544333334455555667777
Q ss_pred HHHHHHHhhCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH
Q 044815 597 MIILESLDKKLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR 644 (675)
Q Consensus 597 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 644 (675)
+.+.+.+...+. ...+..-...+.+.|+.++|...|++++..-.++-.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 777777766532 222355667788999999999999999888766433
No 354
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.53 E-value=1.2e+02 Score=34.47 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH----------------HH---HHHHhcCChHHHHHHHHHHHh
Q 044815 136 YIVCATSLISNGNFERAHEVMQC----------------MV---SSFAEIGRLKEGFSMVIEMTN 181 (675)
Q Consensus 136 y~~~~~~l~~~~~~~~a~~~~~~----------------li---~~~~~~g~~~~A~~~~~~~~~ 181 (675)
+..-+..+....+|++|..+-+. +. --+..+|++++|...|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 44455666777778887755441 11 136688999999999999754
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.47 E-value=59 Score=31.04 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=46.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++-..+.|.+.|++.+|.++-++++..+|- +...+..|...+...|+-=.|...+++..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345566777888888888888888888887 778888888888888887777777776654
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.42 E-value=3 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=13.3
Q ss_pred HHHHHHHhcCchhHHHHHHHHHH
Q 044815 649 ALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 649 ~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.|+.+|...|+.+.|+++++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 35555666666666666665554
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.77 E-value=19 Score=31.56 Aligned_cols=22 Identities=9% Similarity=0.299 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 044815 559 DEACQFYESMIGKGISPCEVTRVT 582 (675)
Q Consensus 559 ~~A~~~~~~~~~~g~~p~~~~~~~ 582 (675)
++|...|+++.+ ..|+...|+.
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~k 118 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRK 118 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHH
Confidence 344444444444 4455555543
No 358
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.27 E-value=38 Score=36.84 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=7.9
Q ss_pred hHHHHHHHHhh
Q 044815 114 MVALSFFYWAI 124 (675)
Q Consensus 114 ~~al~~f~~~~ 124 (675)
...-.+++|+-
T Consensus 114 ~v~~~Ll~WvN 124 (566)
T PF07575_consen 114 PVPEQLLDWVN 124 (566)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 35677889983
No 359
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.19 E-value=45 Score=28.36 Aligned_cols=53 Identities=8% Similarity=-0.115 Sum_probs=31.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 044815 164 AEIGRLKEGFSMVIEMTNNGLPLIT-STLNRVVGIACELGLVEYAEEVFDEMCARG 218 (675)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 218 (675)
...++.+++..++..|.-.- |+. ..-..-...+...|++++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34677777777777766542 322 222222234567788888888888877653
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.97 E-value=8.9 Score=34.60 Aligned_cols=74 Identities=12% Similarity=-0.030 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC--CCHHHHHHHHHH
Q 044815 580 RVTLAYEYCKQGDSATAMIILESL-DKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN--VDRVSLAALKNA 653 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~ 653 (675)
....+..+.+.+.+++|+...+.- ..+| +...-..++..||-.|++++|..-++-+-...++ +-..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566788889999999987764 4445 4455567888899999999999988887777664 234567777665
No 361
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.46 E-value=1.1 Score=38.22 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGD 592 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 592 (675)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++... ++.+ ..++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd~-----~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYDL-----DKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS-C-----THHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccCH-----HHHHHHHHhcch
Confidence 456666677777777777777765545556777778888888777677666666211 1222 234455556666
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCch
Q 044815 593 SATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKY 660 (675)
Q Consensus 593 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 660 (675)
+++|.-++.++...... +..+.+.++++.|.+++.+. ++...|..++..|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~~a------l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA------LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTTC------SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHHH------HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence 66665555544332111 11122334444444333221 2567888888887776653
No 362
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.46 E-value=48 Score=30.63 Aligned_cols=86 Identities=19% Similarity=0.129 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCH
Q 044815 481 AFCRQKKMKESEKFFQEAITAGLFPTK-ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNIT-YGALISGLCKQSKL 558 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~ 558 (675)
.|....++..|...|.+.+.. .|+. .-|+.-+.++.+..+++.+..--.+.++ +.||.+- --.+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 455667889999988888875 4666 4566777888899999998887777776 5677653 33455566778889
Q ss_pred HHHHHHHHHHHh
Q 044815 559 DEACQFYESMIG 570 (675)
Q Consensus 559 ~~A~~~~~~~~~ 570 (675)
++|+..+.+...
T Consensus 95 ~eaI~~Lqra~s 106 (284)
T KOG4642|consen 95 DEAIKVLQRAYS 106 (284)
T ss_pred cHHHHHHHHHHH
Confidence 999999998854
No 363
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.33 E-value=4.2 Score=22.56 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=7.9
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 044815 583 LAYEYCKQGDSATAMIIL 600 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~ 600 (675)
++..+...|+.++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444443
No 364
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.18 E-value=1e+02 Score=31.89 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=64.5
Q ss_pred HHHHcCCHHHHHHHHHHHH---HCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH---
Q 044815 516 GYLRDGNISSAVKYFQRMN---QIGC--APDN---ITYGALISGLCKQSKLDEACQFYESMIG-------KGISPCE--- 577 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~---~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~--- 577 (675)
.+.-.|++.+|.+++...- +.|. .|.- ..||.+.-...+.|.+.-+..+|.++++ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456788888888876532 1121 2211 1235555555666777766666666653 4655522
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHH
Q 044815 578 -------VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLC 620 (675)
Q Consensus 578 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 620 (675)
...+..+-.|...|+.-.|.+.|.+..+ ..++..|-.|..+|.
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345566677788888888887777655 456777877777765
No 365
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.18 E-value=0.7 Score=39.48 Aligned_cols=128 Identities=14% Similarity=0.112 Sum_probs=75.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK 557 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 557 (675)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 455666677777888888888876655667778888888888877777777766211 1223445666777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCC
Q 044815 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 624 (675)
+++|.-++.++-...-..+ .+...++++.|.+++ .+.++...|..++..+...++
T Consensus 86 ~~~a~~Ly~~~~~~~~al~---------i~~~~~~~~~a~e~~---~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEALE---------ILHKLKDYEEAIEYA---KKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTCSS---------TSSSTHCSCCCTTTG---GGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHHHH---------HHHHHccHHHHHHHH---HhcCcHHHHHHHHHHHHhcCc
Confidence 7777777666432110000 122334445554222 233456677777777766554
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.89 E-value=1.4e+02 Score=33.45 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=118.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhHCCCCCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc----CCCCChhhH
Q 044815 231 VAYCRMGRVTEADRWLSAMLDRGAILDN-------ATLTLLITAFCDKGFRGSIKQAFELLEEMVRK----GWKPNVYTH 299 (675)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 299 (675)
.......++++|..+..++...-..|+. ..++.+-...... .|+++.|.++-+..... -..+....+
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~--~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN--RGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 4556678899999888887654222222 1333333322222 37889988888776553 233456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH---HH--HHHHHhcCC--hHHHHHHHHHHHHc--CCC----CC
Q 044815 300 TVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYT---AM--ISGYCKEEK--MNRAEMLLERMKEQ--GLL----PN 366 (675)
Q Consensus 300 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~~~--~~~A~~~~~~m~~~--g~~----p~ 366 (675)
..+..+..-.|++++|..+..+..+.. -.-++..+. .+ ...+...|. +.+....|...... +-. +-
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a-~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMA-RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 788888888999999988876654321 112322222 22 122334552 23333333333221 011 12
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 044815 367 TNTYTSLIYGHCKV-GNFERAYDLMDLMGKEGCTPNIYAY--NAIIDGLCKKGRVQEAYELLKKAFQRELQ----ADKIT 439 (675)
Q Consensus 367 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 439 (675)
..++..+..++.+. +...++..-+..-......|-...+ ..|+..+...|+.++|...+.++...... ++..+
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 23444455555441 1122222222222222212222222 26777888899999999998887754322 22222
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHH
Q 044815 440 YTILLS--EHLKQAETKQALGLFCR 462 (675)
Q Consensus 440 ~~~li~--~~~~~~~~~~A~~~~~~ 462 (675)
-...++ .....|+.+++.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222 34457777777766554
No 367
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.90 E-value=70 Score=29.52 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=82.6
Q ss_pred HhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 044815 144 ISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTN----NGLPLITS-TLNRVVGIACELGLVEYAEEVFDEMCARG 218 (675)
Q Consensus 144 ~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 218 (675)
...+.+++|.++|......|--..++..|-..|.+.-+ .|-+.|.. +|.-..+ |.+.+++++|.+.++..
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~eAv~cL~~a---- 99 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEEAVNCLEKA---- 99 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHHHHHHHHHH----
Confidence 34568899999999988888888888888887776533 33333333 3333333 33555777777766554
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--CCCCCh
Q 044815 219 VCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK--GWKPNV 296 (675)
Q Consensus 219 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 296 (675)
|..|...|++..|-....++-+. .+.+. .++++|+..|+..-+- |-+.+.
T Consensus 100 -----------ieIyt~~Grf~~aAk~~~~iaEi-yEsdl----------------~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 100 -----------IEIYTDMGRFTMAAKHHIEIAEI-YESDL----------------QDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred -----------HHHHHhhhHHHHHHhhhhhHHHH-HhhhH----------------HHHHHHHHHHHHHHHHHcchhhhh
Confidence 34566777776655443333221 00011 3455555555554331 111111
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 297 ---YTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 297 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
..+.-+...-...+++.+|+++|+++.+
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223333456778888888877754
No 368
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.82 E-value=6.5 Score=26.60 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+..++.++++.|++++|++..+.+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345566777888888888888777765
No 369
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.78 E-value=1.4e+02 Score=32.77 Aligned_cols=21 Identities=5% Similarity=-0.151 Sum_probs=14.4
Q ss_pred ccCCHHHHHHHHHHHhcCCCC
Q 044815 621 SEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~ 641 (675)
-.+++.+|++..+.|.+..+.
T Consensus 378 LAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 378 LANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hccCHHHHHHHHHHHhccCCc
Confidence 356777777777777776653
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.71 E-value=86 Score=29.96 Aligned_cols=103 Identities=13% Similarity=0.201 Sum_probs=56.4
Q ss_pred hCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHhh---
Q 044815 145 SNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMT----NNGLPLITSTLNRVVGIACELGLVE-YAEEVFDEMCA--- 216 (675)
Q Consensus 145 ~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~--- 216 (675)
+++++++|.+++..-...+.+.|+...|.++...+. +.+.+.+......++..+...+.-+ +-.++.+.+.+
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~ 81 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSK 81 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHc
Confidence 456777777777777777777777776666554433 3466667666666666666554322 12222222221
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 217 RGV--CADASSYKLMVVAYCRMGRVTEADRWLS 247 (675)
Q Consensus 217 ~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 247 (675)
.|- .-|+.....+...|.+.|++.+|..-|-
T Consensus 82 ~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 82 FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 111 2366777777888888888888876553
No 371
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.66 E-value=1.4e+02 Score=32.46 Aligned_cols=30 Identities=3% Similarity=-0.119 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
+...-..++..|.+.|-.+.|.++.+.+-.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445556666666666666666554443
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.62 E-value=70 Score=32.95 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=17.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYL 518 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 518 (675)
|...|++-.|.+.|.+.+.. +..++..|-.|..+|.
T Consensus 345 ~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 34445555555555555443 2344555555555544
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.86 E-value=85 Score=29.53 Aligned_cols=248 Identities=13% Similarity=0.141 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCC
Q 044815 310 GWTEKAFRLFLKLVRSDNYKPN--VHTYTAMISGYCKEEKMNRAEMLLERMKEQ---GL--LPNTNTYTSLIYGHCKVGN 382 (675)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~g~ 382 (675)
..+++|+.-|++.++-.|-+.+ -...-.++....+.+++++....+.+|+.. .+ .-+..+.|++++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3556666666665554332222 123344556666666666666666665421 11 1123445556555554444
Q ss_pred HHHHHHHHH-------HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHH
Q 044815 383 FERAYDLMD-------LMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ-----------ADKITYTILL 444 (675)
Q Consensus 383 ~~~A~~~~~-------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li 444 (675)
.+-..++|+ ......+ --.|-..|...|...+.+.+..++++++...-.. .-...|..=|
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRL--WFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERL--WFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhccee--eeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 443333332 2221111 0112234666666677777777777666542110 1124577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH----CCCCCCHh---HHH
Q 044815 445 SEHLKQAETKQALGLFCRMVKA-GLNPDIHAYTTLIAA-----FCRQKKMKESEKFFQEAIT----AGLFPTKE---TYT 511 (675)
Q Consensus 445 ~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~----~~~~~~~~---~~~ 511 (675)
..|..+.+-..-..++++...- ..-|.+.... +|.- ..+.|++++|..-|-++.+ .|. |... -|-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHH
Confidence 8888888877777777766542 2234443332 3332 3467888888765555543 232 2222 234
Q ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 512 SMICGYLRDGN--ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 512 ~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
.|.+.+.+.|- ++. ++.....-.|.....+.++.+|.. ++..+-.+++..
T Consensus 277 VLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 277 VLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 44445554431 110 011111123445567788888754 455555555443
No 374
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=72.33 E-value=55 Score=32.97 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=10.2
Q ss_pred hcCchhHHHHHHHHHHh
Q 044815 656 ESNKYALFSDLSQRIAE 672 (675)
Q Consensus 656 ~~g~~~~A~~~~~~~~~ 672 (675)
..|++++|...+-+++|
T Consensus 258 ~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 258 TQGRYDDAAARLYRALE 274 (380)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 56666666665555554
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.24 E-value=6.4 Score=22.14 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 645 VSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 645 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.++..++..+...|++++|...++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778899999999999999999988753
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.98 E-value=61 Score=27.51 Aligned_cols=91 Identities=9% Similarity=0.063 Sum_probs=43.7
Q ss_pred HhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhH
Q 044815 180 TNNGLPLIT--STLNRVVGIACELGLVEYAEEVFDEMCARGV-----CADASSYKLMVVAYCRMGR-VTEADRWLSAMLD 251 (675)
Q Consensus 180 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 251 (675)
.+.+..++. ...+.++......+++.-.+.+++.+..... ..+..+|++++.+..+..- --.+..+|.-|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 3356666666666666666666666532100 1233345555555433333 2234444455544
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 044815 252 RGAILDNATLTLLITAFCD 270 (675)
Q Consensus 252 ~g~~~~~~~~~~ll~~~~~ 270 (675)
.+..+...-|..+|.++.+
T Consensus 109 ~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cCCCCCHHHHHHHHHHHHc
Confidence 4445555555555554443
No 377
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.86 E-value=1.3e+02 Score=31.31 Aligned_cols=167 Identities=13% Similarity=0.024 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHH
Q 044815 185 PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLL 264 (675)
Q Consensus 185 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 264 (675)
+.|....-.++..+.......-++.+..+|...| -+-..+-.++.+|..+ .-++-..+++++.+..+. |.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3455566666666666666666777777776654 3556666666666666 445566666666665432 23322333
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCCC--Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 265 ITAFCDKGFRGSIKQAFELLEEMVRKGWKP--NV---YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMI 339 (675)
Q Consensus 265 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 339 (675)
..-|-+ ++...+...|.++...-++. +. ..|..|... -..+.+..+.+..++....|...-.+.+..+-
T Consensus 139 a~~yEk----ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 139 ADKYEK----IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHH----hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 333333 34555555565555432211 10 122222211 12344445555444444444444444555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQ 361 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~ 361 (675)
.-|....++++|++++..+.+.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhh
Confidence 5555566666666666655554
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.74 E-value=22 Score=36.03 Aligned_cols=91 Identities=21% Similarity=0.174 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-----
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIG-------KGISPCE-----VTRVTLAYEYCKQGDSATAMIILESLDKKL----- 607 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 607 (675)
...++.++....++.+.++..+...+ .|-.|-. .+...|+...+-.|++..|++.++.+.-..
T Consensus 78 VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~ 157 (404)
T PF10255_consen 78 VLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYT 157 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhc
Confidence 33455556666666665554444211 1111100 122334555666677777777776653210
Q ss_pred -----ChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 608 -----WIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 608 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
.+.++..++-+|.-.+++.+|++.|..+
T Consensus 158 ~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 158 KVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred cCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455566666666666666666554
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.54 E-value=9.9 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQ 430 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~ 430 (675)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.32 E-value=39 Score=34.42 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=29.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNI--TYGALISGLC--KQSKLDEACQFYESMIG 570 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 570 (675)
+...+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566677777777766654 334333 3333444432 34556666666666654
No 381
>PRK12798 chemotaxis protein; Reviewed
Probab=71.10 E-value=1.2e+02 Score=30.71 Aligned_cols=218 Identities=12% Similarity=0.080 Sum_probs=130.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-HcCCH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHA-YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYL-RDGNI 523 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 523 (675)
....-|+++-. +.+...+..++... ...-+.+| -.|+.+++.+.+..+......+....|-.|+.+-. ...+.
T Consensus 90 y~lSGGnP~vl----r~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 90 YLLSGGNPATL----RKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred hHhcCCCHHHH----HHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 33445665544 44445544443321 12222233 35999999999999887777777888888887654 45689
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHcC---CHH
Q 044815 524 SSAVKYFQRMNQIGCAPDNI----TYGALISGLCKQSKLDEACQFYESMIGK-GISPCEVTRV-TLAYEYCKQG---DSA 594 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~-~l~~~~~~~g---~~~ 594 (675)
.+|+++|+...- .-|... ....-+-.....|+.+++..+-.+..+. .-.|=..-+. .+...+.+.+ ..+
T Consensus 165 ~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~ 242 (421)
T PRK12798 165 ATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDA 242 (421)
T ss_pred HHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHH
Confidence 999999998875 346533 3444455667899999988776666543 2223222222 2333444433 233
Q ss_pred HHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH-HHHHHHHH--HHHhcCchhHHHHHHHHH
Q 044815 595 TAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR-VSLAALKN--ACYESNKYALFSDLSQRI 670 (675)
Q Consensus 595 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~--~~~~~g~~~~A~~~~~~~ 670 (675)
.-..++..|....-...|..+.+.-.-.|+.+-|...-++++......+. .....|.. +-.-..+.++|.+.+..+
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 34444444444444668888999999999999999999988876532121 11112222 223455677777766544
No 382
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.96 E-value=60 Score=27.04 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044815 256 LDNATLTLLITAFCDKGFRGSIKQAFELLEEMVR-KGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD 326 (675)
Q Consensus 256 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 326 (675)
+...+--.+..++.+..+..++.+.+.+++++.+ ..........--|.-++.+.+++++++++.+.+++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 4444555555666666555678888899999886 2222233334456677889999999999988887643
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.69 E-value=59 Score=30.90 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=51.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGL----- 552 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----- 552 (675)
=|.+++..+++.++....-+--+.--+-...+...-|-.|.+.|....+.++-..-...--.-+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 367778888888777665444433222234455555666778888777777666655421111223465555443
Q ss_pred HhcCCHHHHHHHH
Q 044815 553 CKQSKLDEACQFY 565 (675)
Q Consensus 553 ~~~g~~~~A~~~~ 565 (675)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4568888887766
No 384
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.58 E-value=2.1e+02 Score=33.09 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHC
Q 044815 203 LVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDR 252 (675)
Q Consensus 203 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 252 (675)
.+++|+.-|+.+... +--+--|---.-+|-+.|++++-.+.+....++
T Consensus 534 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 534 DFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 467788888887542 222333433344677788888777766665544
No 385
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=70.07 E-value=57 Score=26.43 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh---------C----CChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK---------K----LWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
-.|..++...|++++++.--+.... . .|+...-.-..++-..|+.++|+..|+.+
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3455556666666554433332211 1 12333334445566677777777777653
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.23 E-value=31 Score=25.59 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCCHHHHHH
Q 044815 226 YKLMVVAYCRMGRVTEADR 244 (675)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~ 244 (675)
+..++.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444443
No 387
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=69.06 E-value=1.1e+02 Score=29.35 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhH-CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCHHHH
Q 044815 238 RVTEADRWLSAMLD-RGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVR-KGWKPNVYTHTVLIDGLCKKGWTEKA 315 (675)
Q Consensus 238 ~~~~A~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 315 (675)
-+.+|+.+|+.... ..+--|..+...+++....... .....-.++.+-+.. .|-.++..+...++..+++.+++.+-
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~-~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN-TKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc-cchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34566666663221 1233466666666666655211 122222233333332 23345666667777778888888887
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044815 316 FRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLER 357 (675)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 357 (675)
.++++......+...|...|...|+.....|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777777655545556777777777777777776655555443
No 388
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.94 E-value=42 Score=30.87 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=48.0
Q ss_pred HHhcCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHHcCCHHH-------HHHHHHHHhhCC-------C-hh
Q 044815 552 LCKQSKLDEACQFYESMIG----KGISPCE--VTRVTLAYEYCKQGDSAT-------AMIILESLDKKL-------W-IR 610 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~----~g~~p~~--~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~-------~-~~ 610 (675)
+.....+++|.+.|.-++- .+-.|.. ..+..+++.|...|+.+. |.+.|++..... + ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 4455667777777766552 1333332 334456777777777444 333333332211 1 11
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
....++....+.|+.++|.+.|.+++..+-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 2233444455677777777777777666555
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.81 E-value=1.1e+02 Score=31.70 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=35.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC
Q 044815 307 CKKGWTEKAFRLFLKLVRSDNYKPNVHT--YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTN--TYTSLIYGHCKVGN 382 (675)
Q Consensus 307 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~ 382 (675)
++.|+.+-+..++ + .|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+
T Consensus 10 ~~~g~~~iv~~Ll----~-~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 10 ILFGELDIARRLL----D-IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHhCCHHHHHHHH----H-CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 4456665544333 2 244444322 233445555666654 334444555555432 11223334456666
Q ss_pred HHHHHHHHH
Q 044815 383 FERAYDLMD 391 (675)
Q Consensus 383 ~~~A~~~~~ 391 (675)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 665544443
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.60 E-value=7.9 Score=35.20 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=45.2
Q ss_pred HHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 586 EYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+..+.|+.+.|.+++.++.. +.|...|-.++..--+.|+++.|.+.|++.++.+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 45567888888888888765 457778888888888888999988888888888886
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.66 E-value=15 Score=28.27 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=44.7
Q ss_pred HHHHHhhC-CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCchh
Q 044815 599 ILESLDKK-LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-DRVSLAALKNACYESNKYA 661 (675)
Q Consensus 599 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 661 (675)
+-..+... .+...-..+...+...|++++|++.+-.+++.++.. +...-..++.++...|.-+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 33344444 466777889999999999999999999999987654 5667777888887777754
No 392
>PRK10941 hypothetical protein; Provisional
Probab=67.00 E-value=58 Score=31.18 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
..+.+-.+|.+.++++.|+++.+.++. +.|+. .-+..-+..|.+.|.+..|..-++...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 455666677888888888888888888 55654 445667777888888888887666643
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.90 E-value=97 Score=31.59 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAGLFPTKE--TYTSMICGYL--RDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 536 (675)
+..+.+.+++..|.++|+++.+. +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999987 544444 4555666664 467889999999987763
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.25 E-value=17 Score=28.23 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 647 LAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 647 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...++......|++++|.+.++++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33455555566666666666665543
No 395
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.11 E-value=81 Score=29.04 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=51.6
Q ss_pred HHHHcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------C---CCC-C-H
Q 044815 516 GYLRDGNISSAVKYFQRMNQ----IGCAPD--NITYGALISGLCKQSKLDEACQFYESMIGK-------G---ISP-C-E 577 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g---~~p-~-~ 577 (675)
-|.....+++|++.+.-+.- .+.+|. ...+..+...|...|+-+.-..+++.+.+. . ..+ + .
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 34455567777776664432 122333 224444555566677766666666665521 1 111 1 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDKKLW 608 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 608 (675)
...+.++....+.|+.++|.+.|.++...+.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3345566667777777777777777766443
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.19 E-value=1e+02 Score=29.43 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=8.1
Q ss_pred HHHHHhcCChhHHHHHH
Q 044815 195 VGIACELGLVEYAEEVF 211 (675)
Q Consensus 195 ~~~~~~~g~~~~A~~~~ 211 (675)
|.+++..+++.++....
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 34455555555544443
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.26 E-value=54 Score=27.16 Aligned_cols=44 Identities=9% Similarity=-0.030 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 627 MAALFFHKLLGKDQNV-DRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
++.++|+.|...++.- -+.-|...+..+...|++++|.+++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7788888877765531 4667788888888888888888888764
No 398
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.51 E-value=1.2e+02 Score=28.33 Aligned_cols=97 Identities=11% Similarity=0.014 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHH------CCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQ------IGCAPDNI-----------TYGALISGLCKQSKLDEACQFYESMI 569 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (675)
+.+...-.+-+.+.|++.+|..-|++.+. ..-+|... .+.....++...|++-++++-..+.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555556667788888888888876541 11133322 22334445566788888888888887
Q ss_pred hCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 570 GKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 570 ~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.. .|+ ...|..-+.+....=+.++|..-|..+..
T Consensus 258 ~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 258 RH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 73 343 34555455555555566777776666554
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.03 E-value=19 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=8.7
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 044815 615 LIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~ 634 (675)
++.+|.+.|++++|.++.++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444443
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.91 E-value=16 Score=20.97 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 623 KRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
|+.+.|..+|++++...|. +...|..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHHH
Confidence 4677888888888887775 6777766554
No 401
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.39 E-value=1.5e+02 Score=28.50 Aligned_cols=115 Identities=7% Similarity=0.131 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 347 KMNRAEMLLERMKE-QGLLPNTNTYTSLIYGHCK-VG-NFERAYDLMDLMGKE-GCTPNIYAYNAIIDGLCKKGRVQEAY 422 (675)
Q Consensus 347 ~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 422 (675)
.+.+|+++|+.... ..+--|..+...++..... .+ ....-.++.+-+... |-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555666552211 2244456665555555544 11 222223333333322 23556666667777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 423 ELLKKAFQR-ELQADKITYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 423 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
++++..... ++..|...|..+|+...+.|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777666544 455666777777777777777665554443
No 402
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.14 E-value=75 Score=24.88 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
...++|..+-+-+...+-. ...+--.-+..+...|++++|..+.+.. +.||...|-.|-.. +.|..+++..-
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce~--rlGl~s~l~~r 90 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCEW--RLGLGSALESR 90 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHHH--hhccHHHHHHH
Confidence 3455555555555443211 1111112233455566666666554332 34666666555433 44555555555
Q ss_pred HHHHHHcC
Q 044815 355 LERMKEQG 362 (675)
Q Consensus 355 ~~~m~~~g 362 (675)
+.+|..+|
T Consensus 91 l~rla~sg 98 (115)
T TIGR02508 91 LNRLAASG 98 (115)
T ss_pred HHHHHhCC
Confidence 55555443
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.08 E-value=32 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
-++.+.|++++|.+..+.+++ +.|+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 345566666666666666665 45544
No 404
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.66 E-value=1.5e+02 Score=28.27 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHH
Q 044815 338 MISGYCKEEKMNRAEMLLERMKEQGLLPNTNTY-------TSLIYGHCKVGNFERAYDLM 390 (675)
Q Consensus 338 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~A~~~~ 390 (675)
+.+...+.+++++|+..+.++...|+..|..+. ..+...|...|++..--+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 455566778888888888888888887776543 34555666666655444433
No 405
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.23 E-value=58 Score=31.76 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-ChhhHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKG-ISPC--EVTRVTLAYEYCKQGDSATAMIILESLDKK-L-WIRTVNTLIRK 618 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~ 618 (675)
.|.-=.+-|.+..++..|...|.+-+... -.|| .+.|..-+.+-...|++..|+.-..+..+. | ....|.-=..+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444444555566666666666555421 1122 233333333333445555555444443331 1 22222222333
Q ss_pred HHccCCHHHHHHHHHHH
Q 044815 619 LCSEKRVGMAALFFHKL 635 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~ 635 (675)
+.+..++++|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44455555555554443
No 406
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.48 E-value=2.3e+02 Score=29.27 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=85.5
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhH
Q 044815 176 VIEMTNNGLPLITST--LNRVVGIACELGLVEYAEEVFDEMCARGVCADAS--SYKLMVVAYCRMGRVTEADRWLSAMLD 251 (675)
Q Consensus 176 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 251 (675)
++.+.+.|..++... ....+...+..|+.+-+. .+.+.|..|+.. .....+...++.|+.+.+..+++.
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--- 90 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL--- 90 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc---
Confidence 334444565544321 223344455667765433 334444444322 112334556677887766555543
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 252 RGAILD----NATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYT--HTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 252 ~g~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
|...+ ....+.+ ...+.. |+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.-+++.
T Consensus 91 -~~~~~~~~~~~g~tpL-~~A~~~---~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~---- 157 (413)
T PHA02875 91 -GKFADDVFYKDGMTPL-HLATIL---KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH---- 157 (413)
T ss_pred -CCcccccccCCCCCHH-HHHHHh---CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc----
Confidence 22111 1112222 223333 4443 4445555665554322 12334445566776554433321
Q ss_pred CCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 044815 326 DNYKPN---VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNT---YTSLIYGHCKVGNFERAYDLMDLMGKEGCT 399 (675)
Q Consensus 326 ~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (675)
|..++ ..-+ +.+...+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..
T Consensus 158 -g~~~~~~d~~g~-TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad 227 (413)
T PHA02875 158 -KACLDIEDCCGC-TPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGAD 227 (413)
T ss_pred -CCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcC
Confidence 22221 1112 2233344456544 3444555666555322 123343344555543 33444555655
Q ss_pred CCH
Q 044815 400 PNI 402 (675)
Q Consensus 400 ~~~ 402 (675)
++.
T Consensus 228 ~n~ 230 (413)
T PHA02875 228 CNI 230 (413)
T ss_pred cch
Confidence 553
No 407
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.16 E-value=1.6e+02 Score=27.35 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044815 152 AHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVV 231 (675)
Q Consensus 152 a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 231 (675)
|...++..+..|...-+|.-|....++..+ |-.+-+. +-.|.+..+..--.++.+-....++.-+......++
T Consensus 129 AQQAlRRtMEiyS~ttRFalaCN~s~KIiE----PIQSRCA--iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii- 201 (333)
T KOG0991|consen 129 AQQALRRTMEIYSNTTRFALACNQSEKIIE----PIQSRCA--ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII- 201 (333)
T ss_pred HHHHHHHHHHHHcccchhhhhhcchhhhhh----hHHhhhH--hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh-
Confidence 445556666777777777766666665533 2111111 112334433333333444333344443433333333
Q ss_pred HHHHcCCHHHHHHHHHHHhHC-C-----------CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCh
Q 044815 232 AYCRMGRVTEADRWLSAMLDR-G-----------AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNV 296 (675)
Q Consensus 232 ~~~~~g~~~~A~~~~~~m~~~-g-----------~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (675)
+...|+..+|+.-++.-... | -.|.+.....++..|.+ +++++|.+++.++-+.|+.|..
T Consensus 202 -fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~----~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 202 -FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK----RNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred -hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCHHH
Confidence 34567777776666554321 1 24666677777777766 4788888888888888777643
No 408
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.14 E-value=3e+02 Score=30.30 Aligned_cols=27 Identities=19% Similarity=0.024 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 299 HTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 299 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
|..+..+|.-..+.+.+.++++++.++
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 345667777788888888888888763
No 409
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.57 E-value=3.2e+02 Score=30.34 Aligned_cols=102 Identities=12% Similarity=0.037 Sum_probs=59.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhc
Q 044815 195 VGIACELGLVEYAEEVFDEMCARGVCA---DASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDK 271 (675)
Q Consensus 195 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 271 (675)
++.+.+.+.+++|+.+.+..... .| -...+...|..+.-.|++++|-...-+|... +..-|.-.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44566778888888887766543 33 3445777788888888888888888887764 444444444444433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 044815 272 GFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCK 308 (675)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (675)
+ ... .+..-+.......+...|..++..+..
T Consensus 437 ~---~l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 D---QLT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred c---ccc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 1 111 122222222122345567777766665
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.85 E-value=5.8 Score=38.38 Aligned_cols=116 Identities=15% Similarity=-0.007 Sum_probs=81.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-ChhhHHHHHHHHHccCCHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDKK-L-WIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
...|.+++|++.|...++ +.|.. ..|..-...+.+.++...|++-+.....- + ....|-.-..+-.-.|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 357889999999999988 44544 34445677788889999998888776552 2 3344555555666789999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..+..+.+.+..+... ..+-...-..+..++-...+++..+
T Consensus 203 ~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHH
Confidence 9999999998864433 3344455556666666666665554
No 411
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.58 E-value=15 Score=37.38 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=69.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhh-CC-ChhhHHHHHHHHHccCCH
Q 044815 549 ISGLCKQSKLDEACQFYESMIGKGISPCEVTRVT-LAYEYCKQGDSATAMIILESLDK-KL-WIRTVNTLIRKLCSEKRV 625 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~ 625 (675)
+..+.+.+.++.|..++.++++ +.|+...|.. -..++.+.+++..|+.=+.++.+ .| ....|---+.++.+.+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 4456678899999999999999 7787766644 34788899999988886666554 22 233444455666777888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHH
Q 044815 626 GMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 626 ~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
.+|...|+......|+ +...-
T Consensus 89 ~~A~~~l~~~~~l~Pn-d~~~~ 109 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPN-DPDAT 109 (476)
T ss_pred HHHHHHHHHhhhcCcC-cHHHH
Confidence 9999999888777776 44433
No 412
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.52 E-value=25 Score=35.94 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=71.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNIT-YGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQ 590 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 590 (675)
-...+.+.++++.|..++.+.++ +.||-.. |..-..++.+.+++..|+.=+.++++ ..|+. ..|..-+.++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhH
Confidence 35566778899999999999998 4686544 44444788899999999999999988 44543 2333345566677
Q ss_pred CCHHHHHHHHHHHhh-CCChhhHHHHHHHH
Q 044815 591 GDSATAMIILESLDK-KLWIRTVNTLIRKL 619 (675)
Q Consensus 591 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~ 619 (675)
+.+.+|...|+.... .|+..-..-++.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 788888888887655 34443344444433
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.18 E-value=31 Score=24.24 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..++.+|...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666666666666666665543
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.94 E-value=2.2e+02 Score=28.04 Aligned_cols=83 Identities=19% Similarity=0.108 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHhhC--------CC-hhh
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGK---GISPCEVTRV--TLAYEYCKQGDSATAMIILESLDKK--------LW-IRT 611 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~ 611 (675)
..++....+.++.++|+++++++.++ .-.|+.+.+. ..+..+...|+..++.+.++..... ++ ...
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445556677899999999998864 3446666653 3566777889999998888877651 11 123
Q ss_pred HHHHHHHHHc-cCCHHHH
Q 044815 612 VNTLIRKLCS-EKRVGMA 628 (675)
Q Consensus 612 ~~~l~~~~~~-~g~~~~A 628 (675)
|+.+..-|.+ .|++..+
T Consensus 159 fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 5555555443 5555543
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.57 E-value=94 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
+.......|+.++|.+.+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444556667777777777666543
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.55 E-value=1.8e+02 Score=26.78 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=53.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 044815 159 MVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARG--VCADASSYKLMVVA 232 (675)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~ 232 (675)
.++.+.+.++.++|+...++-.+.. |.+..+-..++..+|-.|++++|..-++-..+.. ..+....|..+|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4556677788888888888777664 6677778888999999999999988887766542 22345566666654
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.37 E-value=1.9e+02 Score=27.18 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=19.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
++..+-+.|+++++.+.++++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4445555566666666666665555444444444444333
No 418
>PRK12798 chemotaxis protein; Reviewed
Probab=54.31 E-value=2.6e+02 Score=28.59 Aligned_cols=224 Identities=12% Similarity=0.034 Sum_probs=129.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-Hh
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHL--KQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF-CR 484 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~ 484 (675)
.+-....-|+.+-...++ ..+..++.. ..++.+.. -.|+.+++.+.+..+.....++....|-.|+.+- ..
T Consensus 87 a~iy~lSGGnP~vlr~L~----~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~ 160 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLL----ARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMV 160 (421)
T ss_pred HHhhHhcCCCHHHHHHHH----HcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhc
Confidence 333445567766555444 333333222 23333332 3799999999999988877788888888887765 45
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhH----HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHhcCCH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKET----YTSMICGYLRDGNISSAVKYFQRMNQI-GCAPDNIT-YGALISGLCKQSKL 558 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~-~~~l~~~~~~~g~~ 558 (675)
..+...|.++|+...=. .|..-. ...-+-.....|+.+++..+-.+.... ...|-..- +..+..++.+.++-
T Consensus 161 ~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 161 ATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred ccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc
Confidence 67899999999987753 244332 333344567889998877665554432 12232222 23334444444432
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCh-----hhHHHHHHHHHccCCHHHH
Q 044815 559 DEACQFYESMIGKGISPC--EVTRVTLAYEYCKQGDSATAMIILESLDKK---LWI-----RTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 559 ~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~l~~~~~~~g~~~~A 628 (675)
..-.. +..++.. +.|+ ...|..+...-.-.|+.+-|.-.-++...- ++. ..|.... -.-..++++|
T Consensus 239 ~~~~~-l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~a 314 (421)
T PRK12798 239 IRDAR-LVEILSF-MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAA--LVASDDAESA 314 (421)
T ss_pred ccHHH-HHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHH--ccCcccHHHH
Confidence 22222 3333332 2232 357777888888899999888877776541 111 1122211 1235568888
Q ss_pred HHHHHHHhcCCCCCC
Q 044815 629 ALFFHKLLGKDQNVD 643 (675)
Q Consensus 629 ~~~~~~~~~~~~~p~ 643 (675)
.+.+..+-.....+.
T Consensus 315 l~~L~~I~~~~L~~~ 329 (421)
T PRK12798 315 LEELSQIDRDKLSER 329 (421)
T ss_pred HHHHhcCChhhCChh
Confidence 888877755554433
No 419
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.97 E-value=3.5e+02 Score=30.01 Aligned_cols=266 Identities=12% Similarity=0.069 Sum_probs=130.4
Q ss_pred hCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 044815 145 SNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADAS 224 (675)
Q Consensus 145 ~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 224 (675)
+..+...+..+-...+..+.+.++++..+. |. .. .+.+...-.....+....|+.++|......+=..| ...+.
T Consensus 91 ~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~---~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~ 164 (644)
T PRK11619 91 ANPTLPPARSLQSRFVNELARREDWRGLLA-FS---PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPN 164 (644)
T ss_pred HCCCCchHHHHHHHHHHHHHHccCHHHHHH-hc---CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCCh
Confidence 334444444444445555666666655444 21 11 24455555666667777777766665555553333 23455
Q ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHhHCCCCCCHHHHHHHHHHH-----------HhcCCCCCHHHHHHHHHHHHHcC
Q 044815 225 SYKLMVVAYCRMGRVTE--ADRWLSAMLDRGAILDNATLTLLITAF-----------CDKGFRGSIKQAFELLEEMVRKG 291 (675)
Q Consensus 225 ~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~~~~~~~~~ll~~~-----------~~~~~~~~~~~a~~~~~~~~~~~ 291 (675)
.++.++..+.+.|.... .++=++.+...| +...-..+...+ ... ..+...+...+..
T Consensus 165 ~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al--~~~p~~~~~~~~~----- 234 (644)
T PRK11619 165 ACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKL--QNDPNTVETFART----- 234 (644)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHH--HHCHHHHHHHhhc-----
Confidence 66666666665554332 222222222222 111111111111 000 0111111111111
Q ss_pred CCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 044815 292 WKPNVYTHTVLIDGL--CKKGWTEKAFRLFLKLVRSDNYKPNV--HTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNT 367 (675)
Q Consensus 292 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 367 (675)
..++...-..++.++ ....+.+.|...+.+........+.. ..+..+.......+..++|...++...... .|.
T Consensus 235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~ 312 (644)
T PRK11619 235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QST 312 (644)
T ss_pred cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCc
Confidence 112221111122222 13445688888888765544433332 233344433333333566666666544322 233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
....--+..-.+.++++.+...+..|.... .-......-+.+++...|+.++|...|+.+.
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334444445557888888888888876532 2344555667888778899999999988864
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.52 E-value=1.8e+02 Score=31.88 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=11.9
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 044815 413 CKKGRVQEAYELLKKAFQR 431 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~ 431 (675)
.-.+++.+|.+.-+.|.+.
T Consensus 377 VLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhccCHHHHHHHHHHHhcc
Confidence 3456666777666666654
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.31 E-value=2.1e+02 Score=27.33 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=45.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044815 294 PNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSL 373 (675)
Q Consensus 294 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 373 (675)
-+...+..+...|.+.|++.+|...|-.- -.++...+..++......|...++ |...-..+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaV 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAV 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHH
Confidence 36778888999999999999998776321 123333332333333333333332 12222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc
Q 044815 374 IYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
-.|.-.++...|...++...+.
T Consensus 149 -L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 -LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -HHHHHTTBHHHHHHHHHHHHHH
T ss_pred -HHHHHhcCHHHHHHHHHHHHHH
Confidence 3456678888888877766544
No 422
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.91 E-value=27 Score=31.92 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
...+.++.+.|.+++.+.++ +.|. ...+..++..-.+.|+++.|.+.+++..+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34577899999999999988 5553 35667788888899999999999998765
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.34 E-value=1.8e+02 Score=26.87 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP---CEVTR--VTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~ 601 (675)
.+..+++.. ..++..-++.|+--|.-...+.+|...|..- .|+.| |..++ +.-+....+.|++++|+..+.
T Consensus 13 ~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 13 EEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 344445444 4566666777776666655566666655443 34554 33333 445677789999999999888
Q ss_pred HHhhC---CChhhHHHH----HHHHHccCCHHHHHHHHHHHhc
Q 044815 602 SLDKK---LWIRTVNTL----IRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 602 ~~~~~---~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
.+... .+...+-.| .--+.+.|+.++|+++.+.-+.
T Consensus 89 ~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 89 QLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 86431 222222211 2225678889999998876443
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.93 E-value=2.1e+02 Score=26.87 Aligned_cols=39 Identities=5% Similarity=0.022 Sum_probs=16.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 444 LSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF 482 (675)
Q Consensus 444 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 482 (675)
+....+.|+++++...++++...+...+..-.+.|..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 334444455555555555554444344444444444443
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.76 E-value=2.4e+02 Score=27.60 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=71.7
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH
Q 044815 503 LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI-GCAPDNITYGALISGLCKQSKLDEACQFYESMIGK----GISPCE 577 (675)
Q Consensus 503 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~ 577 (675)
+..|...++.|... ...+.++--+..+...+. |-.--...+.....-||+-|+.+.|.+.+.+..++ |.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44555555555442 222333434444444432 21112335566677788888888888887776553 666655
Q ss_pred HHH-HHHHHHHHHcC----CHHHHHHHHHHH---hhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 044815 578 VTR-VTLAYEYCKQG----DSATAMIILESL---DKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAA 649 (675)
Q Consensus 578 ~~~-~~l~~~~~~~g----~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 649 (675)
+-+ ..++..|.... .++.|..++++= ..+.-..+|..+ .+..-.++.+|-.+|-..+..-......+|.+
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~ 221 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVSTFTSYELMSYET 221 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcccccceecccHHH
Confidence 433 22444443322 333444444331 111122333333 12345577888777766655443333444554
Q ss_pred HHH
Q 044815 650 LKN 652 (675)
Q Consensus 650 l~~ 652 (675)
++.
T Consensus 222 ~v~ 224 (393)
T KOG0687|consen 222 FVR 224 (393)
T ss_pred HHH
Confidence 443
No 426
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.26 E-value=1.1e+02 Score=23.49 Aligned_cols=50 Identities=18% Similarity=-0.045 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC----ChhhHHHHHHHHHccCCH
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDKKL----WIRTVNTLIRKLCSEKRV 625 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 625 (675)
|......++..+...|++++|++.+-.+.+.. +-..-..|+..+.-.|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 44677889999999999999999888776642 223335555555544443
No 427
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.91 E-value=1.3e+02 Score=32.00 Aligned_cols=151 Identities=16% Similarity=0.081 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 044815 330 PNVHTYTAMISGYCKE--EKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNA 407 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 407 (675)
|+..+..+++.-.... ..-+-+-.++..|.. .+.|-..+.|...-.+.-.|+...|...+.........-..+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 5555544444333221 112333444444433 2333333333222233345777777776665543321112233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFC 483 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 483 (675)
|.+.+.+.|...+|-.++.+.+... ...+-++..+.+++....+++.|++.|++..+.. +-+...-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6666667777777777777766554 3445566677777777788888888887777654 334455555544444
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.84 E-value=96 Score=27.47 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=9.9
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 044815 586 EYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~ 605 (675)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555444
No 429
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.46 E-value=2.8e+02 Score=28.00 Aligned_cols=156 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------
Q 044815 441 TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA---------------------- 498 (675)
Q Consensus 441 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---------------------- 498 (675)
......+...++++.-..++.+- +-.+.++..+...+...|+.+.|.++++++
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~~-----PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQKN-----PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q ss_pred ---HHCCCCCCHhHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh-
Q 044815 499 ---ITAGLFPTKETYTSM---ICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC-KQSKLDEACQFYESMIG- 570 (675)
Q Consensus 499 ---~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~- 570 (675)
......-|...|.++ |..+.+.|-+..|+++-+-+...+..-|+.....+|+.|+ +.++++--+++++....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Q ss_pred -----CCCCCCHHHHHHHHHHHHHcCCH---------------HHHHHHHHHH
Q 044815 571 -----KGISPCEVTRVTLAYEYCKQGDS---------------ATAMIILESL 603 (675)
Q Consensus 571 -----~g~~p~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~ 603 (675)
...-|+ ...+.+.++...++. ++|...+.+.
T Consensus 169 ~~~~~~~~lPn--~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 169 CYRNWLSLLPN--FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred hhhhhhhhCcc--HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHH
No 430
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.84 E-value=92 Score=26.57 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=40.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044815 529 YFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGD 592 (675)
Q Consensus 529 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 592 (675)
+.+.+.+.|++++.. -..++..+...++.-.|.++|+++.+.+...+..|.+.-+..+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344455566665543 234566666676667888888888887666666676666666666663
No 431
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.74 E-value=37 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHH
Q 044815 646 SLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
.+..++-.+...|++++|+++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888889999999999854
No 432
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.37 E-value=4.4e+02 Score=29.82 Aligned_cols=73 Identities=11% Similarity=0.223 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 044815 150 ERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLIT--STLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK 227 (675)
Q Consensus 150 ~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 227 (675)
++++.+|. .|...|+++.|.+.-+. +|+. .++..-...|.+.+++..|.+++-++.+ .|.
T Consensus 359 dE~R~vWk----~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FE 420 (911)
T KOG2034|consen 359 DEARDVWK----TYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFE 420 (911)
T ss_pred cchHHHHH----HHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHH
Confidence 44444443 57778888888775433 2232 2333444556677788888888777632 344
Q ss_pred HHHHHHHHcCCHH
Q 044815 228 LMVVAYCRMGRVT 240 (675)
Q Consensus 228 ~li~~~~~~g~~~ 240 (675)
.+.--+....+.+
T Consensus 421 EVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 421 EVALKFLEINQER 433 (911)
T ss_pred HHHHHHHhcCCHH
Confidence 4444455555554
No 433
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.30 E-value=1.3e+02 Score=23.67 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
+.+.|++++|..+.+.+ ..||...|.+|-. .+.|-.+++..-+.+|...
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34455555555544433 2345544444322 2444444444444444443
No 434
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.16 E-value=2e+02 Score=25.79 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGC--------------TPNIYAYNAIIDGLCKKGRVQEAYELLK 426 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 426 (675)
+++..|.+.-++.+..++++.|.+..+ .+--...|.-...+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 456677788888888888888765421 1222334555566666666666666665
No 435
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.79 E-value=2.5e+02 Score=26.93 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 044815 331 NVHTYTAMISGYCKEEKMNRAEMLLERMKE----QGLLPNTNTYTS-LIYGHCKVGNFERAYDLMDLMGKEGCTP 400 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~ 400 (675)
....+..+...||+.++.+.+.+.+++..+ .|.+.|+..... |.-.|....-+++-++..+.|.+.|...
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 345566666667776666666665555433 344444432211 2222223333555666666666666543
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.95 E-value=80 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 360 (675)
|+..+|..++..+...|+.++|.+..+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 437
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=47.91 E-value=3.9e+02 Score=28.79 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=33.7
Q ss_pred CcchhhhHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHH
Q 044815 129 FRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMV 176 (675)
Q Consensus 129 ~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~ 176 (675)
|.........+++-+...-++.+|.+++...++++.+-.-++.+...|
T Consensus 43 ~~~~~~r~l~ll~e~l~~h~W~~Aa~~~s~ylq~~~~~~s~~~~~~~~ 90 (547)
T PF14929_consen 43 FHENRRRCLRLLREALLQHQWQEAAGVMSSYLQGLEDDDSPQRAREIF 90 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhhhHHH
Confidence 333333444555666677788888899988888888888777776555
No 438
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.09 E-value=1.5e+02 Score=24.45 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=13.7
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 500 TAGLFPTKETYTSMICGYLRDGNISSAVKYFQRM 533 (675)
Q Consensus 500 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (675)
..++.|++.+...-+.++-+.+++..|.++|+-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.92 E-value=1e+02 Score=29.17 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 581 VTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
..++..|.+.|++++|.++|+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666777777777777777653
No 440
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.78 E-value=1.2e+02 Score=24.38 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAFQ 430 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~~ 430 (675)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56667777777777777777776655
No 441
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=46.68 E-value=1.4e+02 Score=24.29 Aligned_cols=63 Identities=11% Similarity=-0.137 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHh-------cCCCCCCHHHHH----HHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLL-------GKDQNVDRVSLA----ALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..+..|..++...|++++++.-.++++ +.... .-..|. +-+.++-..|+.++|...++++.+-
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345678888999999988776555544 33333 333343 3456788999999999999987664
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.39 E-value=84 Score=20.69 Aligned_cols=31 Identities=13% Similarity=0.360 Sum_probs=15.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+.|-..++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444455555555555555554544444433
No 443
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.32 E-value=1.3e+02 Score=22.90 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHH
Q 044815 590 QGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVG 626 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (675)
.|+.+.|.+++..+.. .+..+..++.++.+.|.-+
T Consensus 49 ~g~~~~ar~LL~~L~r--g~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIVQ--KEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhcc--CCcHHHHHHHHHHHcCchh
Confidence 3555555555555552 2223444555555444433
No 444
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.29 E-value=29 Score=33.84 Aligned_cols=118 Identities=19% Similarity=0.105 Sum_probs=79.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 595 (675)
....|.+++|++.+...++.. .+....|..-..++.+.+++..|++=+...++ +.||.. -|-.-..+-...|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 346788999999999988853 44566777788889999999999999999988 666642 23333445556799999
Q ss_pred HHHHHHHHhhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 596 AMIILESLDKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 596 A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
|.+.+....+.+ +..+-..+=...-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 999999887753 222222222233344455554555554443
No 445
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.55 E-value=5.7e+02 Score=30.07 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 044815 152 AHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLI----TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYK 227 (675)
Q Consensus 152 a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 227 (675)
+...|..+++.+-+.+-.+.+.++-...++.- +++ ..+++.+.+.....|.+.+|.+.+-..... ..-..+..
T Consensus 982 ~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLR 1058 (1480)
T KOG4521|consen 982 ALHYYLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHH
Confidence 46778888888888888888888887776642 222 245677777777788877777665443221 11233455
Q ss_pred HHHHHHHHcCCHH
Q 044815 228 LMVVAYCRMGRVT 240 (675)
Q Consensus 228 ~li~~~~~~g~~~ 240 (675)
-++..++.+|+++
T Consensus 1059 qlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1059 QLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHhccchH
Confidence 6667777777654
No 446
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.28 E-value=1.6e+02 Score=31.67 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--ChhhHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCE------VTRVTLAYEYCKQGDSATAMIILESLDKKL--WIRTVNTL 615 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l 615 (675)
.|+.... ..+..++..+.+.|+.-+.. +..|. ...+.+..+|.+..++|.|.++++++++.+ .+.+-..+
T Consensus 357 LWn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 357 LWNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3444333 34667788888888876652 11111 234567778888889999999999988743 33344455
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCC
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
..+....|+-++|+.........-
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 566777888899988887776543
No 447
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.26 E-value=2.3e+02 Score=25.46 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHhh
Q 044815 379 KVGNFERAYDLMDLMGK 395 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~ 395 (675)
+.|+++.|.+.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44666666666666654
No 448
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.12 E-value=88 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=10.3
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHH
Q 044815 201 LGLVEYAEEVFDEMCARGVCADASSY 226 (675)
Q Consensus 201 ~g~~~~A~~~~~~~~~~~~~~~~~~~ 226 (675)
.|-.+++..++++|.+.|+.-+...+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHH
Confidence 33333444444444444433333333
No 449
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.60 E-value=1.8e+02 Score=24.04 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 593 SATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ-NVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 593 ~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
++.+.+.|..... +.|+.-....+.---..++ +.++|..|...++ .--+..|...+..+-..|++.+|.++++.
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
No 450
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.40 E-value=1.1e+02 Score=27.60 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 538 CAPDNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 538 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
..|+..+|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356666666666666666666666666666655
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.29 E-value=1.2e+02 Score=30.95 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=93.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQ-------IGCAPDN-----ITYGALISGLCKQSKLDEACQFYESMIG-- 570 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 570 (675)
.+...-..++..+....++.+.++..+.... .|..|-. .+...|++..+-.|++..|+++++.+.=
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 4555555666777777777776666655321 1211111 1334567778889999999999987631
Q ss_pred C----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHH-H-HHccCCHHHHHHHHHHH-------h
Q 044815 571 K----GISPCE-VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIR-K-LCSEKRVGMAALFFHKL-------L 636 (675)
Q Consensus 571 ~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~-~-~~~~g~~~~A~~~~~~~-------~ 636 (675)
. .+.+.. .+++.++.+|...+++.+|.+.|..+.. |-.-.+ . ..+..++|...+..++| .
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~------yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~ 226 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL------YIQRTKNQYHQRSYQYDQINKKNEQMYALLAICL 226 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhccccchhhHHHhHHHHHHHHHHHHH
Confidence 1 223332 4678899999999999999999998764 211111 1 22333455545555544 3
Q ss_pred cCCC-CCCHHHHHHHHHHH------HhcCchhHHHHHHHHH
Q 044815 637 GKDQ-NVDRVSLAALKNAC------YESNKYALFSDLSQRI 670 (675)
Q Consensus 637 ~~~~-~p~~~~~~~l~~~~------~~~g~~~~A~~~~~~~ 670 (675)
...| ..|..+...+-+-| .+.|+.+...++|..+
T Consensus 227 ~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 227 SLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 3344 23444444444333 3455655566665543
No 452
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.88 E-value=1.4e+02 Score=22.69 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 352 EMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEA 421 (675)
Q Consensus 352 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 421 (675)
.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. .| ...|..++.++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3445555555543 22222222222223455666666666655 32 22445555555555544433
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.23 E-value=1.7e+02 Score=26.00 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=11.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 044815 445 SEHLKQAETKQALGLFCRMVK 465 (675)
Q Consensus 445 ~~~~~~~~~~~A~~~~~~m~~ 465 (675)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555554
No 454
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.21 E-value=4.1e+02 Score=27.75 Aligned_cols=150 Identities=13% Similarity=0.060 Sum_probs=86.7
Q ss_pred HHcCCHHHHHHHHHHHHHC-CCCCCHHH-------HHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 044815 518 LRDGNISSAVKYFQRMNQI-GCAPDNIT-------YGALISG-LCKQSKLDEACQFYESMIGKGISPCEVT--RVTLAYE 586 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~-~~~p~~~~-------~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~ 586 (675)
.-.|++.+|++-+..|.+- .-.|.... ...++.. ++..|.++.|..-|....+.--..|... -..++-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 4568888888888888752 11344211 1122322 3456788888888888776422223322 2346777
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCh---------hhHHHHHHHHHccCCHHHHHHHHHHHhcCCC-C----CCHHHHHHHHH
Q 044815 587 YCKQGDSATAMIILESLDKKLWI---------RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ-N----VDRVSLAALKN 652 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~----p~~~~~~~l~~ 652 (675)
|.+.|+.+.-.++++.+...... ..+..-+-...+.|++.||..++.+-++..- + ...-.+..|+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 88888888877777776543111 1111122223468889999888887766531 1 11223445566
Q ss_pred HHHhcCchhHHHHHH
Q 044815 653 ACYESNKYALFSDLS 667 (675)
Q Consensus 653 ~~~~~g~~~~A~~~~ 667 (675)
.....|+..++..+.
T Consensus 494 v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHhcchHHHHhcc
Confidence 667777777766544
No 455
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.14 E-value=3.2e+02 Score=26.52 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADK----ITYTILLSEHLKQAETKQ-ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 487 (675)
.+...+++.....++-.++.--|+. ..|..++++-.-+.+-+. |.+.+++ ..+|.-|+.++|..|+
T Consensus 266 s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQ 336 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCCh
Confidence 3344556655555443333333443 357777766544422211 2222222 3357778888888888
Q ss_pred HHHHH
Q 044815 488 MKESE 492 (675)
Q Consensus 488 ~~~A~ 492 (675)
.+...
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 76543
No 456
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.83 E-value=29 Score=28.73 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=16.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVG 196 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 196 (675)
.|.-.+|..+|.+|++.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34455566666666666655553 444443
No 457
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.48 E-value=3.5e+02 Score=26.80 Aligned_cols=81 Identities=4% Similarity=-0.105 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044815 205 EYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELL 284 (675)
Q Consensus 205 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 284 (675)
+.-+.++++..+.+ +.+...+-.++..+.+..+.++..+.++++...... +...|...|.........-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556666666653 345666666777777777777777777777765322 4555655555544421112455555555
Q ss_pred HHH
Q 044815 285 EEM 287 (675)
Q Consensus 285 ~~~ 287 (675)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 543
No 458
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.04 E-value=59 Score=31.16 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=40.6
Q ss_pred HHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 586 EYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
-..+.|+.++|.++|+...+ +.++....-++...-..++.-+|-++|-+++...|. +...+
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~-nseAL 187 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG-NSEAL 187 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC-chHHH
Confidence 34567888888888877654 335555556665555667777788888777777776 55443
No 459
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.82 E-value=57 Score=20.27 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+|..|+.+-...++++.|.+=++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666666666666666666554
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.69 E-value=3.1e+02 Score=25.91 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 044815 147 GNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTN----NG-LPLITSTLNRVVGIACELGLVEYAEEVFDE 213 (675)
Q Consensus 147 ~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 213 (675)
+...-+..+.-.|...|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-+
T Consensus 172 ~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 172 GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33333334444566667777777777777766521 11 112334444555555666666655554433
No 461
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.63 E-value=6.3e+02 Score=29.48 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=61.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISS-AVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTL 583 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 583 (675)
++..+-...+.++...+..+. +...+..+.+ .+|...-...+.++...|..+.+...+..+++. ++...-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHH
Confidence 455555555555555554322 2334444433 345556666666666666654443344444432 233344445
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 584 AYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
+.++.+.+. +++...+..+.+.++...-...+.++.+.+....+...+.++++
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555555554 34555555555555544444455555553223345555555544
No 462
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.47 E-value=30 Score=28.67 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=18.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 345 EEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 345 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
.|.-..|..+|++|++.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 35556677777777777777765 555554
No 463
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.30 E-value=68 Score=30.92 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044815 329 KPNVHT-YTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTY 370 (675)
Q Consensus 329 ~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 370 (675)
.||..+ |+..|....+.|++++|+.++++.++.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344444 446677777777777777777777777665444444
No 464
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.85 E-value=3.6e+02 Score=26.48 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMG----KEGCTPNIYAYNAIID-GLCKKGRVQEAYELLKKAFQRELQADKI---- 438 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 438 (675)
..+......||+.|+.+.|.+.+++-. ..|.+.|+..+..-+. .|....-+.+-++..+.+.+.|..-+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 445566677788888887777766543 3466666655543332 2333333445555555555555433322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 439 TYTILLSEHLKQAETKQALGLFCRMVK 465 (675)
Q Consensus 439 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 465 (675)
+|..+ .+....++.+|-.+|-+...
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 22222 12334567777777655543
No 465
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=40.51 E-value=2.3e+02 Score=24.12 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRE-----LQADKITYTILLSEHLKQAE-TKQALGLFCRMVKAGLNPDIHAYTTLI 479 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li 479 (675)
|.++.-....+.+.....+++.+..-. -..+...|.+++.+.....- ---+..+|+-|.+.+.+.+..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444455555555544442110 01234456666666644444 334455666666666666666666666
Q ss_pred HHHHh
Q 044815 480 AAFCR 484 (675)
Q Consensus 480 ~~~~~ 484 (675)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 66554
No 466
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.49 E-value=81 Score=29.94 Aligned_cols=59 Identities=8% Similarity=-0.145 Sum_probs=36.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+-..|.++++++.|....++... +.++..+.--+-+|.+.|...-|++-+....+.-|+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 33456666777777776666544 334445555666667777777777666665555554
No 467
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.85 E-value=3.9e+02 Score=26.27 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 044815 558 LDEACQFYESMIGKGI----SPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
.++|.+.|++....+. ..+......+.....+.|+.++-..+++......+...-..++.+++...+.+.-.++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4566677777666422 223333344555555666666555555555555566666777777777777777777777
Q ss_pred HHhcCC
Q 044815 634 KLLGKD 639 (675)
Q Consensus 634 ~~~~~~ 639 (675)
.++..+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 777754
No 468
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.82 E-value=42 Score=24.70 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=15.0
Q ss_pred ccCCHHHHHHHHHHHhcC
Q 044815 621 SEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~ 638 (675)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 479999999999887664
No 469
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.72 E-value=3.8e+02 Score=26.07 Aligned_cols=69 Identities=12% Similarity=0.308 Sum_probs=38.3
Q ss_pred cCCHHHHHHHH-HHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 044815 450 QAETKQALGLF-CRMVKAGLNPDIH----AYTTLIAAFCRQKKMKESEKFFQ-EAITAGLFPTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 450 ~~~~~~A~~~~-~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~ 523 (675)
...+++..... ++|.+.+ -|+.. .|..++++ ..|.+-.++-. .+++ ....|.-|+.+++.+|+.
T Consensus 268 e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQS 337 (412)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChH
Confidence 33455555544 4555555 45544 45555544 34433333222 2222 456788999999999987
Q ss_pred HHHHH
Q 044815 524 SSAVK 528 (675)
Q Consensus 524 ~~A~~ 528 (675)
+-.+-
T Consensus 338 EL~Ll 342 (412)
T KOG2297|consen 338 ELELL 342 (412)
T ss_pred HHHHH
Confidence 76543
No 470
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.53 E-value=9.9e+02 Score=30.84 Aligned_cols=309 Identities=11% Similarity=0.012 Sum_probs=161.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 044815 337 AMISGYCKEEKMNRAEMLLERM----KEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGL 412 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 412 (675)
++..+-.+.+.+.+|...++.- .+. .-...-|..+...|...+++|...-+...-.. .|+ ....|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 3344555677888888888773 221 11233445555688888888887777664221 222 22345556
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHH
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTT-LIAAFCRQKKMKES 491 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A 491 (675)
...|++..|...|+.+.+.+ ++...+++-++......|.++..+...+-..... .+....++. =+.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999998763 2336677777777777788877777665555442 223333332 23334566777766
Q ss_pred HHHHHHHHHCCCCCCHhHHHHH--HHHHHHcCCHH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHhcCCH
Q 044815 492 EKFFQEAITAGLFPTKETYTSM--ICGYLRDGNIS--SAVKYFQRMNQIGCAP--------D-NITYGALISGLCKQSKL 558 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~--~A~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~~~g~~ 558 (675)
...+. . -+..+|... +..+.+..+-| .-.+.++.+.+.-+.| . ...|..++....-.
T Consensus 1538 e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~--- 1607 (2382)
T KOG0890|consen 1538 ESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL--- 1607 (2382)
T ss_pred hhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH---
Confidence 66654 1 123333332 33333222211 1112333333211111 0 11222222221110
Q ss_pred HHHHHHHHHHHhCCCCCCHHH------HHH---HHHHHHHcCCHHHHHHHHHH----HhhC-----CChhhHHHHHHHHH
Q 044815 559 DEACQFYESMIGKGISPCEVT------RVT---LAYEYCKQGDSATAMIILES----LDKK-----LWIRTVNTLIRKLC 620 (675)
Q Consensus 559 ~~A~~~~~~~~~~g~~p~~~~------~~~---l~~~~~~~g~~~~A~~~~~~----~~~~-----~~~~~~~~l~~~~~ 620 (675)
+-....+.. .+..++..+ |.. ....+.+ ..+-+-.+++ ...+ .-...|-..++...
T Consensus 1608 -el~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1608 -ELENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred -HHHHHHHHh--hccCccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 000111111 112222111 111 1111222 2221112222 1112 12456888888888
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhcc
Q 044815 621 SEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 674 (675)
+.|+++.|...+-++.+.++ +..+.-.+..+.+.|+...|..++++.++.+
T Consensus 1682 ~aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hcccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 89999999888877777663 3456667777889999999999999887643
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.50 E-value=3e+02 Score=24.78 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=10.3
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 044815 482 FCRQKKMKESEKFFQEAI 499 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~ 499 (675)
....|++++|.+-++++.
T Consensus 39 ~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 39 LLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 344566666666665554
No 472
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=38.50 E-value=75 Score=20.72 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=29.4
Q ss_pred HHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q 044815 119 FFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSF 163 (675)
Q Consensus 119 ~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~ 163 (675)
|.+|+.....|+.....|..+..-+..++.+..+.+.++..++.|
T Consensus 1 lA~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw~~Y 45 (46)
T PF06855_consen 1 LANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAWSLY 45 (46)
T ss_dssp HHHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHHHHH
T ss_pred ChhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHHHHh
Confidence 356777777788877778777776666777767777766655443
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.88 E-value=4.5e+02 Score=26.74 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNP---DIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
..+.-+..-|...|+.+.|++.|.+.... +.. .+..|..+|..-.-.|+|.....+-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34556666677777777777777664433 111 233344444444556666666666666554
No 474
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.62 E-value=4.8e+02 Score=26.98 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------HhcCCCCCCHHH
Q 044815 276 SIKQAFELLEEMVRK---GW-KPNVYTHTVLIDGLCKKGWTEKAFRLFLKL-----------------VRSDNYKPNVHT 334 (675)
Q Consensus 276 ~~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------------~~~~~~~~~~~~ 334 (675)
+.++...++...... |+ ..+......++... .|+...++.+++.. ........+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred HHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcCCCCCHHHHH
Q 044815 335 YTAMISGYCKE---EKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGN-----FERAYDLMDLMGKEGCTPNIYAYN 406 (675)
Q Consensus 335 ~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~~~~~~~~ 406 (675)
...++.++.+. .+.+.|+..+..|.+.|..|....-..++.++...|. ..-|...++.....|++-......
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~ 309 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALA 309 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQ 430 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~ 430 (675)
..+-.++.+-+-..+...+..+.+
T Consensus 310 ~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 310 QAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHH
No 475
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=37.15 E-value=3e+02 Score=28.86 Aligned_cols=59 Identities=12% Similarity=0.283 Sum_probs=34.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
++..|-..+.-|...+++++|.++-+-.. +...|..+...-....+..-++..|..+.+
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~------eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~ 630 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ------EQTMWATLAAVAVRKHQMQISEIAYAAALQ 630 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc------chHHHHHHHHHHHhhccccHHHHHHHHhhc
Confidence 34456666666777777777777654322 344566666555555555555555555543
No 476
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=37.05 E-value=63 Score=28.04 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHHhhhcChhHHHHHHHHhh
Q 044815 95 LTHEQAITVVASLANEAGSMVALSFFYWAI 124 (675)
Q Consensus 95 l~~~~~~~v~~~~~~~~~~~~al~~f~~~~ 124 (675)
..++.+..++..+..-.+...|...|+|..
T Consensus 48 ~np~~~~~~l~~~~~l~d~aeafa~fDy~l 77 (164)
T PF07840_consen 48 NNPEKVLEILAELDKLEDDAEAFAEFDYQL 77 (164)
T ss_dssp H-HHHHHHHHHCCTTS-SSHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHhhhcccCHHHHHHHhHHH
Confidence 355666777776655556678888888864
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.01 E-value=1.7e+02 Score=31.54 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHhhCCCCCCHHHHHHH
Q 044815 158 CMVSSFAEIGRLKEGFSMVIEMTNNG--LPLITSTLNRVVGIACELGLVE------YAEEVFDEMCARGVCADASSYKLM 229 (675)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 229 (675)
+++.+|...|++..+.++++.+...+ -+.-...+|..++...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67778888999999999999887653 2233456888888888888765 3444444443 33477788887
Q ss_pred HHHHHHcCCHHHHHHHHHHHhH
Q 044815 230 VVAYCRMGRVTEADRWLSAMLD 251 (675)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~m~~ 251 (675)
+.+-...-...-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333334444444444
No 478
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.72 E-value=89 Score=30.17 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 044815 150 ERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLP 185 (675)
Q Consensus 150 ~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 185 (675)
.+....|+..|+.-.+.|+++.|+.++++..+.|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344556666666666666666666666666666643
No 479
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.77 E-value=2.6e+02 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=22.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCC
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVD 643 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 643 (675)
+..-+....|.+|+.-|-.+.+++++.+|.++
T Consensus 303 Lr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 303 LRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 44455566788888888888888888887754
No 480
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.59 E-value=5.8e+02 Score=28.44 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 277 IKQAFELLEEMVR-KGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 277 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.++....+..+.+ .|+..+......++... .|++..++.++++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4555555555443 46655555555555433 5778888877766543
No 481
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.18 E-value=5.2e+02 Score=26.33 Aligned_cols=136 Identities=15% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 044815 538 CAPDNITYGALISGLCKQ--SKLDEACQFYESMIGKGISPCE--------VTRVTLAYEYCKQGDSATAMIILESLDK-- 605 (675)
Q Consensus 538 ~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 605 (675)
+.+....|-.++-.+.-- .++.+|..+-+..+..-..-+. .+|..+...|-..|+...-..++.....
T Consensus 120 ~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 120 LPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q ss_pred ------CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 606 ------KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV---SLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 606 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.......|.+++.|...+.++.|..+..+..--....|.. .+..++.+-.-+++|..|.+.+-.++.+
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.06 E-value=2.2e+02 Score=24.26 Aligned_cols=55 Identities=15% Similarity=-0.024 Sum_probs=25.5
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 392 LMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 392 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.+.+.|++++.. -..+++.+.+.++.-.|.++++++.+.++..+..|...-++.+
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 334444443322 2334455555555555566666655555444444433333333
No 483
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.70 E-value=3.3e+02 Score=26.85 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGL---FPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN-ITYGALI 549 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~ 549 (675)
.|.-=.+-|.+..++..|...|.+-++... ..+...|+.-..+-...|++..|+.=-..... +.|+. ..|-.-.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 343444455555666666666665554321 12234444444444455555555555555444 33442 2333334
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 044815 550 SGLCKQSKLDEACQFYESMI 569 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~ 569 (675)
.++....++++|....++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44455555555555555543
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.45 E-value=2.3e+02 Score=22.58 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=7.0
Q ss_pred HHHhcCCHHHHHHHHHH
Q 044815 411 GLCKKGRVQEAYELLKK 427 (675)
Q Consensus 411 ~~~~~g~~~~A~~~~~~ 427 (675)
.|...|+.++|...+++
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 33344444444444444
No 485
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.30 E-value=4.8e+02 Score=25.64 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHH
Q 044815 275 GSIKQAFELLEEMVRKGW----KPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNR 350 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 350 (675)
+-.++|.+.|++....+. ..+......+.....+.|..+.-..++..... .++......++.+++...+.+.
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~ 219 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPEL 219 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHH
Confidence 345555555555554311 22333334444444455554443333333221 2344445555555555555555
Q ss_pred HHHHHHHHHHc
Q 044815 351 AEMLLERMKEQ 361 (675)
Q Consensus 351 A~~~~~~m~~~ 361 (675)
..++++.....
T Consensus 220 ~~~~l~~~l~~ 230 (324)
T PF11838_consen 220 LKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHcCC
Confidence 55555555543
No 486
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=32.77 E-value=7.6e+02 Score=27.83 Aligned_cols=54 Identities=11% Similarity=-0.179 Sum_probs=26.3
Q ss_pred HcCCHHHHHHHHHHHhhCCC--hh-hHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 589 KQGDSATAMIILESLDKKLW--IR-TVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 589 ~~g~~~~A~~~~~~~~~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
-+++.+.++.+++.+...+. +. .|...+..-...|+...|+.+++++...-..|
T Consensus 474 l~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~ 530 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDP 530 (881)
T ss_pred HhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence 34555556555555544322 22 33333333444555566665555555544444
No 487
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.40 E-value=6.6e+02 Score=26.98 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHH-------HhhCCCC------------C-CHHHHHH---HHHHHHHcCCHHHH
Q 044815 186 LITSTLNRVVGIACELGLVEYAEEVFDE-------MCARGVC------------A-DASSYKL---MVVAYCRMGRVTEA 242 (675)
Q Consensus 186 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~------------~-~~~~~~~---li~~~~~~g~~~~A 242 (675)
-...+...+...+..+|+.+-|..+.++ ...-.+. | |..-|-+ -+..+.+.|-+..|
T Consensus 282 YHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA 361 (665)
T KOG2422|consen 282 YHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTA 361 (665)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHH
Confidence 3445666666777778876665555444 3221111 1 2222222 24567788999999
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCC---HHHHH
Q 044815 243 DRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG---WKPNVYTHTVLIDGLCKKGW---TEKAF 316 (675)
Q Consensus 243 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~ 316 (675)
+++.+.+.+....-|+.....+|..|+-. ..+++-.++++++....+ .-||-.--.+|...|.+... -..|.
T Consensus 362 ~E~cKlllsLdp~eDPl~~l~~ID~~ALr--areYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 362 LEWCKLLLSLDPSEDPLGILYLIDIYALR--AREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHhhcCCcCCchhHHHHHHHHHHH--HHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHH
Confidence 99999999887766888888888887765 268888888888775432 23454433455555655544 34455
Q ss_pred HHHHHHHh
Q 044815 317 RLFLKLVR 324 (675)
Q Consensus 317 ~~~~~~~~ 324 (675)
..+.+..+
T Consensus 440 ~~l~qAl~ 447 (665)
T KOG2422|consen 440 NALLQALK 447 (665)
T ss_pred HHHHHHHH
Confidence 55555544
No 488
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.34 E-value=4.6e+02 Score=25.58 Aligned_cols=94 Identities=6% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHH
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ----------SKLDEA 561 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A 561 (675)
.++|+.+.+.++.|.-..+..+.-.+.+.=.+.+++.+|+.+.. |..-|..++..||.. |++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044815 562 CQFYESMIGKGISPCEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 594 (675)
+++++.- ...|......++..+......+
T Consensus 338 mkLLQ~y----p~tdi~~~l~~A~~Lr~~k~~~ 366 (370)
T KOG4567|consen 338 MKLLQNY----PTTDISKMLAVADSLRDKKHRS 366 (370)
T ss_pred HHHHhcC----CCCCHHHHHHHHHHHHhccccC
No 489
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.28 E-value=2.6e+02 Score=22.33 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
...++|..+.+-+...+-. ...+--.-+..+...|++++|+.. ......||...|-.|-.. +.|--+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~-----~~~~~~pdL~p~~AL~a~--klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLL-----PQCHCYPDLEPWAALCAW--KLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHH-----HTTS--GGGHHHHHHHHH--HCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHh-----cccCCCccHHHHHHHHHH--hhccHHHHHHH
Confidence 4566777666666665321 122222233456667777777211 122335666666655433 55666666666
Q ss_pred HHHHHHc
Q 044815 355 LERMKEQ 361 (675)
Q Consensus 355 ~~~m~~~ 361 (675)
+.++..+
T Consensus 92 l~rla~~ 98 (116)
T PF09477_consen 92 LTRLASS 98 (116)
T ss_dssp HHHHCT-
T ss_pred HHHHHhC
Confidence 6655543
No 490
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.00 E-value=8.9e+02 Score=28.37 Aligned_cols=29 Identities=7% Similarity=0.395 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHHHHHC
Q 044815 508 ETYTSMICGYLRDG--NISSAVKYFQRMNQI 536 (675)
Q Consensus 508 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 536 (675)
.....++.+|++.+ ++++|+.++.++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 33455666666666 666777776666653
No 491
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.14 E-value=5.3e+02 Score=25.53 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 044815 420 EAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKA 466 (675)
Q Consensus 420 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 466 (675)
.-+.+++++++.+ +.+...+..++..+.+..+.++..+-++++...
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3344444444442 233344444445555555555555555555544
No 492
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.04 E-value=2.6e+02 Score=23.79 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 533 MNQIGCAPDNITYGALISGLCKQ-SKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|.+.-+..+...|-+
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44456655543 22344444443 45667788888887776666667777666777766644
No 493
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=30.73 E-value=1.2e+02 Score=18.11 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH
Q 044815 558 LDEACQFYESMIGKGISPCEVTR 580 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~ 580 (675)
++.|..+|++.+. ..|+..++
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 4555555555555 33444443
No 494
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.65 E-value=7e+02 Score=26.42 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 044815 366 NTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTP 400 (675)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 400 (675)
+...+..++.+....+....|+.+++++.+.|..|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 34444444444433333445555555555555443
No 495
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=5.3e+02 Score=24.89 Aligned_cols=97 Identities=14% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQ----RELQADKITYTI-LLSEHLKQAETKQALGLFCRMVKAGLNPDI---- 472 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---- 472 (675)
...+..+...||+.++.+.+.+.+.+..+ .|.+.|.....+ |.-.|....-+++-++..+.|.+.|...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34455566666666666666555544332 234444332222 122233333455666666666666543322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 473 HAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
.+|..+-. ....++.+|-.++.+...
T Consensus 195 K~Y~Gi~~--m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIFK--MMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHhhHHHHHHHHHHhc
Confidence 22322211 123456666666655543
No 496
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.78 E-value=3.1e+02 Score=24.07 Aligned_cols=59 Identities=10% Similarity=-0.095 Sum_probs=31.9
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 534 NQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 534 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
.+.|++.+..-. .++..+...++.-.|.++++.+.+.+..++..|.+.-+..+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555443322 33334444445556677777776666555566666666666665543
No 497
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=28.58 E-value=7.2e+02 Score=26.22 Aligned_cols=210 Identities=13% Similarity=0.093 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHHHcCCHHH
Q 044815 454 KQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ------KKMKESEKFFQEAITAG-LFP-TKETYTSMICGYLRDGNISS 525 (675)
Q Consensus 454 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~ 525 (675)
+....+|++..+. -|+...++..|..|... ..+..-..+|+...+.+ ..+ ....|..+.-.++......+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3344666666653 44555666666655432 23444555555555432 222 34456666656655544332
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC-HH-----HHH
Q 044815 526 -AVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK-GISPCEVTRVTLAYEYCKQGD-SA-----TAM 597 (675)
Q Consensus 526 -A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~-~~-----~A~ 597 (675)
|..+-.+ ++..+...|..-+....+... .+.-+|.++... ...+...... .+.-...|+ .+ ...
T Consensus 377 ~a~~l~~e----~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~--~w~s~~~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 377 VAVKLTTE----LFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLI--SWASASEGDSLQEDTLDLII 448 (568)
T ss_pred HHHHhhHH----HhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHH--HHHHHhhccchhHHHHHHHH
Confidence 3333222 234555566555554442211 222223332110 0011111111 111111222 22 122
Q ss_pred HHHHHHhhCCChhh-HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hcCchhHHHHHHHHHHhcc
Q 044815 598 IILESLDKKLWIRT-VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY--ESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 598 ~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~ 674 (675)
..+..+.. ++..+ -+.+++-+.+.|-+.+|...|.+.....| |....|...+..-. .+.+..-++++++.++..-
T Consensus 449 ~a~~s~~~-~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp-~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSVIG-ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPP-FSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHhcC-CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCC-ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 22222222 33333 36788889999999999999999887755 47888877776533 3345777888888877654
Q ss_pred C
Q 044815 675 G 675 (675)
Q Consensus 675 ~ 675 (675)
|
T Consensus 527 g 527 (568)
T KOG2396|consen 527 G 527 (568)
T ss_pred C
Confidence 4
No 498
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.54 E-value=6.8e+02 Score=29.85 Aligned_cols=154 Identities=18% Similarity=0.105 Sum_probs=92.6
Q ss_pred HHHHhcCCHHHHHH------HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHH
Q 044815 480 AAFCRQKKMKESEK------FFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ-----IGCA-P-DNITYG 546 (675)
Q Consensus 480 ~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p-~~~~~~ 546 (675)
+.....|.+.+|.+ ++......--.+....|..+...+-+.|+.++|+..-.+..- .|.. | +...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33445566666666 555333322234566788888889999999999886554321 1222 2 244566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhC----------CCh
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGK-----GI-SPCE-VTRVTLAYEYCKQGDSATAMIILESLDKK----------LWI 609 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~ 609 (675)
.+.-.+...+....|...+.+.... |- .|.. .+...+...+...++++.|.++++.+.+. ...
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666667778888887777642 21 3433 33344555566668888899988887552 123
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHH
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
..+..+.+.+...+.+..|....+
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
Confidence 345566666666666666555444
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.38 E-value=4.5e+02 Score=26.18 Aligned_cols=83 Identities=10% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK-----KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
..++..-+...-.---.++...+++.+.+ +....-|-++++.+...|.+++.+.+|++++..|..|-......++
T Consensus 103 n~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 103 NKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q ss_pred HHHHhcCc
Q 044815 652 NACYESNK 659 (675)
Q Consensus 652 ~~~~~~g~ 659 (675)
+++-..+.
T Consensus 183 diL~~k~~ 190 (353)
T PF15297_consen 183 DILKMKSQ 190 (353)
T ss_pred HHHHhhhh
No 500
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.37 E-value=9.4e+02 Score=27.48 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044815 522 NISSAVKYFQRMNQIGCAPDNI--TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR 580 (675)
Q Consensus 522 ~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 580 (675)
..+.+.++-.-.....+.|-.. +....+..+.+.+++..|..+-.++++.+..|.....
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3445544444444445566543 5566778888999999999999999887766654333
Done!