Query 044821
Match_columns 145
No_of_seqs 126 out of 1090
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9u_A Receptor tyrosine-prote 12.8 1.8E+02 0.006 15.4 2.4 13 96-108 18-30 (40)
2 2ls4_A High affinity copper up 10.0 93 0.0032 15.2 0.0 15 67-81 7-21 (26)
3 2zt9_E Cytochrome B6-F complex 7.1 3.1E+02 0.011 13.9 2.6 14 93-106 10-23 (31)
4 3h3g_B Parathyroid hormone-rel 5.8 3.3E+02 0.011 13.0 1.6 9 7-15 12-20 (24)
5 1vf5_E Protein PET L; photosyn 5.4 4.1E+02 0.014 13.5 2.1 14 93-106 11-24 (32)
6 1vf5_F Protein PET M; photosyn 4.4 5.2E+02 0.018 13.4 4.0 24 59-82 6-29 (35)
7 3b4r_A Putative zinc metallopr 4.2 6.2E+02 0.021 18.3 3.0 21 26-46 44-64 (224)
8 2gfp_A EMRD, multidrug resista 4.0 1.1E+03 0.037 17.0 4.3 21 59-79 127-147 (375)
9 1q90_M Cytochrome B6F complex 3.9 6.1E+02 0.021 13.5 3.7 24 58-81 6-29 (39)
10 2ih3_C Voltage-gated potassium 3.8 7.5E+02 0.026 15.7 2.9 80 55-145 25-104 (122)
No 1
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=12.79 E-value=1.8e+02 Score=15.35 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 044821 96 IFNAAAAGILIYM 108 (145)
Q Consensus 96 ~l~a~aaG~flyv 108 (145)
+..-+-.|+|+|-
T Consensus 18 vif~~lg~tflyw 30 (40)
T 2l9u_A 18 VIFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhCceeEEE
Confidence 3444567888884
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=9.99 E-value=93 Score=15.21 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhh
Q 044821 67 LTTPVGIAIGIGISS 81 (145)
Q Consensus 67 ~~~PlG~~iG~~i~~ 81 (145)
++.-+|+.+|+++..
T Consensus 7 iavvlGa~~Gyf~F~ 21 (26)
T 2ls4_A 7 IAVAAGAGTGYFLFS 21 (26)
Confidence 556678888888754
No 3
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=7.11 E-value=3.1e+02 Score=13.91 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 044821 93 VEGIFNAAAAGILI 106 (145)
Q Consensus 93 ~~~~l~a~aaG~fl 106 (145)
..+...+++.|.++
T Consensus 10 ~l~~~~~iA~GL~f 23 (31)
T 2zt9_E 10 FLALFTGIAAGLLF 23 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667778887664
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=5.84 E-value=3.3e+02 Score=12.96 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 044821 7 LVHSVIIGI 15 (145)
Q Consensus 7 ~~Hs~~eGl 15 (145)
-+|++.||+
T Consensus 12 wL~~ll~~v 20 (24)
T 3h3g_B 12 FLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 356666654
No 5
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=5.39 E-value=4.1e+02 Score=13.54 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 044821 93 VEGIFNAAAAGILI 106 (145)
Q Consensus 93 ~~~~l~a~aaG~fl 106 (145)
..+...++++|.++
T Consensus 11 ~l~~~f~iA~GL~f 24 (32)
T 1vf5_E 11 FIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 44566777777653
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=4.36 E-value=5.2e+02 Score=13.40 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 044821 59 AILALFFSLTTPVGIAIGIGISSV 82 (145)
Q Consensus 59 ~~~~~~~s~~~PlG~~iG~~i~~~ 82 (145)
+....+....+++|..+|+.+...
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 344556667788888888887764
No 7
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=4.23 E-value=6.2e+02 Score=18.27 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 044821 26 IKPLVAALTFHQFFEGMGLGG 46 (145)
Q Consensus 26 ~~~~~~aI~lHk~~e~~~l~~ 46 (145)
...+++++.+||.-++++--.
T Consensus 44 ~l~l~~~v~~HElgH~~~A~~ 64 (224)
T 3b4r_A 44 FILLFVSVVLHELGHSYVAKK 64 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999887544
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=3.96 E-value=1.1e+03 Score=16.96 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044821 59 AILALFFSLTTPVGIAIGIGI 79 (145)
Q Consensus 59 ~~~~~~~s~~~PlG~~iG~~i 79 (145)
-......++...+|..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 334445555555555555444
No 9
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=3.87 E-value=6.1e+02 Score=13.46 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 044821 58 VAILALFFSLTTPVGIAIGIGISS 81 (145)
Q Consensus 58 ~~~~~~~~s~~~PlG~~iG~~i~~ 81 (145)
.+....+....+++|..+|+.+..
T Consensus 6 If~~A~i~~~L~LvGla~Gf~LLk 29 (39)
T 1q90_M 6 IAGTALTMVGMTLVGLAIGFVLLR 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=3.85 E-value=7.5e+02 Score=15.67 Aligned_cols=80 Identities=10% Similarity=-0.006 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchHHHHHHH
Q 044821 55 SRGVAILALFFSLTTPVGIAIGIGISSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGAN 134 (145)
Q Consensus 55 ~~~~~~~~~~~s~~~PlG~~iG~~i~~~~~~~~~~~~~~~~~l~a~aaG~flyv~~~eilp~~~~~~~~~~~~~~~~~~~ 134 (145)
+.+...+....-+..-+-...+++..+..+++++..+...++-.++.. +.-++.-|+-|.... .|....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T--~tTvGyGDi~P~t~~---------gr~~~~ 93 (122)
T 2ih3_C 25 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACET--ATTVAYGDLYPVTLW---------GRLVAV 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHH--HTTCCCSSSCCCSHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeee--eeeeecCCCCCCCcc---------HHHHHH
Q ss_pred HHHHHhhhhcC
Q 044821 135 VSLLLGAGCMS 145 (145)
Q Consensus 135 ~~~~~G~~~M~ 145 (145)
...+.|..+++
T Consensus 94 ~~~~~Gi~~~~ 104 (122)
T 2ih3_C 94 VVMVAGITSFG 104 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Done!