Query 044821
Match_columns 145
No_of_seqs 126 out of 1090
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 12:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044821.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044821hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3d31c1 f.58.1.1 (C:13-260) Su 10.0 2.3E+02 0.016 18.4 8.3 38 39-77 65-102 (248)
2 d1h2sa_ f.13.1.1 (A:) Sensory 3.7 5.6E+02 0.041 16.6 8.1 15 96-110 125-139 (225)
3 d1unld_ a.74.1.1 (D:) CDK5 act 3.6 4.8E+02 0.035 16.3 3.4 16 104-119 58-73 (150)
4 d2r6gf2 f.58.1.1 (F:261-504) M 3.4 5.7E+02 0.042 16.2 8.5 34 37-70 35-68 (244)
5 d2np5a2 a.121.1.1 (A:78-195) T 3.4 2.9E+02 0.021 15.8 2.1 16 5-20 73-88 (118)
6 d1kqfb2 f.23.22.1 (B:246-290) 3.0 3.9E+02 0.028 13.3 3.1 18 93-110 17-34 (45)
7 d1i76a_ d.92.1.11 (A:) Neutrop 2.9 2.2E+02 0.016 17.1 1.2 15 30-44 112-126 (163)
8 d1vyia_ d.293.1.1 (A:) Phospho 2.6 1.6E+02 0.012 17.6 0.1 11 33-43 15-25 (111)
9 d1xuca1 d.92.1.11 (A:104-272) 2.5 2.7E+02 0.02 16.7 1.2 15 30-44 113-127 (169)
10 d1mmqa_ d.92.1.11 (A:) Matrily 2.5 2.7E+02 0.02 16.7 1.2 15 30-44 114-128 (166)
No 1
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=10.01 E-value=2.3e+02 Score=18.37 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 044821 39 FEGMGLGGCITQAKFKSRGVAILALFFSLTTPVGIAIGI 77 (145)
Q Consensus 39 ~e~~~l~~~l~~~~~~~~~~~~~~~~~s~~~PlG~~iG~ 77 (145)
+-|..++..+.+.+.+.++.+..........| +...+.
T Consensus 65 ~lg~~~a~~~~~~~~~~~~~~~~l~~~p~~ip-~vv~~~ 102 (248)
T d3d31c1 65 LLGAPTGYILARFDFPGKRLVESIIDVPVVVP-HTVAGI 102 (248)
T ss_dssp HHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSC-HHHHHH
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHHH-Hhcchh
Confidence 34444444454555554554544444444444 344443
No 2
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=3.67 E-value=5.6e+02 Score=16.56 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 044821 96 IFNAAAAGILIYMSL 110 (145)
Q Consensus 96 ~l~a~aaG~flyv~~ 110 (145)
....+++..|+|+..
T Consensus 125 ~~f~~s~~~~~~i~y 139 (225)
T d1h2sa_ 125 ALFGMGAVAFLGLVY 139 (225)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345567777777765
No 3
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.61 E-value=4.8e+02 Score=16.28 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhhhc
Q 044821 104 ILIYMSLVDLLAADFM 119 (145)
Q Consensus 104 ~flyv~~~eilp~~~~ 119 (145)
.|+|+-+-|++|++..
T Consensus 58 VFvYmL~Re~v~~~~~ 73 (150)
T d1unld_ 58 VFLYMLCRDVISSEVG 73 (150)
T ss_dssp HHHHHHHHHHSCTTCC
T ss_pred eehHHHHHHhcCcccc
Confidence 4777777777776643
No 4
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.43 E-value=5.7e+02 Score=16.23 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 044821 37 QFFEGMGLGGCITQAKFKSRGVAILALFFSLTTP 70 (145)
Q Consensus 37 k~~e~~~l~~~l~~~~~~~~~~~~~~~~~s~~~P 70 (145)
..+-|+.++..+.+.+.+.++.+......-.+.|
T Consensus 35 ~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip 68 (244)
T d2r6gf2 35 TVAVGMVLACLVQWEALRGKAVYRVLLILPYAVP 68 (244)
T ss_dssp HHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSC
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhh
Confidence 3444454555455556666666666666665555
No 5
>d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=3.39 E-value=2.9e+02 Score=15.82 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 044821 5 GILVHSVIIGISLGAS 20 (145)
Q Consensus 5 ~l~~Hs~~eGlalG~~ 20 (145)
+-.+|++.||+++-.-
T Consensus 73 A~~L~aliDGL~~~~l 88 (118)
T d2np5a2 73 AALLLATVDGLALDAI 88 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHh
Confidence 4568888999888764
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.96 E-value=3.9e+02 Score=13.34 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044821 93 VEGIFNAAAAGILIYMSL 110 (145)
Q Consensus 93 ~~~~l~a~aaG~flyv~~ 110 (145)
..++.-.+++|.|=|+..
T Consensus 17 ~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 17 AAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhee
Confidence 445666778888888874
No 7
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.93 E-value=2.2e+02 Score=17.08 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHH
Q 044821 30 VAALTFHQFFEGMGL 44 (145)
Q Consensus 30 ~~aI~lHk~~e~~~l 44 (145)
+..+++||+=+++.|
T Consensus 112 ~~~v~~HEiGHaLGL 126 (163)
T d1i76a_ 112 LFLVAAHEFGHSLGL 126 (163)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred heeehhhhhhhhhcc
Confidence 468999999999886
No 8
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=2.61 E-value=1.6e+02 Score=17.57 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q 044821 33 LTFHQFFEGMG 43 (145)
Q Consensus 33 I~lHk~~e~~~ 43 (145)
=+.|++.|+|+
T Consensus 15 EiaHQiAESfS 25 (111)
T d1vyia_ 15 EIAHQIAESFS 25 (111)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHhh
Confidence 35677777654
No 9
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.52 E-value=2.7e+02 Score=16.66 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 044821 30 VAALTFHQFFEGMGL 44 (145)
Q Consensus 30 ~~aI~lHk~~e~~~l 44 (145)
+..+++||+=+++.|
T Consensus 113 ~~~v~~HEiGHaLGL 127 (169)
T d1xuca1 113 LFLVAAHEFGHSLGL 127 (169)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred eeeehhhhhccccCC
Confidence 468899999888876
No 10
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.48 E-value=2.7e+02 Score=16.72 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 044821 30 VAALTFHQFFEGMGL 44 (145)
Q Consensus 30 ~~aI~lHk~~e~~~l 44 (145)
...+++||+=+++.|
T Consensus 114 ~~~v~~HEiGHaLGL 128 (166)
T d1mmqa_ 114 FLYAATHELGHSLGM 128 (166)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred hhhhhhhhhccccCC
Done!