BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044821
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4J5I|A Chain A, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
 pdb|4J5I|B Chain B, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
 pdb|4J5I|C Chain C, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
 pdb|4J5I|D Chain D, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
 pdb|4J5I|E Chain E, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
 pdb|4J5I|F Chain F, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
 pdb|4J5I|G Chain G, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
 pdb|4J5I|H Chain H, Crystal Structure Of An Alpha-ketoglutarate-dependent
          Taurine Dioxygenase From Mycobacterium Smegmatis
          Length = 304

 Score = 27.3 bits (59), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 1  VLELGILVHSVIIGISLGASESPKTIKPLVAALTFHQ--FFEGM 42
          V +LG  + + I G+ +G   SP T+  + AAL  H+  FF G 
Sbjct: 10 VTKLGAHIGARIDGVRVGGDLSPATVSAINAALLEHKVIFFSGQ 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,498,113
Number of Sequences: 62578
Number of extensions: 110855
Number of successful extensions: 217
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 1
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)