BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044823
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 141/498 (28%), Positives = 218/498 (43%), Gaps = 67/498 (13%)
Query: 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIE 68
H +++P+ QGH+ P+F +A+LL G T V T N R L ++ + +
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKR----LLKSRGPKAFDGFTD 65
Query: 69 IQFPWQEAGLPEGCENFDMLPSIDLAYNFLTSLQKLQLPFENLFRE---------QTPQP 119
F +P+G M D++ + T Q ++ F + E P
Sbjct: 66 FNF----ESIPDGLT--PMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPV 119
Query: 120 CCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHENV--SSDSEYFK- 176
C++SD C+ +T+ A +F +P +++ S LL + R S V + D Y
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFR-SFVERGIIPFKDESYLTN 178
Query: 177 ---------VPGFPHH-----IEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTF 222
+PG + ++F + + P D + EF ++ K +++NTF
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVDFIRT----TNPNDIMLEFFIEVADRVNKDTTILLNTF 234
Query: 223 EELESASVKEYKNAKQGKVWCIGPVSLCNKES-----LDKVERGNKAAIDIPECLTWLDS 277
ELES + + ++ IGP+ K++ LD ++ N D ECL WL+S
Sbjct: 235 NELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLD-SNLWKEDT-ECLDWLES 291
Query: 278 QQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKXXXXXXXXXXXXXXX 337
++P SVVYV GS +T QL+E GL KK F+W+ R
Sbjct: 292 KEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRP--DLVIGGSVIFSSEFTN 349
Query: 338 RIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEK 397
I RGL I W PQ +L+HP++GGFLTHCGWNS+ E I AGV ML WP F DQ + +
Sbjct: 350 EIADRGL-IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCR 408
Query: 398 LIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMXXXXXXXXXXXXAKEFG 457
I IG+ + VK+E++ IN ++ A E
Sbjct: 409 FICNEWEIGMEIDTN--------------VKREELAKLINEVI-AGDKGKKMKQKAMELK 453
Query: 458 ELAKRALEEGGSSYNNIK 475
+ A+ GG SY N+
Sbjct: 454 KKAEENTRPGGCSYMNLN 471
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 150/523 (28%), Positives = 226/523 (43%), Gaps = 99/523 (18%)
Query: 4 ETSNFHFILLPFLAQGHLIPMFDIA-RLLAQHGATATIVTT----PVNAARFKTVLARAL 58
E+ H ++P GHLIP+ + A RL+ HG T T V P A R TVL
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQR--TVLD--- 57
Query: 59 QCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDL-------------AYNFLTSLQKLQ 105
LP + LP +DL + S +L+
Sbjct: 58 ------------------SLPSSISSV-FLPPVDLTDLSSSTRIESRISLTVTRSNPELR 98
Query: 106 LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVH 165
F++ F E P ++ D+ D A +F+VP IF+ + L L + K+
Sbjct: 99 KVFDS-FVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFF--LHLPKLD 155
Query: 166 ENVSSD----SEYFKVPGFPHHIEFTKVQLPIS-----PPTDELKEFNEKILAADKKTY- 215
E VS + +E +PG +P++ P + K+ K L + K Y
Sbjct: 156 ETVSCEFRELTEPLMLPGC----------VPVAGKDFLDPAQDRKDDAYKWLLHNTKRYK 205
Query: 216 ---GVIINTFEELESASVKEYKNAKQGK--VWCIGPVSLCNKESLDKVERGNKAAIDIPE 270
G+++NTF ELE ++K + K V+ +GP+ K+ + E E
Sbjct: 206 EAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEES--------E 257
Query: 271 CLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSR----VGNKXXXX 326
CL WLD+Q SV+YV GS LT QL EL LGL S++ F+WV R + N
Sbjct: 258 CLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFD 317
Query: 327 XXXXXXXXX------XXRIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAG 380
R K RG +I WAPQ +L+HP+ GGFLTHCGWNS+LE + +G
Sbjct: 318 SHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSG 377
Query: 381 VQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILM 440
+ ++ WPL+ +Q N L+ E +R + + G++ LV++E+V + LM
Sbjct: 378 IPLIAWPLYAEQKMNAVLLSEDIRAALRP------RAGDDG----LVRREEVARVVKGLM 427
Query: 441 XXXXXXXXXXXXAKEFGELAKRALEEGGSSYNNIKFFHPRYHA 483
KE E A R L++ G+S + ++ A
Sbjct: 428 EGEEGKGVRNKM-KELKEAACRVLKDDGTSTKALSLVALKWKA 469
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/496 (26%), Positives = 224/496 (45%), Gaps = 74/496 (14%)
Query: 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT-------TPVNAARFKTV 53
M+ N I +P GHL + A+LL H I P + K+V
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 54 LARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLA-YNFLTSL-QKLQLPFENL 111
LA Q +L I L E++ P QE +L S + FL SL ++ + +
Sbjct: 63 LASQPQIQL-IDLPEVEPPPQE-----------LLKSPEFYILTFLESLIPHVKATIKTI 110
Query: 112 FREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFH----GFSCFCLLCLDILRVSKVHEN 167
+ ++ D +D +F +P +F GF +L L ++ +V ++
Sbjct: 111 LSNKV---VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSL-MLSLKNRQIEEVFDD 166
Query: 168 VSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKE--FNE--------KILAADKKTYGV 217
D + +PG + + P++ L + FN+ K+ + T G+
Sbjct: 167 SDRDHQLLNIPGISNQV-----------PSNVLPDACFNKDGGYIAYYKLAERFRDTKGI 215
Query: 218 IINTFEELESASVKEY--KNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWL 275
I+NTF +LE +S+ + K ++ +GP+ + K+++ I L WL
Sbjct: 216 IVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWL 270
Query: 276 DSQQPSSVVYVCLGSI-CNLTSSQLIELGLGLEASKKPFIWVSRVGNKXXXXXXXXXXXX 334
D Q SVV++C GS+ + SQ+ E+ LGL+ S F+W + K
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM-- 328
Query: 335 XXXRIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFC 394
++G+G+ I GWAPQV +L+H A+GGF++HCGWNS LE + GV +LTWP++ +Q
Sbjct: 329 ---ELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQL 384
Query: 395 NEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMXXXXXXXXXXXXAK 454
N +V+ GV +G+ V + G + +V E++E + LM +
Sbjct: 385 NAFRLVK--EWGVGLGLRVDYRKGSD-----VVAAEEIEKGLKDLM---DKDSIVHKKVQ 434
Query: 455 EFGELAKRALEEGGSS 470
E E+++ A+ +GGSS
Sbjct: 435 EMKEMSRNAVVDGGSS 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/496 (26%), Positives = 224/496 (45%), Gaps = 74/496 (14%)
Query: 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT-------TPVNAARFKTV 53
M+ N I +P GHL + A+LL H I P + K+V
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 54 LARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLA-YNFLTSL-QKLQLPFENL 111
LA Q +L I L E++ P QE +L S + FL SL ++ + +
Sbjct: 63 LASQPQIQL-IDLPEVEPPPQE-----------LLKSPEFYILTFLESLIPHVKATIKTI 110
Query: 112 FREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFH----GFSCFCLLCLDILRVSKVHEN 167
+ ++ D +D +F +P +F GF +L L ++ +V ++
Sbjct: 111 LSNKV---VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSL-MLSLKNRQIEEVFDD 166
Query: 168 VSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKE--FNE--------KILAADKKTYGV 217
D + +PG + + P++ L + FN+ K+ + T G+
Sbjct: 167 SDRDHQLLNIPGISNQV-----------PSNVLPDACFNKDGGYIAYYKLAERFRDTKGI 215
Query: 218 IINTFEELESASVKEY--KNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWL 275
I+NTF +LE +S+ + K ++ +GP+ + K+++ I L WL
Sbjct: 216 IVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWL 270
Query: 276 DSQQPSSVVYVCLGSI-CNLTSSQLIELGLGLEASKKPFIWVSRVGNKXXXXXXXXXXXX 334
D Q SVV++C GS+ + SQ+ E+ LGL+ S F+W + K
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM-- 328
Query: 335 XXXRIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFC 394
++G+G+ I GWAPQV +L+H A+GGF++HCGWNS LE + GV +LTWP++ +Q
Sbjct: 329 ---ELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQL 384
Query: 395 NEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMXXXXXXXXXXXXAK 454
N +V+ GV +G+ V + G + +V E++E + LM +
Sbjct: 385 NAFRLVK--EWGVGLGLRVDYRKGSD-----VVAAEEIEKGLKDLM---DKDSIVHKKVQ 434
Query: 455 EFGELAKRALEEGGSS 470
E E+++ A+ +GGSS
Sbjct: 435 EMKEMSRNAVVDGGSS 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/432 (27%), Positives = 185/432 (42%), Gaps = 45/432 (10%)
Query: 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQ---HGATATIVTTPVNAARFKTVLARA 57
M+ T+N H +L F H P+ + R LA H + T+ NA+ F +
Sbjct: 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSM-HT 59
Query: 58 LQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTP 117
+QC ++ I G+PEG F P D+ + + + E
Sbjct: 60 MQCNIKSYDIS-------DGVPEGYV-FAGRPQEDIELFTRAAPESFRQGMVMAVAETGR 111
Query: 118 QPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCL---LCLDILR----VSKVHENVSS 170
C+++D I + D AA+ V + F L + +D +R VS +
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGR--E 169
Query: 171 DSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKIL----AADKKTYGVIINTFEELE 226
D +PG + F +Q I L ++L K V IN+FEEL+
Sbjct: 170 DELLNFIPGM-SKVRFRDLQEGIV--FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELD 226
Query: 227 SASVKEYKNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYV 286
+ + K +K IGP +L + G CL WL ++P+SVVY+
Sbjct: 227 DSLTNDLK-SKLKTYLNIGPFNLITPPPVVPNTTG---------CLQWLKERKPTSVVYI 276
Query: 287 CLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKXXXXXXXXXXXXXXXRIKGRGLLI 346
G++ ++++ L LEAS+ PFIW R + +G G+++
Sbjct: 277 SFGTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMVV 330
Query: 347 RGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIG 406
WAPQ +L+H AVG F+THCGWNS E ++ GV ++ P F DQ N +++ +VL IG
Sbjct: 331 P-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Query: 407 VSVGVEVPMKFG 418
V + V K G
Sbjct: 390 VRIEGGVFTKSG 401
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 125/473 (26%), Positives = 185/473 (39%), Gaps = 55/473 (11%)
Query: 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLI 67
H +L F H P+ + + +A A + T+ +R+ + I+
Sbjct: 14 LHVAVLAFPFGTHAAPLLSLVKKIATE-APKVTFSFFCTTTTNDTLFSRSNEFLPNIKYY 72
Query: 68 EIQFPWQEAGLPEGCENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQP----CCII 123
+ GLP+G + S + ++ +Q F+++ E + C++
Sbjct: 73 NVH-----DGLPKG-----YVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLV 122
Query: 124 SDMCIPWTVDTAAKFN---VPRIIFHGFSCFCLLCLDILRVSKVHENVSSDSEYFKVPGF 180
+D + D A + + VP S + D++R + V +PGF
Sbjct: 123 TDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGF 182
Query: 181 PHHIEFTKVQLPISPPTDELKEFN---EKILAADKKTYGVIINTFEELESASVKEYKNAK 237
P E LP D F K+ + V IN+F + E N+K
Sbjct: 183 P---ELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENEL-NSK 238
Query: 238 QGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSS 297
+ +GP +L + E G CL WLD + SSVVY+ GS+
Sbjct: 239 FKLLLNVGPFNLTTPQRKVSDEHG---------CLEWLDQHENSSVVYISFGSVVTPPPH 289
Query: 298 QLIELGLGLEASKKPFIWVSRVGNKXXXXXXXXXXXXXXXRIKGRGLLIRGWAPQVMILS 357
+L L LE PFIW R K R K +G ++ WAPQV IL
Sbjct: 290 ELTALAESLEECGFPFIWSFRGDPKEKLPKGFLE------RTKTKGKIV-AWAPQVEILK 342
Query: 358 HPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKF 417
H +VG FLTH GWNS LE I GV M++ P F DQ N L VL IGV V
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV-------- 394
Query: 418 GEEEKIGVLVKKEDVETAINILMXXXXXXXXXXXXAKEFGELAKRALEEGGSS 470
GVL KE ++ A+ + M K E A +A+E+ G+S
Sbjct: 395 ----DNGVLT-KESIKKALELTMSSEKGGIMRQKIVK-LKESAFKAVEQNGTS 441
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 349 WAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCN 395
W PQ +L HP F+TH G N E I G+ + PLF DQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 346 IRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRI 405
+ W PQ+ IL + F+TH G S EG++ M+ P DQF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML------ 338
Query: 406 GVSVGVEVPMKFGEEEKIGVLVKKEDVETAINIL 439
G+ V K EE L++ ETA+ ++
Sbjct: 339 ---QGLGVARKLATEEATADLLR----ETALALV 365
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 346 IRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEV 402
+ W PQ+ IL+ F+TH G S++E +S V M+ P +Q N + IVE+
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
Query: 267 DIPECLTWLDSQQPSSVVYVCLGSICNLTSSQL---IELGLGLEA----SKKPFIWVSRV 319
D+P L+ D+ +P +VY+ LG+ T L I+ GL+A + P + VS +
Sbjct: 230 DLPAWLSSRDTARP--LVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGL 287
Query: 320 GNKXXXXXXXXXXXXXXXRIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISA 379
G + + W PQ +L H V + H G ++L + A
Sbjct: 288 GEVPAN------------------VRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGA 327
Query: 380 GVQMLTWPLFTDQF 393
GV L++P D F
Sbjct: 328 GVPQLSFPWAGDSF 341
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 58 LQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSI 91
LQCR RL+ + FP + G E C+N ++L S+
Sbjct: 73 LQCRFPRRLVVLGFPCNQFGHQENCQNEEILNSL 106
>pdb|1OOW|A Chain A, The Crystal Structure Of The Spinach Plastocyanin Double
Mutant G8dL12E GIVES INSIGHT INTO ITS LOW REACTIVITY
Towards Photosystem 1 And Cytochrome F
Length = 99
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 179 GFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQ 238
GFPH++ F + ++P ++ E +L A +TY V + E + K Y + Q
Sbjct: 34 GFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLT-----EKGTYKFYCSPHQ 88
Query: 239 G 239
G
Sbjct: 89 G 89
>pdb|2PCF|A Chain A, The Complex Of Cytochrome F And Plastocyanin Determined
With Paramagnetic Nmr. Based On The Structures Of
Cytochrome F And Plastocyanin, 10 Structures
pdb|1YLB|B Chain B, Nmr Solution Structure Of The Reduced Spinach Plastocyanin
Length = 99
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 179 GFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQ 238
GFPH++ F + ++P ++ E +L A +TY V + E + K Y + Q
Sbjct: 34 GFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLT-----EKGTYKFYCSPHQ 88
Query: 239 G 239
G
Sbjct: 89 G 89
>pdb|1AG6|A Chain A, Plastocyanin From Spinach
Length = 99
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 179 GFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQ 238
GFPH++ F + ++P ++ E +L A +TY V + E + K Y + Q
Sbjct: 34 GFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLT-----EKGTYKFYCSPHQ 88
Query: 239 G 239
G
Sbjct: 89 G 89
>pdb|9PCY|A Chain A, High-Resolution Solution Structure Of Reduced French Bean
Plastocyanin And Comparison With The Crystal Structure
Of Poplar Plastocyanin
Length = 99
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 179 GFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINT 221
GFPH++ F + ++P ++ E++L A +TY V ++T
Sbjct: 34 GFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDT 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,742,391
Number of Sequences: 62578
Number of extensions: 540367
Number of successful extensions: 1260
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 22
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)