Query 044815
Match_columns 675
No_of_seqs 818 out of 3943
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 12:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-40 8.8E-45 361.5 44.5 485 154-655 85-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.8E-40 1.3E-44 360.2 43.1 471 186-673 82-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-27 7.8E-32 244.0 49.9 374 275-659 13-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-27 1.5E-31 241.9 48.3 359 302-672 5-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 3E-29 1E-33 262.1 26.0 184 370-553 29-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.5E-29 1.2E-33 261.6 25.9 204 280-484 9-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.5E-24 5E-29 232.0 40.1 449 188-650 6-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 3E-24 1E-28 229.6 40.9 438 153-605 6-477 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.6E-23 1.6E-27 216.4 41.7 341 295-669 25-405 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 6.2E-23 2.1E-27 215.4 41.9 389 240-665 9-446 (450)
11 3fp2_A TPR repeat-containing p 99.9 1E-22 3.5E-27 219.0 36.9 437 187-646 24-498 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.9E-22 1.4E-26 214.4 39.7 432 153-605 25-490 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.1E-20 2.4E-24 185.5 42.0 330 295-658 2-354 (359)
14 2xm6_A Protein corresponding t 99.9 2.6E-18 9E-23 181.9 52.1 353 275-655 57-451 (490)
15 2xm6_A Protein corresponding t 99.9 6.5E-18 2.2E-22 178.9 54.2 363 280-673 26-432 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 1.8E-19 6.2E-24 182.5 38.7 312 332-673 3-335 (359)
17 3hym_B Cell division cycle pro 99.9 3.4E-19 1.1E-23 178.3 33.9 291 365-661 20-322 (330)
18 1xi4_A Clathrin heavy chain; a 99.9 3.5E-16 1.2E-20 172.7 59.5 407 92-556 980-1415(1630)
19 2ooe_A Cleavage stimulation fa 99.9 4.4E-17 1.5E-21 174.3 48.0 428 211-673 2-492 (530)
20 3hym_B Cell division cycle pro 99.8 1.1E-18 3.7E-23 174.6 31.0 268 399-672 19-298 (330)
21 1fch_A Peroxisomal targeting s 99.8 2.3E-19 7.7E-24 182.7 25.7 289 379-672 37-358 (368)
22 1xi4_A Clathrin heavy chain; a 99.8 4.2E-15 1.4E-19 164.2 58.4 471 130-666 870-1377(1630)
23 2ooe_A Cleavage stimulation fa 99.8 3.2E-16 1.1E-20 167.6 46.5 421 185-640 10-494 (530)
24 1fch_A Peroxisomal targeting s 99.8 4.9E-18 1.7E-22 172.8 27.5 301 308-634 37-355 (368)
25 4g1t_A Interferon-induced prot 99.8 1.3E-16 4.5E-21 168.3 37.9 361 297-672 52-458 (472)
26 4eqf_A PEX5-related protein; a 99.8 2.1E-18 7.2E-23 175.4 20.2 265 403-671 66-354 (365)
27 1b89_A Protein (clathrin heavy 99.8 2.9E-18 1E-22 170.3 20.1 379 200-633 15-412 (449)
28 4g1t_A Interferon-induced prot 99.8 2.6E-16 8.9E-21 165.9 36.3 385 221-641 49-462 (472)
29 3cv0_A Peroxisome targeting si 99.8 3.8E-17 1.3E-21 163.0 26.5 261 406-672 25-314 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 1.1E-16 3.7E-21 156.1 28.1 270 376-665 8-286 (291)
31 4eqf_A PEX5-related protein; a 99.8 4.8E-17 1.6E-21 165.3 26.3 274 295-602 64-352 (365)
32 3mkr_A Coatomer subunit epsilo 99.8 6.5E-17 2.2E-21 157.7 25.9 250 409-672 6-263 (291)
33 1b89_A Protein (clathrin heavy 99.8 6.4E-18 2.2E-22 167.9 18.2 281 275-600 17-305 (449)
34 3cv0_A Peroxisome targeting si 99.8 6.7E-16 2.3E-20 153.9 30.3 228 337-570 26-268 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.7 7.4E-18 2.5E-22 180.4 12.4 152 295-451 126-286 (1134)
36 3uq3_A Heat shock protein STI1 99.7 1.7E-15 5.8E-20 145.3 25.4 224 402-639 5-237 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6E-22 177.5 11.2 122 329-450 124-249 (1134)
38 3e4b_A ALGK; tetratricopeptide 99.7 2E-15 6.8E-20 157.2 26.5 370 275-672 17-420 (452)
39 1ouv_A Conserved hypothetical 99.7 5E-14 1.7E-18 136.4 33.3 226 401-641 5-254 (273)
40 2pl2_A Hypothetical conserved 99.7 2.7E-15 9.4E-20 139.6 21.5 197 469-670 2-211 (217)
41 3e4b_A ALGK; tetratricopeptide 99.7 2.3E-15 8E-20 156.7 22.7 346 301-673 8-387 (452)
42 3uq3_A Heat shock protein STI1 99.7 8.4E-15 2.9E-19 140.4 25.0 220 439-672 7-235 (258)
43 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.7E-18 134.1 32.4 221 437-672 6-250 (273)
44 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.7E-15 1.9E-19 143.2 22.6 243 415-667 18-269 (275)
45 3u4t_A TPR repeat-containing p 99.7 4.3E-14 1.5E-18 136.7 27.2 249 404-658 5-269 (272)
46 2pl2_A Hypothetical conserved 99.6 4.7E-14 1.6E-18 131.2 22.8 192 438-635 6-211 (217)
47 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5.2E-18 131.2 26.5 201 437-641 37-241 (252)
48 2h6f_A Protein farnesyltransfe 99.6 1.2E-13 4.2E-18 139.1 25.9 248 402-656 97-365 (382)
49 2h6f_A Protein farnesyltransfe 99.6 1.5E-13 5E-18 138.5 25.2 227 437-670 97-344 (382)
50 3u4t_A TPR repeat-containing p 99.6 9.9E-14 3.4E-18 134.2 23.1 232 438-673 4-250 (272)
51 4a1s_A PINS, partner of inscut 99.6 1.6E-14 5.5E-19 149.2 18.4 276 368-672 49-371 (411)
52 4e6h_A MRNA 3'-END-processing 99.6 6.5E-11 2.2E-15 127.2 45.7 442 201-673 45-570 (679)
53 2q7f_A YRRB protein; TPR, prot 99.6 9E-14 3.1E-18 131.9 21.1 213 437-654 23-237 (243)
54 3sf4_A G-protein-signaling mod 99.6 4.3E-14 1.5E-18 145.5 20.1 303 329-660 6-363 (406)
55 2ho1_A Type 4 fimbrial biogene 99.6 5.7E-13 2E-17 127.1 26.5 197 473-672 38-237 (252)
56 2vq2_A PILW, putative fimbrial 99.6 5.6E-13 1.9E-17 124.6 25.9 208 435-647 6-219 (225)
57 2q7f_A YRRB protein; TPR, prot 99.6 9.6E-14 3.3E-18 131.7 20.7 200 470-673 21-222 (243)
58 2vq2_A PILW, putative fimbrial 99.6 1.4E-12 4.7E-17 121.9 28.1 200 402-604 8-209 (225)
59 3sf4_A G-protein-signaling mod 99.6 6.8E-14 2.3E-18 144.0 20.1 271 402-672 9-335 (406)
60 4e6h_A MRNA 3'-END-processing 99.6 9.7E-11 3.3E-15 125.9 45.0 448 166-643 45-575 (679)
61 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.5E-13 8.5E-18 131.5 22.3 217 346-570 19-243 (275)
62 3ro2_A PINS homolog, G-protein 99.6 9.2E-14 3.2E-18 138.7 19.2 269 372-672 10-331 (338)
63 4a1s_A PINS, partner of inscut 99.6 1.2E-13 4.2E-18 142.5 20.5 277 332-640 48-374 (411)
64 3vtx_A MAMA; tetratricopeptide 99.5 8.9E-13 3E-17 119.0 22.4 163 507-672 5-169 (184)
65 4abn_A Tetratricopeptide repea 99.5 2.4E-13 8E-18 142.5 20.1 210 453-669 84-317 (474)
66 3ulq_A Response regulator aspa 99.5 1.3E-12 4.4E-17 133.4 24.2 228 443-672 109-367 (383)
67 3ro2_A PINS homolog, G-protein 99.5 6E-13 2E-17 132.8 20.2 281 332-641 5-335 (338)
68 3ulq_A Response regulator aspa 99.5 2.9E-12 9.9E-17 130.8 24.5 231 408-638 109-368 (383)
69 3nf1_A KLC 1, kinesin light ch 99.5 2.2E-13 7.7E-18 134.4 15.6 242 402-672 27-306 (311)
70 2ond_A Cleavage stimulation fa 99.5 5.1E-11 1.7E-15 117.3 30.5 217 419-641 33-273 (308)
71 3vtx_A MAMA; tetratricopeptide 99.4 1.7E-11 5.8E-16 110.5 22.7 167 471-641 4-173 (184)
72 4gyw_A UDP-N-acetylglucosamine 99.4 2.6E-12 8.9E-17 139.8 20.2 161 507-672 9-173 (723)
73 4abn_A Tetratricopeptide repea 99.4 6.6E-12 2.3E-16 131.4 21.1 207 383-598 84-313 (474)
74 3q15_A PSP28, response regulat 99.4 2.8E-11 9.7E-16 123.1 25.2 226 444-672 108-364 (378)
75 2ond_A Cleavage stimulation fa 99.4 1.7E-10 6E-15 113.4 29.5 162 439-604 101-268 (308)
76 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6E-17 127.9 15.2 247 366-640 26-309 (311)
77 1hz4_A MALT regulatory protein 99.4 1E-10 3.5E-15 118.8 27.2 268 372-639 19-323 (373)
78 3q15_A PSP28, response regulat 99.4 5.6E-11 1.9E-15 120.9 24.7 231 408-638 107-365 (378)
79 3as5_A MAMA; tetratricopeptide 99.4 4.4E-11 1.5E-15 107.6 20.1 161 509-672 10-172 (186)
80 4i17_A Hypothetical protein; T 99.4 3.6E-10 1.2E-14 105.8 26.6 205 436-653 6-223 (228)
81 1hz4_A MALT regulatory protein 99.4 6.5E-10 2.2E-14 112.7 30.3 232 405-641 96-352 (373)
82 4i17_A Hypothetical protein; T 99.3 2.1E-10 7.1E-15 107.4 21.6 191 470-672 5-208 (228)
83 3mv2_B Coatomer subunit epsilo 99.3 2.6E-09 8.8E-14 101.8 27.3 246 377-647 23-290 (310)
84 3edt_B KLC 2, kinesin light ch 99.3 6.5E-11 2.2E-15 114.7 15.9 225 448-673 12-281 (283)
85 1qqe_A Vesicular transport pro 99.3 1.6E-10 5.6E-15 112.6 18.0 173 417-604 32-226 (292)
86 4gyw_A UDP-N-acetylglucosamine 99.2 2.3E-10 7.7E-15 124.6 19.9 161 437-603 9-171 (723)
87 3as5_A MAMA; tetratricopeptide 99.2 1.8E-09 6.2E-14 96.9 21.7 160 407-570 13-172 (186)
88 1qqe_A Vesicular transport pro 99.2 1.2E-09 4.1E-14 106.4 18.9 174 382-570 32-227 (292)
89 3edt_B KLC 2, kinesin light ch 99.2 5.3E-10 1.8E-14 108.2 15.9 206 295-501 42-281 (283)
90 3mv2_B Coatomer subunit epsilo 99.1 4.4E-09 1.5E-13 100.2 21.1 240 410-672 21-281 (310)
91 3qky_A Outer membrane assembly 99.1 2.3E-09 7.8E-14 102.6 19.2 185 470-672 13-223 (261)
92 3rjv_A Putative SEL1 repeat pr 99.1 5.8E-09 2E-13 96.0 20.8 176 455-640 4-199 (212)
93 2pzi_A Probable serine/threoni 99.1 6.1E-10 2.1E-14 122.0 16.2 171 483-659 402-583 (681)
94 2r5s_A Uncharacterized protein 99.1 9E-10 3.1E-14 98.2 14.0 162 509-673 8-173 (176)
95 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.4E-09 1.5E-13 98.0 19.2 182 471-672 3-212 (225)
96 3qky_A Outer membrane assembly 99.1 2.9E-09 9.8E-14 101.9 18.2 210 434-664 12-252 (261)
97 2uy1_A Cleavage stimulation fa 99.1 2.3E-07 7.8E-12 96.8 33.3 357 275-673 28-413 (493)
98 3rjv_A Putative SEL1 repeat pr 99.1 1.9E-08 6.7E-13 92.5 22.1 171 490-672 4-196 (212)
99 2fo7_A Synthetic consensus TPR 99.1 5.5E-09 1.9E-13 88.0 17.0 128 510-672 4-131 (136)
100 3qou_A Protein YBBN; thioredox 99.1 3E-09 1E-13 103.2 16.9 164 506-673 116-284 (287)
101 2uy1_A Cleavage stimulation fa 99.1 1.3E-06 4.5E-11 91.1 38.1 105 145-252 6-118 (493)
102 3dra_A Protein farnesyltransfe 99.1 8.2E-08 2.8E-12 92.5 26.2 228 417-650 48-299 (306)
103 4ga2_A E3 SUMO-protein ligase 99.1 3.1E-10 1.1E-14 98.1 8.1 142 513-659 3-149 (150)
104 2ifu_A Gamma-SNAP; membrane fu 99.0 1.2E-08 4.1E-13 100.1 19.3 130 509-640 78-225 (307)
105 3urz_A Uncharacterized protein 99.0 4.9E-09 1.7E-13 96.2 15.3 166 472-641 4-189 (208)
106 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.6E-13 84.5 17.1 129 473-604 2-130 (136)
107 2vsy_A XCC0866; transferase, g 99.0 7.7E-09 2.6E-13 111.2 17.5 162 485-651 2-169 (568)
108 4ga2_A E3 SUMO-protein ligase 99.0 9.9E-10 3.4E-14 94.9 8.2 122 548-672 3-128 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.5E-08 1.2E-12 91.8 19.0 186 436-641 3-216 (225)
110 3dra_A Protein farnesyltransfe 99.0 7.6E-07 2.6E-11 85.8 28.7 216 384-604 50-285 (306)
111 3urz_A Uncharacterized protein 98.9 5.8E-08 2E-12 89.0 19.3 129 443-577 60-190 (208)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 9.3E-09 3.2E-13 100.9 14.1 171 485-671 29-222 (307)
113 2pzi_A Probable serine/threoni 98.9 2.2E-08 7.5E-13 109.6 18.0 173 413-592 402-583 (681)
114 3gyz_A Chaperone protein IPGC; 98.9 1.7E-08 5.9E-13 86.6 13.7 93 579-672 38-132 (151)
115 3u3w_A Transcriptional activat 98.9 1.4E-07 4.9E-12 91.7 22.1 160 513-672 81-265 (293)
116 4gco_A Protein STI-1; structur 98.9 2.2E-08 7.4E-13 83.3 13.6 113 538-653 8-124 (126)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4.2E-08 1.4E-12 90.3 16.8 123 545-672 9-149 (213)
118 2vsy_A XCC0866; transferase, g 98.9 3.5E-08 1.2E-12 106.0 18.5 151 450-605 2-156 (568)
119 4gco_A Protein STI-1; structur 98.9 2E-08 6.7E-13 83.6 12.4 99 573-672 8-109 (126)
120 3qou_A Protein YBBN; thioredox 98.9 5.3E-08 1.8E-12 94.3 16.8 163 469-636 114-282 (287)
121 2qfc_A PLCR protein; TPR, HTH, 98.9 1.5E-07 5.1E-12 91.5 20.0 161 511-671 79-264 (293)
122 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-08 4.8E-13 87.3 10.0 110 528-641 8-121 (148)
123 1p5q_A FKBP52, FK506-binding p 98.8 5E-08 1.7E-12 96.8 15.2 129 542-673 147-294 (336)
124 2r5s_A Uncharacterized protein 98.8 6.3E-08 2.2E-12 86.1 14.3 55 375-430 14-68 (176)
125 1a17_A Serine/threonine protei 98.8 1.5E-07 5.2E-12 82.4 16.4 126 544-672 15-145 (166)
126 4f3v_A ESX-1 secretion system 98.8 7.8E-08 2.7E-12 90.4 15.0 194 449-650 18-247 (282)
127 2c2l_A CHIP, carboxy terminus 98.8 2.7E-08 9.2E-13 96.0 11.7 194 471-672 3-198 (281)
128 4f3v_A ESX-1 secretion system 98.8 2.7E-07 9.1E-12 86.8 17.7 124 478-604 108-235 (282)
129 3u3w_A Transcriptional activat 98.8 1.1E-06 3.7E-11 85.4 22.5 127 303-429 82-223 (293)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.7E-07 1.3E-11 83.9 17.9 126 475-605 9-149 (213)
131 3q7a_A Farnesyltransferase alp 98.7 3.5E-06 1.2E-10 82.0 24.8 30 643-672 301-330 (349)
132 2vyi_A SGTA protein; chaperone 98.7 3E-07 1E-11 76.6 14.5 117 542-661 12-131 (131)
133 2lni_A Stress-induced-phosphop 98.7 2.2E-07 7.5E-12 77.8 13.1 115 542-659 16-133 (133)
134 3gw4_A Uncharacterized protein 98.7 1.8E-07 6.2E-12 85.1 13.3 153 484-637 4-175 (203)
135 1na0_A Designed protein CTPR3; 98.7 7.8E-07 2.7E-11 73.3 15.5 115 542-658 9-125 (125)
136 3upv_A Heat shock protein STI1 98.7 2.6E-07 9E-12 76.7 12.5 109 542-653 4-121 (126)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 2E-06 6.9E-11 83.5 20.6 159 443-602 81-262 (293)
138 2xcb_A PCRH, regulatory protei 98.7 2.1E-07 7.2E-12 79.3 12.0 98 542-641 18-118 (142)
139 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.7E-12 83.4 11.7 122 517-641 20-147 (177)
140 1hxi_A PEX5, peroxisome target 98.6 2.3E-07 8E-12 76.4 11.4 92 580-672 20-113 (121)
141 3gyz_A Chaperone protein IPGC; 98.6 3E-07 1E-11 78.8 12.2 102 538-641 31-136 (151)
142 3sz7_A HSC70 cochaperone (SGT) 98.6 4.5E-07 1.5E-11 79.4 12.5 102 541-645 10-114 (164)
143 3gw4_A Uncharacterized protein 98.6 5.7E-07 2E-11 81.8 13.4 157 448-605 3-175 (203)
144 2vgx_A Chaperone SYCD; alterna 98.6 1.6E-07 5.5E-12 80.6 9.0 109 493-605 8-117 (148)
145 3q49_B STIP1 homology and U bo 98.6 9.4E-07 3.2E-11 74.5 13.4 114 540-655 7-127 (137)
146 2fbn_A 70 kDa peptidylprolyl i 98.6 9.2E-07 3.1E-11 80.2 14.1 120 544-664 40-176 (198)
147 4gcn_A Protein STI-1; structur 98.6 4.6E-07 1.6E-11 75.3 11.0 105 542-650 8-122 (127)
148 1elw_A TPR1-domain of HOP; HOP 98.6 2.5E-06 8.4E-11 69.4 15.4 109 542-653 4-115 (118)
149 2dba_A Smooth muscle cell asso 98.6 2.3E-06 7.8E-11 73.0 15.7 112 541-655 27-144 (148)
150 3q7a_A Farnesyltransferase alp 98.5 5.3E-05 1.8E-09 73.7 26.7 177 165-347 66-257 (349)
151 3dss_A Geranylgeranyl transfer 98.5 5.6E-05 1.9E-09 73.2 26.7 242 402-651 26-316 (331)
152 3upv_A Heat shock protein STI1 98.5 1.7E-06 5.8E-11 71.7 13.6 94 508-604 5-99 (126)
153 2e2e_A Formate-dependent nitri 98.5 9.4E-07 3.2E-11 78.4 12.6 119 483-605 21-143 (177)
154 2lni_A Stress-induced-phosphop 98.5 1.3E-06 4.3E-11 73.0 12.4 97 576-673 15-113 (133)
155 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.1E-06 3.6E-11 91.3 13.8 118 507-628 268-404 (457)
156 1elw_A TPR1-domain of HOP; HOP 98.5 1.6E-06 5.5E-11 70.5 12.3 96 577-673 4-101 (118)
157 1a17_A Serine/threonine protei 98.5 7.4E-06 2.5E-10 71.4 17.3 128 297-428 14-143 (166)
158 2hr2_A Hypothetical protein; a 98.5 1.6E-06 5.5E-11 73.4 12.0 61 611-672 59-130 (159)
159 2c2l_A CHIP, carboxy terminus 98.5 1.2E-06 4.3E-11 84.3 13.0 192 402-604 4-197 (281)
160 3sz7_A HSC70 cochaperone (SGT) 98.5 1.4E-06 4.7E-11 76.3 11.9 97 506-605 10-107 (164)
161 2xcb_A PCRH, regulatory protei 98.4 1.5E-06 5E-11 73.9 11.5 95 508-605 19-114 (142)
162 1p5q_A FKBP52, FK506-binding p 98.4 3.5E-06 1.2E-10 83.4 15.7 123 471-596 146-283 (336)
163 3ro3_A PINS homolog, G-protein 98.4 1.5E-06 5E-11 75.5 11.3 129 544-672 11-157 (164)
164 1na0_A Designed protein CTPR3; 98.4 1.3E-05 4.4E-10 65.7 16.6 97 297-396 10-106 (125)
165 3dss_A Geranylgeranyl transfer 98.4 0.00019 6.6E-09 69.4 26.4 220 379-605 41-303 (331)
166 4b4t_Q 26S proteasome regulato 98.4 7.6E-06 2.6E-10 84.4 17.7 92 580-671 138-243 (434)
167 2vyi_A SGTA protein; chaperone 98.4 1.2E-05 4E-10 66.7 15.6 118 296-417 12-129 (131)
168 2xev_A YBGF; tetratricopeptide 98.4 3.8E-06 1.3E-10 69.8 12.5 103 546-651 6-117 (129)
169 2xev_A YBGF; tetratricopeptide 98.4 8E-06 2.8E-10 67.7 13.8 92 510-605 5-104 (129)
170 3q49_B STIP1 homology and U bo 98.4 5.5E-06 1.9E-10 69.6 12.8 98 505-605 7-105 (137)
171 2if4_A ATFKBP42; FKBP-like, al 98.3 1.3E-06 4.4E-11 86.6 9.7 146 507-672 179-327 (338)
172 4gcn_A Protein STI-1; structur 98.3 6.9E-06 2.4E-10 68.1 12.7 94 476-570 12-111 (127)
173 2dba_A Smooth muscle cell asso 98.3 6.7E-06 2.3E-10 70.1 13.0 97 576-673 27-128 (148)
174 2kck_A TPR repeat; tetratricop 98.3 4.6E-06 1.6E-10 67.0 11.3 96 544-640 8-108 (112)
175 3rkv_A Putative peptidylprolyl 98.3 4.5E-06 1.5E-10 72.7 11.7 116 542-658 11-146 (162)
176 1elr_A TPR2A-domain of HOP; HO 98.3 3.5E-06 1.2E-10 70.0 10.6 113 542-657 4-125 (131)
177 1hxi_A PEX5, peroxisome target 98.3 5E-06 1.7E-10 68.2 11.2 94 546-641 21-117 (121)
178 3rkv_A Putative peptidylprolyl 98.3 5.6E-06 1.9E-10 72.1 12.1 98 506-605 10-125 (162)
179 3k9i_A BH0479 protein; putativ 98.3 1.4E-06 4.7E-11 71.2 7.1 92 554-646 2-97 (117)
180 1elr_A TPR2A-domain of HOP; HO 98.3 1.2E-05 4E-10 66.6 13.1 111 507-618 4-121 (131)
181 3ro3_A PINS homolog, G-protein 98.3 4.5E-06 1.6E-10 72.3 10.9 130 509-638 11-158 (164)
182 1wao_1 Serine/threonine protei 98.3 1.7E-06 5.9E-11 90.1 9.3 113 553-668 17-134 (477)
183 3k9i_A BH0479 protein; putativ 98.3 1.6E-06 5.4E-11 70.8 7.2 85 519-605 2-89 (117)
184 1ihg_A Cyclophilin 40; ppiase 98.3 6.9E-06 2.4E-10 82.3 13.3 138 507-666 223-363 (370)
185 2kck_A TPR repeat; tetratricop 98.2 9.8E-06 3.3E-10 65.0 11.1 95 579-673 8-106 (112)
186 2hr2_A Hypothetical protein; a 98.2 5.7E-06 1.9E-10 70.0 9.6 94 546-641 15-134 (159)
187 2fbn_A 70 kDa peptidylprolyl i 98.2 1.8E-05 6.2E-10 71.5 13.9 94 543-638 89-186 (198)
188 4b4t_Q 26S proteasome regulato 98.2 3.5E-05 1.2E-09 79.4 17.8 198 408-605 10-244 (434)
189 1wao_1 Serine/threonine protei 98.2 9.1E-06 3.1E-10 84.6 13.2 118 480-601 14-134 (477)
190 1klx_A Cysteine rich protein B 98.2 2.5E-05 8.5E-10 65.7 13.5 112 521-640 9-128 (138)
191 1dce_A Protein (RAB geranylger 98.2 6.6E-05 2.2E-09 79.6 19.4 171 488-662 45-244 (567)
192 2l6j_A TPR repeat-containing p 98.1 2.9E-06 9.8E-11 68.3 5.1 92 577-669 4-103 (111)
193 1klx_A Cysteine rich protein B 98.1 8.2E-05 2.8E-09 62.5 13.9 108 557-672 10-125 (138)
194 2if4_A ATFKBP42; FKBP-like, al 98.0 1.1E-05 3.7E-10 79.9 9.1 149 472-641 179-331 (338)
195 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 4.6E-05 1.6E-09 78.9 14.0 130 471-603 267-412 (457)
196 3ma5_A Tetratricopeptide repea 98.0 1.4E-05 4.8E-10 62.9 7.9 82 577-658 7-91 (100)
197 3n71_A Histone lysine methyltr 98.0 5.3E-05 1.8E-09 78.3 14.2 89 515-603 317-419 (490)
198 2kat_A Uncharacterized protein 98.0 2.1E-05 7.2E-10 63.7 8.9 98 559-658 2-103 (115)
199 1dce_A Protein (RAB geranylger 98.0 0.00026 8.8E-09 75.0 19.2 147 522-672 44-220 (567)
200 1ihg_A Cyclophilin 40; ppiase 98.0 3.9E-05 1.3E-09 76.8 12.2 113 543-673 224-336 (370)
201 1zu2_A Mitochondrial import re 98.0 1.1E-05 3.6E-10 68.2 6.1 80 592-672 17-119 (158)
202 1na3_A Designed protein CTPR2; 97.9 7.5E-05 2.6E-09 57.1 10.3 80 578-658 10-91 (91)
203 3n71_A Histone lysine methyltr 97.8 0.00011 3.8E-09 75.8 11.1 127 479-605 316-463 (490)
204 2l6j_A TPR repeat-containing p 97.7 3.5E-05 1.2E-09 61.7 5.3 92 506-600 3-101 (111)
205 2kat_A Uncharacterized protein 97.7 0.00014 4.9E-09 58.7 8.9 78 525-605 3-81 (115)
206 1zu2_A Mitochondrial import re 97.7 6.8E-05 2.3E-09 63.3 6.5 103 518-645 13-126 (158)
207 3ma5_A Tetratricopeptide repea 97.5 0.00031 1E-08 55.0 8.4 62 541-604 6-68 (100)
208 1na3_A Designed protein CTPR2; 97.5 0.0004 1.4E-08 52.9 8.2 64 609-673 9-72 (91)
209 2kc7_A BFR218_protein; tetratr 97.4 0.00031 1.1E-08 54.7 6.9 59 583-641 6-67 (99)
210 3bee_A Putative YFRE protein; 97.4 0.00062 2.1E-08 52.2 8.1 66 576-641 5-75 (93)
211 3qww_A SET and MYND domain-con 97.3 0.00074 2.5E-08 68.5 9.8 83 554-636 310-409 (433)
212 1pc2_A Mitochondria fission pr 97.2 0.0047 1.6E-07 51.4 12.2 86 558-645 14-106 (152)
213 2kc7_A BFR218_protein; tetratr 97.1 0.00098 3.3E-08 51.8 7.0 59 614-673 5-64 (99)
214 3qwp_A SET and MYND domain-con 97.1 0.004 1.4E-07 63.2 13.1 91 547-637 292-399 (429)
215 3qww_A SET and MYND domain-con 97.0 0.002 6.9E-08 65.3 9.8 87 519-605 310-410 (433)
216 3mkq_A Coatomer beta'-subunit; 97.0 0.035 1.2E-06 62.0 20.5 135 482-661 662-800 (814)
217 3ly7_A Transcriptional activat 96.9 0.027 9.1E-07 54.7 15.8 73 505-581 275-347 (372)
218 3qwp_A SET and MYND domain-con 96.9 0.0062 2.1E-07 61.8 11.8 97 509-605 289-399 (429)
219 1pc2_A Mitochondria fission pr 96.9 0.0024 8.4E-08 53.1 7.1 80 593-672 14-99 (152)
220 2v5f_A Prolyl 4-hydroxylase su 96.8 0.012 3.9E-07 46.2 10.4 74 577-651 5-87 (104)
221 3mkq_A Coatomer beta'-subunit; 96.7 0.057 2E-06 60.2 19.7 45 448-498 663-707 (814)
222 3ly7_A Transcriptional activat 96.7 0.028 9.4E-07 54.6 14.1 65 330-396 275-339 (372)
223 4ady_A RPN2, 26S proteasome re 96.6 1.2 3.9E-05 49.1 37.3 263 341-610 383-662 (963)
224 3u64_A Protein TP_0956; tetrat 96.6 0.077 2.6E-06 49.3 15.3 149 511-670 115-295 (301)
225 3bee_A Putative YFRE protein; 96.5 0.019 6.6E-07 43.7 9.5 63 541-605 5-71 (93)
226 3u64_A Protein TP_0956; tetrat 96.5 0.026 9E-07 52.4 12.0 79 523-605 179-268 (301)
227 4ady_A RPN2, 26S proteasome re 96.3 1.7 5.8E-05 47.8 37.9 249 379-637 386-657 (963)
228 2v5f_A Prolyl 4-hydroxylase su 96.3 0.017 5.9E-07 45.1 8.3 64 609-672 5-74 (104)
229 1nzn_A CGI-135 protein, fissio 96.1 0.025 8.4E-07 45.2 8.1 96 549-646 8-110 (126)
230 1nzn_A CGI-135 protein, fissio 96.1 0.057 1.9E-06 43.1 10.1 89 515-605 9-102 (126)
231 1wy6_A Hypothetical protein ST 95.8 0.56 1.9E-05 37.5 14.6 56 616-672 98-153 (172)
232 4h7y_A Dual specificity protei 95.5 0.32 1.1E-05 39.8 12.5 110 541-652 12-136 (161)
233 3mkq_B Coatomer subunit alpha; 95.5 0.97 3.3E-05 38.6 16.0 101 305-427 14-114 (177)
234 3mkq_B Coatomer subunit alpha; 95.5 1.1 3.6E-05 38.3 17.1 98 413-531 16-113 (177)
235 1wy6_A Hypothetical protein ST 95.4 0.84 2.9E-05 36.5 15.2 136 275-433 21-156 (172)
236 3lvg_A Clathrin heavy chain 1; 95.2 5E-05 1.7E-09 74.8 -12.5 121 330-457 197-324 (624)
237 1y8m_A FIS1; mitochondria, unk 94.4 0.18 6.2E-06 41.0 8.1 73 572-645 34-112 (144)
238 4b4t_P 26S proteasome regulato 94.3 5.1 0.00018 40.5 21.3 94 371-464 141-245 (445)
239 4gns_B Protein CSD3, chitin bi 94.3 0.51 1.8E-05 50.8 13.9 52 617-669 345-396 (754)
240 3o48_A Mitochondria fission 1 93.8 0.2 6.7E-06 40.2 7.2 73 572-645 35-113 (134)
241 4h7y_A Dual specificity protei 93.8 0.54 1.8E-05 38.6 9.8 51 486-537 74-124 (161)
242 3lpz_A GET4 (YOR164C homolog); 93.4 5.6 0.00019 37.9 20.0 166 137-324 39-215 (336)
243 4fhn_B Nucleoporin NUP120; pro 92.0 1.3 4.4E-05 51.2 13.8 162 102-271 817-984 (1139)
244 2wpv_A GET4, UPF0363 protein Y 91.8 8.8 0.0003 36.3 20.9 170 136-324 36-216 (312)
245 1v54_E Cytochrome C oxidase po 91.7 0.54 1.8E-05 35.3 6.4 52 624-675 25-76 (109)
246 1y8m_A FIS1; mitochondria, unk 91.5 3.1 0.00011 33.8 11.4 72 255-326 36-107 (144)
247 2wpv_A GET4, UPF0363 protein Y 91.5 9.5 0.00032 36.1 19.7 113 474-601 35-158 (312)
248 3o48_A Mitochondria fission 1 91.5 1.5 5.1E-05 35.1 9.3 72 254-325 36-107 (134)
249 4b4t_P 26S proteasome regulato 90.4 16 0.00055 36.8 21.4 189 310-500 30-246 (445)
250 2ff4_A Probable regulatory pro 90.3 3.8 0.00013 40.6 13.6 70 155-225 173-247 (388)
251 3lpz_A GET4 (YOR164C homolog); 90.3 13 0.00044 35.4 22.8 26 435-460 134-159 (336)
252 4gns_B Protein CSD3, chitin bi 90.1 2.1 7.1E-05 46.1 12.0 25 442-466 253-278 (754)
253 3ffl_A Anaphase-promoting comp 89.5 1.9 6.7E-05 36.1 8.8 28 578-605 123-150 (167)
254 2ff4_A Probable regulatory pro 88.1 1.2 3.9E-05 44.4 7.9 76 579-654 173-255 (388)
255 4fhn_B Nucleoporin NUP120; pro 88.1 11 0.00038 43.4 17.2 144 443-593 818-987 (1139)
256 2y69_E Cytochrome C oxidase su 87.2 1.6 5.6E-05 34.7 6.4 51 625-675 69-119 (152)
257 3lvg_A Clathrin heavy chain 1; 87.1 4E-05 1.4E-09 75.5 -24.0 239 404-669 56-316 (624)
258 3ffl_A Anaphase-promoting comp 86.1 5.4 0.00019 33.4 9.4 122 536-670 12-148 (167)
259 1v54_E Cytochrome C oxidase po 82.2 11 0.00038 28.4 8.5 41 528-568 31-71 (109)
260 1zbp_A Hypothetical protein VP 80.6 4.7 0.00016 36.9 7.5 56 586-641 6-63 (273)
261 1qsa_A Protein (soluble lytic 78.2 72 0.0025 33.6 37.5 202 451-668 228-437 (618)
262 1qsa_A Protein (soluble lytic 76.3 81 0.0028 33.2 32.1 118 310-430 228-347 (618)
263 2y69_E Cytochrome C oxidase su 76.1 18 0.00063 28.9 8.5 42 492-533 73-114 (152)
264 4b4t_R RPN7, 26S proteasome re 73.7 45 0.0015 33.3 13.5 63 189-251 132-196 (429)
265 1zbp_A Hypothetical protein VP 72.5 31 0.0011 31.6 10.5 114 446-570 6-128 (273)
266 4b4t_R RPN7, 26S proteasome re 71.9 50 0.0017 33.0 13.3 96 335-430 134-236 (429)
267 2uwj_G Type III export protein 71.1 30 0.001 25.9 8.1 79 275-362 20-98 (115)
268 2p58_C Putative type III secre 70.6 31 0.0011 25.9 8.6 78 275-361 21-98 (116)
269 4a1g_A Mitotic checkpoint seri 69.1 47 0.0016 27.3 11.3 50 242-294 84-134 (152)
270 3esl_A Checkpoint serine/threo 67.3 45 0.0015 28.9 10.0 55 381-435 93-148 (202)
271 3eiq_C Programmed cell death p 65.5 53 0.0018 31.6 11.2 25 370-394 57-81 (358)
272 3ltm_A Alpha-REP4; protein eng 64.5 71 0.0024 27.7 17.3 18 540-557 124-141 (211)
273 3ltm_A Alpha-REP4; protein eng 64.0 72 0.0025 27.6 18.3 173 470-659 31-203 (211)
274 3esl_A Checkpoint serine/threo 63.4 62 0.0021 28.1 10.0 53 523-575 95-148 (202)
275 2ijq_A Hypothetical protein; s 62.1 23 0.00077 29.6 6.9 56 619-674 42-105 (161)
276 2uwj_G Type III export protein 60.0 51 0.0018 24.7 7.5 50 481-536 48-97 (115)
277 2p58_C Putative type III secre 60.0 53 0.0018 24.7 8.4 50 481-536 49-98 (116)
278 3ltj_A Alpharep-4; protein eng 56.4 95 0.0032 26.5 18.9 122 505-636 57-178 (201)
279 2zu6_B Programmed cell death p 56.3 55 0.0019 30.8 9.4 25 405-429 6-30 (307)
280 3txn_A 26S proteasome regulato 53.1 1.7E+02 0.0059 28.6 29.0 222 407-639 104-344 (394)
281 3txn_A 26S proteasome regulato 47.4 2.1E+02 0.0073 27.9 26.8 241 298-543 21-290 (394)
282 2d2s_A Exocyst complex compone 46.8 87 0.003 28.1 8.8 89 513-604 24-118 (235)
283 2wvi_A Mitotic checkpoint seri 45.5 55 0.0019 27.3 6.6 51 526-576 79-130 (164)
284 4fke_A Aminopeptidase N; zinc 44.2 3.6E+02 0.012 29.9 15.1 22 372-393 763-784 (909)
285 2wvi_A Mitotic checkpoint seri 44.0 1.4E+02 0.0048 24.9 9.3 50 386-435 79-129 (164)
286 1bpo_A Protein (clathrin); cla 43.9 81 0.0028 31.4 8.5 99 143-243 351-449 (494)
287 4a1g_A Mitotic checkpoint seri 42.4 1.4E+02 0.0048 24.5 10.3 53 205-257 82-135 (152)
288 3eiq_C Programmed cell death p 42.1 2.4E+02 0.0083 27.1 12.7 31 150-180 51-81 (358)
289 3kae_A CDC27, possible protein 42.0 95 0.0033 26.0 7.2 52 618-669 71-139 (242)
290 3ltj_A Alpharep-4; protein eng 41.8 1.6E+02 0.0055 25.0 17.8 125 471-608 58-182 (201)
291 1wdy_A 2-5A-dependent ribonucl 38.0 75 0.0026 28.9 7.5 48 554-601 191-240 (285)
292 2d2s_A Exocyst complex compone 37.8 2.2E+02 0.0075 25.4 9.9 30 400-429 89-118 (235)
293 2ion_A PDCD4, programmed cell 36.7 1.6E+02 0.0056 24.1 8.2 26 544-569 11-36 (152)
294 1wdy_A 2-5A-dependent ribonucl 35.4 84 0.0029 28.5 7.3 8 483-490 227-234 (285)
295 2nsz_A Programmed cell death p 35.1 1.7E+02 0.0057 23.2 9.6 25 545-569 10-34 (129)
296 4b4t_S RPN3, 26S proteasome re 34.6 74 0.0025 32.4 6.8 60 579-638 233-299 (523)
297 2fe3_A Peroxide operon regulat 34.5 1.3E+02 0.0045 24.3 7.4 61 532-593 12-72 (145)
298 1oyz_A Hypothetical protein YI 34.3 2.6E+02 0.009 25.2 23.7 227 399-645 34-270 (280)
299 4aez_C MAD3, mitotic spindle c 33.9 76 0.0026 28.0 6.0 51 525-575 132-183 (223)
300 3bu8_A Telomeric repeat-bindin 33.1 1.8E+02 0.0061 25.4 7.8 18 587-604 124-141 (235)
301 2qx5_A Nucleoporin NIC96; mRNA 32.6 4.7E+02 0.016 27.6 21.6 24 299-322 155-178 (661)
302 3eu9_A Huntingtin-interacting 32.2 49 0.0017 29.2 5.0 17 195-211 46-62 (240)
303 2ion_A PDCD4, programmed cell 32.2 2.1E+02 0.0071 23.4 8.6 22 372-393 14-35 (152)
304 4gq2_M Nucleoporin NUP120; bet 32.0 2.1E+02 0.0073 32.0 10.8 29 611-639 899-927 (950)
305 1mzb_A Ferric uptake regulatio 31.4 1.3E+02 0.0046 23.9 6.9 60 533-593 9-69 (136)
306 1bpo_A Protein (clathrin); cla 30.9 4.2E+02 0.014 26.5 11.8 100 501-602 355-454 (494)
307 2xig_A Ferric uptake regulatio 30.6 1.3E+02 0.0046 24.5 6.8 61 532-593 17-77 (150)
308 2cwy_A Hypothetical protein TT 30.4 54 0.0018 24.4 3.9 17 587-603 11-27 (94)
309 3eyy_A Putative iron uptake re 30.3 1.1E+02 0.0039 24.7 6.3 60 532-593 9-68 (145)
310 4aez_C MAD3, mitotic spindle c 29.9 2.9E+02 0.0099 24.4 10.8 51 241-294 132-183 (223)
311 2zu6_B Programmed cell death p 29.3 3.6E+02 0.012 25.2 10.5 24 261-287 6-29 (307)
312 4ets_A Ferric uptake regulatio 28.8 1.1E+02 0.0039 25.3 6.2 67 314-381 15-83 (162)
313 2qx5_A Nucleoporin NIC96; mRNA 28.4 5.5E+02 0.019 27.1 14.4 21 483-506 549-569 (661)
314 2w57_A Ferric uptake regulatio 27.9 1.4E+02 0.0048 24.3 6.5 61 532-593 7-68 (150)
315 3l6a_A Eukaryotic translation 27.5 2.7E+02 0.0094 26.8 9.4 25 298-322 14-38 (364)
316 2nsz_A Programmed cell death p 27.2 2.3E+02 0.0079 22.3 10.0 21 408-428 13-33 (129)
317 1k1a_A B-cell lymphoma 3-encod 27.1 1.2E+02 0.004 26.7 6.6 25 340-364 14-38 (241)
318 2fu4_A Ferric uptake regulatio 26.7 1.7E+02 0.0057 20.6 6.4 61 532-593 7-68 (83)
319 3rjo_A Endoplasmic reticulum a 24.8 5E+02 0.017 25.4 22.0 31 331-361 266-296 (419)
320 4b4t_S RPN3, 26S proteasome re 24.7 1.9E+02 0.0066 29.4 7.9 117 542-670 231-367 (523)
321 2r9g_A AAA ATPase, central reg 24.4 3.4E+02 0.012 23.4 10.5 55 344-399 26-85 (204)
322 2keb_A DNA polymerase subunit 23.5 2.3E+02 0.0079 21.1 6.8 56 525-582 27-87 (101)
323 2crb_A Nuclear receptor bindin 23.2 1E+02 0.0035 22.6 3.9 24 612-635 18-41 (97)
324 3bge_A Predicted ATPase; struc 23.2 3.6E+02 0.012 23.2 8.4 96 229-324 10-110 (201)
325 2f6m_A Suppressor protein STP2 22.7 1.1E+02 0.0039 20.8 3.9 44 156-200 5-48 (65)
326 3t8k_A Uncharacterized protein 22.3 1.7E+02 0.0057 24.8 6.3 65 230-296 42-109 (186)
327 4ets_A Ferric uptake regulatio 22.3 2.1E+02 0.0073 23.6 6.6 69 524-593 14-85 (162)
328 4gq2_M Nucleoporin NUP120; bet 22.3 1.4E+02 0.0048 33.4 7.1 49 103-157 816-864 (950)
329 1k1a_A B-cell lymphoma 3-encod 21.9 1.7E+02 0.0057 25.6 6.6 16 379-394 18-33 (241)
330 3t8k_A Uncharacterized protein 21.8 2.2E+02 0.0076 24.0 7.0 65 337-401 40-108 (186)
331 3bu8_A Telomeric repeat-bindin 21.1 4.1E+02 0.014 23.2 7.9 23 549-571 121-143 (235)
332 2fe3_A Peroxide operon regulat 20.9 3.3E+02 0.011 21.9 7.9 41 409-449 28-68 (145)
333 1ya0_A SMG-7 transcript varian 20.5 1.9E+02 0.0065 29.3 7.0 77 579-656 154-232 (497)
334 1ug3_A EIF4GI, eukaryotic prot 20.1 5.5E+02 0.019 24.2 11.2 21 229-249 17-37 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-40 Score=361.55 Aligned_cols=485 Identities=13% Similarity=0.047 Sum_probs=378.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 044815 154 EVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAY 233 (675)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 233 (675)
..+..++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHH
Confidence 45677888888899999999999998864 478889999999999999999999999998654 67999999999999
Q ss_pred HHcCCHHHHHHHHHHHhHC---------------CCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhh
Q 044815 234 CRMGRVTEADRWLSAMLDR---------------GAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYT 298 (675)
Q Consensus 234 ~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 298 (675)
.+.|++++|.++|+++... +...+..+|..++.++.+. |++++|++.|++|.+.+.. +...
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL---SNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCch-hhHH
Confidence 9999999999999953222 1233467888888888886 6888888888888776422 4455
Q ss_pred HHHHHHHHHhcCCHHHHHHH---HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 299 HTVLIDGLCKKGWTEKAFRL---FLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 299 ~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
+..+...+...+..+.+... +..+.. .+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSK-EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHG-GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCccccc-chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55555544433322222111 223222 222334455666777888888888888888888764 578888888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQ 455 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 455 (675)
+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+. .+.+..+|+.++..|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888888765 446777888888888888888888888888765 34567788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 456 ALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 456 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888753 44677888888888888888888888888887653 4677888888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK----GISPC--EVTRVTLAYEYCKQGDSATAMIILESLDK--KL 607 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 607 (675)
.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.+.++++.+ +.
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 53 346778888888888888888888888888764 55676 56778888888888888888888888654 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 608 WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
+..+|..++.+|.+.|++++|.++|+++++.+|. +...+..++.+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 6778888888888888888888888888888887 7888887777654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-40 Score=360.23 Aligned_cols=471 Identities=12% Similarity=0.016 Sum_probs=406.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHH
Q 044815 186 LITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLI 265 (675)
Q Consensus 186 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 265 (675)
++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57788999999999999999999999999864 578899999999999999999999999998653 56889999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 044815 266 TAFCDKGFRGSIKQAFELLEEMVRK---------------GWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKP 330 (675)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 330 (675)
..+.+. |++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+.. +.
T Consensus 158 ~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~ 232 (597)
T 2xpi_A 158 FCLVKL---YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AK 232 (597)
T ss_dssp HHHHHT---TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHH---hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ch
Confidence 999998 7999999999953221 223468899999999999999999999999998754 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHH--HH-HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 044815 331 NVHTYTAMISGYCKEEKMNRAE--ML-LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNA 407 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~--~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 407 (675)
+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 4556666665544333322221 12 555555555556677888899999999999999999999876 589999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK 487 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 487 (675)
++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875 3478889999999999999999999999999764 5678999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
+++|.++|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998643 468899999999999999999999999999864 44788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCC--hhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 568 MIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-------KLW--IRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 568 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
+.+... .+..++..++..|.+.|++++|.++|+++.. .|+ ..+|..++.+|.+.|++++|++.++++++.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 998432 2578889999999999999999999999754 343 678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 639 DQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 639 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+|. +..+|..++.+|.+.|++++|.+.++++++.
T Consensus 546 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 546 STN-DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 987 8999999999999999999999999999863
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.3e-27 Score=244.03 Aligned_cols=374 Identities=14% Similarity=0.101 Sum_probs=276.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|++++|.+.++++.+... .+...+..+...+...|++++|...+...++.. +.+..+|..+...+.+.|++++|+..
T Consensus 13 g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 566777766666665432 244555566666677777777777776666543 45566777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ 434 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 434 (675)
|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 77776642 2245567777777777777777777777777653 3345566667777777777777777777777653 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 514 (675)
.+..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++++.+... .+..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHH
Confidence 456677777777888888888888888777764 34567788888888888888888888888877542 3567788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 594 (675)
..|.+.|++++|+..++++.+.+ +.+..+|..++.++.+.|++++|...|+++++.. +.+..++..++..+.+.|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888888743 2246678888888888888888888888888742 234567778888888888999
Q ss_pred HHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 595 TAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 595 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
+|.+.++++.+ +.+..++..++..|.+.|++++|+..|+++++..|. +...|..++.++...|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence 98888888765 345678899999999999999999999999999888 88899999888877664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.4e-27 Score=241.86 Aligned_cols=359 Identities=16% Similarity=0.089 Sum_probs=318.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 302 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 302 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 381 (675)
+...+.+.|++++|.+.+.++.+.. +.+...+..+...+...|++++|...++...+. .+.+..+|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCC
Confidence 4567788999999999999988754 445667778888899999999999999998875 3457889999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998864 4567789999999999999999999999999864 3355677888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP- 540 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 540 (675)
++.+.. +.+..+|..+...+...|++++|...|+++.+.+. .+...|..+...+...|++++|+..+++..+. .|
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 235 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN 235 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC
Confidence 999874 44688999999999999999999999999998753 45778999999999999999999999999884 35
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIR 617 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 617 (675)
+..++..++.++...|++++|...|+++++. .|+ ..++..++..|.+.|++++|.+.++++.+ +.+..+|..++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 4788999999999999999999999999994 453 56788899999999999999999999866 457788999999
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+.+.|++++|+..++++++..|. +..++..++.++.+.|++++|.+.++++++
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999887 899999999999999999999999999886
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3e-29 Score=262.15 Aligned_cols=184 Identities=14% Similarity=0.250 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 044815 370 YTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGR---------VQEAYELLKKAFQRELQADKITY 440 (675)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 440 (675)
++.+|++|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 333444444444444444444444444444444444444444433322 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 044815 441 TILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD 520 (675)
Q Consensus 441 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 520 (675)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044815 521 GNISSAVKYFQRMNQIGCAPDNITYGALISGLC 553 (675)
Q Consensus 521 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 553 (675)
|+.++|.+++++|.+.|..|+..||+.++..|+
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555555555555555555444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.5e-29 Score=261.64 Aligned_cols=204 Identities=18% Similarity=0.246 Sum_probs=125.0
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---------hH
Q 044815 280 AFELLEEMVRKGWKPNV-YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK---------MN 349 (675)
Q Consensus 280 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~ 349 (675)
+..+.+++.+++..+.. ..++.+|++|++.|++++|+++|++|.+ .|+.||..+||.||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544332 3456666667777777777777666644 4566677777777666665443 45
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 350 RAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 350 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 430 QRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 430 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
+.|+.||..||+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-24 Score=231.99 Aligned_cols=449 Identities=12% Similarity=0.013 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 044815 188 TSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITA 267 (675)
Q Consensus 188 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 267 (675)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++++.+.+. .+...+..+...
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4566777788888888888888888888764 6888888888888888888888888888887642 255677777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 044815 268 FCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK 347 (675)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 347 (675)
+... |++++|...|+++.+.+. ++......++..+.+......+.+.+..+... +..|+...+............
T Consensus 83 ~~~~---g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 83 NEGL---GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHT---TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------C
T ss_pred HHHH---hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccC
Confidence 7776 678888888888877653 34444444555444444344443333332211 112222222222111122222
Q ss_pred hHHHHHHHHHHHHcCCC--------C-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----cCC--------CCCH
Q 044815 348 MNRAEMLLERMKEQGLL--------P-NTNTYTSLIYGHCK---VGNFERAYDLMDLMGK-----EGC--------TPNI 402 (675)
Q Consensus 348 ~~~A~~~~~~m~~~g~~--------p-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~ 402 (675)
......+...+...... | +...+......+.. .|++++|...++++.+ ..- +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 22222222222221111 1 14444444444443 7888888888888877 211 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF 482 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 482 (675)
.++..+...+...|++++|...++++.+..+. ...+..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 56777788888888888888888888876543 7778888888888888888888888887764 44567788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 483 CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEAC 562 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 562 (675)
...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888887643 356677888888888888888888888887642 234567777888888888888888
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 563 QFYESMIGKGIS-PC----EVTRVTLAYEYCK---QGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 563 ~~~~~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
..++++.+.... ++ ...+..++..|.+ .|++++|...++++.. +.+...+..++..+.+.|++++|...|
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888763111 11 2367778888888 8888888888888654 345667788888888888888888888
Q ss_pred HHHhcCCCCCCHHHHHHH
Q 044815 633 HKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 633 ~~~~~~~~~p~~~~~~~l 650 (675)
+++++.+|. +...+..+
T Consensus 473 ~~a~~~~~~-~~~~~~~~ 489 (514)
T 2gw1_A 473 EESADLART-MEEKLQAI 489 (514)
T ss_dssp HHHHHHCSS-HHHHHHHH
T ss_pred HHHHHhccc-cHHHHHHH
Confidence 888888876 55555544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-24 Score=229.56 Aligned_cols=438 Identities=12% Similarity=0.024 Sum_probs=323.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA 232 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 232 (675)
.+.+......+.+.|++++|+..|+++...+ |+..++..+..++.+.|++++|+..|+++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455567778999999999999999999876 689999999999999999999999999998864 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 044815 233 YCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWT 312 (675)
Q Consensus 233 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 312 (675)
+.+.|++++|...|+++...+. ++......++..+... .....+.+.+..+...+..|+......-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNK---QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH---HHHHHHTTC---------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999988763 3444444455444443 23344444444444333333333322222112222222
Q ss_pred HHHHHHHHHHHhcCCCCC---------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCC--------CCH
Q 044815 313 EKAFRLFLKLVRSDNYKP---------NVHTYTAMISGYCK---EEKMNRAEMLLERMKE-----QGLL--------PNT 367 (675)
Q Consensus 313 ~~A~~~~~~~~~~~~~~~---------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~g~~--------p~~ 367 (675)
.....+.. ........+ +...+......+.. .|++++|+..|+++.+ .... .+.
T Consensus 159 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 159 PSVTSMAS-FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCHHHHHH-HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred chhHHHHH-HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 22222211 112221111 14455555555554 8999999999999988 3112 235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 577888889999999999999999998875 338888999999999999999999999998764 44677889999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 044815 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAV 527 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 527 (675)
...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999874 44677888999999999999999999999988643 35778899999999999999999
Q ss_pred HHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 044815 528 KYFQRMNQIGC-APD----NITYGALISGLCK---QSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 528 ~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
..++++.+... .++ ...+..+...+.. .|++++|...++++++. .| +...+..++..|.+.|++++|..
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999876421 111 3378889999999 99999999999999884 34 35677889999999999999999
Q ss_pred HHHHHhh
Q 044815 599 ILESLDK 605 (675)
Q Consensus 599 ~~~~~~~ 605 (675)
.++++..
T Consensus 471 ~~~~a~~ 477 (514)
T 2gw1_A 471 LFEESAD 477 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999766
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.6e-23 Score=216.43 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=231.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+...+..++..+.+.|++++|+.+|+++++.. +.+..+|..+..++...|++++|+..|+++.+.+. .+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 45556666666666666666666666665432 33455666666666666666666666666665432 2455556666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNI---YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
..|.+.|++++|.+.|+++.+.. +.+. ..+..++..+... .+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 66666666666666666665542 1222 3344443331111 1122344566778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
++++|+..++++.+.. +.+...+..++.++.+.|++++|.++|+++.+... .+..+|..++..|...|++++|+..++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888877753 44677788888888888888888888888876532 457778888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPD-NITYGAL------------ISGLCKQSKLDEACQFYESMIGKGISPC-----EVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~ 593 (675)
++.+. .|+ ...+..+ +..+.+.|++++|...|+++++ +.|+ ...+..++..+.+.|++
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 88764 343 3444433 7788888999999999999887 4454 23567788888899999
Q ss_pred HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------HHhcC-
Q 044815 594 ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA------------CYESN- 658 (675)
Q Consensus 594 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g- 658 (675)
++|...++++.. +.+...|..++.+|...|++++|...|+++++..|. +...+..++.+ |...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999988654 346778888999999999999999999999998888 78888887743 44444
Q ss_pred ----chhHHHHHHHH
Q 044815 659 ----KYALFSDLSQR 669 (675)
Q Consensus 659 ----~~~~A~~~~~~ 669 (675)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 55666777765
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.2e-23 Score=215.39 Aligned_cols=389 Identities=12% Similarity=0.074 Sum_probs=270.2
Q ss_pred HHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 044815 240 TEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLF 319 (675)
Q Consensus 240 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 319 (675)
..+...+.+..... ..+...+..+...+.+. |++++|+..|+++.+.. +.+..++..++.+|...|++++|.+.|
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAA---GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455555555442 23566788888888887 79999999999998864 347889999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H---HHHHHHHHH------------HHhcCCH
Q 044815 320 LKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN-T---NTYTSLIYG------------HCKVGNF 383 (675)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~------------~~~~g~~ 383 (675)
+++++.. +.+...+..+...|.+.|++++|...|+++.+. .|+ . ..+..++.. +...|++
T Consensus 84 ~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 84 TKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9998764 456889999999999999999999999999985 344 4 666666444 7788888
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRM 463 (675)
Q Consensus 384 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 463 (675)
++|...++++.+.. +.+..++..++.+|.+.|++++|.+.|+++.+.. +.+..++..++..+...|++++|+..++++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89988888888764 5577888888888888888888888888887653 456778888888888888888888888888
Q ss_pred HHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHHcCCHHHH
Q 044815 464 VKAGLNPDIHAYTTL------------IAAFCRQKKMKESEKFFQEAITAGLFPT-----KETYTSMICGYLRDGNISSA 526 (675)
Q Consensus 464 ~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A 526 (675)
.+.. +.+...+..+ +..+.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 8753 3344445444 667777777777777777777643 33 33566677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+..++++.+.. +.+..+|..++.+|...|++++|...++++++ +.|+. ..+..+..+....++ ...
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~----------~~~ 381 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQ----------SQK 381 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHH----------HHS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhc----------ccc
Confidence 77777776642 22466777777777777777777777777777 44543 333333322211111 000
Q ss_pred CCChhhHHHHHHHHHccC-----CHHHHHHHHHH-HhcCCCC--CCH-------HHHHHHHHHHHhcCchhHHHH
Q 044815 606 KLWIRTVNTLIRKLCSEK-----RVGMAALFFHK-LLGKDQN--VDR-------VSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~-~~~~~~~--p~~-------~~~~~l~~~~~~~g~~~~A~~ 665 (675)
. ..|...| +.+++.+.|++ +++..|+ |+. ..+..+..+|...++.+++..
T Consensus 382 ~----------~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 382 R----------DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp C----------CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred h----------hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 0 1122222 56777888876 5665553 332 367788888888888776544
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1e-22 Score=218.98 Aligned_cols=437 Identities=11% Similarity=0.048 Sum_probs=318.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 044815 187 ITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLIT 266 (675)
Q Consensus 187 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 266 (675)
....+..+...+.+.|++++|+..|+++.+.. +.++.+|..+..++.+.|++++|.+.++++.+.+. .+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 35678888899999999999999999998864 45788999999999999999999999999988653 25677777778
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHH
Q 044815 267 AFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD-----NYKPNVHTYTAMISG 341 (675)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~li~~ 341 (675)
.+... |++++|+..|+. ... .|+. ....+..+...+...+|...+++++... ...|+ ...+..
T Consensus 102 ~~~~~---g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----~~~~~~ 169 (537)
T 3fp2_A 102 ANESL---GNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----NTSLAS 169 (537)
T ss_dssp HHHHH---TCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC----HHHHHH
T ss_pred HHHHc---CCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch----HhHHHH
Confidence 88776 789999999963 332 2222 2233445666677788888888875531 12233 333444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCCC-------HHHH
Q 044815 342 YCKEEKMNRAEMLLERMKEQGLLPNTN-TYTSLIYGHCKV--------GNFERAYDLMDLMGKEGCTPN-------IYAY 405 (675)
Q Consensus 342 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~-------~~~~ 405 (675)
+....+.+.+...+..... ..+... ....+...+... |++++|..+++++.+.. +.+ ..++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALAL 246 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHH
Confidence 5566676666655544332 223322 223333332222 47888999999888764 223 2346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
..+...+...|++++|...++++.+.. |+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhc
Confidence 677788888999999999999998864 447788888889999999999999999988864 44678888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFY 565 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 565 (675)
|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 324 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999988653 356788889999999999999999999988753 334668888888999999999999999
Q ss_pred HHHHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHH
Q 044815 566 ESMIGKG-----ISPCEVTRVTLAYEYCKQ----------GDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 566 ~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 628 (675)
+++++.. .......+..++..|.+. |++++|...++++.. +.+...+..++..|.+.|++++|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 9987632 111123345566778887 999999999998765 34677888899999999999999
Q ss_pred HHHHHHHhcCCCCCCHHH
Q 044815 629 ALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 629 ~~~~~~~~~~~~~p~~~~ 646 (675)
.+.|+++++..|. +...
T Consensus 482 ~~~~~~al~~~~~-~~~~ 498 (537)
T 3fp2_A 482 IELFEDSAILART-MDEK 498 (537)
T ss_dssp HHHHHHHHHHC---CHHH
T ss_pred HHHHHHHHHhCCC-cHHH
Confidence 9999999998886 4433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.9e-22 Score=214.41 Aligned_cols=432 Identities=16% Similarity=0.077 Sum_probs=329.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044815 153 HEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVA 232 (675)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 232 (675)
.+.+......+.+.|++++|+..|+++.+.. |.+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4556677889999999999999999999876 6788999999999999999999999999999874 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcC
Q 044815 233 YCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKG--WKPNVYTHTVLIDGLCKKG 310 (675)
Q Consensus 233 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 310 (675)
+...|++++|...|+.+.. .|+.. ...+..+... +...+|...++++.... ..+........+..+....
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~---~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLER---NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHH---HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHH---HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 9999999999999974432 22222 1122233332 45678888888886541 1112223344566677778
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCH-------HHHHHHH
Q 044815 311 WTEKAFRLFLKLVRSDNYKPNVHTYT-AMISGYCKE--------EKMNRAEMLLERMKEQGLLPNT-------NTYTSLI 374 (675)
Q Consensus 311 ~~~~A~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li 374 (675)
+.+.+...+.+.. ...+....+. .+...+... |++++|..+++++.+.... +. .++..+.
T Consensus 175 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 175 DSHLEVSSVNTSS---NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp CHHHHHHTSCCCC---SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcc---ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 8877766554332 2233333333 333332222 4789999999999875322 22 3566777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
..+...|++++|...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 8888999999999999999987 4668889999999999999999999999998864 456788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
+|+..++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 44577899999999999999999999999998753 457789999999999999999999999987
Q ss_pred HCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 044815 535 QIGC-----APDNITYGALISGLCKQ----------SKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 535 ~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
+... ......+......+... |++++|...|+++++. .| +...+..++..|.+.|++++|.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 6421 11222345556777787 9999999999999984 34 35677889999999999999999
Q ss_pred HHHHHhh
Q 044815 599 ILESLDK 605 (675)
Q Consensus 599 ~~~~~~~ 605 (675)
.|+++.+
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999766
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=7.1e-20 Score=185.49 Aligned_cols=330 Identities=14% Similarity=0.089 Sum_probs=231.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
++..+..+...+.+.|++++|...|.++++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 34556667777777777777777777776643 3456667777777777777777777777776642 22456666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCT---PNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQA 451 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 451 (675)
..+...|++++|...++++.+.. + .+...+..+...+. ...+..+...+...|
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 77777777777777777766652 1 12233332221100 011222355677777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 452 ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 452 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888777777664 44667777777788888888888888888777542 466777778888888888888888888
Q ss_pred HHHHCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPD-NITYG------------ALISGLCKQSKLDEACQFYESMIGKGISPCE-----VTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~ 593 (675)
+..+.. |+ ...+. .+...+.+.|++++|...++++.+. .|+. ..+..++..|.+.|++
T Consensus 213 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 877642 33 33322 2366688999999999999999884 3443 2244578899999999
Q ss_pred HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 594 ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 594 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
++|...++++.. +.+...|..++..+.+.|++++|...|+++++.+|. +...+..+..+....+
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHH
Confidence 999999999765 346788999999999999999999999999999998 8888887777655443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=2.6e-18 Score=181.89 Aligned_cols=353 Identities=13% Similarity=0.105 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cC
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCK----KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK----EE 346 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 346 (675)
+++++|+..|++..+.| +...+..|...|.. .++.++|.+.|.+..+. .+...+..+...|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 34444444444444432 33444444444444 45555555555554432 233444444444444 45
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCH
Q 044815 347 KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK----KGRV 418 (675)
Q Consensus 347 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 418 (675)
++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 5555555555555432 34444445555544 455666666666555543 45555555555555 5566
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 044815 419 QEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKE 490 (675)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 490 (675)
++|.+.|++..+.+ +...+..+...+.. .++.++|...|++..+.+ +...+..+...+.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 66666666655542 34445555555554 556666666666665543 34455555555655 667777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 044815 491 SEKFFQEAITAGLFPTKETYTSMICGYLRD-----GNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS---KLDEAC 562 (675)
Q Consensus 491 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 562 (675)
|..+|++..+.+ +...+..+...|... +++++|+..+++..+.| +...+..+...|...| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 777777766543 445566666666665 67777777777777643 4455666666666655 677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 044815 563 QFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHK 634 (675)
Q Consensus 563 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 634 (675)
+.|++..+.| +...+..++..|.. .++.++|.+.|++.....+...+..++..|.+ .+++++|...|++
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7777777753 35566777777777 67777777777777766667777777777776 6778888888888
Q ss_pred HhcCCCC-C-CHHHHHHHHHHHH
Q 044815 635 LLGKDQN-V-DRVSLAALKNACY 655 (675)
Q Consensus 635 ~~~~~~~-p-~~~~~~~l~~~~~ 655 (675)
+.+.+++ | +......++..+.
T Consensus 429 A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 429 ASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHCCCCCcCCHHHHHHHHhcCH
Confidence 7777743 1 3444445544433
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=6.5e-18 Score=178.86 Aligned_cols=363 Identities=12% Similarity=0.074 Sum_probs=313.9
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 044815 280 AFELLEEMVRKGWKPNVYTHTVLIDGLCK----KGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCK----EEKMNRA 351 (675)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A 351 (675)
++..+....+. .+...+..+...|.. .+++++|++.|.+..+. .+...+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 34555555554 377888888888888 89999999999998774 467788889999988 8999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 044815 352 EMLLERMKEQGLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCK----KGRVQEAYE 423 (675)
Q Consensus 352 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 423 (675)
...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998864 67778888888888 789999999999999876 67888889999988 889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 044815 424 LLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKESEKFF 495 (675)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 495 (675)
.|++..+.+ +...+..+...|.. .++.++|+..|++..+.+ +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67888888888888 899999999999999865 66788888888886 88999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 044815 496 QEAITAGLFPTKETYTSMICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ-----SKLDEACQFYE 566 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 566 (675)
++..+.+ +...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|...|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9999864 56777788888888 899999999999998754 566777788888887 89999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCC
Q 044815 567 SMIGKGISPCEVTRVTLAYEYCKQG---DSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 567 ~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 639 (675)
+..+.| +...+..++..|...| +.++|.++|++.....+...+..++..|.. .+++++|+.+|+++.+.+
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 999965 3567888999998877 789999999999888889999999999998 899999999999999976
Q ss_pred CCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHhc
Q 044815 640 QNVDRVSLAALKNACYE----SNKYALFSDLSQRIAEG 673 (675)
Q Consensus 640 ~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 673 (675)
+...+..|+.+|.. .+++++|.++++++++.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 57889999999998 89999999999999863
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.8e-19 Score=182.52 Aligned_cols=312 Identities=11% Similarity=0.034 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 044815 332 VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDG 411 (675)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 411 (675)
...+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45566667777777777777777777766422 256667777777777777777777777776653 3356666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 412 LCKKGRVQEAYELLKKAFQRELQ--ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 412 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (675)
+...|++++|...++++.+..+. .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 77777777777777777654210 12222222221110 112334567888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMI 569 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (675)
+|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998753 577889999999999999999999999998853 4467889999999999999999999999999
Q ss_pred hCCCCCCHHH-HH------------HHHHHHHHcCCHHHHHHHHHHHhh-CC-Ch----hhHHHHHHHHHccCCHHHHHH
Q 044815 570 GKGISPCEVT-RV------------TLAYEYCKQGDSATAMIILESLDK-KL-WI----RTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 570 ~~g~~p~~~~-~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~----~~~~~l~~~~~~~g~~~~A~~ 630 (675)
+. .|+... +. .++..+.+.|++++|...++++.. .| +. ..+..++..+.+.|++++|+.
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 83 444322 21 337779999999999999999765 33 22 235568889999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 631 FFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.++++++.+|. +..++..++.++...|++++|.+.++++++.
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999887 8999999999999999999999999999863
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.4e-19 Score=178.30 Aligned_cols=291 Identities=13% Similarity=0.069 Sum_probs=217.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 365 PNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILL 444 (675)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 444 (675)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344455566666667777777777777776653 3344555566677777777777777777777653 34556677777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 044815 445 SEHLKQA-ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 445 ~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 523 (675)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777777653 33566777788888888888888888888877643 2456677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHH
Q 044815 524 SSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG--------ISPCEVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~~ 595 (675)
++|...++++.+.. +.+...+..+...+...|++++|...++++++.. .......+..++..|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888887743 3356778888888888899999999888887631 12234677888999999999999
Q ss_pred HHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCchh
Q 044815 596 AMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC-YESNKYA 661 (675)
Q Consensus 596 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 661 (675)
|...++++.+ +.+...|..++..+.+.|++++|...++++++..|. +...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 9999998765 346778899999999999999999999999999988 889999999988 5666644
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=3.5e-16 Score=172.68 Aligned_cols=407 Identities=12% Similarity=0.114 Sum_probs=305.3
Q ss_pred cCCCChHHHHHHHHHHhhhcChhHHHHHHHHhhhCCC-CcchhhhHHHHHHHHHhC--CChhHHHHH-----HHHHHHHH
Q 044815 92 IDSLTHEQAITVVASLANEAGSMVALSFFYWAIGFAK-FRHFMRLYIVCATSLISN--GNFERAHEV-----MQCMVSSF 163 (675)
Q Consensus 92 ~~~l~~~~~~~v~~~~~~~~~~~~al~~f~~~~~~~~-~~~~~~~y~~~~~~l~~~--~~~~~a~~~-----~~~li~~~ 163 (675)
|.+..|+.+...++.+...+.+..|++.++.+...+. |+.....-+.++..-.+. ++..+...- ...+...+
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 4578889888889999889999999999999875554 544444444444433333 333332222 22357788
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044815 164 AEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEAD 243 (675)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 243 (675)
...|++++|..+|++.. ......+.++. ..|++++|.++.++.. ++.+|..+..++...|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999963 22222333332 7889999999988662 5788999999999999999999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 244 RWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLV 323 (675)
Q Consensus 244 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 323 (675)
+.|.+. -|...|..++..+.+. |++++|++.|....+.. ++....+.++.+|++.+++++... | +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~l---GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~-f---I 1190 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTS---GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE-F---I 1190 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH-H---H
Confidence 999764 3788888999999987 79999999999887764 344444569999999999986433 3 2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 044815 324 RSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIY 403 (675)
Q Consensus 324 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 403 (675)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..
T Consensus 1191 ~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 2 367778888999999999999999999985 37999999999999999999999886 3678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFC 483 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 483 (675)
+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 999999999999999999887654 34566777899999999999999999998887654 445667777777776
Q ss_pred h--cCCHHHHHHHHHHHHHCCCC------CCHhHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHCCCCCCH
Q 044815 484 R--QKKMKESEKFFQEAITAGLF------PTKETYTSMICGYLRDGNISSAVKYFQ-------------RMNQIGCAPDN 542 (675)
Q Consensus 484 ~--~g~~~~A~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-------------~m~~~~~~p~~ 542 (675)
+ -+++.++.++|..-.. ++ -+...|..++-.|.+.|+++.|....- +... ...|.
T Consensus 1326 Ky~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~ 1401 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANV 1401 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccH
Confidence 5 3456666666654332 22 256789999999999999999984322 1111 23456
Q ss_pred HHHHHHHHHHHhcC
Q 044815 543 ITYGALISGLCKQS 556 (675)
Q Consensus 543 ~~~~~l~~~~~~~g 556 (675)
..|...+.-|...+
T Consensus 1402 elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1402 ELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHhhC
Confidence 66766676666433
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=4.4e-17 Score=174.29 Aligned_cols=428 Identities=10% Similarity=0.037 Sum_probs=283.3
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 044815 211 FDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK 290 (675)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (675)
|++..+.. +-|...|..++. +.+.|++++|..+|+++.+.. .-+...|..++..+.+. |++++|..+|++.+..
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~---~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKA---KNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTT
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Confidence 34444432 447778888887 477888888888888887752 22555677777777665 6788888888888765
Q ss_pred CCCCChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHhcCCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHH
Q 044815 291 GWKPNVYTHTVLIDGL-CKKGWTEKAFR----LFLKLVRSDNYKP-NVHTYTAMISGYCK---------EEKMNRAEMLL 355 (675)
Q Consensus 291 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~~~~~~A~~~~ 355 (675)
.|++..|..++... ...|+.++|.+ +|++.+...|..| +...|...+....+ .|++++|..+|
T Consensus 76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 35666666666433 34566666554 6666655444333 45566666665544 56777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HH
Q 044815 356 ERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK------AF 429 (675)
Q Consensus 356 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------~~ 429 (675)
++.++.........|..........|. .+...++. .+.++++.|..++++ ..
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 777762111111222222111000010 00011110 123445566655554 22
Q ss_pred hCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------
Q 044815 430 QRE---LQAD--------KITYTILLSEHLKQ----AET----KQALGLFCRMVKAGLNPDIHAYTTLIAAFCR------ 484 (675)
Q Consensus 430 ~~~---~~~~--------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~------ 484 (675)
+.. ++|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 221 2332 23455544333221 222 47778888888763 4567888888888775
Q ss_pred -cCCHH-------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHh
Q 044815 485 -QKKMK-------ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-N-ITYGALISGLCK 554 (675)
Q Consensus 485 -~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~ 554 (675)
.|+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 68887 89999999986322346788999999999999999999999999984 564 3 578888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPC-EVTRVTLAYE-YCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
.|++++|..+|++.++. .|+ ...+...+.. +...|+.++|.++|++..+ +.+...|..++..+.+.|+.++|..
T Consensus 369 ~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 369 AEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 99999999999999884 333 2333333332 4468999999999998655 4467889999999999999999999
Q ss_pred HHHHHhcCCCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 631 FFHKLLGKDQN-V--DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 631 ~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+|++++..++. | ....|...+......|+.+.+..+.+++++.
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999988654 2 2458888888888999999999999988764
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-18 Score=174.62 Aligned_cols=268 Identities=9% Similarity=0.036 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044815 399 TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTL 478 (675)
Q Consensus 399 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 478 (675)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566677888999999999999999999998864 4456677778889999999999999999999874 4467889999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 044815 479 IAAFCRQK-KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSK 557 (675)
Q Consensus 479 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 557 (675)
...+...| ++++|...|+++.+... .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 99999999999998753 457789999999999999999999999998853 2345677779999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----------CCChhhHHHHHHHHHccCCHH
Q 044815 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK-----------KLWIRTVNTLIRKLCSEKRVG 626 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~ 626 (675)
+++|...++++++... .+...+..++..|...|++++|...++++.. +.+...|..++..+.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998432 2457778899999999999999999998765 234568899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 627 MAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+|+..++++++.+|. +...+..++.++...|++++|.+.++++++
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999988 889999999999999999999999998875
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=2.3e-19 Score=182.72 Aligned_cols=289 Identities=12% Similarity=0.051 Sum_probs=210.9
Q ss_pred hcCCHHHHHH-HHHHHhhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 379 KVGNFERAYD-LMDLMGKEGC-TP--NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETK 454 (675)
Q Consensus 379 ~~g~~~~A~~-~~~~m~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 454 (675)
..|++++|.+ .+++..+... .| +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6665443211 11 23456667777777777777777777777653 345667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH---------------HHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS---------------MICGYLR 519 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~ 519 (675)
+|+..++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 7777777777664 446677777777777888888888888777775422 2222211 2333348
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044815 520 DGNISSAVKYFQRMNQIGCA-PDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAM 597 (675)
Q Consensus 520 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 597 (675)
.|++++|...++++.+.... ++..++..+...+...|++++|...++++++. .| +...+..++..|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999875311 14788899999999999999999999999884 34 3567888999999999999999
Q ss_pred HHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC----------CHHHHHHHHHHHHhcCchhHHHH
Q 044815 598 IILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV----------DRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 598 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
..++++.. +.+...+..++..|.+.|++++|...|+++++..|.. ...+|..++.++...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999765 4467788999999999999999999999999887762 17899999999999999999999
Q ss_pred HHHHHHh
Q 044815 666 LSQRIAE 672 (675)
Q Consensus 666 ~~~~~~~ 672 (675)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 9886654
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=4.2e-15 Score=164.25 Aligned_cols=471 Identities=12% Similarity=0.079 Sum_probs=334.9
Q ss_pred cchhhhHHHHHHHHHhCCChhHH-H---HHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCC--------CCHHHHHHHHH
Q 044815 130 RHFMRLYIVCATSLISNGNFERA-H---EVMQC-MVSSFAEIGRLKEGFSMVIEMTNNGLP--------LITSTLNRVVG 196 (675)
Q Consensus 130 ~~~~~~y~~~~~~l~~~~~~~~a-~---~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~ 196 (675)
.....+|++++.++...++-.+. + ..|+. ++--|+...++..|.-.+++ |-. .....|....+
T Consensus 870 ~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~----g~~d~eli~vt~~n~l~k~~ar 945 (1630)
T 1xi4_A 870 CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYER----GQCDLELINVCNENSLFKSLSR 945 (1630)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcc----cCCcHHHHHHHhcchhHHHHHH
Confidence 44677899999999876554443 2 24443 34457777777666665553 211 11122333333
Q ss_pred HHHhcCChhH-----------HHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCC--CCCHHHH
Q 044815 197 IACELGLVEY-----------AEEVFDEMCARGV--CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGA--ILDNATL 261 (675)
Q Consensus 197 ~~~~~g~~~~-----------A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~ 261 (675)
-+.+..+.+- =..+.+......+ ..|+.--...+++|...|.+.+|++++++..-.+- .-+...-
T Consensus 946 ylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 946 YLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred HHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 3333332221 1123333222111 22444456678899999999999999999984421 1244556
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 262 TLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISG 341 (675)
Q Consensus 262 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 341 (675)
+.++....+. +..+..+...+.... + ...+...+...|.+++|..+|++.. -.....+.++.
T Consensus 1026 nlLi~tAIka----D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie- 1087 (1630)
T 1xi4_A 1026 NLLILTAIKA----DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE- 1087 (1630)
T ss_pred HHHHHHHHHh----ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH-
Confidence 6666666664 445555555554321 1 3447788899999999999998852 12222333333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 342 YCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEA 421 (675)
Q Consensus 342 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 421 (675)
..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|
T Consensus 1088 --~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1088 --HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred --HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHH
Confidence 678899999998865 25788999999999999999999999663 4788889999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 044815 422 YELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA 501 (675)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 501 (675)
.+.|...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+
T Consensus 1154 IeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1154 VKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99999888754 33333445889999999988644442 2 446677778999999999999999999885
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 502 GLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRV 581 (675)
Q Consensus 502 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 581 (675)
..|..+..+|++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+.
T Consensus 1222 ------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLe 1284 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 1284 (1630)
T ss_pred ------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHH
Confidence 48999999999999999999999976 356889999999999999999988766432 3455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHc--cCCHHHHHHHHHHHhcCCC-----CCCHHHHHHHHH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCS--EKRVGMAALFFHKLLGKDQ-----NVDRVSLAALKN 652 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~ 652 (675)
.++..|.+.|.+++|+.+++....- .....|+-+...|++ -++..++.++|..-....+ . +...|..+..
T Consensus 1285 eli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e-~~~lW~elv~ 1363 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE-QAHLWAELVF 1363 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH-HHHHHHHHHH
Confidence 8999999999999999999887553 345567667777665 5578888888886555433 3 5678999999
Q ss_pred HHHhcCchhHHHHH
Q 044815 653 ACYESNKYALFSDL 666 (675)
Q Consensus 653 ~~~~~g~~~~A~~~ 666 (675)
.|.+.|+++.|...
T Consensus 1364 LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhcccHHHHHHH
Confidence 99999999999843
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=3.2e-16 Score=167.59 Aligned_cols=421 Identities=8% Similarity=0.024 Sum_probs=248.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHH
Q 044815 185 PLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLL 264 (675)
Q Consensus 185 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 264 (675)
|.+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.+... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 557778888887 46788888888888888875 35577788888888888888888888888888753 566666655
Q ss_pred HHHHHhcCCCCCHHHHH----HHHHHHHHc-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCC
Q 044815 265 ITAFCDKGFRGSIKQAF----ELLEEMVRK-GWKP-NVYTHTVLIDGLCK---------KGWTEKAFRLFLKLVRSDNYK 329 (675)
Q Consensus 265 l~~~~~~~~~~~~~~a~----~~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 329 (675)
+...... .|+.++|. ++|+..... |..| +...|...+....+ .|++++|..+|++.++. ...
T Consensus 86 ~~~~~~~--~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~ 162 (530)
T 2ooe_A 86 LSYVRET--KGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMI 162 (530)
T ss_dssp HHHHHHH--TTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCT
T ss_pred HHHHHHH--ccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhh
Confidence 5433222 14444444 466665542 4443 45566666666554 68899999999988762 111
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------hhcC---CCC
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLM------GKEG---CTP 400 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~~ 400 (675)
.....|..........+. .+...++. .+.++++.|..+++++ .+.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 112233322211100010 00111110 0123344444444431 1111 223
Q ss_pred C--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH---
Q 044815 401 N--------IYAYNAIIDGLCKK----GRV----QEAYELLKKAFQRELQADKITYTILLSEHLK-------QAETK--- 454 (675)
Q Consensus 401 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~--- 454 (675)
+ ...|...+...... ++. +.+..+|++++.. .+.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 2 23444444332221 122 3566667666654 23456666666666654 56655
Q ss_pred ----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHH
Q 044815 455 ----QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--KETYTSMICGYLRDGNISSAVK 528 (675)
Q Consensus 455 ----~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 528 (675)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++.. |+ ...|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777652223356677777777777777777777777777743 33 2467777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 529 YFQRMNQIGCAPDNITYGALISG-LCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 529 ~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
+|++..+.. +.+...|...+.. +...|++++|..+|++.++. .|+ ...+..++..+.+.|+.++|..+|++....
T Consensus 378 ~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 777776632 1122223222222 33577778888888777763 343 455666777777778888888888776553
Q ss_pred -C-C----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 607 -L-W----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 607 -~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+ + ...|...+....+.|+.+.+..+++++.+..|
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 2 22677777777777888888888887777655
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4.9e-18 Score=172.80 Aligned_cols=301 Identities=13% Similarity=0.019 Sum_probs=166.3
Q ss_pred hcCCHHHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 308 KKGWTEKAFR-LFLKLVRSDNYKP--NVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFE 384 (675)
Q Consensus 308 ~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 384 (675)
-.|++++|.+ .|.+..+.....| +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777776 6665443221112 24456677777777888888888888877753 235667777777788888888
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 385 RAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 385 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
+|...++++.+.. +.+..++..+...+...|++++|.+.++++.+..+. +...+..+... ..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh---------
Confidence 8888888777764 446777777888888888888888888887765422 11111111000 00
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI 543 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 543 (675)
. ..+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|+..++++.+.. +.+..
T Consensus 178 -~-~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 178 -G-AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred -h-hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0 000 00111122222 5555666666666555543211 34555556666666666666666666655532 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCC-----------h
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLW-----------I 609 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-----------~ 609 (675)
++..++..+...|++++|...++++++. .| +...+..++..|.+.|++++|...++++.. +.+ .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 5566666666666666666666666552 23 234555566666666666666666665433 112 4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
.+|..++.+|...|++++|..++++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 5666677777777777777666654
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.3e-16 Score=168.25 Aligned_cols=361 Identities=14% Similarity=0.055 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-C
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRS-------DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ-----G-L 363 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g-~ 363 (675)
..||.|...+...|++++|++.|++.++. ...+....+|+.+...|...|++++|...+++..+. + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34455555555555555555554443221 001122344555555555555555555555444321 0 0
Q ss_pred CC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 364 LP-NTNTYTSLIYGHCKV--GNFERAYDLMDLMGKEGCTPNIYAYNAIIDG---LCKKGRVQEAYELLKKAFQRELQADK 437 (675)
Q Consensus 364 ~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~ 437 (675)
.+ ...++..+..++... +++++|.+.|++..+.. +-+...+..+... +...++.++|++.+++.++.+ +.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 01 123333333333222 23455555555544432 2223333333322 222344445555555544432 1223
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 044815 438 ITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSM 513 (675)
Q Consensus 438 ~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 513 (675)
.++..+...+.. .++.++|...+++..... +.+..++..+...+...|++++|...++++.+..+ .+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHH
Confidence 333333322222 234445555555544432 23344455555555555555555555555554321 123334433
Q ss_pred HHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 514 ICGYLR-------------------DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGIS 574 (675)
Q Consensus 514 i~~~~~-------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 574 (675)
..+|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|+..|+++++....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 333321 123456666666665532 223345666677777777777777777777764332
Q ss_pred CCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 575 PCE--VTRVTLAY-EYCKQGDSATAMIILESLDK-KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 575 p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
+.. ..+..++. .+...|+.++|+..|++..+ .++...+. +..+.+..++++.++.+|. +..+|..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~-~~~~~~~L 436 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGA-DSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC--CTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 211 11222332 23456777777777776544 22221111 1223445566666666776 66777777
Q ss_pred HHHHHhcCchhHHHHHHHHHHh
Q 044815 651 KNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 651 ~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+.+|...|++++|.+.++++++
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHCC-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777777777765
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.1e-18 Score=175.36 Aligned_cols=265 Identities=11% Similarity=0.023 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAF 482 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 482 (675)
..+..+...+.+.|++++|...|+++++.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666666666666666666666543 3345566666666666666666666666666553 33466666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 044815 483 CRQKKMKESEKFFQEAITAGLF---------PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCA-PDNITYGALISGL 552 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~ 552 (675)
...|++++|...|+++.+.... .....+..+...+...|++++|+..++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6667777777776666653210 01223334566777788888888888887774311 1467777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
...|++++|...++++++. .| +..++..++.+|.+.|++++|+..++++.. +.+...|..++.+|.+.|++++|+
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888773 33 356677788888888888888888887654 335667788888888888888888
Q ss_pred HHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 630 LFFHKLLGKDQNV-----------DRVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 630 ~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
..|+++++..|.. +..+|..++.++...|+.+.|.+..++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 8888887765431 24678888888888888888887776543
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.9e-18 Score=170.31 Aligned_cols=379 Identities=12% Similarity=0.080 Sum_probs=168.7
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHH
Q 044815 200 ELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQ 279 (675)
Q Consensus 200 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 279 (675)
+.|+.++|.++++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+... |++++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~---g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS---GNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC---CCHHH
Confidence 5667788888887772 2347888888888888888888888652 4666777777777765 67888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044815 280 AFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMK 359 (675)
Q Consensus 280 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 359 (675)
|+..++..++. .+++.+.+.++.+|.+.|+++++.+++. .|+..+|+.++..|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 88866666553 3456777788888888888888776663 266678888888888888888888888866
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 360 EQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKIT 439 (675)
Q Consensus 360 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 439 (675)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 35778888888888888888888877 2678888888888888888888554433 2233333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhHHH
Q 044815 440 YTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ--KKMKESEKFFQEAITAGLFP------TKETYT 511 (675)
Q Consensus 440 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~ 511 (675)
...++..|.+.|++++|+.+++...... +-....|+-|..+|++- +++.+..+.|..- .+++| +...|.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHH
Confidence 4567788888888888888888887665 55677777777777653 3444444444321 12222 466788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIG-----------CAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR 580 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 580 (675)
.+.-.|...++++.|....-+-.... -..+...|-..+.-|.. ....++.-+...+...+.+
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~----- 359 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDH----- 359 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCH-----
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCc-----
Confidence 88888999999998876432211100 01233344444444441 1122222222222211221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
...+..+.+.|.+.-+..+++.++......+-.++-..|...++++.-+...+
T Consensus 360 ~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22345567778887777888777766666666677778888888876554443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.6e-16 Score=165.93 Aligned_cols=385 Identities=11% Similarity=-0.047 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHC-----C--CCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--
Q 044815 221 ADASSYKLMVVAYCRMGRVTEADRWLSAMLDR-----G--AIL-DNATLTLLITAFCDKGFRGSIKQAFELLEEMVRK-- 290 (675)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~~-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-- 290 (675)
.....||.|...+...|++++|++.|++..+. + ..| ...+|+.+...+... |++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~---g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM---GRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHhH
Confidence 34667888999999999999999999887642 1 122 345677777777776 6788887777766542
Q ss_pred ---C-CC-CChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHH
Q 044815 291 ---G-WK-PNVYTHTVLIDGLCKK--GWTEKAFRLFLKLVRSDNYKPNVHTYTAMISG---YCKEEKMNRAEMLLERMKE 360 (675)
Q Consensus 291 ---~-~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~ 360 (675)
+ .. ....++..+..++.+. +++++|++.|++.++.. +.+...+..+... +...++.++|++.+++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1 01 1234555555555543 45777888877776643 2233344444333 3345666777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 361 QGLLPNTNTYTSLIYGHCK----VGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD 436 (675)
Q Consensus 361 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 436 (675)
... .+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...++++.+.. +.+
T Consensus 204 l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 204 LNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp HCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred cCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 422 245555555444443 345667777777766654 4456677777777777777777777777777653 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
..++..+...|...+.... ... . ..........+..+.|...++++.+... .+...+..+...
T Consensus 281 ~~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~ 343 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHH
Confidence 4555555544432211100 000 0 0000111122346788888888887653 456788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDN--ITYGALIS-GLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
|...|++++|+..|++..+....+.. ..+..+.. .....|++++|+..|++.++ +.|+....... .
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------K 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------H
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------H
Confidence 99999999999999999885432221 12333333 24578999999999999998 66665332222 2
Q ss_pred HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 594 ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 594 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+.+++++... +.+..+|..++.+|...|++++|++.|+++++.++.
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334445555432 456788999999999999999999999999999875
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=3.8e-17 Score=163.04 Aligned_cols=261 Identities=9% Similarity=-0.023 Sum_probs=172.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ 485 (675)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 485 (675)
..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 344444455555555555555554432 2244444455555555555555555555555442 23445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSM--------------IC-GYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
|++++|.+.++++.+... .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 555555555555555421 111222222 22 3667788888888888887753 335778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
.+...|++++|...++++++. .| +...+..++..|...|++++|...++++.+ +.+...|..++..+.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 888888888888888888874 34 356677888888889999999988888655 3456778888999999999999
Q ss_pred HHHHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 628 AALFFHKLLGKDQNV-----------DRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 628 A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
|...++++++..|.. +..++..++.++...|++++|.++++++++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988877663 577888999999999999999988876554
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.1e-16 Score=156.10 Aligned_cols=270 Identities=10% Similarity=0.051 Sum_probs=195.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNI--YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAET 453 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 453 (675)
-....|+++.|+...+..... .|+. .....+.++|...|++++|+..++. ..+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345668888888877765543 2332 3445667888888888888876644 2355667777888888888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 454 KQALGLFCRMVKAGLNP-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 454 ~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
++|++.++++...+..| +...+..+...+...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765434 566677777888888888888888876 35777888888888888888999888888
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC
Q 044815 533 MNQIGCAPDNITY---GALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KL 607 (675)
Q Consensus 533 m~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 607 (675)
+.+. .|+.... ..++..+...|++++|..+|+++++.. +.+...++.++.+|.+.|++++|...++++.. +.
T Consensus 156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8875 3553311 123334445688999999999988752 23556778888889999999999999888654 44
Q ss_pred ChhhHHHHHHHHHccCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 044815 608 WIRTVNTLIRKLCSEKRVGM-AALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
+..++..++..+...|+.++ +.++++++++.+|. ++.+.. ...+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHHH----HHHHHHHHHHHHH
Confidence 67788888888888998875 57888999999887 665443 3445555555544
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=4.8e-17 Score=165.27 Aligned_cols=274 Identities=11% Similarity=-0.003 Sum_probs=144.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLI 374 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 374 (675)
+...+..+...+.+.|++++|.+.|+++++.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34456667777777777777777777776543 3456667777777777777777777777766642 22466666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNI-YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAET 453 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 453 (675)
..|...|++++|...++++.+.. |+. ..+..+. .....+..+...+...|++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhH
Confidence 66777777777777776666542 111 1111110 0011122234444444555
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 044815 454 KQALGLFCRMVKAGLN-PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQR 532 (675)
Q Consensus 454 ~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 532 (675)
++|+..++++.+.... ++..++..+...+...|++++|.+.|+++.+... .+..+|..+..+|...|++++|+..+++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554443211 1344555555555555555555555555554422 2345555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 044815 533 MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-------------CEVTRVTLAYEYCKQGDSATAMII 599 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~ 599 (675)
+.+.. +.+..++..+..+|...|++++|...|+++++. .| +...+..+..++...|+.+.|.+.
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 55531 122455555555566666666666666655542 11 134455566666666666666555
Q ss_pred HHH
Q 044815 600 LES 602 (675)
Q Consensus 600 ~~~ 602 (675)
.++
T Consensus 350 ~~~ 352 (365)
T 4eqf_A 350 NLG 352 (365)
T ss_dssp HTT
T ss_pred HHh
Confidence 543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=6.5e-17 Score=157.71 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=206.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044815 409 IDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKM 488 (675)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 488 (675)
++-....|+++.|+..+++.....+.........+.++|...|++++|+..++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345567899999999998765432222234556778999999999999987654 2366788889999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 489 KESEKFFQEAITAGLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYES 567 (675)
Q Consensus 489 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 567 (675)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999876545 566677788999999999999999987 35778899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 568 MIGKGISPCEVTRVTL----AYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 568 ~~~~g~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+. .|+.. ...+ +..+...|++++|..+|+++.. +.+...|+.++.++.+.|++++|...|+++++.+|.
T Consensus 156 ~~~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9984 46543 2222 2344456899999999999866 457788999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHhcCchhH-HHHHHHHHHh
Q 044815 642 VDRVSLAALKNACYESNKYAL-FSDLSQRIAE 672 (675)
Q Consensus 642 p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 672 (675)
+..++..++.++...|+.++ +.++++++++
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999976 5788888875
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=6.4e-18 Score=167.91 Aligned_cols=281 Identities=14% Similarity=0.176 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66788888887772 2347788888888888888888887542 5666788888888888888888886
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ 434 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 434 (675)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 6666553 4456777788888888888888777764 356678888888888888888888888865
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 514 (675)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|+..|+++.|...... +...+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 36788888888888888888888877 2677888888888888888888555443 223444455677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ--SKLDEACQFYESMIGKGISP------CEVTRVTLAYE 586 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~ 586 (675)
..|.+.|++++|+.+++...... +-....|+.+.-+|++- ++..+.++.|..-+ +++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888876543 33456677776666654 23333333333211 2333 23345667778
Q ss_pred HHHcCCHHHHHHHH
Q 044815 587 YCKQGDSATAMIIL 600 (675)
Q Consensus 587 ~~~~g~~~~A~~~~ 600 (675)
|.+-++++.|....
T Consensus 292 y~~~~e~d~A~~tm 305 (449)
T 1b89_A 292 YDKYEEYDNAIITM 305 (449)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHhhchHHHHHHHH
Confidence 88888888776644
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=6.7e-16 Score=153.94 Aligned_cols=228 Identities=10% Similarity=0.015 Sum_probs=108.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044815 337 AMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 416 (675)
.+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 333444444444444444444443311 134444444444444455555555554444432 233444455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTIL--------------LS-EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+...
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 555555555555443211 11111111 11 2445555566666665555543 2345555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 5556666666666655555421 234455555555555555555555555555432 12344555555555555555555
Q ss_pred HHHHHHHHh
Q 044815 562 CQFYESMIG 570 (675)
Q Consensus 562 ~~~~~~~~~ 570 (675)
...++++++
T Consensus 260 ~~~~~~a~~ 268 (327)
T 3cv0_A 260 AKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.4e-18 Score=180.36 Aligned_cols=152 Identities=12% Similarity=0.120 Sum_probs=113.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVR--SDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTS 372 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 372 (675)
-..+||+||++||+.|++++|.++|.+|.+ ..|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456888888888888888888888877643 246788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 044815 373 LIYGHCKVGN-FERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD------KITYTILLS 445 (675)
Q Consensus 373 li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~ 445 (675)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. ..++.++++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 8888888887 477888888888888888888888888765553 333333333 2233333 344455566
Q ss_pred HHHhcC
Q 044815 446 EHLKQA 451 (675)
Q Consensus 446 ~~~~~~ 451 (675)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-15 Score=145.28 Aligned_cols=224 Identities=15% Similarity=0.087 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGL--NPD----IHAY 475 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~ 475 (675)
...+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|+..+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556667777777777777777777777665 5666777777777777777777777777665421 111 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCK 554 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 554 (675)
..+...+...|++++|...|+++.+.. |+. ..+...|++++|...++++... .| +...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 666667777777777777777766642 342 2344556666666666666653 23 23455666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFF 632 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 632 (675)
.|++++|...++++++... .+...+..++..|.+.|++++|...++++.. +.+...|..++..+.+.|++++|...+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666666665321 1344555666666666666666666666543 234555666666666666666666666
Q ss_pred HHHhcCC
Q 044815 633 HKLLGKD 639 (675)
Q Consensus 633 ~~~~~~~ 639 (675)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 6666655
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=177.50 Aligned_cols=122 Identities=17% Similarity=0.270 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 044815 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMK---EQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAY 405 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 405 (675)
..-..|||++|++||+.|++++|.++|++|. ..|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446799999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044815 406 NAIIDGLCKKGRV-QEAYELLKKAFQRELQADKITYTILLSEHLKQ 450 (675)
Q Consensus 406 ~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 450 (675)
|++|+++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999984 78999999999999999999999988755543
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=2e-15 Score=157.22 Aligned_cols=370 Identities=13% Similarity=0.043 Sum_probs=213.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-----
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWT---EKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEE----- 346 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----- 346 (675)
|++++|+++|++..+.| +...+..|...|...|+. ++|.+.|.+..+. +...+..+...+...+
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCc
Confidence 56666666666665554 333444455555556666 6777776666531 3444555555444433
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044815 347 KMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNF---ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYE 423 (675)
Q Consensus 347 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 423 (675)
++++|+..|++..+.|... .+..|...|...+.. .++.+.+....+.| +......+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 5667777777776654332 444455555544332 23444455544444 33455566666666665444443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 044815 424 LLKKAFQRELQADKITYTILLSEHLKQA---ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQ----KKMKESEKFFQ 496 (675)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~ 496 (675)
....+.+.-...+...+..+...|...| +.++|+..|++..+.| .++...+..|...|... +++++|.++|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3222222212223336677777777777 7778888888877776 44555556666666544 67888888888
Q ss_pred HHHHCCCCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 044815 497 EAITAGLFPTKETYTSMICG-Y--LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS-----KLDEACQFYESM 568 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 568 (675)
+.. . -+...+..|... | ...+++++|+.+|++..+.| +...+..+...|. .| ++++|...|++.
T Consensus 242 ~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 776 3 345566666665 3 45778888888888887765 5666666776666 44 888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCC
Q 044815 569 IGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 569 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 640 (675)
. .| +......|+..|.. ..+.++|..+|++.....+......|+..|.. ..+.++|..+|+++.+.|.
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7 33 45667777777766 34788888888888777777777777777764 4578888888888888875
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 641 NVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 641 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
. +.......+......++.++|.+++++..+
T Consensus 390 ~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 P-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp H-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4 333333333333445566777777766554
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=5e-14 Score=136.42 Aligned_cols=226 Identities=12% Similarity=0.031 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044815 401 NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK----QAETKQALGLFCRMVKAGLNPDIHAYT 476 (675)
Q Consensus 401 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 476 (675)
+..++..+...+...|++++|...|++..+ ..+...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 566677777777777788888877777776 2345566667777777 777777777777777664 566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044815 477 TLIAAFCR----QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGAL 548 (675)
Q Consensus 477 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 548 (675)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777653 56667777777777 777777777777777644 45556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHH
Q 044815 549 ISGLCK----QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLC 620 (675)
Q Consensus 549 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 620 (675)
...|.. .+++++|...|++..+.+ +...+..++..|.. .+++++|...+++..+..+...+..++..|.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666666 677777777777777643 34566667777777 7777777777777666555666666777777
Q ss_pred c----cCCHHHHHHHHHHHhcCCCC
Q 044815 621 S----EKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 621 ~----~g~~~~A~~~~~~~~~~~~~ 641 (675)
+ .+++++|+++|+++++.++.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 6 67777777777777776654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=2.7e-15 Score=139.56 Aligned_cols=197 Identities=13% Similarity=0.025 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGAL 548 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 548 (675)
+++...+..+...+.+.|++++|...|+++++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556666777777777777777777777776543 356667777777777777777777777777642 2235567777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHH
Q 044815 549 ISGLCKQ-----------SKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTL 615 (675)
Q Consensus 549 ~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 615 (675)
..++... |++++|+..+++.++ +.|+ ...+..++..|...|++++|+..|++... ..+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7777777 888888888888887 4454 45667788888888888888888888644 2556678888
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
+.+|...|++++|+..|+++++.+|. +...+..++.++...|++++|.+.++++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88999999999999999999999888 8888999999999999999999888765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=2.3e-15 Score=156.68 Aligned_cols=346 Identities=12% Similarity=0.007 Sum_probs=240.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044815 301 VLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKM---NRAEMLLERMKEQGLLPNTNTYTSLIYGH 377 (675)
Q Consensus 301 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 377 (675)
.+...+.+.|++++|++.|.+..+.+ +...+..+...|...|+. ++|...|++..+. +...+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 36677888999999999999987753 334455566666777887 9999999998864 555566666655
Q ss_pred HhcC-----CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 378 CKVG-----NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQ---EAYELLKKAFQRELQADKITYTILLSEHLK 449 (675)
Q Consensus 378 ~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 449 (675)
...+ ++++|...|++..+.|. + ..+..|...|...+..+ ++.+.+......| +...+..+...|..
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 5554 78999999999999773 2 36777888888766544 3455555555443 35566777788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----CC
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK---KMKESEKFFQEAITAGLFPTKETYTSMICGYLRD----GN 522 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 522 (675)
.+.++++......+.+.-...++..+..|...|...| +.++|.+.|++..+.|. ++...+..|...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 7755444443322222211223337888999999999 99999999999999875 5666667777777654 79
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CHH
Q 044815 523 ISSAVKYFQRMNQIGCAPDNITYGALISG-L--CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG-----DSA 594 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~ 594 (675)
+++|+.+|++.. .| +...+..+... + ...+++++|...|++..+.| +......|+..|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 33 45566666666 4 46899999999999999977 5678888888887 55 999
Q ss_pred HHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCchhHHHHH
Q 044815 595 TAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE----SNKYALFSDL 666 (675)
Q Consensus 595 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 666 (675)
+|.++|++.. +.+...+..|+..|.. ..++++|..+|+++.+.|. ......|+..|.. ..+.++|..+
T Consensus 305 ~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 305 AAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9999999988 8888889999988877 4499999999999998874 4567778887764 5689999999
Q ss_pred HHHHHhc
Q 044815 667 SQRIAEG 673 (675)
Q Consensus 667 ~~~~~~~ 673 (675)
++++.+.
T Consensus 381 ~~~A~~~ 387 (452)
T 3e4b_A 381 SQLAKAQ 387 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHHC
Confidence 9998763
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.4e-15 Score=140.39 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HhHHHH
Q 044815 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF--PT----KETYTS 512 (675)
Q Consensus 439 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 512 (675)
.+..+...+...|++++|+..++++.+.. .+...+..+..++...|++++|...++++.+.... ++ ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555544 44455555555555555555555555555443210 11 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQG 591 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 591 (675)
+...|...|++++|...++++.+. .|+. ..+...|++++|...++++.+ ..|+ ...+..++..|...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 555555555555555555555542 2332 123334445555555555554 2222 233344555555555
Q ss_pred CHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 592 DSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 592 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
++++|...++++.. +.+...|..++..+.+.|++++|+..++++++.+|. +...+..++.++...|++++|.+.+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555555555433 223444555555555555555555555555555544 455555555555555555555555555
Q ss_pred HHh
Q 044815 670 IAE 672 (675)
Q Consensus 670 ~~~ 672 (675)
+++
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=1.1e-13 Score=134.06 Aligned_cols=221 Identities=11% Similarity=0.043 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR----QKKMKESEKFFQEAITAGLFPTKETYTS 512 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 512 (675)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344445555555555555555555555552 233445555555555 555555555555555543 4455555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 513 MICGYLR----DGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK----QSKLDEACQFYESMIGKGISPCEVTRVTLA 584 (675)
Q Consensus 513 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 584 (675)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..++
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555555532 44455555555555 555555555555555533 234444555
Q ss_pred HHHHH----cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 585 YEYCK----QGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 585 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
..|.. .+++++|...+++..+..+...+..++..|.. .+++++|+..|+++++.++ ...+..++.+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHc
Confidence 55555 55555555555555544444555555555555 5555555555555555532 3445555555555
Q ss_pred ----cCchhHHHHHHHHHHh
Q 044815 657 ----SNKYALFSDLSQRIAE 672 (675)
Q Consensus 657 ----~g~~~~A~~~~~~~~~ 672 (675)
.+++++|.++++++++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHH
Confidence 5555555555555543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=5.7e-15 Score=143.20 Aligned_cols=243 Identities=10% Similarity=-0.064 Sum_probs=165.5
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 415 KGRVQEAYELLKKAFQREL---QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKES 491 (675)
Q Consensus 415 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 491 (675)
.|++++|+..++++.+... +.+..++..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566777777777665422 1234556666777777777777777777776653 34567777777777777888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
.+.|+++.+... .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888877777542 35667777778888888888888888887764 354444444444556668888888888777663
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC------ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 572 GISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKL------WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 572 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
. |+......++..+...++.++|...+++..... +...|..++..+.+.|++++|...|+++++.+|. +..
T Consensus 174 ~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NFV 250 (275)
T ss_dssp S--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TCH
T ss_pred C--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hHH
Confidence 2 222233346666777777788888887765431 2467888999999999999999999999998875 433
Q ss_pred HHHHHHHHHHhcCchhHHHHHH
Q 044815 646 SLAALKNACYESNKYALFSDLS 667 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~ 667 (675)
..+.++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3366788889999988775
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=4.3e-14 Score=136.72 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNP--DIHAYTTLIAA 481 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~ 481 (675)
.+......+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++..+....+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556667777777888888877777653 2344467777777778888888888887777632111 23457788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|.+.|+++.+... .+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887643 356788888889999999999999999887752 33466777777344455699999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhhC----CC------hhhHHHHHHHHHccCCHHH
Q 044815 562 CQFYESMIGKGISPC-EVTRVTLAYEYCKQGD---SATAMIILESLDKK----LW------IRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~----~~------~~~~~~l~~~~~~~g~~~~ 627 (675)
...|+++++ ..|+ ...+..++..+...|+ .++|...++++.+. ++ ...|..++..|.+.|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988 4454 4666778888888888 77788888876541 33 2467889999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
|+..|+++++.+|. |...+..+.......+
T Consensus 240 A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPT-NKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHC-------
T ss_pred HHHHHHHHHhcCcc-HHHHHHHhhhhhcccc
Confidence 99999999999998 8888887777665544
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=4.7e-14 Score=131.17 Aligned_cols=192 Identities=14% Similarity=-0.013 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 044815 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGY 517 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 517 (675)
..+..+...+...|++++|+..+++.++.. +.+...+..+...+.+.|++++|...++++++..+ .+...+..+...+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 334444444444444444444444444432 22344444444444444555555555544444321 2334444444444
Q ss_pred HHc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044815 518 LRD-----------GNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAY 585 (675)
Q Consensus 518 ~~~-----------g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 585 (675)
... |++++|+..+++..+. .| +...+..+..++...|++++|+..|+++++.. .+...+..++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 444 6677777777766663 34 35566666667777777777777777776644 45566666777
Q ss_pred HHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 586 EYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
+|...|++++|+..++++.. +.+...+..++..+.+.|++++|+..+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777776544 335566677777777777777777777654
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.5e-13 Score=131.17 Aligned_cols=201 Identities=13% Similarity=0.051 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3455555666666666666666666665543 33455566666666666666666666666655432 245555556666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 594 (675)
|...|++++|..+++++.+.+..|+ ...+..+...+...|++++|...++++++.. | +...+..++..|.+.|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666554222332 3455555555666666666666666665522 2 2344455555666666666
Q ss_pred HHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 595 TAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 595 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+|...++++.. +.+...+..++..+.+.|++++|.++++++++..|.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 66666655543 223444555555555666666666666666555554
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.2e-13 Score=139.06 Aligned_cols=248 Identities=10% Similarity=0.062 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE-TKQALGLFCRMVKAGLNPDIHAYTTLIA 480 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li~ 480 (675)
...|..+...+.+.|++++|+..++++++.. +.+...|+.+..++...|+ +++|+..++++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3455666666666777777777777776653 3355666667777777775 777777777777654 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 044815 481 AFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK-QSKLD 559 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~ 559 (675)
++...|++++|...|+++++... -+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 77777777777777777777643 366777777777777788888888888777743 2246677777777777 55546
Q ss_pred HH-----HHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHhh-CCChhhHHHHHHHHHccC-------
Q 044815 560 EA-----CQFYESMIGKGISPC-EVTRVTLAYEYCKQG--DSATAMIILESLDK-KLWIRTVNTLIRKLCSEK------- 623 (675)
Q Consensus 560 ~A-----~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g------- 623 (675)
+| +..|+++++ +.|+ ...+..++..|.+.| ++++|++.++++.. +.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 477777777 4454 356666777777777 57778777777722 234556777777777753
Q ss_pred --CHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHh
Q 044815 624 --RVGMAALFFHKL-LGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 624 --~~~~A~~~~~~~-~~~~~~p~~~~~~~l~~~~~~ 656 (675)
..++|+++|+++ ++.+|. ....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence 258888888888 788876 67777777766554
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.5e-13 Score=138.49 Aligned_cols=227 Identities=9% Similarity=0.012 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK-MKESEKFFQEAITAGLFPTKETYTSMIC 515 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 515 (675)
...|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...|+++++... .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4567888889999999999999999999875 4578899999999999997 9999999999999764 47889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH-cCCH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCK-QGDS 593 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~-~g~~ 593 (675)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++ +.|+ ...++.++.+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999853 33578999999999999999999999999999 4454 5778889999999 6665
Q ss_pred HHH-----HHHHHHHhh--CCChhhHHHHHHHHHccC--CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC------
Q 044815 594 ATA-----MIILESLDK--KLWIRTVNTLIRKLCSEK--RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN------ 658 (675)
Q Consensus 594 ~~A-----~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 658 (675)
++| +..+++... +.+...|+.+...+.+.| ++++|++.++++ +.++. +...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhcccccc
Confidence 777 477877654 457788999999999988 699999999998 77777 8899999999999975
Q ss_pred --c-hhHHHHHHHHH
Q 044815 659 --K-YALFSDLSQRI 670 (675)
Q Consensus 659 --~-~~~A~~~~~~~ 670 (675)
+ +++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 3 58999999998
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=9.9e-14 Score=134.19 Aligned_cols=232 Identities=11% Similarity=0.009 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHH
Q 044815 438 ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--KETYTSMIC 515 (675)
Q Consensus 438 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~ 515 (675)
..+......+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788999999999999999999874 33556888899999999999999999999998432222 334889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 594 (675)
.+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++++++. .|+ ...+..++..+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998853 335678999999999999999999999999884 454 466677773455566999
Q ss_pred HHHHHHHHHhh--CCChhhHHHHHHHHHccCC---HHHHHHHHHHHhcCC---CCCC----HHHHHHHHHHHHhcCchhH
Q 044815 595 TAMIILESLDK--KLWIRTVNTLIRKLCSEKR---VGMAALFFHKLLGKD---QNVD----RVSLAALKNACYESNKYAL 662 (675)
Q Consensus 595 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~ 662 (675)
+|.+.++++.+ +.+...+..++..+...|+ +++|+..++++++.. +.++ ..+|..++..|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999766 3456778888888888888 888999999988764 3321 2578889999999999999
Q ss_pred HHHHHHHHHhc
Q 044815 663 FSDLSQRIAEG 673 (675)
Q Consensus 663 A~~~~~~~~~~ 673 (675)
|.+.++++++.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999763
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.6e-14 Score=149.17 Aligned_cols=276 Identities=12% Similarity=0.030 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHH
Q 044815 368 NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNI----YAYNAIIDGLCKKGRVQEAYELLKKAFQR----E-LQADKI 438 (675)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 438 (675)
..+..+...+...|++++|...++++.+.+ +.+. ..+..+...|...|++++|...++++.+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 334455556667777777777777766653 2222 35666666677777777777777665532 0 011223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCC
Q 044815 439 TYTILLSEHLKQAETKQALGLFCRMVKA----G-LNPDIHAYTTLIAAFCRQKK----------MKESEKFFQEAITAGL 503 (675)
Q Consensus 439 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~ 503 (675)
.+..+...+...|++++|...+++..+. + .+....++..+...+...|+ .++|...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------- 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------- 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence 4455555555555555555555554432 0 01112234444444444444 0000000
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 044815 504 FPTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGIS-PC- 576 (675)
Q Consensus 504 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~- 576 (675)
+++|+..+++..+. +..+ ...++..+...+...|++++|...+++.++.... ++
T Consensus 199 -------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 199 -------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 44444444443221 1001 1224445555555555555555555555441000 01
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC----
Q 044815 577 ---EVTRVTLAYEYCKQGDSATAMIILESLDKK----L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN---- 641 (675)
Q Consensus 577 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 641 (675)
...+..++..|...|++++|...+++.... . ....+..++..+...|++++|..+++++++....
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 113444555566666666666655554321 1 1234555666666666666666666665544221
Q ss_pred -CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 642 -VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 642 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
....++..++.+|...|++++|.++++++++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0123555666666666666666666666654
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=6.5e-11 Score=127.22 Aligned_cols=442 Identities=10% Similarity=0.023 Sum_probs=271.4
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCC---H
Q 044815 201 LGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGS---I 277 (675)
Q Consensus 201 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~---~ 277 (675)
....++.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+++... .......|...+..-.+. ++ +
T Consensus 45 ~~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~---~~~~~~ 119 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK---MEELDA 119 (679)
T ss_dssp -CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC-----CCCH
T ss_pred ccCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh---CCcchH
Confidence 334555666666666654 569999999999999999999999999999986 344666777777776665 56 9
Q ss_pred HHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHhcCCC-CCC-HHHHHHHHHHHHh--
Q 044815 278 KQAFELLEEMVRKG-WKPNVYTHTVLIDGLCKKGWT--------EKAFRLFLKLVRSDNY-KPN-VHTYTAMISGYCK-- 344 (675)
Q Consensus 278 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~-~~~-~~~~~~li~~~~~-- 344 (675)
+.+..+|++.+... ..|++..|...+....+.++. +...++|+..+..-|. .++ ...|...+.....
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999999988763 137888888888776666553 3345788888776666 453 5677777765432
Q ss_pred -------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 044815 345 -------EEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKV-GNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG 416 (675)
Q Consensus 345 -------~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 416 (675)
.++++.+..+|++++......-..+|..... +.+. +. ..+.+++.+. ..
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~-~~a~~~~~e~---------------------~~ 256 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQ-LTARRHIGEL---------------------SA 256 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCT-TTHHHHHHHH---------------------HH
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCc-chHHHHHHHh---------------------hH
Confidence 3456778888888875311111233332221 1111 11 0011111110 11
Q ss_pred CHHHHHHHHHHHHh--CCC----C-----------C--C------HHHHHHHHHHHHhcC-------CHHHHHHHHHHHH
Q 044815 417 RVQEAYELLKKAFQ--REL----Q-----------A--D------KITYTILLSEHLKQA-------ETKQALGLFCRMV 464 (675)
Q Consensus 417 ~~~~A~~~~~~~~~--~~~----~-----------~--~------~~~~~~li~~~~~~~-------~~~~A~~~~~~m~ 464 (675)
.++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++.+
T Consensus 257 ~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL 336 (679)
T 4e6h_A 257 QYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA 336 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH
Confidence 22223333322111 000 0 0 0 123444443322221 1234456677766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESE-KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG------ 537 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------ 537 (675)
.. ++-....|...+..+...|+.++|. ++|++.... ++.+...|-.++....+.|++++|..+|+++.+..
T Consensus 337 ~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 337 QH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 65 3446777777777777777777775 888877764 33455566677777777888888888888776531
Q ss_pred ---CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 044815 538 ---CAPD------------NITYGALISGLCKQSKLDEACQFYESMIGK-GISPCEVTRVTLAYEYCKQG-DSATAMIIL 600 (675)
Q Consensus 538 ---~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~ 600 (675)
-.|+ ...|...+....+.|..+.|..+|+++++. +. .....|...+..-.+.| +.+.|.++|
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0131 235666677667777888888888888774 21 12234433333333443 478888888
Q ss_pred HHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 601 ESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV--DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 601 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+...+ +.+...|...+......|+.+.|..+|++++...+.+ ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus 494 e~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 494 ELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87655 3455566777777777788888888888888776632 3456777777777788888888888887764
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=9e-14 Score=131.85 Aligned_cols=213 Identities=11% Similarity=0.103 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 3445555566666666666666666666543 33566666667777777777777777777666532 356667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 596 (675)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++... .+...+..++..|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776643 33466677777777777888888888877776321 2345666777778888888888
Q ss_pred HHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 597 MIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC 654 (675)
Q Consensus 597 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 654 (675)
...++++.+ +.+...|..++..+.+.|++++|...++++++..|. +...+..+....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~ 237 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Confidence 888877654 335667788888888888888888888888888887 666666555443
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.3e-14 Score=145.51 Aligned_cols=303 Identities=13% Similarity=0.051 Sum_probs=161.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC
Q 044815 329 KPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN----TNTYTSLIYGHCKVGNFERAYDLMDLMGKE----GCTP 400 (675)
Q Consensus 329 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~ 400 (675)
......+......+...|++++|+..|+++.+.+.. + ...+..+...|...|++++|...+++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344555666667777777777777777777765222 2 245666667777777777777777765432 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHH
Q 044815 401 -NIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ-AD----KITYTILLSEHLKQAE-------------TKQALGLFC 461 (675)
Q Consensus 401 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~-------------~~~A~~~~~ 461 (675)
...++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ .+++...
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~-- 162 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA-- 162 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH--
Confidence 1345556666666677777777666665532100 01 2234444444444444 0000000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA----GLF-PTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
+++|...+.+..+. +.. ....++..+...|...|++++|...+++..+.
T Consensus 163 --------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 163 --------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44444444443321 000 01234555555666666666666666655432
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 537 GC-APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 537 ~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
.. .++ ..++..+...+...|++++|...+++.++. +..+. ..++..++..|.+.|++++|...+++....
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 00 111 225556666666666777766666666541 11110 234455666667777777777766664331
Q ss_pred ----CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhcCch
Q 044815 607 ----LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-----VDRVSLAALKNACYESNKY 660 (675)
Q Consensus 607 ----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~ 660 (675)
++ ...+..++..|.+.|++++|..+++++++.... ....++..++.++...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 335566667777777777777777766554211 1234566667777666655
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=5.7e-13 Score=127.14 Aligned_cols=197 Identities=10% Similarity=0.034 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044815 473 HAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGL 552 (675)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 552 (675)
..+..+...+...|++++|...|+++.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4455555556666666666666666655432 245555556666666666666666666655532 22445555556666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
...|++++|..+++++.+.+..|+ ...+..++..|.+.|++++|.+.++++.. +.+...+..++..+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666655323332 23445555566666666666666665443 223445555666666666666666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..++++++..+. +...+..++.++...|++++|.++++++++
T Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665554 555566666666666666666666665544
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=5.6e-13 Score=124.57 Aligned_cols=208 Identities=13% Similarity=0.015 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMI 514 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 514 (675)
.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 445667777778888888888888888877753 44567777777888888888888888887776542 3566777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 044815 515 CGYLRD-GNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQG 591 (675)
Q Consensus 515 ~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 591 (675)
..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++++. .|+ ...+..++..|.+.|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence 777888 888888888887776323343 456777777777888888888888877763 333 456667777777788
Q ss_pred CHHHHHHHHHHHhh--C-CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 592 DSATAMIILESLDK--K-LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 592 ~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
++++|...++++.. + .+...+..++..+...|+.++|..+++.+.+..|. +....
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~ 219 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQ 219 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHH
Confidence 88888877777544 3 45556666666677777777777777777766665 54443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=9.6e-14 Score=131.68 Aligned_cols=200 Identities=10% Similarity=0.018 Sum_probs=158.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 549 (675)
.....|..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3456778888889999999999999999998643 468889999999999999999999999998853 34678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
..+...|++++|...++++.+... .+...+..++..|.+.|++++|...++++.. +.+...+..++..+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999998432 2456778899999999999999999999765 3467788999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 628 AALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 628 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|+..++++++..+. +..++..++.++...|++++|.+.++++++.
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999887 8899999999999999999999999998763
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.4e-12 Score=121.90 Aligned_cols=200 Identities=11% Similarity=0.058 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4445555555555555555555555555432 2334455555555555555555555555555542 2344555555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 482 FCRQ-KKMKESEKFFQEAITAGLFPT-KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLD 559 (675)
Q Consensus 482 ~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 559 (675)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 555555555555555211121 3445555555555555555555555555432 123445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 560 EACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
+|...++++++.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555555542210123333444444555555555555555543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=6.8e-14 Score=144.01 Aligned_cols=271 Identities=14% Similarity=0.071 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQAD---KITYTILLSEHLKQAETKQALGLFCRMVKA----GLNP-DIH 473 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~ 473 (675)
...+......+...|++++|...|+++.+...... ...+..+...+...|++++|...+++..+. +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444444555555555555555555554321110 134445555555555555555555544322 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHHcCC--------------------HHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGL-FPT----KETYTSMICGYLRDGN--------------------ISSAVK 528 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 528 (675)
++..+...+...|++++|...++++.+... .++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 566677777777777777777776664310 011 3467778888888888 899998
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 044815 529 YFQRMNQI----GCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGI-SPC----EVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 529 ~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
.+++..+. +..|. ..++..+...+...|++++|...++++++... .++ ...+..++..|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88876542 11121 34688888999999999999999999886310 112 1366778999999999999999
Q ss_pred HHHHHhh----CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-C----HHHHHHHHHHHHhcCchhHHHH
Q 044815 599 ILESLDK----KLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-D----RVSLAALKNACYESNKYALFSD 665 (675)
Q Consensus 599 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~ 665 (675)
.+++... .++ ..++..++..+...|++++|...++++++..+.. + ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998654 122 4567889999999999999999999988764321 2 5688899999999999999999
Q ss_pred HHHHHHh
Q 044815 666 LSQRIAE 672 (675)
Q Consensus 666 ~~~~~~~ 672 (675)
.++++++
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=9.7e-11 Score=125.90 Aligned_cols=448 Identities=11% Similarity=0.024 Sum_probs=284.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---HHHH
Q 044815 166 IGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADASSYKLMVVAYCRMGR---VTEA 242 (675)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A 242 (675)
.....+.+..|++.+..+ +.|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|+ ++.+
T Consensus 45 ~~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp -CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 334556676777777776 689999999999999999999999999999986 56788899999998888898 9999
Q ss_pred HHHHHHHhHCC-CCCCHHHHHHHHHHHHhcCCC--C---CHHHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHH------
Q 044815 243 DRWLSAMLDRG-AILDNATLTLLITAFCDKGFR--G---SIKQAFELLEEMVR-KGW-KPN-VYTHTVLIDGLC------ 307 (675)
Q Consensus 243 ~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~--~---~~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~------ 307 (675)
..+|++.+... ..|+...|...+.-..+.+.. + ..+.+.++|+.... .|. .++ ...|...+....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999998864 147888888888776665321 0 12344577777554 465 554 457777776544
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 308 ---KKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFE 384 (675)
Q Consensus 308 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 384 (675)
..++++.+.++|++.+... ...-..+|..... +.+.-+...+.+++.+. ..+++
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~ 259 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYM 259 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHH
Confidence 2445788999999887421 1111223332211 11110111111221111 11233
Q ss_pred HHHHHHHHHhh--cCC----C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCC
Q 044815 385 RAYDLMDLMGK--EGC----T-----------P-----N---IYAYNAIIDGLCKKG-------RVQEAYELLKKAFQRE 432 (675)
Q Consensus 385 ~A~~~~~~m~~--~g~----~-----------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~ 432 (675)
.|...+.++.+ .++ + | + ...|...+..--..+ ..+.+..+|++.+..
T Consensus 260 ~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~- 338 (679)
T 4e6h_A 260 NARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH- 338 (679)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-
Confidence 33333333211 011 0 0 0 123444443322221 123345667777765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------
Q 044815 433 LQADKITYTILLSEHLKQAETKQAL-GLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-------- 503 (675)
Q Consensus 433 ~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------- 503 (675)
++.....|...+..+...|+.++|. .++++.... ++.+...+..++...-+.|+++.|.++|+++++...
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3457777888888777888888886 888888764 355666677777777788888888888888775310
Q ss_pred -CCC------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 044815 504 -FPT------------KETYTSMICGYLRDGNISSAVKYFQRMNQI-GCAPDNITYGALISGLCKQ-SKLDEACQFYESM 568 (675)
Q Consensus 504 -~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 568 (675)
.|+ ..+|...+....+.|..+.|..+|.+..+. + ......|...+..-.+. ++++.|..+|+..
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 132 235777777777788888888888888764 2 11233343333333333 4588888888888
Q ss_pred HhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC
Q 044815 569 IGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 569 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 642 (675)
++. .| +...+...+......|+.+.|..+|++.... + ....|..++..-.+.|+.+.+..+.+++.+..|+.
T Consensus 497 Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 497 LKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 874 23 3344456666677788888888888887653 2 23567888887888888888888888888888764
Q ss_pred C
Q 044815 643 D 643 (675)
Q Consensus 643 ~ 643 (675)
+
T Consensus 575 ~ 575 (679)
T 4e6h_A 575 N 575 (679)
T ss_dssp C
T ss_pred c
Confidence 4
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=2.5e-13 Score=131.53 Aligned_cols=217 Identities=10% Similarity=-0.023 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 346 EKMNRAEMLLERMKEQGLL---PNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAY 422 (675)
Q Consensus 346 ~~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 422 (675)
|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555543211 123344455555555555555555555555442 234455555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 044815 423 ELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAG 502 (675)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 502 (675)
..|+++++.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555432 2234445555555555555555555555555432 222222222233344455555555555544432
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 503 LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-----NITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 503 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
. ++...+ .++..+...++.++|...+++..+.. |+ ...+..+...+...|++++|...|+++++
T Consensus 175 ~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 D-KEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp C-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 222222 24444445555555555555544321 11 23445555555555555555555555555
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=9.2e-14 Score=138.75 Aligned_cols=269 Identities=14% Similarity=0.067 Sum_probs=156.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGCTPN----IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
.....+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++..+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 34444555556666666665555542 112 2344455555555555555555555543210
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHHcC
Q 044815 448 LKQAETKQALGLFCRMVKAGLN-PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-FPT----KETYTSMICGYLRDG 521 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g 521 (675)
...+.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 000101 1123444555555555566665555555443210 011 225555566666666
Q ss_pred C--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 044815 522 N--------------------ISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKLDEACQFYESMIGK----G 572 (675)
Q Consensus 522 ~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g 572 (675)
+ +++|...+++..+. +..+ ...++..+...+...|++++|...++++++. +
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 6 66666666654331 1111 1235666777777888888888888877652 1
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-
Q 044815 573 ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK----KLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV- 642 (675)
Q Consensus 573 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 642 (675)
..+ ....+..++..|...|++++|...+++... .++ ...+..++..+...|++++|..+++++++..+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 111 112556677788888888888888877543 111 4456778888888888888888888877653221
Q ss_pred C----HHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 643 D----RVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 643 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+ ..++..++.++...|++++|.+.++++++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 44777888888999999999999888876
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1.2e-13 Score=142.50 Aligned_cols=277 Identities=11% Similarity=0.027 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC-CCCH
Q 044815 332 VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNT----NTYTSLIYGHCKVGNFERAYDLMDLMGKE----GC-TPNI 402 (675)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~ 402 (675)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+...|...|++++|...+++..+. +. +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445666778889999999999999999986332 33 47888899999999999999999988653 11 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRE-----LQADKITYTILLSEHLKQAE-----------------TKQALGLF 460 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 460 (675)
.++..+...|...|++++|...++++.+.. ......++..+...+...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678889999999999999999999987541 12234577888889999999 77777777
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044815 461 CRMVKA----GLN-PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-PTKETYTSMICGYLRDGNISSAVKYFQRMN 534 (675)
Q Consensus 461 ~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 534 (675)
++..+. +.. ....++..+...+...|++++|...+++..+.... .+..
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------- 260 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA-------------------------- 260 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH--------------------------
Confidence 665432 100 01223444444445555555555555444432100 0000
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---
Q 044815 535 QIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG----ISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK--- 606 (675)
Q Consensus 535 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 606 (675)
....++..+...|...|++++|...++++++.. ..+ ...++..++..|...|++++|...+++....
T Consensus 261 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 261 -----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp -----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 001245555556666666666666666655411 000 1234455666666667776666666664331
Q ss_pred -C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 607 -L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 607 -~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
+ ....+..++..|.+.|++++|..+++++++...
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1 123556677777777777777777777766543
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=8.9e-13 Score=119.03 Aligned_cols=163 Identities=9% Similarity=-0.012 Sum_probs=74.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYE 586 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 586 (675)
..+|..+...|...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...++.+...... +...+..++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3344444444444444444444444444421 112334444444444444444444444444442111 12333334444
Q ss_pred HHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 044815 587 YCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
+...++++.|...+++... +.+...+..++..+.+.|++++|++.|+++++.+|. +..+|..++.+|.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 4444444444444444332 223344444555555555555555555555555554 4455555555555555555555
Q ss_pred HHHHHHHh
Q 044815 665 DLSQRIAE 672 (675)
Q Consensus 665 ~~~~~~~~ 672 (675)
+.++++++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=2.4e-13 Score=142.47 Aligned_cols=210 Identities=11% Similarity=0.036 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 453 TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKM-KESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 453 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
+++++..++...... +.+...+..+...+...|++ ++|.+.|+++++... .+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 34666777777777777777 777777777776542 346677777777778888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc--------CCH
Q 044815 532 RMNQIGCAPDNITYGALISGLCKQ---------SKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ--------GDS 593 (675)
Q Consensus 532 ~m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--------g~~ 593 (675)
+..+. .|+...+..+...+... |++++|+..|+++++ +.|+ ...+..++.+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 77763 46667777777777777 888888888888877 3343 45667777777777 778
Q ss_pred HHHHHHHHHHhh--C---CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 594 ATAMIILESLDK--K---LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 594 ~~A~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
++|++.|++..+ + .+...|..++.+|...|++++|++.|+++++.+|. +...+..++.++...|++++|.+.++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888887655 2 35667888888888888888888888888888887 77888888888888888888887554
Q ss_pred H
Q 044815 669 R 669 (675)
Q Consensus 669 ~ 669 (675)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 4
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.3e-12 Score=133.37 Aligned_cols=228 Identities=12% Similarity=-0.006 Sum_probs=150.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhHHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKA----GLNP-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-P-----TKETYT 511 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 511 (675)
....+...|++++|+..+++..+. +-.+ ...++..+...+...|++++|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666666543 1011 2345666777777777777777777766643100 1 134667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGC-APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTRV 581 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 581 (675)
.+...|...|++++|...+++..+... .++ ..++..+..+|...|++++|...+++.++. +..|. ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888888877664210 112 236777888888888888888888888762 22132 35667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhC----CC---hhhHHHHHHHHHccCC---HHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 582 TLAYEYCKQGDSATAMIILESLDKK----LW---IRTVNTLIRKLCSEKR---VGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
.++..|.+.|++++|...+++...- ++ ...+..+...+...|+ +++|+.++++. .. .......+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~-~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-ML-YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TC-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cC-HHHHHHHHHHHH
Confidence 7888888888888888888875431 12 2235667777888888 78888888775 11 111344677888
Q ss_pred HHHHhcCchhHHHHHHHHHHh
Q 044815 652 NACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 652 ~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+|...|++++|.+.++++++
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999988865
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=6e-13 Score=132.79 Aligned_cols=281 Identities=13% Similarity=0.063 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CCH
Q 044815 332 VHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPN----TNTYTSLIYGHCKVGNFERAYDLMDLMGKE----GCT-PNI 402 (675)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~ 402 (675)
...+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566677888999999999999999986322 3 367888899999999999999999987543 211 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHH
Q 044815 403 YAYNAIIDGLCKKGRVQEAYELLKKAFQRELQ-AD----KITYTILLSEHLKQAE-------------TKQALGLFCRMV 464 (675)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~-------------~~~A~~~~~~m~ 464 (675)
.++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ .+++...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----- 158 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA----- 158 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-----
Confidence 56777788888888888888888876542100 11 1244444444554454 0000000
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 044815 465 KAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA----G-LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGC- 538 (675)
Q Consensus 465 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 538 (675)
+++|.+.+++..+. + .......+..+...+...|++++|...+++..+...
T Consensus 159 -----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 159 -----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 44444444433221 0 001133566666677777777777777776654210
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---
Q 044815 539 APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK--- 606 (675)
Q Consensus 539 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 606 (675)
.++ ..++..+...+...|++++|...+++.++. +..+. ..++..++..|...|++++|...+++....
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 011 236777778888888888888888887652 11111 345667888888999999999888876441
Q ss_pred -CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 607 -LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 607 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+ ..++..++..|.+.|++++|..+++++++....
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 346778899999999999999999999877543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=2.9e-12 Score=130.75 Aligned_cols=231 Identities=13% Similarity=0.028 Sum_probs=165.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC----CCHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQR----ELQA-DKITYTILLSEHLKQAETKQALGLFCRMVKAG--LN----PDIHAYT 476 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~----p~~~~~~ 476 (675)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|+..+++..+.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566777777777777777653 1111 23466777777777788888877777766531 11 1245678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITAGLF-PT----KETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYG 546 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~ 546 (675)
.+...|...|++++|...|+++.+.... ++ ..++..+...|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888888999999999998887753111 11 247888899999999999999999988762 2223 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhhCC-ChhhHHHHHHH
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGKGI---SPC-EVTRVTLAYEYCKQGD---SATAMIILESLDKKL-WIRTVNTLIRK 618 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 618 (675)
.+...+.+.|++++|...+++.++... .|. ...+..++..|...|+ .++|+.++++....+ ....+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999999876210 121 1234567888888998 788888888774433 23467789999
Q ss_pred HHccCCHHHHHHHHHHHhcC
Q 044815 619 LCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~ 638 (675)
|.+.|++++|..+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=2.2e-13 Score=134.43 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQR-------ELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHA 474 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 474 (675)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 445555666666666666666666665542 1122233444444555555555555555544443200
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHH
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI------GCAP-DNITYGA 547 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ 547 (675)
.............+..+...|...|++++|...++++.+. +..| ....+..
T Consensus 101 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 101 ----------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 0000000112234444455555555555555555544432 1111 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----------C-C-
Q 044815 548 LISGLCKQSKLDEACQFYESMIGK------GISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK----------L-W- 608 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~-~- 608 (675)
+...+...|++++|..+++++++. +..|. ..++..++..|.+.|++++|.+.++++... + .
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555666666666666655542 11221 123445555666666666666666554321 0 0
Q ss_pred -----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 609 -----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 609 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...+..+...+...+.+.+|...++++....+. +..++..++.+|.+.|++++|.++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112233334444566667777777777766665 677888889999999999999999888875
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=5.1e-11 Score=117.30 Aligned_cols=217 Identities=7% Similarity=-0.010 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 419 QEAYELLKKAFQRELQADKITYTILLSEHLK-------QAET-------KQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
++|..+|++++... +.+...|..++..+.. .|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 3455555555555542 3553 5666666666552112244455666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPT-KE-TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLC-KQSKLDEA 561 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 561 (675)
.|++++|..+|+++++.. |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666532 22 22 55666666666666666666666665532 122333332222211 24666666
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----C--ChhhHHHHHHHHHccCCHHHHHHHHHH
Q 044815 562 CQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK----L--WIRTVNTLIRKLCSEKRVGMAALFFHK 634 (675)
Q Consensus 562 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (675)
..+|+++++. .| +...+..++..+.+.|+.++|..+|++.... | ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666552 23 2344455555555666666666666665441 1 233455555555566666666666666
Q ss_pred HhcCCCC
Q 044815 635 LLGKDQN 641 (675)
Q Consensus 635 ~~~~~~~ 641 (675)
+++..|.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 6655553
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=1.7e-11 Score=110.53 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
+..+|..+...+.+.|++++|.+.|++.++..+ -+...+..+..+|.+.|++++|+..+++..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 566788888888888888888888888887653 367778888888888888888888888887643 334667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
.+...++++.|...+++..+. .|+ ...+..++..|.+.|++++|++.|++..+ +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888873 343 45667788888899999999998888655 3467788899999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 044815 628 AALFFHKLLGKDQN 641 (675)
Q Consensus 628 A~~~~~~~~~~~~~ 641 (675)
|+..|+++++.+|+
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999988764
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=2.6e-12 Score=139.84 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=135.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLA 584 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 584 (675)
...|+.|...|.+.|++++|+..|++..+. .|+ ..+|..+..+|.+.|++++|+..|+++++ +.|+ ...+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 567888888888888888888888888774 454 67788888888888888888888888888 4554 46778888
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhH
Q 044815 585 YEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYAL 662 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 662 (675)
.+|.+.|++++|++.|++..+ +.+...|+.++.+|.+.|++++|++.|+++++.+|+ +...+..++.++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888655 346778899999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHHh
Q 044815 663 FSDLSQRIAE 672 (675)
Q Consensus 663 A~~~~~~~~~ 672 (675)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=6.6e-12 Score=131.44 Aligned_cols=207 Identities=12% Similarity=0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 383 FERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRV-QEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFC 461 (675)
Q Consensus 383 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 461 (675)
++++...+++..... +.+...+..+...+...|++ ++|.+.|+++++.. +.+...|..+...|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444332 23455555555555555555 55555555555442 2234455555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc--------CCHH
Q 044815 462 RMVKAGLNPDIHAYTTLIAAFCRQ---------KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRD--------GNIS 524 (675)
Q Consensus 462 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 524 (675)
+..+. .|+...+..+...+... |++++|...|+++.+... .+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55543 23344455555555554 555555555555544321 2344444444444444 4445
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAP----DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMI 598 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 598 (675)
+|+..|++..+. .| +...|..+..+|...|++++|...|+++++ +.|+ ...+..+..++...|++++|++
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444442 22 344444444444444444444444444444 2222 2233344444444444444443
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=2.8e-11 Score=123.07 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=141.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----CHhHHHH
Q 044815 444 LSEHLKQAETKQALGLFCRMVKAGL-NPD----IHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-FP-----TKETYTS 512 (675)
Q Consensus 444 i~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~-----~~~~~~~ 512 (675)
...+...|++++|+..+++..+... .++ ..++..+...|...|+++.|...+.+..+... .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345556666666666666554310 111 34566666677777777777777776654210 01 1345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKLDEACQFYESMIG-----KGISPCEVTRVT 582 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 582 (675)
+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++.++ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 777777777777777777766542 1111 123566777778888888888888887776 3222 2456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC------C-ChhhHHHHHHHHHccCC---HHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 583 LAYEYCKQGDSATAMIILESLDKK------L-WIRTVNTLIRKLCSEKR---VGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
++..|.+.|++++|...+++...- + ....+..+...+...|+ +++|+.++++.. ........+..++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~ 344 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHH
Confidence 788888888888888888876541 1 12234556666667777 777777777621 11112346667888
Q ss_pred HHHhcCchhHHHHHHHHHHh
Q 044815 653 ACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 653 ~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|...|++++|.+.++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888765
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=1.7e-10 Score=113.45 Aligned_cols=162 Identities=13% Similarity=0.082 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 439 TYTILLSEHLKQAETKQALGLFCRMVKAGLNPD-IH-AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 439 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
.|..++..+...|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++... .+...|...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3444444444444444444444444432 121 11 444444444444455555555544444321 122233222222
Q ss_pred HH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCC
Q 044815 517 YL-RDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG-ISPC--EVTRVTLAYEYCKQGD 592 (675)
Q Consensus 517 ~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~ 592 (675)
.. ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|+++++.. +.|+ ...+..++..+.+.|+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 11 1355555555555554421 1134445555555555555555555555555531 2331 2334444455555555
Q ss_pred HHHHHHHHHHHh
Q 044815 593 SATAMIILESLD 604 (675)
Q Consensus 593 ~~~A~~~~~~~~ 604 (675)
.++|..+++++.
T Consensus 257 ~~~a~~~~~~a~ 268 (308)
T 2ond_A 257 LASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.8e-12 Score=127.93 Aligned_cols=247 Identities=15% Similarity=0.082 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 044815 366 NTNTYTSLIYGHCKVGNFERAYDLMDLMGKE-------GCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR------E 432 (675)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 432 (675)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888999999999999999999998873 22344677889999999999999999999988753 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 044815 433 -LQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYT 511 (675)
Q Consensus 433 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 511 (675)
......++..+...+...|++++|...++++.+... .............+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHH
Confidence 122234555566666666666666666665544200 000000001123344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQI------GCAPD-NITYGALISGLCKQSKLDEACQFYESMIGK-------GISPCE 577 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~ 577 (675)
.+...+...|++++|+.+++++.+. +..|+ ..++..+..++...|++++|...++++++. ...+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4444555555555555555554432 11121 234555566666666666666666666541 011111
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 578 -------VTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 578 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
..+..+...+...+.+.+|...++..... ....++..++..|.+.|++++|.++|+++++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11122233344455666666666665542 2455678888889999999999999998876543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=1e-10 Score=118.76 Aligned_cols=268 Identities=15% Similarity=0.027 Sum_probs=161.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHH
Q 044815 372 SLIYGHCKVGNFERAYDLMDLMGKEGCTPNIY----AYNAIIDGLCKKGRVQEAYELLKKAFQRELQ-ADK----ITYTI 442 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 442 (675)
.....+...|++++|...+++.....-..+.. +++.+...+...|++++|...+++....... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567788888888888876653222222 4556667777788888888888877643111 111 23455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHhHHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKA----GLN--P-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP----TKETYT 511 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~ 511 (675)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666777788888888877776543 211 2 23455566777777788888888887776542211 124566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQIGCAPD--NITYG----ALISGLCKQSKLDEACQFYESMIGKGISPC---EVTRVT 582 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ 582 (675)
.+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++..+....+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 667777777888888887777654311111 11111 222336677788888777777765322111 123455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhC----C---C-hhhHHHHHHHHHccCCHHHHHHHHHHHhcCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDKK----L---W-IRTVNTLIRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~~----~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
++..+...|++++|...+++.... + . ...+..+..++...|+.++|...+++++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 667777777777777777765431 1 1 1244555666777777777777777766553
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=5.6e-11 Score=120.87 Aligned_cols=231 Identities=14% Similarity=0.028 Sum_probs=152.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQREL-QA----DKITYTILLSEHLKQAETKQALGLFCRMVKAG--L---NP-DIHAYT 476 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~---~p-~~~~~~ 476 (675)
....+...|++++|...|+++.+... .+ ...++..+...+...|++++|+..+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44455667777777777777664311 11 23456666777777777777777776665421 0 11 244667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 044815 477 TLIAAFCRQKKMKESEKFFQEAITA----GLF-PTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAPDNITYGA 547 (675)
Q Consensus 477 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ 547 (675)
.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|+..+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7778888888888888888777653 110 11346777888888888888888888887651 11222567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---CCCH-HHHHHHHHHHHHcCC---HHHHHHHHHHHhhCC-ChhhHHHHHHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGI---SPCE-VTRVTLAYEYCKQGD---SATAMIILESLDKKL-WIRTVNTLIRKL 619 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 619 (675)
+...+.+.|++++|...+++.++... .|.. ..+..+...|...|+ .++|+.++++....+ ....+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 88888889999999999888876311 1222 334455666777777 777777777643322 233566788888
Q ss_pred HccCCHHHHHHHHHHHhcC
Q 044815 620 CSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~ 638 (675)
.+.|++++|..+|+++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=4.4e-11 Score=107.60 Aligned_cols=161 Identities=16% Similarity=0.059 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYC 588 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 588 (675)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..++..|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44455555666666666666666655432 22455566666666666666666666666665321 13345555666666
Q ss_pred HcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 044815 589 KQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDL 666 (675)
Q Consensus 589 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 666 (675)
..|++++|.+.++++.. +.+...+..++..+...|++++|...++++++..+. +...+..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666544 234556666677777777777777777777776665 666777777777777777777777
Q ss_pred HHHHHh
Q 044815 667 SQRIAE 672 (675)
Q Consensus 667 ~~~~~~ 672 (675)
++++++
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=3.6e-10 Score=105.76 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 044815 436 DKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMIC 515 (675)
Q Consensus 436 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 515 (675)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.|++..+... .+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 34555556666666666666666666666654325555665666667777777777777777766542 24556666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 044815 516 GYLRDGNISSAVKYFQRMNQIGCAPD-N-------ITYGALISGLCKQSKLDEACQFYESMIGKGISPC---EVTRVTLA 584 (675)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 584 (675)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|+++++ +.|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 777777777777777777663 233 3 3466677777788888888888888877 4565 24556677
Q ss_pred HHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 585 YEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
..|...|+ ..++++..- .+...+... .....+.+++|+..++++++..|. +..+...+..+
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 77765543 233333332 122223222 233456789999999999999998 77777666554
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=6.5e-10 Score=112.74 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHH
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAFQR----ELQ--A-DKITYTILLSEHLKQAETKQALGLFCRMVKAGLN----PDIH 473 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~ 473 (675)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344455555556666666555554432 111 1 1233444555566666666666666655543211 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK-ETYT-----SMICGYLRDGNISSAVKYFQRMNQIGCAP---DNIT 544 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~ 544 (675)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5666667777777777777777776643111111 1111 22334667888888888887776532111 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHH
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGK----GISPCE-VTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKL 619 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 619 (675)
+..+...+...|++++|...++++.+. |..++. ..+..++.++...|+.++|...+++....... ...+..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~---~g~~~~~ 332 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR---TGFISHF 332 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---ccHHHHH
Confidence 566777788888888888888887642 222222 24556777888889999998888876541100 1122333
Q ss_pred HccCCHHHHHHHHHHHhcCCCC
Q 044815 620 CSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
...| +....+++++....+.
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCS
T ss_pred HHcc--HHHHHHHHHHHhCCCC
Confidence 3444 4555666666666554
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.1e-10 Score=107.41 Aligned_cols=191 Identities=9% Similarity=-0.040 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGAL 548 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 548 (675)
.++..+......+...|++++|...|+++++....++...+..+..++...|++++|+..+++..+. .|+ ...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4567788888888899999999999998888764467777777888888999999999999988874 454 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C---ChhhHHHHH
Q 044815 549 ISGLCKQSKLDEACQFYESMIGKGISPCE--------VTRVTLAYEYCKQGDSATAMIILESLDKK-L---WIRTVNTLI 616 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~ 616 (675)
..++...|++++|...+++.++ +.|+. ..+..++..+...|++++|++.++++.+. | +...|..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 8888899999999999999887 44442 34666778888888888888888887653 2 345677777
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+|...| ...++++...+.. +...+... .....+.+++|...++++++
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 7775443 4455666666655 44444433 34556778999999999876
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=2.6e-09 Score=101.80 Aligned_cols=246 Identities=15% Similarity=0.054 Sum_probs=160.0
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQA 456 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 456 (675)
..-.|.+..++.-...+.. ......-..+.++|...|+++.. ....|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 3445777777663222211 12223333455777777776531 11233433444333333 222 6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044815 457 LGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGL-FPTKETYTSMICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 457 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
+..+++..+.+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654 45666667888888888999999999988877653 23567778888899999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 044815 536 IGCAP-----DNITYGALISGL--CK--QSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK- 605 (675)
Q Consensus 536 ~~~~p-----~~~~~~~l~~~~--~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 605 (675)
. .| +..+...++.++ .. .+++++|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 56 345555566553 22 33889999999998773 35423333344488889999999999887654
Q ss_pred -----------CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 606 -----------KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 606 -----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
+.++.++..+|......|+ +|.++++++.+..|+ ++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-hp~i~ 290 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-HAFIK 290 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-CHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-ChHHH
Confidence 3456666555555555676 888999999999887 65544
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=6.5e-11 Score=114.66 Aligned_cols=225 Identities=16% Similarity=0.100 Sum_probs=158.4
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhHHHHH
Q 044815 448 LKQAETKQALGLFCRMVKA-------GLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA------GL-FPTKETYTSM 513 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 513 (675)
...|++++|+..+++..+. ..+....++..+...+...|++++|...++++.+. +- .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22334667889999999999999999999998864 11 1235678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHH
Q 044815 514 ICGYLRDGNISSAVKYFQRMNQI------GCAP-DNITYGALISGLCKQSKLDEACQFYESMIGK------GISPC-EVT 579 (675)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~-~~~ 579 (675)
...|...|++++|...+++..+. ...| ...++..+...+...|++++|..+++++++. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999864 1123 2567888999999999999999999999874 11332 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC-----------CChhhHHHHHHHHHccC------CHHHHHHHHHHHhcCCCCC
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDKK-----------LWIRTVNTLIRKLCSEK------RVGMAALFFHKLLGKDQNV 642 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~p 642 (675)
+..++..|.+.|++++|...++++... .....|..+...+...+ .+.++...++......+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT- 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-
Confidence 678999999999999999999987541 12233444444444333 344444444443333333
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 643 DRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 643 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
...++..++.+|...|++++|.++++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999863
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=1.6e-10 Score=112.61 Aligned_cols=173 Identities=13% Similarity=0.037 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKA----GLNPD-IHAYTTLIAAFCRQKKMKES 491 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 491 (675)
++++|...|++. ...|...|++++|...|++..+. +-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455566666666666655442 11111 34555666666666666666
Q ss_pred HHHHHHHHHCCCCC-C----HhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 044815 492 EKFFQEAITAGLFP-T----KETYTSMICGYLRD-GNISSAVKYFQRMNQIGCA-PD----NITYGALISGLCKQSKLDE 560 (675)
Q Consensus 492 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~ 560 (675)
...+++.++..... + ..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 66666555431100 0 22444445555553 5555555555554442100 00 1234444445555555555
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 561 ACQFYESMIGKGISPCE------VTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 561 A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
|+..|+++++....... ..+..++.++...|++++|...+++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555442211110 023334444444555555555554443
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=2.3e-10 Score=124.63 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 044815 437 KITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICG 516 (675)
Q Consensus 437 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 516 (675)
...|+.+...+.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|...|+++++... -+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555555555555555555555555442 22344555555555555555555555555554321 134455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSA 594 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 594 (675)
|.+.|++++|++.|++..+. .|+ ...|..+..+|...|++++|+..|+++++ +.|+ ...+..++.+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 55555555555555555442 232 44455555555555555555555555554 3333 233444555555555555
Q ss_pred HHHHHHHHH
Q 044815 595 TAMIILESL 603 (675)
Q Consensus 595 ~A~~~~~~~ 603 (675)
+|.+.++++
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.8e-09 Score=96.85 Aligned_cols=160 Identities=13% Similarity=0.085 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQK 486 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 486 (675)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 33334444444444444444433321 1233334444444444444444444444444332 223444444445555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYE 566 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 566 (675)
++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++
T Consensus 91 ~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444321 234445555555555555555555555554432 2234455555555555555555555555
Q ss_pred HHHh
Q 044815 567 SMIG 570 (675)
Q Consensus 567 ~~~~ 570 (675)
++++
T Consensus 169 ~~~~ 172 (186)
T 3as5_A 169 KANE 172 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=1.2e-09 Score=106.40 Aligned_cols=174 Identities=10% Similarity=-0.051 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 044815 382 NFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR----ELQAD-KITYTILLSEHLKQAETKQA 456 (675)
Q Consensus 382 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~A 456 (675)
++++|...|.+. ...|...|++++|.+.|++..+. +..++ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367776666554 66677788888888888776643 21111 35677777888888888888
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhHHHHHHHHHHHcCCHHH
Q 044815 457 LGLFCRMVKAGLN-PD----IHAYTTLIAAFCRQ-KKMKESEKFFQEAITAGLFP-T----KETYTSMICGYLRDGNISS 525 (675)
Q Consensus 457 ~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 525 (675)
+..+++..+.... .+ ..++..+...|... |++++|...|++..+..... + ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888777653110 11 34677777777775 88888888888877642111 1 3457777778888888888
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 526 AVKYFQRMNQIGCAPDN------ITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
|+..|++..+....... ..|..+..++...|++++|...|++.++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887764322111 1456667777778888888888888776
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=5.3e-10 Score=108.16 Aligned_cols=206 Identities=15% Similarity=0.040 Sum_probs=131.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 044815 295 NVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS------DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ------G 362 (675)
Q Consensus 295 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g 362 (675)
...++..+...|...|++++|...+.+.++. ...+....++..+...+...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4556777888888888888888888877653 212234556777888888888888888888887653 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 044815 363 L-LPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE------G-CTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQR--- 431 (675)
Q Consensus 363 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 431 (675)
. +....++..+...|...|++++|...++++.+. + .+....++..+...|...|++++|...++++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123556777888888888888888888887654 1 1223567778888888888888888888887753
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 432 ----ELQA-DKITYTILLSEHLKQAE------TKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 432 ----~~~~-~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
...+ ....|..+.......+. +.++...++.... ..+....++..+...|...|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 22233333333333222 2222222221111 1122345778888999999999999999988875
Q ss_pred C
Q 044815 501 A 501 (675)
Q Consensus 501 ~ 501 (675)
.
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 3
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=4.4e-09 Score=100.18 Aligned_cols=240 Identities=9% Similarity=0.004 Sum_probs=169.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 410 DGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK 489 (675)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 489 (675)
+-..-.|.+..++.-..++ ....+.....-+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3344578888887733322 2222333444455777777776532 12244444444444433 322
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..+-.+ +...+...+..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888887665 3566666788899999999999999999987755312 4567888899999999999999999999
Q ss_pred HhCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHhhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 569 IGKGISP-----CEVTRVTLAYE--YCKQG--DSATAMIILESLDKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 569 ~~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
.+ ..| +..+...|+.+ ....| +.++|..+|+++.... +...-..+..++.+.|++++|.+.++.+++.
T Consensus 163 ~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred Hh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88 566 35566666655 44445 8999999999987753 3223333444888999999999999987765
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 639 ----------DQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 639 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+|+ |+.++..++......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 366 78888888888888897 88999988865
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=2.3e-09 Score=102.58 Aligned_cols=185 Identities=15% Similarity=0.134 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT---KETYTSMICGYLRDGNISSAVKYFQRMNQIGC-APD-NIT 544 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~ 544 (675)
.+...+..+...+.+.|++++|...|+++++.... + ...+..+..+|.+.|++++|+..|++..+... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555666666677777777777777777665321 2 45666666777777777777777777766421 112 334
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHH
Q 044815 545 YGALISGLCK--------QSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTL 615 (675)
Q Consensus 545 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 615 (675)
+..+..++.. .|++++|+..|+++++. .|+.. ....+. .+..+.. .....+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~-~~~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRA-KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHH-HHHHHHHHH
Confidence 5556666666 67777777777777662 23321 111110 0000000 001124567
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhc----------CchhHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNV--DRVSLAALKNACYES----------NKYALFSDLSQRIAE 672 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 672 (675)
+..|.+.|++++|+..|+++++..|.. ....+..++.+|... |++++|...++++++
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 888889999999999999998887753 245788888888876 888999999998876
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=5.8e-09 Score=96.05 Aligned_cols=176 Identities=13% Similarity=0.054 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC----CHHHHHHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDG----NISSAVKYF 530 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 530 (675)
+|+..|++..+.| +...+..|...|...+++++|.++|++..+.| +...+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 56666777777777777777777777777654 45666666666665 5 677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 044815 531 QRMNQIGCAPDNITYGALISGLCK----QSKLDEACQFYESMIGKGIS-PCEVTRVTLAYEYCK----QGDSATAMIILE 601 (675)
Q Consensus 531 ~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 601 (675)
++..+.| +...+..+...|.. .+++++|...|++..+.|.. .....+..|+..|.. .++.++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776643 45566666666655 66777777777777765421 014556666777766 666777777777
Q ss_pred HHhhC-CChhhHHHHHHHHHcc-C-----CHHHHHHHHHHHhcCCC
Q 044815 602 SLDKK-LWIRTVNTLIRKLCSE-K-----RVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 602 ~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 640 (675)
+.... ++...+..|+..|... | ++++|+.+|+++.+.|.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76554 4555666666666542 2 67777777777666653
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=6.1e-10 Score=121.95 Aligned_cols=171 Identities=9% Similarity=-0.031 Sum_probs=100.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044815 483 CRQKKMKESEKFFQEAI--------TAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK 554 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 554 (675)
...|++++|.+.++++. +.. ..+...+..+...|...|++++|+..++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44566666666666665 322 1244556666666666666666666666666532 2234566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHH
Q 044815 555 QSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALF 631 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (675)
.|++++|+..|+++++ +.|+ ...+..++.+|.+.|++++ ++.|+++.+ +.+...|..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666666 3342 3455566666666666666 666666543 33455666666666667777777777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 632 FHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 632 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
|+++++.+|. +...+..++.++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 7766666665 56666666666655443
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=9e-10 Score=98.24 Aligned_cols=162 Identities=10% Similarity=-0.010 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYE-Y 587 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~ 587 (675)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+ ..|+......+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHH
Confidence 45566677888889999998888877632 22466788888888889999999998888876 33433333222222 2
Q ss_pred HHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCchhHHH
Q 044815 588 CKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-DRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 588 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
...++..+|...+++... +.+...+..++..+...|++++|+..|+++++.+|.+ +...+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233334457778887654 3467888999999999999999999999999999864 4678999999999999999999
Q ss_pred HHHHHHHhc
Q 044815 665 DLSQRIAEG 673 (675)
Q Consensus 665 ~~~~~~~~~ 673 (675)
..+++++..
T Consensus 165 ~~y~~al~~ 173 (176)
T 2r5s_A 165 SKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=4.4e-09 Score=97.96 Aligned_cols=182 Identities=9% Similarity=0.045 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFP--TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----IT 544 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~ 544 (675)
+...+..+...+.+.|++++|...|+++++..... ....+..+..+|.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 34556667777888899999999999888754221 13567778888889999999999999888743 432 24
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 545 YGALISGLCK------------------QSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 545 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+..+..++.. .|++++|...|+++++. .|+.. ........ + .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHH--
Confidence 4445555543 45677777777777763 34321 11110000 0 000000
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR---VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
......++..|.+.|++++|+..|+++++..|+ +. ..+..++.++.+.|++++|.+.++++.+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 011235677788899999999999999988887 43 5688899999999999999999987765
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=2.9e-09 Score=101.88 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-Hh
Q 044815 434 QADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPD---IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF-PT-KE 508 (675)
Q Consensus 434 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~ 508 (675)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+++++.... |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4566778888899999999999999999999864 223 678889999999999999999999999986421 12 45
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 044815 509 TYTSMICGYLR--------DGNISSAVKYFQRMNQIGCAPDN-ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVT 579 (675)
Q Consensus 509 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 579 (675)
.+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH----HHHH
Confidence 67778888888 99999999999999885 3542 222211 111111110 0123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh-CCC----hhhHHHHHHHHHcc----------CCHHHHHHHHHHHhcCCCCCC-
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK-KLW----IRTVNTLIRKLCSE----------KRVGMAALFFHKLLGKDQNVD- 643 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~- 643 (675)
+..++..|.+.|++++|+..|+++.+ .|+ ...+..++.+|... |++++|+..|+++++..|+..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 56677888888888888888888655 232 34567777777755 889999999999999888722
Q ss_pred -HHHHHHHHHHHHhcCchhHHH
Q 044815 644 -RVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 644 -~~~~~~l~~~~~~~g~~~~A~ 664 (675)
......+..++...++++++.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 235556666666666665544
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=2.3e-07 Score=96.85 Aligned_cols=357 Identities=9% Similarity=-0.015 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHH----hcCCh
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGW-TEKAFRLFLKLVRSDNY-KPNVHTYTAMISGYC----KEEKM 348 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~~~~ 348 (675)
++++.+..+|+..+.. .|++..|...+....+.+. .+....+|+..+..-|. ..+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5688888888877764 4677777777776666553 34556667776665443 235566666665443 23556
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 349 NRAEMLLERMKEQGLLPNT-NTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 349 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
+.+..+|++.+..... +. ..|..... +.+......+..++.+.. +.+..|..++++
T Consensus 106 ~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 7777778777763111 11 12222211 111111122222221111 122333333333
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 428 AFQRELQADKITYTILLSEHLKQA-------ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 428 ~~~~~~~~~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
+...-...+...|...+.--...+ ..+.+..+|++++... +.+...|...+.-+.+.|+.+.|..++++++.
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 322100112334544444322211 0344667777777653 44577777777777788888888888888887
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 501 AGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI---------GCAP---DNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 501 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
. +.+...|.. |....+.++. ++.+.+. +..+ ....|...+..+.+.+..+.|..+|+++
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6 223322222 2221111111 2222111 0001 1245666666666777889999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 569 IGKGISPCEVTRVTLAYEYCKQ-GDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 569 ~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+. ...+...+...+..-... ++.+.|.++|+...+. .++..|...+....+.|+.+.|..+|+++. . ...
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k-~~~ 385 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----K-TSR 385 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----C-BHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----H-HHH
Confidence 32 112334444333333333 3688899999886652 234556667777778889999999998872 2 567
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
.|...+..-...|+.+.+..+++++.+.
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7888887777889988888888888754
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=1.9e-08 Score=92.49 Aligned_cols=171 Identities=14% Similarity=0.081 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 044815 490 ESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS----KLDEACQFY 565 (675)
Q Consensus 490 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 565 (675)
+|.+.|++..+.| +...+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555542 45555556666666666666666666665543 44455555555554 4 566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCC----hhhHHHHHHHHHc----cCCHHHHHHHHH
Q 044815 566 ESMIGKGISPCEVTRVTLAYEYCK----QGDSATAMIILESLDKKLW----IRTVNTLIRKLCS----EKRVGMAALFFH 633 (675)
Q Consensus 566 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~ 633 (675)
++..+.| +...+..|+..|.. .+++++|.++|++.....+ +..+..|+..|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 23455555555555 5566666666666555444 4555666666655 556666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhc-C-----chhHHHHHHHHHHh
Q 044815 634 KLLGKDQNVDRVSLAALKNACYES-N-----KYALFSDLSQRIAE 672 (675)
Q Consensus 634 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~ 672 (675)
++.+.+. +...+..|+.+|... | ++++|.++++++.+
T Consensus 154 ~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 154 GSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 6665521 333555555555432 2 56666666666554
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=5.5e-09 Score=87.96 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK 589 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 589 (675)
|..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+ |
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--C--------------
Confidence 4445555555555555555555554432 1234444445555555555555555555554422 1
Q ss_pred cCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 590 QGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
.+...+..++..+...|++++|...++++++..+. +..++..++.++...|++++|.+.+++
T Consensus 67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 22334444555555555555555555555555444 445555555555555555555555555
Q ss_pred HHh
Q 044815 670 IAE 672 (675)
Q Consensus 670 ~~~ 672 (675)
+++
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=3e-09 Score=103.17 Aligned_cols=164 Identities=11% Similarity=0.017 Sum_probs=121.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR-VTL 583 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l 583 (675)
+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++.+ ..|+.... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 4455666777777888888888888887764 34 456777777888888888888888888766 34554333 223
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCch
Q 044815 584 AYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNV-DRVSLAALKNACYESNKY 660 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 660 (675)
...+.+.|+.++|...+++... +.+...+..++..|...|++++|+..|+++++.+|.. +...+..++.++...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3446677777778877777544 4467778888888888999999999999988888762 267888889999999999
Q ss_pred hHHHHHHHHHHhc
Q 044815 661 ALFSDLSQRIAEG 673 (675)
Q Consensus 661 ~~A~~~~~~~~~~ 673 (675)
++|...+++.+..
T Consensus 272 ~~a~~~~r~al~~ 284 (287)
T 3qou_A 272 DALASXYRRQLYA 284 (287)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9998888887753
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=1.3e-06 Score=91.05 Aligned_cols=105 Identities=9% Similarity=-0.014 Sum_probs=76.6
Q ss_pred hCC-ChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhh-CCC-C
Q 044815 145 SNG-NFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGL-VEYAEEVFDEMCA-RGV-C 220 (675)
Q Consensus 145 ~~~-~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~-~~~-~ 220 (675)
+.| +++.|+.+|+..+..|-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.... .|. .
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~ 82 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCT
T ss_pred HcCcchHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCc
Confidence 345 488899999999988866 8899999999999885 3688899988888777763 4667788888775 342 3
Q ss_pred CCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhHC
Q 044815 221 ADASSYKLMVVAYC----RMGRVTEADRWLSAMLDR 252 (675)
Q Consensus 221 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~ 252 (675)
.+...|...+..+. .+++.+.+..+|++.+..
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 46788887776543 346788899999998874
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=8.2e-08 Score=92.55 Aligned_cols=228 Identities=7% Similarity=-0.041 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 044815 417 RVQEAYELLKKAFQRELQADKITYTILLSEHLKQA--ETKQALGLFCRMVKAGLNPDIHAYTTLIAAF----CRQ---KK 487 (675)
Q Consensus 417 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~ 487 (675)
..++|++++++++..+ +-+...|+.-...+...+ ++++++.+++.+.... +-+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457777777777653 334555666666676766 7777777777777654 33444555444444 444 66
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNIS--SAVKYFQRMNQIGCAPDNITYGALISGLCKQSK------LD 559 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~ 559 (675)
++++..+++.+.+... .+..+|+.-...+.+.|.++ +++++++++.+.. .-|...|+.-...+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 7777777777776543 46667776666666677766 7777777777643 2355566665555555555 67
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhh-----CCChhhHHHHHHHHHccCCHHHHHHHHH
Q 044815 560 EACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSAT-AMIILESLDK-----KLWIRTVNTLIRKLCSEKRVGMAALFFH 633 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 633 (675)
++++.+++++..... |...++.+...+.+.|+..+ +..+.+++.. ..+...+..++.+|.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777763221 34555666666666666433 4445555432 2345566667777777777777777777
Q ss_pred HHhc-CCCCCCHHHHHHH
Q 044815 634 KLLG-KDQNVDRVSLAAL 650 (675)
Q Consensus 634 ~~~~-~~~~p~~~~~~~l 650 (675)
.+.+ .+|- ....|...
T Consensus 283 ~l~~~~Dpi-r~~yW~~~ 299 (306)
T 3dra_A 283 LLKSKYNPI-RSNFWDYQ 299 (306)
T ss_dssp HHHHTTCGG-GHHHHHHH
T ss_pred HHHhccChH-HHHHHHHH
Confidence 7665 4554 55555443
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=3.1e-10 Score=98.10 Aligned_cols=142 Identities=8% Similarity=-0.020 Sum_probs=106.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ 590 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 590 (675)
|...+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++++ +.|+ ...+..++.+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 334455667788888888877652 333 33556677888888888888888888888 4454 46777888888888
Q ss_pred CCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 591 GDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALF-FHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 591 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
|++++|+..|++..+ +.+...|..++..|.+.|++++|.+. ++++++.+|. ++.+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888888888655 34677888899999999998776654 5899999998 88888888888877775
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=1.2e-08 Score=100.11 Aligned_cols=130 Identities=9% Similarity=-0.021 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIG--C-APD--NITYGALISGLCKQSKLDEACQFYESMIGK----GISP-CEV 578 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~ 578 (675)
+|+.+...|...|++++|+..+++..+.- . .+. ..++..+...|.. |++++|+..|++.++. |..+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 44444555555555555555555543310 0 111 2345555555655 6666666666666541 1000 023
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDKK----LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 640 (675)
++..++..|.+.|++++|+..|++.... +. ...+..++.++...|++++|+..|++++ ..|
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 4455666666666666666666665431 11 1234455555666677777777777766 544
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=4.9e-09 Score=96.24 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTS----------------MICGYLRDGNISSAVKYFQRMNQ 535 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~ 535 (675)
...+......+...|++++|...|+++++..+ -+...|.. +..+|.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566778899999999999999998642 23556666 88999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC--HHHHHHHHHHHhhCC-Chhh
Q 044815 536 IGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGD--SATAMIILESLDKKL-WIRT 611 (675)
Q Consensus 536 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~-~~~~ 611 (675)
.. +-+...+..+..++...|++++|+..|+++++ +.|+ ...+..++..|...|+ .+.+...++.+..++ ....
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 159 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHH
Confidence 53 23577899999999999999999999999998 5564 4677888888876654 345566666665432 2224
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+...+.++...|++++|+..|+++++..|.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 455677777899999999999999988875
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.9e-08 Score=84.52 Aligned_cols=129 Identities=21% Similarity=0.344 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044815 473 HAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGL 552 (675)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 552 (675)
..+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3577888999999999999999999988653 467888899999999999999999999998754 34577888888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 553 CKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
...|++++|...++++.+... .+...+..++..|.+.|++++|...++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999999999887431 134455555666666666666666655543
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=7.7e-09 Score=111.25 Aligned_cols=162 Identities=10% Similarity=-0.018 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
.|++++|.+.++++.+... .+...|..+...|...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887643 357888899999999999999999999998753 23477888899999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc---CCHHHHHHHHHHHhcC
Q 044815 565 YESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE---KRVGMAALFFHKLLGK 638 (675)
Q Consensus 565 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 638 (675)
+++.++. .|+ ...+..++.+|.+.|++++|.+.+++..+ +.+...+..++..+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999884 443 56778899999999999999999998765 34677788899999988 9999999999999999
Q ss_pred CCCCCHHHHHHHH
Q 044815 639 DQNVDRVSLAALK 651 (675)
Q Consensus 639 ~~~p~~~~~~~l~ 651 (675)
++. +...+..++
T Consensus 158 ~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVG-AVEPFAFLS 169 (568)
T ss_dssp TCC-CSCHHHHTT
T ss_pred CCc-ccChHHHhC
Confidence 887 444555444
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=9.9e-10 Score=94.87 Aligned_cols=122 Identities=8% Similarity=-0.039 Sum_probs=103.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR 624 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 624 (675)
|...+...|++++|+..++.... ..|+. ..+..++..|.+.|++++|++.|++..+ +.+..+|..++.+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44455677899999999999876 44433 4567799999999999999999999765 4578899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHH-HHHHHh
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDL-SQRIAE 672 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 672 (675)
+++|+..|+++++.+|. +...+..++.+|.+.|++++|.+. ++++++
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999887765 588765
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=3.5e-08 Score=91.84 Aligned_cols=186 Identities=10% Similarity=0.021 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHH
Q 044815 436 DKITYTILLSEHLKQAETKQALGLFCRMVKAGLN-P-DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTK--ETYT 511 (675)
Q Consensus 436 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 511 (675)
+...+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++++....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3456667788899999999999999999986322 1 1467888999999999999999999999986532111 2455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 512 SMICGYLR------------------DGNISSAVKYFQRMNQIGCAPDNI-TYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 512 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
.+..++.. .|++++|+..|+++.+. .|+.. .+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 55555554 57899999999999884 45532 22211110 0011111
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC-h---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 573 ISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK-LW-I---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 573 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
......++..|.+.|++++|+..|+++.+. |+ . ..+..++.++.+.|++++|++.++++...+|.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 112245778899999999999999997653 32 2 46788999999999999999999999888775
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=7.6e-07 Score=85.80 Aligned_cols=216 Identities=10% Similarity=0.058 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 044815 384 ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKG--RVQEAYELLKKAFQRELQADKITYTILLSEH----LKQ---AETK 454 (675)
Q Consensus 384 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---~~~~ 454 (675)
++|+++++.+...+ +-+..+|+.-...+...| +++++++.++.++..+ +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 34555554444442 223334444444444444 4555555555444432 12233333322222 222 3444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC------HHHH
Q 044815 455 QALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMK--ESEKFFQEAITAGLFPTKETYTSMICGYLRDGN------ISSA 526 (675)
Q Consensus 455 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A 526 (675)
+++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++.++++++++.++ -|...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 5555554444442 224444444444444444444 44444544444432 244444444433333333 4444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDE-ACQFYESMIGKG-I-SPCEVTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
++.+++++... +-|...|+.+...+.+.|+..+ +..+++++.+.+ . ..+...+..++..|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 44444444422 1234444444444444444222 333444333311 0 112233344444444445555555555544
Q ss_pred h
Q 044815 604 D 604 (675)
Q Consensus 604 ~ 604 (675)
.
T Consensus 285 ~ 285 (306)
T 3dra_A 285 K 285 (306)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=5.8e-08 Score=89.03 Aligned_cols=129 Identities=6% Similarity=0.010 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 522 (675)
+...+.+.|++++|+..+++.++.. +-+...+..+..++...|++++|...|+++++..+ .+...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 4555555555555555555555543 23455555555555555555555555555555432 234455555555443332
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 044815 523 --ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE 577 (675)
Q Consensus 523 --~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 577 (675)
.+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPST 190 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCH
Confidence 2233333333321 111112222233344445555555555555555 44443
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=9.3e-09 Score=100.88 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAPD-NITYGALISGLCKQSKLD 559 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~ 559 (675)
.+++++|...|.++ ...|...|++++|...+.+..+. +-.+. ..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35666666666544 33556677777777777765542 10111 347788888999999999
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CC----hhhHHHHHHHHHccCCHH
Q 044815 560 EACQFYESMIGK----GISP-CEVTRVTLAYEYCKQGDSATAMIILESLDKK----LW----IRTVNTLIRKLCSEKRVG 626 (675)
Q Consensus 560 ~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~g~~~ 626 (675)
+|+..|++.++. |-.. ...++..++..|.. |++++|+..+++...- .+ ..++..++..|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999998752 2111 12466778889988 9999999999986541 11 456788999999999999
Q ss_pred HHHHHHHHHhcCCCCC-C----HHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 627 MAALFFHKLLGKDQNV-D----RVSLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 627 ~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
+|+..|+++++..+.. + ..++..++.++...|++++|...+++++
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999998864321 1 2367788888999999999999999986
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=2.2e-08 Score=109.63 Aligned_cols=173 Identities=10% Similarity=-0.034 Sum_probs=113.9
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044815 413 CKKGRVQEAYELLKKAF--------QRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCR 484 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 484 (675)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|+..++++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777777777777776 32 23445566777777777777777777777777653 3356677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 485 QKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
.|++++|.+.|+++.+... .+...|..+..+|.+.|++++ +..|++..+.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777776542 245667777777777777777 77777776642 22456677777777777777777777
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 044815 565 YESMIGKGISPCE-VTRVTLAYEYCKQGD 592 (675)
Q Consensus 565 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 592 (675)
|+++++ +.|+. ..+..++.+|...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 777766 44553 444556666655443
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=1.7e-08 Score=86.60 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
.+..++..+.+.|++++|...|+++.. +.+...|..++.+|...|++++|+..|+++++.+|. ++..|..++.+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 334445555555555555555555433 224444555555555555555555555555555554 44555555555555
Q ss_pred cCchhHHHHHHHHHHh
Q 044815 657 SNKYALFSDLSQRIAE 672 (675)
Q Consensus 657 ~g~~~~A~~~~~~~~~ 672 (675)
.|++++|.+.++++++
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=1.4e-07 Score=91.69 Aligned_cols=160 Identities=8% Similarity=-0.053 Sum_probs=116.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQIGC-APDNI----TYGALISGLCKQSKLDEACQFYESMIGKGIS-PC----EVTRVT 582 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~ 582 (675)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++++.... ++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888889999888888876321 12211 2334566666778889999999988873222 22 235777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh----C-C----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC----CC-HHHHH
Q 044815 583 LAYEYCKQGDSATAMIILESLDK----K-L----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN----VD-RVSLA 648 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~-~~~~~ 648 (675)
++..|...|++++|...++++.+ . . ...++..++..|.+.|++++|+.+++++++..+. +. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999998888663 1 1 2346788999999999999999999988765322 12 67889
Q ss_pred HHHHHHHhcCc-hhHHHHHHHHHHh
Q 044815 649 ALKNACYESNK-YALFSDLSQRIAE 672 (675)
Q Consensus 649 ~l~~~~~~~g~-~~~A~~~~~~~~~ 672 (675)
.++.++.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999998875
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=2.2e-08 Score=83.32 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=87.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 538 CAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 538 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
+.|+ ...+......|.+.|++++|++.|++.++ +.| +...+..++.+|.+.|++++|+..+++..+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444 34667777788888888888888888887 344 346667788888888888888888888655 34677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
.++.++...|++++|++.|+++++.+|. +...+..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHh
Confidence 8899999999999999999999999888 87777776654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=4.2e-08 Score=90.33 Aligned_cols=123 Identities=7% Similarity=-0.067 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 622 (675)
+..+...+...|++++|...|++++ .|+...+..++..|.+.|++++|+..+++... +.+...|..++.++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3444555666666666666666553 34555666666667777777777776666543 33455677777777777
Q ss_pred CCHHHHHHHHHHHhcCCCCCCH----------------HHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 623 KRVGMAALFFHKLLGKDQNVDR----------------VSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
|++++|+..|+++++..+. +. ..+..++.++...|++++|.+.++++++
T Consensus 85 ~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7888888888777776654 33 6788888888888888888888888775
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.5e-08 Score=106.04 Aligned_cols=151 Identities=12% Similarity=-0.030 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 044815 450 QAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY 529 (675)
Q Consensus 450 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 529 (675)
.|++++|+..+++..+.. +.+...+..+...+.+.|++++|.+.+++..+... .+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999888763 44678888999999999999999999999988653 3577888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc---CCHHHHHHHHHHHhh
Q 044815 530 FQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQ---GDSATAMIILESLDK 605 (675)
Q Consensus 530 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 605 (675)
+++..+.. +.+...+..+..++.+.|++++|.+.++++++. .|+ ...+..++..+... |+.++|.+.+++...
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99988753 334778888999999999999999999999884 443 56778888999999 999999999988765
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=2e-08 Score=83.57 Aligned_cols=99 Identities=14% Similarity=-0.027 Sum_probs=90.1
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 044815 573 ISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAA 649 (675)
Q Consensus 573 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 649 (675)
+.|+. ..+...+..|.+.|++++|++.|++..+ +.+...|..++.+|.+.|++++|+..++++++.+|. +...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHH
Confidence 55654 5667899999999999999999999765 457888999999999999999999999999999998 8999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHh
Q 044815 650 LKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 650 l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
++.++...|++++|.+.++++++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=5.3e-08 Score=94.34 Aligned_cols=163 Identities=12% Similarity=0.044 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-
Q 044815 469 NPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGA- 547 (675)
Q Consensus 469 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 547 (675)
+.+...+..+...+.+.|++++|...|+++.+... -+...+..+...+.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 33455666777777788888888888888877643 35667777888888888888888888887663 455443322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CC-C--hhhHHHHHHHHHcc
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK-KL-W--IRTVNTLIRKLCSE 622 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~--~~~~~~l~~~~~~~ 622 (675)
....+...++.++|...++++++ ..|+ ...+..++..|...|++++|...++++.. .| + ...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22235667777778888888877 3343 46667788888888888888888888655 22 2 55678888888888
Q ss_pred CCHHHHHHHHHHHh
Q 044815 623 KRVGMAALFFHKLL 636 (675)
Q Consensus 623 g~~~~A~~~~~~~~ 636 (675)
|+.++|...|++.+
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888888887765
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=1.5e-07 Score=91.55 Aligned_cols=161 Identities=6% Similarity=-0.065 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHH
Q 044815 511 TSMICGYLRDGNISSAVKYFQRMNQIGCAPDN-----ITYGALISGLCKQSKLDEACQFYESMIGKGI---SPC--EVTR 580 (675)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~--~~~~ 580 (675)
...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...++++++... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33455556666666666666655543211110 1223344445566677777777766664211 111 2355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh----CCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC----C-CHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK----KLW-----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN----V-DRVS 646 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p-~~~~ 646 (675)
..++..|...|++++|...++++.+ .++ ..++..++..|.+.|++++|+.+++++++.... . -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5666667777777777777666541 111 135666777777777777777777776654211 0 1456
Q ss_pred HHHHHHHHHhcCchhHH-HHHHHHHH
Q 044815 647 LAALKNACYESNKYALF-SDLSQRIA 671 (675)
Q Consensus 647 ~~~l~~~~~~~g~~~~A-~~~~~~~~ 671 (675)
|..++.+|...|++++| ...+++++
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777777777777777 66666665
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=1.4e-08 Score=87.25 Aligned_cols=110 Identities=10% Similarity=-0.081 Sum_probs=81.8
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 528 KYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 528 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..++++.. +.|+ ...+..+...+...|++++|...|+++++ ..| +...+..++.+|...|++++|+..|+++..
T Consensus 8 ~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 3343 44666677788888888888888888887 334 455667788888888888888888888654
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 606 --KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 606 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+...|..++.+|...|++++|+..|+++++..|.
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 346677888888888888888888888888887664
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=5e-08 Score=96.79 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPC----------------EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
...+..+...+.+.|++++|+..|+++++ +.|+ ...+..++.+|.+.|++++|+..++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666667777777777777666 2333 35677788888888888888888888655
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHH-HHHHHHHHhc
Q 044815 606 --KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALF-SDLSQRIAEG 673 (675)
Q Consensus 606 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 673 (675)
+.+...|..++.+|...|++++|+..|+++++.+|. +...+..++.++...|++++| ..+++++.++
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888899999999999999888888 888888889899999998888 5566666553
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=6.3e-08 Score=86.10 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=25.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 375 YGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQ 430 (675)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 430 (675)
..+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 34444455555555554444332 22344444444555555555555555544433
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=1.5e-07 Score=82.41 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLC 620 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 620 (675)
.+..+...+...|++++|...|++.++. .| +...+..++..+...|++++|...+++... +.+...|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555555666666666666666666652 23 345556666666677777777776666544 234556777777777
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHHhcCchhHHHHHHHHHHh
Q 044815 621 SEKRVGMAALFFHKLLGKDQNVDRVSLAAL--KNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
..|++++|...|+++++.+|. +...+..+ +..+...|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 778888888888887777776 55555433 3336777888888877776543
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=7.8e-08 Score=90.37 Aligned_cols=194 Identities=10% Similarity=-0.023 Sum_probs=126.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 044815 449 KQAETKQALGLFCRMVKAGLNPDIHAYTTL-------IAAFCRQKKMKESEKFFQEAITAGLFPT--------------- 506 (675)
Q Consensus 449 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 506 (675)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+....+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5788888888888888764 3356677766 45555555566666555555441 111
Q ss_pred -------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 044815 507 -------KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC--E 577 (675)
Q Consensus 507 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~ 577 (675)
...+..+...+...|++++|.++|+.+... .|+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345566777788888888888777653 3554444455556777888888888887554421 111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDKKL-----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
..+..++.++...|++++|+..|++....+ ....+...+.++.+.|+.++|...|++++..+|. ...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 356677778888888888888888775433 2235566777777888888888888888887775 4444444
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=2.7e-08 Score=96.04 Aligned_cols=194 Identities=12% Similarity=-0.036 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
+...+..+...+.+.|++++|...|+++++... .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455666777777778888888888887777542 366777778888888888888888888877642 224667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHH
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCEV-TRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
++...|++++|...|+++++. .|+.. .+...+....+.++..... .......+.+......+...+ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWN-SIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHH-HHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 888888888888888887762 23110 0001111111111111111 111111223333333343322 67888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHh
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNACYES-NKYALFSDLSQRIAE 672 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 672 (675)
+.++++++.+|. +......+...+.+. +++++|.++++++.+
T Consensus 156 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888888775 666666666666665 678888888887654
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=2.7e-07 Score=86.76 Aligned_cols=124 Identities=14% Similarity=0.025 Sum_probs=52.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 044815 478 LIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD--NITYGALISGLCKQ 555 (675)
Q Consensus 478 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~ 555 (675)
+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3444444555555555554444322 222233333334445555555555554333210 000 11334444445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 556 SKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 556 g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
|++++|+..|++.......|. .......+.++.+.|+.++|...|+++.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555443221132 1233444445555555555555555443
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=1.1e-06 Score=85.37 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=67.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 044815 303 IDGLCKKGWTEKAFRLFLKLVRSDNYKPNVH----TYTAMISGYCKEEKMNRAEMLLERMKEQGLL-PN----TNTYTSL 373 (675)
Q Consensus 303 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 373 (675)
+..+...|++++|.+.+++..+.....|+.. .+..+...+...+++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556667777777777776655433333321 2223445555556666666666666653211 12 2245666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 374 IYGHCKVGNFERAYDLMDLMGK----E-GCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
...|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++.+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666666666666666666552 1 11111 2244555555555566666555555544
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=3.7e-07 Score=83.88 Aligned_cols=126 Identities=16% Similarity=0.024 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 044815 475 YTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCK 554 (675)
Q Consensus 475 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 554 (675)
+..+...+...|++++|...|+++. .|+...|..+...|...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455556666677777777666553 3466666666666777777777777776666542 2245566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCC--------------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 555 QSKLDEACQFYESMIGKGIS--------------PC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 555 ~g~~~~A~~~~~~~~~~g~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.|++++|...|+++++.... |+ ...+..++.+|.+.|++++|...+++...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777777666663211 11 13445555556666666666666655443
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=3.5e-06 Score=81.97 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 643 DRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 643 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
....+..++.+|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 555666666666666666666666666554
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=3e-07 Score=76.55 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+...|++++|...++++++. .| +...+..++..+...|++++|...+++... +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666667777777777777777777763 23 345666777777788888888887777654 3356677888888
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchh
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYA 661 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 661 (675)
+...|++++|...++++++.+|. +...+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcCC
Confidence 89999999999999999988887 7888888888888888753
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=2.2e-07 Score=77.81 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+...|++++|...++++++. .| +...+..++..|...|++++|.+.++++.+ +.+...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 445666666677777777777777777663 23 345566667777777777777777776554 2345667777778
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
+.+.|++++|+..|+++++..|. +...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 88888888888888888887776 66677777777766553
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=1.8e-07 Score=85.14 Aligned_cols=153 Identities=14% Similarity=-0.043 Sum_probs=73.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 044815 484 RQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI----GCAP-DNITYGALISGLCKQSKL 558 (675)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~ 558 (675)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664433332 11223455666666666666666666666665441 1111 123455555566666666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hhhHHHHHHHHHccCC
Q 044815 559 DEACQFYESMIGK----GISP--CEVTRVTLAYEYCKQGDSATAMIILESLDK----KLW----IRTVNTLIRKLCSEKR 624 (675)
Q Consensus 559 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~ 624 (675)
++|...+++.++. +-.| ....+..++..+...|++++|...+++... .++ ...+..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665542 1011 012334455555555666555555555432 111 1123444555555555
Q ss_pred HHHHHHHHHHHhc
Q 044815 625 VGMAALFFHKLLG 637 (675)
Q Consensus 625 ~~~A~~~~~~~~~ 637 (675)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=7.8e-07 Score=73.25 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKL 619 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 619 (675)
...+..+...+...|++++|...++++++... .+...+..++..+.+.|++++|...++++.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34556666666677777777777777665321 1344556666777777777777777776544 23556677788888
Q ss_pred HccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 044815 620 CSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESN 658 (675)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 658 (675)
...|++++|...++++++..|. +...+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 8888888888888888888877 7777777777766543
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.6e-07 Score=76.73 Aligned_cols=109 Identities=15% Similarity=-0.011 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+.+.|++++|+..|++.++. .| +...+..++.+|.+.|++++|+..+++... +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 446677777888888888888888888873 34 356677788888888888888888888655 3456677888888
Q ss_pred HHccCCHHHHHHHHHHHhcCC------CCCCHHHHHHHHHH
Q 044815 619 LCSEKRVGMAALFFHKLLGKD------QNVDRVSLAALKNA 653 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~ 653 (675)
+...|++++|+..|+++++.+ |. +...+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHH
Confidence 888888888888888888877 44 55555544443
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=2e-06 Score=83.49 Aligned_cols=159 Identities=9% Similarity=-0.051 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--HhHHH
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDI------HAYTTLIAAFCRQKKMKESEKFFQEAITAGLF---PT--KETYT 511 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~ 511 (675)
.+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+.... +. ..+|+
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 334445555555555555544443211 11 11223334444555666666666555542111 11 23555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHH
Q 044815 512 SMICGYLRDGNISSAVKYFQRMNQI-GCAPD-----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EVTR 580 (675)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~ 580 (675)
.+...|...|++++|+..+++..+. ...|+ ..++..+...|...|++++|...+++.++. +.... ..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5555566666666666666555421 00111 134555555566666666666666655431 10000 2344
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHH
Q 044815 581 VTLAYEYCKQGDSATA-MIILES 602 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A-~~~~~~ 602 (675)
..++..|.+.|+.++| ...+++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Confidence 4455555555555555 444443
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=2.1e-07 Score=79.26 Aligned_cols=98 Identities=11% Similarity=-0.154 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..+...+.+.|++++|...|+++++ ..| +...+..++.+|.+.|++++|+..|++... +.+...|..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34566677778888888888888888887 334 345667788888888888888888888655 3466777888888
Q ss_pred HHccCCHHHHHHHHHHHhcCCCC
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
|...|++++|+..|+++++..|.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 88888888888888888887764
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.7e-07 Score=83.40 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=98.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HHHcCCH-
Q 044815 517 YLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYE-YCKQGDS- 593 (675)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~- 593 (675)
+...|++++|+..+++..+.. +.+...|..+...|...|++++|...|+++++. .| +...+..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 356789999999999988753 346788999999999999999999999999883 34 45667778888 7899998
Q ss_pred -HHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 594 -ATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 594 -~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
++|...++++.. +.+...+..++..+...|++++|+..|+++++..|.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999998765 346778889999999999999999999999999886
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.64 E-value=2.3e-07 Score=76.35 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYES 657 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 657 (675)
+..++..+.+.|++++|+..++++.. +.+...|..++.++...|++++|+..|+++++.+|. +...+..++.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34556667777777777777777554 335666777777777777777777777777777777 777777777777777
Q ss_pred CchhHHHHHHHHHHh
Q 044815 658 NKYALFSDLSQRIAE 672 (675)
Q Consensus 658 g~~~~A~~~~~~~~~ 672 (675)
|++++|.+.++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777765
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=3e-07 Score=78.80 Aligned_cols=102 Identities=13% Similarity=-0.053 Sum_probs=81.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHH
Q 044815 538 CAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVN 613 (675)
Q Consensus 538 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 613 (675)
+.|+ ...+..+...+.+.|++++|...|+++++ +.|+ ...+..++.+|.+.|++++|+..|++... +.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3444 44677777788888889999998888888 4454 46667788888888999999988888755 45677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++.+|.+.|++++|+..|+++++..++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999988765
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=4.5e-07 Score=79.38 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIR 617 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 617 (675)
+...+..+...+...|++++|+..|++.++ +.| +...+..++.+|.+.|++++|+..+++... +.+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456788888899999999999999999998 445 456778899999999999999999999765 346778899999
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+|.+.|++++|+..|+++++.+|. +..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~ 114 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN-GGS 114 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS-SCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-chH
Confidence 999999999999999999998886 444
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=5.7e-07 Score=81.77 Aligned_cols=157 Identities=12% Similarity=-0.025 Sum_probs=89.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHHHcCC
Q 044815 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA----GL-FPTKETYTSMICGYLRDGN 522 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 522 (675)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. .....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777744444331 1234556666777777777777777777766651 11 1123456666667777777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcC
Q 044815 523 ISSAVKYFQRMNQI----GCAP--DNITYGALISGLCKQSKLDEACQFYESMIGK----GISP-CEVTRVTLAYEYCKQG 591 (675)
Q Consensus 523 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g 591 (675)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++.++. +... ...++..++..|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777765542 1011 1234566666677777777777777776532 1110 0123355666777777
Q ss_pred CHHHHHHHHHHHhh
Q 044815 592 DSATAMIILESLDK 605 (675)
Q Consensus 592 ~~~~A~~~~~~~~~ 605 (675)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766544
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=1.6e-07 Score=80.57 Aligned_cols=109 Identities=16% Similarity=-0.009 Sum_probs=69.1
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044815 493 KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKG 572 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 572 (675)
..|+++.+... .+...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|+..|+++++
T Consensus 8 ~~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 83 (148)
T 2vgx_A 8 GTIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-- 83 (148)
T ss_dssp CSHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred hhHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 34444444321 234455666667777777777777777776642 22466666677777777777777777777776
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 573 ISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 573 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.|+ ...+..++.+|...|++++|...|++...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3343 35566677777777777777777776544
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=9.4e-07 Score=74.48 Aligned_cols=114 Identities=16% Similarity=0.036 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHH
Q 044815 540 PDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLI 616 (675)
Q Consensus 540 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 616 (675)
.+...+..+...+...|++++|...|++.++. .|+ ...+..++.+|...|++++|...+++... +.+...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45778888888899999999999999998874 343 56777888888899999999998888765 34667788888
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHH
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQN----VDRVSLAALKNACY 655 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~ 655 (675)
.++...|++++|+..|+++++..|. .+......+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999888877654 23444444444433
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=9.2e-07 Score=80.21 Aligned_cols=120 Identities=14% Similarity=-0.027 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--C
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGIS-PC--------------EVTRVTLAYEYCKQGDSATAMIILESLDK--K 606 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 606 (675)
.+..+...+...|++++|...|++.++.... |+ ...+..++.+|.+.|++++|+..+++... +
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555666666666666666552111 10 14566677777788888888887777654 3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHH
Q 044815 607 LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFS 664 (675)
Q Consensus 607 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 664 (675)
.+...+..++.+|...|++++|+..|+++++..|. +...+..++.++...++.+++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888877 7778888888888777777766
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=4.6e-07 Score=75.31 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-C-------hhh
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDKK-L-W-------IRT 611 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~-------~~~ 611 (675)
...+..+...+.+.|++++|+..|+++++ +.|+ ...+..++.+|.+.|++++|++.+++.... | . ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34667777888888888888888888877 4454 455667778888888888888877775431 1 1 124
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
|..++.++...|++++|++.|+++++ ..||+.+...+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 56677777777788888887777654 55666555443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=2.5e-06 Score=69.36 Aligned_cols=109 Identities=18% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK 618 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 618 (675)
...+..++..+...|++++|...++++++. .| +...+..++..|...|++++|...+++... +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345556666677777777777777777663 23 345566677777777777777777777554 2356677788888
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
+...|++++|...++++++.+|. +...+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHh
Confidence 88888899999999888888887 66666666554
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.3e-06 Score=73.04 Aligned_cols=112 Identities=16% Similarity=0.048 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHH
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC----EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNT 614 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 614 (675)
+...+..+...+...|++++|...|++.++ ..|+ ...+..++..|.+.|++++|+..+++... +.+...|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 455667777777777888888888887777 4455 35566677778888888888888877654 335667778
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 615 LIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
++.++...|++++|...|+++++.+|. +...+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHh
Confidence 888888888888898888888888877 6666666655543
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.55 E-value=5.3e-05 Score=73.70 Aligned_cols=177 Identities=10% Similarity=0.030 Sum_probs=116.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-CHHH
Q 044815 165 EIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELG-LVEYAEEVFDEMCARGVCADASSYKLMVVAYCRM-G-RVTE 241 (675)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 241 (675)
..+..++|++++.+++..+ |-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445567777888887765 556677888888888888 5999999999998874 45788888887777776 6 8889
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 044815 242 ADRWLSAMLDRGAILDNATLTLLITAFCDKGFRG-----SIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGW----- 311 (675)
Q Consensus 242 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 311 (675)
++++++++.+.... |...|+.-.-.+.+.+... .+.++++..+++.+..+. |..+|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 99999999876433 5555544333333221001 123677777777766443 66677766666666665
Q ss_pred --HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 044815 312 --TEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEK 347 (675)
Q Consensus 312 --~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 347 (675)
++++++.+++.+... +-|...|+.+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 566677766666543 3455566655554444443
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.54 E-value=5.6e-05 Score=73.18 Aligned_cols=242 Identities=8% Similarity=0.001 Sum_probs=132.5
Q ss_pred HHHHHHHHHH---HHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcC
Q 044815 402 IYAYNAIIDG---LCKKGRVQ-EAYELLKKAFQRELQADKITYTILLSEHLKQAE----------TKQALGLFCRMVKAG 467 (675)
Q Consensus 402 ~~~~~~li~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~ 467 (675)
+..|..+... ..+.|.++ +|+++++.++..+ +.+..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3444444333 33455544 7888888888753 2344556554444433332 466777777776654
Q ss_pred CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHH
Q 044815 468 LNPDIHAYTTLIAAFCRQK--KMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN-ISSAVKYFQRMNQIGCAPDNIT 544 (675)
Q Consensus 468 ~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~ 544 (675)
+-+..+|+.-.-.+.+.+ .++++..+++.+.+... .|...|+.-...+...|. ++++++.++++.+.. .-|...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 335666666666666666 36777777777776653 466666666666666666 467777777777643 234556
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc-----------CCHHHHHH
Q 044815 545 YGALISGLCKQ--------------SKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQ-----------GDSATAMI 598 (675)
Q Consensus 545 ~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~-----------g~~~~A~~ 598 (675)
|+.....+.+. +.++++++.++.++. ..|+. ..++.+-..+.+. +.++++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 66555554443 345666666666666 33433 3333333333333 23455666
Q ss_pred HHHHHhh-CCChhhHHHHHHH-----HHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 599 ILESLDK-KLWIRTVNTLIRK-----LCSEKRVGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 599 ~~~~~~~-~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
.++++.. .|+. .|..+..+ ....|..++....+.++++.+|. ...-|..+.
T Consensus 260 ~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~ 316 (331)
T 3dss_A 260 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHH
T ss_pred HHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHH
Confidence 5555543 2221 23222111 12345556666666666666665 444444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.7e-06 Score=71.71 Aligned_cols=94 Identities=19% Similarity=0.139 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044815 508 ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYE 586 (675)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 586 (675)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..++++++ +.|+ ...+..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 345555566666666666666666665532 22355566666666666666666666666665 2332 3455556666
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 044815 587 YCKQGDSATAMIILESLD 604 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~ 604 (675)
|...|++++|...+++..
T Consensus 82 ~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHH
Confidence 666666666666666543
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=9.4e-07 Score=78.43 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=89.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 044815 483 CRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG-LCKQSKL--D 559 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 559 (675)
...|++++|...+++..+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788888888888887643 467788888888888999999999998887743 2356677777777 7788888 8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 560 EACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+|...++++++. .|+ ...+..++..|...|++++|...++++..
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 899999888873 343 46667788888889999999998888665
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-06 Score=73.03 Aligned_cols=97 Identities=11% Similarity=-0.036 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDKK--LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA 653 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 653 (675)
+...+..++..+.+.|++++|...+++.... .+...|..++..+...|++++|+..++++++..+. +...+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3467788999999999999999999997663 46778899999999999999999999999999988 89999999999
Q ss_pred HHhcCchhHHHHHHHHHHhc
Q 044815 654 CYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 654 ~~~~g~~~~A~~~~~~~~~~ 673 (675)
+...|++++|.+.++++++.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998763
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=1.1e-06 Score=91.27 Aligned_cols=118 Identities=10% Similarity=-0.036 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPD----------------NITYGALISGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 570 (675)
...|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4455666666666666666666666666532 22 23444444455555555555555555544
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHH
Q 044815 571 KGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 571 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 628 (675)
+.| +...++.++.+|.+.|++++|+..|+++.+ +.+...+..+..++.+.|+.++|
T Consensus 346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 222 223344444444444444444444444433 12233344444444444444433
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.6e-06 Score=70.47 Aligned_cols=96 Identities=7% Similarity=-0.187 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNAC 654 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 654 (675)
...+..++..+...|++++|...+++... +.+...+..++..+...|++++|...++++++.+|. +...+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 45677889999999999999999999765 346778899999999999999999999999999988 899999999999
Q ss_pred HhcCchhHHHHHHHHHHhc
Q 044815 655 YESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 655 ~~~g~~~~A~~~~~~~~~~ 673 (675)
...|++++|.+.++++++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
No 157
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.48 E-value=7.4e-06 Score=71.40 Aligned_cols=128 Identities=14% Similarity=0.044 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYG 376 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 376 (675)
..+..+...+...|++++|...|.+.++.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345555666666666666666666665533 2345556666666666666666666666665542 2245555666666
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 044815 377 HCKVGNFERAYDLMDLMGKEGCTPNIYAYNA--IIDGLCKKGRVQEAYELLKKA 428 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~ 428 (675)
+...|++++|...+++..+.. +.+...+.. ++..+.+.|++++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666665543 223333322 222344555666665555543
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=1.6e-06 Score=73.40 Aligned_cols=61 Identities=15% Similarity=-0.043 Sum_probs=39.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcC-------CCCCCHHHH----HHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGK-------DQNVDRVSL----AALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.|..++.++.+.|++++|+..++++++. +|. +...| ...+.++...|++++|...++++++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566666666666666666666666665 665 56666 6667777777777777777766654
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=1.2e-06 Score=84.27 Aligned_cols=192 Identities=14% Similarity=0.024 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 402 IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAA 481 (675)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 481 (675)
...+..+...+.+.|++++|...|++.++.. +.+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555555555555555555555432 2244555555555555555555555555555442 2345555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
+...|++++|...|+++.+.+.. +...+...+....+. .++.. +..........+......+.. + ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 66666666666666665543210 000111111111111 11111 111222222333333332222 2 24666777
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHh
Q 044815 562 CQFYESMIGKGISPCEVTR-VTLAYEYCKQ-GDSATAMIILESLD 604 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~~~ 604 (675)
++.++++++ ..|+.... ..+...+.+. +.+++|.++|+++.
T Consensus 155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777666665 34544333 3333334443 55666777776554
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=1.4e-06 Score=76.27 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=84.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLA 584 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 584 (675)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45678888999999999999999999998853 33678899999999999999999999999998 4454 56778899
Q ss_pred HHHHHcCCHHHHHHHHHHHhh
Q 044815 585 YEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+|.+.|++++|...|++...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=1.5e-06 Score=73.93 Aligned_cols=95 Identities=17% Similarity=-0.015 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044815 508 ETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYE 586 (675)
Q Consensus 508 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 586 (675)
..+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|+++++. .|+ ...+..++.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHH
Confidence 345555666667777777777777766642 224556666666777777777777777777663 332 3455666777
Q ss_pred HHHcCCHHHHHHHHHHHhh
Q 044815 587 YCKQGDSATAMIILESLDK 605 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~ 605 (675)
|...|++++|.+.|++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766543
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=3.5e-06 Score=83.40 Aligned_cols=123 Identities=7% Similarity=0.057 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--------------KETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
+...+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666677777777777777777666432211 245555555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 044815 537 GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATA 596 (675)
Q Consensus 537 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 596 (675)
. +.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..++.++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 12344555555555555555555555555555 2332 23444455555555555544
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=1.5e-06 Score=75.50 Aligned_cols=129 Identities=14% Similarity=0.002 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hh
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGIS-PCE----VTRVTLAYEYCKQGDSATAMIILESLDK----KLW----IR 610 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~ 610 (675)
++..+...+...|++++|...+++.++.... ++. ..+..++..|...|++++|.+.+++... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555566666666666555542000 011 2444556666666666666666665433 111 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-----VDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
.+..++..+...|++++|...++++++.... ....++..++.++...|++++|.+.++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566777777778888888777777654211 1134677788888888888888888888765
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.43 E-value=1.3e-05 Score=65.74 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044815 297 YTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYG 376 (675)
Q Consensus 297 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 376 (675)
..+..+...+...|++++|.+.|.++++.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 344455555555555555555555554432 2234445555555555555555555555554432 1234444455555
Q ss_pred HHhcCCHHHHHHHHHHHhhc
Q 044815 377 HCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~ 396 (675)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=0.00019 Score=69.42 Aligned_cols=220 Identities=11% Similarity=0.060 Sum_probs=126.6
Q ss_pred hcCCH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044815 379 KVGNF-ERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGR----------VQEAYELLKKAFQRELQADKITYTILLSEH 447 (675)
Q Consensus 379 ~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 447 (675)
+.|.+ ++|+++.+.+...+ +-+..+|+.--..+...+. +++++.+++.++..+ +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44544 36777777777654 3344445543333333332 566777777776653 34666666666666
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----
Q 044815 448 LKQA--ETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKK-MKESEKFFQEAITAGLFPTKETYTSMICGYLRD---- 520 (675)
Q Consensus 448 ~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 520 (675)
...+ .+++++.+++.+.+.. +-+..+|+.-.-.+...|. ++++.+.+.++++..+ -|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 6666 3677777777777764 3466666666666666666 4777777777776654 4666666665555444
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCH-H
Q 044815 521 ----------GNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQ-----------SKLDEACQFYESMIGKGISPCE-V 578 (675)
Q Consensus 521 ----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~-~ 578 (675)
+.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.++++++ +.||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccch
Confidence 34667777777776632 22455565444444443 346677777777776 44543 2
Q ss_pred HHHHHHH---HHHHcCCHHHHHHHHHHHhh
Q 044815 579 TRVTLAY---EYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 579 ~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+..++. .....|..+++...++++.+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 2222221 11234556666666666654
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.6e-06 Score=84.40 Aligned_cols=92 Identities=5% Similarity=-0.116 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh----CC----ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCC---CCCC---HH
Q 044815 580 RVTLAYEYCKQGDSATAMIILESLDK----KL----WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKD---QNVD---RV 645 (675)
Q Consensus 580 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~---~~ 645 (675)
+..++..|...|++++|..+++++.. .. ....+..++..|...|++++|..++++++... +.|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 34445555555555555555544322 00 12234445555555555555555555444321 1111 12
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 044815 646 SLAALKNACYESNKYALFSDLSQRIA 671 (675)
Q Consensus 646 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 671 (675)
.+..++..+...|++++|...+.++.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444555555555555554443
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=1.2e-05 Score=66.66 Aligned_cols=118 Identities=12% Similarity=-0.035 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044815 296 VYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIY 375 (675)
Q Consensus 296 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 375 (675)
...+..+...+...|++++|.+.|++.+... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3444555555555666666666665555432 2344455555555555555665555555555432 123445555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 044815 376 GHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGR 417 (675)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 417 (675)
.+...|++++|...+++..+.. +.+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555555555442 2244444444444444443
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=3.8e-06 Score=69.77 Aligned_cols=103 Identities=15% Similarity=0.039 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCC---hhhHHHHH
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPCE----VTRVTLAYEYCKQGDSATAMIILESLDK--KLW---IRTVNTLI 616 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~ 616 (675)
..+...+...|++++|...|+++++.. |+. ..+..++.+|.+.|++++|...++++.. +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 446677889999999999999998843 333 4677888999999999999999998765 233 55678888
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALK 651 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 651 (675)
.++.+.|++++|+..|+++++..|. +........
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPG-SDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHHH
Confidence 9999999999999999999998887 555544433
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=8e-06 Score=67.74 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHH
Q 044815 510 YTSMICGYLRDGNISSAVKYFQRMNQIGCAPD-N---ITYGALISGLCKQSKLDEACQFYESMIGKGISPC----EVTRV 581 (675)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~ 581 (675)
+..+...+...|++++|...|+++.+.. |+ . ..+..+..++...|++++|...|+++++. .|+ ...+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 3456677788888888888888887743 33 2 46677788888888888888888888873 343 45567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 582 TLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 582 ~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.++.+|.+.|++++|...|+++..
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888888888765
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=5.5e-06 Score=69.63 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=76.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTL 583 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 583 (675)
.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...++++++. .| +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 456778888888888888888888888887753 234677888888888888888888888888873 34 34667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 044815 584 AYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 584 ~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+.+|...|++++|...++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888887654
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.3e-06 Score=86.63 Aligned_cols=146 Identities=10% Similarity=0.008 Sum_probs=71.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYE 586 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 586 (675)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...+..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666677777778888888888877663 344331 112222232222110 1256667777
Q ss_pred HHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCchhHH
Q 044815 587 YCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNA-CYESNKYALF 663 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A 663 (675)
|.+.|++++|+..++++.. +.+...|..++.+|...|++++|+..|+++++..|. +...+..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888777777654 335667777777788888888888888887777776 66666666665 3345566677
Q ss_pred HHHHHHHHh
Q 044815 664 SDLSQRIAE 672 (675)
Q Consensus 664 ~~~~~~~~~ 672 (675)
.++++++++
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777766654
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=6.9e-06 Score=68.06 Aligned_cols=94 Identities=17% Similarity=0.292 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHH
Q 044815 476 TTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG--CAPD----NITYGALI 549 (675)
Q Consensus 476 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l~ 549 (675)
..+...+.+.|++++|...|+++++..+ .+...|..+..+|.+.|++++|+..+++.++.. ..++ ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344444444444444444444444321 233344444444444444444444444443311 0011 12334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 044815 550 SGLCKQSKLDEACQFYESMIG 570 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~ 570 (675)
.++...|++++|++.|++.++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 444445555555555554444
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=6.7e-06 Score=70.06 Aligned_cols=97 Identities=14% Similarity=-0.109 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 044815 576 CEVTRVTLAYEYCKQGDSATAMIILESLDKK-LW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAAL 650 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 650 (675)
+...+..++..+...|++++|.+.|++.... ++ ...|..++..+...|++++|+..++++++..|. +...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 4567788999999999999999999998763 44 567888999999999999999999999999888 88999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhc
Q 044815 651 KNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 651 ~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
+.++...|++++|.+.++++++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998763
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=4.6e-06 Score=66.97 Aligned_cols=96 Identities=7% Similarity=-0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CC--ChhhHHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KL--WIRTVNTLIRKL 619 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~l~~~~ 619 (675)
.+..+...+...|++++|...++++++... .+...+..++..|...|++++|.+.+++..+ +. +...|..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344455555555555555555555554211 1233344444455555555555555544433 12 233444444444
Q ss_pred Hcc-CCHHHHHHHHHHHhcCCC
Q 044815 620 CSE-KRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 620 ~~~-g~~~~A~~~~~~~~~~~~ 640 (675)
.+. |++++|++.++++++.+|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHhCCHHHHHHHHHHHhhccc
Confidence 444 555555555555444444
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=4.5e-06 Score=72.74 Aligned_cols=116 Identities=13% Similarity=0.010 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGK--------GI--------SPCE-VTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~--------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
...+......+.+.|++++|+..|++.++. .. .|.. ..+..++.+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999999873 00 2222 466778899999999999999999876
Q ss_pred h--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcC
Q 044815 605 K--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDR-VSLAALKNACYESN 658 (675)
Q Consensus 605 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 658 (675)
. +.+...|..++.+|...|++++|+..|+++++.+|. +. .....+..+....+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence 5 456778899999999999999999999999999887 66 44555555444433
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=3.5e-06 Score=69.96 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CC-------hhhH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK--LW-------IRTV 612 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-------~~~~ 612 (675)
...+..+...+...|++++|...++++++.. +.+...+..++..|...|++++|...++++... .+ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567778888899999999999999998743 124567778888999999999999999886552 12 5677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 044815 613 NTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYES 657 (675)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 657 (675)
..++..+...|++++|...|+++++ ..|+...+..+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 8888889999999999999998876 667877777666654443
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=5e-06 Score=68.23 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 622 (675)
..+...+.+.|++++|+..|+++++ ..| +...+..++.++...|++++|+..+++... +.+...|..++.++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445566677777777777777776 334 345556677777777777777777777544 33566777777888888
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q 044815 623 KRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~ 641 (675)
|++++|+..++++++.+|.
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 8888888888888877664
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=5.6e-06 Score=72.12 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=80.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQI--------GC--------AP-DNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
....+......+.+.|++++|+..|++..+. .. .| +...|..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3557788888999999999999999998874 00 12 2357888888999999999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 569 IGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 569 ~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++ +.|+ ...+..++.+|...|++++|...|++...
T Consensus 90 l~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 98 4454 56778899999999999999999998765
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=1.4e-06 Score=71.20 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=71.4
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 554 KQSKLDEACQFYESMIGKGI-SPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
..|++++|+..|+++++.+. .|+ ...+..++.+|.+.|++++|+..++++.+ +.+...+..++.++.+.|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46889999999999998431 243 35667889999999999999999999765 446778888999999999999999
Q ss_pred HHHHHHhcCCCCCCHHH
Q 044815 630 LFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~ 646 (675)
..++++++..|. +...
T Consensus 82 ~~~~~al~~~p~-~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSD-DETI 97 (117)
T ss_dssp HHHHHHHHHHCC-CHHH
T ss_pred HHHHHHHHhCCC-cHHH
Confidence 999999998886 5444
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1.2e-05 Score=66.64 Aligned_cols=111 Identities=7% Similarity=0.055 Sum_probs=86.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGI--SPC----EVTR 580 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~ 580 (675)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888889999999999999999988753 34677888899999999999999999999987421 122 5677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh-CCChhhHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESLDK-KLWIRTVNTLIRK 618 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 618 (675)
..++..|.+.|++++|.+.++++.. .++...+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7889999999999999999998765 3455555444443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.28 E-value=4.5e-06 Score=72.27 Aligned_cols=130 Identities=16% Similarity=0.040 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGC-APD----NITYGALISGLCKQSKLDEACQFYESMIGK----GISPC-EV 578 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~ 578 (675)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++.++. +..+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555566666666666655543210 011 135556666677777777777777776542 11111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh----CCC----hhhHHHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK----KLW----IRTVNTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
.+..++..+...|++++|.+.+++... ..+ ...+..++..+...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455667777777777777777776543 111 334667788888888888888888887654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=1.7e-06 Score=90.05 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=52.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHH
Q 044815 553 CKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 553 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
.+.|++++|.+.|+++++ +.|+ ...+..++.+|.+.|++++|++.+++..+ +.+...|..++.+|.+.|++++|+
T Consensus 17 ~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444444 2222 23344444444445555555544444433 123444555555555555566666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHH--HHhcCchhHHHHHHH
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNA--CYESNKYALFSDLSQ 668 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 668 (675)
+.|+++++.+|. +...+..++.+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666555555554 34444444444 555566666655555
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=1.6e-06 Score=70.81 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=60.4
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 044815 519 RDGNISSAVKYFQRMNQIGC-AP-DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSAT 595 (675)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 595 (675)
..|++++|+..|++..+.+. .| +...+..+..+|...|++++|+..|+++++. .|+ ...+..++.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 35778888888888887431 13 3456777888888888888888888888874 343 4666778888888888888
Q ss_pred HHHHHHHHhh
Q 044815 596 AMIILESLDK 605 (675)
Q Consensus 596 A~~~~~~~~~ 605 (675)
|+..+++...
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=6.9e-06 Score=82.28 Aligned_cols=138 Identities=10% Similarity=-0.018 Sum_probs=96.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 044815 507 KETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAY 585 (675)
Q Consensus 507 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 585 (675)
...+..+...+.+.|++++|+..|++..+. .++.. .... .++..+ ..| +...+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHH
Confidence 445666666777777777777777666541 00000 0000 111111 222 2356677888
Q ss_pred HHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHH
Q 044815 586 EYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALF 663 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 663 (675)
+|.+.|++++|+..++++.+ +.+...|..++.+|...|++++|+..|+++++..|. +...+..+..++...++.+++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888765 346677888999999999999999999999999888 888899999999888888877
Q ss_pred HHH
Q 044815 664 SDL 666 (675)
Q Consensus 664 ~~~ 666 (675)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=9.8e-06 Score=65.00 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN-VDRVSLAALKNACY 655 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 655 (675)
.+..++..+...|++++|...++++.+ +.+...|..++..+...|++++|+..++++++..+. .+...+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 344555666666666666666666543 234455566666666666666666666666665543 13555666666666
Q ss_pred hc-CchhHHHHHHHHHHhc
Q 044815 656 ES-NKYALFSDLSQRIAEG 673 (675)
Q Consensus 656 ~~-g~~~~A~~~~~~~~~~ 673 (675)
.. |++++|.+.++++++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 66 6666666666666543
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=5.7e-06 Score=70.02 Aligned_cols=94 Identities=14% Similarity=-0.060 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHHhh-------
Q 044815 546 GALISGLCKQSKLDEACQFYESMIGKGISPC--------E-----VTRVTLAYEYCKQGDSATAMIILESLDK------- 605 (675)
Q Consensus 546 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 605 (675)
......+.+.|++++|+..|++.++ +.|+ . ..|..++.++.+.|++++|+..+++...
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344445555555555555555554 2232 1 2555566666666666666666666432
Q ss_pred --CCChhhH----HHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 606 --KLWIRTV----NTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 606 --~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+.+...| ...+.++...|++++|+..|+++++..|.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2345566 88888888899999999999988877664
No 187
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=1.8e-05 Score=71.51 Aligned_cols=94 Identities=13% Similarity=-0.050 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHH
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKL 619 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 619 (675)
..|..+..+|...|++++|+..++++++. .| +...+..++.+|...|++++|.+.|++... +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45666666777777777777777777663 33 345566677777777777777777776544 23455666666666
Q ss_pred HccCCHHHHH-HHHHHHhcC
Q 044815 620 CSEKRVGMAA-LFFHKLLGK 638 (675)
Q Consensus 620 ~~~g~~~~A~-~~~~~~~~~ 638 (675)
...++.+++. ..+.++...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 6666666555 444444443
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.5e-05 Score=79.36 Aligned_cols=198 Identities=8% Similarity=-0.058 Sum_probs=123.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQRELQADK----------------ITYTILLSEHLKQAETKQALGLFCRMVKAG-LNP 470 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p 470 (675)
-...+.+.|++++|.+.|.++.+....... ..+..++..|...|++++|.+.+..+.+.- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999988876433211 236677788888888888888887766531 111
Q ss_pred CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-
Q 044815 471 DIH----AYTTLIAAFCRQKKMKESEKFFQEAITA----GLFP-TKETYTSMICGYLRDGNISSAVKYFQRMNQI--GC- 538 (675)
Q Consensus 471 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~- 538 (675)
+.. +.+.+...+...|+.+.|..++...... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 2223333344567788888887776532 2112 2446677777888888888888888776542 11
Q ss_pred -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 539 -APD-NITYGALISGLCKQSKLDEACQFYESMIGK--GIS-P-C--EVTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 539 -~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.+. ..++..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...|.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 121 346677777788888888888888776642 111 1 1 12334455666677788888777776655
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=9.1e-06 Score=84.58 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 480 AAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLD 559 (675)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 559 (675)
..+.+.|++++|.+.|+++.+... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 344556666666666666665432 245566666666666666666666666666532 123455666666666666666
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHHcCCHHHHHHHHH
Q 044815 560 EACQFYESMIGKGISPC-EVTRVTLAYE--YCKQGDSATAMIILE 601 (675)
Q Consensus 560 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 601 (675)
+|.+.|+++++. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666652 232 1233333333 555566666666655
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.21 E-value=2.5e-05 Score=65.70 Aligned_cols=112 Identities=13% Similarity=-0.029 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 044815 521 GNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCK----QGDSATA 596 (675)
Q Consensus 521 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 596 (675)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +......|+..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46677888888777766 33333 5556666667777888888777754 35666777777777 6777777
Q ss_pred HHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHhcCCC
Q 044815 597 MIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 640 (675)
.++|++..+..+...+..|...|.. .+++++|+.+|+++.+.|.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777777776777777777777777 6777777777777777753
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=6.6e-05 Score=79.57 Aligned_cols=171 Identities=6% Similarity=-0.078 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 044815 488 MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGN----------ISSAVKYFQRMNQIGCAPDNITYGALISGLCKQS- 556 (675)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 556 (675)
.++|.+.++++++.+. -+..+|+.-...+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 4566777777776543 245556665555555555 778888888877743 224667777777777777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhh--CCChhhHHHHHHHHHcc----------
Q 044815 557 -KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG-DSATAMIILESLDK--KLWIRTVNTLIRKLCSE---------- 622 (675)
Q Consensus 557 -~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---------- 622 (675)
++++++++++++++.... +...|..-...+.+.| .++++++.++++.+ +.+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888874322 3456666667777777 77888888777655 34677777766666552
Q ss_pred ----CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhH
Q 044815 623 ----KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYAL 662 (675)
Q Consensus 623 ----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 662 (675)
+++++|++++++++..+|. |...|..+...+.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5689999999999999999 99999999999998887554
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=2.9e-06 Score=68.29 Aligned_cols=92 Identities=11% Similarity=-0.135 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCC------HHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVD------RVSLA 648 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~ 648 (675)
...+..++..+.+.|++++|++.+++... +.+...|..++.++.+.|++++|+..++++++..|. + ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 44566677777777888888877777654 345667888888888999999999999999888887 5 66778
Q ss_pred HHHHHHHhcCchhHHHHHHHH
Q 044815 649 ALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 649 ~l~~~~~~~g~~~~A~~~~~~ 669 (675)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888777665544
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=8.2e-05 Score=62.49 Aligned_cols=108 Identities=15% Similarity=0.031 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHc----cCCHHHHHHHH
Q 044815 557 KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCS----EKRVGMAALFF 632 (675)
Q Consensus 557 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 632 (675)
++++|...|++..+.|. |+. . |+..|...+..++|.++|++..+..+...+..|+..|.. .+++++|+++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 44555555555555442 111 1 445555555555555555555555555555555555554 45555555555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHh
Q 044815 633 HKLLGKDQNVDRVSLAALKNACYE----SNKYALFSDLSQRIAE 672 (675)
Q Consensus 633 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 672 (675)
+++.+.+ +...+..|+..|.. .+++++|.++++++.+
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5555543 44555555555555 5555555555555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=1.1e-05 Score=79.92 Aligned_cols=149 Identities=10% Similarity=-0.012 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044815 472 IHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISG 551 (675)
Q Consensus 472 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 551 (675)
...+..+...+.+.|++++|...|+++++.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5567788888889999999999999988753 44331 223344444433221 1367888889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHH-HHccCCHHH
Q 044815 552 LCKQSKLDEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRK-LCSEKRVGM 627 (675)
Q Consensus 552 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~~~ 627 (675)
|.+.|++++|+..++++++ +.| +...++.++.+|...|++++|...|+++.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 445 456788899999999999999999999765 3355566666665 334667888
Q ss_pred HHHHHHHHhcCCCC
Q 044815 628 AALFFHKLLGKDQN 641 (675)
Q Consensus 628 A~~~~~~~~~~~~~ 641 (675)
+...|++++...|.
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 99999999888775
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=4.6e-05 Score=78.91 Aligned_cols=130 Identities=8% Similarity=0.079 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPT--------------KETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
....+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456788889999999999999999999988543221 578899999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 044815 537 GCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMI-ILESL 603 (675)
Q Consensus 537 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~-~~~~~ 603 (675)
. +.+...|..+..+|...|++++|+..|+++++ +.|+. ..+..+..++.+.|+.++|.+ .+.+|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33577889999999999999999999999998 55644 466778888888888887764 44444
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.03 E-value=1.4e-05 Score=62.88 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCC-CCCHHHHHHHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQ-NVDRVSLAALKNA 653 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~ 653 (675)
...+..++..|.+.|++++|+..|+++.. +.+...|..++.+|.+.|++++|+..|+++++..+ .++......+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 45667777777888888888887777654 33566777777778788888888888877776644 2344555555544
Q ss_pred HHhcC
Q 044815 654 CYESN 658 (675)
Q Consensus 654 ~~~~g 658 (675)
+...+
T Consensus 87 l~~~~ 91 (100)
T 3ma5_A 87 KLKAE 91 (100)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 44443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=5.3e-05 Score=78.26 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=47.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK-----GI-SPCE-VTR 580 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~~-~~~ 580 (675)
..+..+|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|..+++++++- |. .|+. .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3445667777777766665432 11122 235666666677777777777776666531 21 1211 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
+.|+..|...|++++|..++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555555555543
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=2.1e-05 Score=63.71 Aligned_cols=98 Identities=15% Similarity=0.084 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 044815 559 DEACQFYESMIGKGISP-CEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 559 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
++|+..|+++++. .| +...+..++..|...|++++|+..+++... +.+...|..++.+|...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577888888873 34 356777888899999999999999988765 345677888888999999999999999998
Q ss_pred hcCCCC-CCHHHHHHHHHHHHhcC
Q 044815 636 LGKDQN-VDRVSLAALKNACYESN 658 (675)
Q Consensus 636 ~~~~~~-p~~~~~~~l~~~~~~~g 658 (675)
++..+. .+......+...+...+
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhc
Confidence 877653 24445555544444433
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.00026 Score=75.01 Aligned_cols=147 Identities=10% Similarity=-0.040 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044815 522 NISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSK----------LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQ 590 (675)
Q Consensus 522 ~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 590 (675)
..++|++.++++.+. .|+ ...|+.-..++...|+ +++++..++++++...+ +..+|..-.+.+.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 446889999999985 465 5677777777777777 99999999999984322 456778888889999
Q ss_pred C--CHHHHHHHHHHHhh--CCChhhHHHHHHHHHccC-CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------
Q 044815 591 G--DSATAMIILESLDK--KLWIRTVNTLIRKLCSEK-RVGMAALFFHKLLGKDQNVDRVSLAALKNACYES-------- 657 (675)
Q Consensus 591 g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 657 (675)
| +++++++.++++.+ +.+..+|+.-..++.+.| .+++++++++++++.+|. |...|...+.++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 9 77999999999876 357889999999999999 899999999999999999 999999999988874
Q ss_pred ------CchhHHHHHHHHHHh
Q 044815 658 ------NKYALFSDLSQRIAE 672 (675)
Q Consensus 658 ------g~~~~A~~~~~~~~~ 672 (675)
++++++.+.++++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh
Confidence 667999999988875
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=3.9e-05 Score=76.79 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHcc
Q 044815 543 ITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSE 622 (675)
Q Consensus 543 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 622 (675)
..+..+...+.+.|++++|+..|+++++ +.+... .....+++.+ ..+.....|..++.+|.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 3456666667777777777777777665 111100 0001111000 1122456788999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 623 KRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 623 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
|++++|+..++++++.+|. +...+..++.+|...|++++|.+.++++++.
T Consensus 287 g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998 8999999999999999999999999999763
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.95 E-value=1.1e-05 Score=68.21 Aligned_cols=80 Identities=15% Similarity=0.018 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCC----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-
Q 044815 592 DSATAMIILESLDK--KLWIRTVNTLIRKLCSEKR----------VGMAALFFHKLLGKDQNVDRVSLAALKNACYESN- 658 (675)
Q Consensus 592 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 658 (675)
.+++|++.+++... +.+...|..++.++.+.|+ +++|+..|+++++.+|+ +..+|..++.+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcc
Confidence 34444444444332 2244444444444444443 67999999999999999 8999999999999875
Q ss_pred ----------chhHHHHHHHHHHh
Q 044815 659 ----------KYALFSDLSQRIAE 672 (675)
Q Consensus 659 ----------~~~~A~~~~~~~~~ 672 (675)
++++|.+.++++++
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH
Confidence 89999999999986
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=7.5e-05 Score=57.14 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACY 655 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 655 (675)
..+..++..+...|++++|...+++... +.+...|..++..+.+.|++++|+..++++++.+|. +...+..++.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 4556667777777777777777777544 335667778888888889999999999998888887 7888888887776
Q ss_pred hcC
Q 044815 656 ESN 658 (675)
Q Consensus 656 ~~g 658 (675)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00011 Score=75.83 Aligned_cols=127 Identities=7% Similarity=-0.070 Sum_probs=86.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHH
Q 044815 479 IAAFCRQKKMKESEKFFQEAITAG---LFP----TKETYTSMICGYLRDGNISSAVKYFQRMNQI-----GC-APD-NIT 544 (675)
Q Consensus 479 i~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~ 544 (675)
+..+...|++++|..++++.++.. +.+ ...+++.|...|...|++++|..++++..+. |- .|+ ..+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 455677899999999998877531 112 2457888999999999999999999987642 21 233 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 545 YGALISGLCKQSKLDEACQFYESMIGK---GISPCEV----TRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
++.|...|...|++++|+.+++++++- -+-|++. +...+..++...|.+++|..++.++..
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999988751 1123321 223344555556666666666665543
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=3.5e-05 Score=61.70 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=55.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 044815 506 TKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-------EV 578 (675)
Q Consensus 506 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~ 578 (675)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 34556666667777777777777777766642 22456666677777777777777777777776 3343 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIIL 600 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~ 600 (675)
.+..++.++...|+.+.|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3444555555555554444433
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00014 Score=58.65 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESL 603 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 603 (675)
+|+..|++..+.. +.+...+..+...+...|++++|+..|+++++. .|+ ...+..++.+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677788877643 335677888888888999999999999998873 343 456778888889999999999888886
Q ss_pred hh
Q 044815 604 DK 605 (675)
Q Consensus 604 ~~ 605 (675)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.67 E-value=6.8e-05 Score=63.27 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=57.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044815 518 LRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKL----------DEACQFYESMIGKGISPC-EVTRVTLAYE 586 (675)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 586 (675)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++ +.|+ ...++.++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 34455666666666666532 22455666666666665543 355555555555 3343 2344445555
Q ss_pred HHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 587 YCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
|...|.+ .+.+. ...|++++|+++|+++++.+|+ +..
T Consensus 90 y~~lg~l-----------~P~~~----------~a~g~~~eA~~~~~kAl~l~P~-~~~ 126 (158)
T 1zu2_A 90 YTSFAFL-----------TPDET----------EAKHNFDLATQFFQQAVDEQPD-NTH 126 (158)
T ss_dssp HHHHHHH-----------CCCHH----------HHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHhccc-----------Ccchh----------hhhccHHHHHHHHHHHHHhCCC-CHH
Confidence 5444322 00000 0025899999999999999887 543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.54 E-value=0.00031 Score=55.01 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 044815 541 DNITYGALISGLCKQSKLDEACQFYESMIGKGISPC-EVTRVTLAYEYCKQGDSATAMIILESLD 604 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 604 (675)
+...+..+..+|...|++++|+..|+++++. .|+ ...+..++.+|.+.|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666777777777777777777777763 332 3456667777777777777777777654
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.48 E-value=0.0004 Score=52.89 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 609 IRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
...|..++..+...|++++|+..++++++.+|. +...+..++.++...|++++|.+.++++++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456788899999999999999999999999988 8899999999999999999999999998763
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00031 Score=54.71 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=33.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh--CCChh-hHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 583 LAYEYCKQGDSATAMIILESLDK--KLWIR-TVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 583 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+..+.+.|++++|...++++.+ +.+.. .|..++.++...|++++|+..|+++++.+|.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34445555666666665555433 22344 5556666666666666666666666666655
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.00062 Score=52.17 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 576 CEVTRVTLAYEYCKQGD---SATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 576 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
+...+..++.++...++ .++|..++++..+ +.+...+..++..+.+.|++++|+.+|+++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44556666666654443 5777777777654 345666777777777788888888888887777664
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.30 E-value=0.00074 Score=68.48 Aligned_cols=83 Identities=11% Similarity=-0.110 Sum_probs=45.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCC---hhhHHHHH
Q 044815 554 KQSKLDEACQFYESMIGK---GISPCE----VTRVTLAYEYCKQGDSATAMIILESLDK-------KLW---IRTVNTLI 616 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~---~~~~~~l~ 616 (675)
..|++++|+.++++.++. -+.|++ .+++.|+.+|...|++++|..++++... +.. ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567888888888887652 222332 3445566666666666666666665432 011 22345555
Q ss_pred HHHHccCCHHHHHHHHHHHh
Q 044815 617 RKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~ 636 (675)
..|...|++++|+.+|++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 55555555555555555543
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.24 E-value=0.0047 Score=51.44 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhCC----ChhhHHHHHHHHHccCCHHHHHH
Q 044815 558 LDEACQFYESMIGKGISPCEVTRVTLAYEYCKQG---DSATAMIILESLDKKL----WIRTVNTLIRKLCSEKRVGMAAL 630 (675)
Q Consensus 558 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~ 630 (675)
...+.+-|.+..+.|. ++..+...+++++++.+ +.++++.+++.+.+.. ....+..+.-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555665555544 46667777777777776 5557777777765532 23445667777788888888888
Q ss_pred HHHHHhcCCCCCCHH
Q 044815 631 FFHKLLGKDQNVDRV 645 (675)
Q Consensus 631 ~~~~~~~~~~~p~~~ 645 (675)
+++++++..|. |..
T Consensus 93 y~~~lL~ieP~-n~Q 106 (152)
T 1pc2_A 93 YVRGLLQTEPQ-NNQ 106 (152)
T ss_dssp HHHHHHHHCTT-CHH
T ss_pred HHHHHHhcCCC-CHH
Confidence 88888888776 543
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.14 E-value=0.00098 Score=51.77 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=53.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 044815 614 TLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV-SLAALKNACYESNKYALFSDLSQRIAEG 673 (675)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 673 (675)
..+..+.+.|++++|+..|+++++.+|. +.. .+..++.++...|++++|.+.++++++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3566788999999999999999999998 888 9999999999999999999999998863
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.004 Score=63.19 Aligned_cols=91 Identities=9% Similarity=-0.069 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CCC---h
Q 044815 547 ALISGLCKQSKLDEACQFYESMIGK---GISPCE----VTRVTLAYEYCKQGDSATAMIILESLDK-------KLW---I 609 (675)
Q Consensus 547 ~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~---~ 609 (675)
..+..+...|++++|+.++++.++. -+.|++ .+++.|+..|...|++++|+.+++++.. +.. .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 4455667788999999999888853 122332 3456677777777888887777776543 111 2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhc
Q 044815 610 RTVNTLIRKLCSEKRVGMAALFFHKLLG 637 (675)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (675)
.+++.|+..|...|++++|+.+++++++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3466677777777777777777776654
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.002 Score=65.27 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=68.9
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHH
Q 044815 519 RDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK-----GI-SPCE-VTRVTLA 584 (675)
Q Consensus 519 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~~-~~~~~l~ 584 (675)
..|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++++- |. .|+. .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 578999999999987652 22343 357899999999999999999999998852 32 2333 4668899
Q ss_pred HHHHHcCCHHHHHHHHHHHhh
Q 044815 585 YEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..|...|++++|..++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.035 Score=62.05 Aligned_cols=135 Identities=12% Similarity=0.062 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044815 482 FCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEA 561 (675)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 561 (675)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 34557777777764322 4567777778888888888888887777643 33444455556666665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 562 CQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 562 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.++-+.+...|. +.....+|.+.|++++|.+++. +.+++++|..+.++ .++
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~-------------------~~~~~~~A~~lA~~---~~~- 777 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI-------------------KSQRFSEAAFLGST---YGL- 777 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH-------------------HTTCHHHHHHHHHH---TTC-
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH-------------------HcCChHHHHHHHHH---hCC-
Confidence 555555544331 1122234555666666655444 44566666665554 222
Q ss_pred CCH----HHHHHHHHHHHhcCchh
Q 044815 642 VDR----VSLAALKNACYESNKYA 661 (675)
Q Consensus 642 p~~----~~~~~l~~~~~~~g~~~ 661 (675)
.. .....+...+...|+.+
T Consensus 778 -~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 778 -GDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred -ChHHHHHHHHHHHHHHHhccchh
Confidence 23 34444455555566543
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.91 E-value=0.027 Score=54.74 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRV 581 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 581 (675)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++.. +.|...++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 456666666666666677777777777777753 6666666667777777777777777777777 556655543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.87 E-value=0.0062 Score=61.78 Aligned_cols=97 Identities=12% Similarity=-0.031 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQI---GCAPD----NITYGALISGLCKQSKLDEACQFYESMIGK-----G-ISP 575 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p 575 (675)
.....+..+.+.|++++|+.++++..+. -+.|+ ..+++.++.+|...|++++|+.+++++++- | ..|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344456677899999999999998753 12333 347889999999999999999999998752 2 123
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 576 CE-VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 576 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
+. .+++.|+..|...|++++|..++++...
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 32 4567899999999999999998887654
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.87 E-value=0.0024 Score=53.13 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhh--CCChhhHHHHHHHHHccC---CHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCchhHHHHH
Q 044815 593 SATAMIILESLDK--KLWIRTVNTLIRKLCSEK---RVGMAALFFHKLLGKD-QNVDRVSLAALKNACYESNKYALFSDL 666 (675)
Q Consensus 593 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 666 (675)
+..+.+.|.+... .++..+...+++++++.+ +.++++.+++..++.+ |.-+..++..|+.+|++.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3445555555443 456778888999999988 6679999999999987 522577899999999999999999999
Q ss_pred HHHHHh
Q 044815 667 SQRIAE 672 (675)
Q Consensus 667 ~~~~~~ 672 (675)
++++++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999986
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.79 E-value=0.012 Score=46.17 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---------CChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHH
Q 044815 577 EVTRVTLAYEYCKQGDSATAMIILESLDKK---------LWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSL 647 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 647 (675)
...+..++..+.+.|+++.|...++...+. .....+..++.++.+.|++++|+.+++++++..|. +....
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 445566677777777777777777665431 12456778888888888888888888888888887 66655
Q ss_pred HHHH
Q 044815 648 AALK 651 (675)
Q Consensus 648 ~~l~ 651 (675)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.057 Score=60.24 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 448 LKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEA 498 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (675)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455566555553221 24556666666666666666666666554
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.028 Score=54.62 Aligned_cols=65 Identities=11% Similarity=-0.164 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKE 396 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (675)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444444444444455555555555555542 44444444445555555555555555555443
No 223
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.62 E-value=1.2 Score=49.08 Aligned_cols=263 Identities=11% Similarity=0.049 Sum_probs=128.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--C-----CCHHHHHHHHHH
Q 044815 341 GYCKEEKMNRAEMLLERMKEQGLLPNTN--TYTSLIYGHCKVGNFERAYDLMDLMGKEGC--T-----PNIYAYNAIIDG 411 (675)
Q Consensus 341 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----~~~~~~~~li~~ 411 (675)
+....|+.++++.++......+-..+.. .=..+.-+....|..+++..++.......- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455677777777766654321112222 222333334445554566766666554310 0 111122233333
Q ss_pred HHhcCC-HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcC
Q 044815 412 LCKKGR-VQEAYELLKKAFQRELQADK--ITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLI--AAFCRQK 486 (675)
Q Consensus 412 ~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g 486 (675)
++-.|. -+++.+.+..++.... ... ..-..+...++..|+.+-...++..+.+.. +......+. -++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2455666666554321 111 112233344556677777777777666532 333333333 3344668
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044815 487 KMKESEKFFQEAITAGLFPTKETY--TSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQF 564 (675)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 564 (675)
+.+.+..+.+.+.... .|....- .++..+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888877776631 1222211 133445667778766666777776531 11222222223334446666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhCCChh
Q 044815 565 YESMIGKGISPCEVTRVTLAYEYCKQGDS-ATAMIILESLDKKLWIR 610 (675)
Q Consensus 565 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~ 610 (675)
++.+.+.+ .|...--..++.+....|.. .+|...+..+...++..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 66665543 23222222334444444443 56777888877655543
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.55 E-value=0.077 Score=49.33 Aligned_cols=149 Identities=12% Similarity=0.032 Sum_probs=98.7
Q ss_pred HHHHHHHHHc-CCHHHHHHH-----HHHHHHCCCCCC---HHHHHHHHHH-HHhc--C------CHHHHHHHHHHHHhCC
Q 044815 511 TSMICGYLRD-GNISSAVKY-----FQRMNQIGCAPD---NITYGALISG-LCKQ--S------KLDEACQFYESMIGKG 572 (675)
Q Consensus 511 ~~li~~~~~~-g~~~~A~~~-----~~~m~~~~~~p~---~~~~~~l~~~-~~~~--g------~~~~A~~~~~~~~~~g 572 (675)
...+.+++.. ..+.++++- +...... +.|+ ...|..++.+ +... | ...+|...+++.++
T Consensus 115 ~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle-- 191 (301)
T 3u64_A 115 RYALSSLETAYPGFTREVFSGDEQRLHKVLSR-CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD-- 191 (301)
T ss_dssp HHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTT-CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCccHHHHHHhcchhhHHHHHHH-cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--
Confidence 3455555543 555544432 2333332 3343 3356655553 3332 3 25678888888888
Q ss_pred CCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHhh-CC--ChhhHHHHHHHHHcc-CCHHHHHHHHHHHhcCCC
Q 044815 573 ISPC---EVTRVTLAYEYCKQ-----GDSATAMIILESLDK-KL--WIRTVNTLIRKLCSE-KRVGMAALFFHKLLGKDQ 640 (675)
Q Consensus 573 ~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 640 (675)
+.|+ ...+..++..|.+. |+.++|.+.|++... .| ++.++..++..++.. |+.++|.+++++++..++
T Consensus 192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 6676 35677788888884 999999999999765 33 377888888988884 899999999999999988
Q ss_pred C--CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 641 N--VDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 641 ~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
. |+....+. +.-++|..+++++
T Consensus 272 ~~~P~~~lan~--------~~q~eA~~LL~~~ 295 (301)
T 3u64_A 272 ESVPHNKLLVI--------LSQKRARWLKAHV 295 (301)
T ss_dssp GGCSSCHHHHH--------HHHHHHHHHHHTH
T ss_pred CCCCChhHHHH--------HHHHHHHHHHHHh
Confidence 8 77544333 3345777666654
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.019 Score=43.68 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 541 DNITYGALISGLCKQSK---LDEACQFYESMIGKGISPCE-VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
|...+..+..++...++ .++|..++++.++ ..|+. .....++..+.+.|++++|+..|+++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 4555555555555 33322 3334445555555555555555555443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.51 E-value=0.026 Score=52.42 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHc-C
Q 044815 523 ISSAVKYFQRMNQIGCAPD---NITYGALISGLCKQ-----SKLDEACQFYESMIGKGISPC--EVTRVTLAYEYCKQ-G 591 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~-g 591 (675)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++.++ +.|+ ..+++..+..|+.. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5678888899888 4677 45889999889884 999999999999999 6663 67778888989885 9
Q ss_pred CHHHHHHHHHHHhh
Q 044815 592 DSATAMIILESLDK 605 (675)
Q Consensus 592 ~~~~A~~~~~~~~~ 605 (675)
+.++|.+.+++...
T Consensus 255 d~~~a~~~L~kAL~ 268 (301)
T 3u64_A 255 NRAGFDEALDRALA 268 (301)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 99999999999876
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.34 E-value=1.7 Score=47.79 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=119.6
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHh
Q 044815 379 KVGNFERAYDLMDLMGKEGCTPN--IYAYNAIIDGLCKKGRVQEAYELLKKAFQREL-------QADKITYTILLSEHLK 449 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~~~~ 449 (675)
..|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++...+...- .+....-.++.-++.-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 34555555555554433110112 22333344455556665667777766554321 0111111222223332
Q ss_pred cCC-HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH--HHHHcCCHH
Q 044815 450 QAE-TKQALGLFCRMVKAGLNPDIH--AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMIC--GYLRDGNIS 524 (675)
Q Consensus 450 ~~~-~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~ 524 (675)
.|. -+++.+.+..+.... .+... .-.+|...++..|+-+....++..+.+. .+..+...+.. ++...|+.+
T Consensus 466 ~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGG
T ss_pred cCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChH
Confidence 232 245555555555432 11111 1122333344567777777777766653 23333333333 344667777
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAPDNI-TYG---ALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVT--LAYEYCKQGDSATAMI 598 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~~~-~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~--l~~~~~~~g~~~~A~~ 598 (675)
.+..+++.+... .+.. -|. .+.-+|+..|+.....++++.+.+. ++..+... ++.++...|+.+.+.+
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 777777777652 2322 222 2334566777776666677777763 22222222 3334445666666666
Q ss_pred HHHHHhhCCChhhH--HHHHHHHHccCCH-HHHHHHHHHHhc
Q 044815 599 ILESLDKKLWIRTV--NTLIRKLCSEKRV-GMAALFFHKLLG 637 (675)
Q Consensus 599 ~~~~~~~~~~~~~~--~~l~~~~~~~g~~-~~A~~~~~~~~~ 637 (675)
+++.+.+..+..+- ..+.-+....|+. .+|+..+.++..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77666554443332 2233333334433 567777777753
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.27 E-value=0.017 Score=45.13 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 609 IRTVNTLIRKLCSEKRVGMAALFFHKLLGKD------QNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
...+..++..+.+.|+++.|...|+++++.. ..+....+..|+.++.+.|++++|..+++++++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445678999999999999999999988742 123577899999999999999999999999875
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.07 E-value=0.025 Score=45.23 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhCCC----hhhHHHHHHHHHc
Q 044815 549 ISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSAT---AMIILESLDKKLW----IRTVNTLIRKLCS 621 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~----~~~~~~l~~~~~~ 621 (675)
+..-........+.+-|.+....|. |+..+...+++++.+..+.++ ++.+++.+.+... ......++-++.+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333444556667777777766554 677888889999999887766 8888888776542 2334667788999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVS 646 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~ 646 (675)
.|++++|+++++.+++..|. |...
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~-n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQ-NNQA 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 99999999999999999987 6443
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.07 E-value=0.057 Score=43.15 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=59.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHH
Q 044815 515 CGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDE---ACQFYESMIGKGISP--CEVTRVTLAYEYCK 589 (675)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~ 589 (675)
...........+.+-|.+....| .++..+--.+..++.+..+..+ ++.+++.+.+.+ .| .....+.|+-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 33334444555666666665544 3666666667778888776665 788888887753 13 23455678888888
Q ss_pred cCCHHHHHHHHHHHhh
Q 044815 590 QGDSATAMIILESLDK 605 (675)
Q Consensus 590 ~g~~~~A~~~~~~~~~ 605 (675)
.|++++|.+.++.+.+
T Consensus 87 lg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ 102 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888888888888655
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.80 E-value=0.56 Score=37.50 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 044815 616 IRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAE 672 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 672 (675)
+..+...|+-|+-.+++..++. +..|++..+..++.+|.+.|+..+|.+++.++.+
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344445555554445444333 2223455555555555555555555555555544
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.54 E-value=0.32 Score=39.85 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCH------HHHHHHHH-HHHHcCCHHHHHHHHHHHhh--
Q 044815 541 DNITYGALISGLCKQSKL------DEACQFYESMIGKGISPCE------VTRVTLAY-EYCKQGDSATAMIILESLDK-- 605 (675)
Q Consensus 541 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-- 605 (675)
|..+|-..+...-+.|++ ++.+++|+++... ++|+. .++..+-. .+...++.++|.++|+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 456666666666666777 7777778777653 44432 11111111 12345788888888888754
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 044815 606 KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKN 652 (675)
Q Consensus 606 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 652 (675)
+.....|...+..-.+.|+++.|.+++.+++..+++| ...+.+.+.
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 2335667777777788999999999999999999984 455554443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.97 Score=38.57 Aligned_cols=101 Identities=12% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044815 305 GLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFE 384 (675)
Q Consensus 305 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 384 (675)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 344566666666665443 3455666666666666776666666666543 233344455556665
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044815 385 RAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKK 427 (675)
Q Consensus 385 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 427 (675)
+-.++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555544444443 123333444455666666666544
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.46 E-value=1.1 Score=38.33 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 413 CKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESE 492 (675)
Q Consensus 413 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 492 (675)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4455555555554443 2344555555555555555555555544421 222333333344444444
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 493 KFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQ 531 (675)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 531 (675)
++-+.....| -++.....+...|++++++++|.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 4333333322 12333334444555555555553
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.36 E-value=0.84 Score=36.54 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
|.+++..++..+.... .+..-||.+|--....-+.+-..++++.+-+-. |. ...|++......
T Consensus 21 G~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHHHHHH
T ss_pred hhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHHHHHH
Confidence 6677777777776654 245555555555555555555555555543221 11 122333333333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044815 355 LERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQREL 433 (675)
Q Consensus 355 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 433 (675)
+-.+- .+...+...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-++|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32221 12333444555666667767666666665432 256666666677777777777777777777666654
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.21 E-value=5e-05 Score=74.83 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 044815 330 PNVHTYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAYDLMDLMGKEGCTPNIYAYNAII 409 (675)
Q Consensus 330 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 409 (675)
.+..||-.+-.+|...+.+.-|.-.--.++-. +| -...++..|-..|-+++-+.+++.-.... ......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 46678888888888888877766554444321 11 12335667888888888888888766322 35677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 044815 410 DGLCKKGRVQEAYELLKKAFQR-ELQA------DKITYTILLSEHLKQAETKQAL 457 (675)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~~~~~~A~ 457 (675)
-.|++- +.++..+.++....+ +++. ....|.-++-.|++-.+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 887775 455555555443322 1111 1223555555555555555543
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.37 E-value=0.18 Score=40.96 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhhC-C--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 572 GISPCEVTRVTLAYEYCKQGDSA---TAMIILESLDKK-L--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 572 g~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+-.|+..+...+++++.+..+.+ +++.+++.+.+. + .......+.-++.+.|++++|+++.+.+++..|. |..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~Q 112 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 112 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHH
Confidence 34577888889999999988665 577788887653 2 2334567788899999999999999999999998 644
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.29 E-value=5.1 Score=40.48 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HH
Q 044815 371 TSLIYGHCKVGNFERAYDLMDLMGKE--GCTPN---IYAYNAIIDGLCKKGRVQEAYELLKKAFQ----RELQADK--IT 439 (675)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~ 439 (675)
..|...|...|++.+|..++..+... |.... ...+...++.|...+++..|..+++++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566666677777777777665431 21111 23455556666667777777766666432 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 440 YTILLSEHLKQAETKQALGLFCRMV 464 (675)
Q Consensus 440 ~~~li~~~~~~~~~~~A~~~~~~m~ 464 (675)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455556666666666666665554
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.51 Score=50.80 Aligned_cols=52 Identities=10% Similarity=-0.098 Sum_probs=43.2
Q ss_pred HHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 617 RKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
..|...|+++-|+++.+++...-|. +..+|..|+.+|...|+|+.|+-.++-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4456688888899988888888887 888999999999999999888877664
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.84 E-value=0.2 Score=40.18 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhhC-C--ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHH
Q 044815 572 GISPCEVTRVTLAYEYCKQGDSA---TAMIILESLDKK-L--WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 572 g~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 645 (675)
+-.|+..+-..+++++.+..+.+ +++.+++.+.+. + ....+..++-++.+.|++++|+++.+.+++..|. |..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~-N~Q 113 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQ 113 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT-CHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-CHH
Confidence 45577788888999999988664 577788877653 2 2345677888899999999999999999999998 654
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.81 E-value=0.54 Score=38.56 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044815 486 KKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIG 537 (675)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 537 (675)
+++++|.++|+.++...-.- ...|.....--.++|+.+.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44444444444443321111 3334334444444555555555555544443
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.38 E-value=5.6 Score=37.88 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=108.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHH
Q 044815 137 IVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMV----IEMTNNGLPLITSTLNRVVGIACELGLVEY-AEEVF 211 (675)
Q Consensus 137 ~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~ 211 (675)
-.+...+.+.+++++|.+++..-...+.+.|+...|.++. +-..+.+++++......|+..+.....-+- =..+.
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi 118 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFV 118 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 3555667889999999999999899999999998887776 444567888999888888888876654221 12233
Q ss_pred HHHh----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 044815 212 DEMC----ARG--VCADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELLE 285 (675)
Q Consensus 212 ~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 285 (675)
+++. +.| ..-|+.....+...|.+.+++.+|..-|- .|-.+....|..++..|...+ + .
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~--~-~-------- 183 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD--E-S-------- 183 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS--C-G--------
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc--C-C--------
Confidence 3332 222 22367777788889999999999887763 233333466766666665542 1 0
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 286 EMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.+++...-..++ -|.-.+++..|..+|+...+
T Consensus 184 ------~e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ------HTAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------GGHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------ccHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 012233333333 45567888888887766553
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.03 E-value=1.3 Score=51.20 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=98.9
Q ss_pred HHHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044815 102 TVVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTN 181 (675)
Q Consensus 102 ~v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 181 (675)
.++..+...+.+..+..+..|....+ ..-...|.++...|++++|.+.|.....+............-+..+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~------~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDP------IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCH------HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCc------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34445555566677777777765432 122466778888888888887776543322221111111111122221
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCC
Q 044815 182 NG--LPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCADA----SSYKLMVVAYCRMGRVTEADRWLSAMLDRGAI 255 (675)
Q Consensus 182 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 255 (675)
.. ...-..-|..++..+-+.|.++.+.++-....+...+.+. ..|..+.......|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 11 1122345778888899999999998887776653222222 2578888999999999999999888876543
Q ss_pred CCHHHHHHHHHHHHhc
Q 044815 256 LDNATLTLLITAFCDK 271 (675)
Q Consensus 256 ~~~~~~~~ll~~~~~~ 271 (675)
-......++..+|..
T Consensus 970 -r~~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQ 984 (1139)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhC
Confidence 456667777777765
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.80 E-value=8.8 Score=36.28 Aligned_cols=170 Identities=13% Similarity=0.018 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHH
Q 044815 136 YIVCATSLISNGNFERAHEVMQCMVSSFAEIGRLKEGFSM----VIEMTNNGLPLITSTLNRVVGIACELGLVE-YAEEV 210 (675)
Q Consensus 136 y~~~~~~l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 210 (675)
|-.+...+.+.+++++|.+++..-...+.+.|+...|.++ ++-..+.+++++......++..+.....-+ .=.++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~f 115 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDV 115 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHH
Confidence 3355666788999999999999989999999998888776 444556788999988888888876643222 12233
Q ss_pred HHHHh----hCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 044815 211 FDEMC----ARGV--CADASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGFRGSIKQAFELL 284 (675)
Q Consensus 211 ~~~~~----~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 284 (675)
.+++. +.|- .-|+.....+...|.+.|++.+|..-|-. |-.-+...+..++..+......|...+
T Consensus 116 i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e----- 186 (312)
T 2wpv_A 116 ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDST----- 186 (312)
T ss_dssp HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcch-----
Confidence 33333 2221 23778888888999999999998876642 111134455555554444200011111
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 285 EEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 324 (675)
.+...-.. +-.|.-.|+...|..+|+...+
T Consensus 187 ---------~dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 187 ---------VAEFFSRL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ---------HHHHHHHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 12222222 2335567889998888887653
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.66 E-value=0.54 Score=35.29 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 624 RVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 624 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
+.=+..+-++.+...+.-|++....+.+.+|.+.+++.-|.++++.+..|||
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~ 76 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 76 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4446677777888888888999999999999999999999999998888876
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.54 E-value=3.1 Score=33.80 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 044815 255 ILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSD 326 (675)
Q Consensus 255 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 326 (675)
.|+..+--.+..++.+.....+..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 455555555555666654445666777788877765433233444556677888888888888888877743
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.52 E-value=9.5 Score=36.07 Aligned_cols=113 Identities=10% Similarity=0.067 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 044815 474 AYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKY----FQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 474 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~ 549 (675)
.|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.++ ++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555666667777777776654332 23444554444433 33344456666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044815 550 SGLCKQSKLD-EACQFYESMI----GKG--ISPCEVTRVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 550 ~~~~~~g~~~-~A~~~~~~~~----~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
..+..-..-+ .=.++.++++ +.| ..-++..+..++..|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6554422111 1233444443 222 12255667777888888888888777554
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.46 E-value=1.5 Score=35.14 Aligned_cols=72 Identities=11% Similarity=-0.044 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 044815 254 AILDNATLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRS 325 (675)
Q Consensus 254 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 325 (675)
..|+..+--.+..++.+.....+..+++.+++++.+.+..-....+--|.-++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345555555555555565444466677777777776543223444555667788888888888888777764
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.40 E-value=16 Score=36.79 Aligned_cols=189 Identities=12% Similarity=0.136 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH----Hhc
Q 044815 310 GWTEKAFRLFLKLVRS----DNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ-GLLPNTNTYTSLIYGH----CKV 380 (675)
Q Consensus 310 g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~----~~~ 380 (675)
|+++.|++.+..+.+. ............++..|...++++...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6677777766555432 222334555667777777777777776666555432 322222 22222222 122
Q ss_pred CCHHHH--HHHHHHHhh--cC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHH
Q 044815 381 GNFERA--YDLMDLMGK--EG-CTPN---IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA-D----KITYTILLSEH 447 (675)
Q Consensus 381 g~~~~A--~~~~~~m~~--~g-~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~ 447 (675)
...+.. ..+.+.... .| +... ......|...|...|++.+|.+++.++...-... + ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221111 111111100 01 1111 1222345555666666666666666654221111 1 12344445555
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 044815 448 LKQAETKQALGLFCRMVK----AGLNPD--IHAYTTLIAAFCRQKKMKESEKFFQEAIT 500 (675)
Q Consensus 448 ~~~~~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 500 (675)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556666666655555432 111111 12334444455555555555555555543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.28 E-value=3.8 Score=40.58 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHH
Q 044815 155 VMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCA-----RGVCADASS 225 (675)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 225 (675)
....++..+...|++++|+..+..+.... |.+...+..++.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33445556666677777776666665553 55666666777777777777777766666543 355555543
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.26 E-value=13 Score=35.44 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044815 435 ADKITYTILLSEHLKQAETKQALGLF 460 (675)
Q Consensus 435 ~~~~~~~~li~~~~~~~~~~~A~~~~ 460 (675)
-|+.....+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555555666666666666665544
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.07 E-value=2.1 Score=46.15 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=15.1
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHc
Q 044815 442 ILLSEHLKQAE-TKQALGLFCRMVKA 466 (675)
Q Consensus 442 ~li~~~~~~~~-~~~A~~~~~~m~~~ 466 (675)
.++..+...++ .+.|+.+++++.+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~ 278 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK 278 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh
Confidence 34444444444 56777777777765
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.49 E-value=1.9 Score=36.06 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 578 VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 578 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
..-+.++.+|.+.|+.++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3445566677777777777777776644
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.09 E-value=1.2 Score=44.38 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHh-----cCCCCCCHHHHHHHH
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLL-----GKDQNVDRVSLAALK 651 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l~ 651 (675)
....++..+...|+.++|...++.+.. +.+...|..++.+|.+.|+..+|++.|+++. +.|..|.+.+-...-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344566777888888888888877654 3366678888888888888888888888764 358888877665554
Q ss_pred HHH
Q 044815 652 NAC 654 (675)
Q Consensus 652 ~~~ 654 (675)
.++
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.08 E-value=11 Score=43.39 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------C
Q 044815 443 LLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITA--------------------G 502 (675)
Q Consensus 443 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------~ 502 (675)
++..+...+..+-+.++.... +.+...--.+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555444433221 223333334555566666777776666554210 0
Q ss_pred --CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 503 --LFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDN----ITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 503 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
...-..-|..++..+.+.+.++.++++-+...+..-..+. ..|..+..++...|++++|...+-.+-+...+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 0011233555666666667777776666655543211111 14566666677777777776666666553332
Q ss_pred HHHHHHHHHHHHHcCCH
Q 044815 577 EVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 577 ~~~~~~l~~~~~~~g~~ 593 (675)
......|+..+|..|..
T Consensus 971 ~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 34445555555555443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.20 E-value=1.6 Score=34.70 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHhccC
Q 044815 625 VGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRIAEGIG 675 (675)
Q Consensus 625 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 675 (675)
.=+..+-++.+...+.-|++....+.+.+|.+.+|+.-|.++++.+..|||
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~ 119 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 119 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 334566677777888888999999999999999999999999998888876
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.05 E-value=4e-05 Score=75.51 Aligned_cols=239 Identities=13% Similarity=0.101 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044815 404 AYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFC 483 (675)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 483 (675)
+|..|..++.+.+++.+|++.|-+ ..|+..|..++.+..+.|.+++-+.++...++..-.| ..=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 344555555555555555443311 1233445555555555555555555554444332222 22234555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------CCCCCCHH
Q 044815 484 RQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQ--------------------IGCAPDNI 543 (675)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------~~~~p~~~ 543 (675)
+.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+.. ..-..+..
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 5555544333221 13444444444555555555544444433211 01123556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHc
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCS 621 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 621 (675)
||..+-.+|...+.+.-|...--.++-. || ....++..|...|-+++-+.+++.-.. +.....++-|+-.|++
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 8888888999999888776654444421 22 122356678889999999999988654 3466778888888877
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 622 EKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
- +.++-++.++.... .++. -.++++|-+..-|.++.=++.+
T Consensus 276 Y-~PeKlmEHlklf~s-riNi-----pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 276 F-KPQKMREHLELFWS-RVNI-----PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp S-CTTHHHHHHTTSSS-SSCC-----TTTHHHHTTTTCHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHH-hccH-----HHHHHHHHHHhhHHHHHHHHhc
Confidence 5 45555555443222 1111 1367789999999888876654
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.07 E-value=5.4 Score=33.40 Aligned_cols=122 Identities=7% Similarity=-0.104 Sum_probs=64.3
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 044815 536 IGCAPDNIT--YGALISGLCKQSKLDEACQFYESMIGK-GISPCE-------VTRVTLAYEYCKQGDSATAMIILESLDK 605 (675)
Q Consensus 536 ~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 605 (675)
.|+.|.... +-.-+..+...|.++.|+-+.+.++.. +..|+. .++..+++++...|++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355555443 344566678888999988888876532 112221 2456678888889999988888888543
Q ss_pred C----C-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 044815 606 K----L-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 606 ~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
. + .......+. -...... ..+...+...-..++.+|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 0 110110110 0000000 0011124455566888888888888888888765
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.22 E-value=11 Score=28.38 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 528 KYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESM 568 (675)
Q Consensus 528 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 568 (675)
+-++.+....+.|++....+.+++|.+.+++..|.++++-.
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444433
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.57 E-value=4.7 Score=36.87 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHcCCHHHHHHHHHHH-hhCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCC
Q 044815 586 EYCKQGDSATAMIILESL-DKKL-WIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQN 641 (675)
Q Consensus 586 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 641 (675)
.+.+.|++++|+..+..- ...| +...-..++..||-.|+++.|.+-++.+.+.+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 456778888888866654 4444 5555667888888888888888888888887775
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.24 E-value=72 Score=33.58 Aligned_cols=202 Identities=11% Similarity=0.062 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 044815 451 AETKQALGLFCRMVKAGLNPDIHAYTTLIA----AFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSA 526 (675)
Q Consensus 451 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 526 (675)
.+.+.|...+....+.. ..+......+-. .+...+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998887543 223333322222 2233443556666776655432 4444444555555678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 044815 527 VKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKK 606 (675)
Q Consensus 527 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 606 (675)
...|+.|..... ......--+..++...|+.++|..+|+.+... . +|+.++ +..+.|..-.. .. ......
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~l-Aa~~Lg~~~~~-~~-~~~~~~ 374 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMV-AAQRIGEEYEL-KI-DKAPQN 374 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHH-HHHHTTCCCCC-CC-CCCCSC
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHH-HHHHcCCCCCC-CC-CCCChh
Confidence 999998865321 12333334566778889999999999998752 2 344332 22233321000 00 000000
Q ss_pred CC-h---hhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 044815 607 LW-I---RTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYESNKYALFSDLSQ 668 (675)
Q Consensus 607 ~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 668 (675)
.. . ..--.-+..+...|...+|...+..+.+.. +......++......|.++.+.....
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~---~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 00 0 011223456778899999999888877642 34444566666777777777665443
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.30 E-value=81 Score=33.18 Aligned_cols=118 Identities=13% Similarity=0.031 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044815 310 GWTEKAFRLFLKLVRSDNYKPNVH--TYTAMISGYCKEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGNFERAY 387 (675)
Q Consensus 310 g~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 387 (675)
.+.+.|...|....+.....+... .+..+...+...+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 377888888887755443322211 12222222333443556666666655432 33333333334445679999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044815 388 DLMDLMGKEGCTPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQ 430 (675)
Q Consensus 388 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 430 (675)
..|+.|.... ........-+.+++.+.|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998886532 12345555677788888999999999988764
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.10 E-value=18 Score=28.87 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044815 492 EKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRM 533 (675)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 533 (675)
.+-++.+...++.|++.+..+.+.+|-+.+++.-|.++|+-+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444433
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.65 E-value=45 Score=33.32 Aligned_cols=63 Identities=10% Similarity=-0.016 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhH
Q 044815 189 STLNRVVGIACELGLVEYAEEVFDEMCAR--GVCADASSYKLMVVAYCRMGRVTEADRWLSAMLD 251 (675)
Q Consensus 189 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 251 (675)
.+...+...|.+.|+++.|.+.|.++... +...-...+-..|+.+...+++..+...+.+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45677888888999999999999888763 2233455667778888888888888888877643
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.45 E-value=31 Score=31.56 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=64.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHHcCCH
Q 044815 446 EHLKQAETKQALGLFCRMVKAGLNPDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLF--PTKETYTSMICGYLRDGNI 523 (675)
Q Consensus 446 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 523 (675)
.+.+.|+.++++.....-++.. +-|...-..|++.+|-.|+++.|.+-++...+.... |....|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 4566777778777777777664 557777777888888888888888877777764311 1122333333321
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 044815 524 SSAVKYFQRMNQIGCAP-----DNITYGALISGL--CKQSKLDEACQFYESMIG 570 (675)
Q Consensus 524 ~~A~~~~~~m~~~~~~p-----~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 570 (675)
..=.++..-+-.| ...-...++.+. ...|+.++|.++-.++.+
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111222111111 122333444443 345788888887777765
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.93 E-value=50 Score=32.98 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCCHHHH--HH
Q 044815 335 YTAMISGYCKEEKMNRAEMLLERMKEQGLL--PNTNTYTSLIYGHCKVGNFERAYDLMDLMGK---EGCTPNIYAY--NA 407 (675)
Q Consensus 335 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~--~~ 407 (675)
...+...|.+.|++++|.+.|.++...... --...+..++..+...+++..+...+.++.. .+..++.... ..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 334444444555555555555554432111 1233445555555556666666655555432 1212221110 01
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044815 408 IIDGLCKKGRVQEAYELLKKAFQ 430 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~~~ 430 (675)
-+..+...+++..|...|-+...
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhc
Confidence 11223345667777776666554
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.15 E-value=30 Score=25.91 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
...++|..+-+-+...+. ...+--.-+..+...|++++|..+.+. .+.||...|-.|... +.|.-+++..-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~-----~c~pdlepw~ALce~--rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHG-----NPWPALEPWFALCEW--HLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTT-----CCCGGGHHHHHHHHH--HTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC-----CCCchHHHHHHHHHH--hcccHHHHHHH
Confidence 466677666666665532 111111223345667777777665432 235777776665443 56666666666
Q ss_pred HHHHHHcC
Q 044815 355 LERMKEQG 362 (675)
Q Consensus 355 ~~~m~~~g 362 (675)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 65665543
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.60 E-value=31 Score=25.87 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044815 275 GSIKQAFELLEEMVRKGWKPNVYTHTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEML 354 (675)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 354 (675)
...++|..+-+-+...+. ...+--.-+..+...|++++|..+.+.. +.||...|-.|... +.|.-+++..-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHHH--hcccHHHHHHH
Confidence 456666666666555432 1111111223455666666666554322 35666666555443 44555555555
Q ss_pred HHHHHHc
Q 044815 355 LERMKEQ 361 (675)
Q Consensus 355 ~~~m~~~ 361 (675)
+.++..+
T Consensus 92 L~~la~s 98 (116)
T 2p58_C 92 LNRLARS 98 (116)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 5555444
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.10 E-value=47 Score=27.33 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=22.6
Q ss_pred HHHHHHHHhHCCCCCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCC
Q 044815 242 ADRWLSAMLDRGAILDNA-TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKP 294 (675)
Q Consensus 242 A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (675)
+.++|..|...|+-.... .|......+... |++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~---g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQ---GELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcc
Confidence 455555555554433322 233333333332 45555555555555544444
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.32 E-value=45 Score=28.91 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 381 GNFERAYDLMDLMGKEGCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA 435 (675)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 435 (675)
+....+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346677777777776665433 4556667777777777777777777777666555
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.50 E-value=53 Score=31.65 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 044815 370 YTSLIYGHCKVGNFERAYDLMDLMG 394 (675)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~ 394 (675)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4566667777777777777776654
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.47 E-value=71 Score=27.67 Aligned_cols=18 Identities=17% Similarity=-0.079 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 044815 540 PDNITYGALISGLCKQSK 557 (675)
Q Consensus 540 p~~~~~~~l~~~~~~~g~ 557 (675)
++...-...+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 333333333444444433
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.99 E-value=72 Score=27.61 Aligned_cols=173 Identities=11% Similarity=-0.049 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044815 470 PDIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 470 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 549 (675)
++...-...+..+.+.+..+ +...+.++... ++...-...+.++.+.+.. ++...+.++.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 35555555555555555532 33333333332 4566656666666666653 34444444443 46777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHH
Q 044815 550 SGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAA 629 (675)
Q Consensus 550 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 629 (675)
.++.+.|+.+ +...+..+++ .++.......+.++.+.|.. ++...+..+...++...-...+.++.+.+. .++.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~ 176 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVR 176 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHH
Confidence 7888877743 4455555553 35666666677777777764 355555555566666665666777777665 5566
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCc
Q 044815 630 LFFHKLLGKDQNVDRVSLAALKNACYESNK 659 (675)
Q Consensus 630 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 659 (675)
..+.++++. ++...-.....++...+.
T Consensus 177 ~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 177 AAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 666666653 355555555555555443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.39 E-value=62 Score=28.07 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 523 ISSAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP 575 (675)
Q Consensus 523 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 575 (675)
..++..+|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5567777777766655443 4556666666777777777777777777766666
No 275
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=62.06 E-value=23 Score=29.55 Aligned_cols=56 Identities=7% Similarity=-0.049 Sum_probs=35.6
Q ss_pred HHccCCHHHHHHHHHHHhcCCCCC--CHHHHHHHHH------HHHhcCchhHHHHHHHHHHhcc
Q 044815 619 LCSEKRVGMAALFFHKLLGKDQNV--DRVSLAALKN------ACYESNKYALFSDLSQRIAEGI 674 (675)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 674 (675)
+...|++=+|-++++.+-...+.+ +...|..|++ ...+.|++..|..++.++++.+
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334477777777777776666555 4445555555 2345677777877777776654
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.96 E-value=51 Score=24.71 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=22.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 481 AFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
.+.+.|++++|..+.+... .||...|.+|-. .+.|-.+++...+.++..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3445555555555443322 344444444322 2445555555544444443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.96 E-value=53 Score=24.69 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044815 481 AFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQI 536 (675)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (675)
.+.+.|++++|..+.+... .||...|.+|-. .+.|-.+++...+.++..+
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3445556665555544332 355555544432 2445555555555454443
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.44 E-value=95 Score=26.54 Aligned_cols=122 Identities=13% Similarity=-0.034 Sum_probs=58.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044815 505 PTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLA 584 (675)
Q Consensus 505 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 584 (675)
++...-...+.++.+.|..+ +...+.++.. .++...-...+.++.+.++.+ +...+..++. .++...-...+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444555555555432 3333333332 355555555666666666543 3333333432 24444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 044815 585 YEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMAALFFHKLL 636 (675)
Q Consensus 585 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (675)
.++.+.|+. ++...+..+...++...-...+.++.+.|. .++...+.+++
T Consensus 129 ~aL~~~~~~-~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 129 FALGEIGDE-RAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHTCG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 666665553 344444444444444444455555555554 34555555554
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.33 E-value=55 Score=30.77 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 405 YNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888888888888888763
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.11 E-value=1.7e+02 Score=28.56 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=102.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHH---
Q 044815 407 AIIDGLCKKGRVQEAYELLKKAFQRELQAD-----KITYTILLSEHLKQAETKQALGLFCRMVKA--GLNPDIHAYT--- 476 (675)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~--- 476 (675)
.++..|...|++.+|.+++.++.+.--..| ...|..-++.|...++..++...+...... .+.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456666666666666666666554211111 123444555666677777777666655432 1223332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC------HhHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 044815 477 -TLIAAFC-RQKKMKESEKFFQEAITAGLFPT------KETYTSMICGYLRDGNISSAVKYFQ-RMNQIGCAPDNITYGA 547 (675)
Q Consensus 477 -~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ 547 (675)
.-+..+. ..+++..|...|-+..+.--... ...|..| .+. -.++..+...++. +....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aL-l~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKI-MLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHH-HTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHH-HcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 1122344 56777777777766543200111 1122222 111 2233223322222 1111112355555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHH
Q 044815 548 LISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGM 627 (675)
Q Consensus 548 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 627 (675)
++.++ ..+++.+...+++.... .+..|......+-..+. .--...+.++.++....+...+...+.- ..++
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~-----~Ir~~~L~~i~~pYsrIsl~~iA~~l~l--s~~e 332 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYD-----TMLEQNLCRIIEPYSRVQVAHVAESIQL--PMPQ 332 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHH-----HHHHHHHHHHHTTCSEEEHHHHHHHHTC--CHHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHH-----HHHHHHHHHHhHhhceeeHHHHHHHHCc--CHHH
Confidence 66654 45677766666655432 24444432211110000 0001122223334444556666665543 6788
Q ss_pred HHHHHHHHhcCC
Q 044815 628 AALFFHKLLGKD 639 (675)
Q Consensus 628 A~~~~~~~~~~~ 639 (675)
+...+-+|+..|
T Consensus 333 vE~~L~~lI~dg 344 (394)
T 3txn_A 333 VEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888888887654
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.38 E-value=2.1e+02 Score=27.92 Aligned_cols=241 Identities=10% Similarity=-0.021 Sum_probs=127.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHH---
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKLVRSDNYKP---NVHTYTAMISGYCKE-EKMNRAEMLLERMKEQGLLPNTNTY--- 370 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~--- 370 (675)
....|...|.+.|+.++..+++.....--+..+ .......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445677888888888888877765422111111 223455666666653 3344444444444432110 11222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHH
Q 044815 371 ---TSLIYGHCKVGNFERAYDLMDLMGKE--GCTPN---IYAYNAIIDGLCKKGRVQEAYELLKKAFQR--ELQADKITY 440 (675)
Q Consensus 371 ---~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 440 (675)
.-++..|...|++.+|.+++..+.+. ..... ...|-.-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 35788888999999998888877653 11111 344566677888889999998888776532 122333322
Q ss_pred HH----HHHHHH-hcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHh
Q 044815 441 TI----LLSEHL-KQAETKQALGLFCRMVKAGLNPD------IHAYTTLIAAFCRQKKMKESEKFFQ-EAITAGLFPTKE 508 (675)
Q Consensus 441 ~~----li~~~~-~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~ 508 (675)
.. -...+. ..+++..|...|-+..+.--... ...|..|... . .++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHHHHhccccccccCCccHH
Confidence 21 223455 78889988887766543210111 1123222222 2 233333333222 211111235555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044815 509 TYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNI 543 (675)
Q Consensus 509 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 543 (675)
.+..++.+| ..+++.+...+++.... .+..|..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 566666654 55677777777666543 2444554
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.80 E-value=87 Score=28.06 Aligned_cols=89 Identities=17% Similarity=0.016 Sum_probs=49.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044815 513 MICGYLRDGNISSAVKYFQRMNQI--GCAP----DNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYE 586 (675)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 586 (675)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 477888888999999988876542 2222 1111122222222222223333444444 32 3344555666677
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 044815 587 YCKQGDSATAMIILESLD 604 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~ 604 (675)
+.+.|+-++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 888888888888776553
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.46 E-value=55 Score=27.33 Aligned_cols=51 Identities=10% Similarity=0.170 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044815 526 AVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISPC 576 (675)
Q Consensus 526 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 576 (675)
+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5566666666655443 45566666667777777777777777777666663
No 284
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=44.24 E-value=3.6e+02 Score=29.93 Aligned_cols=22 Identities=5% Similarity=-0.157 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 044815 372 SLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m 393 (675)
.++.+++...+.+...++++..
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~ 784 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYT 784 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.98 E-value=1.4e+02 Score=24.88 Aligned_cols=50 Identities=10% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 386 AYDLMDLMGKEGCTPN-IYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQA 435 (675)
Q Consensus 386 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 435 (675)
+.++|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4556666665554333 4445555566666666666666666666655444
No 286
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=43.86 E-value=81 Score=31.41 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=48.3
Q ss_pred HHhCCChhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 044815 143 LISNGNFERAHEVMQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACELGLVEYAEEVFDEMCARGVCAD 222 (675)
Q Consensus 143 l~~~~~~~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 222 (675)
+...+++..|.++|..-...+...|++++|..+.-...+ |+--+..|.+.+-..=..-|+..--+..|..+.+.| ..+
T Consensus 351 lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln 428 (494)
T 1bpo_A 351 MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLN 428 (494)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCC
T ss_pred HHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccc
Confidence 334455555666666666666777777777666554432 233344444443333233344444555555555544 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q 044815 223 ASSYKLMVVAYCRMGRVTEAD 243 (675)
Q Consensus 223 ~~~~~~li~~~~~~g~~~~A~ 243 (675)
..----+++....+|+.+-..
T Consensus 429 ~~ESlEl~r~vL~q~r~~lle 449 (494)
T 1bpo_A 429 KYESLELCRPVLQQGRKQLLE 449 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHhhHHhHHHHhccHHHHHH
Confidence 322223344444445444333
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.36 E-value=1.4e+02 Score=24.47 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhHCCCCCC
Q 044815 205 EYAEEVFDEMCARGVCAD-ASSYKLMVVAYCRMGRVTEADRWLSAMLDRGAILD 257 (675)
Q Consensus 205 ~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 257 (675)
+++..+|..|...|+... +.-|......+...|++.+|.++|+.-++.+..|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 446777777777665543 34455566667777777777777777777766653
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.05 E-value=2.4e+02 Score=27.06 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044815 150 ERAHEVMQCMVSSFAEIGRLKEGFSMVIEMT 180 (675)
Q Consensus 150 ~~a~~~~~~li~~~~~~g~~~~A~~~~~~~~ 180 (675)
++..+....+|.-|...|+.++|...++++.
T Consensus 51 ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 51 TAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4455666788999999999999999999864
No 289
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=41.97 E-value=95 Score=26.03 Aligned_cols=52 Identities=15% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHccCCHHHHHHHHHHHhcCCCCCC-----------------HHHHHHHHHHHHhcCchhHHHHHHHH
Q 044815 618 KLCSEKRVGMAALFFHKLLGKDQNVD-----------------RVSLAALKNACYESNKYALFSDLSQR 669 (675)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 669 (675)
+|.+..++..|+..++.+++-+++-| ..-+..++..|.+.|+.+||.+.+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.81 E-value=1.6e+02 Score=24.97 Aligned_cols=125 Identities=13% Similarity=-0.027 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044815 471 DIHAYTTLIAAFCRQKKMKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALIS 550 (675)
Q Consensus 471 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 550 (675)
+...-...+.++.+.+..+. ...+.++.. .++..+-...+.++.+.++.+ +...+.++.. .++...-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 34444444444444444322 222223332 245555555555566555532 3333333332 345555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 044815 551 GLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLW 608 (675)
Q Consensus 551 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 608 (675)
++.+.+.. ++...+..+++ .++...-...+.++.+.|. .++...+..+...++
T Consensus 130 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d~~ 182 (201)
T 3ltj_A 130 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAETGT 182 (201)
T ss_dssp HHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHCC
T ss_pred HHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhCCC
Confidence 66666553 34444444443 2344455555556665554 334444444444333
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=38.01 E-value=75 Score=28.85 Aligned_cols=48 Identities=10% Similarity=-0.031 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 044815 554 KQSKLDEACQFYESMIGKGISPCEVT--RVTLAYEYCKQGDSATAMIILE 601 (675)
Q Consensus 554 ~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~ 601 (675)
..+......++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 44554445566666777665554311 1122333445566665555554
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.77 E-value=2.2e+02 Score=25.41 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 400 PNIYAYNAIIDGLCKKGRVQEAYELLKKAF 429 (675)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 429 (675)
.+.......+..+.+.|+.++|.++|=+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 445555666677777777777777775543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.71 E-value=1.6e+02 Score=24.09 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 544 TYGALISGLCKQSKLDEACQFYESMI 569 (675)
Q Consensus 544 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (675)
....++.-|...|+.++|.+.++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34556666777777777777777763
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.38 E-value=84 Score=28.51 Aligned_cols=8 Identities=13% Similarity=0.194 Sum_probs=3.5
Q ss_pred HhcCCHHH
Q 044815 483 CRQKKMKE 490 (675)
Q Consensus 483 ~~~g~~~~ 490 (675)
++.|+.+-
T Consensus 227 ~~~~~~~~ 234 (285)
T 1wdy_A 227 VEKKHLGL 234 (285)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 34444443
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.12 E-value=1.7e+02 Score=23.18 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044815 545 YGALISGLCKQSKLDEACQFYESMI 569 (675)
Q Consensus 545 ~~~l~~~~~~~g~~~~A~~~~~~~~ 569 (675)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4455666666677777777766663
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.63 E-value=74 Score=32.36 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCh------hhH-HHHHHHHHccCCHHHHHHHHHHHhcC
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDKKLWI------RTV-NTLIRKLCSEKRVGMAALFFHKLLGK 638 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (675)
.++.++..|...+.++.|.++..+..-+... ..| ..+++.+.-.+++.+|.+.+..+...
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455666677777777777777766443210 112 23455555666676676666665443
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.55 E-value=1.3e+02 Score=24.29 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=38.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.+.-+..+...|-+
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3556677666542 234445555566667888888887766556667777767777766643
No 298
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.33 E-value=2.6e+02 Score=25.23 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHHH
Q 044815 399 TPNIYAYNAIIDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLKQAE----TKQALGLFCRMVKAGLNPDIHA 474 (675)
Q Consensus 399 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~~~~p~~~~ 474 (675)
.++..+-...+.++.+.| .+++...+..+.+ .++...-...+.++...+. ....+.++..+... .++..+
T Consensus 34 ~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~v 107 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACV 107 (280)
T ss_dssp CSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHH
T ss_pred cCCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHH
Q ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044815 475 YTTLIAAFCRQKK-----MKESEKFFQEAITAGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALI 549 (675)
Q Consensus 475 ~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 549 (675)
-...+.++.+.+. ...+...+..+... ++..+-...+.++...|+ .++...+.++.. .++...-...+
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d---~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~ 180 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFD---KSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC---SCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhhC---CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHHHH
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCChhhHHHHHHHHHccCCHHHH
Q 044815 550 SGLCKQS-KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDSATAMIILESLDKKLWIRTVNTLIRKLCSEKRVGMA 628 (675)
Q Consensus 550 ~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 628 (675)
.++...| ....+...+..+++ .++..+-...+.++.+.|+.+..-.+.+.+..+. .-...+.++.+.|. .++
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~-~~~ 253 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT---VYDDIIEAAGELGD-KTL 253 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC-GGG
T ss_pred HHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc-hhh
Q ss_pred HHHHHHHhcCCCCCCHH
Q 044815 629 ALFFHKLLGKDQNVDRV 645 (675)
Q Consensus 629 ~~~~~~~~~~~~~p~~~ 645 (675)
...+.++++....++..
T Consensus 254 ~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 254 LPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHHHHHHTTSSCCHHH
T ss_pred hHHHHHHHhcCCCcHHH
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.91 E-value=76 Score=28.01 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044815 525 SAVKYFQRMNQIGCAPD-NITYGALISGLCKQSKLDEACQFYESMIGKGISP 575 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 575 (675)
++..+|..|...|+--. ...|......+...|++++|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555444332 3445555555555555555555555555554444
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.08 E-value=1.8e+02 Score=25.43 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=9.0
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 044815 587 YCKQGDSATAMIILESLD 604 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~~ 604 (675)
|.+.|.+++|.+++++.-
T Consensus 124 Ciek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 124 CIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHTTCHHHHHHHHHHHS
T ss_pred HHHhcchHHHHHHHHHHh
Confidence 444555555555555543
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.58 E-value=4.7e+02 Score=27.62 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 299 HTVLIDGLCKKGWTEKAFRLFLKL 322 (675)
Q Consensus 299 ~~~l~~~~~~~g~~~~A~~~~~~~ 322 (675)
.-.+|-.+.++|.+++|.++..+.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345677778888888888877554
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.22 E-value=49 Score=29.18 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=8.0
Q ss_pred HHHHHhcCChhHHHHHH
Q 044815 195 VGIACELGLVEYAEEVF 211 (675)
Q Consensus 195 ~~~~~~~g~~~~A~~~~ 211 (675)
+...+..|+.+-+..++
T Consensus 46 L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33444556554444433
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.21 E-value=2.1e+02 Score=23.43 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 044815 372 SLIYGHCKVGNFERAYDLMDLM 393 (675)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m 393 (675)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.98 E-value=2.1e+02 Score=31.97 Aligned_cols=29 Identities=21% Similarity=-0.064 Sum_probs=23.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhcCC
Q 044815 611 TVNTLIRKLCSEKRVGMAALFFHKLLGKD 639 (675)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (675)
-|..++..+-+.+-++.++++.+.+++.-
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 45777888888899999999888888653
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.41 E-value=1.3e+02 Score=23.91 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=39.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 533 MNQIGCAPDNITYGALISGLCKQS-KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 533 m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.+.-+..+...|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 556677766542 33455555555 5677888888888876666777777777777766644
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.86 E-value=4.2e+02 Score=26.48 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 044815 501 AGLFPTKETYTSMICGYLRDGNISSAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTR 580 (675)
Q Consensus 501 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 580 (675)
.|++--...|..-.+.+...|++++|.++--.... |+--+..|.+.+-..=...|...--+.+|..+++.|- .+..--
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~-Ln~~ES 432 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYES 432 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc-cchHHh
Confidence 34433334455555566666777777666555433 3333455555444433344555566666776666553 334444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 044815 581 VTLAYEYCKQGDSATAMIILES 602 (675)
Q Consensus 581 ~~l~~~~~~~g~~~~A~~~~~~ 602 (675)
..++..-...|+.+-..+++.+
T Consensus 433 lEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHhHHHHhccHHHHHHHHHhc
Confidence 4455555566666555555443
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.59 E-value=1.3e+02 Score=24.46 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=38.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.+..+..+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 355567665443 2345555556666777888888887766666677777777777777644
No 308
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.43 E-value=54 Score=24.36 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=9.5
Q ss_pred HHHcCCHHHHHHHHHHH
Q 044815 587 YCKQGDSATAMIILESL 603 (675)
Q Consensus 587 ~~~~g~~~~A~~~~~~~ 603 (675)
+...|++=+|-++++.+
T Consensus 11 lfn~g~~~eaHEvlE~~ 27 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPY 27 (94)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHH
Confidence 33446666666666654
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.29 E-value=1.1e+02 Score=24.75 Aligned_cols=60 Identities=7% Similarity=-0.117 Sum_probs=38.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.+.-+..+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4455677766542 23344444445 567888888888777666777777777777776643
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.93 E-value=2.9e+02 Score=24.35 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHCCCCCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCC
Q 044815 241 EADRWLSAMLDRGAILDNA-TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKP 294 (675)
Q Consensus 241 ~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (675)
++.++|..|...|+-.... .|......+... |++.+|..+|..-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~---g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESR---GLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcc
Confidence 4445555555554433322 223333333332 45555555555554444444
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.28 E-value=3.6e+02 Score=25.21 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 044815 261 LTLLITAFCDKGFRGSIKQAFELLEEM 287 (675)
Q Consensus 261 ~~~ll~~~~~~~~~~~~~~a~~~~~~~ 287 (675)
...++.-|... |+.++|...++++
T Consensus 6 ~~~ii~EYf~~---~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEH---GDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 34556666665 5777777776665
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.77 E-value=1.1e+02 Score=25.33 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 044815 314 KAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKMNRAEMLLERMKEQ--GLLPNTNTYTSLIYGHCKVG 381 (675)
Q Consensus 314 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g 381 (675)
.+++-+.+.++..|.+.+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444445444332 233344444444555555666655554 44444444444444444444
No 313
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.43 E-value=5.5e+02 Score=27.10 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=14.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC
Q 044815 483 CRQKKMKESEKFFQEAITAGLFPT 506 (675)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~~~ 506 (675)
...|+++.|.+.++++ ++.|.
T Consensus 549 ~~~g~~~~AL~~i~~L---~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL---DLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHT---SCSCC
T ss_pred HHcCCHHHHHHHHHhC---CCCCC
Confidence 6788888888776653 35564
No 314
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.89 E-value=1.4e+02 Score=24.31 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=39.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPDNITYGALISGLCKQS-KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.+.-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3556677666542 23444444444 5667888888888776666677777777777777654
No 315
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.46 E-value=2.7e+02 Score=26.77 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 044815 298 THTVLIDGLCKKGWTEKAFRLFLKL 322 (675)
Q Consensus 298 ~~~~l~~~~~~~g~~~~A~~~~~~~ 322 (675)
....++.-|...|+.++|.+.++++
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3456777788888888888888776
No 316
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.22 E-value=2.3e+02 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 044815 408 IIDGLCKKGRVQEAYELLKKA 428 (675)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~~ 428 (675)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444444444444443
No 317
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.10 E-value=1.2e+02 Score=26.68 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=12.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC
Q 044815 340 SGYCKEEKMNRAEMLLERMKEQGLL 364 (675)
Q Consensus 340 ~~~~~~~~~~~A~~~~~~m~~~g~~ 364 (675)
...+..|+.+.+..+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3344555555555555554444433
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.69 E-value=1.7e+02 Score=20.58 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 044815 532 RMNQIGCAPDNITYGALISGLCKQS-KLDEACQFYESMIGKGISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 532 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|.+..+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3455666666543 33444554443 4456777777777665555566766666666666543
No 319
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.77 E-value=5e+02 Score=25.41 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044815 331 NVHTYTAMISGYCKEEKMNRAEMLLERMKEQ 361 (675)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 361 (675)
+..--..++.+++...+.+...++++.....
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~ 296 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFKG 296 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhCC
Confidence 3334445555555556666555665555543
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.73 E-value=1.9e+02 Score=29.35 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH--HHH-HHHHHHHHHcCCHHHHHHHHHHHhhC-C-ChhhHHHH
Q 044815 542 NITYGALISGLCKQSKLDEACQFYESMIGK-GISPCE--VTR-VTLAYEYCKQGDSATAMIILESLDKK-L-WIRTVNTL 615 (675)
Q Consensus 542 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l 615 (675)
...+|.+++.|...+.++.|..+..+..-- ...++. ..| +.++..+.-.+++.+|.+.+.....+ | +....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~--- 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL--- 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS---
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh---
Confidence 457899999999999999999999988520 001121 233 45678888999999999988887653 3 32221
Q ss_pred HHHHHccCCHHHHHHH--HHHHhcCCCCCCHHH------------HHHHHHHHHhcCchhHHHHHHHHH
Q 044815 616 IRKLCSEKRVGMAALF--FHKLLGKDQNVDRVS------------LAALKNACYESNKYALFSDLSQRI 670 (675)
Q Consensus 616 ~~~~~~~g~~~~A~~~--~~~~~~~~~~p~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~ 670 (675)
|....+.++ .-+++ .|.-|+... |..|+.+ .+.|+.++....+++-
T Consensus 308 -------gfr~~a~K~lI~V~LL-lG~iP~r~lf~q~~l~~~L~pY~~Lv~A-vr~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 308 -------GFLQQSNKLHCCIQLL-MGDIPELSFFHQSNMQKSLLPYYHLTKA-VKLGDLKKFTSTITKY 367 (523)
T ss_dssp -------HHHHHHHHHHHHHHHH-HTCCCCHHHHTTTSCHHHHHHHHHHHHH-HHHTCHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHhHHhh-cCCCCChHHhhchhHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHh
Confidence 112222221 22222 244444333 5556655 5889988887777653
No 321
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.37 E-value=3.4e+02 Score=23.38 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=30.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcCCC
Q 044815 344 KEEKMNRAEMLLERMKEQGLLPNTNTYTSLIYGHCKVGN-----FERAYDLMDLMGKEGCT 399 (675)
Q Consensus 344 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~ 399 (675)
+-.+.+.|+-.+-+|++.| .|....-..++.+....|. ...|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3467777777777888777 5444444444444444442 23444445555555543
No 322
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.48 E-value=2.3e+02 Score=21.08 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHH
Q 044815 525 SAVKYFQRMNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMI-----GKGISPCEVTRVT 582 (675)
Q Consensus 525 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~~~ 582 (675)
.|..+.+++...|+.|+..+...++..|...+- + +.++.++.. ..|..|+..+...
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 366777777778888888888888887766553 2 444444333 3467777665544
No 323
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.21 E-value=1e+02 Score=22.61 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=16.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 044815 612 VNTLIRKLCSEKRVGMAALFFHKL 635 (675)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~ 635 (675)
+.-....+.+.|++|+|++..+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 455667777788888887777653
No 324
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.21 E-value=3.6e+02 Score=23.19 Aligned_cols=96 Identities=18% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHhHCCCCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 044815 229 MVVAY---CRMGRVTEADRWLSAMLDRGAILDNATLTLLITAFCDKGF--RGSIKQAFELLEEMVRKGWKPNVYTHTVLI 303 (675)
Q Consensus 229 li~~~---~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (675)
+|+++ .+-.+.+.|+-++-+|++.|..|....-..++.+.-..|. ..-+..|...++.....|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 044815 304 DGLCKKGWTEKAFRLFLKLVR 324 (675)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~~~~ 324 (675)
..++.+-+...+...+...++
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 325
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.70 E-value=1.1e+02 Score=20.75 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 156 MQCMVSSFAEIGRLKEGFSMVIEMTNNGLPLITSTLNRVVGIACE 200 (675)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 200 (675)
+++++..+++..-.++++..+.++.+.| ..+..+|..-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3445555555555666666666666666 4555555555555443
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.34 E-value=1.7e+02 Score=24.76 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=30.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhHCCCCCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCh
Q 044815 230 VVAYCRMGRVTEADRWLSAMLDRGAILDNA---TLTLLITAFCDKGFRGSIKQAFELLEEMVRKGWKPNV 296 (675)
Q Consensus 230 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (675)
+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++.. + ..+.....++.+.+.+.|..++.
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~-~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-G-GNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-C-TTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-C-CcchhhHHHHHHHHHHCCCCCCc
Confidence 344445555555555666666666554432 12222222222 1 13444445555666666655443
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.33 E-value=2.1e+02 Score=23.63 Aligned_cols=69 Identities=10% Similarity=0.019 Sum_probs=43.3
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH
Q 044815 524 SSAVKYFQR-MNQIGCAPDNITYGALISGLCKQSKLDEACQFYESMIGK--GISPCEVTRVTLAYEYCKQGDS 593 (675)
Q Consensus 524 ~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~ 593 (675)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.+.-+..+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 334443333 34567776543 344556666666777788888888776 5555667777777777777754
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.26 E-value=1.4e+02 Score=33.43 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=24.1
Q ss_pred HHHHHhhhcChhHHHHHHHHhhhCCCCcchhhhHHHHHHHHHhCCChhHHHHHHH
Q 044815 103 VVASLANEAGSMVALSFFYWAIGFAKFRHFMRLYIVCATSLISNGNFERAHEVMQ 157 (675)
Q Consensus 103 v~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~a~~~~~ 157 (675)
++..+...+.+..+.+|..|....+ . ..| ..++++...|.+++|...|.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~----~-~~y-v~gr~~L~~ge~~~A~~~F~ 864 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDP----I-AVY-LKALIYLKSKEAVKAVRCFK 864 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSH----H-HHH-HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCCh----H-HHH-HHHHHHHHcCCHHHHHHHHH
Confidence 4444444455556666665554322 1 123 44555555555555555444
No 329
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.90 E-value=1.7e+02 Score=25.59 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=6.5
Q ss_pred hcCCHHHHHHHHHHHh
Q 044815 379 KVGNFERAYDLMDLMG 394 (675)
Q Consensus 379 ~~g~~~~A~~~~~~m~ 394 (675)
..|+.+.+..+++.+.
T Consensus 18 ~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3344444444444333
No 330
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.75 E-value=2.2e+02 Score=23.95 Aligned_cols=65 Identities=6% Similarity=-0.001 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCC
Q 044815 337 AMISGYCKEEKMNRAEMLLERMKEQGLLPNTN---TYTSLIYGHCK-VGNFERAYDLMDLMGKEGCTPN 401 (675)
Q Consensus 337 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~ 401 (675)
+.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++.. ..+.....++.+.+.+.|..++
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34444555565555556666666666655432 12222222211 2233444555555666665544
No 331
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.14 E-value=4.1e+02 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 044815 549 ISGLCKQSKLDEACQFYESMIGK 571 (675)
Q Consensus 549 ~~~~~~~g~~~~A~~~~~~~~~~ 571 (675)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34577888888888888888763
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.89 E-value=3.3e+02 Score=21.86 Aligned_cols=41 Identities=12% Similarity=-0.072 Sum_probs=18.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044815 409 IDGLCKKGRVQEAYELLKKAFQRELQADKITYTILLSEHLK 449 (675)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 449 (675)
+..+...+..-.|.++++.+.+.++..+..|...-++.+.+
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 33333344444455555555544444444444333333333
No 333
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.55 E-value=1.9e+02 Score=29.33 Aligned_cols=77 Identities=10% Similarity=-0.034 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--CCChhhHHHHHHHHHccCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 044815 579 TRVTLAYEYCKQGDSATAMIILESLDK--KLWIRTVNTLIRKLCSEKRVGMAALFFHKLLGKDQNVDRVSLAALKNACYE 656 (675)
Q Consensus 579 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 656 (675)
....|++...-...++.|..+|.++.. +..-..||.|+-.....|+.-+|.-+|-+.+... .|-..+..+|...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 445566666667788899999998765 4456688999888888999999999988888764 4578888888777654
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.15 E-value=5.5e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=10.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 044815 229 MVVAYCRMGRVTEADRWLSAM 249 (675)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~m 249 (675)
++.-|...|+.++|...++++
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHc
Confidence 444444455555555555444
Done!