Query 044823
Match_columns 497
No_of_seqs 146 out of 1383
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 1.1E-71 2.4E-76 560.1 49.5 484 5-488 6-491 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.2E-68 9E-73 535.6 47.0 455 5-483 7-471 (477)
3 PLN03007 UDP-glucosyltransfera 100.0 9.5E-68 2.1E-72 537.8 49.4 469 6-483 4-480 (482)
4 PLN02208 glycosyltransferase f 100.0 2E-66 4.4E-71 518.5 45.6 434 6-483 3-439 (442)
5 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.8E-66 8.3E-71 517.7 46.6 438 1-483 1-450 (451)
6 PLN02992 coniferyl-alcohol glu 100.0 3.3E-66 7.2E-71 518.4 45.2 438 6-483 4-469 (481)
7 PLN02555 limonoid glucosyltran 100.0 1E-65 2.2E-70 516.3 46.1 455 1-484 1-470 (480)
8 PLN03015 UDP-glucosyl transfer 100.0 1.2E-65 2.6E-70 511.3 45.1 440 6-481 2-466 (470)
9 PLN02764 glycosyltransferase f 100.0 1.4E-65 3.1E-70 509.3 45.4 438 5-486 3-448 (453)
10 PLN00164 glucosyltransferase; 100.0 2.3E-65 5E-70 517.5 46.9 449 5-485 1-475 (480)
11 PLN02173 UDP-glucosyl transfer 100.0 2.3E-65 5E-70 509.6 44.4 431 5-482 3-447 (449)
12 PLN02670 transferase, transfer 100.0 3.3E-65 7.1E-70 510.8 44.4 454 5-485 4-467 (472)
13 PLN02207 UDP-glycosyltransfera 100.0 5.4E-65 1.2E-69 508.8 45.3 450 5-484 1-466 (468)
14 PLN02210 UDP-glucosyl transfer 100.0 6.9E-65 1.5E-69 510.8 45.8 441 4-483 5-455 (456)
15 PLN00414 glycosyltransferase f 100.0 7.8E-65 1.7E-69 507.6 45.0 435 6-484 3-441 (446)
16 PLN02562 UDP-glycosyltransfera 100.0 5E-64 1.1E-68 504.1 45.3 429 1-481 1-447 (448)
17 PLN03004 UDP-glycosyltransfera 100.0 3.1E-64 6.6E-69 501.8 41.5 434 6-472 2-450 (451)
18 PLN02448 UDP-glycosyltransfera 100.0 2.3E-63 4.9E-68 503.3 46.4 441 3-483 6-457 (459)
19 PLN02152 indole-3-acetate beta 100.0 3.3E-63 7.1E-68 495.0 44.3 437 6-481 2-454 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 3.5E-63 7.6E-68 503.6 45.1 451 7-483 2-478 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 4.3E-62 9.3E-67 494.9 45.7 456 6-484 2-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.8E-50 1.3E-54 407.9 28.5 425 7-497 20-484 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-51 2.4E-56 428.1 5.5 417 9-497 2-460 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.4E-43 3E-48 356.1 30.0 377 13-481 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3.7E-43 8E-48 354.6 21.2 386 8-480 1-400 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 5.9E-42 1.3E-46 355.4 18.3 424 7-490 5-465 (496)
27 COG1819 Glycosyl transferases, 100.0 3.6E-40 7.7E-45 327.4 21.9 392 7-486 1-403 (406)
28 PRK12446 undecaprenyldiphospho 99.9 1.8E-24 3.9E-29 212.4 27.7 323 8-455 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.3E-23 2.7E-28 205.5 24.4 306 8-439 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.4E-21 3.1E-26 189.5 27.8 326 8-457 1-339 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 8.3E-21 1.8E-25 185.2 24.1 122 282-443 189-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4E-18 8.6E-23 169.4 27.9 329 7-456 1-338 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.1E-16 2.3E-21 158.7 27.9 330 9-456 1-338 (350)
34 TIGR01133 murG undecaprenyldip 99.7 8.8E-15 1.9E-19 144.9 27.5 322 8-454 1-333 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 1.6E-14 3.5E-19 144.0 23.3 351 8-478 6-383 (385)
36 TIGR03590 PseG pseudaminic aci 99.6 2.5E-14 5.5E-19 136.1 20.3 104 282-398 171-278 (279)
37 PRK13609 diacylglycerol glucos 99.6 2.3E-13 4.9E-18 136.5 27.5 146 280-455 201-351 (380)
38 PRK13608 diacylglycerol glucos 99.6 1.3E-13 2.8E-18 138.3 23.5 179 280-496 201-384 (391)
39 PRK00025 lpxB lipid-A-disaccha 99.6 2.1E-13 4.6E-18 136.7 23.9 351 7-483 1-376 (380)
40 COG4671 Predicted glycosyl tra 99.6 2.2E-13 4.7E-18 126.2 18.2 336 5-441 7-364 (400)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1.5E-15 3.2E-20 133.7 -2.5 137 283-443 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.5 1.7E-11 3.7E-16 122.8 23.9 144 279-453 204-359 (382)
43 TIGR03492 conserved hypothetic 99.4 6.5E-10 1.4E-14 111.1 27.3 142 281-443 205-365 (396)
44 PLN02871 UDP-sulfoquinovose:DA 99.3 3.4E-09 7.3E-14 109.1 31.0 141 283-457 264-415 (465)
45 PF03033 Glyco_transf_28: Glyc 99.3 1E-12 2.2E-17 111.7 3.7 127 10-151 1-133 (139)
46 cd03814 GT1_like_2 This family 99.3 7.3E-09 1.6E-13 102.6 30.2 141 283-457 198-347 (364)
47 cd03794 GT1_wbuB_like This fam 99.2 1.2E-08 2.7E-13 101.6 28.3 148 282-458 220-381 (394)
48 cd03818 GT1_ExpC_like This fam 99.2 4.1E-08 8.9E-13 99.0 31.3 99 341-459 280-383 (396)
49 cd04962 GT1_like_5 This family 99.2 3.9E-08 8.4E-13 98.1 30.0 333 8-456 1-350 (371)
50 cd03823 GT1_ExpE7_like This fa 99.2 3.5E-08 7.5E-13 97.4 29.0 93 341-455 242-342 (359)
51 cd03800 GT1_Sucrose_synthase T 99.2 4.5E-08 9.8E-13 98.6 30.2 346 18-457 21-383 (398)
52 cd03817 GT1_UGDG_like This fam 99.2 7E-08 1.5E-12 95.7 30.0 97 341-460 258-361 (374)
53 cd03816 GT1_ALG1_like This fam 99.2 1.2E-07 2.7E-12 96.0 31.6 352 6-458 2-400 (415)
54 PRK10307 putative glycosyl tra 99.1 3.9E-07 8.4E-12 92.5 35.0 148 283-459 230-390 (412)
55 cd03808 GT1_cap1E_like This fa 99.1 6E-08 1.3E-12 95.4 27.7 331 9-456 1-343 (359)
56 COG3980 spsG Spore coat polysa 99.1 1.6E-08 3.5E-13 91.5 19.2 133 283-443 160-294 (318)
57 PRK05749 3-deoxy-D-manno-octul 99.1 3.7E-07 8E-12 93.0 31.8 113 343-482 303-421 (425)
58 cd03820 GT1_amsD_like This fam 99.1 1E-07 2.2E-12 93.3 26.6 97 341-459 234-336 (348)
59 cd03801 GT1_YqgM_like This fam 99.1 9.5E-07 2.1E-11 87.0 33.7 93 340-454 254-353 (374)
60 cd03795 GT1_like_4 This family 99.0 3.4E-07 7.4E-12 90.6 29.3 149 283-459 192-349 (357)
61 TIGR03449 mycothiol_MshA UDP-N 99.0 1.7E-06 3.6E-11 87.6 32.0 95 341-457 282-383 (405)
62 cd03825 GT1_wcfI_like This fam 99.0 8.6E-07 1.9E-11 88.0 28.9 111 341-480 243-361 (365)
63 cd03799 GT1_amsK_like This is 99.0 7.1E-07 1.5E-11 88.2 27.6 95 341-457 235-342 (355)
64 cd03798 GT1_wlbH_like This fam 98.9 5E-06 1.1E-10 82.1 32.8 82 341-444 258-346 (377)
65 cd03819 GT1_WavL_like This fam 98.9 2.2E-06 4.8E-11 84.8 29.3 154 283-459 186-348 (355)
66 TIGR02468 sucrsPsyn_pln sucros 98.9 7.4E-06 1.6E-10 89.1 33.2 98 341-458 547-653 (1050)
67 cd03805 GT1_ALG2_like This fam 98.9 5.3E-06 1.2E-10 83.4 30.2 94 341-457 279-379 (392)
68 cd03821 GT1_Bme6_like This fam 98.9 7.6E-06 1.6E-10 81.0 30.9 94 341-456 261-359 (375)
69 TIGR00236 wecB UDP-N-acetylglu 98.8 9.5E-07 2.1E-11 88.0 23.2 320 8-443 1-335 (365)
70 TIGR02472 sucr_P_syn_N sucrose 98.8 5.8E-06 1.2E-10 84.5 28.6 93 341-455 316-419 (439)
71 cd03811 GT1_WabH_like This fam 98.8 1.5E-06 3.3E-11 85.0 23.7 89 341-451 245-341 (353)
72 cd05844 GT1_like_7 Glycosyltra 98.8 5.2E-06 1.1E-10 82.6 27.6 95 341-457 244-351 (367)
73 cd03822 GT1_ecORF704_like This 98.8 3.6E-06 7.8E-11 83.4 26.4 96 341-459 246-351 (366)
74 cd03807 GT1_WbnK_like This fam 98.8 3.4E-05 7.4E-10 75.9 33.1 92 341-456 250-346 (365)
75 TIGR03087 stp1 sugar transfera 98.8 2.4E-06 5.2E-11 86.2 24.9 93 341-457 279-377 (397)
76 PRK09922 UDP-D-galactose:(gluc 98.8 4.4E-06 9.6E-11 83.0 25.8 149 283-459 181-343 (359)
77 cd03796 GT1_PIG-A_like This fa 98.8 3.5E-05 7.6E-10 77.8 32.6 131 282-443 193-334 (398)
78 PF04007 DUF354: Protein of un 98.7 3.2E-05 6.9E-10 74.8 28.6 292 19-440 11-308 (335)
79 COG1519 KdtA 3-deoxy-D-manno-o 98.7 9.1E-05 2E-09 72.0 30.4 327 10-463 51-407 (419)
80 TIGR03088 stp2 sugar transfera 98.6 8.8E-05 1.9E-09 74.1 30.4 94 341-456 254-352 (374)
81 cd03812 GT1_CapH_like This fam 98.6 3.2E-05 6.9E-10 76.6 27.0 86 341-449 248-338 (358)
82 TIGR02149 glgA_Coryne glycogen 98.6 0.00014 3.1E-09 72.9 31.8 150 283-456 202-366 (388)
83 cd04955 GT1_like_6 This family 98.6 0.00011 2.4E-09 72.8 30.0 138 285-456 196-344 (363)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 98.6 7.5E-06 1.6E-10 81.5 21.0 133 281-443 198-338 (363)
85 PRK15427 colanic acid biosynth 98.6 9.4E-05 2E-09 74.7 29.0 112 341-481 278-403 (406)
86 cd03802 GT1_AviGT4_like This f 98.5 8.2E-05 1.8E-09 72.9 27.0 129 284-442 173-308 (335)
87 cd04951 GT1_WbdM_like This fam 98.5 5.4E-05 1.2E-09 74.9 25.9 79 341-443 244-327 (360)
88 PRK14089 ipid-A-disaccharide s 98.5 8.6E-06 1.9E-10 79.4 18.6 155 282-460 168-332 (347)
89 PRK15179 Vi polysaccharide bio 98.5 0.0008 1.7E-08 71.8 34.1 96 341-456 573-673 (694)
90 PRK01021 lpxB lipid-A-disaccha 98.5 9.9E-05 2.1E-09 75.8 25.5 192 237-460 379-589 (608)
91 cd03809 GT1_mtfB_like This fam 98.5 4.4E-05 9.5E-10 75.5 22.5 94 340-457 251-351 (365)
92 TIGR02470 sucr_synth sucrose s 98.4 0.00081 1.8E-08 71.9 32.2 93 341-455 618-726 (784)
93 PLN02275 transferase, transfer 98.4 0.0015 3.3E-08 65.2 32.9 122 7-145 4-132 (371)
94 PLN02949 transferase, transfer 98.4 0.0014 3.1E-08 67.0 31.6 97 341-459 334-440 (463)
95 PF02350 Epimerase_2: UDP-N-ac 98.3 8.5E-06 1.8E-10 80.0 13.6 252 99-442 50-318 (346)
96 KOG3349 Predicted glycosyltran 98.3 2.1E-06 4.6E-11 70.2 7.2 115 283-407 5-130 (170)
97 cd03792 GT1_Trehalose_phosphor 98.3 0.0027 5.9E-08 63.4 31.3 93 341-457 251-352 (372)
98 PF02684 LpxB: Lipid-A-disacch 98.3 0.00046 9.9E-09 67.8 24.4 206 237-471 151-365 (373)
99 PLN00142 sucrose synthase 98.2 0.0013 2.8E-08 70.5 28.1 72 364-455 670-749 (815)
100 cd03804 GT1_wbaZ_like This fam 98.2 0.00012 2.7E-09 72.4 19.2 139 284-455 197-340 (351)
101 cd03806 GT1_ALG11_like This fa 98.2 0.0032 7E-08 63.9 29.3 81 341-444 304-394 (419)
102 TIGR03568 NeuC_NnaA UDP-N-acet 98.1 0.00096 2.1E-08 66.3 23.1 131 281-441 201-338 (365)
103 PRK00654 glgA glycogen synthas 98.1 0.0062 1.3E-07 62.8 28.9 132 283-441 283-427 (466)
104 PLN02846 digalactosyldiacylgly 98.1 0.0091 2E-07 60.6 28.9 74 345-443 287-364 (462)
105 cd04949 GT1_gtfA_like This fam 98.0 0.0007 1.5E-08 67.5 20.9 102 341-461 260-364 (372)
106 cd04946 GT1_AmsK_like This fam 98.0 0.0002 4.2E-09 72.5 15.5 164 283-478 231-406 (407)
107 PF00534 Glycos_transf_1: Glyc 98.0 8.4E-05 1.8E-09 65.3 11.1 93 341-455 72-171 (172)
108 cd03791 GT1_Glycogen_synthase_ 98.0 0.015 3.3E-07 60.1 29.6 133 283-441 297-441 (476)
109 TIGR02095 glgA glycogen/starch 97.9 0.036 7.7E-07 57.3 30.8 131 283-441 292-436 (473)
110 PLN02316 synthase/transferase 97.9 0.058 1.3E-06 59.8 32.6 119 341-482 899-1032(1036)
111 PF13844 Glyco_transf_41: Glyc 97.8 0.00048 1E-08 69.1 14.7 151 280-453 283-441 (468)
112 cd03813 GT1_like_3 This family 97.8 0.0096 2.1E-07 61.6 24.4 95 341-457 353-457 (475)
113 TIGR02918 accessory Sec system 97.8 0.013 2.9E-07 60.6 25.0 106 341-461 375-485 (500)
114 COG5017 Uncharacterized conser 97.7 0.00025 5.4E-09 57.2 8.7 109 284-411 2-123 (161)
115 COG0763 LpxB Lipid A disacchar 97.7 0.014 3E-07 56.5 21.4 213 238-479 155-377 (381)
116 COG0381 WecB UDP-N-acetylgluco 97.6 0.026 5.7E-07 54.8 22.8 322 6-443 2-342 (383)
117 PRK15484 lipopolysaccharide 1, 97.2 0.013 2.9E-07 58.6 16.4 82 341-443 256-345 (380)
118 cd01635 Glycosyltransferase_GT 97.2 0.033 7.2E-07 50.6 17.8 49 341-391 160-216 (229)
119 PF13692 Glyco_trans_1_4: Glyc 97.2 0.00093 2E-08 55.9 6.1 80 341-442 52-135 (135)
120 cd04950 GT1_like_1 Glycosyltra 97.1 0.34 7.4E-06 48.3 29.8 79 341-443 253-341 (373)
121 PLN02501 digalactosyldiacylgly 96.9 0.26 5.6E-06 52.1 22.3 76 343-443 602-682 (794)
122 TIGR02193 heptsyl_trn_I lipopo 96.7 0.24 5.2E-06 48.2 19.4 135 281-440 179-319 (319)
123 PRK15490 Vi polysaccharide bio 96.7 0.72 1.6E-05 47.8 23.0 65 341-412 454-523 (578)
124 COG3914 Spy Predicted O-linked 96.6 0.051 1.1E-06 55.1 13.6 108 279-393 427-542 (620)
125 PF13477 Glyco_trans_4_2: Glyc 96.4 0.031 6.8E-07 46.8 10.1 101 9-145 1-105 (139)
126 PRK09814 beta-1,6-galactofuran 96.4 0.018 4E-07 56.5 9.4 96 341-461 206-317 (333)
127 KOG4626 O-linked N-acetylgluco 96.3 0.043 9.3E-07 55.9 11.3 123 281-409 758-887 (966)
128 PF06722 DUF1205: Protein of u 96.0 0.0079 1.7E-07 46.8 3.7 56 267-322 26-86 (97)
129 COG1817 Uncharacterized protei 95.5 2.4 5.2E-05 40.1 20.5 106 16-148 8-113 (346)
130 PRK14098 glycogen synthase; Pr 95.3 0.38 8.3E-06 49.8 14.0 80 341-440 361-449 (489)
131 PRK10017 colanic acid biosynth 95.1 0.89 1.9E-05 46.0 15.7 165 272-459 225-410 (426)
132 TIGR02201 heptsyl_trn_III lipo 95.1 2.4 5.3E-05 41.7 18.6 98 281-386 181-285 (344)
133 PRK10422 lipopolysaccharide co 94.9 1.9 4.1E-05 42.6 17.2 98 281-386 183-287 (352)
134 PHA01633 putative glycosyl tra 94.5 1.1 2.4E-05 43.7 14.1 85 341-442 200-307 (335)
135 PRK10916 ADP-heptose:LPS hepto 94.4 5.7 0.00012 39.1 19.4 104 8-144 1-106 (348)
136 PF13524 Glyco_trans_1_2: Glyc 94.2 0.42 9.1E-06 36.7 8.6 83 367-478 9-91 (92)
137 PF12000 Glyco_trans_4_3: Gkyc 94.2 0.77 1.7E-05 39.9 10.9 93 33-145 1-94 (171)
138 PF13579 Glyco_trans_4_4: Glyc 94.2 0.083 1.8E-06 44.9 5.0 93 23-145 6-102 (160)
139 cd03789 GT1_LPS_heptosyltransf 93.4 7.1 0.00015 37.0 17.2 42 9-50 1-44 (279)
140 PRK10964 ADP-heptose:LPS hepto 93.0 8.7 0.00019 37.3 17.6 39 8-46 1-41 (322)
141 PHA01630 putative group 1 glyc 92.0 1.3 2.9E-05 43.2 10.3 39 349-389 197-242 (331)
142 TIGR03713 acc_sec_asp1 accesso 91.9 2 4.3E-05 44.8 12.0 93 342-461 409-507 (519)
143 PRK02261 methylaspartate mutas 91.7 0.8 1.7E-05 38.3 7.2 60 5-69 1-60 (137)
144 PF08660 Alg14: Oligosaccharid 91.7 2 4.3E-05 37.5 9.9 113 13-145 3-127 (170)
145 PLN02939 transferase, transfer 90.5 6.1 0.00013 43.7 14.2 84 341-441 836-930 (977)
146 PRK14099 glycogen synthase; Pr 89.3 8.3 0.00018 40.0 13.7 39 5-45 1-47 (485)
147 TIGR02195 heptsyl_trn_II lipop 88.6 25 0.00054 34.3 20.4 95 281-386 174-276 (334)
148 PRK13932 stationary phase surv 88.2 7.3 0.00016 36.3 11.1 43 4-48 2-44 (257)
149 PRK10125 putative glycosyl tra 88.2 9.6 0.00021 38.5 13.1 100 298-436 257-365 (405)
150 cd02067 B12-binding B12 bindin 87.5 1.5 3.2E-05 35.6 5.6 47 9-55 1-47 (119)
151 PF13439 Glyco_transf_4: Glyco 87.5 0.96 2.1E-05 38.9 4.8 28 17-44 11-38 (177)
152 KOG2941 Beta-1,4-mannosyltrans 87.2 30 0.00065 33.5 25.1 127 5-151 10-141 (444)
153 TIGR02400 trehalose_OtsA alpha 86.5 4 8.7E-05 41.8 9.3 104 347-482 341-455 (456)
154 cd03788 GT1_TPS Trehalose-6-Ph 85.5 3.1 6.8E-05 42.8 8.0 105 346-481 345-459 (460)
155 COG0496 SurE Predicted acid ph 85.0 8.5 0.00018 35.6 9.5 113 8-148 1-126 (252)
156 PF06258 Mito_fiss_Elm1: Mitoc 84.8 39 0.00085 32.6 15.7 122 281-411 146-282 (311)
157 COG0859 RfaF ADP-heptose:LPS h 84.0 45 0.00096 32.6 19.4 105 7-144 1-107 (334)
158 TIGR02919 accessory Sec system 83.8 22 0.00048 36.2 13.0 80 342-443 328-412 (438)
159 PF02310 B12-binding: B12 bind 81.3 5.4 0.00012 32.2 6.3 48 8-55 1-48 (121)
160 PRK13933 stationary phase surv 80.3 11 0.00023 35.2 8.5 39 8-48 1-39 (253)
161 PF02441 Flavoprotein: Flavopr 80.3 2.4 5.1E-05 35.1 3.9 40 8-48 1-40 (129)
162 TIGR02370 pyl_corrinoid methyl 79.8 19 0.00041 32.2 9.8 51 6-56 83-133 (197)
163 PRK00346 surE 5'(3')-nucleotid 76.9 14 0.00031 34.3 8.2 39 8-48 1-39 (250)
164 PLN03063 alpha,alpha-trehalose 76.4 9.1 0.0002 42.3 8.0 102 353-485 370-479 (797)
165 PF04413 Glycos_transf_N: 3-De 76.1 11 0.00023 33.4 7.0 99 9-146 22-125 (186)
166 COG4370 Uncharacterized protei 76.0 5.9 0.00013 37.4 5.4 85 348-450 301-387 (412)
167 PF01975 SurE: Survival protei 75.9 4.5 9.8E-05 36.1 4.6 120 8-148 1-134 (196)
168 cd02070 corrinoid_protein_B12- 75.1 11 0.00025 33.7 7.1 50 6-55 81-130 (201)
169 PF07429 Glyco_transf_56: 4-al 75.1 56 0.0012 31.9 11.7 136 284-441 186-332 (360)
170 cd03793 GT1_Glycogen_synthase_ 74.9 9 0.00019 40.1 6.9 79 352-442 468-552 (590)
171 PRK13935 stationary phase surv 73.6 37 0.00081 31.6 10.0 39 8-48 1-39 (253)
172 PF02142 MGS: MGS-like domain 73.5 3.9 8.5E-05 31.6 3.2 84 24-143 2-94 (95)
173 COG2185 Sbm Methylmalonyl-CoA 73.1 9.7 0.00021 31.8 5.5 46 5-50 10-55 (143)
174 PRK02797 4-alpha-L-fucosyltran 73.0 77 0.0017 30.5 12.0 134 284-439 147-291 (322)
175 PF02951 GSH-S_N: Prokaryotic 72.7 6 0.00013 32.1 4.1 37 8-44 1-40 (119)
176 PRK08305 spoVFB dipicolinate s 72.4 6.3 0.00014 35.1 4.5 43 5-47 3-45 (196)
177 cd01974 Nitrogenase_MoFe_beta 71.4 63 0.0014 32.9 12.2 35 107-146 368-402 (435)
178 COG0438 RfaG Glycosyltransfera 71.2 93 0.002 29.3 16.5 81 341-443 256-343 (381)
179 cd02071 MM_CoA_mut_B12_BD meth 70.6 13 0.00027 30.4 5.7 46 9-54 1-46 (122)
180 PRK06718 precorrin-2 dehydroge 69.9 26 0.00057 31.4 8.1 146 281-463 11-165 (202)
181 PF12146 Hydrolase_4: Putative 69.1 12 0.00026 27.8 4.8 36 7-42 15-50 (79)
182 TIGR00715 precor6x_red precorr 68.4 29 0.00062 32.5 8.2 37 107-145 56-98 (256)
183 PF00551 Formyl_trans_N: Formy 68.3 55 0.0012 28.7 9.7 105 8-147 1-109 (181)
184 smart00851 MGS MGS-like domain 66.2 45 0.00097 25.3 7.7 34 108-143 47-89 (90)
185 PF02571 CbiJ: Precorrin-6x re 65.5 28 0.00061 32.4 7.6 38 106-145 56-99 (249)
186 PRK01077 cobyrinic acid a,c-di 64.5 81 0.0017 32.4 11.4 38 7-44 3-41 (451)
187 TIGR02655 circ_KaiC circadian 64.4 79 0.0017 32.8 11.4 50 8-57 264-313 (484)
188 cd01121 Sms Sms (bacterial rad 64.1 1.1E+02 0.0023 30.5 11.8 45 9-53 84-128 (372)
189 COG0541 Ffh Signal recognition 64.0 1.7E+02 0.0037 29.6 12.8 62 6-68 99-160 (451)
190 PRK06321 replicative DNA helic 63.4 98 0.0021 31.9 11.7 41 10-50 229-270 (472)
191 PRK05647 purN phosphoribosylgl 63.4 88 0.0019 28.0 10.1 86 8-127 2-89 (200)
192 PF05159 Capsule_synth: Capsul 63.3 23 0.00049 33.4 6.7 43 343-388 184-226 (269)
193 cd02069 methionine_synthase_B1 62.9 28 0.00061 31.5 6.9 51 6-56 87-137 (213)
194 PRK05595 replicative DNA helic 62.1 75 0.0016 32.5 10.7 43 10-52 204-247 (444)
195 PF00731 AIRC: AIR carboxylase 61.7 62 0.0014 27.4 8.2 138 284-462 3-148 (150)
196 PRK05986 cob(I)alamin adenolsy 61.5 1.1E+02 0.0023 27.3 9.9 102 6-128 21-125 (191)
197 TIGR01470 cysG_Nterm siroheme 61.3 71 0.0015 28.7 9.2 149 281-463 10-165 (205)
198 PF04127 DFP: DNA / pantothena 61.3 6 0.00013 35.0 2.2 39 7-45 3-53 (185)
199 COG0003 ArsA Predicted ATPase 61.2 90 0.0019 30.3 10.3 41 8-48 2-43 (322)
200 COG1618 Predicted nucleotide k 60.4 51 0.0011 28.4 7.3 39 6-44 4-42 (179)
201 COG0552 FtsY Signal recognitio 60.3 1.1E+02 0.0024 29.7 10.4 63 5-68 137-199 (340)
202 cd01124 KaiC KaiC is a circadi 60.3 36 0.00077 29.7 7.1 47 10-56 2-48 (187)
203 cd01424 MGS_CPS_II Methylglyox 60.0 84 0.0018 24.8 8.6 84 19-144 10-100 (110)
204 cd01965 Nitrogenase_MoFe_beta_ 59.9 85 0.0018 31.9 10.6 35 106-145 361-395 (428)
205 TIGR01501 MthylAspMutase methy 59.0 43 0.00094 27.8 6.7 57 8-69 2-58 (134)
206 cd07038 TPP_PYR_PDC_IPDC_like 58.8 55 0.0012 28.1 7.8 26 363-388 62-93 (162)
207 cd07039 TPP_PYR_POX Pyrimidine 58.3 1.1E+02 0.0024 26.3 9.6 25 364-388 67-97 (164)
208 COG0052 RpsB Ribosomal protein 58.1 1.3E+02 0.0028 27.8 10.0 31 117-147 155-187 (252)
209 COG1066 Sms Predicted ATP-depe 57.9 76 0.0016 31.8 9.1 47 9-56 95-141 (456)
210 PF01075 Glyco_transf_9: Glyco 57.5 31 0.00068 31.8 6.5 98 281-386 105-208 (247)
211 TIGR02015 BchY chlorophyllide 57.5 1.1E+02 0.0023 31.2 10.6 30 111-145 350-379 (422)
212 PRK07313 phosphopantothenoylcy 57.4 14 0.0003 32.6 3.8 42 8-50 2-43 (182)
213 PRK08506 replicative DNA helic 56.6 1.3E+02 0.0028 31.1 11.3 44 9-52 194-237 (472)
214 TIGR00064 ftsY signal recognit 56.5 1.5E+02 0.0032 28.1 10.8 40 7-46 72-111 (272)
215 PRK06067 flagellar accessory p 56.1 40 0.00086 30.9 6.9 49 8-56 26-74 (234)
216 PRK09165 replicative DNA helic 54.8 1.2E+02 0.0025 31.6 10.7 43 10-52 220-277 (497)
217 cd01980 Chlide_reductase_Y Chl 54.7 1.2E+02 0.0027 30.7 10.6 26 117-145 349-374 (416)
218 PRK11823 DNA repair protein Ra 54.3 1.8E+02 0.0038 29.9 11.7 46 9-54 82-127 (446)
219 PRK13931 stationary phase surv 54.1 94 0.002 29.2 8.9 112 9-147 2-129 (261)
220 PRK10867 signal recognition pa 53.7 82 0.0018 32.0 9.1 47 7-53 100-147 (433)
221 COG1703 ArgK Putative periplas 53.7 44 0.00095 31.9 6.5 41 5-45 49-89 (323)
222 PRK13982 bifunctional SbtC-lik 53.6 29 0.00063 35.6 5.8 41 5-45 254-306 (475)
223 TIGR02852 spore_dpaB dipicolin 53.5 16 0.00036 32.2 3.6 38 8-45 1-38 (187)
224 PRK05636 replicative DNA helic 53.3 82 0.0018 32.8 9.2 42 9-50 267-309 (505)
225 cd03466 Nitrogenase_NifN_2 Nit 53.2 1.8E+02 0.0039 29.6 11.6 35 106-145 362-396 (429)
226 PRK08760 replicative DNA helic 52.8 90 0.0019 32.3 9.4 44 9-52 231-275 (476)
227 COG1484 DnaC DNA replication p 52.5 24 0.00052 33.0 4.8 46 6-51 104-149 (254)
228 cd01968 Nitrogenase_NifE_I Nit 52.4 1.6E+02 0.0034 29.8 11.0 34 107-145 347-380 (410)
229 PF09314 DUF1972: Domain of un 51.8 1.7E+02 0.0036 25.9 9.6 55 9-70 3-62 (185)
230 TIGR03880 KaiC_arch_3 KaiC dom 51.5 1.9E+02 0.004 26.2 11.3 48 8-55 17-64 (224)
231 TIGR00959 ffh signal recogniti 51.4 1.6E+02 0.0035 29.9 10.7 48 7-54 99-147 (428)
232 PRK14478 nitrogenase molybdenu 51.2 1.9E+02 0.0042 29.8 11.6 33 107-144 384-416 (475)
233 PF10083 DUF2321: Uncharacteri 51.1 31 0.00067 29.1 4.6 74 386-484 78-152 (158)
234 PRK14099 glycogen synthase; Pr 50.9 24 0.00052 36.6 4.9 95 342-453 350-458 (485)
235 PRK00090 bioD dithiobiotin syn 50.9 1.4E+02 0.0031 26.9 9.7 34 10-43 2-36 (222)
236 TIGR03600 phage_DnaB phage rep 50.8 1.9E+02 0.0042 29.2 11.4 44 9-52 196-240 (421)
237 TIGR00665 DnaB replicative DNA 50.6 1.9E+02 0.0041 29.4 11.4 44 9-52 197-241 (434)
238 PF01210 NAD_Gly3P_dh_N: NAD-d 50.3 12 0.00025 32.1 2.1 32 9-45 1-32 (157)
239 TIGR01283 nifE nitrogenase mol 49.1 2.6E+02 0.0057 28.7 12.1 35 106-145 385-419 (456)
240 COG0801 FolK 7,8-dihydro-6-hyd 48.8 35 0.00077 29.2 4.7 29 283-311 3-31 (160)
241 cd02065 B12-binding_like B12 b 48.8 52 0.0011 26.4 5.8 45 10-54 2-46 (125)
242 PRK08057 cobalt-precorrin-6x r 48.6 90 0.0019 29.1 7.8 91 7-145 2-98 (248)
243 PRK06029 3-octaprenyl-4-hydrox 48.4 28 0.00061 30.7 4.3 42 8-50 2-44 (185)
244 cd00561 CobA_CobO_BtuR ATP:cor 48.4 1.8E+02 0.0038 25.0 11.1 99 9-128 4-105 (159)
245 TIGR00639 PurN phosphoribosylg 48.3 2E+02 0.0043 25.5 11.3 104 8-145 1-107 (190)
246 PRK12342 hypothetical protein; 48.2 33 0.00072 32.0 4.9 39 107-147 100-144 (254)
247 PRK09620 hypothetical protein; 48.0 29 0.00063 31.9 4.5 39 6-44 2-52 (229)
248 PRK05748 replicative DNA helic 48.0 2E+02 0.0044 29.4 11.2 44 9-52 205-249 (448)
249 PRK11889 flhF flagellar biosyn 47.9 1.8E+02 0.0039 29.4 10.0 41 7-47 241-281 (436)
250 KOG1250 Threonine/serine dehyd 47.3 3.1E+02 0.0066 27.4 11.4 18 426-443 300-317 (457)
251 PRK05920 aromatic acid decarbo 47.1 28 0.00061 31.3 4.1 43 7-50 3-45 (204)
252 PRK13789 phosphoribosylamine-- 46.9 71 0.0015 32.5 7.5 36 6-46 3-38 (426)
253 TIGR02398 gluc_glyc_Psyn gluco 46.4 3.4E+02 0.0074 28.2 12.3 113 344-487 364-486 (487)
254 TIGR00640 acid_CoA_mut_C methy 46.3 97 0.0021 25.6 6.9 47 6-52 1-47 (132)
255 PLN02470 acetolactate synthase 46.2 55 0.0012 34.9 6.9 92 287-387 2-109 (585)
256 PRK14501 putative bifunctional 46.2 44 0.00094 36.7 6.3 112 345-484 345-463 (726)
257 PRK06732 phosphopantothenate-- 46.1 27 0.00058 32.1 4.0 37 8-44 1-49 (229)
258 PRK07773 replicative DNA helic 45.9 1.9E+02 0.0041 32.7 11.2 44 9-52 219-263 (886)
259 TIGR03877 thermo_KaiC_1 KaiC d 45.8 2.4E+02 0.0051 25.9 10.3 50 7-56 21-70 (237)
260 cd07035 TPP_PYR_POX_like Pyrim 45.7 1.6E+02 0.0034 24.7 8.6 26 363-388 62-93 (155)
261 PRK04328 hypothetical protein; 44.9 2.2E+02 0.0048 26.4 10.0 49 8-56 24-72 (249)
262 PF02585 PIG-L: GlcNAc-PI de-N 44.1 1.7E+02 0.0037 23.6 8.2 23 102-126 86-108 (128)
263 PRK13604 luxD acyl transferase 43.9 51 0.0011 31.8 5.5 37 6-42 35-71 (307)
264 TIGR00347 bioD dethiobiotin sy 43.8 2E+02 0.0044 24.4 10.0 29 14-42 5-33 (166)
265 TIGR00421 ubiX_pad polyprenyl 43.8 27 0.00059 30.7 3.5 41 9-50 1-41 (181)
266 COG2874 FlaH Predicted ATPases 43.8 2.4E+02 0.0051 25.7 9.1 93 17-131 38-136 (235)
267 PF06925 MGDG_synth: Monogalac 43.5 42 0.0009 29.0 4.6 43 103-147 76-124 (169)
268 TIGR00416 sms DNA repair prote 43.4 2.4E+02 0.0053 28.9 10.7 44 9-52 96-139 (454)
269 PRK06249 2-dehydropantoate 2-r 42.8 30 0.00065 33.5 4.0 34 6-44 4-37 (313)
270 PF09001 DUF1890: Domain of un 42.7 44 0.00096 27.6 4.2 29 17-45 9-37 (139)
271 PRK06849 hypothetical protein; 42.6 46 0.00099 33.3 5.4 36 6-45 3-38 (389)
272 cd07037 TPP_PYR_MenD Pyrimidin 42.3 80 0.0017 27.2 6.1 25 364-388 64-94 (162)
273 PRK05632 phosphate acetyltrans 41.9 2.6E+02 0.0055 30.6 11.2 36 9-44 4-40 (684)
274 PRK03359 putative electron tra 41.0 52 0.0011 30.8 5.0 39 107-147 103-147 (256)
275 COG2159 Predicted metal-depend 40.5 1.4E+02 0.0031 28.5 8.1 94 269-377 116-211 (293)
276 cd01452 VWA_26S_proteasome_sub 40.3 2.4E+02 0.0052 24.9 8.9 62 8-70 108-173 (187)
277 PRK12475 thiamine/molybdopteri 40.2 2.7E+02 0.0058 27.3 10.1 33 6-43 23-56 (338)
278 CHL00072 chlL photochlorophyll 40.1 50 0.0011 31.5 5.0 34 8-41 1-34 (290)
279 PLN02939 transferase, transfer 39.6 48 0.001 37.1 5.2 41 5-45 479-525 (977)
280 PF10093 DUF2331: Uncharacteri 39.3 57 0.0012 32.2 5.2 85 290-384 188-286 (374)
281 TIGR01007 eps_fam capsular exo 39.0 57 0.0012 29.1 5.0 38 7-44 16-55 (204)
282 TIGR03878 thermo_KaiC_2 KaiC d 38.6 3.3E+02 0.0072 25.4 12.6 40 8-47 37-76 (259)
283 TIGR02699 archaeo_AfpA archaeo 38.5 46 0.00099 29.1 4.0 39 9-48 1-41 (174)
284 PRK06522 2-dehydropantoate 2-r 38.4 40 0.00086 32.2 4.1 31 8-43 1-31 (304)
285 cd02032 Bchl_like This family 38.3 51 0.0011 30.9 4.7 34 8-41 1-34 (267)
286 PRK00784 cobyric acid synthase 38.2 2.7E+02 0.0058 28.9 10.3 35 9-43 4-39 (488)
287 PF04464 Glyphos_transf: CDP-G 37.7 15 0.00034 36.3 1.1 116 341-478 251-367 (369)
288 PF08323 Glyco_transf_5: Starc 37.6 26 0.00056 32.5 2.5 22 24-45 22-43 (245)
289 TIGR02237 recomb_radB DNA repa 37.5 2.9E+02 0.0064 24.4 10.6 46 9-54 14-60 (209)
290 PRK05579 bifunctional phosphop 37.4 59 0.0013 32.7 5.1 45 5-50 4-48 (399)
291 PF04244 DPRP: Deoxyribodipyri 37.4 51 0.0011 30.1 4.3 26 20-45 47-72 (224)
292 PF05225 HTH_psq: helix-turn-h 37.3 62 0.0013 21.0 3.5 27 428-457 1-27 (45)
293 PRK14477 bifunctional nitrogen 37.3 3.8E+02 0.0083 30.4 11.9 35 107-146 380-414 (917)
294 PF02776 TPP_enzyme_N: Thiamin 37.3 77 0.0017 27.4 5.3 25 364-388 68-98 (172)
295 KOG1387 Glycosyltransferase [C 37.2 4.2E+02 0.009 26.1 22.0 305 94-481 129-459 (465)
296 KOG0853 Glycosyltransferase [C 37.1 30 0.00065 35.5 3.0 66 372-455 381-446 (495)
297 TIGR02113 coaC_strep phosphopa 37.1 36 0.00079 29.8 3.2 39 9-48 2-40 (177)
298 PF06745 KaiC: KaiC; InterPro 37.1 89 0.0019 28.3 6.0 49 8-56 20-69 (226)
299 PRK07004 replicative DNA helic 37.1 3.9E+02 0.0084 27.5 11.1 43 9-51 215-258 (460)
300 TIGR00379 cobB cobyrinic acid 36.8 3.6E+02 0.0078 27.6 10.9 35 10-44 2-37 (449)
301 PRK12921 2-dehydropantoate 2-r 36.0 43 0.00094 32.0 3.9 31 8-43 1-31 (305)
302 TIGR00521 coaBC_dfp phosphopan 35.9 52 0.0011 33.0 4.4 44 6-50 2-45 (390)
303 PRK14098 glycogen synthase; Pr 35.9 61 0.0013 33.7 5.1 37 6-44 4-48 (489)
304 COG1004 Ugd Predicted UDP-gluc 35.7 1.3E+02 0.0029 29.9 7.0 29 8-41 1-29 (414)
305 cd01840 SGNH_hydrolase_yrhL_li 35.7 97 0.0021 26.0 5.6 39 280-319 50-88 (150)
306 PF05728 UPF0227: Uncharacteri 35.2 74 0.0016 28.1 4.9 45 106-150 47-92 (187)
307 TIGR01281 DPOR_bchL light-inde 35.0 62 0.0014 30.3 4.7 34 8-41 1-34 (268)
308 PF02374 ArsA_ATPase: Anion-tr 35.0 54 0.0012 31.6 4.3 41 8-48 1-42 (305)
309 PRK06456 acetolactate synthase 34.8 1.5E+02 0.0033 31.4 8.1 25 363-387 71-101 (572)
310 TIGR02329 propionate_PrpR prop 34.7 3.2E+02 0.0068 28.7 10.1 116 18-148 36-172 (526)
311 PRK06276 acetolactate synthase 34.6 1.6E+02 0.0035 31.4 8.3 26 362-387 65-96 (586)
312 cd07025 Peptidase_S66 LD-Carbo 34.5 66 0.0014 30.6 4.8 75 294-390 46-122 (282)
313 KOG2836 Protein tyrosine phosp 34.4 1.6E+02 0.0035 24.3 6.0 55 6-72 15-71 (173)
314 KOG0780 Signal recognition par 34.0 2.2E+02 0.0048 28.4 8.0 42 8-49 102-143 (483)
315 cd01423 MGS_CPS_I_III Methylgl 33.6 2.4E+02 0.0053 22.4 8.7 87 20-144 11-106 (116)
316 PF07905 PucR: Purine cataboli 32.8 2.6E+02 0.0057 22.6 7.5 45 268-316 33-78 (123)
317 PRK06988 putative formyltransf 32.8 3.7E+02 0.008 26.0 9.7 33 7-44 2-34 (312)
318 PRK14619 NAD(P)H-dependent gly 32.7 1.1E+02 0.0024 29.5 6.1 34 6-44 3-36 (308)
319 TIGR00725 conserved hypothetic 32.5 1.2E+02 0.0026 26.0 5.6 99 270-390 22-125 (159)
320 TIGR00313 cobQ cobyric acid sy 32.5 5.8E+02 0.013 26.4 11.8 28 17-44 9-36 (475)
321 COG2894 MinD Septum formation 32.4 82 0.0018 28.7 4.5 38 9-46 3-42 (272)
322 cd01421 IMPCH Inosine monophos 32.3 1.8E+02 0.0039 25.7 6.6 90 21-127 10-100 (187)
323 PRK09302 circadian clock prote 32.3 97 0.0021 32.3 6.0 48 8-55 274-321 (509)
324 cd02072 Glm_B12_BD B12 binding 32.1 1.7E+02 0.0038 24.0 6.1 46 9-54 1-46 (128)
325 PRK08322 acetolactate synthase 31.9 1.8E+02 0.0039 30.6 8.1 27 361-387 64-96 (547)
326 COG4088 Predicted nucleotide k 31.8 63 0.0014 29.1 3.7 36 9-44 3-38 (261)
327 PRK07206 hypothetical protein; 31.7 1.6E+02 0.0035 29.6 7.4 32 8-44 3-34 (416)
328 COG3660 Predicted nucleoside-d 31.6 4.5E+02 0.0097 24.8 18.4 77 302-386 189-271 (329)
329 COG1422 Predicted membrane pro 31.3 1E+02 0.0023 27.3 4.9 82 372-480 24-106 (201)
330 PF02826 2-Hacid_dh_C: D-isome 31.3 1.2E+02 0.0026 26.4 5.6 105 280-438 36-143 (178)
331 TIGR02700 flavo_MJ0208 archaeo 31.2 69 0.0015 29.5 4.2 40 9-48 1-42 (234)
332 CHL00076 chlB photochlorophyll 31.2 69 0.0015 33.5 4.7 36 106-146 364-399 (513)
333 TIGR00173 menD 2-succinyl-5-en 30.5 2.8E+02 0.006 28.2 8.9 24 363-386 66-95 (432)
334 COG0467 RAD55 RecA-superfamily 30.4 1.6E+02 0.0034 27.5 6.6 50 7-56 23-72 (260)
335 COG4081 Uncharacterized protei 30.4 81 0.0018 25.7 3.8 36 9-44 5-41 (148)
336 PRK06719 precorrin-2 dehydroge 30.3 71 0.0015 27.3 3.8 34 6-44 12-45 (157)
337 cd02034 CooC The accessory pro 30.2 1E+02 0.0022 24.8 4.5 37 9-45 1-37 (116)
338 PRK09739 hypothetical protein; 30.2 1.2E+02 0.0027 26.9 5.6 37 6-42 2-41 (199)
339 PRK06270 homoserine dehydrogen 30.1 3.6E+02 0.0077 26.4 9.2 59 351-410 80-150 (341)
340 PF02702 KdpD: Osmosensitive K 29.9 91 0.002 27.9 4.4 39 6-44 4-42 (211)
341 PRK08155 acetolactate synthase 29.8 1.3E+02 0.0028 31.9 6.5 26 362-387 78-109 (564)
342 PF03721 UDPG_MGDP_dh_N: UDP-g 29.7 78 0.0017 27.9 4.1 31 8-43 1-31 (185)
343 cd00316 Oxidoreductase_nitroge 29.6 5.7E+02 0.012 25.4 11.5 35 106-145 338-372 (399)
344 PRK00207 sulfur transfer compl 29.5 94 0.002 25.5 4.3 25 20-44 16-41 (128)
345 cd01425 RPS2 Ribosomal protein 29.2 4.1E+02 0.0088 23.6 8.9 33 116-148 125-159 (193)
346 cd01141 TroA_d Periplasmic bin 29.2 86 0.0019 27.3 4.4 38 106-146 60-99 (186)
347 PF12695 Abhydrolase_5: Alpha/ 29.2 1E+02 0.0022 25.1 4.6 35 10-44 1-35 (145)
348 cd01976 Nitrogenase_MoFe_alpha 29.2 68 0.0015 32.5 4.1 35 106-145 359-393 (421)
349 COG2099 CobK Precorrin-6x redu 29.1 4.2E+02 0.009 24.7 8.6 38 390-437 183-220 (257)
350 PRK08229 2-dehydropantoate 2-r 29.1 60 0.0013 31.7 3.7 32 8-44 3-34 (341)
351 TIGR03018 pepcterm_TyrKin exop 29.1 1.2E+02 0.0026 27.1 5.4 39 6-44 33-74 (207)
352 cd00861 ProRS_anticodon_short 29.0 98 0.0021 23.3 4.2 36 8-43 2-39 (94)
353 PRK10353 3-methyl-adenine DNA 28.9 1.8E+02 0.0039 25.7 6.1 86 384-477 21-119 (187)
354 PRK04940 hypothetical protein; 28.9 1.2E+02 0.0026 26.7 5.0 31 118-148 60-91 (180)
355 PF02558 ApbA: Ketopantoate re 28.8 79 0.0017 26.4 3.9 20 26-45 12-31 (151)
356 COG0287 TyrA Prephenate dehydr 28.8 5.1E+02 0.011 24.6 9.9 42 7-53 3-44 (279)
357 TIGR00708 cobA cob(I)alamin ad 28.8 3.9E+02 0.0086 23.3 11.3 99 8-128 6-107 (173)
358 PRK12825 fabG 3-ketoacyl-(acyl 28.7 2.9E+02 0.0064 24.8 8.2 39 1-44 1-39 (249)
359 COG0297 GlgA Glycogen synthase 28.6 2E+02 0.0043 29.9 7.3 160 296-488 309-482 (487)
360 TIGR01285 nifN nitrogenase mol 28.6 90 0.0019 31.8 4.9 34 107-145 364-397 (432)
361 PF13450 NAD_binding_8: NAD(P) 28.5 70 0.0015 22.8 3.0 20 25-44 9-28 (68)
362 COG2210 Peroxiredoxin family p 28.5 1.1E+02 0.0025 25.3 4.4 34 11-44 7-40 (137)
363 COG2910 Putative NADH-flavin r 28.5 54 0.0012 28.9 2.7 33 8-44 1-33 (211)
364 PRK11064 wecC UDP-N-acetyl-D-m 28.5 77 0.0017 32.1 4.4 32 7-43 3-34 (415)
365 KOG0541 Alkyl hydroperoxide re 28.5 1.4E+02 0.0031 25.4 5.0 61 7-68 43-110 (171)
366 PF03446 NAD_binding_2: NAD bi 28.0 62 0.0013 27.7 3.2 31 7-42 1-31 (163)
367 PRK13234 nifH nitrogenase redu 28.0 1.1E+02 0.0024 29.2 5.2 34 8-41 5-38 (295)
368 PF07355 GRDB: Glycine/sarcosi 27.9 1.1E+02 0.0024 29.8 5.0 42 102-145 66-117 (349)
369 cd01981 Pchlide_reductase_B Pc 27.8 92 0.002 31.7 4.8 35 107-146 361-395 (430)
370 COG0503 Apt Adenine/guanine ph 27.7 1.4E+02 0.003 26.2 5.3 37 107-145 44-82 (179)
371 PRK07710 acetolactate synthase 27.5 1.7E+02 0.0037 31.1 7.0 24 364-387 82-111 (571)
372 PF01470 Peptidase_C15: Pyrogl 27.4 1E+02 0.0022 27.6 4.5 45 8-52 1-50 (202)
373 COG0240 GpsA Glycerol-3-phosph 27.3 80 0.0017 30.6 3.9 33 7-44 1-33 (329)
374 TIGR01286 nifK nitrogenase mol 27.1 91 0.002 32.6 4.7 32 109-145 430-461 (515)
375 cd02040 NifH NifH gene encodes 27.0 1.1E+02 0.0023 28.7 4.8 33 9-41 3-35 (270)
376 PRK02910 light-independent pro 26.9 96 0.0021 32.5 4.8 35 107-146 353-387 (519)
377 KOG3339 Predicted glycosyltran 26.9 3.1E+02 0.0067 24.2 6.9 24 11-34 41-64 (211)
378 COG2085 Predicted dinucleotide 26.8 98 0.0021 27.9 4.1 33 8-45 2-34 (211)
379 PRK13196 pyrrolidone-carboxyla 26.8 1.3E+02 0.0028 27.3 5.0 40 7-46 1-45 (211)
380 PRK12724 flagellar biosynthesi 26.8 5.4E+02 0.012 26.2 9.7 43 8-50 224-267 (432)
381 PRK00843 egsA NAD(P)-dependent 26.7 4.7E+02 0.01 25.6 9.5 113 6-149 3-121 (350)
382 COG3349 Uncharacterized conser 26.7 65 0.0014 33.1 3.4 32 8-44 1-32 (485)
383 cd01075 NAD_bind_Leu_Phe_Val_D 26.7 99 0.0022 27.6 4.3 33 4-41 25-57 (200)
384 TIGR01278 DPOR_BchB light-inde 26.7 97 0.0021 32.4 4.8 36 107-147 355-390 (511)
385 PRK08673 3-deoxy-7-phosphohept 26.4 4.2E+02 0.0091 26.0 8.7 100 283-411 179-298 (335)
386 cd01715 ETF_alpha The electron 26.4 4.1E+02 0.0089 22.7 9.9 40 104-145 71-113 (168)
387 COG1090 Predicted nucleoside-d 26.3 5.7E+02 0.012 24.3 9.0 35 92-126 76-110 (297)
388 COG2120 Uncharacterized protei 26.2 1.1E+02 0.0025 28.1 4.7 39 5-43 8-46 (237)
389 COG0771 MurD UDP-N-acetylmuram 26.2 1E+02 0.0022 31.4 4.7 37 2-44 3-39 (448)
390 PRK00923 sirohydrochlorin coba 26.1 3.5E+02 0.0076 21.8 8.3 35 282-316 3-39 (126)
391 cd07062 Peptidase_S66_mccF_lik 26.1 1E+02 0.0022 29.8 4.5 74 294-389 50-125 (308)
392 cd01020 TroA_b Metal binding p 26.0 5.1E+02 0.011 24.2 9.2 34 430-463 105-140 (264)
393 PRK02155 ppnK NAD(+)/NADH kina 26.0 1.4E+02 0.003 28.6 5.3 28 358-387 63-94 (291)
394 PRK14569 D-alanyl-alanine synt 25.6 1.3E+02 0.0028 28.7 5.2 37 6-42 2-42 (296)
395 PRK13869 plasmid-partitioning 25.6 1.1E+02 0.0023 30.9 4.8 35 7-41 120-156 (405)
396 PF00448 SRP54: SRP54-type pro 25.6 2.2E+02 0.0048 25.3 6.3 59 9-68 3-61 (196)
397 KOG0832 Mitochondrial/chloropl 25.5 1.8E+02 0.004 26.5 5.5 113 17-148 90-205 (251)
398 TIGR03837 efp_adjacent_2 conse 25.5 88 0.0019 30.8 3.9 30 15-44 8-38 (371)
399 PRK12744 short chain dehydroge 25.4 3.8E+02 0.0082 24.5 8.3 39 1-42 1-39 (257)
400 cd01983 Fer4_NifH The Fer4_Nif 25.3 1.6E+02 0.0034 21.7 4.8 33 10-42 2-34 (99)
401 PF01371 Trp_repressor: Trp re 25.2 1.9E+02 0.0042 21.9 4.9 44 427-476 14-57 (87)
402 PRK07525 sulfoacetaldehyde ace 24.9 3.5E+02 0.0076 28.8 8.8 27 361-387 69-101 (588)
403 PRK03094 hypothetical protein; 24.9 67 0.0014 23.9 2.3 21 24-44 10-30 (80)
404 PF00148 Oxidored_nitro: Nitro 24.9 7E+02 0.015 24.8 11.3 34 107-145 332-365 (398)
405 PF01695 IstB_IS21: IstB-like 24.8 94 0.002 27.2 3.7 39 6-44 46-84 (178)
406 PF06506 PrpR_N: Propionate ca 24.6 1.1E+02 0.0023 26.7 4.1 31 359-390 33-63 (176)
407 COG2109 BtuR ATP:corrinoid ade 24.5 5E+02 0.011 23.1 10.7 99 10-129 31-133 (198)
408 PRK13236 nitrogenase reductase 24.3 1.5E+02 0.0033 28.3 5.4 33 9-41 8-40 (296)
409 COG0569 TrkA K+ transport syst 24.3 90 0.002 28.5 3.6 32 8-44 1-32 (225)
410 PF06180 CbiK: Cobalt chelatas 24.2 1.2E+02 0.0025 28.6 4.4 38 283-320 3-43 (262)
411 PF03720 UDPG_MGDP_dh_C: UDP-g 24.2 92 0.002 24.5 3.2 26 22-47 17-42 (106)
412 TIGR00661 MJ1255 conserved hyp 24.1 1.2E+02 0.0026 29.3 4.7 28 358-387 93-120 (321)
413 COG3195 Uncharacterized protei 24.1 4.2E+02 0.009 22.9 7.0 76 371-461 88-164 (176)
414 COG2084 MmsB 3-hydroxyisobutyr 24.1 1E+02 0.0022 29.3 4.0 32 8-44 1-32 (286)
415 PRK14618 NAD(P)H-dependent gly 24.0 1E+02 0.0022 29.9 4.2 33 7-44 4-36 (328)
416 TIGR03837 efp_adjacent_2 conse 24.0 1.5E+02 0.0032 29.3 5.1 97 295-397 191-295 (371)
417 TIGR03026 NDP-sugDHase nucleot 23.8 1E+02 0.0022 31.1 4.3 31 8-43 1-31 (411)
418 PRK04148 hypothetical protein; 23.7 1.5E+02 0.0033 24.6 4.4 31 6-42 16-46 (134)
419 PRK05541 adenylylsulfate kinas 23.7 1.9E+02 0.0041 24.9 5.5 42 1-42 1-42 (176)
420 TIGR03029 EpsG chain length de 23.6 1.5E+02 0.0032 27.9 5.1 38 6-43 101-140 (274)
421 PF06506 PrpR_N: Propionate ca 23.6 1E+02 0.0023 26.8 3.8 118 18-150 16-154 (176)
422 COG1578 Uncharacterized conser 23.5 3.8E+02 0.0081 25.2 7.2 62 429-490 54-141 (285)
423 PRK13230 nitrogenase reductase 23.4 1.4E+02 0.003 28.2 4.9 34 8-41 2-35 (279)
424 cd03412 CbiK_N Anaerobic cobal 23.2 1.4E+02 0.0031 24.3 4.3 38 282-319 2-41 (127)
425 PF02780 Transketolase_C: Tran 23.0 1.4E+02 0.003 24.1 4.2 36 6-43 8-43 (124)
426 cd03416 CbiX_SirB_N Sirohydroc 23.0 2.8E+02 0.0061 21.2 5.8 35 283-317 2-38 (101)
427 PF01372 Melittin: Melittin; 23.0 18 0.00039 19.9 -0.7 17 369-385 1-17 (26)
428 KOG2585 Uncharacterized conser 22.9 1.5E+02 0.0033 29.8 4.9 37 5-44 264-302 (453)
429 TIGR03453 partition_RepA plasm 22.8 1.4E+02 0.0031 29.8 5.0 37 6-42 102-140 (387)
430 PRK05973 replicative DNA helic 22.8 2.2E+02 0.0048 26.3 5.8 49 8-56 65-113 (237)
431 COG4394 Uncharacterized protei 22.6 1.5E+02 0.0032 28.1 4.5 87 290-384 182-280 (370)
432 PF00070 Pyr_redox: Pyridine n 22.5 1.3E+02 0.0027 22.0 3.6 23 23-45 10-32 (80)
433 PRK13982 bifunctional SbtC-lik 22.3 1.3E+02 0.0027 31.1 4.5 45 6-51 69-113 (475)
434 PRK13195 pyrrolidone-carboxyla 22.2 1.6E+02 0.0034 26.9 4.6 38 7-44 1-43 (222)
435 PRK13194 pyrrolidone-carboxyla 22.1 1.8E+02 0.0039 26.2 5.0 47 8-54 1-52 (208)
436 PRK09219 xanthine phosphoribos 22.1 1.9E+02 0.0042 25.6 5.1 40 105-146 39-80 (189)
437 TIGR00118 acolac_lg acetolacta 21.9 2.8E+02 0.006 29.3 7.3 25 363-387 67-97 (558)
438 COG2179 Predicted hydrolase of 21.9 4.5E+02 0.0097 22.8 6.9 27 120-147 113-139 (175)
439 PRK14092 2-amino-4-hydroxy-6-h 21.8 1.9E+02 0.0042 24.9 4.9 28 282-309 8-35 (163)
440 TIGR01696 deoB phosphopentomut 21.8 7.1E+02 0.015 24.9 9.4 45 25-69 217-277 (381)
441 PF10933 DUF2827: Protein of u 21.8 2.1E+02 0.0045 28.1 5.6 106 341-481 252-363 (364)
442 PRK13235 nifH nitrogenase redu 21.8 1.5E+02 0.0032 27.9 4.7 33 9-41 3-35 (274)
443 PLN02695 GDP-D-mannose-3',5'-e 21.8 1.7E+02 0.0038 28.9 5.4 34 6-43 20-53 (370)
444 PRK11269 glyoxylate carboligas 21.7 4.2E+02 0.0092 28.2 8.6 24 364-387 72-101 (591)
445 PRK12311 rpsB 30S ribosomal pr 21.6 7.6E+02 0.017 24.1 10.7 32 117-148 151-184 (326)
446 PLN00016 RNA-binding protein; 21.5 1.2E+02 0.0025 30.2 4.1 36 7-44 52-89 (378)
447 PRK08293 3-hydroxybutyryl-CoA 21.4 1.1E+02 0.0023 29.2 3.7 33 7-44 3-35 (287)
448 PRK11914 diacylglycerol kinase 21.4 2.3E+02 0.0051 27.1 6.1 81 283-388 12-96 (306)
449 TIGR01425 SRP54_euk signal rec 21.4 3.7E+02 0.0079 27.4 7.5 42 7-48 100-141 (429)
450 PF02635 DrsE: DsrE/DsrF-like 21.4 2.3E+02 0.005 22.2 5.2 37 9-45 2-44 (122)
451 COG1553 DsrE Uncharacterized c 21.3 2.1E+02 0.0045 23.4 4.6 35 10-44 4-41 (126)
452 KOG0991 Replication factor C, 21.2 79 0.0017 29.1 2.4 32 1-32 42-73 (333)
453 PRK07236 hypothetical protein; 21.2 1.1E+02 0.0024 30.5 3.9 37 1-43 1-37 (386)
454 PRK13193 pyrrolidone-carboxyla 21.0 2.2E+02 0.0048 25.7 5.3 46 8-53 1-51 (209)
455 PF06564 YhjQ: YhjQ protein; 20.9 1.5E+02 0.0033 27.4 4.4 26 16-41 11-36 (243)
456 PF03698 UPF0180: Uncharacteri 20.9 86 0.0019 23.4 2.2 22 24-45 10-31 (80)
457 PRK03767 NAD(P)H:quinone oxido 20.8 1.7E+02 0.0038 26.0 4.7 37 8-44 2-40 (200)
458 PHA02519 plasmid partition pro 20.8 1.7E+02 0.0037 29.3 5.0 37 6-42 104-142 (387)
459 PF07015 VirC1: VirC1 protein; 20.7 2.3E+02 0.0049 26.1 5.3 33 16-48 11-43 (231)
460 TIGR03147 cyt_nit_nrfF cytochr 20.5 1.8E+02 0.0038 23.9 4.1 43 450-492 56-98 (126)
461 TIGR00745 apbA_panE 2-dehydrop 20.5 97 0.0021 29.3 3.2 19 26-44 5-23 (293)
462 cd06559 Endonuclease_V Endonuc 20.5 1.2E+02 0.0026 27.3 3.6 39 107-145 82-127 (208)
463 PRK13185 chlL protochlorophyll 20.5 1.7E+02 0.0037 27.4 4.8 33 9-41 4-36 (270)
464 PRK06079 enoyl-(acyl carrier p 20.5 1.6E+02 0.0035 27.1 4.7 39 1-42 1-40 (252)
465 TIGR00853 pts-lac PTS system, 20.5 2.6E+02 0.0056 21.5 5.0 39 6-44 2-40 (95)
466 PRK14974 cell division protein 20.4 3.8E+02 0.0083 26.2 7.3 40 7-46 140-179 (336)
467 PRK05858 hypothetical protein; 20.3 4.9E+02 0.011 27.3 8.7 24 364-387 71-100 (542)
468 PRK11780 isoprenoid biosynthes 20.3 2.1E+02 0.0045 26.0 5.1 37 8-44 2-42 (217)
469 COG2099 CobK Precorrin-6x redu 20.3 6.4E+02 0.014 23.5 8.1 105 25-145 118-228 (257)
470 PRK00094 gpsA NAD(P)H-dependen 20.2 1.1E+02 0.0025 29.4 3.7 32 8-44 2-33 (325)
471 PRK10637 cysG siroheme synthas 20.1 3.7E+02 0.0081 27.6 7.5 152 274-463 7-168 (457)
472 PF14626 RNase_Zc3h12a_2: Zc3h 20.1 1E+02 0.0022 24.8 2.5 26 21-46 9-34 (122)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-71 Score=560.06 Aligned_cols=484 Identities=58% Similarity=1.055 Sum_probs=369.3
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
.+++||+++|+|++||++|++.||+.|+++|+.|||++++.+..++..........+..|+|+.+|+|...+++|++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 45689999999999999999999999999999999999998876665544321111124999999988766788877665
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcc
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKV 164 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 164 (497)
....+.......+......+...+++++++...+++|||+|.++.|+..+|+++|||.+.|++++++...+++++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 44333323444555566677788888887644578999999999999999999999999999999998877655443322
Q ss_pred cCCCCCCCccccCCCCCCCcccccccCCCCCCC-chHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEE
Q 044823 165 HENVSSDSEYFKVPGFPHHIEFTKVQLPISPPT-DELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWC 243 (497)
Q Consensus 165 ~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 243 (497)
.........+..+|++|....++..+++.++.. ..+..+...+.+....+.++++|||.+||+.++++++..++++++.
T Consensus 166 ~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~ 245 (491)
T PLN02534 166 HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWC 245 (491)
T ss_pred cccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEE
Confidence 222222234556888876444666777764322 2233444444333455779999999999999999998777778999
Q ss_pred eCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCch
Q 044823 244 IGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKL 323 (497)
Q Consensus 244 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 323 (497)
|||+............+.......+++|.+||+.+++++||||||||.....++++.+++.+|+.++++|||+++.+...
T Consensus 246 VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~ 325 (491)
T PLN02534 246 VGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKH 325 (491)
T ss_pred ECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccc
Confidence 99997532111000000000011245799999999888999999999999999999999999999999999999853211
Q ss_pred hhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHH
Q 044823 324 EELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVL 403 (497)
Q Consensus 324 ~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~ 403 (497)
.....+++|++|.++.++.|+++.+|+||..||+|+++++|||||||||++||+++|||||++|+++||+.||++++|.+
T Consensus 326 ~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~ 405 (491)
T PLN02534 326 SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVL 405 (491)
T ss_pred cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhh
Confidence 11112226889988877889999999999999999999999999999999999999999999999999999999998899
Q ss_pred cceeEeccccccccccccccccccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 044823 404 RIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDD-GEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYH 482 (497)
Q Consensus 404 G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 482 (497)
|+|+.+.......++.+++.+..++.++|.++|+++|.+ +|+|+.+|+||++|++++++++.+||||.+++++||+++.
T Consensus 406 ~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 406 RIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVL 485 (491)
T ss_pred cceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 999998643222221111111248999999999999973 5778999999999999999999999999999999999997
Q ss_pred hccCcc
Q 044823 483 ATADLR 488 (497)
Q Consensus 483 ~~~~~~ 488 (497)
....||
T Consensus 486 ~~~~~~ 491 (491)
T PLN02534 486 KQQSLQ 491 (491)
T ss_pred HHhccC
Confidence 655543
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.2e-68 Score=535.56 Aligned_cols=455 Identities=34% Similarity=0.598 Sum_probs=353.5
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
.+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..+++.... ...+++++.+|+|.. .++|++.++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCCCCCCcC
Confidence 357999999999999999999999999999999999999988876654421 123588888888765 378888765
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcc
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKV 164 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 164 (497)
....+. +....+......+...+.+++++.+.+++|||+|.+..|+..+|+++|||++.|++++++.+++++++.....
T Consensus 82 ~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 82 VKDLPP-SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred hhhcch-hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 543322 3333455555667777777777644578999999999999999999999999999999999999888764322
Q ss_pred cCC-CCCCCcc---ccCCCCCCCcccccccCCCCCCC----chHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhh
Q 044823 165 HEN-VSSDSEY---FKVPGFPHHIEFTKVQLPISPPT----DELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNA 236 (497)
Q Consensus 165 ~~~-~~~~~~~---~~~P~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 236 (497)
... ......+ ..+|+++. ++.++++.+++. ......+.+..+....++++++|||.+||+.++++++..
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred ccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 111 0111112 23677765 677777764432 122333333333456778899999999999999999876
Q ss_pred cC-CceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEE
Q 044823 237 KQ-GKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIW 315 (497)
Q Consensus 237 ~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 315 (497)
++ ++++.|||+.+..........+....+..++++.+||+.+++++||||||||+...+.+++.+++.+|+..+++|||
T Consensus 238 ~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 238 LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 65 68999999975321110000011111113568999999998889999999999999999999999999999999999
Q ss_pred EEeCCCchh-hhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchh
Q 044823 316 VSRVGNKLE-ELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFC 394 (497)
Q Consensus 316 ~~~~~~~~~-~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~ 394 (497)
+++...... .... +|++|.++....|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 318 ~~~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 318 CVKEPVNEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EECCCcccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 998542211 1112 7889988888889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 044823 395 NEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNI 474 (497)
Q Consensus 395 na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 474 (497)
||+++++++|+|+.+.... ++..+.+++.++|+++|. +++.||+||+++++.+++++++||+|++++
T Consensus 396 na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~---~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l 462 (477)
T PLN02863 396 NASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVS---ENQVERERAKELRRAALDAIKERGSSVKDL 462 (477)
T ss_pred hHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 9999766799999995320 124689999999999994 235999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 044823 475 KFFHPRYHA 483 (497)
Q Consensus 475 ~~~~~~~~~ 483 (497)
++||+++..
T Consensus 463 ~~~v~~i~~ 471 (477)
T PLN02863 463 DGFVKHVVE 471 (477)
T ss_pred HHHHHHHHH
Confidence 999999853
No 3
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9.5e-68 Score=537.84 Aligned_cols=469 Identities=44% Similarity=0.804 Sum_probs=352.9
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhh--cCCCeEEEEecCCccccCCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQ--CRLQIRLIEIQFPWQEAGLPEGCE 83 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~i~~~~~~~~~~~~~~ 83 (497)
+++||+++|+|++||++|++.||+.|++||++|||++++.+..++++.+..... ....+.+..+++|..++++|.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 467999999999999999999999999999999999999887766655433211 111346666776655456776654
Q ss_pred CCCCCC------chhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHH
Q 044823 84 NFDMLP------SIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLD 157 (497)
Q Consensus 84 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~ 157 (497)
.....+ .......+......+...+++++++ .++|+||+|.++.|+..+|+++|||.+.|++++++...+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 432110 1133334445556777888888887 68999999999999999999999999999999998887766
Q ss_pred HhhhhcccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhc
Q 044823 158 ILRVSKVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAK 237 (497)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 237 (497)
....+...........+..+|++|..+.++..+++..-....+..++....+...+++++++|++.++++++.+.++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~ 241 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV 241 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc
Confidence 55432211111111123347888753334445555432222244555555556678889999999999999888887666
Q ss_pred CCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEE
Q 044823 238 QGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVS 317 (497)
Q Consensus 238 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 317 (497)
..++++|||+............+....+..+.++.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||++
T Consensus 242 ~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~ 321 (482)
T PLN03007 242 AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVV 321 (482)
T ss_pred CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 66899999986532211000000111122357899999999888999999999998889999999999999999999999
Q ss_pred eCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHH
Q 044823 318 RVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEK 397 (497)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~ 397 (497)
+..........+ +|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 322 ~~~~~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~ 400 (482)
T PLN03007 322 RKNENQGEKEEW-LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEK 400 (482)
T ss_pred ecCCcccchhhc-CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHH
Confidence 864221111122 8889999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 044823 398 LIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFF 477 (497)
Q Consensus 398 ~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~ 477 (497)
++++.+|+|+.+....... ...+.++.++|+++|+++|.| ++|+.||+||+++++.+++++++||+|++++++|
T Consensus 401 ~~~~~~~~G~~~~~~~~~~-----~~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~ 474 (482)
T PLN03007 401 LVTQVLRTGVSVGAKKLVK-----VKGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKF 474 (482)
T ss_pred HHHHhhcceeEeccccccc-----cccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9866677777764210000 001258999999999999986 5788999999999999999999999999999999
Q ss_pred HHHHhh
Q 044823 478 HPRYHA 483 (497)
Q Consensus 478 ~~~~~~ 483 (497)
|+++..
T Consensus 475 v~~~~~ 480 (482)
T PLN03007 475 MEELNS 480 (482)
T ss_pred HHHHHh
Confidence 998864
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2e-66 Score=518.46 Aligned_cols=434 Identities=24% Similarity=0.358 Sum_probs=336.3
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
.++||+++|+|++||++|++.||+.|++|||+|||++++.+..++.+. ......+++..++++.. +++|.+.+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~----~a~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH----NLFPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc----cCCCCceEEEEeCCCCc-cCCCCCcccc
Confidence 578999999999999999999999999999999999998665554332 11122577887776532 4677665432
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhccc
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVH 165 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
.... ......+......+.+.+++++++ .++||||+| ++.|+..+|..+|||++.|++++++... +++...
T Consensus 78 ~~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---- 148 (442)
T PLN02208 78 SDIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---- 148 (442)
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----
Confidence 2111 122223444556778888998887 789999999 6789999999999999999999998654 332211
Q ss_pred CCCCCCCccccCCCCCCC-cccccccCCCCCCCch-HHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEE
Q 044823 166 ENVSSDSEYFKVPGFPHH-IEFTKVQLPISPPTDE-LKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWC 243 (497)
Q Consensus 166 ~~~~~~~~~~~~P~~~~~-~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 243 (497)
... ...+|++|.. +.++..+++.+..... +..+...+.+....++++++|||.+||+.+++++++.++++++.
T Consensus 149 ~~~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 149 GKL-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred ccc-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 111 1225777652 2245556664322112 33334344345567899999999999999999998887789999
Q ss_pred eCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCch
Q 044823 244 IGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKL 323 (497)
Q Consensus 244 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 323 (497)
|||+....... ...++++.+|||++++++||||||||...++.+++.+++.+++..+.+++|+.+.+...
T Consensus 224 vGpl~~~~~~~----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 224 TGPMFPEPDTS----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred EeecccCcCCC----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 99997542100 11367899999999888999999999999899999999999988899999998754211
Q ss_pred hhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHH
Q 044823 324 EELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVL 403 (497)
Q Consensus 324 ~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~ 403 (497)
.....+ +|++|.++++..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+
T Consensus 294 ~~~~~~-lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~ 372 (442)
T PLN02208 294 STVQEG-LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEF 372 (442)
T ss_pred cchhhh-CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHh
Confidence 011123 8999999998999999999999999999999999999999999999999999999999999999999986569
Q ss_pred cceeEeccccccccccccccccccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 044823 404 RIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDG-EERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYH 482 (497)
Q Consensus 404 G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 482 (497)
|+|+.++..+ ++.++.++|+++|+++|+|+ |+|+.+|++|+++++.+. ++|+|++++++||+++.
T Consensus 373 g~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~ 438 (442)
T PLN02208 373 EVSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQ 438 (442)
T ss_pred ceeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHH
Confidence 9999997540 12489999999999999876 579999999999999974 37899999999999985
Q ss_pred h
Q 044823 483 A 483 (497)
Q Consensus 483 ~ 483 (497)
.
T Consensus 439 ~ 439 (442)
T PLN02208 439 E 439 (442)
T ss_pred H
Confidence 3
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.8e-66 Score=517.74 Aligned_cols=438 Identities=29% Similarity=0.477 Sum_probs=333.5
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCC
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPE 80 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 80 (497)
|+...+++||+++|+|++||++|++.||+.|++||+.|||++++.+... .. ....++++..+| +++|+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip-----~glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIP-----ESLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCC-----CCCCc
Confidence 7877788999999999999999999999999999999999999976421 11 011258888876 36665
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhc----CCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHH
Q 044823 81 GCENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQ----TPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCL 156 (497)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~ 156 (497)
+.... ......+.. ....+...+++++++. ..+++|||+|.+..|+..+|+++|||.+.|++++++.++++
T Consensus 69 ~~~~~--~~~~~~~~~---~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~ 143 (451)
T PLN02410 69 SDFKN--LGPIEFLHK---LNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCR 143 (451)
T ss_pred ccccc--cCHHHHHHH---HHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHH
Confidence 32111 111122222 2223444455554432 24679999999999999999999999999999999998877
Q ss_pred HHhhhhcccC---CCCC--CCccccCCCCCCCcccccccCCCCCCC--chHHHHHHHHHHhcccccEEEecchhhhhHHH
Q 044823 157 DILRVSKVHE---NVSS--DSEYFKVPGFPHHIEFTKVQLPISPPT--DELKEFNEKILAADKKTYGVIINTFEELESAS 229 (497)
Q Consensus 157 ~~~~~~~~~~---~~~~--~~~~~~~P~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 229 (497)
+++....... .... ......+|++++ ++..+++.+... ..+...+.... ..+.++++++|||.+||+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~ 219 (451)
T PLN02410 144 SVFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSS 219 (451)
T ss_pred HHHHHHHhccCCCCccccccCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHH
Confidence 7653321110 1011 112335788776 555666643221 12222232222 34678899999999999999
Q ss_pred HHHHHhhcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhC
Q 044823 230 VKEYKNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS 309 (497)
Q Consensus 230 ~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 309 (497)
+++++...+++++.|||+....... ...+..+.++.+||+++++++||||||||....+.+++.+++.+|+.+
T Consensus 220 ~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s 292 (451)
T PLN02410 220 LSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSS 292 (451)
T ss_pred HHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhc
Confidence 9999876777899999997532110 011122456899999998889999999999999999999999999999
Q ss_pred CCCeEEEEeCCCch-hhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCC
Q 044823 310 KKPFIWVSRVGNKL-EELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 310 ~~~~i~~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 388 (497)
+++|||+++.+... ...... +|++|.+++. +|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 293 ~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~ 370 (451)
T PLN02410 293 NQQFLWVIRPGSVRGSEWIES-LPKEFSKIIS-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPF 370 (451)
T ss_pred CCCeEEEEccCcccccchhhc-CChhHHHhcc-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccc
Confidence 99999999843210 011111 7889988875 55677799999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 044823 389 FTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGG 468 (497)
Q Consensus 389 ~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g 468 (497)
++||+.||+++++.+|+|+.+. . .++.++|+++|+++|.|++ ++.||++|++|++.+++++++||
T Consensus 371 ~~DQ~~na~~~~~~~~~G~~~~-~-------------~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~gG 435 (451)
T PLN02410 371 SSDQKVNARYLECVWKIGIQVE-G-------------DLDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVISGG 435 (451)
T ss_pred cccCHHHHHHHHHHhCeeEEeC-C-------------cccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999975669999997 3 4899999999999998754 88999999999999999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 044823 469 SSYNNIKFFHPRYHA 483 (497)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (497)
+|.+++++||+++..
T Consensus 436 sS~~~l~~fv~~~~~ 450 (451)
T PLN02410 436 SSHNSLEEFVHFMRT 450 (451)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998753
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.3e-66 Score=518.36 Aligned_cols=438 Identities=25% Similarity=0.408 Sum_probs=340.5
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLA-QHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
.++||+++|+|++||++|++.||+.|+ ++|+.|||++++.+.+++..... ...+++++.+|++... ++|....
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~-glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDIS-GLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCcccc-CCCCCCc-
Confidence 467999999999999999999999998 78999999999987665533221 1125889988865432 4542110
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhc-
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSK- 163 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~- 163 (497)
.....+......+.+.+++++++...+++|||+|.++.|+..+|+++|||++.|++++++.++.+.+.+...
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 78 -------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred -------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 111223333445667777777764357899999999999999999999999999999999887766554321
Q ss_pred ccCC-CCCCCccccCCCCCCCcccccccCCCCCCCc--hHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhh--c-
Q 044823 164 VHEN-VSSDSEYFKVPGFPHHIEFTKVQLPISPPTD--ELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNA--K- 237 (497)
Q Consensus 164 ~~~~-~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~- 237 (497)
.... ...+..+..+|+++. ++..+++..+... .....+.+..+....++++++|||.+||+.++++++.. .
T Consensus 151 ~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~ 227 (481)
T PLN02992 151 DIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLG 227 (481)
T ss_pred ccccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccc
Confidence 1110 001112345788876 5666776432221 22333344445567889999999999999999988642 1
Q ss_pred ---CCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeE
Q 044823 238 ---QGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFI 314 (497)
Q Consensus 238 ---~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 314 (497)
.++++.|||+...... ...+++|.+||+++++++||||||||...++.+++.+++.+|+.++++||
T Consensus 228 ~~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~fl 296 (481)
T PLN02992 228 RVARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFV 296 (481)
T ss_pred cccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 2579999999753211 01256799999999888999999999999999999999999999999999
Q ss_pred EEEeCCCc---------------hhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHh
Q 044823 315 WVSRVGNK---------------LEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISA 379 (497)
Q Consensus 315 ~~~~~~~~---------------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~ 379 (497)
|+++.+.. .....++ +|++|.++++..|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 297 W~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~ 375 (481)
T PLN02992 297 WVVRPPVDGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVG 375 (481)
T ss_pred EEEeCCcccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHc
Confidence 99974211 0011223 8999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 044823 380 GVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 380 GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 459 (497)
|||||++|+++||+.||+++++++|+|+.++.. ++.++.++|+++|+++|.| ++|+.||++|+++++.
T Consensus 376 GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-----------~~~~~~~~l~~av~~vm~~-~~g~~~r~~a~~~~~~ 443 (481)
T PLN02992 376 GVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-----------KEVISRSKIEALVRKVMVE-EEGEEMRRKVKKLRDT 443 (481)
T ss_pred CCCEEecCccchhHHHHHHHHHHhCeeEEecCC-----------CCcccHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 999999999999999999995599999999753 0158999999999999986 4788999999999999
Q ss_pred HHHHHh--hCCChHHHHHHHHHHHhh
Q 044823 460 AKRALE--EGGSSYNNIKFFHPRYHA 483 (497)
Q Consensus 460 ~~~~~~--~~g~~~~~~~~~~~~~~~ 483 (497)
+++++. +||||.+++++||+++.-
T Consensus 444 a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 444 AEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 999994 699999999999998854
No 7
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1e-65 Score=516.28 Aligned_cols=455 Identities=27% Similarity=0.429 Sum_probs=340.1
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH--HH-HHh-hhc-CCCeEEEEecCCccc
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKT--VL-ARA-LQC-RLQIRLIEIQFPWQE 75 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~--~~-~~~-~~~-~~~i~~~~i~~~~~~ 75 (497)
|+++..+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..++.. .+ ... ... ...++|..++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 8999999999999999999999999999999999999999999977765542 11 100 000 1124444433
Q ss_pred cCCCCCCCCCCCCCchhHHHHHHHHHH-hchHHHHHHHhhc---CCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHH
Q 044823 76 AGLPEGCENFDMLPSIDLAYNFLTSLQ-KLQLPFENLFREQ---TPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCF 151 (497)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~---~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~ 151 (497)
+++|.+.+.. . +. ..+...+. .+...++++++.. ..+++|||+|.+..|+..+|+++|||.+.|++++++
T Consensus 76 dglp~~~~~~---~--~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 76 DGWAEDDPRR---Q--DL-DLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCCCCcccc---c--CH-HHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 4676554321 1 11 12222222 4456666666542 133499999999999999999999999999999999
Q ss_pred HHHHHHHhhhhc-ccCCCCCCCccccCCCCCCCcccccccCCCCCCC----chHHHHHHHHHHhcccccEEEecchhhhh
Q 044823 152 CLLCLDILRVSK-VHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPT----DELKEFNEKILAADKKTYGVIINTFEELE 226 (497)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~s~~~l~ 226 (497)
.+.+++++.... .......+..+..+|++|. ++..+++.++.. ..+...+.+..+....++++++|||.+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE 226 (480)
T PLN02555 150 CFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELE 226 (480)
T ss_pred HHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHh
Confidence 998877763211 1111111123355889886 677888875532 12223333344456778899999999999
Q ss_pred HHHHHHHHhhcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHH
Q 044823 227 SASVKEYKNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGL 306 (497)
Q Consensus 227 ~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al 306 (497)
+.+++.++... + ++.|||+......... ......+..+++|.+||+++++++||||||||+...+.+++.+++.+|
T Consensus 227 ~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l 302 (480)
T PLN02555 227 KEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGV 302 (480)
T ss_pred HHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHH
Confidence 99998886643 3 9999999753211100 001111224578999999998889999999999999999999999999
Q ss_pred HhCCCCeEEEEeCCCchh-hhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEec
Q 044823 307 EASKKPFIWVSRVGNKLE-ELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLT 385 (497)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~-~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~ 385 (497)
+..+++|||+++...... ....+ +|+++.++. .+|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 303 ~~~~~~flW~~~~~~~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~ 380 (480)
T PLN02555 303 LNSGVSFLWVMRPPHKDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC 380 (480)
T ss_pred HhcCCeEEEEEecCcccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEe
Confidence 999999999987431100 00112 787887665 467788899999999999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q 044823 386 WPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALE 465 (497)
Q Consensus 386 ~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~ 465 (497)
+|+++||+.||+++++.+|+|+.+.... + ..+.++.++|.++|+++|++ ++|+.+|+||++|+++++++++
T Consensus 381 ~P~~~DQ~~Na~~~~~~~gvGv~l~~~~------~--~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~A~~ 451 (480)
T PLN02555 381 FPQWGDQVTDAVYLVDVFKTGVRLCRGE------A--ENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEAAVA 451 (480)
T ss_pred CCCccccHHHHHHHHHHhCceEEccCCc------c--ccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999976679999995320 0 01258999999999999976 6789999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhhc
Q 044823 466 EGGSSYNNIKFFHPRYHAT 484 (497)
Q Consensus 466 ~~g~~~~~~~~~~~~~~~~ 484 (497)
+||||++++++||+++...
T Consensus 452 egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 452 EGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999754
No 8
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.2e-65 Score=511.26 Aligned_cols=440 Identities=28% Similarity=0.452 Sum_probs=340.9
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhh--HHHHHHhhhcCCCeEEEEecCCccccCCC-CC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQH-GATATIVTTPVNAARF--KTVLARALQCRLQIRLIEIQFPWQEAGLP-EG 81 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~i~~~~~~~~~~-~~ 81 (497)
.+.||+++|+|++||++|++.||+.|+++ |..|||++++.+.... ...+.... ...+|+++.+|++.. ++++ .+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC
Confidence 46799999999999999999999999987 9999999888766443 11121111 112589999886532 1331 11
Q ss_pred CCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCC-eEEEechhHHHHHHHHHhh
Q 044823 82 CENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVP-RIIFHGFSCFCLLCLDILR 160 (497)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP-~i~~~~~~~~~~~~~~~~~ 160 (497)
. +....+......+...+++++++...+++|||+|.+.+|+..+|+++||| .+.+++++++...++++++
T Consensus 80 ------~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~ 150 (470)
T PLN03015 80 ------A---TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLP 150 (470)
T ss_pred ------c---cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhh
Confidence 0 22234445555677888888887434789999999999999999999999 5888888888887776654
Q ss_pred hhc-ccCC-CCCCCccccCCCCCCCcccccccCCCCCCCc--h-HHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHh
Q 044823 161 VSK-VHEN-VSSDSEYFKVPGFPHHIEFTKVQLPISPPTD--E-LKEFNEKILAADKKTYGVIINTFEELESASVKEYKN 235 (497)
Q Consensus 161 ~~~-~~~~-~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 235 (497)
... .... ......+..+|++|. ++..+++..+.+. . +..++ ...+....++++++|||.+||+.+++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~ 226 (470)
T PLN03015 151 VLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALRE 226 (470)
T ss_pred hhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 321 1111 001123456889886 6777887544321 1 33333 333446789999999999999999998876
Q ss_pred hc------CCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhC
Q 044823 236 AK------QGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS 309 (497)
Q Consensus 236 ~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 309 (497)
.+ .++++.|||+...... ...++++.+|||++++++||||||||....+.+++.+++.+|+.+
T Consensus 227 ~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 227 DMELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred hcccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 42 2569999999742110 012457999999998889999999999999999999999999999
Q ss_pred CCCeEEEEeCCCc--------hhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCC
Q 044823 310 KKPFIWVSRVGNK--------LEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGV 381 (497)
Q Consensus 310 ~~~~i~~~~~~~~--------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~Gv 381 (497)
+++|||+++.+.. .+...++ +|++|.++++..++++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred CCcEEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 9999999974311 0112234 899999999888889999999999999999999999999999999999999
Q ss_pred cEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHH
Q 044823 382 QMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDD-GEERDGRRRRAKEFGELA 460 (497)
Q Consensus 382 P~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~~~~~~ 460 (497)
|||++|+++||+.||+++++.+|+|+.+.... .++.++.++|+++|+++|.+ +++|+.+|+||++|++++
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a 445 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSS 445 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999977999999996210 01258999999999999963 367999999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHH
Q 044823 461 KRALEEGGSSYNNIKFFHPRY 481 (497)
Q Consensus 461 ~~~~~~~g~~~~~~~~~~~~~ 481 (497)
++++++||||++++++|+.++
T Consensus 446 ~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 446 ERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHhcCCCcHHHHHHHHHHhc
Confidence 999999999999999999876
No 9
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-65 Score=509.30 Aligned_cols=438 Identities=25% Similarity=0.391 Sum_probs=339.8
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
+.++||+++|+|++||++|++.||+.|+++|+.|||++++.+...+... .. ...++.+..+++|. .+++|++.+.
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~--~~~~~~v~~~~~p~-~~glp~g~e~ 77 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NL--FPHNIVFRSVTVPH-VDGLPVGTET 77 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--cc--CCCCceEEEEECCC-cCCCCCcccc
Confidence 3579999999999999999999999999999999999999876655431 10 11133444444443 2478776554
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcc
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKV 164 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 164 (497)
....+. .....+...+..+.+.+++++++ .++||||+| +..|+..+|+++|||.+.|++++++.++++.. .
T Consensus 78 ~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~---- 148 (453)
T PLN02764 78 VSEIPV-TSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-P---- 148 (453)
T ss_pred cccCCh-hHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----
Confidence 433332 33445555666778889999988 678999999 48899999999999999999999988887642 1
Q ss_pred cCCCCCCCccccCCCCCCC-cccccccCCCCCC--C----chHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhc
Q 044823 165 HENVSSDSEYFKVPGFPHH-IEFTKVQLPISPP--T----DELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAK 237 (497)
Q Consensus 165 ~~~~~~~~~~~~~P~~~~~-~~~~~~~l~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 237 (497)
...+ ...+|++|.. ..++.++++.+.. . ..+..++.++.+....++++++|||.+||+.++++++...
T Consensus 149 ~~~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~ 223 (453)
T PLN02764 149 GGEL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC 223 (453)
T ss_pred cccC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc
Confidence 1111 1224677631 1134455544211 1 1233455555455677889999999999999999997644
Q ss_pred CCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEE
Q 044823 238 QGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVS 317 (497)
Q Consensus 238 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 317 (497)
+++++.|||+....... ...+.++.+|||++++++||||||||....+.+++.+++.+|+..+.+|+|++
T Consensus 224 ~~~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 224 RKKVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred CCcEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 56899999996532100 01246899999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHH
Q 044823 318 RVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEK 397 (497)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~ 397 (497)
+.+...+....+ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+
T Consensus 294 r~~~~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 372 (453)
T PLN02764 294 KPPRGSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR 372 (453)
T ss_pred eCCCCCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH
Confidence 853211111223 8999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 044823 398 LIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDG-EERDGRRRRAKEFGELAKRALEEGGSSYNNIKF 476 (497)
Q Consensus 398 ~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~ 476 (497)
++++.+|+|+.+..++ .+.++.++|+++|+++|+++ ++++.+|++++++++.++ +||||.+++++
T Consensus 373 ~l~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 373 LLSDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred HHHHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 9965689999875320 01489999999999999876 678999999999999975 48999999999
Q ss_pred HHHHHhhccC
Q 044823 477 FHPRYHATAD 486 (497)
Q Consensus 477 ~~~~~~~~~~ 486 (497)
||+++....+
T Consensus 439 lv~~~~~~~~ 448 (453)
T PLN02764 439 FIESLQDLVS 448 (453)
T ss_pred HHHHHHHhcc
Confidence 9999876543
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.3e-65 Score=517.46 Aligned_cols=449 Identities=29% Similarity=0.445 Sum_probs=343.1
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCC----CeEEEEeCCcchh----hhHHHHHHhhhcCCCeEEEEecCCcccc
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHG----ATATIVTTPVNAA----RFKTVLARALQCRLQIRLIEIQFPWQEA 76 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 76 (497)
|++.||+++|+|++||++|++.||+.|+.|| +.|||++++.+.+ ++...+.+......+|+++.+|.+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---
Confidence 3567999999999999999999999999997 7899999876532 3443332211112258898887431
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHH
Q 044823 77 GLPEGCENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCL 156 (497)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~ 156 (497)
.|.+.+. . . ..+......+.+.+++++++...+++|||+|.+..|+..+|+++|||.+.|++++++.++++
T Consensus 78 -~p~~~e~-----~-~--~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~ 148 (480)
T PLN00164 78 -PPTDAAG-----V-E--EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALM 148 (480)
T ss_pred -CCCcccc-----H-H--HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 2222111 1 1 12222344567778888776334679999999999999999999999999999999999888
Q ss_pred HHhhhhccc-C-CCCCCCccccCCCCCCCcccccccCCCCCCCc--hHHHHHHHHHHhcccccEEEecchhhhhHHHHHH
Q 044823 157 DILRVSKVH-E-NVSSDSEYFKVPGFPHHIEFTKVQLPISPPTD--ELKEFNEKILAADKKTYGVIINTFEELESASVKE 232 (497)
Q Consensus 157 ~~~~~~~~~-~-~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 232 (497)
++++..... . .......+..+|+++. ++..+++.++... ....++....+...+++++++|||.+||+.++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 149 LRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 776442111 0 0111012334788876 6777887654322 2223333334556778899999999999999998
Q ss_pred HHhhc------CCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHH
Q 044823 233 YKNAK------QGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGL 306 (497)
Q Consensus 233 ~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al 306 (497)
++... .++++.|||+....... ..+..+.++.+||+++++++||||||||+...+.+++.+++.+|
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 87642 15799999997432110 00123578999999998889999999999889999999999999
Q ss_pred HhCCCCeEEEEeCCCc-------hhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHh
Q 044823 307 EASKKPFIWVSRVGNK-------LEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISA 379 (497)
Q Consensus 307 ~~~~~~~i~~~~~~~~-------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~ 379 (497)
+.++++|||+++.... ......+ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~ 376 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWH 376 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHc
Confidence 9999999999985321 0112233 7889999988899999999999999999999999999999999999999
Q ss_pred CCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHH
Q 044823 380 GVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGE-ERDGRRRRAKEFGE 458 (497)
Q Consensus 380 GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~~a~~~~~ 458 (497)
|||||++|+++||+.||+++++++|+|+.+...+ ++++.++.++|.++|+++|.|++ +++.+|++|++|++
T Consensus 377 GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~--------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 377 GVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR--------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKA 448 (480)
T ss_pred CCCEEeCCccccchhHHHHHHHHhCeEEEecccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999998766799999986430 00124799999999999998876 59999999999999
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhhcc
Q 044823 459 LAKRALEEGGSSYNNIKFFHPRYHATA 485 (497)
Q Consensus 459 ~~~~~~~~~g~~~~~~~~~~~~~~~~~ 485 (497)
++++++++||||.+++++||+++...+
T Consensus 449 ~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 449 ACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986543
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-65 Score=509.61 Aligned_cols=431 Identities=27% Similarity=0.454 Sum_probs=330.3
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCC-C
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGC-E 83 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~-~ 83 (497)
.++.||+++|+|++||++|++.||+.|+++|+.|||++++.+...+... ...+|+++.++ +++|++. +
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccc
Confidence 4678999999999999999999999999999999999999765544221 12358998886 3677632 2
Q ss_pred CCCCCCchhHHHHHHHHH-HhchHHHHHHHhhc--CCCC-eEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHh
Q 044823 84 NFDMLPSIDLAYNFLTSL-QKLQLPFENLFREQ--TPQP-CCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDIL 159 (497)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~--~~~~-D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~ 159 (497)
... +.. .+.... ..+.+.+++++++. +.+| +|||+|.+..|+..+|+++|||.+.|++++++...++++.
T Consensus 72 ~~~-----~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~ 145 (449)
T PLN02173 72 SAG-----SVP-EYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS 145 (449)
T ss_pred ccc-----CHH-HHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH
Confidence 211 111 222222 24566777776652 1245 9999999999999999999999999999998887665432
Q ss_pred hhhcccCCCCCCCccccCCCCCCCcccccccCCCCCCC----chHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHh
Q 044823 160 RVSKVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPT----DELKEFNEKILAADKKTYGVIINTFEELESASVKEYKN 235 (497)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 235 (497)
.. . . ......+|++|. ++..+++.++.. ..+...+.+..+....++++++|||.+||+.++++++.
T Consensus 146 ~~-~--~----~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 215 (449)
T PLN02173 146 YI-N--N----GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK 215 (449)
T ss_pred Hh-c--c----CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh
Confidence 11 0 0 112344788876 677788775532 11233333344556788899999999999999988865
Q ss_pred hcCCceEEeCcCcCCCc-cchhhhhcCC--CCC--CChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCC
Q 044823 236 AKQGKVWCIGPVSLCNK-ESLDKVERGN--KAA--IDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASK 310 (497)
Q Consensus 236 ~~~~~~~~vGp~~~~~~-~~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~ 310 (497)
. ++++.|||+.+... .......... ..+ ..+++|.+||+.+++++||||||||+...+.+++.+++.+| .+
T Consensus 216 ~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~ 291 (449)
T PLN02173 216 V--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SN 291 (449)
T ss_pred c--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cC
Confidence 3 36999999964211 0000000000 011 12456999999999889999999999999999999999999 77
Q ss_pred CCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcc
Q 044823 311 KPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFT 390 (497)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~ 390 (497)
.+|+|+++.+... + +|+++.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 292 ~~flWvvr~~~~~-----~-lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~ 365 (449)
T PLN02173 292 FSYLWVVRASEES-----K-LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWT 365 (449)
T ss_pred CCEEEEEeccchh-----c-ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchh
Confidence 8899999853221 1 788888888778999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCCh
Q 044823 391 DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSS 470 (497)
Q Consensus 391 DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~ 470 (497)
||+.||+++++.+|+|+.+..++ .++.++.++|+++|+++|+| ++|+.+|+||+++++++++++++||||
T Consensus 366 DQ~~Na~~v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~~-~~~~~~r~~a~~~~~~a~~Av~~gGSS 435 (449)
T PLN02173 366 DQPMNAKYIQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVMEG-EKSKEMKENAGKWRDLAVKSLSEGGST 435 (449)
T ss_pred cchHHHHHHHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999976679999997541 01147999999999999986 567899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 044823 471 YNNIKFFHPRYH 482 (497)
Q Consensus 471 ~~~~~~~~~~~~ 482 (497)
.+++++||+++.
T Consensus 436 ~~~l~~~v~~~~ 447 (449)
T PLN02173 436 DININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 12
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.3e-65 Score=510.83 Aligned_cols=454 Identities=27% Similarity=0.438 Sum_probs=342.6
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
.++.||+++|+|++||++|++.||+.|++||+.|||++++.+..++...... ...+|+++.+|+|.. +++|.+.+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~~~~~ 79 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPSSAES 79 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCCCccc
Confidence 4568999999999999999999999999999999999999877655432111 123599999998765 478766554
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcc
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKV 164 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 164 (497)
...... .....+......+.+.+++++++ .+++|||+|.+..|+..+|+++|||.+.|+++++..++.++++.....
T Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 80 STDVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred ccccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 322211 11123334555678888888887 689999999999999999999999999999999998887664432211
Q ss_pred cCCCCCCCccc-cCCCCCCC---cccccccCCCCCCC---c-h-HHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHh
Q 044823 165 HENVSSDSEYF-KVPGFPHH---IEFTKVQLPISPPT---D-E-LKEFNEKILAADKKTYGVIINTFEELESASVKEYKN 235 (497)
Q Consensus 165 ~~~~~~~~~~~-~~P~~~~~---~~~~~~~l~~~~~~---~-~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 235 (497)
........+.. .+|++.+. +.++.++++.++.. . . +..+. +.......++++++|||.+||+.++++++.
T Consensus 157 ~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 157 GGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred cccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 11111211221 24544221 12445566654421 1 1 22333 333445678899999999999999999977
Q ss_pred hcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEE
Q 044823 236 AKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIW 315 (497)
Q Consensus 236 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 315 (497)
.++++++.|||+......... .........+++.+|||++++++||||||||+..++.+++.+++.+|+.++++|||
T Consensus 236 ~~~~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred hhCCCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 666789999999653111000 00000001267999999998889999999999999999999999999999999999
Q ss_pred EEeCCCch-hhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchh
Q 044823 316 VSRVGNKL-EELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFC 394 (497)
Q Consensus 316 ~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~ 394 (497)
+++..... .+..++ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 313 v~r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (472)
T PLN02670 313 VLRNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGL 391 (472)
T ss_pred EEcCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHH
Confidence 99853211 111123 8999999988888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 044823 395 NEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNI 474 (497)
Q Consensus 395 na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~ 474 (497)
||++++ ++|+|+.++..+ .++.++.++|+++|+++|.| ++|+.||+||+++++.+++ .+.....+
T Consensus 392 Na~~v~-~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~----~~~~~~~~ 456 (472)
T PLN02670 392 NTRLLH-GKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGD----MDRNNRYV 456 (472)
T ss_pred HHHHHH-HcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhC----cchhHHHH
Confidence 999995 999999997531 01258999999999999986 5688999999999999885 45667888
Q ss_pred HHHHHHHhhcc
Q 044823 475 KFFHPRYHATA 485 (497)
Q Consensus 475 ~~~~~~~~~~~ 485 (497)
++|+..+....
T Consensus 457 ~~~~~~l~~~~ 467 (472)
T PLN02670 457 DELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHhc
Confidence 99999887665
No 13
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.4e-65 Score=508.77 Aligned_cols=450 Identities=25% Similarity=0.445 Sum_probs=333.0
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCcch-hhhHHHHHHhhhcCCCeEEEEecCCccccCCCCC
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHG--ATATIVTTPVNA-ARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEG 81 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 81 (497)
|++.||+++|+|++||++|++.||+.|+++| ..|||++++.+. ..+...+.+......+++|+.+|.... .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 3467999999999999999999999999998 999999998765 333333322111122589999873211 1110
Q ss_pred CCCCCCCCchhHHHHHHHHHHh----chHHHHHHHhhcC---CCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHH
Q 044823 82 CENFDMLPSIDLAYNFLTSLQK----LQLPFENLFREQT---PQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLL 154 (497)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~---~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~ 154 (497)
... . +....+...+.. +...+.+++++.. .+++|||+|.+..|+..+|+++|||.+.|++++++..+
T Consensus 78 -~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 -GGT--Q---SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred -ccc--c---CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 011 1 111222222222 3445666665421 23489999999999999999999999999999999888
Q ss_pred HHHHhhhhc-ccCCC--CCCCccccCCCC-CCCcccccccCCCCCCC-chHHHHHHHHHHhcccccEEEecchhhhhHHH
Q 044823 155 CLDILRVSK-VHENV--SSDSEYFKVPGF-PHHIEFTKVQLPISPPT-DELKEFNEKILAADKKTYGVIINTFEELESAS 229 (497)
Q Consensus 155 ~~~~~~~~~-~~~~~--~~~~~~~~~P~~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 229 (497)
++.+..... ..... +..+.+..+|++ +. ++..+++.++.. ..+..+. +..+..++++++++||+.++|+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~~LE~~~ 227 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVEDGYDAYV-KLAILFTKANGILVNSSFDIEPYS 227 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCCccHHHHH-HHHHhcccCCEEEEEchHHHhHHH
Confidence 777654321 11111 111133568888 44 677888875532 2233333 344456788999999999999999
Q ss_pred HHHHHh-hcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHh
Q 044823 230 VKEYKN-AKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA 308 (497)
Q Consensus 230 ~~~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~ 308 (497)
++.++. +..++++.|||+......... ......++++.+||+++++++||||||||....+.+++++++.+|+.
T Consensus 228 ~~~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~ 302 (468)
T PLN02207 228 VNHFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLEL 302 (468)
T ss_pred HHHHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHH
Confidence 988864 344789999999754321100 00001246799999999888999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCC
Q 044823 309 SKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 388 (497)
++++|||+++.... ...++ +|++|.++.. +|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 303 ~~~~flW~~r~~~~--~~~~~-lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~ 378 (468)
T PLN02207 303 CQYRFLWSLRTEEV--TNDDL-LPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPM 378 (468)
T ss_pred CCCcEEEEEeCCCc--ccccc-CCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCc
Confidence 99999999985321 01223 7889987764 55677799999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 044823 389 FTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGG 468 (497)
Q Consensus 389 ~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g 468 (497)
++||+.||+++++.+|+|+.+..+.. .+.++.++.++|+++|+++|+ ++++.||+||+++++++++|+++||
T Consensus 379 ~~DQ~~Na~~~~~~~gvGv~~~~~~~------~~~~~~v~~e~i~~av~~vm~--~~~~~~r~~a~~l~~~a~~A~~~GG 450 (468)
T PLN02207 379 YAEQQLNAFLMVKELKLAVELKLDYR------VHSDEIVNANEIETAIRCVMN--KDNNVVRKRVMDISQMIQRATKNGG 450 (468)
T ss_pred cccchhhHHHHHHHhCceEEEecccc------cccCCcccHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999988656999998853200 000124699999999999996 2467999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhc
Q 044823 469 SSYNNIKFFHPRYHAT 484 (497)
Q Consensus 469 ~~~~~~~~~~~~~~~~ 484 (497)
||++++++||+++..-
T Consensus 451 SS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 451 SSFAAIEKFIHDVIGI 466 (468)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999998754
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.9e-65 Score=510.79 Aligned_cols=441 Identities=27% Similarity=0.417 Sum_probs=329.0
Q ss_pred CCCCcEEEEecCCCcCCHHHHHHHHHH--HHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCC
Q 044823 4 ETSNFHFILLPFLAQGHLIPMFDIARL--LAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEG 81 (497)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~LA~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 81 (497)
...+.||+++|+|++||++|++.||+. |++||+.|||++++.+..+++... .....+++..++ +++|++
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~-----~glp~~ 75 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFS-----DGLPKD 75 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECC-----CCCCCC
Confidence 355679999999999999999999999 569999999999997765442211 111235555443 366655
Q ss_pred CCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhh
Q 044823 82 CENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRV 161 (497)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~ 161 (497)
.+. .....+......+...+++++++ .++||||+|.+..|+..+|+++|||.+.|++.++..+..+++...
T Consensus 76 ~~~-------~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~ 146 (456)
T PLN02210 76 DPR-------APETLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYM 146 (456)
T ss_pred ccc-------CHHHHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhh
Confidence 321 11111222223556778888887 689999999999999999999999999999999988887665432
Q ss_pred h-cccCCCCCCCccccCCCCCCCcccccccCCCCCCCc---hHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhc
Q 044823 162 S-KVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTD---ELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAK 237 (497)
Q Consensus 162 ~-~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 237 (497)
. ...........+..+|+++. ++.++++.++... .+..++.++.+....++++++|||.++|+.++++++. .
T Consensus 147 ~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~ 222 (456)
T PLN02210 147 KTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L 222 (456)
T ss_pred ccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c
Confidence 1 11111111112345788765 5667777644322 1233444444445677899999999999999998866 3
Q ss_pred CCceEEeCcCcCCC---ccchhh-hhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCe
Q 044823 238 QGKVWCIGPVSLCN---KESLDK-VERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPF 313 (497)
Q Consensus 238 ~~~~~~vGp~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 313 (497)
+++++|||++... ...... .......+..+.+|.+||+.+++++||||||||....+.+++.+++.+|+..+++|
T Consensus 223 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~f 301 (456)
T PLN02210 223 -KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPF 301 (456)
T ss_pred -CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 5799999997421 110000 00000112346779999999988899999999999999999999999999999999
Q ss_pred EEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccch
Q 044823 314 IWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQF 393 (497)
Q Consensus 314 i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~ 393 (497)
||+++...... .+.++.++...++.++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 302 lw~~~~~~~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~ 375 (456)
T PLN02210 302 LWVIRPKEKAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQP 375 (456)
T ss_pred EEEEeCCcccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccH
Confidence 99997542111 233455554334556779999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 044823 394 CNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNN 473 (497)
Q Consensus 394 ~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~ 473 (497)
.||+++++.+|+|+.+...+ .++.++.++|+++|+++|.| ++|+.||+||++|++.+++|+++||||.++
T Consensus 376 ~na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~ 445 (456)
T PLN02210 376 IDARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPGGSSARN 445 (456)
T ss_pred HHHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999973499999996431 01258999999999999976 568899999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 044823 474 IKFFHPRYHA 483 (497)
Q Consensus 474 ~~~~~~~~~~ 483 (497)
+++||+++..
T Consensus 446 l~~~v~~~~~ 455 (456)
T PLN02210 446 LDLFISDITI 455 (456)
T ss_pred HHHHHHHHhc
Confidence 9999998853
No 15
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.8e-65 Score=507.63 Aligned_cols=435 Identities=26% Similarity=0.385 Sum_probs=332.8
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
+++||+++|+|++||++|++.||+.|+++|++|||++++.+..+++... .....++|..+++|.. +++|.+.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCc-CCCCCccccc
Confidence 4689999999999999999999999999999999999997665554321 1122588888876643 4787765433
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhccc
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVH 165 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
..... .....+......+.+.++++++. .++||||+|. +.|+..+|+++|||++.|++++++..+++.++..
T Consensus 78 ~~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~---- 149 (446)
T PLN00414 78 SDLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA---- 149 (446)
T ss_pred ccchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh----
Confidence 32221 22223445556777888888876 6889999994 8899999999999999999999998887665211
Q ss_pred CCCCCCCccccCCCCCCC-ccccccc--CCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceE
Q 044823 166 ENVSSDSEYFKVPGFPHH-IEFTKVQ--LPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVW 242 (497)
Q Consensus 166 ~~~~~~~~~~~~P~~~~~-~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~ 242 (497)
.. ...+|++|.. +.++..+ ++.++.. ....+.+..+....++++++|||.+||+.++++++..++++++
T Consensus 150 -~~-----~~~~pg~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~ 221 (446)
T PLN00414 150 -EL-----GFPPPDYPLSKVALRGHDANVCSLFAN--SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVL 221 (446)
T ss_pred -hc-----CCCCCCCCCCcCcCchhhcccchhhcc--cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeE
Confidence 00 0123555531 1112222 2222221 1233444445567789999999999999999998776566899
Q ss_pred EeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCc
Q 044823 243 CIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNK 322 (497)
Q Consensus 243 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 322 (497)
.|||+....... . . ...++++.+|||+++++|||||||||....+.+++.+++.+|+..+.+|+|++.....
T Consensus 222 ~VGPl~~~~~~~-~----~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~ 293 (446)
T PLN00414 222 LTGPMLPEPQNK-S----G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKG 293 (446)
T ss_pred EEcccCCCcccc-c----C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Confidence 999996432110 0 0 1124679999999999999999999999999999999999999999999999986421
Q ss_pred hhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHH
Q 044823 323 LEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEV 402 (497)
Q Consensus 323 ~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~ 402 (497)
......+ +|++|.++++..++++.+|+||..||+|+++++|||||||||++||+++|||||++|+++||+.||++++++
T Consensus 294 ~~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~ 372 (446)
T PLN00414 294 SSTVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE 372 (446)
T ss_pred cccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHH
Confidence 1111223 899999999888999999999999999999999999999999999999999999999999999999999768
Q ss_pred HcceeEeccccccccccccccccccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 044823 403 LRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDG-EERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRY 481 (497)
Q Consensus 403 ~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 481 (497)
+|+|+.+..++ ++.++.++|+++++++|.|+ ++++.||++|+++++.+. ++||+| ..+++||+++
T Consensus 373 ~g~g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~ 438 (446)
T PLN00414 373 LEVSVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEAL 438 (446)
T ss_pred hCeEEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHH
Confidence 99999996430 01489999999999999875 568899999999999975 447744 3389999998
Q ss_pred hhc
Q 044823 482 HAT 484 (497)
Q Consensus 482 ~~~ 484 (497)
...
T Consensus 439 ~~~ 441 (446)
T PLN00414 439 ENE 441 (446)
T ss_pred HHh
Confidence 544
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5e-64 Score=504.09 Aligned_cols=429 Identities=27% Similarity=0.451 Sum_probs=327.1
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCC
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPE 80 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 80 (497)
|.. ..+.||+++|+|++||++|++.||+.|+++|++|||++++.+..++.+.+.. ..+++++.+|. ++++
T Consensus 1 ~~~-~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~ 70 (448)
T PLN02562 1 MKV-TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDD 70 (448)
T ss_pred CCC-CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCC
Confidence 553 3557999999999999999999999999999999999999876655443221 12588888763 3332
Q ss_pred CCCCCCCCCchhHHHHHHHHHH-hchHHHHHHHhhcC--CCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHH
Q 044823 81 GCENFDMLPSIDLAYNFLTSLQ-KLQLPFENLFREQT--PQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLD 157 (497)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~--~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~ 157 (497)
+. +. +.. .+...+. .+...++++++... .+++|||+|.+..|+..+|+++|||++.|+++++...+.++
T Consensus 71 ~~------~~-~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~ 142 (448)
T PLN02562 71 DP------PR-DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQ 142 (448)
T ss_pred Cc------cc-cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHH
Confidence 11 11 222 3333444 46777777777531 23589999999999999999999999999999998887766
Q ss_pred HhhhhcccCCC---CCC--Ccc-ccCCCCCCCcccccccCCCCCCC----chHHHHHHHHHHhcccccEEEecchhhhhH
Q 044823 158 ILRVSKVHENV---SSD--SEY-FKVPGFPHHIEFTKVQLPISPPT----DELKEFNEKILAADKKTYGVIINTFEELES 227 (497)
Q Consensus 158 ~~~~~~~~~~~---~~~--~~~-~~~P~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~ 227 (497)
+++.......+ +.+ ..+ ..+|++|. ++..+++.++.. ......+.+..+....++++++|||.+||+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~ 219 (448)
T PLN02562 143 AIPELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEY 219 (448)
T ss_pred HHHHHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCH
Confidence 65432111111 111 112 25788876 677888875432 122334444455567788999999999999
Q ss_pred HHHHHHHh----hcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcc-cCCHhhHHHH
Q 044823 228 ASVKEYKN----AKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSIC-NLTSSQLIEL 302 (497)
Q Consensus 228 ~~~~~~~~----~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~-~~~~~~~~~~ 302 (497)
.+++.+.. +..++++.|||+........ .....+..+.+|.+||+++++++||||||||+. ..+.+++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l 295 (448)
T PLN02562 220 DDVKNHQASYNNGQNPQILQIGPLHNQEATTI----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTL 295 (448)
T ss_pred HHHHHHHhhhccccCCCEEEecCccccccccc----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHH
Confidence 88886653 34578999999976432100 000001124567899999988899999999986 5789999999
Q ss_pred HHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCc
Q 044823 303 GLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQ 382 (497)
Q Consensus 303 ~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP 382 (497)
+.+|+..+++|||+++.+... . +|++|.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 296 ~~~l~~~g~~fiW~~~~~~~~----~--l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP 368 (448)
T PLN02562 296 ALALEASGRPFIWVLNPVWRE----G--LPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKR 368 (448)
T ss_pred HHHHHHCCCCEEEEEcCCchh----h--CCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCC
Confidence 999999999999999753211 1 777887766 567888899999999999999999999999999999999999
Q ss_pred EeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 044823 383 MLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKR 462 (497)
Q Consensus 383 ~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~ 462 (497)
||++|+++||+.||+++++.+|+|+.+. +++.++|.++|+++|+|+ +||+||+++++.+++
T Consensus 369 ~l~~P~~~DQ~~na~~~~~~~g~g~~~~---------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~ 429 (448)
T PLN02562 369 LLCYPVAGDQFVNCAYIVDVWKIGVRIS---------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMG 429 (448)
T ss_pred EEeCCcccchHHHHHHHHHHhCceeEeC---------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHh
Confidence 9999999999999999964579998873 368999999999999876 999999999999988
Q ss_pred HHhhCCChHHHHHHHHHHH
Q 044823 463 ALEEGGSSYNNIKFFHPRY 481 (497)
Q Consensus 463 ~~~~~g~~~~~~~~~~~~~ 481 (497)
+ ++||||.+++++||+++
T Consensus 430 ~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 430 E-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred c-CCCCCHHHHHHHHHHHh
Confidence 7 67899999999999976
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-64 Score=501.83 Aligned_cols=434 Identities=27% Similarity=0.455 Sum_probs=323.1
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEE--EeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHG--ATATI--VTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEG 81 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 81 (497)
+..||+++|+|++||++|++.||+.|+++| +.||+ ++++.+.......+........+++++.+|++. +.+..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~ 78 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSSS 78 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCCc
Confidence 356999999999999999999999999998 55665 444433322222222111112358999887531 11111
Q ss_pred CCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcC--CCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHh
Q 044823 82 CENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQT--PQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDIL 159 (497)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~ 159 (497)
.. ... .....+......+...+.+++++.. .+++|||+|.+..|+..+|+++|||.+.|++++++.++++.+.
T Consensus 79 ~~--~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 79 ST--SRH---HHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred cc--ccc---CHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 11 111 1122233333345555666666421 3469999999999999999999999999999999999988775
Q ss_pred hhhc-ccCCCCCC-CccccCCCCCCCcccccccCCCCCCCc--hHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHh
Q 044823 160 RVSK-VHENVSSD-SEYFKVPGFPHHIEFTKVQLPISPPTD--ELKEFNEKILAADKKTYGVIINTFEELESASVKEYKN 235 (497)
Q Consensus 160 ~~~~-~~~~~~~~-~~~~~~P~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 235 (497)
+... ........ ..+..+|++|. ++..+++.++... ....++.+..+....++++++|||++||+.+++.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~ 230 (451)
T PLN03004 154 PTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE 230 (451)
T ss_pred HhccccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh
Confidence 4321 10000101 12346788887 6778888755432 2234444455556778899999999999999999876
Q ss_pred hcC-CceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeE
Q 044823 236 AKQ-GKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFI 314 (497)
Q Consensus 236 ~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 314 (497)
.+. ++++.|||+....... . .. . ..+.+|.+||+++++++||||||||....+.+++++++.+|+.++++||
T Consensus 231 ~~~~~~v~~vGPl~~~~~~~-~----~~-~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~Fl 303 (451)
T PLN03004 231 ELCFRNIYPIGPLIVNGRIE-D----RN-D-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFL 303 (451)
T ss_pred cCCCCCEEEEeeeccCcccc-c----cc-c-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 543 6899999997422100 0 00 0 1245799999999888999999999999999999999999999999999
Q ss_pred EEEeCCCch-h---hhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcc
Q 044823 315 WVSRVGNKL-E---ELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFT 390 (497)
Q Consensus 315 ~~~~~~~~~-~---~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~ 390 (497)
|+++..... . ....+ +|++|.++.+..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 304 W~~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~ 382 (451)
T PLN03004 304 WVVRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYA 382 (451)
T ss_pred EEEcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccc
Confidence 999853110 0 12224 788999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCCh
Q 044823 391 DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSS 470 (497)
Q Consensus 391 DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~ 470 (497)
||+.||+++++++|+|+.++..+ .+.++.++|+++|+++|+|+ +||++|+++++..++|+++||||
T Consensus 383 DQ~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS 448 (451)
T PLN03004 383 EQRFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSS 448 (451)
T ss_pred cchhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999964689999997431 02579999999999999876 99999999999999999999998
Q ss_pred HH
Q 044823 471 YN 472 (497)
Q Consensus 471 ~~ 472 (497)
++
T Consensus 449 ~~ 450 (451)
T PLN03004 449 HT 450 (451)
T ss_pred CC
Confidence 64
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.3e-63 Score=503.31 Aligned_cols=441 Identities=30% Similarity=0.446 Sum_probs=332.7
Q ss_pred CCCCCcEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCC
Q 044823 3 SETSNFHFILLPFLAQGHLIPMFDIARLLAQH--GATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPE 80 (497)
Q Consensus 3 ~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 80 (497)
+++++.||+++|+|++||++|++.||+.|++| ||+|||++++.+..++++.. ...+++|+.+|. ++|.
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~ 75 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPS 75 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCC
Confidence 56889999999999999999999999999999 99999999997766554431 123689988762 3443
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhh
Q 044823 81 GCENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILR 160 (497)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~ 160 (497)
..+.. . +....+......+...+++++++...++||||+|.++.|+..+|+++|||++.++++++..++.++++.
T Consensus 76 ~~~~~--~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 76 ELVRA--A---DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred ccccc--c---CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 32211 1 111112222234566777777763346899999999999999999999999999999998888776654
Q ss_pred hhcccCCCCCC-----Cc-cccCCCCCCCcccccccCCCCCCCc--hHHHHHHHHHHhcccccEEEecchhhhhHHHHHH
Q 044823 161 VSKVHENVSSD-----SE-YFKVPGFPHHIEFTKVQLPISPPTD--ELKEFNEKILAADKKTYGVIINTFEELESASVKE 232 (497)
Q Consensus 161 ~~~~~~~~~~~-----~~-~~~~P~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 232 (497)
........+.. .. ...+|+++. ++..+++.++... ...+.+....+...+++++++||+++||+.++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 227 (459)
T PLN02448 151 LLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDA 227 (459)
T ss_pred hhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHH
Confidence 32111111110 11 113677665 5666777654332 2223333444455677899999999999999999
Q ss_pred HHhhcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCC
Q 044823 233 YKNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKP 312 (497)
Q Consensus 233 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~ 312 (497)
++..++++++.|||+......... .. .......+.++.+||+.++++++|||||||+...+.+++.+++++|+..+++
T Consensus 228 l~~~~~~~~~~iGP~~~~~~~~~~-~~-~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 228 LKSKFPFPVYPIGPSIPYMELKDN-SS-SSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHhhcCCceEEecCcccccccCCC-cc-ccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 977777789999999653211000 00 0000012357999999998889999999999888899999999999999999
Q ss_pred eEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccc
Q 044823 313 FIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQ 392 (497)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ 392 (497)
|||+.+.... ++.+.. .+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 306 ~lw~~~~~~~-----------~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ 373 (459)
T PLN02448 306 FLWVARGEAS-----------RLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQ 373 (459)
T ss_pred EEEEEcCchh-----------hHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccc
Confidence 9998764311 222221 3578888999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChH
Q 044823 393 FCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDG-EERDGRRRRAKEFGELAKRALEEGGSSY 471 (497)
Q Consensus 393 ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~~~~~~g~~~ 471 (497)
+.||+++++.+|+|+.+.... +..+.+++++|+++|+++|.|+ ++++.||+||++|++++++++.+||||.
T Consensus 374 ~~na~~v~~~~g~G~~~~~~~--------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~ 445 (459)
T PLN02448 374 PLNSKLIVEDWKIGWRVKREV--------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSD 445 (459)
T ss_pred hhhHHHHHHHhCceEEEeccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999974579999986320 0012579999999999999875 7899999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 044823 472 NNIKFFHPRYHA 483 (497)
Q Consensus 472 ~~~~~~~~~~~~ 483 (497)
+++++||+++..
T Consensus 446 ~~l~~~v~~~~~ 457 (459)
T PLN02448 446 TNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.3e-63 Score=495.01 Aligned_cols=437 Identities=24% Similarity=0.427 Sum_probs=324.8
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQ-HGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
.+.||+++|+|++||++|++.||+.|++ +|+.|||++++.+.. +...... ....+++|+.++ +++|++.+.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCcccc
Confidence 3569999999999999999999999996 699999999985422 1111111 111258888875 467665432
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhc---CCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhh
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQ---TPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRV 161 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~ 161 (497)
... .....+......+.+.+.+++++. +.+++|||+|.+..|+..+|+++|||.+.|++++++.++.+++...
T Consensus 74 ~~~----~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 74 NTD----DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred ccc----cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 111 222233334445566676666642 1345999999999999999999999999999999999888766542
Q ss_pred hcccCCCCCCCccccCCCCCCCcccccccCCCCCCC---c-hHHHHHHHHHHhcc--cccEEEecchhhhhHHHHHHHHh
Q 044823 162 SKVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPT---D-ELKEFNEKILAADK--KTYGVIINTFEELESASVKEYKN 235 (497)
Q Consensus 162 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~---~-~~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~ 235 (497)
. ......+|++|. ++..+++.++.. . .+...+.+..+... .++++++|||.+||+.++++++.
T Consensus 150 ~--------~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 150 G--------NNSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred c--------CCCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 1 112345788876 677788875532 1 22334434444332 24699999999999999988854
Q ss_pred hcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEE
Q 044823 236 AKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIW 315 (497)
Q Consensus 236 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 315 (497)
.+++.|||+.+...............+..+.++.+||+++++++||||||||+...+.+++++++.+|+.++++|||
T Consensus 219 ---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 219 ---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred ---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 26999999975321000000000000122458999999998889999999999999999999999999999999999
Q ss_pred EEeCCCch-----hhhhhhh-chhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCc
Q 044823 316 VSRVGNKL-----EELEKWL-VEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 389 (497)
Q Consensus 316 ~~~~~~~~-----~~~~~~~-lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~ 389 (497)
+++.+... .....++ +|++|.++. .+|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 374 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW 374 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99853110 0000010 367887765 4566777999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCC
Q 044823 390 TDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGS 469 (497)
Q Consensus 390 ~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~ 469 (497)
+||+.||+++++.+|+|+.+..+. ++.++.++|+++|+++|+| +++.||+||++|+++++++..+||+
T Consensus 375 ~DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~--~~~~~r~~a~~~~~~~~~a~~~ggs 442 (455)
T PLN02152 375 SDQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEE--KSVELRESAEKWKRLAIEAGGEGGS 442 (455)
T ss_pred ccchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999975568887775321 1246999999999999964 4568999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 044823 470 SYNNIKFFHPRY 481 (497)
Q Consensus 470 ~~~~~~~~~~~~ 481 (497)
|++++++||+++
T Consensus 443 S~~nl~~li~~i 454 (455)
T PLN02152 443 SDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHHHh
Confidence 999999999976
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-63 Score=503.64 Aligned_cols=451 Identities=27% Similarity=0.399 Sum_probs=329.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhh---HHHHHHhhh-cCCCeEEEEecCCccccCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHG--ATATIVTTPVNAARF---KTVLARALQ-CRLQIRLIEIQFPWQEAGLPE 80 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rG--h~Vt~~~~~~~~~~~---~~~~~~~~~-~~~~i~~~~i~~~~~~~~~~~ 80 (497)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ ...+.+... ...+|+++.+|++. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-----~~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD-----QP 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----CC
Confidence 57999999999999999999999999998 889999998775432 111221110 12358999887532 11
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhc---CCC-CeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHH
Q 044823 81 GCENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQ---TPQ-PCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCL 156 (497)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~ 156 (497)
. .. . . .....+......+.+.+++++.+. +.+ .+|||+|.++.|+..+|+++|||++.|++++++.++++
T Consensus 77 ~-~~---~-~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 77 T-TE---D-P-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c-cc---c-h-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 1 00 0 1 222222222334455555554321 113 48999999999999999999999999999999999988
Q ss_pred HHhhhhcccC-----CCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHH
Q 044823 157 DILRVSKVHE-----NVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVK 231 (497)
Q Consensus 157 ~~~~~~~~~~-----~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~ 231 (497)
++++...... .+.....+..+|+++.. ++..+++.++....+...+.+..+....++++++|++.++++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 8765432110 11111123457887421 5666777655443334445555566778999999999999999888
Q ss_pred HHHhh--cCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhC
Q 044823 232 EYKNA--KQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS 309 (497)
Q Consensus 232 ~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 309 (497)
.+... ..++++.|||+......... . ....++++.+||+++++++||||||||+...+.+++.+++.+|+.+
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~~-----~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~ 302 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGDD-----S-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERS 302 (481)
T ss_pred HHHhcccCCCCEEEeCCCccccccccc-----c-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 88653 23689999999432211100 0 0113578999999998888999999999888999999999999999
Q ss_pred CCCeEEEEeCCCc---------hhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhC
Q 044823 310 KKPFIWVSRVGNK---------LEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAG 380 (497)
Q Consensus 310 ~~~~i~~~~~~~~---------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~G 380 (497)
+++|||+++.... .....++ +|++|.++.. +|+++++|+||.+||+|+++++|||||||||++||+++|
T Consensus 303 ~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 303 GHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred CCCeEEEEcCCcccccccccccccchhhh-CChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 9999999975311 0011223 6888887764 566777999999999999999999999999999999999
Q ss_pred CcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 044823 381 VQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELA 460 (497)
Q Consensus 381 vP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~ 460 (497)
||||++|+++||+.||+++++++|+|+.++.... ..+ ..+.++.++.++|+++|+++|++. +.||+||+++++++
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~-~~~-~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~ 455 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR-GDL-LAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKC 455 (481)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEeecccc-ccc-cccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 9999999999999999553369999999964100 000 000112689999999999999621 39999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHhh
Q 044823 461 KRALEEGGSSYNNIKFFHPRYHA 483 (497)
Q Consensus 461 ~~~~~~~g~~~~~~~~~~~~~~~ 483 (497)
++++++||+|.+++++||+++.-
T Consensus 456 ~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 456 HVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred HHHhcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999998753
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.3e-62 Score=494.91 Aligned_cols=456 Identities=28% Similarity=0.463 Sum_probs=322.0
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCC---eEEEEeCCcchh-hhHHHHHHhhhcCCCeEEEEecCCccccCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGA---TATIVTTPVNAA-RFKTVLARALQCRLQIRLIEIQFPWQEAGLPEG 81 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 81 (497)
+..||+++|+|++||++|++.||+.|+.+|. .||+++++.+.. ..+..+........+|+|+.+|++. . +.+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~~ 77 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PPP 77 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Ccc
Confidence 5679999999999999999999999999984 567766554322 1222222111112359999987542 1 111
Q ss_pred CCCCCCCCchhHHHHHH-HHHHhchHHHHHHHhhc---CC-CCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHH
Q 044823 82 CENFDMLPSIDLAYNFL-TSLQKLQLPFENLFREQ---TP-QPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCL 156 (497)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~---~~-~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~ 156 (497)
.+..... ....+..+. .....+.+.+.+++.+. +. +++|||+|.+..|+..+|+++|||.+.|++++++.++++
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~ 156 (475)
T PLN02167 78 MELFVKA-SEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMM 156 (475)
T ss_pred ccccccc-hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 1100100 101122222 12223334444433221 01 459999999999999999999999999999999988887
Q ss_pred HHhhhh-cccC-CC--CCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHH
Q 044823 157 DILRVS-KVHE-NV--SSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKE 232 (497)
Q Consensus 157 ~~~~~~-~~~~-~~--~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 232 (497)
++.+.. .... .. .....+..+|+++.. ++..+++.++........+....+....++++++|||++||+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 157 KYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred HHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 765431 1111 00 011133457888432 45566665332222222333444556778899999999999999998
Q ss_pred HHhhc--CCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCC
Q 044823 233 YKNAK--QGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASK 310 (497)
Q Consensus 233 ~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~ 310 (497)
++... -++++.|||++....... .......+.++.+||+.+++++||||||||+...+.+++.+++.+|+.++
T Consensus 235 l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 235 FSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred HHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 86541 158999999976321100 00001124679999999988899999999998889999999999999999
Q ss_pred CCeEEEEeCCCch-hhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCc
Q 044823 311 KPFIWVSRVGNKL-EELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 389 (497)
Q Consensus 311 ~~~i~~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~ 389 (497)
++|||+++..... .....+ +|++|.++++... ++++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 310 ~~flw~~~~~~~~~~~~~~~-lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 310 CRFLWSIRTNPAEYASPYEP-LPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred CcEEEEEecCcccccchhhh-CChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9999999753211 011122 7889988775544 666999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCC
Q 044823 390 TDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGS 469 (497)
Q Consensus 390 ~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~ 469 (497)
+||+.||+++++++|+|+.+..... .+ .++.++.++|+++|+++|.++ +.||+||+++++.+++++++|||
T Consensus 388 ~DQ~~na~~~~~~~g~g~~~~~~~~-----~~-~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 388 AEQQLNAFTMVKELGLAVELRLDYV-----SA-YGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred ccchhhHHHHHHHhCeeEEeecccc-----cc-cCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999874369999999864200 00 012579999999999999754 38999999999999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 044823 470 SYNNIKFFHPRYHAT 484 (497)
Q Consensus 470 ~~~~~~~~~~~~~~~ 484 (497)
|.+++++||+++..+
T Consensus 459 S~~~l~~~v~~i~~~ 473 (475)
T PLN02167 459 SFVAVKRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998754
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.8e-50 Score=407.93 Aligned_cols=425 Identities=16% Similarity=0.159 Sum_probs=289.2
Q ss_pred CcEEEEe-cCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccc--cCCCC-C-
Q 044823 7 NFHFILL-PFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQE--AGLPE-G- 81 (497)
Q Consensus 7 ~~~vl~~-~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~--~~~~~-~- 81 (497)
..||+.+ |.++.+|..-+-+|+++|++|||+||++++..... .... ...+++.+.++..... +.... .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4568755 88999999999999999999999999997752110 0000 1235666555321111 00000 0
Q ss_pred CCCCCCC-CchhH----HHHHHHHHHh--chHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHc-CCCeEEEechhHHHH
Q 044823 82 CENFDML-PSIDL----AYNFLTSLQK--LQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKF-NVPRIIFHGFSCFCL 153 (497)
Q Consensus 82 ~~~~~~~-~~~~~----~~~~~~~~~~--~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~l-gIP~i~~~~~~~~~~ 153 (497)
....... ..... +..+...++. ..+.+.++++....+||+||+|.+..|+..+|+++ ++|.|.++++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 0000000 00011 1111112221 23556777761126899999999989999999999 999988877654432
Q ss_pred HHHHHhhhhcccCCCC-CCCccccCCCCCCCcc--ccc-ccCCCCCCC-----------chHHHHHHHH--------HHh
Q 044823 154 LCLDILRVSKVHENVS-SDSEYFKVPGFPHHIE--FTK-VQLPISPPT-----------DELKEFNEKI--------LAA 210 (497)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~~--~~~-~~l~~~~~~-----------~~~~~~~~~~--------~~~ 210 (497)
.. ..++ .+..+.++|.+..... +.. .++.+++.. ....+..++. .+.
T Consensus 173 ~~----------~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l 242 (507)
T PHA03392 173 NF----------ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIREL 242 (507)
T ss_pred HH----------HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHH
Confidence 11 1122 4555667775544321 111 111111100 0111111111 122
Q ss_pred cccccEEEecchhhhhHHHHHHHHhhcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCC
Q 044823 211 DKKTYGVIINTFEELESASVKEYKNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGS 290 (497)
Q Consensus 211 ~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS 290 (497)
.+....+++|+...++ +++++++++++|||+..+.... ...++++.+|++.++ +++|||||||
T Consensus 243 ~~~~~l~lvns~~~~d------~~rp~~p~v~~vGgi~~~~~~~----------~~l~~~l~~fl~~~~-~g~V~vS~GS 305 (507)
T PHA03392 243 RNRVQLLFVNVHPVFD------NNRPVPPSVQYLGGLHLHKKPP----------QPLDDYLEEFLNNST-NGVVYVSFGS 305 (507)
T ss_pred HhCCcEEEEecCcccc------CCCCCCCCeeeecccccCCCCC----------CCCCHHHHHHHhcCC-CcEEEEECCC
Confidence 2344567888888777 3468899999999997643111 124789999999875 4699999999
Q ss_pred ccc---CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccc
Q 044823 291 ICN---LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTH 367 (497)
Q Consensus 291 ~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItH 367 (497)
+.. .+.++++.+++|+++.+++|||+++.... +.+ .++|+++.+|+||.+||+|+++++||||
T Consensus 306 ~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~---------~~~-----~p~Nv~i~~w~Pq~~lL~hp~v~~fItH 371 (507)
T PHA03392 306 SIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE---------AIN-----LPANVLTQKWFPQRAVLKHKNVKAFVTQ 371 (507)
T ss_pred CCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC---------ccc-----CCCceEEecCCCHHHHhcCCCCCEEEec
Confidence 875 46788999999999999999999976432 101 2679999999999999999999999999
Q ss_pred cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhH
Q 044823 368 CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERD 447 (497)
Q Consensus 368 gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~ 447 (497)
||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++.. .+++++|.++|+++|+|+
T Consensus 372 GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-------------~~t~~~l~~ai~~vl~~~---- 433 (507)
T PHA03392 372 GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-------------TVSAAQLVLAIVDVIENP---- 433 (507)
T ss_pred CCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-------------CcCHHHHHHHHHHHhCCH----
Confidence 99999999999999999999999999999999 599999999987 689999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh-hccCccCCcccccCC
Q 044823 448 GRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYH-ATADLRSDVNVVPLI 497 (497)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 497 (497)
+|++||+++++.+++....+-......-|++.+.. ++.+||+.-++++++
T Consensus 434 ~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g~~~lr~~~~~l~~~ 484 (507)
T PHA03392 434 KYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYS 484 (507)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCHH
Confidence 99999999999999641112122222335556666 778999998888763
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-51 Score=428.07 Aligned_cols=417 Identities=23% Similarity=0.275 Sum_probs=222.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCC-
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDM- 87 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~- 87 (497)
||+++|+ +.||+.++..|+++|++|||+||++++.... .+... ....+++..++.+...............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888885 7899999999999999999999999865211 11111 1124555555432111111111100000
Q ss_pred ----CCchhHHHHHHHHHHh----ch---------HHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhH
Q 044823 88 ----LPSIDLAYNFLTSLQK----LQ---------LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSC 150 (497)
Q Consensus 88 ----~~~~~~~~~~~~~~~~----~~---------~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~ 150 (497)
................ .. ..+.+.+++ .++|++|+|.+..|+..+|+.+|+|.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 0000011111111100 00 122223444 5899999999989999999999999986433221
Q ss_pred HHHHHHHHhhhhcccCCC-CCCCccccCCCCCCCcc--ccc-ccCCCCCCCchHHHHHHHH-HHh---------------
Q 044823 151 FCLLCLDILRVSKVHENV-SSDSEYFKVPGFPHHIE--FTK-VQLPISPPTDELKEFNEKI-LAA--------------- 210 (497)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~~--~~~-~~l~~~~~~~~~~~~~~~~-~~~--------------- 210 (497)
.. ...... +.+..+.++|.....+. +.. .++.+++.. ....+.... ...
T Consensus 152 ~~----------~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (500)
T PF00201_consen 152 MY----------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFY-LYFRFIFRYFFSPQDKLYKKYFGFPFSF 220 (500)
T ss_dssp CS----------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHH-HHHHHHHHHGGGS-TTS-EEESS-GGGC
T ss_pred cc----------hhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhh-hhhccccccchhhHHHHHhhhccccccc
Confidence 11 011111 33445555664433221 111 111121110 000111110 000
Q ss_pred ---cccccEEEecchhhhhHHHHHHHHhhcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEe
Q 044823 211 ---DKKTYGVIINTFEELESASVKEYKNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVC 287 (497)
Q Consensus 211 ---~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs 287 (497)
......+++|+...++ ++++++|++++||++......+ .+.+++.|++...++++||||
T Consensus 221 ~~~~~~~~l~l~ns~~~ld------~prp~~p~v~~vGgl~~~~~~~------------l~~~~~~~~~~~~~~~vv~vs 282 (500)
T PF00201_consen 221 RELLSNASLVLINSHPSLD------FPRPLLPNVVEVGGLHIKPAKP------------LPEELWNFLDSSGKKGVVYVS 282 (500)
T ss_dssp HHHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----T------------CHHHHHHHTSTTTTTEEEEEE
T ss_pred HHHHHHHHHHhhhccccCc------CCcchhhcccccCccccccccc------------cccccchhhhccCCCCEEEEe
Confidence 0111112333333332 2345668999999997654432 478899999985456899999
Q ss_pred eCCcccCC-HhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCcccccc
Q 044823 288 LGSICNLT-SSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLT 366 (497)
Q Consensus 288 ~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~It 366 (497)
|||+.... .+..++++++|++.+++|||+++... +..+ ++|+++.+|+||.+||+|+++++|||
T Consensus 283 fGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~----------~~~l-----~~n~~~~~W~PQ~~lL~hp~v~~fit 347 (500)
T PF00201_consen 283 FGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP----------PENL-----PKNVLIVKWLPQNDLLAHPRVKLFIT 347 (500)
T ss_dssp -TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH----------GCHH-----HTTEEEESS--HHHHHTSTTEEEEEE
T ss_pred cCcccchhHHHHHHHHHHHHhhCCCcccccccccc----------cccc-----cceEEEeccccchhhhhcccceeeee
Confidence 99998644 44478999999999999999997732 1122 46999999999999999999999999
Q ss_pred ccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhh
Q 044823 367 HCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEER 446 (497)
Q Consensus 367 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~ 446 (497)
|||+||++||+++|||||++|+++||+.||+++ ++.|+|+.++.. .+++++|.++|+++|+|+
T Consensus 348 HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~~--- 410 (500)
T PF00201_consen 348 HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-------------DLTEEELRAAIREVLENP--- 410 (500)
T ss_dssp S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHSH---
T ss_pred ccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-------------CCcHHHHHHHHHHHHhhh---
Confidence 999999999999999999999999999999999 599999999987 799999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccCccCCcccccCC
Q 044823 447 DGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYHATADLRSDVNVVPLI 497 (497)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (497)
+|++||++++.+++......-.......|++.+..++.+||+.-.++|++
T Consensus 411 -~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~~~l~~~~~~l~~~ 460 (500)
T PF00201_consen 411 -SYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGGAPHLRSPARDLSFY 460 (500)
T ss_dssp -HHHHHHHHHHHTTT------------------------------------
T ss_pred -HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCcccCChhhcCCHH
Confidence 99999999999999876666666666778999999999999999888875
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.4e-43 Score=356.14 Aligned_cols=377 Identities=19% Similarity=0.185 Sum_probs=250.7
Q ss_pred ecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchh
Q 044823 13 LPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSID 92 (497)
Q Consensus 13 ~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 92 (497)
+.+|++||++|++.||++|+++||+|+|++++.+.+.+++. ++.|+.++........... .. ......
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~--~~-~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE--NT-EEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc--cc-CcchHH
Confidence 46899999999999999999999999999999554444333 7888877642111001111 00 011122
Q ss_pred HHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccCCCCCCC
Q 044823 93 LAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHENVSSDS 172 (497)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
....+..........+.++++. .+||+||+|.+++++..+|+++|||+|.+++.+..... +
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-------------~---- 129 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE-------------F---- 129 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc-------------c----
Confidence 2333333333344455666666 79999999998889999999999999987644321100 0
Q ss_pred ccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcc------------cccEEEecchhhhhHHHHHHHHhhcCCc
Q 044823 173 EYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADK------------KTYGVIINTFEELESASVKEYKNAKQGK 240 (497)
Q Consensus 173 ~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 240 (497)
+...|.+.... +........ ....+...+..+.+... .....+.. .++++.+.+..++++
T Consensus 130 -~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~-----~~~~l~~~~~~~~~~ 201 (392)
T TIGR01426 130 -EEMVSPAGEGS-AEEGAIAER-GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVY-----TPKAFQPAGETFDDS 201 (392)
T ss_pred -cccccccchhh-hhhhccccc-hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEe-----CChHhCCCccccCCC
Confidence 00000000000 000000000 00111111111111110 00001222 223343344567899
Q ss_pred eEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCC
Q 044823 241 VWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVG 320 (497)
Q Consensus 241 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 320 (497)
++++||+..... +...|....+++++||||+||+.......+..+++++.+.+.+++|..+..
T Consensus 202 ~~~~Gp~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~ 264 (392)
T TIGR01426 202 FTFVGPCIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG 264 (392)
T ss_pred eEEECCCCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 999999865322 112366555567799999999877667788899999999999999998765
Q ss_pred CchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHH
Q 044823 321 NKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIV 400 (497)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~ 400 (497)
..... +. ..++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++
T Consensus 265 ~~~~~---------~~--~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l- 330 (392)
T TIGR01426 265 VDPAD---------LG--ELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI- 330 (392)
T ss_pred CChhH---------hc--cCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-
Confidence 32111 11 12579999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 044823 401 EVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPR 480 (497)
Q Consensus 401 e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 480 (497)
+++|+|+.+... .+++++|.++|.++|+|+ +|+++++++++.++.. +|. ..+.++|+.
T Consensus 331 ~~~g~g~~l~~~-------------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~~---~~~--~~aa~~i~~ 388 (392)
T TIGR01426 331 AELGLGRHLPPE-------------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIREA---GGA--RRAADEIEG 388 (392)
T ss_pred HHCCCEEEeccc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHc---CCH--HHHHHHHHH
Confidence 599999998766 689999999999999987 8999999999998864 443 455555555
Q ss_pred H
Q 044823 481 Y 481 (497)
Q Consensus 481 ~ 481 (497)
+
T Consensus 389 ~ 389 (392)
T TIGR01426 389 F 389 (392)
T ss_pred h
Confidence 4
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.7e-43 Score=354.64 Aligned_cols=386 Identities=15% Similarity=0.105 Sum_probs=244.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCC-CCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEG-CENFD 86 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~-~~~~~ 86 (497)
|||+|+++|+.||++|++.||++|++|||+|+|++++... ..++. .+++|+.++.+......... .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~----~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFA----DLVEA-----AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHH----HHHHH-----cCCceeeCCCCHHHHHhhhhhccccc
Confidence 6999999999999999999999999999999999999443 33332 37888877532211000000 00000
Q ss_pred CCCc---hhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhc
Q 044823 87 MLPS---IDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSK 163 (497)
Q Consensus 87 ~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~ 163 (497)
.... ......+......+...+.+.+++ +++|+||+|.+.+++..+|+++|||++.+++++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc--------
Confidence 0000 011111222223444445555555 899999999988899999999999999988765432110
Q ss_pred ccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEe------cchhh--hhHHHHHHHHh
Q 044823 164 VHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVII------NTFEE--LESASVKEYKN 235 (497)
Q Consensus 164 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~s~~~--l~~~~~~~~~~ 235 (497)
..|.+ . ..............+........+..+...|+-. ..... ...+.+.....
T Consensus 142 ------------~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (401)
T cd03784 142 ------------FPPPL-G---RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPP 205 (401)
T ss_pred ------------CCCcc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCC
Confidence 00000 0 0000000000000000001111111111111100 00000 00111122234
Q ss_pred hcCCceEEeC-cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCC-HhhHHHHHHHHHhCCCCe
Q 044823 236 AKQGKVWCIG-PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLT-SSQLIELGLGLEASKKPF 313 (497)
Q Consensus 236 ~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~-~~~~~~~~~al~~~~~~~ 313 (497)
+++++..++| ++...... ...+.++..|++.. +++||||+||+.... ...+..++++++..+.++
T Consensus 206 ~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 206 DWPRFDLVTGYGFRDVPYN-----------GPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred CccccCcEeCCCCCCCCCC-----------CCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 4556666775 33222111 11356778888764 458999999998744 467778899999999999
Q ss_pred EEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccch
Q 044823 314 IWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQF 393 (497)
Q Consensus 314 i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~ 393 (497)
||+++...... ...++|+++.+|+||..+|+++++ ||||||+||++||+++|||+|++|+..||+
T Consensus 273 i~~~g~~~~~~-------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~ 337 (401)
T cd03784 273 ILSLGWGGLGA-------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337 (401)
T ss_pred EEEccCccccc-------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcH
Confidence 99998754210 012579999999999999999998 999999999999999999999999999999
Q ss_pred hhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 044823 394 CNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNN 473 (497)
Q Consensus 394 ~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~ 473 (497)
.||+++ +++|+|+.++.. .+++++|.+++.+++++ .++++++++++.++.. +| ...
T Consensus 338 ~~a~~~-~~~G~g~~l~~~-------------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~~---~g--~~~ 393 (401)
T cd03784 338 FWAARV-AELGAGPALDPR-------------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIREE---DG--VPS 393 (401)
T ss_pred HHHHHH-HHCCCCCCCCcc-------------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHhc---cC--HHH
Confidence 999999 599999999876 58999999999999985 5566677777666533 33 356
Q ss_pred HHHHHHH
Q 044823 474 IKFFHPR 480 (497)
Q Consensus 474 ~~~~~~~ 480 (497)
+.++|++
T Consensus 394 ~~~~ie~ 400 (401)
T cd03784 394 AADVIER 400 (401)
T ss_pred HHHHHhh
Confidence 6666654
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=5.9e-42 Score=355.40 Aligned_cols=424 Identities=29% Similarity=0.395 Sum_probs=261.5
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEE---EEecCCccccCCCCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRL---IEIQFPWQEAGLPEGCE 83 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~i~~~~~~~~~~~~~~ 83 (497)
..+++++++|++||++|++.||+.|+++||+||++++..+........ ....+.. ...++....++++...+
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSS-----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcc-----cceeeeeeecChHHhhhhhhhhccchH
Confidence 568899999999999999999999999999999999885443221110 0001111 11111101112222221
Q ss_pred CCCCCCchhHHHHHHHHHHh-chHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcC-CCeEEEechhHHHHHHHHHhhh
Q 044823 84 NFDMLPSIDLAYNFLTSLQK-LQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFN-VPRIIFHGFSCFCLLCLDILRV 161 (497)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lg-IP~i~~~~~~~~~~~~~~~~~~ 161 (497)
... .........+...+.. +.............++|++|+|.+..+...++...+ ++...+.+..+.......+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~-- 156 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPS-- 156 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcC--
Confidence 110 0000001112222222 222222322221234999999998777777777775 88888777776665433211
Q ss_pred hcccCCCCCCCccccCCCCCCCcc---ccccc---------CCCCCCC----chHHHHHHHHH----HhcccccEEEecc
Q 044823 162 SKVHENVSSDSEYFKVPGFPHHIE---FTKVQ---------LPISPPT----DELKEFNEKIL----AADKKTYGVIINT 221 (497)
Q Consensus 162 ~~~~~~~~~~~~~~~~P~~~~~~~---~~~~~---------l~~~~~~----~~~~~~~~~~~----~~~~~~~~~l~~s 221 (497)
...++|....... +...+ ++.+... ........... .......+++.++
T Consensus 157 -----------~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 157 -----------PLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred -----------cccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 1112332211000 00000 0000000 00000000000 0001112334444
Q ss_pred -hhhhhHHHHHHH-HhhcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCC--eEEEEeeCCcc---cC
Q 044823 222 -FEELESASVKEY-KNAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPS--SVVYVCLGSIC---NL 294 (497)
Q Consensus 222 -~~~l~~~~~~~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vv~vs~GS~~---~~ 294 (497)
+..+++.....+ .++..++++.|||+....... ..+.+..|++..+.. ++|||||||+. ..
T Consensus 226 ~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred eEEEEccCcccCCCCCCCCCCceEECcEEecCccc------------cccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 555555444444 444568999999998763221 011345566655444 79999999999 68
Q ss_pred CHhhHHHHHHHHHhC-CCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhh-hccCCccccccccCchh
Q 044823 295 TSSQLIELGLGLEAS-KKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMI-LSHPAVGGFLTHCGWNS 372 (497)
Q Consensus 295 ~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~l-L~~~~~~~~ItHgG~gs 372 (497)
+.++..+++.+|+.. +++|+|+++...... +++++.++ ..+||...+|+||.++ |+|+++++|||||||||
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 899999999999999 889999998764321 12222111 2458899899999998 69999999999999999
Q ss_pred HHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHH
Q 044823 373 SLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRR 452 (497)
Q Consensus 373 ~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~ 452 (497)
++|++++|||+|++|+++||+.||++++ +.|.|..+... ..+.+.+..++.++++++ +|+++
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~-------------~~~~~~~~~~~~~il~~~----~y~~~ 428 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR-------------DLVSEELLEAIKEILENE----EYKEA 428 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh-------------hcCcHHHHHHHHHHHcCh----HHHHH
Confidence 9999999999999999999999999996 77777777665 356656999999999988 99999
Q ss_pred HHHHHHHHHHHHhhCCChHHHHH---HHHHHHhhccCccCC
Q 044823 453 AKEFGELAKRALEEGGSSYNNIK---FFHPRYHATADLRSD 490 (497)
Q Consensus 453 a~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~ 490 (497)
++++++.++.- ..+. ..+. +++.+.....++++-
T Consensus 429 ~~~l~~~~~~~---p~~~-~~~~~~~e~~~~~~~~~~l~~~ 465 (496)
T KOG1192|consen 429 AKRLSEILRDQ---PISP-ELAVKWVEFVARHGGAKHLKEA 465 (496)
T ss_pred HHHHHHHHHcC---CCCH-HHHHHHHHHHHhcCCCcccCcc
Confidence 99999998854 3333 3334 777777767777765
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-40 Score=327.41 Aligned_cols=392 Identities=18% Similarity=0.190 Sum_probs=247.0
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
+|||+|+..|++||++|++.||++|.++||+|+|++++ .+++.++.+ ++.|...+... ..........
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~----~~~~~ve~a-----g~~f~~~~~~~---~~~~~~~~~~ 68 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTG----KFKEFVEAA-----GLAFVAYPIRD---SELATEDGKF 68 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCH----HHHHHHHHh-----CcceeeccccC---Chhhhhhhhh
Confidence 58999999999999999999999999999999999999 455554433 55566554210 0001100010
Q ss_pred CCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccC
Q 044823 87 MLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHE 166 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
.. ...+............++.+.+.+ ..+|+++.|...+.+ .+++..++|++.............. ....
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 138 (406)
T COG1819 69 AG--VKSFRRLLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG-----LPLP 138 (406)
T ss_pred hc--cchhHHHhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc-----cCcc
Confidence 00 111111222333445566666777 799999999765555 8899999998874333221111000 0000
Q ss_pred CCCCCCccccCCCCCCCcccccccCCCCCCCchH-HHHHHHHHHhcccccEEEecchh-------hhhHHHHHHHH---h
Q 044823 167 NVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDEL-KEFNEKILAADKKTYGVIINTFE-------ELESASVKEYK---N 235 (497)
Q Consensus 167 ~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~~-------~l~~~~~~~~~---~ 235 (497)
.+... .....+..+ +......+....... .....+. ........+.+. .++..+.+... .
T Consensus 139 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (406)
T COG1819 139 PVGIA-GKLPIPLYP----LPPRLVRPLIFARSWLPKLVVRR----NLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGD 209 (406)
T ss_pred ccccc-ccccccccc----cChhhccccccchhhhhhhhhhh----hccccccccchHHHhcCCCCccccccccccCCCC
Confidence 00000 000000000 000000000000000 0000000 000000000000 01101100000 1
Q ss_pred hcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEE
Q 044823 236 AKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIW 315 (497)
Q Consensus 236 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 315 (497)
.+|....++||+.... ..+...|.. .++++||+|+||.... .++++.+++++...+.++|.
T Consensus 210 ~~p~~~~~~~~~~~~~----------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~ 270 (406)
T COG1819 210 RLPFIGPYIGPLLGEA----------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIV 270 (406)
T ss_pred CCCCCcCccccccccc----------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEE
Confidence 1233334455553321 333444533 2356999999999977 88999999999999999999
Q ss_pred EEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhh
Q 044823 316 VSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCN 395 (497)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~n 395 (497)
.++. .... . . ..++|+++.+|+||..+|+++++ ||||||+||++|||++|||+|++|...||+.|
T Consensus 271 ~~~~-~~~~-~----~-------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~n 335 (406)
T COG1819 271 SLGG-ARDT-L----V-------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLN 335 (406)
T ss_pred eccc-cccc-c----c-------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHH
Confidence 9976 2210 1 1 12679999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHH
Q 044823 396 EKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIK 475 (497)
Q Consensus 396 a~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~ 475 (497)
|.|+ |+.|+|+.++.+ .++++.|+++|+++|+|+ .|+++++++++.++.. +| .+.+.
T Consensus 336 A~rv-e~~G~G~~l~~~-------------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~---~g--~~~~a 392 (406)
T COG1819 336 AERV-EELGAGIALPFE-------------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE---DG--PAKAA 392 (406)
T ss_pred HHHH-HHcCCceecCcc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc---cc--HHHHH
Confidence 9999 699999999987 699999999999999998 9999999999999976 66 57788
Q ss_pred HHHHHHhhccC
Q 044823 476 FFHPRYHATAD 486 (497)
Q Consensus 476 ~~~~~~~~~~~ 486 (497)
+.|+++...+.
T Consensus 393 ~~le~~~~~~~ 403 (406)
T COG1819 393 DLLEEFAREKK 403 (406)
T ss_pred HHHHHHHhccc
Confidence 88888766544
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=1.8e-24 Score=212.38 Aligned_cols=323 Identities=16% Similarity=0.118 Sum_probs=202.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDM 87 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 87 (497)
.||+|.+.++-||++|.++||++|.++||+|.|++.....+ ..+ ....++.+..++.. ++...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e---~~l----~~~~g~~~~~~~~~----~l~~~------ 64 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIE---KTI----IEKENIPYYSISSG----KLRRY------ 64 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccc---ccc----CcccCCcEEEEecc----CcCCC------
Confidence 47999999999999999999999999999999998764332 111 12235667666421 11110
Q ss_pred CCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCc--chHHHHHHcCCCeEEEechhHHHHHHHHHhhhhccc
Q 044823 88 LPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIP--WTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVH 165 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
. ....+...+.... ..-....++++ .+||+||+..... .+..+|..+++|++...
T Consensus 65 ~-~~~~~~~~~~~~~-~~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e------------------- 121 (352)
T PRK12446 65 F-DLKNIKDPFLVMK-GVMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE------------------- 121 (352)
T ss_pred c-hHHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEEC-------------------
Confidence 0 1111212221111 22233445777 8999999876433 46889999999998842
Q ss_pred CCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcC-CceEEe
Q 044823 166 ENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQ-GKVWCI 244 (497)
Q Consensus 166 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~v 244 (497)
....|++.. +++.++ +..+ .-+|++. ...++ .++.++
T Consensus 122 --------~n~~~g~~n-------------------r~~~~~------a~~v-~~~f~~~--------~~~~~~~k~~~t 159 (352)
T PRK12446 122 --------SDMTPGLAN-------------------KIALRF------ASKI-FVTFEEA--------AKHLPKEKVIYT 159 (352)
T ss_pred --------CCCCccHHH-------------------HHHHHh------hCEE-EEEccch--------hhhCCCCCeEEE
Confidence 122222211 122211 2222 2223211 11222 578899
Q ss_pred CcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCC-HhhHHHHHHHHHhCCCCeEEEEeCCCch
Q 044823 245 GPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLT-SSQLIELGLGLEASKKPFIWVSRVGNKL 323 (497)
Q Consensus 245 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~ 323 (497)
|+.+....... ......+.+.-.+++++|+|..||..... .+.+..++..+.. +.+++|.+|.+..
T Consensus 160 G~Pvr~~~~~~-----------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~- 226 (352)
T PRK12446 160 GSPVREEVLKG-----------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNL- 226 (352)
T ss_pred CCcCCcccccc-----------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchH-
Confidence 95544322110 01122222222344569999999998644 2344444544432 4789999887531
Q ss_pred hhhhhhhchhhHHHHhcCCCeeeeccc-c-hHhhhccCCccccccccCchhHHHHHHhCCcEeccCCc-----ccchhhH
Q 044823 324 EELEKWLVEENFEERIKGRGLLIRGWA-P-QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF-----TDQFCNE 396 (497)
Q Consensus 324 ~~~~~~~lp~~~~~~~~~~nv~v~~~~-p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~-----~DQ~~na 396 (497)
.+.. .. ..++.+.+|+ + -..+++++++ +|||||.+|++|++++|+|+|++|+. .||..||
T Consensus 227 --------~~~~-~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na 293 (352)
T PRK12446 227 --------DDSL-QN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNA 293 (352)
T ss_pred --------HHHH-hh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHH
Confidence 1111 11 1355666887 4 4569999998 99999999999999999999999985 4899999
Q ss_pred HHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044823 397 KLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKE 455 (497)
Q Consensus 397 ~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 455 (497)
..++ +.|+|..+... .++++.|.+++.++++|++ .|++++++
T Consensus 294 ~~l~-~~g~~~~l~~~-------------~~~~~~l~~~l~~ll~~~~---~~~~~~~~ 335 (352)
T PRK12446 294 ESFE-RQGYASVLYEE-------------DVTVNSLIKHVEELSHNNE---KYKTALKK 335 (352)
T ss_pred HHHH-HCCCEEEcchh-------------cCCHHHHHHHHHHHHcCHH---HHHHHHHH
Confidence 9995 99999999766 6899999999999998752 45544444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=1.3e-23 Score=205.48 Aligned_cols=306 Identities=18% Similarity=0.195 Sum_probs=192.4
Q ss_pred cEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 8 FHFILLPFL-AQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 8 ~~vl~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
|||+|...+ +.||+...+.||++| |||+|+|++.......+... +....++ ++..... ..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~------~~~~~~~-~~ 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIP------GLGPIQE-NG 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEcc------CceEecc-CC
Confidence 689999888 899999999999999 69999999987443322111 2333332 1111111 00
Q ss_pred CCCchhHHHHHH---HHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhc
Q 044823 87 MLPSIDLAYNFL---TSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSK 163 (497)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~ 163 (497)
............ .........+.+++++ .+||+||+|. .+.+..+|+..|||++.+.....+...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~--------- 129 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHP--------- 129 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccc---------
Confidence 111111121111 1223344455666777 8999999994 455678999999999998765433210
Q ss_pred ccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHh--cccccEEEecchhhhhHHHHHHHHhhcCCce
Q 044823 164 VHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAA--DKKTYGVIINTFEELESASVKEYKNAKQGKV 241 (497)
Q Consensus 164 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~ 241 (497)
...++ . ...+..++.++... ...+...+.-++. .. .....+.
T Consensus 130 ----------~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~ 173 (318)
T PF13528_consen 130 ----------NFWLP---W--------------DQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRV 173 (318)
T ss_pred ----------cCCcc---h--------------hhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccc
Confidence 00000 0 00122222222221 1222223333332 10 1111345
Q ss_pred EEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCC-CCeEEEEeCC
Q 044823 242 WCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASK-KPFIWVSRVG 320 (497)
Q Consensus 242 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~ 320 (497)
.++||+..+.... ... .+++.|+|++|..... .++++++..+ .++++. +..
T Consensus 174 ~~~~p~~~~~~~~-------------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~ 225 (318)
T PF13528_consen 174 PFVGPIIRPEIRE-------------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN 225 (318)
T ss_pred cccCchhcccccc-------------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC
Confidence 6688876432211 101 1234799999987643 6667777766 566655 443
Q ss_pred CchhhhhhhhchhhHHHHhcCCCeeeeccc--chHhhhccCCccccccccCchhHHHHHHhCCcEeccCC--cccchhhH
Q 044823 321 NKLEELEKWLVEENFEERIKGRGLLIRGWA--PQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL--FTDQFCNE 396 (497)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~--pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~--~~DQ~~na 396 (497)
.. -+ ..+|+.+.+|. ...++|+.+++ +|||||+||++|++++|+|+|++|. +.+|..||
T Consensus 226 ~~--------~~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a 288 (318)
T PF13528_consen 226 AA--------DP-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNA 288 (318)
T ss_pred cc--------cc-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHH
Confidence 21 11 26799998876 34679999998 9999999999999999999999999 78999999
Q ss_pred HHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHH
Q 044823 397 KLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINIL 439 (497)
Q Consensus 397 ~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v 439 (497)
+++ +++|+|+.++.+ +++++.|+++|.++
T Consensus 289 ~~l-~~~G~~~~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 289 RKL-EELGLGIVLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred HHH-HHCCCeEEcccc-------------cCCHHHHHHHHhcC
Confidence 999 699999999877 79999999999874
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=1.4e-21 Score=189.48 Aligned_cols=326 Identities=19% Similarity=0.184 Sum_probs=206.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGA-TATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
++|++...++-||+.|.++|+++|.++|+ +|.+..+....+.... ...++.++.++.. ++....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~----~~~~~~---- 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSG----GLRRKG---- 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEecc----cccccC----
Confidence 47899999999999999999999999999 5777766543332211 1235667766531 111110
Q ss_pred CCCchhHHHHHHHHH--HhchHHHHHHHhhcCCCCeEEEECCCC--cchHHHHHHcCCCeEEEechhHHHHHHHHHhhhh
Q 044823 87 MLPSIDLAYNFLTSL--QKLQLPFENLFREQTPQPCCIISDMCI--PWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVS 162 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~ 162 (497)
.+..+...+ .......++++++ .+||+||+-..+ ..+..+|..+|||.+..
T Consensus 66 ------~~~~~~~~~~~~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih----------------- 120 (357)
T COG0707 66 ------SLKLLKAPFKLLKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH----------------- 120 (357)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEEE-----------------
Confidence 011111111 1234466777888 899999985533 46778999999999983
Q ss_pred cccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceE
Q 044823 163 KVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVW 242 (497)
Q Consensus 163 ~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~ 242 (497)
+....||... +++.+. +. .+..+|..... ..-+.+++
T Consensus 121 ----------Eqn~~~G~an-------------------k~~~~~------a~-~V~~~f~~~~~-------~~~~~~~~ 157 (357)
T COG0707 121 ----------EQNAVPGLAN-------------------KILSKF------AK-KVASAFPKLEA-------GVKPENVV 157 (357)
T ss_pred ----------ecCCCcchhH-------------------HHhHHh------hc-eeeeccccccc-------cCCCCceE
Confidence 2344444322 111111 11 12222221110 00123688
Q ss_pred EeC-cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCC-HhhHHHHHHHHHhCCCCeEEEEeCC
Q 044823 243 CIG-PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLT-SSQLIELGLGLEASKKPFIWVSRVG 320 (497)
Q Consensus 243 ~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~ 320 (497)
.+| |+..+.... +..-..+... .++++|+|.-||..... .+.+..+...+.. +..+++.++.+
T Consensus 158 ~tG~Pvr~~~~~~-------------~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~ 222 (357)
T COG0707 158 VTGIPVRPEFEEL-------------PAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN 222 (357)
T ss_pred EecCcccHHhhcc-------------chhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc
Confidence 888 664432210 0111111111 14569999999988633 3333334433333 57888888776
Q ss_pred CchhhhhhhhchhhHHHHhcCCC-eeeecccch-HhhhccCCccccccccCchhHHHHHHhCCcEeccCCc----ccchh
Q 044823 321 NKLEELEKWLVEENFEERIKGRG-LLIRGWAPQ-VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF----TDQFC 394 (497)
Q Consensus 321 ~~~~~~~~~~lp~~~~~~~~~~n-v~v~~~~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~----~DQ~~ 394 (497)
.. . .........+ +.+.+|.++ ..+++.+++ +||++|.+|+.|++++|+|+|.+|.- .||..
T Consensus 223 ~~-~---------~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~ 290 (357)
T COG0707 223 DL-E---------ELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEY 290 (357)
T ss_pred hH-H---------HHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHH
Confidence 41 1 1112222233 788899987 559999999 99999999999999999999999973 37899
Q ss_pred hHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 395 NEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 395 na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
||..+ ++.|.|+.++.. .+|.+++.+.|.+++++++..+.|+++++++.
T Consensus 291 NA~~l-~~~gaa~~i~~~-------------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 291 NAKFL-EKAGAALVIRQS-------------ELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHHHH-HhCCCEEEeccc-------------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999 599999999877 69999999999999998765556666655553
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=8.3e-21 Score=185.24 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=89.6
Q ss_pred eEEEEeeCCcccCCHhhHHHHHHHHHhCCC-CeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccc--hHhhhcc
Q 044823 282 SVVYVCLGSICNLTSSQLIELGLGLEASKK-PFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAP--QVMILSH 358 (497)
Q Consensus 282 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p--q~~lL~~ 358 (497)
+.|+|.+|+... ..++++++..+. .++ ++.... .... .++|+.+.+|.| ...+|+.
T Consensus 189 ~~iLv~~g~~~~------~~l~~~l~~~~~~~~i--~~~~~~--------~~~~-----~~~~v~~~~~~~~~~~~~l~~ 247 (321)
T TIGR00661 189 DYILVYIGFEYR------YKILELLGKIANVKFV--CYSYEV--------AKNS-----YNENVEIRRITTDNFKELIKN 247 (321)
T ss_pred CcEEEECCcCCH------HHHHHHHHhCCCeEEE--EeCCCC--------Cccc-----cCCCEEEEECChHHHHHHHHh
Confidence 468888877432 355677776653 333 222211 1111 146899889997 3567788
Q ss_pred CCccccccccCchhHHHHHHhCCcEeccCCcc--cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHH
Q 044823 359 PAVGGFLTHCGWNSSLEGISAGVQMLTWPLFT--DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAI 436 (497)
Q Consensus 359 ~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai 436 (497)
+++ +|||||.+|++|++++|+|+|++|... ||..||+.++ +.|+|+.++.. ++ ++.+++
T Consensus 248 ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~~l~~~-------------~~---~~~~~~ 308 (321)
T TIGR00661 248 AEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGIALEYK-------------EL---RLLEAI 308 (321)
T ss_pred CCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEEEcChh-------------hH---HHHHHH
Confidence 888 999999999999999999999999965 8999999994 99999999766 34 566677
Q ss_pred HHHhcCC
Q 044823 437 NILMDDG 443 (497)
Q Consensus 437 ~~vl~~~ 443 (497)
.++++|+
T Consensus 309 ~~~~~~~ 315 (321)
T TIGR00661 309 LDIRNMK 315 (321)
T ss_pred Hhccccc
Confidence 7777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.83 E-value=4e-18 Score=169.43 Aligned_cols=329 Identities=16% Similarity=0.110 Sum_probs=194.6
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
+|||+|+..+..||...++.||+.|.++||+|++++.+.... .... ...++.++.++.+ +....
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~-----~~~g~~~~~~~~~----~~~~~----- 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLV-----PKAGIEFHFIPSG----GLRRK----- 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhcc-----ccCCCcEEEEecc----CcCCC-----
Confidence 378999999988999999999999999999999998864211 1110 1125666665421 11100
Q ss_pred CCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCC--CcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcc
Q 044823 87 MLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMC--IPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKV 164 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 164 (497)
.....+.... ........+.+++++ .+||+|++... .+.+..++...++|.+.....
T Consensus 65 --~~~~~l~~~~-~~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~---------------- 123 (357)
T PRK00726 65 --GSLANLKAPF-KLLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN---------------- 123 (357)
T ss_pred --ChHHHHHHHH-HHHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC----------------
Confidence 0011111111 112334456677777 89999999863 234556788889999863100
Q ss_pred cCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEEe
Q 044823 165 HENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWCI 244 (497)
Q Consensus 165 ~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~v 244 (497)
..|+ ...+++. +.++.++..+-..+ . ..-+.++..+
T Consensus 124 -----------~~~~-------------------~~~r~~~------~~~d~ii~~~~~~~-----~---~~~~~~i~vi 159 (357)
T PRK00726 124 -----------AVPG-------------------LANKLLA------RFAKKVATAFPGAF-----P---EFFKPKAVVT 159 (357)
T ss_pred -----------CCcc-------------------HHHHHHH------HHhchheECchhhh-----h---ccCCCCEEEE
Confidence 0000 0011111 12233333322111 0 0224678889
Q ss_pred CcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCC--CeEEEEeCCCc
Q 044823 245 GPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKK--PFIWVSRVGNK 322 (497)
Q Consensus 245 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~ 322 (497)
|+......... .... ..+ ...+..++|++..|+... ......+.+++..... .++|.+|.+..
T Consensus 160 ~n~v~~~~~~~-----------~~~~-~~~-~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~ 224 (357)
T PRK00726 160 GNPVREEILAL-----------AAPP-ARL-AGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL 224 (357)
T ss_pred CCCCChHhhcc-----------cchh-hhc-cCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH
Confidence 86543321100 0000 111 111233467665555432 1222233355554433 45566666542
Q ss_pred hhhhhhhhchhhHHHHhcCCCeeeecccc-hHhhhccCCccccccccCchhHHHHHHhCCcEeccCC----cccchhhHH
Q 044823 323 LEELEKWLVEENFEERIKGRGLLIRGWAP-QVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL----FTDQFCNEK 397 (497)
Q Consensus 323 ~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~ 397 (497)
+. +.... + ..-++.+.+|+. ...+++.+++ +|+|+|.++++||+++|+|+|++|. .++|..|+.
T Consensus 225 ~~------~~~~~-~--~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 293 (357)
T PRK00726 225 EE------VRAAY-A--AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANAR 293 (357)
T ss_pred HH------HHHHh-h--cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHH
Confidence 11 11111 1 122378889984 4689999999 9999999999999999999999997 368999999
Q ss_pred HHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 398 LIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 398 ~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
.+. +.|.|..+..+ .+++++|.++|.++++|++..+.++++++++
T Consensus 294 ~i~-~~~~g~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 294 ALV-DAGAALLIPQS-------------DLTPEKLAEKLLELLSDPERLEAMAEAARAL 338 (357)
T ss_pred HHH-HCCCEEEEEcc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 995 99999999876 5789999999999999875555555554443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=1.1e-16 Score=158.72 Aligned_cols=330 Identities=18% Similarity=0.161 Sum_probs=195.5
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCC
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDML 88 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (497)
||++...++-||+...+.||+.|.++||+|++++...... .... ...++++..++.. +....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~--~~~~-----~~~~~~~~~~~~~----~~~~~------- 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE--ARLV-----PKAGIPLHTIPVG----GLRRK------- 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch--hhcc-----cccCCceEEEEec----CcCCC-------
Confidence 5889999999999999999999999999999998763211 1111 1124666666531 11110
Q ss_pred CchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCC--CcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccC
Q 044823 89 PSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMC--IPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHE 166 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
.....+...+. .......+.+++++ .+||+|++... ...+..+|...|+|++.....
T Consensus 63 ~~~~~~~~~~~-~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------ 121 (350)
T cd03785 63 GSLKKLKAPFK-LLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------ 121 (350)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------
Confidence 00111111111 12233456677777 89999998753 345667888899998862100
Q ss_pred CCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEEeCc
Q 044823 167 NVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWCIGP 246 (497)
Q Consensus 167 ~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp 246 (497)
..|++ ...++ .+.++.++..+-...+ + ..+.++..+|.
T Consensus 122 ---------~~~~~-------------------~~~~~------~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n 159 (350)
T cd03785 122 ---------AVPGL-------------------ANRLL------ARFADRVALSFPETAK-----Y---FPKDKAVVTGN 159 (350)
T ss_pred ---------CCccH-------------------HHHHH------HHhhCEEEEcchhhhh-----c---CCCCcEEEECC
Confidence 00000 00111 1124455554432211 0 11357788886
Q ss_pred CcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCC-HhhHHHHHHHHHhCCCCeEEEEeCCCchhh
Q 044823 247 VSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLT-SSQLIELGLGLEASKKPFIWVSRVGNKLEE 325 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 325 (497)
........ ..+. ...+...+++++|++..|+..... .+.+..+++.+...+..+++..+.+ ..+.
T Consensus 160 ~v~~~~~~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~~ 225 (350)
T cd03785 160 PVREEILA------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-DLEE 225 (350)
T ss_pred CCchHHhh------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-cHHH
Confidence 53321100 0011 222222233446666666654321 1222333444443344556666655 2111
Q ss_pred hhhhhchhhHHHHhcCCCeeeeccc-chHhhhccCCccccccccCchhHHHHHHhCCcEeccCCc----ccchhhHHHHH
Q 044823 326 LEKWLVEENFEERIKGRGLLIRGWA-PQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF----TDQFCNEKLIV 400 (497)
Q Consensus 326 ~~~~~lp~~~~~~~~~~nv~v~~~~-pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~----~DQ~~na~~~~ 400 (497)
+.+.. +.. .+|+.+.+|+ +...+|+.+++ +|+++|.+++.||+.+|+|+|+.|.. .+|..|+..+.
T Consensus 226 -----l~~~~-~~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~ 296 (350)
T cd03785 226 -----VKKAY-EEL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV 296 (350)
T ss_pred -----HHHHH-hcc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH
Confidence 21111 111 4689999998 44679999998 99999999999999999999999863 57888999995
Q ss_pred HHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 401 EVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 401 e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
+.|.|..++.. ..+.+++.++|.++++|++..+.+++++++.
T Consensus 297 -~~g~g~~v~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 297 -KAGAAVLIPQE-------------ELTPERLAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred -hCCCEEEEecC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 89999999765 4689999999999998875555555555443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.70 E-value=8.8e-15 Score=144.93 Aligned_cols=322 Identities=16% Similarity=0.119 Sum_probs=177.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDM 87 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 87 (497)
|||+|++.+..||+...+.||++|.++||+|++++.+.... .... ...++.++.++.. . ....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~-------~-~~~~-- 63 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVG-------G-LRRK-- 63 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEecc-------C-cCCC--
Confidence 48999999999999988899999999999999998653211 0110 1135666665421 1 0000
Q ss_pred CCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCC--cchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhccc
Q 044823 88 LPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCI--PWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVH 165 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
.....+...... ......+.+++++ .+||+|++.... ..+..++..+++|.+.... .
T Consensus 64 -~~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~---------------- 122 (348)
T TIGR01133 64 -GSFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-N---------------- 122 (348)
T ss_pred -ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-C----------------
Confidence 000111111111 2233456677888 899999987633 3455578888999874210 0
Q ss_pred CCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEEeC
Q 044823 166 ENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWCIG 245 (497)
Q Consensus 166 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vG 245 (497)
. .+. ....++. +.++.+++.+-..-+ .+ ....+|
T Consensus 123 ----------~---~~~----------------~~~~~~~------~~~d~ii~~~~~~~~---------~~--~~~~i~ 156 (348)
T TIGR01133 123 ----------A---VPG----------------LTNKLLS------RFAKKVLISFPGAKD---------HF--EAVLVG 156 (348)
T ss_pred ----------C---Ccc----------------HHHHHHH------HHhCeeEECchhHhh---------cC--CceEEc
Confidence 0 000 0011111 224445443322111 01 225566
Q ss_pred cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHH---hCCCCeEEEEeCCCc
Q 044823 246 PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE---ASKKPFIWVSRVGNK 322 (497)
Q Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~ 322 (497)
.-+....... +.. .+.+.-.+++++|.+..|+... ......+.++++ ..+.++++..+....
T Consensus 157 n~v~~~~~~~------------~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~ 221 (348)
T TIGR01133 157 NPVRQEIRSL------------PVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKNDL 221 (348)
T ss_pred CCcCHHHhcc------------cch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcchH
Confidence 3322111000 000 1122212233355444455442 222222334443 334566654444321
Q ss_pred hhhhhhhhchhhHHHHhcCCCe-eeeccc--chHhhhccCCccccccccCchhHHHHHHhCCcEeccCCc---ccchhhH
Q 044823 323 LEELEKWLVEENFEERIKGRGL-LIRGWA--PQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF---TDQFCNE 396 (497)
Q Consensus 323 ~~~~~~~~lp~~~~~~~~~~nv-~v~~~~--pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~---~DQ~~na 396 (497)
. .+.......++ .++.|. +-..+|+.+++ +|+++|.++++||+++|+|+|++|.. .+|..|+
T Consensus 222 -~---------~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 289 (348)
T TIGR01133 222 -E---------KVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNA 289 (348)
T ss_pred -H---------HHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHH
Confidence 1 11111111111 122233 45778999998 99999988999999999999999873 4678899
Q ss_pred HHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044823 397 KLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAK 454 (497)
Q Consensus 397 ~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 454 (497)
..+ +..|.|..++.. ..++++|.+++.++++|++..+.+.++++
T Consensus 290 ~~i-~~~~~G~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 290 KFL-EDLGAGLVIRQK-------------ELLPEKLLEALLKLLLDPANLEAMAEAAR 333 (348)
T ss_pred HHH-HHCCCEEEEecc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 899 499999988765 46899999999999998744444444443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.66 E-value=1.6e-14 Score=144.04 Aligned_cols=351 Identities=13% Similarity=0.049 Sum_probs=197.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDM 87 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 87 (497)
+||+|...++-||+.|. +|+++|.++|++|+|+..... .+++... ...+.+..++. .|+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~v----~G~~-------- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELSV----MGLR-------- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhhh----ccHH--------
Confidence 58999999999999999 999999999999999975521 2333210 00122222211 0110
Q ss_pred CCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEE-CCCCcc--hHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcc
Q 044823 88 LPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIIS-DMCIPW--TVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKV 164 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~-D~~~~~--a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 164 (497)
..+..+. ..........+++++ .+||+||. |.-+.. ....|+.+|||.+.+.+ |- ..
T Consensus 66 ----~~l~~~~-~~~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~-~w----------- 125 (385)
T TIGR00215 66 ----EVLGRLG-RLLKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQ-VW----------- 125 (385)
T ss_pred ----HHHHHHH-HHHHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-Cc-Hh-----------
Confidence 1111111 122334467777888 89999884 643333 33388999999987421 00 00
Q ss_pred cCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEEe
Q 044823 165 HENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWCI 244 (497)
Q Consensus 165 ~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~v 244 (497)
.+.. . ..+.+.+. ++.++.. ++ .+..+ +.. .+.+..+|
T Consensus 126 --------------aw~~------~----------~~r~l~~~------~d~v~~~-~~-~e~~~---~~~-~g~~~~~v 163 (385)
T TIGR00215 126 --------------AWRK------W----------RAKKIEKA------TDFLLAI-LP-FEKAF---YQK-KNVPCRFV 163 (385)
T ss_pred --------------hcCc------c----------hHHHHHHH------HhHhhcc-CC-CcHHH---HHh-cCCCEEEE
Confidence 0000 0 01122222 1222221 11 12222 221 23466789
Q ss_pred C-cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhC-----CCCeEEEEe
Q 044823 245 G-PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS-----KKPFIWVSR 318 (497)
Q Consensus 245 G-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 318 (497)
| |+........ ....+..+-+.-.+++++|.+-.||....-......++++++.. +.++++...
T Consensus 164 GnPv~~~~~~~~----------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 164 GHPLLDAIPLYK----------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred CCchhhhccccC----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 9 4422111000 01122222222223456788877876642233344555554432 334555443
Q ss_pred CCCchhhhhhhhchhhHHHHhc-CCCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEecc----CCcc---
Q 044823 319 VGNKLEELEKWLVEENFEERIK-GRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW----PLFT--- 390 (497)
Q Consensus 319 ~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~----P~~~--- 390 (497)
......... .+..... ...+.+..+ +...+++.+++ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 234 ~~~~~~~~~------~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~ 303 (385)
T TIGR00215 234 NFKRRLQFE------QIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIA 303 (385)
T ss_pred CchhHHHHH------HHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHH
Confidence 322111111 1111111 123333222 33568999998 9999999887 999999999999 7642
Q ss_pred ------cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCC----hhhHHHHHHHHHHHHHH
Q 044823 391 ------DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDG----EERDGRRRRAKEFGELA 460 (497)
Q Consensus 391 ------DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~----~~~~~~~~~a~~~~~~~ 460 (497)
+|..|+..++ ..++...+-.+ .+|++.|.+.+.++|+|+ +..+.+++..+++++.+
T Consensus 304 ~~~~~~~~~~~~nil~-~~~~~pel~q~-------------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 369 (385)
T TIGR00215 304 RRLVKTDYISLPNILA-NRLLVPELLQE-------------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI 369 (385)
T ss_pred HHHHcCCeeeccHHhc-CCccchhhcCC-------------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 2788999996 99998888655 699999999999999998 88888888888887775
Q ss_pred HHHHhhCCChHHHHHHHH
Q 044823 461 KRALEEGGSSYNNIKFFH 478 (497)
Q Consensus 461 ~~~~~~~g~~~~~~~~~~ 478 (497)
.++|.+.+.++.++
T Consensus 370 ----~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 370 ----YCNADSERAAQAVL 383 (385)
T ss_pred ----cCCCHHHHHHHHHh
Confidence 34566666555443
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.63 E-value=2.5e-14 Score=136.06 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=78.4
Q ss_pred eEEEEeeCCcccCCHhhHHHHHHHHHhC--CCCeEEEEeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccchH-hhhc
Q 044823 282 SVVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWVSRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQV-MILS 357 (497)
Q Consensus 282 ~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~-~lL~ 357 (497)
+.|+|+||...... ....+++++... +.++.+++|.... ..+.+.... ..+|+.+..|+++. .+|+
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm~ 240 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP--------NLDELKKFAKEYPNIILFIDVENMAELMN 240 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc--------CHHHHHHHHHhCCCEEEEeCHHHHHHHHH
Confidence 46899999766432 445666777653 5577888877543 111222221 24689999999985 7999
Q ss_pred cCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHH
Q 044823 358 HPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKL 398 (497)
Q Consensus 358 ~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 398 (497)
.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 241 ~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 241 EADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999 999999 9999999999999999999999999875
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=2.3e-13 Score=136.48 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=102.5
Q ss_pred CCeEEEEeeCCcccCCHhhHHHHHHHHHhC-CCCeEEEEeCCCchhhhhhhhchhhHHHHh--cCCCeeeecccch-Hhh
Q 044823 280 PSSVVYVCLGSICNLTSSQLIELGLGLEAS-KKPFIWVSRVGNKLEELEKWLVEENFEERI--KGRGLLIRGWAPQ-VMI 355 (497)
Q Consensus 280 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq-~~l 355 (497)
++++|++..|+.... ..+..+++++... +.++++..+.+.. +-+.+.+.. .++|+.+.+|+++ ..+
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 345777777776532 2345667777643 5677777664321 111222211 1358999999987 479
Q ss_pred hccCCccccccccCchhHHHHHHhCCcEecc-CCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHH
Q 044823 356 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTW-PLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVET 434 (497)
Q Consensus 356 L~~~~~~~~ItHgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (497)
++.+++ +|+.+|..++.||+++|+|+|+. |..+.+..|+..+ ++.|+|+.. . +.+++.+
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~--~---------------~~~~l~~ 330 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI--R---------------DDEEVFA 330 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE--C---------------CHHHHHH
Confidence 999998 99999988899999999999985 6677778899999 588988754 2 5688999
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 044823 435 AINILMDDGEERDGRRRRAKE 455 (497)
Q Consensus 435 ai~~vl~~~~~~~~~~~~a~~ 455 (497)
+|.++++|++..+.+++++++
T Consensus 331 ~i~~ll~~~~~~~~m~~~~~~ 351 (380)
T PRK13609 331 KTEALLQDDMKLLQMKEAMKS 351 (380)
T ss_pred HHHHHHCCHHHHHHHHHHHHH
Confidence 999999987555555555444
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.61 E-value=1.3e-13 Score=138.33 Aligned_cols=179 Identities=11% Similarity=0.130 Sum_probs=122.4
Q ss_pred CCeEEEEeeCCcccCCHhhHHHHHHHHH-h-CCCCeEEEEeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccch-Hhh
Q 044823 280 PSSVVYVCLGSICNLTSSQLIELGLGLE-A-SKKPFIWVSRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQ-VMI 355 (497)
Q Consensus 280 ~~~vv~vs~GS~~~~~~~~~~~~~~al~-~-~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq-~~l 355 (497)
++++|+++.|+... ...+..+++++. . .+.++++..+.+.. +-+.+.+.. ..+++.+.+|.++ ..+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~--------l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE--------LKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH--------HHHHHHHHhccCCCeEEEeccchHHHH
Confidence 34578888888763 133445555543 2 24567666654421 111222222 2458889999976 469
Q ss_pred hccCCccccccccCchhHHHHHHhCCcEecc-CCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHH
Q 044823 356 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTW-PLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVET 434 (497)
Q Consensus 356 L~~~~~~~~ItHgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (497)
++.+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+... +.+++.+
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~-----------------~~~~l~~ 330 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD-----------------TPEEAIK 330 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC-----------------CHHHHHH
Confidence 999999 99988888999999999999998 6666677899999 5999998642 6778999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccCccCCcccccC
Q 044823 435 AINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYHATADLRSDVNVVPL 496 (497)
Q Consensus 435 ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (497)
+|.++++|++..+.+++|+++++. ..+....++.+++.+......+..+--||+
T Consensus 331 ~i~~ll~~~~~~~~m~~~~~~~~~--------~~s~~~i~~~l~~l~~~~~~~~~~~~~~~~ 384 (391)
T PRK13608 331 IVASLTNGNEQLTNMISTMEQDKI--------KYATQTICRDLLDLIGHSSQPQEIYGKVPL 384 (391)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHhhhhhhhhhhhccccH
Confidence 999999887555555555554432 344456666666666666666776666664
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.60 E-value=2.1e-13 Score=136.74 Aligned_cols=351 Identities=15% Similarity=0.054 Sum_probs=177.9
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
+|||+|+..++.||+.|.+ ++++|.++++++.++..... .+++.. ....+.++.++. .
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~~---------~----- 58 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG-----CESLFDMEELAV---------M----- 58 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC-----CccccCHHHhhh---------c-----
Confidence 4689999999999999999 99999999888888865421 222211 001122222110 0
Q ss_pred CCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCC-Ccch--HHHHHHcCCCeEEEechhHHHHHHHHHhhhhc
Q 044823 87 MLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMC-IPWT--VDTAAKFNVPRIIFHGFSCFCLLCLDILRVSK 163 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~-~~~a--~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~ 163 (497)
.....+..+ .........+.+++++ .+||+|++-.+ ..+. ...|.+.|||.+.+.... .
T Consensus 59 --g~~~~~~~~-~~~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~--~----------- 120 (380)
T PRK00025 59 --GLVEVLPRL-PRLLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS--V----------- 120 (380)
T ss_pred --cHHHHHHHH-HHHHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--h-----------
Confidence 000111111 1122344567777888 89999876322 2333 334778899988642110 0
Q ss_pred ccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEE
Q 044823 164 VHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWC 243 (497)
Q Consensus 164 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 243 (497)
+...+ ....++ .+.++.+++.+-. .... +.. .+.++.+
T Consensus 121 ------------------------~~~~~---------~~~~~~---~~~~d~i~~~~~~--~~~~---~~~-~g~~~~~ 158 (380)
T PRK00025 121 ------------------------WAWRQ---------GRAFKI---AKATDHVLALFPF--EAAF---YDK-LGVPVTF 158 (380)
T ss_pred ------------------------hhcCc---------hHHHHH---HHHHhhheeCCcc--CHHH---HHh-cCCCeEE
Confidence 00000 001111 1223334443321 1111 111 2234778
Q ss_pred eC-cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHh-----CCCCeEEEE
Q 044823 244 IG-PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA-----SKKPFIWVS 317 (497)
Q Consensus 244 vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~ 317 (497)
+| |+........ ...+....+.-.+++++|++..||...........++++++. .+.+++|..
T Consensus 159 ~G~p~~~~~~~~~-----------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~ 227 (380)
T PRK00025 159 VGHPLADAIPLLP-----------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPL 227 (380)
T ss_pred ECcCHHHhccccc-----------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 88 4322111000 012222223222234466666665443212223444554432 234677765
Q ss_pred eCCCchhhhhhhhchhhHHHHhcC---CCeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccch-
Q 044823 318 RVGNKLEELEKWLVEENFEERIKG---RGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQF- 393 (497)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~---~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~- 393 (497)
+.+.... .+.+.... -++.+.. -.-..+++.+++ +|+-+|.+++ |++++|+|+|+.|...-.+
T Consensus 228 ~~~~~~~---------~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~ 294 (380)
T PRK00025 228 VNPKRRE---------QIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTF 294 (380)
T ss_pred CChhhHH---------HHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHH
Confidence 4222111 12221111 1333322 123568899998 9999998887 9999999999996543222
Q ss_pred hhH------------HHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 044823 394 CNE------------KLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAK 461 (497)
Q Consensus 394 ~na------------~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~ 461 (497)
..+ ..++ ..+++..+... ..+++++.+++.++++|++..+.++++++.+...+
T Consensus 295 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~- 359 (380)
T PRK00025 295 WIAKRLVKVPYVSLPNLLA-GRELVPELLQE-------------EATPEKLARALLPLLADGARRQALLEGFTELHQQL- 359 (380)
T ss_pred HHHHHHHcCCeeehHHHhc-CCCcchhhcCC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-
Confidence 122 2221 22222223222 47899999999999999876777777776666553
Q ss_pred HHHhhCCChHHHHHHHHHHHhh
Q 044823 462 RALEEGGSSYNNIKFFHPRYHA 483 (497)
Q Consensus 462 ~~~~~~g~~~~~~~~~~~~~~~ 483 (497)
..|++ ..+.+.|.++..
T Consensus 360 ----~~~a~-~~~~~~i~~~~~ 376 (380)
T PRK00025 360 ----RCGAD-ERAAQAVLELLK 376 (380)
T ss_pred ----CCCHH-HHHHHHHHHHhh
Confidence 23433 444455555443
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.56 E-value=2.2e-13 Score=126.23 Aligned_cols=336 Identities=15% Similarity=0.127 Sum_probs=193.8
Q ss_pred CCCcEEEEecCC--CcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCC
Q 044823 5 TSNFHFILLPFL--AQGHLIPMFDIARLLAQH--GATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPE 80 (497)
Q Consensus 5 ~~~~~vl~~~~p--~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 80 (497)
++++||+|++.- +.||+..++.+|++|.+. |.+|++++.......|. ...++.++.+|-=... ..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LPsl~k~---~~ 75 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLPSLIKG---DN 75 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecCceEec---CC
Confidence 456799999987 689999999999999998 99999998864443332 2247899888621111 11
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhh
Q 044823 81 GCENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILR 160 (497)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~ 160 (497)
+.....+... + ...+ ...-...+....+. .+||++|+|.+-++ . .-+.+ | ...++.
T Consensus 76 G~~~~~d~~~-~-l~e~---~~~Rs~lil~t~~~--fkPDi~IVd~~P~G-l-r~EL~--p-------------tL~yl~ 131 (400)
T COG4671 76 GEYGLVDLDG-D-LEET---KKLRSQLILSTAET--FKPDIFIVDKFPFG-L-RFELL--P-------------TLEYLK 131 (400)
T ss_pred CceeeeecCC-C-HHHH---HHHHHHHHHHHHHh--cCCCEEEEeccccc-h-hhhhh--H-------------HHHHHh
Confidence 1111111111 1 1111 11122334445555 89999999976443 1 11110 0 000000
Q ss_pred hhcccCCCCCCCccccCCCCCCCcccccccCCCCCCCc----hHHHHHHHHHHhcccccEEEecchhhhhHH--HHHHHH
Q 044823 161 VSKVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTD----ELKEFNEKILAADKKTYGVIINTFEELESA--SVKEYK 234 (497)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~--~~~~~~ 234 (497)
. ..+..+-++ ...++.+...... .......+++ +.+++..-+.+..+ .++ +.
T Consensus 132 ~----------~~t~~vL~l-----r~i~D~p~~~~~~w~~~~~~~~I~r~y------D~V~v~GdP~f~d~~~~~~-~~ 189 (400)
T COG4671 132 T----------TGTRLVLGL-----RSIRDIPQELEADWRRAETVRLINRFY------DLVLVYGDPDFYDPLTEFP-FA 189 (400)
T ss_pred h----------cCCcceeeh-----HhhhhchhhhccchhhhHHHHHHHHhh------eEEEEecCccccChhhcCC-cc
Confidence 0 000000011 1222333222111 1112222221 23444332222110 111 11
Q ss_pred hhcCCceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHh-CCCC-
Q 044823 235 NAKQGKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA-SKKP- 312 (497)
Q Consensus 235 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~-~~~~- 312 (497)
.....++.++|-+..+.+... .+ +... +++-.|+||-|.... ..+.+...++|-.. .+.+
T Consensus 190 ~~i~~k~~ytG~vq~~~~~~~------------~p----~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~ 251 (400)
T COG4671 190 PAIRAKMRYTGFVQRSLPHLP------------LP----PHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNH 251 (400)
T ss_pred HhhhhheeEeEEeeccCcCCC------------CC----CcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCc
Confidence 222367899998822211110 00 1111 222368899886653 45666666666553 4444
Q ss_pred -eEEEEeCCCchhhhhhhhchhhHHHHh-----cCCCeeeecccch-HhhhccCCccccccccCchhHHHHHHhCCcEec
Q 044823 313 -FIWVSRVGNKLEELEKWLVEENFEERI-----KGRGLLIRGWAPQ-VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLT 385 (497)
Q Consensus 313 -~i~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~v~~~~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~ 385 (497)
.+..+|.. +|+....+. +.+++.+..|-.+ ..+++-++. +|+-||+||++|-|.+|+|.|+
T Consensus 252 ~~~ivtGP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLi 319 (400)
T COG4671 252 KWLIVTGPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALI 319 (400)
T ss_pred ceEEEeCCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEE
Confidence 56666654 554332222 2478999999876 669988888 9999999999999999999999
Q ss_pred cCCcc---cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhc
Q 044823 386 WPLFT---DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMD 441 (497)
Q Consensus 386 ~P~~~---DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 441 (497)
+|... +|-.-|.|+ +++|+.-.+..+ .++++.+++++...++
T Consensus 320 vPr~~p~eEQliRA~Rl-~~LGL~dvL~pe-------------~lt~~~La~al~~~l~ 364 (400)
T COG4671 320 VPRAAPREEQLIRAQRL-EELGLVDVLLPE-------------NLTPQNLADALKAALA 364 (400)
T ss_pred eccCCCcHHHHHHHHHH-HhcCcceeeCcc-------------cCChHHHHHHHHhccc
Confidence 99854 899999999 599999999877 7999999999999887
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.49 E-value=1.5e-15 Score=133.66 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=98.9
Q ss_pred EEEEeeCCcccCC-HhhHHHHHHHHHh--CCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccc-hHhhhcc
Q 044823 283 VVYVCLGSICNLT-SSQLIELGLGLEA--SKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAP-QVMILSH 358 (497)
Q Consensus 283 vv~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q~~lL~~ 358 (497)
+|+|+.||..... .+.+..+...+.. ...++++.+|...... ....+. ....|+.+.+|.+ ...+++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~------~~~~~~--~~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE------LKIKVE--NFNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH------HCCCHC--CTTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH------HHHHHh--ccCCcEEEEechhhHHHHHHH
Confidence 5899999877531 1222233333332 3678999998873221 111110 0025889999999 6889999
Q ss_pred CCccccccccCchhHHHHHHhCCcEeccCCcc----cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHH
Q 044823 359 PAVGGFLTHCGWNSSLEGISAGVQMLTWPLFT----DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVET 434 (497)
Q Consensus 359 ~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~----DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (497)
+++ +|||||.||++|++.+|+|+|++|... +|..||..++ +.|+|..+... ..+.+.|.+
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~-------------~~~~~~L~~ 136 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDES-------------ELNPEELAE 136 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECC-------------C-SCCCHHH
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCcc-------------cCCHHHHHH
Confidence 999 999999999999999999999999988 9999999995 99999999876 577999999
Q ss_pred HHHHHhcCC
Q 044823 435 AINILMDDG 443 (497)
Q Consensus 435 ai~~vl~~~ 443 (497)
+|.++++++
T Consensus 137 ~i~~l~~~~ 145 (167)
T PF04101_consen 137 AIEELLSDP 145 (167)
T ss_dssp HHHCHCCCH
T ss_pred HHHHHHcCc
Confidence 999999875
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=1.7e-11 Score=122.81 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=96.7
Q ss_pred CCCeEEEEeeCCcccCCHhhHHHHHHHHHh---------CCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecc
Q 044823 279 QPSSVVYVCLGSICNLTSSQLIELGLGLEA---------SKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGW 349 (497)
Q Consensus 279 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~ 349 (497)
+++++|++..|+..... +..+++++.. .+.++++..|.+.. +-+.+.......++.+.+|
T Consensus 204 ~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v~~~G~ 272 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPVKVRGF 272 (382)
T ss_pred CCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCeEEEec
Confidence 34457777666554332 2333333332 33556777765421 1112222112357888899
Q ss_pred cch-HhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccch-hhHHHHHHHHcceeEecccccccccccccccccc
Q 044823 350 APQ-VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQF-CNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLV 427 (497)
Q Consensus 350 ~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~-~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~ 427 (497)
+++ ..+++.+++ +|+.+|-+|++||+++|+|+|+.+....|. .|+..+. +.|.|+.. .
T Consensus 273 ~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~--~--------------- 332 (382)
T PLN02605 273 VTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS--E--------------- 332 (382)
T ss_pred cccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec--C---------------
Confidence 986 569999999 999999999999999999999998777775 6898895 89998754 3
Q ss_pred CHHHHHHHHHHHhcC-ChhhHHHHHHH
Q 044823 428 KKEDVETAINILMDD-GEERDGRRRRA 453 (497)
Q Consensus 428 ~~~~l~~ai~~vl~~-~~~~~~~~~~a 453 (497)
+++++.++|.++++| ++..+.+++++
T Consensus 333 ~~~~la~~i~~ll~~~~~~~~~m~~~~ 359 (382)
T PLN02605 333 SPKEIARIVAEWFGDKSDELEAMSENA 359 (382)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788999999999987 53333333333
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.36 E-value=6.5e-10 Score=111.13 Aligned_cols=142 Identities=18% Similarity=0.095 Sum_probs=90.3
Q ss_pred CeEEEEeeCCcccCCHhhHHHHHHHHHhC----CCCeEEEEeCCCchhhhhhhhchh-hHHH---------HhcCCCeee
Q 044823 281 SSVVYVCLGSICNLTSSQLIELGLGLEAS----KKPFIWVSRVGNKLEELEKWLVEE-NFEE---------RIKGRGLLI 346 (497)
Q Consensus 281 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~-~~~~---------~~~~~nv~v 346 (497)
+++|.+--||-.......+..++++++.. +..|++.+.+.......... +.+ +... ....+++.+
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~v 283 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAI-LEDLGWQLEGSSEDQTSLFQKGTLEV 283 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHH-HHhcCceecCCccccchhhccCceEE
Confidence 34788888887553333344555555543 56788887444322211110 000 0000 000123555
Q ss_pred ecccch-HhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHH----cceeEecccccccccccc
Q 044823 347 RGWAPQ-VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVL----RIGVSVGVEVPMKFGEEE 421 (497)
Q Consensus 347 ~~~~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~----G~G~~l~~~~~~~~~~~~ 421 (497)
..+..+ ..+++.+++ +|+-.|..| .|++..|+|+|++|.-..|. ||... ++. |.++.+..
T Consensus 284 ~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~~---------- 348 (396)
T TIGR03492 284 LLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLAS---------- 348 (396)
T ss_pred EechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecCC----------
Confidence 555544 669999999 999999766 99999999999999766665 98777 354 76666643
Q ss_pred ccccccCHHHHHHHHHHHhcCC
Q 044823 422 KIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 422 ~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
.+.+.|.+++.++++|+
T Consensus 349 -----~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 349 -----KNPEQAAQVVRQLLADP 365 (396)
T ss_pred -----CCHHHHHHHHHHHHcCH
Confidence 35589999999999886
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.32 E-value=3.4e-09 Score=109.15 Aligned_cols=141 Identities=18% Similarity=0.136 Sum_probs=92.6
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhC-CCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchH---hhhcc
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEAS-KKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQV---MILSH 358 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~lL~~ 358 (497)
.+++..|+... ...+..++++++.. +.++++ .|.+... +.+.......++.+.+|+++. .+++.
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i-vG~G~~~---------~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAF-VGDGPYR---------EELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-EeCChHH---------HHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 34555677653 33455677777765 445554 4433211 223333335689999999754 37888
Q ss_pred CCcccccccc---C-chhHHHHHHhCCcEeccCCcccchhhHHHHHHH---HcceeEeccccccccccccccccccCHHH
Q 044823 359 PAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEV---LRIGVSVGVEVPMKFGEEEKIGVLVKKED 431 (497)
Q Consensus 359 ~~~~~~ItHg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~---~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (497)
+++ ||.-. | -.++.||+++|+|+|+.... .....+ +. -+.|...+.. +.++
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~---------------d~~~ 389 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG---------------DVDD 389 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC---------------CHHH
Confidence 888 77432 3 24788999999999986543 334455 35 6778888655 7899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 432 VETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 432 l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
+.++|.++++|++..+.+.+++++..
T Consensus 390 la~~i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 390 CVEKLETLLADPELRERMGAAAREEV 415 (465)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999998866667777776644
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.31 E-value=1e-12 Score=111.75 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=77.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCC
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLP 89 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (497)
|+|++.|+.||++|+++||++|++|||+|++++++...+.+++. ++.|..++.+ ..++...... .
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~---~~~~~~~~~~---~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD---SRLPRSLEPL---A 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC---GGGGHHHHHH---H
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC---cCcCcccchh---h
Confidence 78999999999999999999999999999999999555444332 8999987632 0000000000 0
Q ss_pred chhHHHHHHHHHHhchHHHHHHHhhc------CCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHH
Q 044823 90 SIDLAYNFLTSLQKLQLPFENLFREQ------TPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCF 151 (497)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~ 151 (497)
..................+.+...+. ....|+++++.....+..+|+++|||++.....+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 00001111111222223333322221 146788888888888999999999999997766543
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.28 E-value=7.3e-09 Score=102.58 Aligned_cols=141 Identities=17% Similarity=0.167 Sum_probs=91.9
Q ss_pred EEEEeeCCccc-CCHhhHHHHHHHHHhC-CCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHh---hhc
Q 044823 283 VVYVCLGSICN-LTSSQLIELGLGLEAS-KKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVM---ILS 357 (497)
Q Consensus 283 vv~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---lL~ 357 (497)
.+++..|+... ...+.+..+++.+... +..+++. |.+... ..+. ...+|+.+.+|+++.. +++
T Consensus 198 ~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~~~---------~~~~--~~~~~v~~~g~~~~~~~~~~~~ 265 (364)
T cd03814 198 PVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV-GDGPAR---------ARLE--ARYPNVHFLGFLDGEELAAAYA 265 (364)
T ss_pred eEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE-eCCchH---------HHHh--ccCCcEEEEeccCHHHHHHHHH
Confidence 46667777553 2233444444444332 3444444 333211 1111 2357899999998754 788
Q ss_pred cCCccccccccC----chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHH
Q 044823 358 HPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVE 433 (497)
Q Consensus 358 ~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 433 (497)
.+++ +|+.+. -++++||+++|+|+|+.+.. .+...+ +..+.|...... +.+++.
T Consensus 266 ~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~~---------------~~~~l~ 323 (364)
T cd03814 266 SADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEPG---------------DAEAFA 323 (364)
T ss_pred hCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCCC---------------CHHHHH
Confidence 8888 886654 36899999999999987654 355667 477888887654 778899
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHH
Q 044823 434 TAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 434 ~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
++|.++++|++..+.+.+++++..
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 324 AALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999866666666665544
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.22 E-value=1.2e-08 Score=101.61 Aligned_cols=148 Identities=23% Similarity=0.224 Sum_probs=91.6
Q ss_pred eEEEEeeCCccc-CCHhhHHHHHHHHHhC-CCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHh---hh
Q 044823 282 SVVYVCLGSICN-LTSSQLIELGLGLEAS-KKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVM---IL 356 (497)
Q Consensus 282 ~vv~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---lL 356 (497)
+.+++..|+... ...+.+...+..+... +.++++. |.+..... +. ........+|+.+.+++++.. ++
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~~~~-----~~-~~~~~~~~~~v~~~g~~~~~~~~~~~ 292 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGPEKEE-----LK-ELAKALGLDNVTFLGRVPKEELPELL 292 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcccHHH-----HH-HHHHHcCCCcEEEeCCCChHHHHHHH
Confidence 356777787664 2233444444444333 4454443 33322111 11 111123457899999998654 67
Q ss_pred ccCCccccccccC---------chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccccccccccccccc
Q 044823 357 SHPAVGGFLTHCG---------WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLV 427 (497)
Q Consensus 357 ~~~~~~~~ItHgG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~ 427 (497)
..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|...+..
T Consensus 293 ~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~~--------------- 350 (394)
T cd03794 293 AAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPPG--------------- 350 (394)
T ss_pred HhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCCC---------------
Confidence 88888 664322 234799999999999988765433 33 244677777544
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 044823 428 KKEDVETAINILMDDGEERDGRRRRAKEFGE 458 (497)
Q Consensus 428 ~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~ 458 (497)
+.+++.++|.++++|++..+.+++++++...
T Consensus 351 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 351 DPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 7899999999999988777777777766554
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.21 E-value=4.1e-08 Score=99.04 Aligned_cols=99 Identities=22% Similarity=0.176 Sum_probs=70.5
Q ss_pred CCCeeeecccchHh---hhccCCcccccc-ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFLT-HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~It-HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.++|.+.+++|+.. ++..+++-++-+ +.|. .++.||+++|+|+|+. |.......+ +.-..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i-~~~~~G~lv~~~--- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVI-TDGENGLLVDFF--- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhc-ccCCceEEcCCC---
Confidence 57899999998754 677888822222 3333 4889999999999985 444556666 355567777554
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 459 (497)
+++++.++|.++++|++..+.+.+++++..+.
T Consensus 352 ------------d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 352 ------------DPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 78999999999999886666666666654433
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=3.9e-08 Score=98.11 Aligned_cols=333 Identities=13% Similarity=0.084 Sum_probs=171.5
Q ss_pred cEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 8 FHFILLPFL-AQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 8 ~~vl~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
|||++++.| .-|.-.-...||+.|.++||+|++++...... ... ...++.+..++.+ ..+..
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~-~~~-------~~~~~~~~~~~~~----~~~~~----- 63 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFR-LDE-------YSPNIFFHEVEVP----QYPLF----- 63 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcc-hhh-------hccCeEEEEeccc----ccchh-----
Confidence 578888776 46777788999999999999999998753211 101 1124555443321 01000
Q ss_pred CCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCc--chHHHHHH-c---CCCeEEEechhHHHHHHHHHhh
Q 044823 87 MLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIP--WTVDTAAK-F---NVPRIIFHGFSCFCLLCLDILR 160 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~a~~~A~~-l---gIP~i~~~~~~~~~~~~~~~~~ 160 (497)
... . . ...+...+.++++. .+||+|.+..... ....++.. . |+|.+.........
T Consensus 64 ~~~--~-~------~~~~~~~l~~~i~~--~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------- 124 (371)
T cd04962 64 QYP--P-Y------DLALASKIAEVAKR--YKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT-------- 124 (371)
T ss_pred hcc--h-h------HHHHHHHHHHHHhc--CCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc--------
Confidence 000 0 0 01123456666777 7999998764322 22333332 2 78987632211000
Q ss_pred hhcccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCc
Q 044823 161 VSKVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGK 240 (497)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 240 (497)
..+... .+.... ....+.++.+++.+-...+ .+... -....+
T Consensus 125 ----------------~~~~~~----------------~~~~~~---~~~~~~~d~ii~~s~~~~~--~~~~~-~~~~~~ 166 (371)
T cd04962 125 ----------------LVGQDP----------------SFQPAT---RFSIEKSDGVTAVSESLRQ--ETYEL-FDITKE 166 (371)
T ss_pred ----------------cccccc----------------cchHHH---HHHHhhCCEEEEcCHHHHH--HHHHh-cCCcCC
Confidence 000000 000111 1223456677766654322 11100 012245
Q ss_pred eEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHH----hCCCCeEEE
Q 044823 241 VWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE----ASKKPFIWV 316 (497)
Q Consensus 241 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~----~~~~~~i~~ 316 (497)
+..++.......... ..+....+.....++ ..+++.+|.... ...+..+++++. +.+.++++.
T Consensus 167 i~vi~n~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~ 233 (371)
T cd04962 167 IEVIPNFVDEDRFRP----------KPDEALKRRLGAPEG-EKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLV 233 (371)
T ss_pred EEEecCCcCHhhcCC----------CchHHHHHhcCCCCC-CeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEE
Confidence 555553322110000 001222222222222 245666776653 223333444443 235565555
Q ss_pred EeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccch-HhhhccCCcccccc---ccC-chhHHHHHHhCCcEeccCCcc
Q 044823 317 SRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQ-VMILSHPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLFT 390 (497)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq-~~lL~~~~~~~~It---HgG-~gs~~eal~~GvP~l~~P~~~ 390 (497)
-.+ ..... +- ....+. ..+++.+.++.++ ..++..+++ +|. ..| -.++.||+++|+|+|+..
T Consensus 234 G~g-~~~~~-----~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~--- 301 (371)
T cd04962 234 GDG-PERSP-----AE-RLARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN--- 301 (371)
T ss_pred cCC-cCHHH-----HH-HHHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC---
Confidence 433 22111 11 111122 2457888888876 558888888 652 233 359999999999999854
Q ss_pred cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 391 DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 391 DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
....+..+ +.-..|...+.. +.+++.+++.++++|++..+.+++++++.
T Consensus 302 -~~~~~e~i-~~~~~G~~~~~~---------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 302 -AGGIPEVV-KHGETGFLVDVG---------------DVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred -CCCchhhh-cCCCceEEcCCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 44456666 355677766544 78899999999999886666777777665
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.18 E-value=3.5e-08 Score=97.44 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCCeeeecccchHh---hhccCCcccccc----ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccc
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFLT----HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVE 412 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~It----HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~ 412 (497)
.+++.+.+|+++.. ++..+++ +|+ ..|+ .++.||+++|+|+|+.+. ..+...+ +..+.|......
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECCC
Confidence 57899999997544 6888888 663 2444 478999999999998654 4456667 366678877655
Q ss_pred cccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044823 413 VPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKE 455 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 455 (497)
+.+++.+++.++++|++..+.+++++++
T Consensus 315 ---------------d~~~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 315 ---------------DAEDLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred ---------------CHHHHHHHHHHHHhChHHHHHHHHhHHH
Confidence 6899999999999988555555555544
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.18 E-value=4.5e-08 Score=98.58 Aligned_cols=346 Identities=13% Similarity=0.082 Sum_probs=174.5
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHH
Q 044823 18 QGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNF 97 (497)
Q Consensus 18 ~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (497)
-|.-..+..|++.|+++||+|++++........... ....++.++.++.. +...... .. +
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~~------~~---~ 80 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAG------PAEYLPK------EE---L 80 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccc------cccCCCh------hh---c
Confidence 578889999999999999999999865332211100 02235666665421 0000000 00 1
Q ss_pred HHHHHhchHHHHHHHhhcCCCCeEEEECCCC--cchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccCCCCCCCccc
Q 044823 98 LTSLQKLQLPFENLFREQTPQPCCIISDMCI--PWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHENVSSDSEYF 175 (497)
Q Consensus 98 ~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (497)
......+...+...++....+||+|++.... ..+..+++.+|+|+|......... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------------------~~~~ 141 (398)
T cd03800 81 WPYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV-------------------KRRH 141 (398)
T ss_pred chhHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc-------------------CCcc
Confidence 1111112233444455511299999987633 346678889999988642210000 0000
Q ss_pred cCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcCCceEEeCcCcCCCccch
Q 044823 176 KVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQGKVWCIGPVSLCNKESL 255 (497)
Q Consensus 176 ~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~ 255 (497)
.... +.. .............+.++.++..+....+ .+.........++..+.+-.....-..
T Consensus 142 ~~~~-------------~~~---~~~~~~~~~~~~~~~ad~ii~~s~~~~~--~~~~~~~~~~~~~~vi~ng~~~~~~~~ 203 (398)
T cd03800 142 LGAA-------------DTY---EPARRIEAEERLLRAADRVIASTPQEAE--ELYSLYGAYPRRIRVVPPGVDLERFTP 203 (398)
T ss_pred cccc-------------ccc---chhhhhhHHHHHHhhCCEEEEcCHHHHH--HHHHHccccccccEEECCCCCccceec
Confidence 0000 000 0000011112234567777777655322 111111111123555554322110000
Q ss_pred hhhhcCCCCCCChhh-hhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhC-----CCCeEEEEeCCCchhhhh-h
Q 044823 256 DKVERGNKAAIDIPE-CLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS-----KKPFIWVSRVGNKLEELE-K 328 (497)
Q Consensus 256 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~-~ 328 (497)
...... ...+. ..++ ..+++..|+.... ..+..+++++... +.++++.-+......... .
T Consensus 204 ---------~~~~~~~~~~~~-~~~~-~~~i~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~ 270 (398)
T cd03800 204 ---------YGRAEARRARLL-RDPD-KPRILAVGRLDPR--KGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEE 270 (398)
T ss_pred ---------ccchhhHHHhhc-cCCC-CcEEEEEcccccc--cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhH
Confidence 000011 11121 1222 3566777876542 2233444444432 455555544332210000 0
Q ss_pred hhchhhHHHHh-cCCCeeeecccchHh---hhccCCccccccc---cC-chhHHHHHHhCCcEeccCCcccchhhHHHHH
Q 044823 329 WLVEENFEERI-KGRGLLIRGWAPQVM---ILSHPAVGGFLTH---CG-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIV 400 (497)
Q Consensus 329 ~~lp~~~~~~~-~~~nv~v~~~~pq~~---lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~ 400 (497)
. + ..+.+.. ..+|+.+.+|+|+.+ ++..+++ +++. .| -.++.||+++|+|+|+.... .....+
T Consensus 271 ~-~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i- 341 (398)
T cd03800 271 E-L-RELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV- 341 (398)
T ss_pred H-H-HHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-
Confidence 0 0 0111111 246899999999755 5888888 7643 22 35899999999999976543 355567
Q ss_pred HHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 401 EVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 401 e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
++.+.|...+.. +.+++.++|.++++|++..+.+.++|++..
T Consensus 342 ~~~~~g~~~~~~---------------~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 342 VDGVTGLLVDPR---------------DPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred cCCCCeEEeCCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 477788887654 789999999999998766666666665543
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.16 E-value=7e-08 Score=95.66 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=72.1
Q ss_pred CCCeeeecccchHh---hhccCCccccccc----cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccc
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEV 413 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~ 413 (497)
.+|+.+.+++|+.. ++..+++ +|.- |.-.++.||+++|+|+|+.. ....+..+ +..+.|...+..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhhe-ecCceeEEeCCC-
Confidence 56899999998754 6888888 6633 33468999999999999864 34456666 466788888655
Q ss_pred ccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 044823 414 PMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELA 460 (497)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~ 460 (497)
+. ++.+++.++++|++..+.+++++++.....
T Consensus 330 --------------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 330 --------------DE-ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred --------------CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 22 899999999999866666777776666553
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.15 E-value=1.2e-07 Score=96.03 Aligned_cols=352 Identities=14% Similarity=0.059 Sum_probs=179.1
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
++.||++++....|+-..+..+|+.|+++||+|++++...... ..+.. ...++.++.++.. .. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~-~~~~~-----~~~~v~~~~~~~~-------~~--~~ 66 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPP-HDEIL-----SNPNITIHPLPPP-------PQ--RL 66 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCC-CHHHh-----cCCCEEEEECCCC-------cc--cc
Confidence 5678999999989998999999999999999999998753221 11111 2346888776421 10 00
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECC-CCc----chHHHHHHcCCCeEEEechhHHHHHHHHHhh
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDM-CIP----WTVDTAAKFNVPRIIFHGFSCFCLLCLDILR 160 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-~~~----~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~ 160 (497)
.. ....+..+..........+..+++. .++|+|++.. ... .+..++...++|.|...........
T Consensus 67 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~------ 136 (415)
T cd03816 67 NK--LPFLLFAPLKVLWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTIL------ 136 (415)
T ss_pred cc--chHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHH------
Confidence 00 0111212222222333444445565 6899998753 221 2444566679998864221111100
Q ss_pred hhcccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHh-cccccEEEecchhhhhHHHHHHHHhhcCC
Q 044823 161 VSKVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAA-DKKTYGVIINTFEELESASVKEYKNAKQG 239 (497)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 239 (497)
.. +... ...+..+...+... .+.++.++..|-..-+ ++.... ..+.
T Consensus 137 -------------~~---~~~~--------------~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~--~l~~~~-~~~~ 183 (415)
T cd03816 137 -------------AL---KLGE--------------NHPLVRLAKWYEKLFGRLADYNLCVTKAMKE--DLQQFN-NWKI 183 (415)
T ss_pred -------------hc---ccCC--------------CCHHHHHHHHHHHHHhhcCCEeeecCHHHHH--HHHhhh-ccCC
Confidence 00 0000 00011122222222 2456777776655322 111111 1123
Q ss_pred ceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhc----------------cCCCCeEEEEeeCCcccCCHhhHHHHH
Q 044823 240 KVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLD----------------SQQPSSVVYVCLGSICNLTSSQLIELG 303 (497)
Q Consensus 240 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------~~~~~~vv~vs~GS~~~~~~~~~~~~~ 303 (497)
++..|..-......+.. .......+.. ..+++..++++.|.... ...+..++
T Consensus 184 ki~vI~Ng~~~~f~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li 251 (415)
T cd03816 184 RATVLYDRPPEQFRPLP----------LEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILL 251 (415)
T ss_pred CeeecCCCCHHHceeCc----------HHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHH
Confidence 44333211000000000 0000000110 01223356666676553 23334444
Q ss_pred HHHHhC-----------CCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeee-cccchHh---hhccCCcccccc-c
Q 044823 304 LGLEAS-----------KKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIR-GWAPQVM---ILSHPAVGGFLT-H 367 (497)
Q Consensus 304 ~al~~~-----------~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~-~~~pq~~---lL~~~~~~~~It-H 367 (497)
+|+... +.+ ++..|.+.....+. ...++..-+|+++. +|+|..+ +|+.+++ +|. +
T Consensus 252 ~A~~~l~~~~~~~~~~~~i~-l~ivG~G~~~~~l~------~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~ 322 (415)
T cd03816 252 DALVAYEKSAATGPKLPKLL-CIITGKGPLKEKYL------ERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLH 322 (415)
T ss_pred HHHHHHHHhhcccccCCCEE-EEEEecCccHHHHH------HHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEcc
Confidence 444432 123 33344443222111 12222233466644 6887544 6888888 652 1
Q ss_pred -----cCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhc
Q 044823 368 -----CGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMD 441 (497)
Q Consensus 368 -----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 441 (497)
-|+ +.+.||+++|+|+|+... ......+ ++-+.|... . +.+++.++|.++++
T Consensus 323 ~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv--~---------------d~~~la~~i~~ll~ 380 (415)
T cd03816 323 TSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF--G---------------DSEELAEQLIDLLS 380 (415)
T ss_pred ccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--C---------------CHHHHHHHHHHHHh
Confidence 123 479999999999998543 3455666 577788776 2 57899999999999
Q ss_pred C---ChhhHHHHHHHHHHHH
Q 044823 442 D---GEERDGRRRRAKEFGE 458 (497)
Q Consensus 442 ~---~~~~~~~~~~a~~~~~ 458 (497)
| ++..+.+.+++++.++
T Consensus 381 ~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 381 NFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred cCCCHHHHHHHHHHHHHhhh
Confidence 8 7777777777777663
No 54
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.14 E-value=3.9e-07 Score=92.48 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=90.4
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhC----CCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchH---hh
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEAS----KKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQV---MI 355 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~l 355 (497)
.+++..|+... ..-+..++++++.. +.+++ ..|.+...+. +- ...++...+|+.+.+|+|+. .+
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~~~~~-----l~-~~~~~~~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGGGKAR-----LE-KMAQCRGLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCChhHHH-----HH-HHHHHcCCCceEEeCCCCHHHHHHH
Confidence 45556777653 23344555555533 23343 3343322111 11 11222234589999999864 47
Q ss_pred hccCCccccccccCc------hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCH
Q 044823 356 LSHPAVGGFLTHCGW------NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKK 429 (497)
Q Consensus 356 L~~~~~~~~ItHgG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 429 (497)
++.+++-++.+.-+. +.+.|++.+|+|+|+....+. .....+ + +.|+..+.. +.
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~~---------------d~ 360 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEPE---------------SV 360 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCCC---------------CH
Confidence 888888544444332 236899999999999875431 122344 3 788888655 78
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 044823 430 EDVETAINILMDDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 430 ~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 459 (497)
+++.++|.++++|++..+.+++++++..+.
T Consensus 361 ~~la~~i~~l~~~~~~~~~~~~~a~~~~~~ 390 (412)
T PRK10307 361 EALVAAIAALARQALLRPKLGTVAREYAER 390 (412)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999999999886677777777765543
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.13 E-value=6e-08 Score=95.36 Aligned_cols=331 Identities=15% Similarity=0.102 Sum_probs=172.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCC
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDML 88 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (497)
||++++....|+......+++.|.++||+|++++....... .. ...++.++.++.. .. . .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---~~-----~~~~~~~~~~~~~-------~~--~---~ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---EL-----EALGVKVIPIPLD-------RR--G---I 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---cc-----ccCCceEEecccc-------cc--c---c
Confidence 57888888889999999999999999999999988754332 11 1235666665421 00 0 0
Q ss_pred CchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCc--chHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccC
Q 044823 89 PSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIP--WTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHE 166 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
.....+. ....+.+.++. .+||+|++..... .+...+...+.|.+...........
T Consensus 61 ~~~~~~~--------~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 118 (359)
T cd03808 61 NPFKDLK--------ALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------ 118 (359)
T ss_pred ChHhHHH--------HHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------
Confidence 0001111 11234556666 7999999876443 3344455466665553322111000
Q ss_pred CCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHH-HhcccccEEEecchhhhhHHHHHHHHhhcCCceEEeC
Q 044823 167 NVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKIL-AADKKTYGVIINTFEELESASVKEYKNAKQGKVWCIG 245 (497)
Q Consensus 167 ~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vG 245 (497)
... . .....+.... ...+.++.++..+-...+ .+......-+.....+.
T Consensus 119 -------------~~~----~-----------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~--~~~~~~~~~~~~~~~~~ 168 (359)
T cd03808 119 -------------TSG----G-----------LKRRLYLLLERLALRFTDKVIFQNEDDRD--LALKLGIIKKKKTVLIP 168 (359)
T ss_pred -------------ccc----h-----------hHHHHHHHHHHHHHhhccEEEEcCHHHHH--HHHHhcCCCcCceEEec
Confidence 000 0 0011111111 122445677776654332 11111000001233333
Q ss_pred cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCccc-CCHhhHHHHHHHHHh--CCCCeEEEEeCCCc
Q 044823 246 PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICN-LTSSQLIELGLGLEA--SKKPFIWVSRVGNK 322 (497)
Q Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~ 322 (497)
|...+...... .... .++++.+++..|+... ...+.+.+.++.+.+ .+.++++.-.....
T Consensus 169 ~~~~~~~~~~~----------~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~ 231 (359)
T cd03808 169 GSGVDLDRFSP----------SPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE 231 (359)
T ss_pred CCCCChhhcCc----------cccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Confidence 32221110000 0000 1223357777887654 223344444444443 23444444333221
Q ss_pred hhhhhhhhchhh-HHHHhcCCCeeeecccch-HhhhccCCccccccccC----chhHHHHHHhCCcEeccCCcccchhhH
Q 044823 323 LEELEKWLVEEN-FEERIKGRGLLIRGWAPQ-VMILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFTDQFCNE 396 (497)
Q Consensus 323 ~~~~~~~~lp~~-~~~~~~~~nv~v~~~~pq-~~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na 396 (497)
.. .... .......+++.+.++..+ ..++..+++ +|.-.. -+++.||+.+|+|+|+... ..+.
T Consensus 232 -~~-----~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~----~~~~ 299 (359)
T cd03808 232 -NP-----AAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDV----PGCR 299 (359)
T ss_pred -hh-----hHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecC----CCch
Confidence 10 0000 111112467888887554 558888888 664332 4689999999999998544 3445
Q ss_pred HHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 397 KLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 397 ~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
..+ ++.+.|...+.. +.+++.++|.+++.|++..+.+.+++++.
T Consensus 300 ~~i-~~~~~g~~~~~~---------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 300 EAV-IDGVNGFLVPPG---------------DAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred hhh-hcCcceEEECCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 566 466778777644 78999999999999886666666666655
No 56
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=1.6e-08 Score=91.50 Aligned_cols=133 Identities=19% Similarity=0.189 Sum_probs=94.7
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccc-hHhhhccCC
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAP-QVMILSHPA 360 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~p-q~~lL~~~~ 360 (497)
-|+|++|.... ....-++++.+...++.+-.+++.... -++.+..+. ..+|+....... ...++..++
T Consensus 160 ~ilI~lGGsDp--k~lt~kvl~~L~~~~~nl~iV~gs~~p--------~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 160 DILITLGGSDP--KNLTLKVLAELEQKNVNLHIVVGSSNP--------TLKNLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred eEEEEccCCCh--hhhHHHHHHHhhccCeeEEEEecCCCc--------chhHHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 49999986552 234456777777777666666664332 112222222 356666644454 355999999
Q ss_pred ccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHh
Q 044823 361 VGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILM 440 (497)
Q Consensus 361 ~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 440 (497)
+ .|+-|| .|+.|++.-|+|.+++|+...|---|... +.+|+-..++.. +.......-+.++.
T Consensus 230 ~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~--------------l~~~~~~~~~~~i~ 291 (318)
T COG3980 230 L--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH--------------LKDLAKDYEILQIQ 291 (318)
T ss_pred h--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC--------------CchHHHHHHHHHhh
Confidence 9 999988 48999999999999999999999999999 599988888654 45555666667788
Q ss_pred cCC
Q 044823 441 DDG 443 (497)
Q Consensus 441 ~~~ 443 (497)
+|.
T Consensus 292 ~d~ 294 (318)
T COG3980 292 KDY 294 (318)
T ss_pred hCH
Confidence 876
No 57
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.08 E-value=3.7e-07 Score=92.99 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred Ceeeecccch-HhhhccCCccccccc-----cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccc
Q 044823 343 GLLIRGWAPQ-VMILSHPAVGGFLTH-----CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMK 416 (497)
Q Consensus 343 nv~v~~~~pq-~~lL~~~~~~~~ItH-----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~ 416 (497)
++++.+...+ ..+++.+++ ++.. +|..++.||+++|+|+|+-|..+++......+ ++.|+++.. .
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~--~---- 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV--E---- 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE--C----
Confidence 3444444333 457788887 4331 23346999999999999999988888888777 366665543 3
Q ss_pred cccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 044823 417 FGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYH 482 (497)
Q Consensus 417 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 482 (497)
+++++.+++.++++|++..+.+.+++++.... .....+.+.+.+.++.
T Consensus 374 -----------d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~-------~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 374 -----------DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ-------NQGALQRTLQLLEPYL 421 (425)
T ss_pred -----------CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-------CccHHHHHHHHHHHhc
Confidence 67899999999999886666666666655443 2233344445555443
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.08 E-value=1e-07 Score=93.35 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=68.0
Q ss_pred CCCeeeecccch-HhhhccCCcccccccc---C-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHc-ceeEeccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLR-IGVSVGVEVP 414 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~ItHg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G-~G~~l~~~~~ 414 (497)
.+++.+.++..+ ..++..+++ +|.-. | -+++.||+++|+|+|+.+..+.+ ..+. ..| .|...+..
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~~-- 304 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPNG-- 304 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCCC--
Confidence 456777777443 568888888 66443 2 36899999999999986554433 2342 444 77777544
Q ss_pred cccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 044823 415 MKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 459 (497)
+.+++.++|.++++|++..+.++++++++.+.
T Consensus 305 -------------~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~ 336 (348)
T cd03820 305 -------------DVEALAEALLRLMEDEELRKRMGANARESAER 336 (348)
T ss_pred -------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 78999999999999987666777776555443
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.07 E-value=9.5e-07 Score=86.97 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=69.4
Q ss_pred cCCCeeeecccch---HhhhccCCcccccc----ccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccc
Q 044823 340 KGRGLLIRGWAPQ---VMILSHPAVGGFLT----HCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVE 412 (497)
Q Consensus 340 ~~~nv~v~~~~pq---~~lL~~~~~~~~It----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~ 412 (497)
..+++.+.+++++ ..++..+++ +|. -|.-+++.||+++|+|+|+.+. ......+ +..+.|...+..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCCC
Confidence 3678999999974 347888888 663 2445689999999999998665 4566667 467778877654
Q ss_pred cccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044823 413 VPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAK 454 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 454 (497)
+.+++.+++.++++|++..+.+.++++
T Consensus 327 ---------------~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 327 ---------------DPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ---------------CHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 689999999999998855555555554
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.05 E-value=3.4e-07 Score=90.58 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=94.7
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhCC-CCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchH---hhhcc
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEASK-KPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQV---MILSH 358 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~lL~~ 358 (497)
.+++..|+... ......++++++... .++++.-. +..... +..-..+....+||.+.+|+|+. .++..
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~-g~~~~~-----~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ 263 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGE-GPLEAE-----LEALAAALGLLDRVRFLGRLDDEEKAALLAA 263 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeC-ChhHHH-----HHHHHHhcCCcceEEEcCCCCHHHHHHHHHh
Confidence 46667777653 234556677777665 44444432 221111 11111111235799999999974 47777
Q ss_pred CCcccccc---ccCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHH-HcceeEeccccccccccccccccccCHHHHH
Q 044823 359 PAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEV-LRIGVSVGVEVPMKFGEEEKIGVLVKKEDVE 433 (497)
Q Consensus 359 ~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~-~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 433 (497)
+++-++.+ +.|.| ++.||+++|+|+|+....+. ...+ +. -+.|...+.. +.+++.
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~----~~~i-~~~~~~g~~~~~~---------------d~~~~~ 323 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTG----GSYV-NLHGVTGLVVPPG---------------DPAALA 323 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCc----hhHH-hhCCCceEEeCCC---------------CHHHHH
Confidence 88843333 24544 79999999999998654443 3344 23 5677777544 789999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHH
Q 044823 434 TAINILMDDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 434 ~ai~~vl~~~~~~~~~~~~a~~~~~~ 459 (497)
++|.++++|++..+.+++++++....
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 324 EAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99999999987777777777776544
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.99 E-value=1.7e-06 Score=87.57 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=70.8
Q ss_pred CCCeeeecccchH---hhhccCCcccccc---ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccc
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEV 413 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~ 413 (497)
.+++.+.+++++. .+++.+++ +|. +.|+ .++.||+++|+|+|+... ......+ ++-+.|...+..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCCC-
Confidence 4689999999864 57888888 663 3344 489999999999998654 3445566 466677777544
Q ss_pred ccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 414 PMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
+.+++.++|.++++|++..+.+++++++..
T Consensus 354 --------------d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 354 --------------DPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred --------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 789999999999998766667777766544
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.98 E-value=8.6e-07 Score=88.02 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=73.6
Q ss_pred CCCeeeecccc-hH---hhhccCCcccccccc----CchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccc
Q 044823 341 GRGLLIRGWAP-QV---MILSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVE 412 (497)
Q Consensus 341 ~~nv~v~~~~p-q~---~lL~~~~~~~~ItHg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~ 412 (497)
..++.+.+|++ +. .+++.+++ +|.-. .-+++.||+++|+|+|+... ......+ +..+.|..++..
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~~~ 315 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAKPG 315 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeCCC
Confidence 56788889998 43 46888888 77643 24689999999999997654 2333445 244566666533
Q ss_pred cccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 044823 413 VPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPR 480 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 480 (497)
+.+++.+++.++++|++..+.+.+++++.... .-+.++.++++++-
T Consensus 316 ---------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-------~~s~~~~~~~~~~~ 361 (365)
T cd03825 316 ---------------DPEDLAEGIEWLLADPDEREELGEAARELAEN-------EFDSRVQAKRYLSL 361 (365)
T ss_pred ---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHH
Confidence 78899999999999875555555555554332 33444455555443
No 63
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.96 E-value=7.1e-07 Score=88.24 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCCeeeecccchH---hhhccCCcccccc--c--------cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHccee
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLT--H--------CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGV 407 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~It--H--------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~ 407 (497)
.+|+.+.+++|+. .++..+++ +|. . |.-+++.||+++|+|+|+.+.. .....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceE
Confidence 5789999999754 47778888 555 2 2336899999999999986542 233455 3555787
Q ss_pred EeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 408 SVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
..+.. +.+++.++|.++++|++....++++|++..
T Consensus 308 ~~~~~---------------~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~ 342 (355)
T cd03799 308 LVPPG---------------DPEALADAIERLLDDPELRREMGEAGRARV 342 (355)
T ss_pred EeCCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 77544 889999999999998865556666665443
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.94 E-value=5e-06 Score=82.10 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=62.1
Q ss_pred CCCeeeecccchH---hhhccCCccccc----cccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccc
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFL----THCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEV 413 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~I----tHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~ 413 (497)
.+|+.+.+++++. .++..+++ +| +-|.-+++.||+++|+|+|+-+. ......+ +..+.|...+..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~~~~g~~~~~~- 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TDGENGLLVPPG- 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cCCcceeEECCC-
Confidence 5689999999864 46788888 55 22445689999999999997554 3455566 466667777654
Q ss_pred ccccccccccccccCHHHHHHHHHHHhcCCh
Q 044823 414 PMKFGEEEKIGVLVKKEDVETAINILMDDGE 444 (497)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 444 (497)
+.+++.+++.++++|++
T Consensus 330 --------------~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 330 --------------DPEALAEAILRLLADPW 346 (377)
T ss_pred --------------CHHHHHHHHHHHhcCcH
Confidence 88999999999999874
No 65
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.92 E-value=2.2e-06 Score=84.81 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=90.9
Q ss_pred EEEEeeCCccc-CCHhhHHHHHHHHHhC--CCCeEEEEeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccch-Hhhhc
Q 044823 283 VVYVCLGSICN-LTSSQLIELGLGLEAS--KKPFIWVSRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQ-VMILS 357 (497)
Q Consensus 283 vv~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq-~~lL~ 357 (497)
.+++..|.... ...+.+...+..+... +.+++++ |.........+. +-. ...+. ..+++.+.+|.++ ..++.
T Consensus 186 ~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~iv-G~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~g~~~~~~~~l~ 262 (355)
T cd03819 186 PVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIV-GDAQGRRFYYAE-LLE-LIKRLGLQDRVTFVGHCSDMPAAYA 262 (355)
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEE-ECCcccchHHHH-HHH-HHHHcCCcceEEEcCCcccHHHHHH
Confidence 56666777654 3344555555555553 3344444 333221111000 000 11111 2467899898654 55888
Q ss_pred cCCcccccc--ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHH
Q 044823 358 HPAVGGFLT--HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVET 434 (497)
Q Consensus 358 ~~~~~~~It--HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (497)
.+++-++-+ +-|+ ++++||+++|+|+|+.-. ......+ +.-+.|...+.+ +.+++.+
T Consensus 263 ~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~~---------------~~~~l~~ 322 (355)
T cd03819 263 LADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPPG---------------DAEALAQ 322 (355)
T ss_pred hCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCCC---------------CHHHHHH
Confidence 888843333 2344 599999999999998643 3345566 365678887654 8899999
Q ss_pred HHHHHh-cCChhhHHHHHHHHHHHHH
Q 044823 435 AINILM-DDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 435 ai~~vl-~~~~~~~~~~~~a~~~~~~ 459 (497)
+|..++ .|+++.+.++++|++..+.
T Consensus 323 ~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 323 ALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 996555 4676677777777776654
No 66
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.88 E-value=7.4e-06 Score=89.12 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=68.2
Q ss_pred CCCeeeecccchHh---hhccCC--ccccccc---cCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecc
Q 044823 341 GRGLLIRGWAPQVM---ILSHPA--VGGFLTH---CGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGV 411 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~--~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~ 411 (497)
.++|.+.+++++.+ ++..++ ..+||.- =|+ .++.||+++|+|+|+....+ ....+ +.-.-|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEECC
Confidence 46788888888754 454442 1227663 454 48899999999999986533 33444 35556777765
Q ss_pred ccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 044823 412 EVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGE 458 (497)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~ 458 (497)
. ++++|+++|.++++|++..+.+.+++++...
T Consensus 622 ~---------------D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 622 H---------------DQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred C---------------CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4 7899999999999998666677777666543
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.86 E-value=5.3e-06 Score=83.44 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=67.7
Q ss_pred CCCeeeecccchH---hhhccCCcccccc---ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccc
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEV 413 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~ 413 (497)
.++|.+.+++|+. .++..+++ ++. .-|+ .++.||+++|+|+|+.-. ......+ ..-+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeC---
Confidence 4789999999975 46788887 653 2222 478999999999999643 3344556 3555666652
Q ss_pred ccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 414 PMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
.+.+++.++|.++++|++..+.+++++++..
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2678999999999998866667777766643
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.86 E-value=7.6e-06 Score=80.97 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCCeeeecccchHh---hhccCCccccccc-cC-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFLTH-CG-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~ItH-gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.+++.+.+|+++.. ++..+++-++-++ .| -+++.||+++|+|+|+.+ .......+ +. +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~-~~-~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELI-EY-GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHh-hc-CceEEeCC----
Confidence 57899999999544 5788888222232 23 358999999999999865 34455566 35 77776643
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 331 ------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ------------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ------------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34899999999999886666777776666
No 69
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.83 E-value=9.5e-07 Score=88.05 Aligned_cols=320 Identities=12% Similarity=0.095 Sum_probs=163.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHHHHHHhhhcCCCeEE-EEecCCccccCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQH-GATATIVTTPVNAARFKTVLARALQCRLQIRL-IEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~i~~~~~~~~~~~~~~~~ 85 (497)
|||++ -.++..|+.=+.+|.++|.++ +.++.++.+...........+. .++.. +.+. + + .
T Consensus 1 ~~i~~-~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-----~~i~~~~~~~-------~--~--~- 62 (365)
T TIGR00236 1 LKVSI-VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-----FHLPPDYDLN-------I--M--S- 62 (365)
T ss_pred CeEEE-EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCCCeeee-------c--C--C-
Confidence 35665 457888999999999999987 6676666655433323222211 12221 1111 1 0 0
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEEC--CCC-cchHHHHHHcCCCeEEEechhHHHHHHHHHhhhh
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISD--MCI-PWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVS 162 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D--~~~-~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~ 162 (497)
... . ...........+.+++++ .+||+|++- ... .++..+|..+|||++.+...- .
T Consensus 63 ~~~---~----~~~~~~~~~~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~----------- 121 (365)
T TIGR00236 63 PGQ---T----LGEITSNMLEGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-R----------- 121 (365)
T ss_pred CCC---C----HHHHHHHHHHHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-C-----------
Confidence 000 1 112223334677788888 899999875 333 467889999999987642110 0
Q ss_pred cccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcC-Cce
Q 044823 163 KVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQ-GKV 241 (497)
Q Consensus 163 ~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~ 241 (497)
+.+ ....++.. .......+ .++.++..+-..-+ .+ .+...+ .++
T Consensus 122 -------s~~---~~~~~~~~---------------~~r~~~~~------~ad~~~~~s~~~~~--~l--~~~G~~~~~I 166 (365)
T TIGR00236 122 -------TGD---RYSPMPEE---------------INRQLTGH------IADLHFAPTEQAKD--NL--LRENVKADSI 166 (365)
T ss_pred -------cCC---CCCCCccH---------------HHHHHHHH------HHHhccCCCHHHHH--HH--HHcCCCcccE
Confidence 000 00001110 00011111 12333433322111 11 111222 467
Q ss_pred EEeCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhC-----CCCeEEE
Q 044823 242 WCIGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS-----KKPFIWV 316 (497)
Q Consensus 242 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~ 316 (497)
..+|....+....... . ....++.+-+. .++.+++++++-..... ..+..+++++... +.++++.
T Consensus 167 ~vign~~~d~~~~~~~---~----~~~~~~~~~~~--~~~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~ 236 (365)
T TIGR00236 167 FVTGNTVIDALLTNVE---I----AYSSPVLSEFG--EDKRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYP 236 (365)
T ss_pred EEeCChHHHHHHHHHh---h----ccchhHHHhcC--CCCCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 8888443221100000 0 00112222222 12346666654322111 3466677776643 4556665
Q ss_pred EeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccch---HhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccc
Q 044823 317 SRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQ---VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQ 392 (497)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq---~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ 392 (497)
...+.. .-..+.+.. ..+++++.+.+++ ..+++++++ +|+-.|. .+.||+++|+|+|..+..+++
T Consensus 237 ~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~ 305 (365)
T TIGR00236 237 VHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTER 305 (365)
T ss_pred CCCChH--------HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCC
Confidence 433221 111122222 2357888776654 456778887 8987764 479999999999999766665
Q ss_pred hhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCC
Q 044823 393 FCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 393 ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
+. +. ..|.+..+. .++++|.+++.++++|+
T Consensus 306 ~e----~~-~~g~~~lv~----------------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 306 PE----TV-EAGTNKLVG----------------TDKENITKAAKRLLTDP 335 (365)
T ss_pred hH----HH-hcCceEEeC----------------CCHHHHHHHHHHHHhCh
Confidence 52 32 456665542 37889999999999887
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.81 E-value=5.8e-06 Score=84.55 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=65.4
Q ss_pred CCCeeeecccchHhh---hccC----Ccccccccc---Cc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEe
Q 044823 341 GRGLLIRGWAPQVMI---LSHP----AVGGFLTHC---GW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSV 409 (497)
Q Consensus 341 ~~nv~v~~~~pq~~l---L~~~----~~~~~ItHg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l 409 (497)
.+++.+.+++++.++ +..+ ++ ||.-. |+ .+++||+++|+|+|+... ......+ +.-..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEe
Confidence 467888888876553 5544 55 77643 43 589999999999998754 3355556 355568777
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044823 410 GVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKE 455 (497)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 455 (497)
+.. +++++.++|.++++|++..+.+.+++++
T Consensus 389 ~~~---------------d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 389 DVL---------------DLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred CCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 655 7899999999999987555555555544
No 71
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.81 E-value=1.5e-06 Score=85.03 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCCeeeecccch-HhhhccCCcccccc--c--cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLT--H--CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~It--H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.+++.+.++.++ ..++..+++ +|. + |.-+++.||+++|+|+|+... ......+ +..+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREIL-EDGENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHh-cCCCceEEECCC---
Confidence 467888888775 458888888 552 2 234689999999999998543 3566677 477888888655
Q ss_pred ccccccccccccCHHHH---HHHHHHHhcCChhhHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDV---ETAINILMDDGEERDGRRR 451 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l---~~ai~~vl~~~~~~~~~~~ 451 (497)
+.+.+ .+++.+++++++..+.+++
T Consensus 315 ------------~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 315 ------------DEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred ------------CHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 56666 5666666666644444444
No 72
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.81 E-value=5.2e-06 Score=82.63 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=69.8
Q ss_pred CCCeeeecccchHh---hhccCCccccccc----------cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHccee
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFLTH----------CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGV 407 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~ItH----------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~ 407 (497)
.+++.+.+++|+.+ ++..+++ +|.- |--+++.||+++|+|+|+-+.. .++..+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 56899999998644 5888888 5532 2246899999999999986553 466666 4777888
Q ss_pred EeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 408 SVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
..+.. +.+++.++|.++++|++..+.+++++++..
T Consensus 317 ~~~~~---------------d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 351 (367)
T cd05844 317 LVPEG---------------DVAALAAALGRLLADPDLRARMGAAGRRRV 351 (367)
T ss_pred EECCC---------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 77644 779999999999998755555555555543
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.81 E-value=3.6e-06 Score=83.35 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=67.5
Q ss_pred CCCeeeec-ccch---HhhhccCCcccccc--c----cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEec
Q 044823 341 GRGLLIRG-WAPQ---VMILSHPAVGGFLT--H----CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVG 410 (497)
Q Consensus 341 ~~nv~v~~-~~pq---~~lL~~~~~~~~It--H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~ 410 (497)
.+++.+.+ |+|+ ..++..+++ +|. + |.-++++||+++|+|+|+.+..+ ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 46777765 4875 457888888 652 2 33458899999999999877654 3344 3667777776
Q ss_pred cccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 044823 411 VEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 459 (497)
.. +.+++.+++.++++|++..+.+++++++..+.
T Consensus 318 ~~---------------d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 318 PG---------------DPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred CC---------------CHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 54 68999999999999876555666666555443
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.80 E-value=3.4e-05 Score=75.92 Aligned_cols=92 Identities=23% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCCeeeecccch-HhhhccCCccccccccC----chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.+++.+.+...+ ..+++.+++ +|.... -+++.||+++|+|+|+. |...+...+. + .|...+..
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~-~--~g~~~~~~--- 317 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVG-D--TGFLVPPG--- 317 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhh-c--CCEEeCCC---
Confidence 356666665544 568888888 775443 36999999999999984 4455666663 5 66666544
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 318 ------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (365)
T cd03807 318 ------------DPEALAEAIEALLADPALRQALGEAARER 346 (365)
T ss_pred ------------CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 68999999999999875444444444433
No 75
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.79 E-value=2.4e-06 Score=86.24 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=66.9
Q ss_pred CCCeeeecccch-HhhhccCCccccc--cc--cCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFL--TH--CGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVP 414 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~I--tH--gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~ 414 (497)
.++|.+.+++++ ..+++.+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. .. +..|.|+.+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC-C--
Confidence 568999999986 458888888 65 32 4654 699999999999998764321 12 1345666664 4
Q ss_pred cccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 415 MKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
+++++.++|.++++|++..+.+.+++++..
T Consensus 348 -------------~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 348 -------------DPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred -------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 789999999999998755556666665543
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.77 E-value=4.4e-06 Score=83.04 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=87.7
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhCC--CCeEEEEeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccch-----Hh
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEASK--KPFIWVSRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQ-----VM 354 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq-----~~ 354 (497)
.+++..|.........+..+++++.... .++++ +|.+...+. +- ...++. .++++.+.+|+++ ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~~~~~-----l~-~~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGSDFEK-----CK-AYSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCccHHH-----HH-HHHHHcCCCCeEEEecccCCcHHHHHH
Confidence 3556677654322334566777776543 33333 343322111 11 111222 2568999999854 22
Q ss_pred hhccCCcccccc--c--cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHH
Q 044823 355 ILSHPAVGGFLT--H--CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKE 430 (497)
Q Consensus 355 lL~~~~~~~~It--H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 430 (497)
.++.+++ +|. + |--.++.||+++|+|+|+.-..+ .....+ +.-..|..++.. +.+
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~---g~~eiv-~~~~~G~lv~~~---------------d~~ 312 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS---GPRDII-KPGLNGELYTPG---------------NID 312 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC---ChHHHc-cCCCceEEECCC---------------CHH
Confidence 3455666 553 2 22469999999999999865222 223345 355567777544 899
Q ss_pred HHHHHHHHHhcCCh--hhHHHHHHHHHHHHH
Q 044823 431 DVETAINILMDDGE--ERDGRRRRAKEFGEL 459 (497)
Q Consensus 431 ~l~~ai~~vl~~~~--~~~~~~~~a~~~~~~ 459 (497)
++.++|.++++|++ ..+.++++++++...
T Consensus 313 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 313 EFVGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 99999999999885 244555555555554
No 77
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.77 E-value=3.5e-05 Score=77.76 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=75.0
Q ss_pred eEEEEeeCCccc-CCHhhHHHHHHHHHhC--CCCeEEEEeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccchH---h
Q 044823 282 SVVYVCLGSICN-LTSSQLIELGLGLEAS--KKPFIWVSRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQV---M 354 (497)
Q Consensus 282 ~vv~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~---~ 354 (497)
..+++..|.... ...+.+...+..+.+. +.+++++ |.+....... ...++. ..+++.+.+|+|+. .
T Consensus 193 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~------~~~~~~~l~~~v~~~G~~~~~~~~~ 265 (398)
T cd03796 193 KITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIG-GDGPKRILLE------EMREKYNLQDRVELLGAVPHERVRD 265 (398)
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEE-eCCchHHHHH------HHHHHhCCCCeEEEeCCCCHHHHHH
Confidence 356777777654 2334444444444332 3344443 3322111111 111222 24578889999853 4
Q ss_pred hhccCCcccccc---ccCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHH
Q 044823 355 ILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKE 430 (497)
Q Consensus 355 lL~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 430 (497)
+++.+++ +|. +-|+| ++.||+++|+|+|+-...+ ....+ +. |-+... . .+.+
T Consensus 266 ~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~--~--------------~~~~ 321 (398)
T cd03796 266 VLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA--E--------------PDVE 321 (398)
T ss_pred HHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec--C--------------CCHH
Confidence 7778888 653 33544 9999999999999877643 23344 23 323222 2 3679
Q ss_pred HHHHHHHHHhcCC
Q 044823 431 DVETAINILMDDG 443 (497)
Q Consensus 431 ~l~~ai~~vl~~~ 443 (497)
++.+++.+++++.
T Consensus 322 ~l~~~l~~~l~~~ 334 (398)
T cd03796 322 SIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999864
No 78
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.72 E-value=3.2e-05 Score=74.84 Aligned_cols=292 Identities=18% Similarity=0.201 Sum_probs=156.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHHH
Q 044823 19 GHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFL 98 (497)
Q Consensus 19 GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (497)
-|+.-+-.+.++|.++||+|.+.+-... ...+.+.. .++.+..++- .+ . .....+.
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~--------~g-~--------~~~~Kl~ 66 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGK--------HG-D--------SLYGKLL 66 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcC--------CC-C--------CHHHHHH
Confidence 4999999999999999999999876532 33344432 3788887741 11 0 2233333
Q ss_pred HHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccCCCCCCCccccCC
Q 044823 99 TSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHENVSSDSEYFKVP 178 (497)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 178 (497)
.... ....+.+++++ .+||++|+- .+..+..+|..+|+|+|.+.=....... .-.
T Consensus 67 ~~~~-R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~------------------~~L--- 121 (335)
T PF04007_consen 67 ESIE-RQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ------------------NRL--- 121 (335)
T ss_pred HHHH-HHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc------------------cee---
Confidence 3322 23345555566 799999975 4467778999999999997543221100 000
Q ss_pred CCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEE-ecchhhhhHHHHHHHHhhcCCceEEeCcCcCCCccchhh
Q 044823 179 GFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVI-INTFEELESASVKEYKNAKQGKVWCIGPVSLCNKESLDK 257 (497)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~ 257 (497)
.+|. ....-.|..+.. .++.++. .. ..+. ++++.++- ++=|..
T Consensus 122 t~Pl---a~~i~~P~~~~~----~~~~~~G---~~-~~i~~y~G~~E~a----------------yl~~F~--------- 165 (335)
T PF04007_consen 122 TLPL---ADVIITPEAIPK----EFLKRFG---AK-NQIRTYNGYKELA----------------YLHPFK--------- 165 (335)
T ss_pred ehhc---CCeeECCcccCH----HHHHhcC---Cc-CCEEEECCeeeEE----------------eecCCC---------
Confidence 0000 000001111100 0111100 00 1122 33332221 111211
Q ss_pred hhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCccc----CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchh
Q 044823 258 VERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICN----LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEE 333 (497)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~ 333 (497)
++++..+-+... +.+.|++-+-+... ...+.+..+++.|++.+..+|...+...+.. +-+
T Consensus 166 ---------Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~------~~~ 229 (335)
T PF04007_consen 166 ---------PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRE------LFE 229 (335)
T ss_pred ---------CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhh------HHh
Confidence 133333344322 34577777766443 2345567889999988887555544433211 111
Q ss_pred hHHHHhcCCCeee-ecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccc
Q 044823 334 NFEERIKGRGLLI-RGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVE 412 (497)
Q Consensus 334 ~~~~~~~~~nv~v-~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~ 412 (497)
.-++.+ ..-++-..+|.++++ +|+-|| ....||...|+|.|-+ ..++-...-+.+. +.|+ ....
T Consensus 230 -------~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gl--l~~~- 294 (335)
T PF04007_consen 230 -------KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGL--LYHS- 294 (335)
T ss_pred -------ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCC--eEec-
Confidence 112332 234555689999999 999888 7788999999999974 2223223334564 6665 2222
Q ss_pred cccccccccccccccCHHHHHHHHHHHh
Q 044823 413 VPMKFGEEEKIGVLVKKEDVETAINILM 440 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl 440 (497)
-+.+++.+.+.+.+
T Consensus 295 --------------~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 295 --------------TDPDEIVEYVRKNL 308 (335)
T ss_pred --------------CCHHHHHHHHHHhh
Confidence 36777777666544
No 79
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=9.1e-05 Score=71.98 Aligned_cols=327 Identities=14% Similarity=0.203 Sum_probs=187.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEe-CCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQH--GATATIVT-TPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
.+-+-.-+.|-++-.++|.++|.++ ++.|++-+ ++...+..++.. +..+....+|+|
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D-------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD-------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC--------------
Confidence 5666667899999999999999999 88888887 555555554442 223555554431
Q ss_pred CCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEE-EECC-CCcchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcc
Q 044823 87 MLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCI-ISDM-CIPWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKV 164 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~v-I~D~-~~~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~ 164 (497)
....+.++++. ++||++ |++. +.+....-+++.|+|.+.+.--
T Consensus 111 -----------------~~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR---------------- 155 (419)
T COG1519 111 -----------------LPIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR---------------- 155 (419)
T ss_pred -----------------chHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee----------------
Confidence 01145566777 899975 4666 4445677888999999985210
Q ss_pred cCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHHhhcC-CceEE
Q 044823 165 HENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYKNAKQ-GKVWC 243 (497)
Q Consensus 165 ~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~ 243 (497)
++.+....+ ..+..+.+. .+..-+.++.-+-..-+ - + ..++ +++..
T Consensus 156 ---------------------LS~rS~~~y---~k~~~~~~~---~~~~i~li~aQse~D~~--R---f-~~LGa~~v~v 202 (419)
T COG1519 156 ---------------------LSDRSFARY---AKLKFLARL---LFKNIDLILAQSEEDAQ--R---F-RSLGAKPVVV 202 (419)
T ss_pred ---------------------echhhhHHH---HHHHHHHHH---HHHhcceeeecCHHHHH--H---H-HhcCCcceEE
Confidence 000000000 001112222 22333445544432211 1 1 1122 44666
Q ss_pred eCcCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhC--CCCeEEEEeCCC
Q 044823 244 IGPVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWVSRVGN 321 (497)
Q Consensus 244 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~ 321 (497)
.|-+=-+........ ..-+.+...++.. ++ +.|..+|.. ...+.......++.+. +...||+=+-+.
T Consensus 203 ~GNlKfd~~~~~~~~-------~~~~~~r~~l~~~--r~-v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpE 271 (419)
T COG1519 203 TGNLKFDIEPPPQLA-------AELAALRRQLGGH--RP-VWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPE 271 (419)
T ss_pred ecceeecCCCChhhH-------HHHHHHHHhcCCC--Cc-eEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChh
Confidence 776533322110000 0012344444432 22 556666633 3444455556666543 344555533222
Q ss_pred chhhhhhhhchhhHHHHhcCC-----------------Ceeeecccc-hHhhhccCCc----cccccccCchhHHHHHHh
Q 044823 322 KLEELEKWLVEENFEERIKGR-----------------GLLIRGWAP-QVMILSHPAV----GGFLTHCGWNSSLEGISA 379 (497)
Q Consensus 322 ~~~~~~~~~lp~~~~~~~~~~-----------------nv~v~~~~p-q~~lL~~~~~----~~~ItHgG~gs~~eal~~ 379 (497)
.-. .+.+-.... +|++.+-+- ...+++-+++ +.++-+||+| ..|++++
T Consensus 272 Rf~---------~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~ 341 (419)
T COG1519 272 RFK---------AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAF 341 (419)
T ss_pred hHH---------HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHc
Confidence 111 111111122 444444432 2223333333 2367799987 6799999
Q ss_pred CCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 044823 380 GVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGEL 459 (497)
Q Consensus 380 GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 459 (497)
|+|+|.=|...-|.+.++++ ++.|.|+.++ +++.+.+++..+++|++..+.|.+++.++-+.
T Consensus 342 ~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~-----------------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 342 GTPVIFGPYTFNFSDIAERL-LQAGAGLQVE-----------------DADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred CCCEEeCCccccHHHHHHHH-HhcCCeEEEC-----------------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5999999995 36778999998888888888888888888877
Q ss_pred HHHH
Q 044823 460 AKRA 463 (497)
Q Consensus 460 ~~~~ 463 (497)
.+.+
T Consensus 404 ~~ga 407 (419)
T COG1519 404 NRGA 407 (419)
T ss_pred hhHH
Confidence 7744
No 80
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.63 E-value=8.8e-05 Score=74.12 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCCeeeecccch-HhhhccCCccccc--cc-cC-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFL--TH-CG-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~I--tH-gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.+++.+.++..+ ..+++.+++ +| ++ -| -+++.||+++|+|+|+-.. ..+...+ +.-..|..++..
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~~~~--- 323 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALVPPG--- 323 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEeCCC---
Confidence 345666665544 568888998 65 33 33 4689999999999999664 3355566 355667777654
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 324 ------------d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 324 ------------DAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78899999999998875555555555543
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.63 E-value=3.2e-05 Score=76.58 Aligned_cols=86 Identities=15% Similarity=0.026 Sum_probs=60.5
Q ss_pred CCCeeeecccch-HhhhccCCccccccc----cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.+++.+.++..+ ..++..+++ +|+- |--++++||+++|+|+|+....+ ....+ +. +.|......
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~~--- 316 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLDE--- 316 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCCC---
Confidence 467888888554 558888888 5542 33468999999999999855433 44455 35 555555333
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGR 449 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~ 449 (497)
+++++.++|.++++|++..+.+
T Consensus 317 ------------~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 317 ------------SPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred ------------CHHHHHHHHHHHHhCcchhhhh
Confidence 6799999999999998544433
No 82
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.62 E-value=0.00014 Score=72.91 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=86.7
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhC--CCCeEEEEeCCCchhhhhhhhchhhHHHH---hc--CCCeee-ecccch--
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWVSRVGNKLEELEKWLVEENFEER---IK--GRGLLI-RGWAPQ-- 352 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~---~~--~~nv~v-~~~~pq-- 352 (497)
.+++..|.... ..-+..++++++.. +.++++..++..... +-+.+... .. .+++.. .+++++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE------VAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH------HHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 35556676553 23455666666654 456555544432211 11111111 11 234553 457765
Q ss_pred -HhhhccCCcccccc---ccC-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccccccccccccccc
Q 044823 353 -VMILSHPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLV 427 (497)
Q Consensus 353 -~~lL~~~~~~~~It---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~ 427 (497)
..++..+++ +|. +-| -.+++||+++|+|+|+... ......+ +.-+.|..++..+. ...-
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~---------~~~~ 337 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNS---------DADG 337 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCC---------cccc
Confidence 446888888 664 223 3477999999999998654 4456666 46667888865510 0012
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 428 KKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 428 ~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
..+++.++|.++++|++..+.+.+++++.
T Consensus 338 ~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 366 (388)
T TIGR02149 338 FQAELAKAINILLADPELAKKMGIAGRKR 366 (388)
T ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 23889999999999876555666666554
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.60 E-value=0.00011 Score=72.81 Aligned_cols=138 Identities=20% Similarity=0.222 Sum_probs=77.5
Q ss_pred EEeeCCcccCCHhhHHHHHHHHHhCC--CCeEEEEeCCCchhhhhhhhchhhHHHH-hcCCCeeeecccchHh---hhcc
Q 044823 285 YVCLGSICNLTSSQLIELGLGLEASK--KPFIWVSRVGNKLEELEKWLVEENFEER-IKGRGLLIRGWAPQVM---ILSH 358 (497)
Q Consensus 285 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~v~~~~pq~~---lL~~ 358 (497)
++..|+... ...+..++++++... .++++. |....... +-..+.+. ...++|.+.+++++.. ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~iv-G~~~~~~~-----~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIV-GNADHNTP-----YGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEE-cCCCCcch-----HHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677653 233455666666553 454444 33211111 11112211 1357899999998854 5666
Q ss_pred CCcccccccc----Cc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHH
Q 044823 359 PAVGGFLTHC----GW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVE 433 (497)
Q Consensus 359 ~~~~~~ItHg----G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 433 (497)
+++ ++.+. |. +++.||+++|+|+|+....+ +...+ +. -|...... +. +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~---------------~~--l~ 321 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG---------------DD--LA 321 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc---------------hH--HH
Confidence 676 54433 33 47999999999999875432 22233 23 23333222 11 99
Q ss_pred HHHHHHhcCChhhHHHHHHHHHH
Q 044823 434 TAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 434 ~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
+++.++++|++..+.+.+++++.
T Consensus 322 ~~i~~l~~~~~~~~~~~~~~~~~ 344 (363)
T cd04955 322 SLLEELEADPEEVSAMAKAARER 344 (363)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999999875444555555443
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.59 E-value=7.5e-06 Score=81.51 Aligned_cols=133 Identities=20% Similarity=0.147 Sum_probs=84.1
Q ss_pred CeEEEEeeCCcccC-CHhhHHHHHHHHHhCCC-CeEEEEeCCCc-hhhhhhhhchhhHHHHhc--CCCeeeecccch---
Q 044823 281 SSVVYVCLGSICNL-TSSQLIELGLGLEASKK-PFIWVSRVGNK-LEELEKWLVEENFEERIK--GRGLLIRGWAPQ--- 352 (497)
Q Consensus 281 ~~vv~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~-~~~~~~~~lp~~~~~~~~--~~nv~v~~~~pq--- 352 (497)
+++|++++|..... ....+..++++++.... ++.+....+.. ... +-+ ...+.. .+|+.+.+..++
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~-----l~~-~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPR-----IRE-AGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHH-----HHH-HHHhhccCCCCEEEECCcCHHHH
Confidence 44788888876643 34567778888876533 24444433321 111 111 111121 467877766554
Q ss_pred HhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHH
Q 044823 353 VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDV 432 (497)
Q Consensus 353 ~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 432 (497)
..++..+++ ||+-.| |.+.||+++|+|+|+++.. |. +..+. +.|+++.+. -+.++|
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~----------------~~~~~i 327 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG----------------TDPEAI 327 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC----------------CCHHHH
Confidence 356777888 999999 7788999999999998743 22 33443 566665542 157889
Q ss_pred HHHHHHHhcCC
Q 044823 433 ETAINILMDDG 443 (497)
Q Consensus 433 ~~ai~~vl~~~ 443 (497)
.+++.++++|+
T Consensus 328 ~~~i~~ll~~~ 338 (363)
T cd03786 328 LAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHhcCc
Confidence 99999999876
No 85
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.58 E-value=9.4e-05 Score=74.73 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=76.7
Q ss_pred CCCeeeecccchHh---hhccCCcccccc--c-------cCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHccee
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFLT--H-------CGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGV 407 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~It--H-------gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~ 407 (497)
.+++.+.+|+|+.+ ++..+++ ||. + -|+ ++++||+++|+|+|+.... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 56899999999754 7888888 664 2 355 5689999999999987543 344455 3555777
Q ss_pred EeccccccccccccccccccCHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 044823 408 SVGVEVPMKFGEEEKIGVLVKKEDVETAINILMD-DGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRY 481 (497)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 481 (497)
..+.. +.+++.++|.++++ |++..+.+.+++++..+. .-+....+.++.+-+
T Consensus 351 lv~~~---------------d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~-------~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 351 LVPEN---------------DAQALAQRLAAFSQLDTDELAPVVKRAREKVET-------DFNQQVINRELASLL 403 (406)
T ss_pred EeCCC---------------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHH
Confidence 77654 78999999999998 875555666666544332 334445555554433
No 86
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.55 E-value=8.2e-05 Score=72.87 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=77.5
Q ss_pred EEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHh-cCCCeeeecccchH---hhhccC
Q 044823 284 VYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERI-KGRGLLIRGWAPQV---MILSHP 359 (497)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~---~lL~~~ 359 (497)
+.+..|.... ......+++++++.+.++++.-..... .. +-....... ..+++.+.+++++. .+++.+
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~-~~-----~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDP-DY-----FYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCH-HH-----HHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 3445566632 334456777788888776665443321 11 111111111 25789999999875 468888
Q ss_pred Ccccccc--ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHH
Q 044823 360 AVGGFLT--HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAI 436 (497)
Q Consensus 360 ~~~~~It--HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai 436 (497)
++-++-+ +-|+ .++.||+++|+|+|+.... .+...+ +.-..|...+ ..+++.+++
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~-----------------~~~~l~~~l 302 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD-----------------SVEELAAAV 302 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC-----------------CHHHHHHHH
Confidence 8833333 2454 4799999999999986553 334444 2333555542 278899999
Q ss_pred HHHhcC
Q 044823 437 NILMDD 442 (497)
Q Consensus 437 ~~vl~~ 442 (497)
.+++.+
T Consensus 303 ~~l~~~ 308 (335)
T cd03802 303 ARADRL 308 (335)
T ss_pred HHHhcc
Confidence 988753
No 87
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.55 E-value=5.4e-05 Score=74.90 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCCeeeecccch-HhhhccCCcccccccc---C-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~ItHg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.+|+.+.++..+ ..++..+++ +|.-. | -+++.||+++|+|+|+ .|...+...+ +. .|......
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~e~i-~~--~g~~~~~~--- 311 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVA----TDAGGVREVV-GD--SGLIVPIS--- 311 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEE----ecCCChhhEe-cC--CceEeCCC---
Confidence 467888888765 568888888 55422 2 4688999999999997 4555666666 35 44444433
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCC
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
+.+++.+++.+++++.
T Consensus 312 ------------~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 312 ------------DPEALANKIDEILKMS 327 (360)
T ss_pred ------------CHHHHHHHHHHHHhCC
Confidence 7889999999998543
No 88
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.52 E-value=8.6e-06 Score=79.38 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=84.7
Q ss_pred eEEEEeeCCcccCCHhhHHHHHHHHHhCCCC-eEEEEeCCCchhhhhhhhchhhHHHHhcC-CCeeeecccchHhhhccC
Q 044823 282 SVVYVCLGSICNLTSSQLIELGLGLEASKKP-FIWVSRVGNKLEELEKWLVEENFEERIKG-RGLLIRGWAPQVMILSHP 359 (497)
Q Consensus 282 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~lp~~~~~~~~~-~nv~v~~~~pq~~lL~~~ 359 (497)
++|.+--||-..--...+-.++++.+....+ ..+........+ .+.+.... ..+.+.+ .-.+++..+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~---------~i~~~~~~~~~~~~~~--~~~~~m~~a 236 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGK---------DLKEIYGDISEFEISY--DTHKALLEA 236 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHH---------HHHHHHhcCCCcEEec--cHHHHHHhh
Confidence 4888888987753334444444555433221 222222221111 11111111 2222322 335688999
Q ss_pred CccccccccCchhHHHHHHhCCcEeccCCcc--cchhhHHHHHH--HHcceeEecc----ccccccccccccccccCHHH
Q 044823 360 AVGGFLTHCGWNSSLEGISAGVQMLTWPLFT--DQFCNEKLIVE--VLRIGVSVGV----EVPMKFGEEEKIGVLVKKED 431 (497)
Q Consensus 360 ~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e--~~G~G~~l~~----~~~~~~~~~~~~~~~~~~~~ 431 (497)
++ +|+-.|-.|+ |++.+|+|+|+ +.-. =|..||+++.+ ..|+.-.+-. ++. =| |=..+.+|++.
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~v---vP-EllQ~~~t~~~ 308 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPL---HP-ELLQEFVTVEN 308 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCccccc---Cc-hhhcccCCHHH
Confidence 98 9999999999 99999999999 5433 56889999831 4444433311 000 00 00012689999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 044823 432 VETAINILMDDGEERDGRRRRAKEFGELA 460 (497)
Q Consensus 432 l~~ai~~vl~~~~~~~~~~~~a~~~~~~~ 460 (497)
|.+++.+. + .+.+++...++++.+
T Consensus 309 la~~i~~~-~----~~~~~~~~~~l~~~l 332 (347)
T PRK14089 309 LLKAYKEM-D----REKFFKKSKELREYL 332 (347)
T ss_pred HHHHHHHH-H----HHHHHHHHHHHHHHh
Confidence 99999772 1 225555555555543
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=0.0008 Score=71.76 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=65.1
Q ss_pred CCCeeeecccch-HhhhccCCcccccc---ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.++|.+.+|.++ ..++..+++ ||. +.|+ +++.||+.+|+|+|+.... .....+ +.-.-|+.++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 578999999876 458888888 664 5665 5889999999999997653 345556 355568888765
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
..+.+++.+++.+++++......+++++++.
T Consensus 643 ----------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 ----------TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred ----------CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 3566677777777665432222555555443
No 90
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.47 E-value=9.9e-05 Score=75.78 Aligned_cols=192 Identities=13% Similarity=0.046 Sum_probs=103.5
Q ss_pred cCCceEEeC-cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHH--hC--CC
Q 044823 237 KQGKVWCIG-PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE--AS--KK 311 (497)
Q Consensus 237 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~--~~--~~ 311 (497)
.+-++.+|| |+....+.. ....+..+-+.-.+++++|-+--||-.+--...+-.++++.+ .. +.
T Consensus 379 ~gv~v~yVGHPL~d~i~~~-----------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l 447 (608)
T PRK01021 379 SPLRTVYLGHPLVETISSF-----------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTH 447 (608)
T ss_pred cCCCeEEECCcHHhhcccC-----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCe
Confidence 367899999 886442210 012333333333334568888889876522334445555555 32 44
Q ss_pred CeEEEEeCCCchhhhhhhhchhhHHHHhcCCC---eeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCC
Q 044823 312 PFIWVSRVGNKLEELEKWLVEENFEERIKGRG---LLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~n---v~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 388 (497)
+++......... +.+.+.....+ +.+..--...++++.+++ .+.-.| .-++|+..+|+|||++=-
T Consensus 448 ~fvvp~a~~~~~---------~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK 515 (608)
T PRK01021 448 QLLVSSANPKYD---------HLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQ 515 (608)
T ss_pred EEEEecCchhhH---------HHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEe
Confidence 565543322111 11222121112 122210012578888888 777666 457899999999998543
Q ss_pred cc-cchhhHHHHHHHH----------cceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 389 FT-DQFCNEKLIVEVL----------RIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 389 ~~-DQ~~na~~~~e~~----------G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
.. =-...|+++. +. =+|..+-++ -.+ +.+.++++.|.+++ ++|.|++..+++++..++++
T Consensus 516 ~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPE---llq----gQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 516 LRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPE---FIG----GKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLY 586 (608)
T ss_pred cCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchh---hcC----CcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHH
Confidence 22 2234566665 31 112111111 000 00258999999997 88888866667777777777
Q ss_pred HHH
Q 044823 458 ELA 460 (497)
Q Consensus 458 ~~~ 460 (497)
+.+
T Consensus 587 ~~L 589 (608)
T PRK01021 587 QAM 589 (608)
T ss_pred HHh
Confidence 664
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.46 E-value=4.4e-05 Score=75.50 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=64.1
Q ss_pred cCCCeeeecccchH---hhhccCCccccccc----cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccc
Q 044823 340 KGRGLLIRGWAPQV---MILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVE 412 (497)
Q Consensus 340 ~~~nv~v~~~~pq~---~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~ 412 (497)
..+++.+.+|+|+. .++..+++ +|.- |.-+++.||+++|+|+|+... ......+ ++ .|..+...
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~-~~--~~~~~~~~ 321 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNI----SSLPEVA-GD--AALYFDPL 321 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCC----CCcccee-cC--ceeeeCCC
Confidence 36789999999875 46788887 5432 223589999999999998544 2222233 23 24444433
Q ss_pred cccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 413 VPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
+.+++.+++.++++|++....+.+++++..
T Consensus 322 ---------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 351 (365)
T cd03809 322 ---------------DPEALAAAIERLLEDPALREELRERGLARA 351 (365)
T ss_pred ---------------CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 788999999999999866666666665433
No 92
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.44 E-value=0.00081 Score=71.92 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=60.1
Q ss_pred CCCeeeeccc-ch---Hhhhcc----CCcccccc---ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeE
Q 044823 341 GRGLLIRGWA-PQ---VMILSH----PAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVS 408 (497)
Q Consensus 341 ~~nv~v~~~~-pq---~~lL~~----~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~ 408 (497)
.++|.+.++. +. ..++.+ +++ ||. .=|+ .++.||+++|+|+|+.-. ...+..+ +.-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 4677777764 32 234432 234 663 3344 489999999999998543 4456667 36666888
Q ss_pred eccccccccccccccccccCHHHHHHHHHHHh----cCChhhHHHHHHHHH
Q 044823 409 VGVEVPMKFGEEEKIGVLVKKEDVETAINILM----DDGEERDGRRRRAKE 455 (497)
Q Consensus 409 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl----~~~~~~~~~~~~a~~ 455 (497)
++.. +++++.++|.+++ +|++..+.+.+++++
T Consensus 691 Vdp~---------------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 691 IDPY---------------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred eCCC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8655 7788888888765 577555566665543
No 93
>PLN02275 transferase, transferring glycosyl groups
Probab=98.43 E-value=0.0015 Score=65.19 Aligned_cols=122 Identities=11% Similarity=-0.018 Sum_probs=68.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGA-TATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
+-|+.++..+-.|.-..+..++..|+++|| +|++++.+.... ..+.. ...+++.+.++.+ ......
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~-~~~~~-----~~~~v~v~r~~~~-------~~~~~~ 70 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEP-IPALL-----NHPSIHIHLMVQP-------RLLQRL 70 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCC-CHHHh-----cCCcEEEEECCCc-------cccccc
Confidence 446777777889999999999999999986 799998754322 22221 2346888876521 111011
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHH-HhhcCCCCeEEEECC-CCc----chHHHHHHcCCCeEEE
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENL-FREQTPQPCCIISDM-CIP----WTVDTAAKFNVPRIIF 145 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~D~vI~D~-~~~----~a~~~A~~lgIP~i~~ 145 (497)
. .....+..+......+...+..+ .+. .+||+|++.. ... .+..++...++|++..
T Consensus 71 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~ 132 (371)
T PLN02275 71 P--RVLYALALLLKVAIQFLMLLWFLCVKI--PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVID 132 (371)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHHHHhhC--CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEE
Confidence 0 01111111111112222222222 344 7999998753 322 2345667789999874
No 94
>PLN02949 transferase, transferring glycosyl groups
Probab=98.38 E-value=0.0014 Score=66.98 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=61.7
Q ss_pred CCCeeeecccchHh---hhccCCcccccc---ccCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHH-c-ceeEecc
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVL-R-IGVSVGV 411 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~-G-~G~~l~~ 411 (497)
.++|.+.+++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+--. ..+.+.. | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 57899999998644 6778877 662 34444 7999999999999987543110 1110000 1 12211
Q ss_pred ccccccccccccccccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHH
Q 044823 412 EVPMKFGEEEKIGVLVKKEDVETAINILMDD-GEERDGRRRRAKEFGEL 459 (497)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~~~~~ 459 (497)
-+.+++.++|.+++++ ++..+.+.+++++..+.
T Consensus 407 ---------------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 407 ---------------TTVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred ---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2678999999999984 44455666666654433
No 95
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.33 E-value=8.5e-06 Score=80.00 Aligned_cols=252 Identities=15% Similarity=0.116 Sum_probs=126.4
Q ss_pred HHHHhchHHHHHHHhhcCCCCeEEE--ECCCC-cchHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccCCCCCCCccc
Q 044823 99 TSLQKLQLPFENLFREQTPQPCCII--SDMCI-PWTVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHENVSSDSEYF 175 (497)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~~~~D~vI--~D~~~-~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (497)
..+..+...+.+.++. .+||+|| .|.+. .++..+|..++||.+-+..+. .+ .+..
T Consensus 50 ~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl-Rs------------------~d~~- 107 (346)
T PF02350_consen 50 KSTGLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL-RS------------------GDRT- 107 (346)
T ss_dssp HHHHHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES------------------------S-TT-
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC-Cc------------------cccC-
Confidence 3444566777888887 7999876 56665 577899999999977653220 00 0000
Q ss_pred cCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHHHH-hhc-CCceEEeCcCcCCCcc
Q 044823 176 KVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKEYK-NAK-QGKVWCIGPVSLCNKE 253 (497)
Q Consensus 176 ~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~-~~~-~~~~~~vGp~~~~~~~ 253 (497)
-|++ .+..+.... +-++..+..+-...+ .+. ... +.+++.||....+.-.
T Consensus 108 --~g~~-------------------de~~R~~i~--~la~lhf~~t~~~~~-----~L~~~G~~~~rI~~vG~~~~D~l~ 159 (346)
T PF02350_consen 108 --EGMP-------------------DEINRHAID--KLAHLHFAPTEEARE-----RLLQEGEPPERIFVVGNPGIDALL 159 (346)
T ss_dssp --SSTT-------------------HHHHHHHHH--HH-SEEEESSHHHHH-----HHHHTT--GGGEEE---HHHHHHH
T ss_pred --CCCc-------------------hhhhhhhhh--hhhhhhccCCHHHHH-----HHHhcCCCCCeEEEEChHHHHHHH
Confidence 0111 122222222 223444555433222 111 111 3688999965444321
Q ss_pred chhhhhcCCCCCCChhhh--hhhhccCCCCeEEEEeeCCcccCC-H---hhHHHHHHHHHhC-CCCeEEEEeCCCchhhh
Q 044823 254 SLDKVERGNKAAIDIPEC--LTWLDSQQPSSVVYVCLGSICNLT-S---SQLIELGLGLEAS-KKPFIWVSRVGNKLEEL 326 (497)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~vv~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~ 326 (497)
.... . ..+.. ..++.. .+++.++|++=...... + ..+..+++++... +.++||.+.......
T Consensus 160 ~~~~--~------~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~-- 228 (346)
T PF02350_consen 160 QNKE--E------IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS-- 228 (346)
T ss_dssp HHHH--T------TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH--
T ss_pred HhHH--H------HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH--
Confidence 1000 0 01111 123222 45679999995555544 3 3444556666655 778999986432211
Q ss_pred hhhhchhhHHHHhc-CCCeeeecccc---hHhhhccCCccccccccCchhHH-HHHHhCCcEeccCCcccchhhHHHHHH
Q 044823 327 EKWLVEENFEERIK-GRGLLIRGWAP---QVMILSHPAVGGFLTHCGWNSSL-EGISAGVQMLTWPLFTDQFCNEKLIVE 401 (497)
Q Consensus 327 ~~~~lp~~~~~~~~-~~nv~v~~~~p---q~~lL~~~~~~~~ItHgG~gs~~-eal~~GvP~l~~P~~~DQ~~na~~~~e 401 (497)
..+.+.+. -+|+.+.+-++ ...+|.++++ +||..| ++. ||.+.|+|.|.+=..++.+ .-.
T Consensus 229 ------~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRq---e~r-- 293 (346)
T PF02350_consen 229 ------DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQ---EGR-- 293 (346)
T ss_dssp ------HHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-H---HHH--
T ss_pred ------HHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCH---HHH--
Confidence 11222221 14888876665 4668889998 999999 566 9999999999992222222 111
Q ss_pred HHcceeEeccccccccccccccccccCHHHHHHHHHHHhcC
Q 044823 402 VLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDD 442 (497)
Q Consensus 402 ~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 442 (497)
..|-.+.+ . .++++|.+++.+++++
T Consensus 294 ~~~~nvlv--~--------------~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 294 ERGSNVLV--G--------------TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HTTSEEEE--T--------------SSHHHHHHHHHHHHH-
T ss_pred hhcceEEe--C--------------CCHHHHHHHHHHHHhC
Confidence 23333332 2 6899999999999975
No 96
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.31 E-value=2.1e-06 Score=70.19 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=77.8
Q ss_pred EEEEeeCCcccCC---HhhHHHHHHHHHhCCC-CeEEEEeCCCchhhhhhhhchhhHHHHhcCCCee--eecccch-Hhh
Q 044823 283 VVYVCLGSICNLT---SSQLIELGLGLEASKK-PFIWVSRVGNKLEELEKWLVEENFEERIKGRGLL--IRGWAPQ-VMI 355 (497)
Q Consensus 283 vv~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~--v~~~~pq-~~l 355 (497)
.+||+-||....+ .-.-.+..+.|.+.|. +.+...|.+..- .+.....-.+..++. ..+|-|- .+.
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 7999999988621 1112345566667776 677888877321 232222221233433 4456775 556
Q ss_pred hccCCccccccccCchhHHHHHHhCCcEeccCC----cccchhhHHHHHHHHccee
Q 044823 356 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL----FTDQFCNEKLIVEVLRIGV 407 (497)
Q Consensus 356 L~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~~~e~~G~G~ 407 (497)
...+++ +|+|+|.||++|.|..|+|.|+++- -..|-..|..++ +.|.=.
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~ 130 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLY 130 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEE
Confidence 666888 9999999999999999999999995 347889999996 666533
No 97
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.30 E-value=0.0027 Score=63.36 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCeeeeccc--ch---HhhhccCCcccccccc---Cc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecc
Q 044823 341 GRGLLIRGWA--PQ---VMILSHPAVGGFLTHC---GW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGV 411 (497)
Q Consensus 341 ~~nv~v~~~~--pq---~~lL~~~~~~~~ItHg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~ 411 (497)
.+++.+.++. ++ ..+++.+++ |+.-. |+ .++.||+++|+|+|+.... .....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4567777776 33 347788888 77533 33 4899999999999986543 334445 3555666442
Q ss_pred ccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 412 EVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
+.+++..+|.++++|++..+.+.+++++..
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~ 352 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANAREHV 352 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 345677799999988755566666665543
No 98
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.29 E-value=0.00046 Score=67.85 Aligned_cols=206 Identities=17% Similarity=0.102 Sum_probs=103.4
Q ss_pred cCCceEEeC-cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHh-----CC
Q 044823 237 KQGKVWCIG-PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA-----SK 310 (497)
Q Consensus 237 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~-----~~ 310 (497)
.+-++.||| |+........ .+....+.+ -.+++++|.+--||-..--...+-.++++.+. .+
T Consensus 151 ~g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~ 218 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPD 218 (373)
T ss_pred cCCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346799999 8864332210 123333333 22345689998998765222333334444432 35
Q ss_pred CCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeee-cccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCc
Q 044823 311 KPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIR-GWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 389 (497)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~-~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~ 389 (497)
.++++............ ..... ...++.+. ..-.-.++|..+++ .+.-.| ..++|+..+|+|||++=-.
T Consensus 219 l~fvvp~a~~~~~~~i~------~~~~~-~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 219 LQFVVPVAPEVHEELIE------EILAE-YPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKV 288 (373)
T ss_pred eEEEEecCCHHHHHHHH------HHHHh-hCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcC
Confidence 56666654332111000 01111 12222222 12234567888887 555555 4678999999999987543
Q ss_pred c-cchhhHHHHHHHHcceeEeccc-cccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhC
Q 044823 390 T-DQFCNEKLIVEVLRIGVSVGVE-VPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEG 467 (497)
Q Consensus 390 ~-DQ~~na~~~~e~~G~G~~l~~~-~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~ 467 (497)
. =....|+++. +... +.+..- -....=| |=.-+..+++.|.+++.++|+|++. ++..+...+.+++....|
T Consensus 289 ~~lt~~iak~lv-k~~~-isL~Niia~~~v~P-EliQ~~~~~~~i~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~ 361 (373)
T PF02684_consen 289 SPLTYFIAKRLV-KVKY-ISLPNIIAGREVVP-ELIQEDATPENIAAELLELLENPEK----RKKQKELFREIRQLLGPG 361 (373)
T ss_pred cHHHHHHHHHhh-cCCE-eechhhhcCCCcch-hhhcccCCHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHhhhhc
Confidence 2 2344666665 3332 222100 0000000 0001368999999999999998743 444444444444443445
Q ss_pred CChH
Q 044823 468 GSSY 471 (497)
Q Consensus 468 g~~~ 471 (497)
.++.
T Consensus 362 ~~~~ 365 (373)
T PF02684_consen 362 ASSR 365 (373)
T ss_pred cCCH
Confidence 4433
No 99
>PLN00142 sucrose synthase
Probab=98.24 E-value=0.0013 Score=70.46 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=48.8
Q ss_pred ccc---ccCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHH-
Q 044823 364 FLT---HCGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINI- 438 (497)
Q Consensus 364 ~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~- 438 (497)
||. +-|+| ++.||+++|+|+|+... ......+ +.-.-|..++.. +.+++.++|.+
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV~P~---------------D~eaLA~aI~~l 729 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHIDPY---------------HGDEAANKIADF 729 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeCCC---------------CHHHHHHHHHHH
Confidence 664 35555 89999999999998543 4455566 355568888755 66777777655
Q ss_pred ---HhcCChhhHHHHHHHHH
Q 044823 439 ---LMDDGEERDGRRRRAKE 455 (497)
Q Consensus 439 ---vl~~~~~~~~~~~~a~~ 455 (497)
+++|++..+.+.+++++
T Consensus 730 LekLl~Dp~lr~~mg~~Ar~ 749 (815)
T PLN00142 730 FEKCKEDPSYWNKISDAGLQ 749 (815)
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 45777666666666544
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.21 E-value=0.00012 Score=72.36 Aligned_cols=139 Identities=10% Similarity=0.125 Sum_probs=90.8
Q ss_pred EEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchH---hhhccCC
Q 044823 284 VYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQV---MILSHPA 360 (497)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~lL~~~~ 360 (497)
.++..|+... ...+..++++++..+.++++.-.+. .. +.+.+ ...+||.+.+++|+. .+++.++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~-~~---------~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP-EL---------DRLRA-KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh-hH---------HHHHh-hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 3455666553 3446677888887777766554332 11 12222 236899999999974 4788888
Q ss_pred ccccccccCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHH
Q 044823 361 VGGFLTHCGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINIL 439 (497)
Q Consensus 361 ~~~~ItHgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v 439 (497)
+-++-+.-|+| ++.||+++|+|+|+....+ ....+ +.-+.|..++.. +.+++.++|.++
T Consensus 264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~---------------~~~~la~~i~~l 323 (351)
T cd03804 264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ---------------TVESLAAAVERF 323 (351)
T ss_pred EEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC---------------CHHHHHHHHHHH
Confidence 83333444554 6789999999999976533 34445 366678887655 788899999999
Q ss_pred hcCC-hhhHHHHHHHHH
Q 044823 440 MDDG-EERDGRRRRAKE 455 (497)
Q Consensus 440 l~~~-~~~~~~~~~a~~ 455 (497)
++|+ +.++.+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~ 340 (351)
T cd03804 324 EKNEDFDPQAIRAHAER 340 (351)
T ss_pred HhCcccCHHHHHHHHHh
Confidence 9887 334444444443
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.19 E-value=0.0032 Score=63.89 Aligned_cols=81 Identities=17% Similarity=0.054 Sum_probs=54.6
Q ss_pred CCCeeeecccchH---hhhccCCccccccc---cCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHH---HHcceeEec
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVE---VLRIGVSVG 410 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e---~~G~G~~l~ 410 (497)
.++|.+.+++|+. .+|..+++ +|+- =|+ .++.||+++|+|+|+.-..+.- ...+ + .-+.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe-
Confidence 4689999999864 47888887 5531 233 3889999999999986543211 1122 2 23455542
Q ss_pred cccccccccccccccccCHHHHHHHHHHHhcCCh
Q 044823 411 VEVPMKFGEEEKIGVLVKKEDVETAINILMDDGE 444 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 444 (497)
. +++++.++|.+++++++
T Consensus 377 -~---------------d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 -S---------------TAEEYAEAIEKILSLSE 394 (419)
T ss_pred -C---------------CHHHHHHHHHHHHhCCH
Confidence 2 68899999999998763
No 102
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.12 E-value=0.00096 Score=66.26 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=80.1
Q ss_pred CeEEEEeeCCcc--c-CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhc-CCCeeeecccc---hH
Q 044823 281 SSVVYVCLGSIC--N-LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIK-GRGLLIRGWAP---QV 353 (497)
Q Consensus 281 ~~vv~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~p---q~ 353 (497)
++.|+|++=... . ...+.+..+++++...+.++++.......... . +-+.+..... .+|+.+.+-++ ..
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~--~--i~~~i~~~~~~~~~v~l~~~l~~~~~l 276 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSR--I--INEAIEEYVNEHPNFRLFKSLGQERYL 276 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCch--H--HHHHHHHHhcCCCCEEEECCCChHHHH
Confidence 358888885443 2 34677899999998887666666533221100 0 1111111111 46788876544 56
Q ss_pred hhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHH
Q 044823 354 MILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVE 433 (497)
Q Consensus 354 ~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 433 (497)
.++.++++ +||.++.|- .||.+.|+|.|.+- +.+ ... +.|-.+.+ .. .++++|.
T Consensus 277 ~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~-~~g~nvl~-vg--------------~~~~~I~ 330 (365)
T TIGR03568 277 SLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGR-LRADSVID-VD--------------PDKEEIV 330 (365)
T ss_pred HHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhh-hhcCeEEE-eC--------------CCHHHHH
Confidence 68889998 999886555 99999999999764 322 110 22322221 12 5789999
Q ss_pred HHHHHHhc
Q 044823 434 TAINILMD 441 (497)
Q Consensus 434 ~ai~~vl~ 441 (497)
+++.++++
T Consensus 331 ~a~~~~~~ 338 (365)
T TIGR03568 331 KAIEKLLD 338 (365)
T ss_pred HHHHHHhC
Confidence 99999653
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.07 E-value=0.0062 Score=62.83 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=71.5
Q ss_pred EEEEeeCCccc-CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCee-eecccch--Hhhhcc
Q 044823 283 VVYVCLGSICN-LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLL-IRGWAPQ--VMILSH 358 (497)
Q Consensus 283 vv~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~-v~~~~pq--~~lL~~ 358 (497)
.+++..|.... ...+.+...++-+...+.++++. |.+... ..+. + ..+.++. +.++. ..+|-.+ ..+++.
T Consensus 283 ~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~~~--~~~~-l-~~l~~~~-~~~v~~~~g~~~~~~~~~~~~ 356 (466)
T PRK00654 283 PLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGDPE--LEEA-F-RALAARY-PGKVGVQIGYDEALAHRIYAG 356 (466)
T ss_pred cEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCcHH--HHHH-H-HHHHHHC-CCcEEEEEeCCHHHHHHHHhh
Confidence 35566676653 22333333333333346676666 332211 0000 1 1122222 34554 3455333 246788
Q ss_pred CCcccccc---ccCch-hHHHHHHhCCcEeccCCcccchhhHHHHH-----HHHcceeEeccccccccccccccccccCH
Q 044823 359 PAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIV-----EVLRIGVSVGVEVPMKFGEEEKIGVLVKK 429 (497)
Q Consensus 359 ~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~-----e~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 429 (497)
+++ ||. +-|+| +.+||+.+|+|.|+.-..+ ....+. +..+-|...+.. ++
T Consensus 357 aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~lv~~~---------------d~ 415 (466)
T PRK00654 357 ADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGFVFDDF---------------NA 415 (466)
T ss_pred CCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceEEeCCC---------------CH
Confidence 888 663 34554 8889999999999865432 122221 122678877654 78
Q ss_pred HHHHHHHHHHhc
Q 044823 430 EDVETAINILMD 441 (497)
Q Consensus 430 ~~l~~ai~~vl~ 441 (497)
+++.++|.++++
T Consensus 416 ~~la~~i~~~l~ 427 (466)
T PRK00654 416 EDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 104
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.06 E-value=0.0091 Score=60.60 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=50.8
Q ss_pred eeecccchHhhhccCCcccccccc----CchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccc
Q 044823 345 LIRGWAPQVMILSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEE 420 (497)
Q Consensus 345 ~v~~~~pq~~lL~~~~~~~~ItHg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~ 420 (497)
++.++.+...+++..++ ||.=+ =-+++.||+++|+|+|+.-..+ + ..+ +.-+-|... .
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~--~-------- 348 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY--D-------- 348 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec--C--------
Confidence 35566666778888887 88653 2468899999999999976543 2 334 233333333 2
Q ss_pred cccccccCHHHHHHHHHHHhcCC
Q 044823 421 EKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 421 ~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
+.+++.+++.++|+++
T Consensus 349 -------~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 349 -------DGKGFVRATLKALAEE 364 (462)
T ss_pred -------CHHHHHHHHHHHHccC
Confidence 5678999999998753
No 105
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.05 E-value=0.0007 Score=67.54 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCCeeeecccch-HhhhccCCcccccccc-C-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLTHC-G-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKF 417 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~ItHg-G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~ 417 (497)
.+++.+.++.++ ..++..+++-++.++. | ..+++||+++|+|+|+..... .....+ +.-..|..++..
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~~----- 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPKG----- 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCCC-----
Confidence 457888887766 4588888885555543 3 358999999999999865432 134455 366677777654
Q ss_pred ccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 044823 418 GEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAK 461 (497)
Q Consensus 418 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~ 461 (497)
+.+++.++|.++++|++..+.+.++|++.++.+.
T Consensus 331 ----------d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 331 ----------DIEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred ----------cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999998777777777777655443
No 106
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.98 E-value=0.0002 Score=72.51 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=96.8
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHh---C--CCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHh---
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEA---S--KKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVM--- 354 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~--- 354 (497)
..++++|..... ..+..+++++.. . +..+.|..-++.... .. +-.-.......+++.+.+|+++.+
T Consensus 231 ~~il~~Grl~~~--Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~--~~--l~~~~~~~~~~~~V~f~G~v~~~e~~~ 304 (407)
T cd04946 231 LRIVSCSYLVPV--KRVDLIIKALAALAKARPSIKIKWTHIGGGPLE--DT--LKELAESKPENISVNFTGELSNSEVYK 304 (407)
T ss_pred EEEEEeeccccc--cCHHHHHHHHHHHHHhCCCceEEEEEEeCchHH--HH--HHHHHHhcCCCceEEEecCCChHHHHH
Confidence 456667776642 223444444443 2 246666644433211 11 111111111245788999999764
Q ss_pred hhccCCcccccccc---C-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHH
Q 044823 355 ILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKE 430 (497)
Q Consensus 355 lL~~~~~~~~ItHg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 430 (497)
++..+++.+||... | -++++||+++|+|+|+.. -......+ +..+.|..+... -+.+
T Consensus 305 ~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~~~--------------~~~~ 365 (407)
T cd04946 305 LYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLSKD--------------PTPN 365 (407)
T ss_pred HHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeCCC--------------CCHH
Confidence 45444444476544 3 358999999999999854 34456666 365578877543 4789
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 044823 431 DVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFH 478 (497)
Q Consensus 431 ~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 478 (497)
++.++|.++++|++..+.++++|++.-+. .-+.+....+|+
T Consensus 366 ~la~~I~~ll~~~~~~~~m~~~ar~~~~~-------~f~~~~~~~~~~ 406 (407)
T cd04946 366 ELVSSLSKFIDNEEEYQTMREKAREKWEE-------NFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHhHHHhc
Confidence 99999999999886666666666555433 445455555553
No 107
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.97 E-value=8.4e-05 Score=65.27 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=71.1
Q ss_pred CCCeeeecccc--h-HhhhccCCccccccc----cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccc
Q 044823 341 GRGLLIRGWAP--Q-VMILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEV 413 (497)
Q Consensus 341 ~~nv~v~~~~p--q-~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~ 413 (497)
.+++.+.++++ + ..++..+++ +|+. |.-.++.||+++|+|+|+ .|...+...+ +..+.|...+..
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~-~~~~~g~~~~~~- 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEII-NDGVNGFLFDPN- 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHS-GTTTSEEEESTT-
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceee----ccccCCceee-ccccceEEeCCC-
Confidence 56888889997 3 558888888 7765 455699999999999997 4566666677 477778888644
Q ss_pred ccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044823 414 PMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKE 455 (497)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 455 (497)
+.+++.++|.++++|++..+.+.+++++
T Consensus 144 --------------~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 144 --------------DIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp --------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 8999999999999988667777777765
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.96 E-value=0.015 Score=60.11 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=71.6
Q ss_pred EEEEeeCCccc-CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHh--cCCCeeeecccchH---hhh
Q 044823 283 VVYVCLGSICN-LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERI--KGRGLLIRGWAPQV---MIL 356 (497)
Q Consensus 283 vv~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~---~lL 356 (497)
.+++..|.... ...+.+...++.+.+.+.++++.-.+... ..+.+.+.. ..+|+.+....++. .++
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPE--------YEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHH--------HHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 35566676653 22333444444444445565555433211 111122111 14677654333332 367
Q ss_pred ccCCccccccc---cCc-hhHHHHHHhCCcEeccCCcc--cchhhHHHHHHHHcceeEeccccccccccccccccccCHH
Q 044823 357 SHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFT--DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKE 430 (497)
Q Consensus 357 ~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 430 (497)
+.+++ ++.- -|+ .+.+||+++|+|+|+....+ |.-.+.... .+.|.|...+.. +++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~~---------------~~~ 430 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEGY---------------NAD 430 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCCC---------------CHH
Confidence 78887 6532 233 37789999999999865533 221111111 134477777654 789
Q ss_pred HHHHHHHHHhc
Q 044823 431 DVETAINILMD 441 (497)
Q Consensus 431 ~l~~ai~~vl~ 441 (497)
++.+++.++++
T Consensus 431 ~l~~~i~~~l~ 441 (476)
T cd03791 431 ALLAALRRALA 441 (476)
T ss_pred HHHHHHHHHHH
Confidence 99999999885
No 109
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.89 E-value=0.036 Score=57.34 Aligned_cols=131 Identities=9% Similarity=-0.000 Sum_probs=73.6
Q ss_pred EEEEeeCCccc-CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchH---hhhcc
Q 044823 283 VVYVCLGSICN-LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQV---MILSH 358 (497)
Q Consensus 283 vv~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~---~lL~~ 358 (497)
.+++..|.... ...+.+.+.+..+.+.+.++++.-.+.... ... + ..+..+ .+.++.+....++. .+++.
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~--~~~--l-~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ 365 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPEL--EEA--L-RELAER-YPGNVRVIIGYDEALAHLIYAG 365 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHH--HHH--H-HHHHHH-CCCcEEEEEcCCHHHHHHHHHh
Confidence 35566676664 233344444444444456666553332110 001 1 112222 24566665555543 47788
Q ss_pred CCcccccc---ccCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHH------cceeEeccccccccccccccccccC
Q 044823 359 PAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVL------RIGVSVGVEVPMKFGEEEKIGVLVK 428 (497)
Q Consensus 359 ~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~------G~G~~l~~~~~~~~~~~~~~~~~~~ 428 (497)
+++ +|. +-|+| +.+||+++|+|.|+....+ ....+ +.. +.|...+.. +
T Consensus 366 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~~---------------d 423 (473)
T TIGR02095 366 ADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEEY---------------D 423 (473)
T ss_pred CCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCCC---------------C
Confidence 888 663 23444 7889999999999865532 22233 132 677777644 7
Q ss_pred HHHHHHHHHHHhc
Q 044823 429 KEDVETAINILMD 441 (497)
Q Consensus 429 ~~~l~~ai~~vl~ 441 (497)
++++.++|.+++.
T Consensus 424 ~~~la~~i~~~l~ 436 (473)
T TIGR02095 424 PGALLAALSRALR 436 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999886
No 110
>PLN02316 synthase/transferase
Probab=97.87 E-value=0.058 Score=59.75 Aligned_cols=119 Identities=15% Similarity=0.054 Sum_probs=70.6
Q ss_pred CCCeeeecccchH---hhhccCCccccccc---cCc-hhHHHHHHhCCcEeccCCcc--cchhhH----HHH--HHHHcc
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFT--DQFCNE----KLI--VEVLRI 405 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na----~~~--~e~~G~ 405 (497)
++++.+....+.. .+++.+++ |+.- =|+ .+.+||+++|+|.|+....+ |.-... .+. ...-+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3466665444543 57888888 7742 233 48899999999888765432 221111 000 001245
Q ss_pred eeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 044823 406 GVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYH 482 (497)
Q Consensus 406 G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 482 (497)
|...+. .+++.|..+|.+++.+ |......++...+++++..-+-...+.+.++-+.
T Consensus 977 Gflf~~---------------~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 977 GFSFDG---------------ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred eEEeCC---------------CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 666654 4889999999999963 3344455666666665556665555556555443
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.83 E-value=0.00048 Score=69.14 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=84.9
Q ss_pred CCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHH-HhcCCCeeeecccchHhhh--
Q 044823 280 PSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEE-RIKGRGLLIRGWAPQVMIL-- 356 (497)
Q Consensus 280 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~v~~~~pq~~lL-- 356 (497)
+..++|.||......+++.+..-.+-|++.+...+|....+.... .. +-..+.+ .+.++.+.+.++.++.+.|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~--~~--l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE--AR--LRRRFAAHGVDPDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH--HH--HHHHHHHTTS-GGGEEEEE---HHHHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH--HH--HHHHHHHcCCChhhEEEcCCCCHHHHHHH
Confidence 345999999999999999999999999999999999987653221 11 2222222 1245778888888765544
Q ss_pred -ccCCccccc---cccCchhHHHHHHhCCcEeccCCcc-cchhhHHHHHHHHcceeEeccccccccccccccccccCHHH
Q 044823 357 -SHPAVGGFL---THCGWNSSLEGISAGVQMLTWPLFT-DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKED 431 (497)
Q Consensus 357 -~~~~~~~~I---tHgG~gs~~eal~~GvP~l~~P~~~-DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (497)
...++ ++ ..+|..|++|||+.|||+|.+|--. =...-|..+ ..+|+.-.+- .+.++
T Consensus 359 ~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA----------------~s~~e 419 (468)
T PF13844_consen 359 YQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA----------------DSEEE 419 (468)
T ss_dssp GGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-----------------SSHHH
T ss_pred hhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC----------------CCHHH
Confidence 44555 43 4678899999999999999999533 223445566 4788775442 34555
Q ss_pred HHHHHHHHhcCChhhHHHHHHH
Q 044823 432 VETAINILMDDGEERDGRRRRA 453 (497)
Q Consensus 432 l~~ai~~vl~~~~~~~~~~~~a 453 (497)
-.+..-++-+|++..+.+|++.
T Consensus 420 Yv~~Av~La~D~~~l~~lR~~L 441 (468)
T PF13844_consen 420 YVEIAVRLATDPERLRALRAKL 441 (468)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 4444445666764444444333
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.79 E-value=0.0096 Score=61.56 Aligned_cols=95 Identities=22% Similarity=0.195 Sum_probs=68.0
Q ss_pred CCCeeeecccchHhhhccCCcccccccc---C-chhHHHHHHhCCcEeccCCcccchhhHHHHHHHH------cceeEec
Q 044823 341 GRGLLIRGWAPQVMILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVL------RIGVSVG 410 (497)
Q Consensus 341 ~~nv~v~~~~pq~~lL~~~~~~~~ItHg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~------G~G~~l~ 410 (497)
.+||.+.+...-..+++.+++ +|.-. | -+++.||+++|+|+|+- |.......+ +.. ..|...+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 478888886666778888888 55332 3 36899999999999984 444455555 352 2677775
Q ss_pred cccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 411 VEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
.. +.+++.++|.++++|++..+.+.+++++..
T Consensus 426 ~~---------------d~~~la~ai~~ll~~~~~~~~~~~~a~~~v 457 (475)
T cd03813 426 PA---------------DPEALARAILRLLKDPELRRAMGEAGRKRV 457 (475)
T ss_pred CC---------------CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 44 789999999999999866666666665433
No 113
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.78 E-value=0.013 Score=60.60 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=70.3
Q ss_pred CCCeeeecccchHhhhccCCcccccc---ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccc
Q 044823 341 GRGLLIRGWAPQVMILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMK 416 (497)
Q Consensus 341 ~~nv~v~~~~pq~~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~ 416 (497)
.++|...++.+...++..+++ ||. .-|+ .+++||+++|+|+|+.-..+ .+...+ +.-.-|..++...
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~--- 445 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDE--- 445 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCc---
Confidence 467888898888889999988 664 3454 48999999999999966431 234455 3545576665220
Q ss_pred cccccccccccC-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 044823 417 FGEEEKIGVLVK-KEDVETAINILMDDGEERDGRRRRAKEFGELAK 461 (497)
Q Consensus 417 ~~~~~~~~~~~~-~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~ 461 (497)
++ ++.-+ .++++++|.++++ ++..+.+.++|++.++.+.
T Consensus 446 ---~~--~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 446 ---EE--DDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred ---cc--cchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcC
Confidence 00 00112 7889999999995 4456677777777655543
No 114
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00025 Score=57.17 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=72.9
Q ss_pred EEEeeCCcccCCHhhHH--HHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecc--cc-hHhhhcc
Q 044823 284 VYVCLGSICNLTSSQLI--ELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGW--AP-QVMILSH 358 (497)
Q Consensus 284 v~vs~GS~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~--~p-q~~lL~~ 358 (497)
+|||.||....=...+. ++.+-.+.-..++|..+|...- .| -++..+.+| .+ -+.+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kp--------vagl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KP--------VAGLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cc--------ccccEEEeechHHHHHHHhhc
Confidence 78999998431122222 2333333445688999987542 22 122344443 44 3567777
Q ss_pred CCccccccccCchhHHHHHHhCCcEeccCCcc--------cchhhHHHHHHHHcceeEecc
Q 044823 359 PAVGGFLTHCGWNSSLEGISAGVQMLTWPLFT--------DQFCNEKLIVEVLRIGVSVGV 411 (497)
Q Consensus 359 ~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~~~~e~~G~G~~l~~ 411 (497)
+++ +|+|+|.||++.++..++|.+++|--. .|-..|..++ +.+.=+....
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~sp 123 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSP 123 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcC
Confidence 777 999999999999999999999999643 3677888887 7777666653
No 115
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.014 Score=56.49 Aligned_cols=213 Identities=14% Similarity=0.044 Sum_probs=106.3
Q ss_pred CCceEEeC-cCcCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHh-----CCC
Q 044823 238 QGKVWCIG-PVSLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEA-----SKK 311 (497)
Q Consensus 238 ~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~-----~~~ 311 (497)
+-+..||| |+....+-.. ....+.+-+....+++++.+--||-..--...+..+.++.+. .+.
T Consensus 155 g~~~~yVGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~ 223 (381)
T COG0763 155 GLPCTYVGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDL 223 (381)
T ss_pred CCCeEEeCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 34489999 8765432111 133344444333445689999998765222222233333332 356
Q ss_pred CeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeeccc-ch--HhhhccCCccccccccCchhHHHHHHhCCcEeccCC
Q 044823 312 PFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWA-PQ--VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~-pq--~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 388 (497)
+|+.-+....... +-..+ .+.......-++ ++ ..++..+++ .+.-+| .-++|+..+|+|||+.=-
T Consensus 224 ~~vlp~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk 291 (381)
T COG0763 224 KFVLPLVNAKYRR------IIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYK 291 (381)
T ss_pred eEEEecCcHHHHH------HHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEe
Confidence 7777664432110 11111 111110111122 22 235666776 666665 346799999999997532
Q ss_pred cc-cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhC
Q 044823 389 FT-DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEG 467 (497)
Q Consensus 389 ~~-DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~ 467 (497)
.. =-...|++.. +....--.+.--....-|+- ....++++.|.+++.+++.|++..+.+.+..+.|...++ ++
T Consensus 292 ~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEl-iq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~ 365 (381)
T COG0763 292 VKPITYFIAKRLV-KLPYVSLPNILAGREIVPEL-IQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----ED 365 (381)
T ss_pred ccHHHHHHHHHhc-cCCcccchHHhcCCccchHH-HhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CC
Confidence 11 1122444443 22221111000000000000 002589999999999999988666677777777777655 34
Q ss_pred CChHHHHHHHHH
Q 044823 468 GSSYNNIKFFHP 479 (497)
Q Consensus 468 g~~~~~~~~~~~ 479 (497)
++++.+++.+++
T Consensus 366 ~~~e~aA~~vl~ 377 (381)
T COG0763 366 PASEIAAQAVLE 377 (381)
T ss_pred cHHHHHHHHHHH
Confidence 455555555444
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.026 Score=54.76 Aligned_cols=322 Identities=16% Similarity=0.152 Sum_probs=168.1
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCC-CeEEEEeCCcch--hhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHG-ATATIVTTPVNA--ARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGC 82 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 82 (497)
+++||+ +.+++.=.+.=+-+|.+++.+.+ .+..++.+.... +......+.. ++.. | +..
T Consensus 2 ~~~Kv~-~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~-----~i~~-----p-------dy~ 63 (383)
T COG0381 2 KMLKVL-TIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELF-----GIRK-----P-------DYD 63 (383)
T ss_pred CceEEE-EEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHh-----CCCC-----C-------Ccc
Confidence 345554 45788889999999999999997 777777665433 3222222211 2221 1 110
Q ss_pred CCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEE--ECCCC-cchHHHHHHcCCCeEEEechhHHHHHHHHHh
Q 044823 83 ENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCII--SDMCI-PWTVDTAAKFNVPRIIFHGFSCFCLLCLDIL 159 (497)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI--~D~~~-~~a~~~A~~lgIP~i~~~~~~~~~~~~~~~~ 159 (497)
-... .+. + .+...+......+.+++.+ .+||+|+ .|..+ .++..+|-.++||..-+--+-
T Consensus 64 L~i~-~~~-~---tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl---------- 126 (383)
T COG0381 64 LNIM-KPG-Q---TLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL---------- 126 (383)
T ss_pred hhcc-ccC-C---CHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc----------
Confidence 0000 000 1 1223334456677888888 8999887 45554 466889999999988642110
Q ss_pred hhhcccCCCCCCCccccCCCCCCCcccccccCCCCCCCchHHHHHHHHHHhcccccEEEecchhhhhHHHHHH-HHhhcC
Q 044823 160 RVSKVHENVSSDSEYFKVPGFPHHIEFTKVQLPISPPTDELKEFNEKILAADKKTYGVIINTFEELESASVKE-YKNAKQ 238 (497)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~-~~~~~~ 238 (497)
.+. ..+ +|.-+ -++.... -+...+.++-. +-.+ .+...+
T Consensus 127 ---------Rt~--~~~---~PEE~-------------------NR~l~~~--~S~~hfapte~-----ar~nLl~EG~~ 166 (383)
T COG0381 127 ---------RTG--DLY---FPEEI-------------------NRRLTSH--LSDLHFAPTEI-----ARKNLLREGVP 166 (383)
T ss_pred ---------ccC--CCC---CcHHH-------------------HHHHHHH--hhhhhcCChHH-----HHHHHHHcCCC
Confidence 000 000 22210 0000000 01111222211 0011 122233
Q ss_pred -CceEEeCcCcCCCccchhhhhcCCCCCCChhhhhhh-hccCCCCeEEEEeeCCcccCCHhhHHHHHHHHH----hC-CC
Q 044823 239 -GKVWCIGPVSLCNKESLDKVERGNKAAIDIPECLTW-LDSQQPSSVVYVCLGSICNLTSSQLIELGLGLE----AS-KK 311 (497)
Q Consensus 239 -~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~----~~-~~ 311 (497)
.+++.+|-...+--.... .. ...+...... +... .+..+++|+=-..+.. +.+..+.+++. .. +.
T Consensus 167 ~~~IfvtGnt~iDal~~~~-----~~-~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~ 238 (383)
T COG0381 167 EKRIFVTGNTVIDALLNTR-----DR-VLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDV 238 (383)
T ss_pred ccceEEeCChHHHHHHHHH-----hh-hccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCc
Confidence 357777844333110000 00 0011222221 2222 2348888864444443 44555555554 33 33
Q ss_pred CeEEEEeCCCchhhhhhhhchhhHH-HHhc-CCCeeee---cccchHhhhccCCccccccccCchhHHHHHHhCCcEecc
Q 044823 312 PFIWVSRVGNKLEELEKWLVEENFE-ERIK-GRGLLIR---GWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 386 (497)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~lp~~~~-~~~~-~~nv~v~---~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 386 (497)
.+|...-... ... .+. ..++ .+|+.+. +|.+...++.++-+ ++|-.| |-.-||-..|+|.+++
T Consensus 239 ~viyp~H~~~---~v~------e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~l 306 (383)
T COG0381 239 IVIYPVHPRP---RVR------ELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVL 306 (383)
T ss_pred eEEEeCCCCh---hhh------HHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEee
Confidence 4444433221 111 111 2233 3356654 46677889999987 999987 5667999999999999
Q ss_pred CCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCC
Q 044823 387 PLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 387 P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
=...++|. .+ ..|.-+.++ .+.+.|.+++.++++++
T Consensus 307 R~~TERPE---~v--~agt~~lvg----------------~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 307 RDTTERPE---GV--EAGTNILVG----------------TDEENILDAATELLEDE 342 (383)
T ss_pred ccCCCCcc---ce--ecCceEEeC----------------ccHHHHHHHHHHHhhCh
Confidence 99999995 22 344444443 56799999999999987
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.24 E-value=0.013 Score=58.60 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=59.7
Q ss_pred CCCeeeecccchH---hhhccCCccccccc----cCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccc
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLTH----CGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVE 412 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~ItH----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~ 412 (497)
..++.+.+++|+. .+++.+++ +|.- .|+ .++.||+++|+|+|+.... .+...+ +.-..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeCC
Confidence 4678888999864 46888888 6642 444 4778999999999997653 344555 355567654322
Q ss_pred cccccccccccccccCHHHHHHHHHHHhcCC
Q 044823 413 VPMKFGEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
.+.+++.++|.++++|+
T Consensus 329 --------------~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 329 --------------MTSDSIISDINRTLADP 345 (380)
T ss_pred --------------CCHHHHHHHHHHHHcCH
Confidence 47899999999999987
No 118
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.22 E-value=0.033 Score=50.56 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=35.6
Q ss_pred CCCeeeecccch----HhhhccCCccccccccC----chhHHHHHHhCCcEeccCCccc
Q 044823 341 GRGLLIRGWAPQ----VMILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFTD 391 (497)
Q Consensus 341 ~~nv~v~~~~pq----~~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~l~~P~~~D 391 (497)
.+|+.+.+++++ ..++..+++ +|+-.. -+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 568888888632 224444777 776665 5899999999999999887553
No 119
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.16 E-value=0.00093 Score=55.94 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=51.3
Q ss_pred CCCeeeecccch-HhhhccCCccccccc--cCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLTH--CGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMK 416 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~ItH--gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~ 416 (497)
.+|+.+.+|+++ ..+++.+++.+..+. -|. +++.|++++|+|+|+.+. . ..... +..+.|..+ .+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~----~-~~~~~-~~~~~~~~~-~~---- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN----G-AEGIV-EEDGCGVLV-AN---- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH----H-CHCHS----SEEEE--TT----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc----c-hhhhe-eecCCeEEE-CC----
Confidence 459999999975 558889999666542 233 799999999999999766 1 22344 357777777 33
Q ss_pred cccccccccccCHHHHHHHHHHHhcC
Q 044823 417 FGEEEKIGVLVKKEDVETAINILMDD 442 (497)
Q Consensus 417 ~~~~~~~~~~~~~~~l~~ai~~vl~~ 442 (497)
+++++.++|.++++|
T Consensus 121 -----------~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 -----------DPEELAEAIERLLND 135 (135)
T ss_dssp ------------HHHHHHHHHHHHH-
T ss_pred -----------CHHHHHHHHHHHhcC
Confidence 899999999999865
No 120
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.13 E-value=0.34 Score=48.33 Aligned_cols=79 Identities=18% Similarity=0.067 Sum_probs=53.1
Q ss_pred CCCeeeecccchHh---hhccCCccccc------cccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEec
Q 044823 341 GRGLLIRGWAPQVM---ILSHPAVGGFL------THCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVG 410 (497)
Q Consensus 341 ~~nv~v~~~~pq~~---lL~~~~~~~~I------tHgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~ 410 (497)
.+||.+.+++|+.+ .++++++.++- +.++. +-+.|++++|+|+|..++ .... +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 57999999998644 67788884332 23333 358999999999998753 2233 2333 33332
Q ss_pred cccccccccccccccccCHHHHHHHHHHHhcCC
Q 044823 411 VEVPMKFGEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
. -+.+++.++|.+++.++
T Consensus 324 ~---------------~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---------------DDPEEFVAAIEKALLED 341 (373)
T ss_pred C---------------CCHHHHHHHHHHHHhcC
Confidence 2 27899999999977543
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.95 E-value=0.26 Score=52.07 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=52.4
Q ss_pred CeeeecccchH-hhhccCCcccccc---ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccccc
Q 044823 343 GLLIRGWAPQV-MILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKF 417 (497)
Q Consensus 343 nv~v~~~~pq~-~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~ 417 (497)
++.+.++.++. .+++.+++ ||. +=|+ .+++||+++|+|+|+.-..+... + ..-+-|. + ..
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~g~nGl-l-~~----- 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RSFPNCL-T-YK----- 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-eecCCeE-e-cC-----
Confidence 46666777765 48888888 765 3344 58899999999999987755321 2 1222222 2 12
Q ss_pred ccccccccccCHHHHHHHHHHHhcCC
Q 044823 418 GEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 418 ~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
+.+++.++|.++|+|+
T Consensus 667 ----------D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 ----------TSEDFVAKVKEALANE 682 (794)
T ss_pred ----------CHHHHHHHHHHHHhCc
Confidence 6889999999999876
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.68 E-value=0.24 Score=48.24 Aligned_cols=135 Identities=9% Similarity=-0.033 Sum_probs=76.0
Q ss_pred CeEEEEeeCC-ccc--CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeec--ccch-Hh
Q 044823 281 SSVVYVCLGS-ICN--LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRG--WAPQ-VM 354 (497)
Q Consensus 281 ~~vv~vs~GS-~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~--~~pq-~~ 354 (497)
++.|.+..|+ ... .+.+.+.++++.+.+.+.++++..+.+.... .-+.+.+... +..+.+ -++| .+
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~------~~~~i~~~~~--~~~l~g~~sL~el~a 250 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQ------RAERIAEALP--GAVVLPKMSLAEVAA 250 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHH------HHHHHHhhCC--CCeecCCCCHHHHHH
Confidence 3455555554 332 5678889999998776788776655432211 1112222211 222223 3445 56
Q ss_pred hhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHH
Q 044823 355 ILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVET 434 (497)
Q Consensus 355 lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (497)
+++++++ +|+.= -|.++=|...|+|.|++ ++ +.+..+.. =+|-...+-....+ ..++++++.+
T Consensus 251 li~~a~l--~I~~D-Sgp~HlAaa~g~P~i~l--fg--~t~p~~~~-P~~~~~~~~~~~~~---------~~I~~~~V~~ 313 (319)
T TIGR02193 251 LLAGADA--VVGVD-TGLTHLAAALDKPTVTL--YG--ATDPGRTG-GYGKPNVALLGESG---------ANPTPDEVLA 313 (319)
T ss_pred HHHcCCE--EEeCC-ChHHHHHHHcCCCEEEE--EC--CCCHhhcc-cCCCCceEEccCcc---------CCCCHHHHHH
Confidence 8989998 88874 47788888999999976 22 11222221 11211111001101 2799999999
Q ss_pred HHHHHh
Q 044823 435 AINILM 440 (497)
Q Consensus 435 ai~~vl 440 (497)
++.++|
T Consensus 314 ai~~~~ 319 (319)
T TIGR02193 314 ALEELL 319 (319)
T ss_pred HHHhhC
Confidence 998875
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.68 E-value=0.72 Score=47.80 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=48.5
Q ss_pred CCCeeeecccch-HhhhccCCcccccc---ccCc-hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccc
Q 044823 341 GRGLLIRGWAPQ-VMILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVE 412 (497)
Q Consensus 341 ~~nv~v~~~~pq-~~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~ 412 (497)
.++|.+.+|..+ ..+|+.+++ ||. +-|+ +++.||+++|+|+|+... ..+...+ +.-.-|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 478999998765 457888888 875 3554 589999999999997654 3456666 366778887654
No 124
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.051 Score=55.06 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=79.4
Q ss_pred CCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHH--HhcCCCeeeecccchHhh-
Q 044823 279 QPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEE--RIKGRGLLIRGWAPQVMI- 355 (497)
Q Consensus 279 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~--~~~~~nv~v~~~~pq~~l- 355 (497)
+++-+||+||+-.....++.+..=.+-|+..+..++|..+++.+..--+. + ..+.+ .++...+++.+-.|...-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~--l-~~la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINAR--L-RDLAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHH--H-HHHHHHcCCChhheeecCCCCCHHHH
Confidence 34569999999999999999998888899999999999988654331111 2 12222 235677888887775443
Q ss_pred --hccCCccccc---cccCchhHHHHHHhCCcEeccCCcccch
Q 044823 356 --LSHPAVGGFL---THCGWNSSLEGISAGVQMLTWPLFTDQF 393 (497)
Q Consensus 356 --L~~~~~~~~I---tHgG~gs~~eal~~GvP~l~~P~~~DQ~ 393 (497)
+..+++ |. --||+.|..|+|..|||+|..+ ++|+
T Consensus 504 a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 504 ARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred Hhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 334444 54 4799999999999999999876 6775
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.45 E-value=0.031 Score=46.84 Aligned_cols=101 Identities=13% Similarity=0.219 Sum_probs=65.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCC
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDML 88 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (497)
||++++.-...| ...+++.|.++||+|++++.......... ..++.++.++.+ . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~---------~--k--- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP---------R--K--- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC---------C--C---
Confidence 477777766666 56889999999999999998644322221 237888876421 0 0
Q ss_pred CchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCc---chHHHHHHcC-CCeEEE
Q 044823 89 PSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIP---WTVDTAAKFN-VPRIIF 145 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---~a~~~A~~lg-IP~i~~ 145 (497)
.....+ . .. .+..+++. .+||+|.+..... .+..++...| +|.+..
T Consensus 56 ---~~~~~~----~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 56 ---SPLNYI----K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred ---ccHHHH----H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 001111 1 12 67888888 8999998777543 2445667888 888864
No 126
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.38 E-value=0.018 Score=56.47 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=69.8
Q ss_pred CCCeeeecccchHhh---hccCCccccccc-------cCc------hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHc
Q 044823 341 GRGLLIRGWAPQVMI---LSHPAVGGFLTH-------CGW------NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLR 404 (497)
Q Consensus 341 ~~nv~v~~~~pq~~l---L~~~~~~~~ItH-------gG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G 404 (497)
.+|+.+.+|+|+.++ |+. +.+++... +.+ +-+.+.+++|+|+|+. ++...+..+ ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 568999999998765 333 33222221 111 1267789999999985 456778888 6999
Q ss_pred ceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 044823 405 IGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAK 461 (497)
Q Consensus 405 ~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~ 461 (497)
+|+.++ +.+++.+++.++. .++.+.|++|++++++.++
T Consensus 280 ~G~~v~-----------------~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 280 LGFVVD-----------------SLEELPEIIDNIT--EEEYQEMVENVKKISKLLR 317 (333)
T ss_pred ceEEeC-----------------CHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh
Confidence 999985 3357888888753 4667889999999999977
No 127
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.32 E-value=0.043 Score=55.88 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=82.4
Q ss_pred CeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHH-HhcCCCeeeecccchH-----h
Q 044823 281 SSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEE-RIKGRGLLIRGWAPQV-----M 354 (497)
Q Consensus 281 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~v~~~~pq~-----~ 354 (497)
.-+||++|--.-..+++.++.-++-|++.+..++|.+..+..-+ .. +-..... .+.++.|++.+-+.-. -
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--~r--f~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--QR--FRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--HH--HHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 44899999888889999999999999999999999998864321 11 1001111 1246777776665532 2
Q ss_pred hhccCCccccccccCchhHHHHHHhCCcEeccCCcccc-hhhHHHHHHHHcceeEe
Q 044823 355 ILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQ-FCNEKLIVEVLRIGVSV 409 (497)
Q Consensus 355 lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ-~~na~~~~e~~G~G~~l 409 (497)
.|+.-.+.-+.+. |..|.++.|+.|||||.+|.-.-- ..-+..+. ..|+|-.+
T Consensus 834 ~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~-~~Gl~hli 887 (966)
T KOG4626|consen 834 QLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLT-ALGLGHLI 887 (966)
T ss_pred hhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHH-HcccHHHH
Confidence 3433334445554 688999999999999999975432 33334553 77888744
No 128
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.01 E-value=0.0079 Score=46.83 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=47.1
Q ss_pred ChhhhhhhhccCCCCeEEEEeeCCcccC---C--HhhHHHHHHHHHhCCCCeEEEEeCCCc
Q 044823 267 DIPECLTWLDSQQPSSVVYVCLGSICNL---T--SSQLIELGLGLEASKKPFIWVSRVGNK 322 (497)
Q Consensus 267 ~~~~~~~~l~~~~~~~vv~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~ 322 (497)
.+..+..|+...+.++.|+||+||.... . ...+..++++++..+..+|.++.....
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 3567778999988899999999998873 2 257889999999999999999987644
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.45 E-value=2.4 Score=40.11 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=69.9
Q ss_pred CCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHH
Q 044823 16 LAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAY 95 (497)
Q Consensus 16 p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (497)
.-.-|+.-+..|-+.|.++||+|.+.+-... .+.+.+.. .++.+.++.- .+.. .+..
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~-----ygf~~~~Igk--------~g~~--------tl~~ 64 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL-----YGFPYKSIGK--------HGGV--------TLKE 64 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH-----hCCCeEeecc--------cCCc--------cHHH
Confidence 3456889999999999999999988775422 22333322 3777777641 1100 1111
Q ss_pred HHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEech
Q 044823 96 NFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~ 148 (497)
.+... ....-.+.+++++ .+||+.+. -.+..+.-+|-.+|+|+|.+.-.
T Consensus 65 Kl~~~-~eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 65 KLLES-AERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHH-HHHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 22222 2223456677777 89999998 56778889999999999997443
No 130
>PRK14098 glycogen synthase; Provisional
Probab=95.28 E-value=0.38 Score=49.83 Aligned_cols=80 Identities=8% Similarity=-0.007 Sum_probs=53.4
Q ss_pred CCCeeeecccchH---hhhccCCcccccccc---Cc-hhHHHHHHhCCcEeccCCcc--cchhhHHHHHHHHcceeEecc
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLTHC---GW-NSSLEGISAGVQMLTWPLFT--DQFCNEKLIVEVLRIGVSVGV 411 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~ItHg---G~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~G~~l~~ 411 (497)
++++.+.++++.. .+++.+++ |+.-. |+ .+.+||+++|+|.|+....+ |.-. ... +.-+-|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~-~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVS-EDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCC-CCCCceeEeCC
Confidence 5678888888764 57888888 66432 33 37789999999888876533 2211 111 12456776654
Q ss_pred ccccccccccccccccCHHHHHHHHHHHh
Q 044823 412 EVPMKFGEEEKIGVLVKKEDVETAINILM 440 (497)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 440 (497)
. +++++.++|.+++
T Consensus 436 ~---------------d~~~la~ai~~~l 449 (489)
T PRK14098 436 Y---------------TPEALVAKLGEAL 449 (489)
T ss_pred C---------------CHHHHHHHHHHHH
Confidence 3 7899999999876
No 131
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.15 E-value=0.89 Score=46.02 Aligned_cols=165 Identities=9% Similarity=0.084 Sum_probs=92.2
Q ss_pred hhhhccCCCCeEEEEeeCCcccC------C----HhhHHHHHHHHHhCCCCeEEEEeCCC----chhhhhhhhchhhHHH
Q 044823 272 LTWLDSQQPSSVVYVCLGSICNL------T----SSQLIELGLGLEASKKPFIWVSRVGN----KLEELEKWLVEENFEE 337 (497)
Q Consensus 272 ~~~l~~~~~~~vv~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~----~~~~~~~~~lp~~~~~ 337 (497)
..|+...+.+++|-||.-..... . .+.+.++++.+.+.++++++..-... ..++. . .-..+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~-~--~~~~l~~ 301 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDR-M--VALNLRQ 301 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchH-H--HHHHHHH
Confidence 34554333345788876543311 1 12334455656566888876643211 00010 0 1123333
Q ss_pred Hhc-CCCeee-e-cccch--HhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeE-ecc
Q 044823 338 RIK-GRGLLI-R-GWAPQ--VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVS-VGV 411 (497)
Q Consensus 338 ~~~-~~nv~v-~-~~~pq--~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~-l~~ 411 (497)
.+. +.++.+ . .+-+. ..+++++++ +|..==+ +..-|+..|||.+.++. | +....-+ +.+|..-. .+.
T Consensus 302 ~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~ 374 (426)
T PRK10017 302 HVSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDI 374 (426)
T ss_pred hcccccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEech
Confidence 332 222222 2 23333 367888887 7754323 45668889999999998 4 3444556 58888866 455
Q ss_pred ccccccccccccccccCHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHH
Q 044823 412 EVPMKFGEEEKIGVLVKKEDVETAINILMDDGEE-RDGRRRRAKEFGEL 459 (497)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~~a~~~~~~ 459 (497)
+ .++.++|.+.+.++++|.++ .+.++++..++++.
T Consensus 375 ~-------------~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~~ 410 (426)
T PRK10017 375 R-------------HLLDGSLQAMVADTLGQLPALNARLAEAVSRERQT 410 (426)
T ss_pred h-------------hCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 5 68999999999999987542 33444444444443
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.08 E-value=2.4 Score=41.66 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=61.3
Q ss_pred CeEEEEeeCCccc---CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCee-eec--ccch-H
Q 044823 281 SSVVYVCLGSICN---LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLL-IRG--WAPQ-V 353 (497)
Q Consensus 281 ~~vv~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~-v~~--~~pq-~ 353 (497)
++.|.+..|+... .+.+.+.++++.|...+.++++..+....+.. +-+.+.......+++ ..+ -+.+ .
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~-----~~~~i~~~~~~~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELA-----MVNEIAQGCQTPRVTSLAGKLTLPQLA 255 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHH-----HHHHHHhhCCCCcccccCCCCCHHHHH
Confidence 3467777776543 56788889998888778887766433211110 111222211122222 233 2444 5
Q ss_pred hhhccCCccccccccCchhHHHHHHhCCcEecc
Q 044823 354 MILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 386 (497)
Q Consensus 354 ~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 386 (497)
++++++++ ||+. --|.++=|.+.|+|.|.+
T Consensus 256 ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 256 ALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 68999998 9998 568899999999999986
No 133
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.88 E-value=1.9 Score=42.60 Aligned_cols=98 Identities=8% Similarity=0.038 Sum_probs=60.8
Q ss_pred CeEEEEeeCCccc---CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCC-eeeecc--cch-H
Q 044823 281 SSVVYVCLGSICN---LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRG-LLIRGW--APQ-V 353 (497)
Q Consensus 281 ~~vv~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~n-v~v~~~--~pq-~ 353 (497)
++.|.+..|+... .+.+.+.++++.|...+.++++..+....+.. .-..+.+.....+ +-..+- +.+ .
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~-----~~~~i~~~~~~~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLA-----CVNEIAQGCQTPPVTALAGKTTFPELG 257 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHH-----HHHHHHHhcCCCccccccCCCCHHHHH
Confidence 3577778787543 56888999999998778887766443321110 1111222111122 223332 444 5
Q ss_pred hhhccCCccccccccCchhHHHHHHhCCcEecc
Q 044823 354 MILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 386 (497)
Q Consensus 354 ~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 386 (497)
++++++++ ||+.= -|-++=|.+.|+|+|++
T Consensus 258 ali~~a~l--~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 258 ALIDHAQL--FIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHhCCE--EEecC-CHHHHHHHHcCCCEEEE
Confidence 68989998 99874 47788888999999876
No 134
>PHA01633 putative glycosyl transferase group 1
Probab=94.54 E-value=1.1 Score=43.71 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCCeeee---cccch---HhhhccCCccccccc---cCc-hhHHHHHHhCCcEeccCC------cccc------hhhHHH
Q 044823 341 GRGLLIR---GWAPQ---VMILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPL------FTDQ------FCNEKL 398 (497)
Q Consensus 341 ~~nv~v~---~~~pq---~~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~------~~DQ------~~na~~ 398 (497)
.+++.+. +++++ ..+++.+++ ||.- =|+ .+++||+++|+|+|+--. .+|+ .++..-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 5678877 45554 357788888 7753 354 478899999999998633 2332 223332
Q ss_pred HHH-HHcceeEeccccccccccccccccccCHHHHHHHHHHHhcC
Q 044823 399 IVE-VLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDD 442 (497)
Q Consensus 399 ~~e-~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 442 (497)
.++ ..|.|...+ ..+++++.++|.+++..
T Consensus 278 ~~~~~~g~g~~~~---------------~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIH---------------KFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeec---------------CCCHHHHHHHHHHHHhc
Confidence 211 234444443 36999999999998543
No 135
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.37 E-value=5.7 Score=39.10 Aligned_cols=104 Identities=9% Similarity=-0.027 Sum_probs=66.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQH--GATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
|||+++-..+.|++.=.+.+.+.|+++ +.+|++++.+.+.+.++.. +.++-+-. + +.. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~-~-------~~~-~~- 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIP-M-------PLG-HG- 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEe-c-------ccc-cc-
Confidence 579999999999999999999999997 9999999988544433222 33433221 0 010 00
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEE
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRII 144 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~ 144 (497)
. ..+.. ...+...++. .++|++|.=....-...++...|+|.-.
T Consensus 63 --~---~~~~~--------~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 --A---LEIGE--------RRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --h---hhhHH--------HHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 00100 1123344555 6999998655555566677777887654
No 136
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.23 E-value=0.42 Score=36.72 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=51.2
Q ss_pred ccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhh
Q 044823 367 HCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEER 446 (497)
Q Consensus 367 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~ 446 (497)
+|-..-+.|++++|+|+|.-.. +..... ..-|...-.- . +.+++.++|..+++|++..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~----~~~~~~~~~~-------------~-~~~el~~~i~~ll~~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREI----FEDGEHIITY-------------N-DPEELAEKIEYLLENPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHH----cCCCCeEEEE-------------C-CHHHHHHHHHHHHCCHHHH
Confidence 4445689999999999998765 222222 2222222112 2 7899999999999998655
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 044823 447 DGRRRRAKEFGELAKRALEEGGSSYNNIKFFH 478 (497)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 478 (497)
+.+++++++.-. +.-+....++.|+
T Consensus 67 ~~ia~~a~~~v~-------~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RRIAKNARERVL-------KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHHH-------HhCCHHHHHHHHH
Confidence 555555544433 2445555555544
No 137
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.19 E-value=0.77 Score=39.89 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=55.7
Q ss_pred hCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHHHHHHHhchHHHHHHH
Q 044823 33 QHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFLTSLQKLQLPFENLF 112 (497)
Q Consensus 33 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 112 (497)
++||+|++++...... . . .+++.+.+..+ ... .....+....++.-...-......+.++.
T Consensus 1 q~gh~v~fl~~~~~~~-~---------~-~GV~~~~y~~~-------~~~-~~~~~~~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPP-I---------P-PGVRVVRYRPP-------RGP-TPGTHPYVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCC-C---------C-CCcEEEEeCCC-------CCC-CCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 4799999999653322 1 1 26777766421 111 01111111223332233334555556665
Q ss_pred hhcCCCCeEEEECCCCcchHHHHHHc-CCCeEEE
Q 044823 113 REQTPQPCCIISDMCIPWTVDTAAKF-NVPRIIF 145 (497)
Q Consensus 113 ~~~~~~~D~vI~D~~~~~a~~~A~~l-gIP~i~~ 145 (497)
+. +..||+||+.+..-.++-+-+.+ ++|.+.+
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGY 94 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEE
Confidence 55 78999999998877788889999 7999986
No 138
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.18 E-value=0.083 Score=44.94 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHHHHHHH
Q 044823 23 PMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFLTSLQ 102 (497)
Q Consensus 23 P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (497)
-+..|+++|.++||+|+++++........ ....++.+..++.+... ... ....
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~------~~~~------- 58 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-------EEEDGVRVHRLPLPRRP-------WPL------RLLR------- 58 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-------EEETTEEEEEE--S-SS-------SGG------GHCC-------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-------cccCCceEEeccCCccc-------hhh------hhHH-------
Confidence 36789999999999999998764333111 12236788777643111 000 0000
Q ss_pred hchHHHHHHH--hhcCCCCeEEEECCCC-cchHHHHH-HcCCCeEEE
Q 044823 103 KLQLPFENLF--REQTPQPCCIISDMCI-PWTVDTAA-KFNVPRIIF 145 (497)
Q Consensus 103 ~~~~~l~~~l--~~~~~~~D~vI~D~~~-~~a~~~A~-~lgIP~i~~ 145 (497)
....+.+++ +. .+||+|.+.... .....++. ..++|++..
T Consensus 59 -~~~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 59 -FLRRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp -HHHHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred -HHHHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 112334444 44 799999877643 23333444 789999884
No 139
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.37 E-value=7.1 Score=37.00 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=36.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhh
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQH--GATATIVTTPVNAARF 50 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~ 50 (497)
||+++-..+.|++.=+.++.++|+++ +-+|++++.+.+.+.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~ 44 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL 44 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH
Confidence 58999999999999999999999998 4899999998554433
No 140
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.04 E-value=8.7 Score=37.31 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=36.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQH--GATATIVTTPVN 46 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~ 46 (497)
|||+++-....|++.=..++.+.|+++ +.+|++++.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~ 41 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGF 41 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHH
Confidence 589999999999999999999999998 999999998843
No 141
>PHA01630 putative group 1 glycosyl transferase
Probab=91.99 E-value=1.3 Score=43.23 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=27.9
Q ss_pred ccchH---hhhccCCcccccc---ccC-chhHHHHHHhCCcEeccCCc
Q 044823 349 WAPQV---MILSHPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLF 389 (497)
Q Consensus 349 ~~pq~---~lL~~~~~~~~It---HgG-~gs~~eal~~GvP~l~~P~~ 389 (497)
++|+. .+++.+++ ||. ..| -.++.||+++|+|+|+.-..
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 36643 36888888 652 344 35889999999999997653
No 142
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.92 E-value=2 Score=44.76 Aligned_cols=93 Identities=11% Similarity=0.171 Sum_probs=65.5
Q ss_pred CCeeeecccc--h-HhhhccCCcccccccc---CchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 342 RGLLIRGWAP--Q-VMILSHPAVGGFLTHC---GWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 342 ~nv~v~~~~p--q-~~lL~~~~~~~~ItHg---G~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
..|.+.++.. + ..++.++++ +|.=+ |.++.+||+.+|+|+| .......+ +...=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 5677888877 4 447777777 88766 7789999999999999 22233344 244445555 3
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAK 461 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~ 461 (497)
+..+|.+++..+|.+++.-..+...|-+.++...
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 6788999999999987655566666666655544
No 143
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.71 E-value=0.8 Score=38.32 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=48.2
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEe
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEI 69 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i 69 (497)
|++++|++.+.++.+|-.-..-++..|.++|++|+++....-.+.+.+.+... +.+++.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~-----~~d~V~l 60 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET-----DADAILV 60 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----CCCEEEE
Confidence 46889999999999999999999999999999999998876555665554332 4455554
No 144
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.66 E-value=2 Score=37.46 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=63.1
Q ss_pred ecCCCcCCHHHHHHHHHHH-HhC-CCeEEEEeCCcchhh--hHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCC
Q 044823 13 LPFLAQGHLIPMFDIARLL-AQH-GATATIVTTPVNAAR--FKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDML 88 (497)
Q Consensus 13 ~~~p~~GHv~P~l~LA~~L-~~r-Gh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (497)
+..++-||+.=|+.|.+.+ .++ .++..+++..+..+. +.+ .+.. ......+..++ ...+ ..
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~-~~~~--~~~~~~~~~~~---------r~r~-v~-- 67 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQ-LEKS--SSKRHKILEIP---------RARE-VG-- 67 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHH-HHHh--ccccceeeccc---------eEEE-ec--
Confidence 3455669999999999999 333 555555655443332 221 1211 11111233322 1100 00
Q ss_pred CchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCC--cchHHHHHHc------CCCeEEE
Q 044823 89 PSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCI--PWTVDTAAKF------NVPRIIF 145 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~l------gIP~i~~ 145 (497)
.......+.....+...+.-+.+. +||+||+..-. .....+|..+ |.+.|.+
T Consensus 68 --q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 68 --QSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred --hhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 022233344444455566666665 89999988733 4667788999 9999886
No 145
>PLN02939 transferase, transferring glycosyl groups
Probab=90.53 E-value=6.1 Score=43.74 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=53.7
Q ss_pred CCCeeeecccchH---hhhccCCccccccc---cCc-hhHHHHHHhCCcEeccCCcc--cchhh--HHHHHHHHcceeEe
Q 044823 341 GRGLLIRGWAPQV---MILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFT--DQFCN--EKLIVEVLRIGVSV 409 (497)
Q Consensus 341 ~~nv~v~~~~pq~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~n--a~~~~e~~G~G~~l 409 (497)
.++|.+..+.+.. .+++.+++ ||.- =|+ .+.+||+++|+|.|+....+ |.-.+ ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4578888888764 47888888 7752 233 48899999999998876543 22111 11110123456665
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHhc
Q 044823 410 GVEVPMKFGEEEKIGVLVKKEDVETAINILMD 441 (497)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 441 (497)
+. .+++++..+|.++++
T Consensus 914 ~~---------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT---------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC---------------CCHHHHHHHHHHHHH
Confidence 43 378888888888764
No 146
>PRK14099 glycogen synthase; Provisional
Probab=89.27 E-value=8.3 Score=39.97 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=30.1
Q ss_pred CCCcEEEEecC--------CCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 5 TSNFHFILLPF--------LAQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 5 ~~~~~vl~~~~--------p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
|++|||++++. ++.|++ .-.|.++|+++||+|.++.|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCCC
Confidence 36789999875 344554 4578899999999999998853
No 147
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=88.64 E-value=25 Score=34.26 Aligned_cols=95 Identities=11% Similarity=0.104 Sum_probs=59.2
Q ss_pred CeEEEEeeCCcc-c---CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCee-eec--ccch-
Q 044823 281 SSVVYVCLGSIC-N---LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLL-IRG--WAPQ- 352 (497)
Q Consensus 281 ~~vv~vs~GS~~-~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~-v~~--~~pq- 352 (497)
++.|.+.-|+.. . .+.+.+.++++.+...+.+++.. +.+...+ .-+.+.... +.+++ ..+ -+.+
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~-G~~~e~~------~~~~i~~~~-~~~~~~l~g~~sL~el 245 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF-GSAKDHP------AGNEIEALL-PGELRNLAGETSLDEA 245 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE-EChhhHH------HHHHHHHhC-CcccccCCCCCCHHHH
Confidence 457888877742 2 56788999999887767776655 4433221 111222211 22222 222 3344
Q ss_pred HhhhccCCccccccccCchhHHHHHHhCCcEecc
Q 044823 353 VMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 386 (497)
Q Consensus 353 ~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 386 (497)
..+++++++ ||+.= -|-++=|.+.|+|+|.+
T Consensus 246 ~ali~~a~l--~I~~D-SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 246 VDLIALAKA--VVTND-SGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHhCCE--EEeeC-CHHHHHHHHcCCCEEEE
Confidence 568889998 98874 46788889999999875
No 148
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.24 E-value=7.3 Score=36.32 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 4 ETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
+.++||||+..=-+. |---+..|+++|.+.| +|+++.|....+
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 356789998876553 2246788999999888 799998886554
No 149
>PRK10125 putative glycosyl transferase; Provisional
Probab=88.24 E-value=9.6 Score=38.47 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhCCCCe-EEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccc-h---HhhhccCCcccccccc---C
Q 044823 298 QLIELGLGLEASKKPF-IWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAP-Q---VMILSHPAVGGFLTHC---G 369 (497)
Q Consensus 298 ~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q---~~lL~~~~~~~~ItHg---G 369 (497)
.+..+++|+...+..+ ++..|..... . .+++...++.. + ..+++.+++ ||.-. |
T Consensus 257 g~~~li~A~~~l~~~~~L~ivG~g~~~-------~---------~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Eg 318 (405)
T PRK10125 257 TDQQLVREMMALGDKIELHTFGKFSPF-------T---------AGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDN 318 (405)
T ss_pred cHHHHHHHHHhCCCCeEEEEEcCCCcc-------c---------ccceEEecCcCCHHHHHHHHHhCCE--EEECCcccc
Confidence 3467888888765443 3444433210 1 23555555543 2 335666777 66532 2
Q ss_pred -chhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHH
Q 044823 370 -WNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAI 436 (497)
Q Consensus 370 -~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai 436 (497)
-.+++||+++|+|+|+....+ ....+ +. +-|..++.. +.++|++++
T Consensus 319 fp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~---------------d~~~La~~~ 365 (405)
T PRK10125 319 YPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE---------------EVLQLAQLS 365 (405)
T ss_pred CcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC---------------CHHHHHhcc
Confidence 358999999999999987764 23334 23 568888655 677777643
No 150
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=87.48 E-value=1.5 Score=35.61 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=38.7
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLA 55 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (497)
||++.+.++..|.....-++..|.++|++|.........+.+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~ 47 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK 47 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999999999999999988876544444544443
No 151
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=87.45 E-value=0.96 Score=38.94 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.3
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 17 AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 17 ~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.-|=-.-+..|+++|+++||+|+++++.
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4566677899999999999999999877
No 152
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=30 Score=33.52 Aligned_cols=127 Identities=16% Similarity=0.008 Sum_probs=79.7
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
.++.|++++..+-.||--.|--=|..|+..|.+|.++..-...+. .+.+ .+++|+++.++.++..++.|
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~l~-----~hprI~ih~m~~l~~~~~~p----- 78 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EELL-----NHPRIRIHGMPNLPFLQGGP----- 78 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HHHh-----cCCceEEEeCCCCcccCCCc-----
Confidence 467899999999999999999999999999999999977544321 1221 35689999986432221111
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECC-CCcchHHHHHH----cCCCeEEEechhHH
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDM-CIPWTVDTAAK----FNVPRIIFHGFSCF 151 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-~~~~a~~~A~~----lgIP~i~~~~~~~~ 151 (497)
..+........++...+-.+..- .++|.++.-. -+.....+|.. .|...++=+....+
T Consensus 79 -------~~~~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 79 -------RVLFLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred -------hhhhhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 12223334444455555555554 7889887544 44444444433 36777764443333
No 153
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=86.51 E-value=4 Score=41.84 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=65.0
Q ss_pred ecccchHh---hhccCCcccccc---ccCch-hHHHHHHhCCc----EeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 347 RGWAPQVM---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQ----MLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 347 ~~~~pq~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
...+++.+ ++..+++ |+. +=|+| ++.||+++|+| +|+--..+ .+..+ +-|+.++..
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP~--- 407 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNPY--- 407 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECCC---
Confidence 34555544 5777777 765 44765 77799999999 55444333 22223 246666544
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYH 482 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 482 (497)
+.++++++|.++|+++. +..+++.+++++... .-+...-+++|+.++.
T Consensus 408 ------------d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 ------------DIDGMADAIARALTMPL--EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred ------------CHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 88999999999998642 133344444444433 3466677778887663
No 154
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=85.52 E-value=3.1 Score=42.77 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=59.7
Q ss_pred eecccchHh---hhccCCcccccc---ccCch-hHHHHHHhCCc---EeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 346 IRGWAPQVM---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQ---MLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 346 v~~~~pq~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
+.+++++.+ ++..+++ ||. +-|+| ++.||+++|+| .|++--++.- + +...-|+.++..
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~---~----~~~~~g~lv~p~--- 412 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA---A----EELSGALLVNPY--- 412 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc---h----hhcCCCEEECCC---
Confidence 446677644 5778887 663 45665 67899999999 3333322211 1 112235555544
Q ss_pred ccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRY 481 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 481 (497)
+.+++.++|.++++++++ ..+++.++.++... .-+...-+..++.++
T Consensus 413 ------------d~~~la~ai~~~l~~~~~--e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 413 ------------DIDEVADAIHRALTMPLE--ERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ------------CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 789999999999987621 11222222222222 345556666666554
No 155
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.96 E-value=8.5 Score=35.59 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=62.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDM 87 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 87 (497)
||||+..=-+ =|---+..|+++|+ .+++|+++.|..+.+-.-..+. ....++...+. ........
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slT----l~~Plr~~~~~---------~~~~av~G 65 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLT----LHEPLRVRQVD---------NGAYAVNG 65 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccc----cccCceeeEec---------cceEEecC
Confidence 4555554433 24455678888888 9999999999865553322211 00112222211 11100111
Q ss_pred CCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECC-------------CCcchHHHHHHcCCCeEEEech
Q 044823 88 LPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDM-------------CIPWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-------------~~~~a~~~A~~lgIP~i~~~~~ 148 (497)
.+ .+-..-.+..++++ .+||+||+-. -+.+|+.=|..+|||.|.+|..
T Consensus 66 TP-----------aDCV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 TP-----------ADCVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred Ch-----------HHHHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 11 11223356667766 6799988742 2245667788899999998755
No 156
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=84.77 E-value=39 Score=32.64 Aligned_cols=122 Identities=16% Similarity=0.072 Sum_probs=67.9
Q ss_pred CeEEEEeeCCccc---CCHhhHHHH----HHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhc-CCCeeeec---c
Q 044823 281 SSVVYVCLGSICN---LTSSQLIEL----GLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIK-GRGLLIRG---W 349 (497)
Q Consensus 281 ~~vv~vs~GS~~~---~~~~~~~~~----~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~---~ 349 (497)
++.+-|-.|.-.. .+.+....+ .+.++..+.++..+++.....+ .-.-+.+..+ ...+.+-+ .
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~------~~~~L~~~~~~~~~~~~~~~~~~ 219 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPE------AEAALRELLKDNPGVYIWDGTGE 219 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHH------HHHHHHHhhcCCCceEEecCCCC
Confidence 3455555664333 455533333 3333345656666666554322 1112222221 23342222 2
Q ss_pred cchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchh----hHHHHHHHHcceeEecc
Q 044823 350 APQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFC----NEKLIVEVLRIGVSVGV 411 (497)
Q Consensus 350 ~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~----na~~~~e~~G~G~~l~~ 411 (497)
=|+...|+.++. ++||=--.+.+.||+..|+|+.++|.-. +.. ....+ ++.|+-...+.
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~~ 282 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFTG 282 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECCC
Confidence 256778888886 4666666799999999999999999876 321 23345 35666655543
No 157
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.00 E-value=45 Score=32.63 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=67.5
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQH--GATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
+|||+++-....|++.=.+.+-+.|+++ +.++++++.+...+-++.. +.|.-+-. .....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~----------~~~~~ 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVII----------IDKKK 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhcc----------ccccc
Confidence 4799999999999999999999999999 6999999988544433222 12222110 00000
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEE
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRII 144 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~ 144 (497)
. . ..+ .-...+...++. .++|+||.=...+-...++...++|.-.
T Consensus 63 ~------~--~~~-----~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 63 K------G--LGL-----KERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c------c--cch-----HHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 0 000 112244455565 6899999776666666777788888665
No 158
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=83.84 E-value=22 Score=36.20 Aligned_cols=80 Identities=8% Similarity=0.031 Sum_probs=58.1
Q ss_pred CCee-eecccc-h-HhhhccCCccccccccCc--hhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccc
Q 044823 342 RGLL-IRGWAP-Q-VMILSHPAVGGFLTHCGW--NSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMK 416 (497)
Q Consensus 342 ~nv~-v~~~~p-q-~~lL~~~~~~~~ItHgG~--gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~ 416 (497)
+|++ ..++.+ + ..++..|++-+-|+||+- .++.||+.+|+|++..=...... ..+. . |-.....
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~-~---g~l~~~~---- 396 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIA-S---ENIFEHN---- 396 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---cccc-C---CceecCC----
Confidence 5555 555677 3 569999999999999874 69999999999999865443221 2221 2 4444433
Q ss_pred cccccccccccCHHHHHHHHHHHhcCC
Q 044823 417 FGEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 417 ~~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
+.+++.++|.++|+|+
T Consensus 397 -----------~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 397 -----------EVDQLISKLKDLLNDP 412 (438)
T ss_pred -----------CHHHHHHHHHHHhcCH
Confidence 6899999999999987
No 159
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=81.26 E-value=5.4 Score=32.23 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=38.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHH
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLA 55 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (497)
.|+++.+.+..-|-.-+..||..|.++||+|.++-.......+.+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~ 48 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR 48 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh
Confidence 479999999999999999999999999999999966654444544443
No 160
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=80.30 E-value=11 Score=35.19 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=27.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
||||+..=-+. |---+..|+++|++ +|+|+++.|....+
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46777665443 33348889999975 68999999886554
No 161
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=80.28 E-value=2.4 Score=35.06 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=33.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
|||++...++.+=+. ...+.++|.++|++|.++.++....
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~ 40 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAER 40 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHH
Confidence 589999999877777 9999999999999999999885443
No 162
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=79.81 E-value=19 Score=32.19 Aligned_cols=51 Identities=10% Similarity=-0.076 Sum_probs=43.4
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
.+.+|++.+.++..|-....-++..|..+|++|+++....-.+.+.+.+..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~ 133 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK 133 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999999999999999999887666666665543
No 163
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=76.94 E-value=14 Score=34.34 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=28.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
||||+..=-+. |---+..|+++|.+. |+|+++.|....+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 46666655443 344578899999998 7999999885544
No 164
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=76.44 E-value=9.1 Score=42.28 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=63.1
Q ss_pred HhhhccCCcccccc---ccCch-hHHHHHHhCCc---EeccCCcccchhhHHHHHHHHc-ceeEeccccccccccccccc
Q 044823 353 VMILSHPAVGGFLT---HCGWN-SSLEGISAGVQ---MLTWPLFTDQFCNEKLIVEVLR-IGVSVGVEVPMKFGEEEKIG 424 (497)
Q Consensus 353 ~~lL~~~~~~~~It---HgG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~~~e~~G-~G~~l~~~~~~~~~~~~~~~ 424 (497)
.+++..+++ ||. .-|+| ...|++++|+| ++++.-++ ..+. .+| -|+.++..
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVnP~------------ 428 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVNPW------------ 428 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEECCC------------
Confidence 357777787 764 45887 66799999999 44444332 2222 233 46666654
Q ss_pred cccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhcc
Q 044823 425 VLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYHATA 485 (497)
Q Consensus 425 ~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 485 (497)
+.++++++|.++|+.++ +..+++.+++.+..+ .-+...-++.|+..+....
T Consensus 429 ---D~~~lA~AI~~aL~m~~--~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 429 ---NITEVSSAIKEALNMSD--EERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred ---CHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 88999999999998331 122334444444433 3355666777887775554
No 165
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=76.07 E-value=11 Score=33.45 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=49.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchh-hhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQH--GATATIVTTPVNAA-RFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
.++-+-..+.|-++-...|+++|.++ |+.|.+-++..... ..++... ..+....+|+|
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc-------------
Confidence 45556677889999999999999998 89988887744333 2322211 12333333321
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEE-ECC-CCcchHHHHHHcCCCeEEEe
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCII-SDM-CIPWTVDTAAKFNVPRIIFH 146 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI-~D~-~~~~a~~~A~~lgIP~i~~~ 146 (497)
....++.+++. ++||++| ++. +.+.-...|++.|||.+.+.
T Consensus 83 ------------------~~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ------------------FPWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ------------------SHHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ------------------CHHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 11245566777 8999776 554 32344557778899999864
No 166
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.01 E-value=5.9 Score=37.36 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=50.3
Q ss_pred cccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchh--hHHHHHHHHcceeEecccccccccccccccc
Q 044823 348 GWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFC--NEKLIVEVLRIGVSVGVEVPMKFGEEEKIGV 425 (497)
Q Consensus 348 ~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~ 425 (497)
.|-...++|.++++ .|--.| ..+-+++--|||+|.+|-.+-|+. .|.+=..-+|..+.+-..
T Consensus 301 sqqsfadiLH~ada--algmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~------------- 364 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP------------- 364 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-------------
Confidence 44445667777666 443333 123456778999999999999854 454442334555555332
Q ss_pred ccCHHHHHHHHHHHhcCChhhHHHH
Q 044823 426 LVKKEDVETAINILMDDGEERDGRR 450 (497)
Q Consensus 426 ~~~~~~l~~ai~~vl~~~~~~~~~~ 450 (497)
.++.-..+..++|.|++.-+.+|
T Consensus 365 --~aq~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 365 --EAQAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred --chhhHHHHHHHHhcChHHHHHHH
Confidence 34444455556999994444444
No 167
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=75.90 E-value=4.5 Score=36.12 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=64.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCC-CCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCE-NFD 86 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~-~~~ 86 (497)
||||+..=-+. +---+..|+++|.+.||+|+++.|....+-.-..+. ....++......+ ..+.+.. ..-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit----~~~pl~~~~~~~~----~~~~~~~~~~v 71 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSIT----LHKPLRVTEVEPG----HDPGGVEAYAV 71 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-T----TCCSTTEEEEE
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeec----CCCCeEEEEEEec----ccCCCCCEEEE
Confidence 67888877766 566788999999888999999999866553322221 1123444332100 0001100 000
Q ss_pred CCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECC----------C---CcchHHHHHHcCCCeEEEech
Q 044823 87 MLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDM----------C---IPWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~----------~---~~~a~~~A~~lgIP~i~~~~~ 148 (497)
.. ... +...-.+..++.+ .+||+||+-. + +.+|..-|...|||.|.+|..
T Consensus 72 ~G---TPa-------Dcv~~al~~~~~~--~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 72 SG---TPA-------DCVKLALDGLLPD--KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp SS----HH-------HHHHHHHHCTSTT--SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred cC---cHH-------HHHHHHHHhhhcc--CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 00 001 1122234445554 4699999742 1 134666777889999998654
No 168
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=75.09 E-value=11 Score=33.72 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=41.6
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHH
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLA 55 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (497)
++.||++.+.++..|-....-++..|..+|++|+++......+.+.+.+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~ 130 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK 130 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999999999999999999998876655555555543
No 169
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=75.06 E-value=56 Score=31.87 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=82.5
Q ss_pred EEEeeCCcccCCHhhHHHHHHHHHh---CCCCeEEEEeCCCc-hhhhhhhhchhhHHHHh-cCCCee-eecccc---hHh
Q 044823 284 VYVCLGSICNLTSSQLIELGLGLEA---SKKPFIWVSRVGNK-LEELEKWLVEENFEERI-KGRGLL-IRGWAP---QVM 354 (497)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~-~~~~~~~~lp~~~~~~~-~~~nv~-v~~~~p---q~~ 354 (497)
+.|=.|-....+...++ +++++.. .+.+++.-++-+.. .+=-++ + ....++. ..+|+. ..+++| +..
T Consensus 186 ltILvGNSgd~sNnHie-aL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~--V-~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 186 LTILVGNSGDPSNNHIE-ALEALKQQFGDDVKIIVPLSYGANNQAYIQQ--V-IQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred eEEEEcCCCCCCccHHH-HHHHHHHhcCCCeEEEEECCCCCchHHHHHH--H-HHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 55556666654443333 3334442 35677777666532 110000 1 1111222 235765 456887 567
Q ss_pred hhccCCccccccc--cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHH
Q 044823 355 ILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDV 432 (497)
Q Consensus 355 lL~~~~~~~~ItH--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 432 (497)
+|..++++.|.+. =|+|+++-.++.|+|+++- .+-+.+ .-+. +.|+=+.-..+ .++.+.|
T Consensus 262 lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l~-~~~ipVlf~~d-------------~L~~~~v 323 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDLK-EQGIPVLFYGD-------------ELDEALV 323 (360)
T ss_pred HHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHHH-hCCCeEEeccc-------------cCCHHHH
Confidence 9999999888775 5899999999999999874 233433 3442 55666655544 7999999
Q ss_pred HHHHHHHhc
Q 044823 433 ETAINILMD 441 (497)
Q Consensus 433 ~~ai~~vl~ 441 (497)
+++=+++.+
T Consensus 324 ~ea~rql~~ 332 (360)
T PF07429_consen 324 REAQRQLAN 332 (360)
T ss_pred HHHHHHHhh
Confidence 999887753
No 170
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.90 E-value=9 Score=40.06 Aligned_cols=79 Identities=10% Similarity=-0.033 Sum_probs=47.9
Q ss_pred hHhhhccCCcccccc---ccCch-hHHHHHHhCCcEeccCCcc-cchhhHHHHHHHH-cceeEecccccccccccccccc
Q 044823 352 QVMILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFT-DQFCNEKLIVEVL-RIGVSVGVEVPMKFGEEEKIGV 425 (497)
Q Consensus 352 q~~lL~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~-DQ~~na~~~~e~~-G~G~~l~~~~~~~~~~~~~~~~ 425 (497)
..+++.-+++ ||. +=|+| ++.||+++|+|+|.....+ ... ...+.+.- ..|+.+....+.. -
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~~~~~gi~V~~r~~~~--------~ 535 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIEDPESYGIYIVDRRFKS--------P 535 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhccCCCceEEEecCCccc--------h
Confidence 5566777777 554 45655 8999999999999977643 222 11121111 2567665331111 1
Q ss_pred ccCHHHHHHHHHHHhcC
Q 044823 426 LVKKEDVETAINILMDD 442 (497)
Q Consensus 426 ~~~~~~l~~ai~~vl~~ 442 (497)
.-+.++|++++.++++.
T Consensus 536 ~e~v~~La~~m~~~~~~ 552 (590)
T cd03793 536 DESVQQLTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 23567888889888854
No 171
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=73.59 E-value=37 Score=31.62 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=27.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
||||+..=-+. |---+..|+++|++ +|+|+++.|....+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46666665544 33457788999975 68999999886554
No 172
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=73.50 E-value=3.9 Score=31.64 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHHHHHHHh
Q 044823 24 MFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFLTSLQK 103 (497)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (497)
++.+|+.|.+.|++ +++++.+...+++. ++....+-.. .+.++. . ..+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~---------Gi~~~~v~~~---~~~~~~---~----~g~~---------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH---------GIEVTEVVNK---IGEGES---P----DGRV---------- 50 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT---------T--EEECCEE---HSTG-G---G----THCH----------
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc---------CCCceeeeee---cccCcc---C----Cchh----------
Confidence 57899999999955 56667666555544 6664443100 000000 0 0000
Q ss_pred chHHHHHHHhhcCCCCeEEEECCCCcch---------HHHHHHcCCCeE
Q 044823 104 LQLPFENLFREQTPQPCCIISDMCIPWT---------VDTAAKFNVPRI 143 (497)
Q Consensus 104 ~~~~l~~~l~~~~~~~D~vI~D~~~~~a---------~~~A~~lgIP~i 143 (497)
.+.+++++ .++|+||.-+..... ..+|...+||++
T Consensus 51 ---~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 ---QIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---HHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 66777887 899999977643211 346777788875
No 173
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.12 E-value=9.7 Score=31.82 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=39.2
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARF 50 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (497)
++++||++.+.+..||=.-..-+++.|++.|.+|.....-...+.+
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 4689999999999999999999999999999999987654433333
No 174
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=72.98 E-value=77 Score=30.46 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=78.8
Q ss_pred EEEeeCCcccCCHhhHHHHHHHHH---hCCCCeEEEEeCC-CchhhhhhhhchhhHHHHhcC-CCee-eecccc---hHh
Q 044823 284 VYVCLGSICNLTSSQLIELGLGLE---ASKKPFIWVSRVG-NKLEELEKWLVEENFEERIKG-RGLL-IRGWAP---QVM 354 (497)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~-~~~~~~~~~~lp~~~~~~~~~-~nv~-v~~~~p---q~~ 354 (497)
+-|=.|-....+...+ ++++++. ..+.+++.-++-+ .+..=-++ + .....++-+ +++. ..+++| +..
T Consensus 147 ~tIlvGNSgd~SN~Hi-e~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~--V-~~~~~~lF~~~~~~~L~e~l~f~eYl~ 222 (322)
T PRK02797 147 MTILVGNSGDRSNRHI-EALRALHQQFGDNVKIIVPMGYPANNQAYIEE--V-RQAGLALFGAENFQILTEKLPFDDYLA 222 (322)
T ss_pred eEEEEeCCCCCcccHH-HHHHHHHHHhCCCeEEEEECCcCCCCHHHHHH--H-HHHHHHhcCcccEEehhhhCCHHHHHH
Confidence 3344565554444333 3444443 3344677666653 11100000 1 111122223 5655 455666 577
Q ss_pred hhccCCccccccc--cCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHH
Q 044823 355 ILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDV 432 (497)
Q Consensus 355 lL~~~~~~~~ItH--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 432 (497)
+|++++++.|+|+ =|.|+++-.++.|||+++-- +-+.+.. +. +.|+=+-.+.+ .++...+
T Consensus 223 lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~-e~gv~Vlf~~d-------------~L~~~~v 284 (322)
T PRK02797 223 LLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LT-EQGLPVLFTGD-------------DLDEDIV 284 (322)
T ss_pred HHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HH-hCCCeEEecCC-------------cccHHHH
Confidence 9999999988886 48999999999999998753 3344444 42 66766655555 6888888
Q ss_pred HHHHHHH
Q 044823 433 ETAINIL 439 (497)
Q Consensus 433 ~~ai~~v 439 (497)
.++=+++
T Consensus 285 ~e~~rql 291 (322)
T PRK02797 285 REAQRQL 291 (322)
T ss_pred HHHHHHH
Confidence 7775543
No 175
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.73 E-value=6 Score=32.11 Aligned_cols=37 Identities=5% Similarity=-0.048 Sum_probs=25.7
Q ss_pred cEEEEecCCCcC---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQG---HLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~G---Hv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|||+|+.-|-.+ .-.-.+.|+.+-.+|||+|.++.+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 578888777544 3456788999999999999999776
No 176
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=72.40 E-value=6.3 Score=35.09 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=35.1
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNA 47 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (497)
.+.+||++--.|+.|=+.-...|++.|.++||+|+++.++...
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 3567899888887665555799999999999999999988433
No 177
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=71.38 E-value=63 Score=32.94 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEe
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFH 146 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~ 146 (497)
++.+.++. .+||++|..+ ....+|+++|||++.+.
T Consensus 368 e~~~~i~~--~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFT--EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhh--cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 45566666 7999999885 46789999999998753
No 178
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.23 E-value=93 Score=29.29 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=53.1
Q ss_pred CCCeeeecccc---hHhhhccCCccccccc---cCchh-HHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccc
Q 044823 341 GRGLLIRGWAP---QVMILSHPAVGGFLTH---CGWNS-SLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEV 413 (497)
Q Consensus 341 ~~nv~v~~~~p---q~~lL~~~~~~~~ItH---gG~gs-~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~ 413 (497)
.+++...++++ ...++..+++ ++.- .|.|. +.||+++|+|+|... .......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCC-
Confidence 46788888888 2446766766 5555 46654 599999999996544 33333344 2333466 4322
Q ss_pred ccccccccccccccCHHHHHHHHHHHhcCC
Q 044823 414 PMKFGEEEKIGVLVKKEDVETAINILMDDG 443 (497)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 443 (497)
.+.+++..++..++++.
T Consensus 327 -------------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 -------------GDVEELADALEQLLEDP 343 (381)
T ss_pred -------------CCHHHHHHHHHHHhcCH
Confidence 26889999999999875
No 179
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=70.65 E-value=13 Score=30.35 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=38.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVL 54 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~ 54 (497)
||++.+.++..|..-..-++.-|..+|++|.+.....-.+.+.+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a 46 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAA 46 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999998765444454443
No 180
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=69.88 E-value=26 Score=31.43 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=77.5
Q ss_pred CeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCC
Q 044823 281 SSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPA 360 (497)
Q Consensus 281 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 360 (497)
++++.|+.|.+. ...++.|...+..+.+... .. .+.+........+.......+..-+..++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~~----------~~~l~~l~~~~~i~~~~~~~~~~~l~~ad 72 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-EL----------TENLVKLVEEGKIRWKQKEFEPSDIVDAF 72 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-CC----------CHHHHHHHhCCCEEEEecCCChhhcCCce
Confidence 458888777655 3345566667777666542 21 11121211223444444444455566777
Q ss_pred ccccccccCchhHHHHHH----hCCcEeccCCcccchhh-----HHHHHHHHcceeEeccccccccccccccccccCHHH
Q 044823 361 VGGFLTHCGWNSSLEGIS----AGVQMLTWPLFTDQFCN-----EKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKED 431 (497)
Q Consensus 361 ~~~~ItHgG~gs~~eal~----~GvP~l~~P~~~DQ~~n-----a~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (497)
+ +|.--+--.+.+.++ .++++-+ .|.+.. -..+ ++-++-+.+... ++. -.-+..
T Consensus 73 l--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~---------G~s-P~la~~ 135 (202)
T PRK06718 73 L--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD---------GAS-PKLAKK 135 (202)
T ss_pred E--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC---------CCC-hHHHHH
Confidence 6 777666555555443 4554333 343322 2233 243444444433 001 223355
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 044823 432 VETAINILMDDGEERDGRRRRAKEFGELAKRA 463 (497)
Q Consensus 432 l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~ 463 (497)
|++.|.+++ +++.+.+-+.+.++++.+++.
T Consensus 136 lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 136 IRDELEALY--DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHc--chhHHHHHHHHHHHHHHHHHh
Confidence 777787777 555667788888888887754
No 181
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=69.09 E-value=12 Score=27.76 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=32.6
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
..-++++..+...|..-+-.+|+.|+++|+.|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 477899999999999999999999999999998763
No 182
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=68.42 E-value=29 Score=32.50 Aligned_cols=37 Identities=5% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCCeEEEECCCCc------chHHHHHHcCCCeEEE
Q 044823 107 PFENLFREQTPQPCCIISDMCIP------WTVDTAAKFNVPRIIF 145 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~------~a~~~A~~lgIP~i~~ 145 (497)
.+.+++++ .++|+||--..-+ -+..+|+.+|||++.+
T Consensus 56 ~l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 56 ELREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 35667777 7899877332212 2457899999999996
No 183
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=68.26 E-value=55 Score=28.72 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=55.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCe--EEEE-eCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGAT--ATIV-TTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~--Vt~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
|||+|+.+++. ..+..+.++|.+++|+ |.++ +.+........... .++....+.. ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~--------~~--- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADE--------KN--- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHG--------GG---
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccc--------cC---
Confidence 68999877664 5567778899999998 4443 44432221111111 1222222210 00
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCC-cchHHHHHHcCCCeEEEec
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCI-PWTVDTAAKFNVPRIIFHG 147 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~a~~~A~~lgIP~i~~~~ 147 (497)
+........++.+.+++ .+||++|+-.+. .-...+-......++.+++
T Consensus 61 -------------~~~~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 61 -------------FQPRSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp -------------SSSHHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred -------------CCchHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 00111234466777888 899999877654 3344455666667777654
No 184
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=66.18 E-value=45 Score=25.27 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=22.9
Q ss_pred HHHHHhhcCCCCeEEEECCC--C-------cchHHHHHHcCCCeE
Q 044823 108 FENLFREQTPQPCCIISDMC--I-------PWTVDTAAKFNVPRI 143 (497)
Q Consensus 108 l~~~l~~~~~~~D~vI~D~~--~-------~~a~~~A~~lgIP~i 143 (497)
+.+.++. .++|+||.-+. . ..-...|...|||++
T Consensus 47 i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 5566777 89999997542 1 123456888888875
No 185
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=65.52 E-value=28 Score=32.40 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCeEEE--ECCCCc----chHHHHHHcCCCeEEE
Q 044823 106 LPFENLFREQTPQPCCII--SDMCIP----WTVDTAAKFNVPRIIF 145 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI--~D~~~~----~a~~~A~~lgIP~i~~ 145 (497)
+.+.+++++ .++++|| +.+|.. -+..+|+.+|||++.+
T Consensus 56 ~~l~~~l~~--~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 56 EGLAEFLRE--NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHh--CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 356667777 8999988 444441 3567899999999996
No 186
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=64.55 E-value=81 Score=32.37 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=31.0
Q ss_pred CcEEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 7 NFHFILLPFL-AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+.+|++.... .-|-..-...|++.|+++|++|..+-+.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 4467776554 5889999999999999999999998663
No 187
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=64.43 E-value=79 Score=32.76 Aligned_cols=50 Identities=6% Similarity=-0.071 Sum_probs=43.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARA 57 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~ 57 (497)
--+++.-.|+.|-..=.++++.+.+++|..|.+++.++....+.....+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc
Confidence 45777788899999999999999999999999999998888887776553
No 188
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=64.09 E-value=1.1e+02 Score=30.52 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=36.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTV 53 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (497)
=+++.-.|+.|-..=++.+|..++.+|..|.+++.+.....+...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~R 128 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLR 128 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHH
Confidence 356666779999999999999999999999999888666555443
No 189
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.02 E-value=1.7e+02 Score=29.60 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=45.8
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEE
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIE 68 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (497)
++-.|+++-.=+.|-..-.-.||+.|..+|+.|.+++...+.+...+++...... .++.|+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q-~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ-VGVPFFG 160 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH-cCCceec
Confidence 3455666666799999999999999999999999999987776665555443211 2455554
No 190
>PRK06321 replicative DNA helicase; Provisional
Probab=63.42 E-value=98 Score=31.94 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=34.4
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQ-HGATATIVTTPVNAARF 50 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~~~~~~~ 50 (497)
+++..-|+.|-..-.+.+|...+. .|..|.|++.+.....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 567788899999999999999874 59999999988665544
No 191
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=63.36 E-value=88 Score=28.03 Aligned_cols=86 Identities=13% Similarity=0.008 Sum_probs=46.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHG--ATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
|||+++..+.-+-+ .+|.+++.+.+ ++|.++.+........+.... .++.+..++. ....
T Consensus 2 ~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~--------~~~~-- 63 (200)
T PRK05647 2 KRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDH--------KDFP-- 63 (200)
T ss_pred ceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECc--------cccC--
Confidence 78999998774433 35666677664 777776444222223333222 2666665431 1100
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCC
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMC 127 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~ 127 (497)
........+.+.++. .++|++|+-.+
T Consensus 64 --------------~~~~~~~~~~~~l~~--~~~D~iv~~~~ 89 (200)
T PRK05647 64 --------------SREAFDAALVEALDA--YQPDLVVLAGF 89 (200)
T ss_pred --------------chhHhHHHHHHHHHH--hCcCEEEhHHh
Confidence 011123355666777 79999987544
No 192
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=63.29 E-value=23 Score=33.42 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=34.9
Q ss_pred CeeeecccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCC
Q 044823 343 GLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 343 nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~ 388 (497)
.+.+.+-++-..++.+++. +||-.+ ..-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 3445567788899999998 888765 477899999999999875
No 193
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=62.92 E-value=28 Score=31.53 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
++.||++.+.++..|-....-++..|..+|++|.++....-.+.+.+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~ 137 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE 137 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999999999999999999877655566555543
No 194
>PRK05595 replicative DNA helicase; Provisional
Probab=62.13 E-value=75 Score=32.51 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=35.0
Q ss_pred EEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhHH
Q 044823 10 FILLPFLAQGHLIPMFDIARLLA-QHGATATIVTTPVNAARFKT 52 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~-~rGh~Vt~~~~~~~~~~~~~ 52 (497)
+++..-|+.|-..-.+.+|..++ ++|+.|.|++.+.....+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 56677889999999999999876 56999999999876555433
No 195
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=61.67 E-value=62 Score=27.44 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=69.4
Q ss_pred EEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccc
Q 044823 284 VYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGG 363 (497)
Q Consensus 284 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~ 363 (497)
|-|=+||.. +....+++...|+..+..+-....+.+. .|+.+.+ |+....- ..+++
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR--------~p~~l~~-----------~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR--------TPERLLE-----------FVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT--------SHHHHHH-----------HHHHTTT-TTESE--
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--------CHHHHHH-----------HHHHhcc-CCCEE--
Confidence 555567665 5677888899999988777666655443 2322211 1111100 11233
Q ss_pred cccccCch----hHHHHHHhCCcEeccCCcccchhhH----HHHHHHHcceeEeccccccccccccccccccCHHHHHHH
Q 044823 364 FLTHCGWN----SSLEGISAGVQMLTWPLFTDQFCNE----KLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETA 435 (497)
Q Consensus 364 ~ItHgG~g----s~~eal~~GvP~l~~P~~~DQ~~na----~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 435 (497)
||.=.|.. ++.-++ .-.|+|.+|....+.... ..+.-=.|+++..-.- ++-.++.-+...
T Consensus 59 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-----------~~~~nAA~~A~~ 126 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-----------NNGFNAALLAAR 126 (150)
T ss_dssp EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-----------THHHHHHHHHHH
T ss_pred EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-----------cCchHHHHHHHH
Confidence 77777754 344444 378999999987754322 2221012444333210 013455555555
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHH
Q 044823 436 INILMDDGEERDGRRRRAKEFGELAKR 462 (497)
Q Consensus 436 i~~vl~~~~~~~~~~~~a~~~~~~~~~ 462 (497)
|-.+ .|+ .++++.+..++.+++
T Consensus 127 ILa~-~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 127 ILAL-KDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHT-T-H----HHHHHHHHHHHHHHH
T ss_pred HHhc-CCH----HHHHHHHHHHHHHHc
Confidence 5443 455 778888887777664
No 196
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=61.50 E-value=1.1e+02 Score=27.29 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch---hhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNA---ARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGC 82 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 82 (497)
++-.|.+++..+.|-....+.+|-+.+.+|+.|.++-.-... ... ..+. ...++.+...+.+ + ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~-~~l~----~l~~v~~~~~g~~-----~--~~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGER-NLLE----FGGGVEFHVMGTG-----F--TW 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHH-HHHh----cCCCcEEEECCCC-----C--cc
Confidence 456899999999999999999999999999999988442111 111 1111 1136777765421 1 11
Q ss_pred CCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCC
Q 044823 83 ENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCI 128 (497)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 128 (497)
.. . +. . .-...........++.+.+ .++|+||-|-..
T Consensus 89 ~~--~-~~-~---e~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~ 125 (191)
T PRK05986 89 ET--Q-DR-E---RDIAAAREGWEEAKRMLAD--ESYDLVVLDELT 125 (191)
T ss_pred cC--C-Cc-H---HHHHHHHHHHHHHHHHHhC--CCCCEEEEehhh
Confidence 11 0 11 1 1112233445555666666 899999999654
No 197
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.35 E-value=71 Score=28.74 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=76.8
Q ss_pred CeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCC
Q 044823 281 SSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPA 360 (497)
Q Consensus 281 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 360 (497)
++++.|..|.+. ..-++.|.+.|..+.+....... .+.+-....++....--.+...+..+.
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~~-----------~l~~l~~~~~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELES-----------ELTLLAEQGGITWLARCFDADILEGAF 71 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCCH-----------HHHHHHHcCCEEEEeCCCCHHHhCCcE
Confidence 357888777555 33355666778887766433221 111111133554422222233456666
Q ss_pred ccccccccCchhHH-----HHHHhCCcE--eccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHH
Q 044823 361 VGGFLTHCGWNSSL-----EGISAGVQM--LTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVE 433 (497)
Q Consensus 361 ~~~~ItHgG~gs~~-----eal~~GvP~--l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 433 (497)
+ +|..=|...+. +|-..|+|+ +--|-..|= ..-..+ ++-++=+.+... ++. -.-+..|+
T Consensus 72 l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f-~~pa~~-~~g~l~iaisT~---------G~s-P~la~~lr 137 (205)
T TIGR01470 72 L--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSF-IFPSIV-DRSPVVVAISSG---------GAA-PVLARLLR 137 (205)
T ss_pred E--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeE-EEeeEE-EcCCEEEEEECC---------CCC-cHHHHHHH
Confidence 6 77777765443 344568887 334444442 223334 233344444433 011 12345688
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 044823 434 TAINILMDDGEERDGRRRRAKEFGELAKRA 463 (497)
Q Consensus 434 ~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~ 463 (497)
+.|.+++. +....+-+...++++.+++.
T Consensus 138 ~~ie~~l~--~~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 138 ERIETLLP--PSLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHhcc--hhHHHHHHHHHHHHHHHHhh
Confidence 88888883 33346667777777776654
No 198
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=61.34 E-value=6 Score=34.97 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=26.5
Q ss_pred CcEEEEecCCCcCCHHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 044823 7 NFHFILLPFLAQGHLIPM------------FDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~------------l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
.+||++...|+.=.+.|. ..||+++..+|++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 456666666665555442 689999999999999999883
No 199
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.18 E-value=90 Score=30.34 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=33.2
Q ss_pred cEEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 8 FHFILLPF-LAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 8 ~~vl~~~~-p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
+||+|++. ++-|-..-..++|-.|++.|..|.++++...++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 46777766 479999999999999999999888887765443
No 200
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.44 E-value=51 Score=28.38 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=35.0
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.+|||.+.-.|+.|-..-.+.+++.|.+.|+.|-=+-++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 478999999999999999999999999999999855444
No 201
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.26 E-value=1.1e+02 Score=29.71 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEE
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIE 68 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (497)
.++--|+|+-.-+.|-..-.-.||..|.+.|+.|.++.....++...+++.-.+.. .++.++.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-~gv~vI~ 199 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-LGVPVIS 199 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH-hCCeEEc
Confidence 34566777778899999999999999999999999999887666555555443322 2566664
No 202
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=60.26 E-value=36 Score=29.70 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=39.3
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
+++.-.|+.|-..=.+.++...++.|..|.+++.+.....+.+...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHH
Confidence 56777889999999999999999999999999998877766555443
No 203
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=59.97 E-value=84 Score=24.78 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHHH
Q 044823 19 GHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFL 98 (497)
Q Consensus 19 GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (497)
++-.-++.+++.|.+.|+++ ++++.+...+++. ++....+.. ...
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~---------gi~~~~v~~------~~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQEA---------GIPVEVVNK------VSE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHc---------CCeEEEEee------cCC------------------
Confidence 45667889999999999988 3456555444443 566554421 000
Q ss_pred HHHHhchHHHHHHHhhcCCCCeEEEECCC-------CcchHHHHHHcCCCeEE
Q 044823 99 TSLQKLQLPFENLFREQTPQPCCIISDMC-------IPWTVDTAAKFNVPRII 144 (497)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~-------~~~a~~~A~~lgIP~i~ 144 (497)
....+.+.+++ .++|+||.-+- .+...-.|-..|||++.
T Consensus 55 -----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 11345666677 89999997432 13455678899999985
No 204
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.90 E-value=85 Score=31.93 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 106 LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
.++.+.+++ .+||++|.+.. ...+|+++|+|++.+
T Consensus 361 ~el~~~i~~--~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKE--EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhc--cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 355667777 79999999964 467899999999875
No 205
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.04 E-value=43 Score=27.79 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=45.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEe
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEI 69 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i 69 (497)
.+|++-+..+.+|-.----++..|.++|++|.........+.+-+.+... +..++.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~-----~adiVgl 58 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET-----KADAILV 58 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----CCCEEEE
Confidence 58999999999999999999999999999999998776666665554332 4555554
No 206
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=58.84 E-value=55 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=20.4
Q ss_pred ccccccCc------hhHHHHHHhCCcEeccCC
Q 044823 363 GFLTHCGW------NSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 363 ~~ItHgG~------gs~~eal~~GvP~l~~P~ 388 (497)
++++|.|- +++.+|...++|+|++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 36777664 477899999999999964
No 207
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=58.31 E-value=1.1e+02 Score=26.28 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=21.0
Q ss_pred cccccCch------hHHHHHHhCCcEeccCC
Q 044823 364 FLTHCGWN------SSLEGISAGVQMLTWPL 388 (497)
Q Consensus 364 ~ItHgG~g------s~~eal~~GvP~l~~P~ 388 (497)
+++|+|-| ++.+|...++|+|++.-
T Consensus 67 ~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 67 CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 88887744 78899999999999963
No 208
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=58.11 E-value=1.3e+02 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCCeEE-EECCCC-cchHHHHHHcCCCeEEEec
Q 044823 117 PQPCCI-ISDMCI-PWTVDTAAKFNVPRIIFHG 147 (497)
Q Consensus 117 ~~~D~v-I~D~~~-~~a~~~A~~lgIP~i~~~~ 147 (497)
.-||++ |.|+.. --|..=|.++|||.|.+.-
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 459976 578754 4677889999999999643
No 209
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=57.88 E-value=76 Score=31.76 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=39.3
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
=|++---|+-|--.=+|+++..|+++| .|.+++.++....++-...+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~R 141 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADR 141 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHH
Confidence 466667789999999999999999999 99999999877776655544
No 210
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=57.54 E-value=31 Score=31.76 Aligned_cols=98 Identities=7% Similarity=0.095 Sum_probs=52.8
Q ss_pred CeEEEEeeCCccc---CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecc--cch-Hh
Q 044823 281 SSVVYVCLGSICN---LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGW--APQ-VM 354 (497)
Q Consensus 281 ~~vv~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~--~pq-~~ 354 (497)
++.|.+..|+... .+.+.+.++++.|.+.+++++...+...... + .-..+.+......+.+.+- +.| ..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEK---E--IADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHH---H--HHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHH---H--HHHHHHHhcccceEeecCCCCHHHHHH
Confidence 4567777777554 5688899999999888866554443322111 1 1111111111112333332 334 56
Q ss_pred hhccCCccccccccCchhHHHHHHhCCcEecc
Q 044823 355 ILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 386 (497)
Q Consensus 355 lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~ 386 (497)
++.++++ +|+.-. |.++=|.+.|+|+|++
T Consensus 180 li~~a~~--~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADL--VIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSE--EEEESS-HHHHHHHHTT--EEEE
T ss_pred HHhcCCE--EEecCC-hHHHHHHHHhCCEEEE
Confidence 8889998 888754 7888899999999988
No 211
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=57.49 E-value=1.1e+02 Score=31.21 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=24.2
Q ss_pred HHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 111 LFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 111 ~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
.+++ .+||++|..+ -+..+|+++|||.+.+
T Consensus 350 ~l~~--~~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 350 AVLE--FEPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred HHhh--CCCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 4455 7999999883 3566899999999985
No 212
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=57.44 E-value=14 Score=32.60 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=34.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARF 50 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (497)
+||++...++.|=+. ...+.+.|.++|++|.++.++.....+
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 578888888877665 799999999999999999988554433
No 213
>PRK08506 replicative DNA helicase; Provisional
Probab=56.65 E-value=1.3e+02 Score=31.08 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=36.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKT 52 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (497)
=+++..-|+.|-..-.+.+|...+..|+.|.|++.+.....+..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHH
Confidence 46777888999999999999999889999999999876655433
No 214
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=56.46 E-value=1.5e+02 Score=28.07 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=33.7
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVN 46 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~ 46 (497)
+..|+|+..++.|-..-...||..|++.|+.|.++....+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3456666666999999999999999999999999987654
No 215
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=56.14 E-value=40 Score=30.92 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=38.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
--+++.-.++.|...-..+++...+.+|..|.|++.+.....+.+....
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHH
Confidence 3466667779999999999988888899999999998766655554433
No 216
>PRK09165 replicative DNA helicase; Provisional
Probab=54.79 E-value=1.2e+02 Score=31.64 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=35.2
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhhhHH
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQH---------------GATATIVTTPVNAARFKT 52 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~r---------------Gh~Vt~~~~~~~~~~~~~ 52 (497)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.+.....+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 6777888999999999999998754 789999999876665544
No 217
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=54.69 E-value=1.2e+02 Score=30.65 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 117 PQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 117 ~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
.+||++|.. ..+..+|+++|||.+.+
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~ 374 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYY 374 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEe
Confidence 699999987 44777999999999885
No 218
>PRK11823 DNA repair protein RadA; Provisional
Probab=54.33 E-value=1.8e+02 Score=29.85 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=37.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVL 54 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~ 54 (497)
-+++.-.|+.|-..=++++|..++++|..|.+++.+...+.+....
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra 127 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRA 127 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHH
Confidence 4567777799999999999999998999999999987666554443
No 219
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=54.12 E-value=94 Score=29.16 Aligned_cols=112 Identities=9% Similarity=0.078 Sum_probs=56.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQH---GATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
|||+..=-+. |---+..|+++|.+. |++|+++.|....+-.-..+. ....++...+. .+....
T Consensus 2 ~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT----~~~pl~~~~~~---------~~~yav 67 (261)
T PRK13931 2 RILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS----YTHPMMIAELG---------PRRFAA 67 (261)
T ss_pred eEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc----CCCCeEEEEeC---------CCeEEE
Confidence 4555443321 233456778888764 479999998865543322221 11234443321 111111
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECC----------C---CcchHHHHHHcCCCeEEEec
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDM----------C---IPWTVDTAAKFNVPRIIFHG 147 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~----------~---~~~a~~~A~~lgIP~i~~~~ 147 (497)
...|. +. ..-.+..++.+ .+||+||+-. + +.+|..-|..+|||.|.+|.
T Consensus 68 ~GTPa-DC----------V~lal~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 68 EGSPA-DC----------VLAALYDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred cCchH-HH----------HHHHHHHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 11111 11 11223334443 4799988742 2 23566777888999999875
No 220
>PRK10867 signal recognition particle protein; Provisional
Probab=53.73 E-value=82 Score=32.03 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=37.3
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHHH
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQH-GATATIVTTPVNAARFKTV 53 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~~ 53 (497)
+.-|+++-.++.|-..-...||..|+.+ |+.|.+++...+.....+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQ 147 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQ 147 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHH
Confidence 3456666666999999999999999999 9999999887665544333
No 221
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=53.71 E-value=44 Score=31.86 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=35.4
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
....+|-+.-.|+-|--.=.=.|.+.|.++||.|.+++-..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 34567889999999999999999999999999999986543
No 222
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=53.61 E-value=29 Score=35.61 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=35.4
Q ss_pred CCCcEEEEecCCCcCCHHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 044823 5 TSNFHFILLPFLAQGHLIPM------------FDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~------------l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
.+.+||++...|+.=-+.|. ..||+++..+|++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 35689999999998888875 689999999999999999773
No 223
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=53.49 E-value=16 Score=32.24 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=33.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
+||++--+++.|=+.-.+.+.+.|.+.|++|+++.++.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 37888888888888888899999999999999998874
No 224
>PRK05636 replicative DNA helicase; Provisional
Probab=53.25 E-value=82 Score=32.82 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=34.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLA-QHGATATIVTTPVNAARF 50 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~-~rGh~Vt~~~~~~~~~~~ 50 (497)
=+++..-|+.|-..-.+.+|...+ ++|..|.|++.+.....+
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 357778889999999999998876 458999999888665544
No 225
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=53.21 E-value=1.8e+02 Score=29.59 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 106 LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
.++.++++. .++|++|.++. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 466777777 79999999864 578999999999875
No 226
>PRK08760 replicative DNA helicase; Provisional
Probab=52.75 E-value=90 Score=32.28 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=35.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQ-HGATATIVTTPVNAARFKT 52 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~ 52 (497)
=+++..-|+.|-..-.+.+|...+. .|+.|.|++.+.....+..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 3677788899999999999998875 4999999998876654433
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=52.49 E-value=24 Score=33.00 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFK 51 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (497)
....++|+-.|+.|-..=..++|.+|..+|+.|+|++.+.....++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3457999999999999999999999998899999999985444333
No 228
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.37 E-value=1.6e+02 Score=29.79 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
++.+.++. .+||++|..+. ...+|+++|||++..
T Consensus 347 e~~~~i~~--~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKE--KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhh--cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 45566777 79999998843 457899999999853
No 229
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=51.85 E-value=1.7e+02 Score=25.88 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=32.7
Q ss_pred EEEEecC---C-CcCCHHH-HHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEec
Q 044823 9 HFILLPF---L-AQGHLIP-MFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQ 70 (497)
Q Consensus 9 ~vl~~~~---p-~~GHv~P-~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 70 (497)
||+++-. | .+|=+-- .=.|+..|+++||+|++++...+...-.. ...+++...+|
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeC
Confidence 5665543 2 2444433 33678888888999999987654421111 12367777765
No 230
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=51.48 E-value=1.9e+02 Score=26.18 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=38.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHH
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLA 55 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (497)
--+++.-.|+.|-..-.+.++..-+++|+.|.+++.+.....+.+...
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~ 64 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAK 64 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH
Confidence 345666777899988889998888888999999999887666655543
No 231
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.37 E-value=1.6e+02 Score=29.94 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=37.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhHHHH
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLA-QHGATATIVTTPVNAARFKTVL 54 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~-~rGh~Vt~~~~~~~~~~~~~~~ 54 (497)
+.-++++..++.|-..-...||..|. ++|..|.+++...+.....+.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL 147 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQL 147 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHH
Confidence 34566666779999999999999997 5799999998886655444433
No 232
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=51.18 E-value=1.9e+02 Score=29.85 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEE
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRII 144 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~ 144 (497)
++.+.++. .+||++|.. .....+|+++|||++.
T Consensus 384 e~~~~i~~--~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKE--AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhh--cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 44555666 799999997 4567899999999984
No 233
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.15 E-value=31 Score=29.10 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=51.6
Q ss_pred cCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHH
Q 044823 386 WPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDD-GEERDGRRRRAKEFGELAKRAL 464 (497)
Q Consensus 386 ~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~~~~~~~~~~ 464 (497)
.|+...+-.+|+.++ +. --.|+. -..+.+.+.+..++.| | +-+..+.+++..+.++
T Consensus 78 yPWt~~~L~aa~el~-ee--~eeLs~---------------deke~~~~sl~dL~~d~P----kT~vA~~rfKk~~~K~- 134 (158)
T PF10083_consen 78 YPWTENALEAANELI-EE--DEELSP---------------DEKEQFKESLPDLTKDTP----KTKVAATRFKKILSKA- 134 (158)
T ss_pred CchHHHHHHHHHHHH-HH--hhcCCH---------------HHHHHHHhhhHHHhhcCC----ccHHHHHHHHHHHHHH-
Confidence 566667777888776 21 112221 2457789999998865 5 7788899999999988
Q ss_pred hhCCChHHHHHHHHHHHhhc
Q 044823 465 EEGGSSYNNIKFFHPRYHAT 484 (497)
Q Consensus 465 ~~~g~~~~~~~~~~~~~~~~ 484 (497)
|-.....+.+++-++.+.
T Consensus 135 --g~~v~~~~~dIlVdv~SE 152 (158)
T PF10083_consen 135 --GSIVGDAIRDILVDVASE 152 (158)
T ss_pred --hHHHHHHHHHHHHHHHHH
Confidence 766677777777776544
No 234
>PRK14099 glycogen synthase; Provisional
Probab=50.95 E-value=24 Score=36.61 Aligned_cols=95 Identities=12% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCe-eeecccchHh-hh-ccCCcccccc---ccCch-hHHHHHHhCCcEeccCCcc--cchhhHHHHHHH--HcceeEec
Q 044823 342 RGL-LIRGWAPQVM-IL-SHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFT--DQFCNEKLIVEV--LRIGVSVG 410 (497)
Q Consensus 342 ~nv-~v~~~~pq~~-lL-~~~~~~~~It---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~--~G~G~~l~ 410 (497)
.++ .+.+|-.+.. ++ +.+++ ||. +=|+| +.+||+++|+|.|+....+ |--.......+. .+.|...+
T Consensus 350 ~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~ 427 (485)
T PRK14099 350 GQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS 427 (485)
T ss_pred CCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC
Confidence 444 4567733322 33 44666 664 44554 7789999997766654322 221111100001 14677775
Q ss_pred cccccccccccccccccCHHHHHHHHHH---HhcCChhhHHHHHHH
Q 044823 411 VEVPMKFGEEEKIGVLVKKEDVETAINI---LMDDGEERDGRRRRA 453 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~---vl~~~~~~~~~~~~a 453 (497)
.. +++++.++|.+ +++|++..+.+.+++
T Consensus 428 ~~---------------d~~~La~ai~~a~~l~~d~~~~~~l~~~~ 458 (485)
T PRK14099 428 PV---------------TADALAAALRKTAALFADPVAWRRLQRNG 458 (485)
T ss_pred CC---------------CHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 44 78999999987 566654333444433
No 235
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=50.92 E-value=1.4e+02 Score=26.88 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=27.8
Q ss_pred EEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 10 FILLPF-LAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 10 vl~~~~-p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
|.+... ...|-..-.+.|++.|+++|++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 444433 4689999999999999999999998864
No 236
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=50.79 E-value=1.9e+02 Score=29.23 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=35.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLA-QHGATATIVTTPVNAARFKT 52 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~-~rGh~Vt~~~~~~~~~~~~~ 52 (497)
=+++..-|+.|-..-.+.+|..++ +.|+.|.|++.+.....+..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 366777889999999999998887 67999999998866555433
No 237
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=50.56 E-value=1.9e+02 Score=29.43 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=35.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQ-HGATATIVTTPVNAARFKT 52 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~ 52 (497)
=+++...|+.|-..-.+.+|..++. .|+.|.+++.+.....+..
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 4667777899999999999999876 5999999999876665533
No 238
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.32 E-value=12 Score=32.13 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=26.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
||.++-.+..|+ ++|..|+.+||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 567777777775 78999999999999998874
No 239
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.09 E-value=2.6e+02 Score=28.68 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 106 LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
.++.+.++. .+||++|.. .....+|+++|||++.+
T Consensus 385 ~e~~~~i~~--~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLE--YKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhh--cCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 356666777 799999976 34567889999999874
No 240
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=48.81 E-value=35 Score=29.21 Aligned_cols=29 Identities=31% Similarity=0.195 Sum_probs=24.5
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhCCC
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEASKK 311 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~~~ 311 (497)
.+|+|+||........++..+++|...+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999998777778888888887765
No 241
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=48.76 E-value=52 Score=26.44 Aligned_cols=45 Identities=13% Similarity=-0.028 Sum_probs=36.4
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHH
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVL 54 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~ 54 (497)
++..+.++..|......++..|.++|++|.+.........+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i 46 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA 46 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH
Confidence 677888899999999999999999999999997655444444433
No 242
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=48.60 E-value=90 Score=29.06 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=55.8
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFD 86 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (497)
+++|+++..-+.| -.||+.|.++|+.|.+.+...+.. . ...+..... +
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~---------~~~~~~v~~-----------------G 49 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P---------ADLPGPVRV-----------------G 49 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c---------ccCCceEEE-----------------C
Confidence 3467777655555 478999999999988776653222 0 001222221 0
Q ss_pred CCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEE--ECCCCc----chHHHHHHcCCCeEEE
Q 044823 87 MLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCII--SDMCIP----WTVDTAAKFNVPRIIF 145 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI--~D~~~~----~a~~~A~~lgIP~i~~ 145 (497)
... -.+.+.+++++ .++++|| +.+|.. -+..+|+.+|||++.|
T Consensus 50 ~l~--------------~~~~l~~~l~~--~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 50 GFG--------------GAEGLAAYLRE--EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred CCC--------------CHHHHHHHHHH--CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 000 12356667777 8999988 444442 3567899999999996
No 243
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=48.39 E-value=28 Score=30.71 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=34.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQ-HGATATIVTTPVNAARF 50 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~~~~~~~ 50 (497)
+||++..+++-| ..=...|++.|.+ .||+|.++.++.....+
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 578888888877 5558999999999 49999999998554433
No 244
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=48.36 E-value=1.8e+02 Score=25.01 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=57.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE---eCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIV---TTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
-|.+++.++.|-....+.+|-+.+.+|+.|.++ ......... ..+.. .+++.+...... .....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~-~~l~~----l~~v~~~~~g~~-------~~~~~- 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGEL-KALER----LPNIEIHRMGRG-------FFWTT- 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHH-HHHHh----CCCcEEEECCCC-------CccCC-
Confidence 477888899999999999999999999999995 332111111 11211 136777764321 11111
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCC
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCI 128 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 128 (497)
. . ...-...........++.+++ .++|+||-|-+.
T Consensus 71 -~----~-~~~~~~~a~~~~~~a~~~~~~--~~~dLlVLDEi~ 105 (159)
T cd00561 71 -E----N-DEEDIAAAAEGWAFAKEAIAS--GEYDLVILDEIN 105 (159)
T ss_pred -C----C-hHHHHHHHHHHHHHHHHHHhc--CCCCEEEEechH
Confidence 0 0 111112223344455566666 799999999754
No 245
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=48.29 E-value=2e+02 Score=25.53 Aligned_cols=104 Identities=8% Similarity=-0.015 Sum_probs=52.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCC--eEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGA--TATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh--~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
+||+++..+.-+- +..|.+.+.+.++ +|.++.+........+.... .++.++.+.. ....+
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~~--------~~~~~- 63 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLSL--------KDFPS- 63 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHH-----cCCCEEEECc--------cccCc-
Confidence 5788888876444 4466677777665 66665444211122222221 2566654321 11000
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCC-cchHHHHHHcCCCeEEE
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCI-PWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~a~~~A~~lgIP~i~~ 145 (497)
.......+.+.+++ .++|++|+-.+. .-...+-......++-+
T Consensus 64 ---------------~~~~~~~~~~~l~~--~~~D~iv~~~~~~il~~~~l~~~~~~~iNi 107 (190)
T TIGR00639 64 ---------------REAFDQAIIEELRA--HEVDLVVLAGFMRILGPTFLSRFAGRILNI 107 (190)
T ss_pred ---------------hhhhhHHHHHHHHh--cCCCEEEEeCcchhCCHHHHhhccCCEEEE
Confidence 11123456667777 899999876543 23333333333344544
No 246
>PRK12342 hypothetical protein; Provisional
Probab=48.22 E-value=33 Score=32.01 Aligned_cols=39 Identities=5% Similarity=-0.098 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCeEEEECCCC-cc-----hHHHHHHcCCCeEEEec
Q 044823 107 PFENLFREQTPQPCCIISDMCI-PW-----TVDTAAKFNVPRIIFHG 147 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~-~~-----a~~~A~~lgIP~i~~~~ 147 (497)
.+.+.++. ..||+|++-..+ .. +..+|+.||+|++.+..
T Consensus 100 ~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 100 ALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 44455565 469999986644 23 78899999999998643
No 247
>PRK09620 hypothetical protein; Provisional
Probab=48.03 E-value=29 Score=31.87 Aligned_cols=39 Identities=13% Similarity=-0.045 Sum_probs=28.4
Q ss_pred CCcEEEEecCCCcCCHHHH------------HHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPM------------FDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~------------l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+.++|++...|+.=.+.|. ..||++|.++|++|+++..+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3567887776654433332 67899999999999999755
No 248
>PRK05748 replicative DNA helicase; Provisional
Probab=47.98 E-value=2e+02 Score=29.36 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=36.2
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQ-HGATATIVTTPVNAARFKT 52 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~~ 52 (497)
=+++...|+.|-..-.+.+|...+. +|+.|.|++.+.....+..
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~ 249 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVM 249 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHH
Confidence 4677888899999999999999874 5999999999876665533
No 249
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.92 E-value=1.8e+02 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=35.5
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNA 47 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (497)
+..|+|+-..+.|-..-+..||..|..+|+.|.+++.....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 45778888889999999999999999999999999886543
No 250
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=47.30 E-value=3.1e+02 Score=27.45 Aligned_cols=18 Identities=28% Similarity=0.542 Sum_probs=15.0
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 044823 426 LVKKEDVETAINILMDDG 443 (497)
Q Consensus 426 ~~~~~~l~~ai~~vl~~~ 443 (497)
.++.++|..+|.++++|.
T Consensus 300 vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 300 VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred EeccHHHHHHHHHHHHhh
Confidence 477889999999998764
No 251
>PRK05920 aromatic acid decarboxylase; Validated
Probab=47.14 E-value=28 Score=31.28 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=34.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARF 50 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (497)
++||++--.++.+= .=.+.+.+.|.+.||+|+++.++.....+
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 46888887776555 68899999999999999999988544433
No 252
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=46.93 E-value=71 Score=32.50 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVN 46 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~ 46 (497)
++||||++-.+++-| +||+.|++.++-..+++.|.|
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 468999999998877 689999999876666665633
No 253
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=46.43 E-value=3.4e+02 Score=28.18 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=68.6
Q ss_pred eeeecccchHh---hhccCCcccccc---ccCchhHH-HHHHhCCc---EeccCCcccchhhHHHHHHHHcceeEecccc
Q 044823 344 LLIRGWAPQVM---ILSHPAVGGFLT---HCGWNSSL-EGISAGVQ---MLTWPLFTDQFCNEKLIVEVLRIGVSVGVEV 413 (497)
Q Consensus 344 v~v~~~~pq~~---lL~~~~~~~~It---HgG~gs~~-eal~~GvP---~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~ 413 (497)
+++.+.+|+.. ++..+++ ++. .-|+|-+. |.++++.. +|++--++- |. +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG----aa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG----AA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc----ch---hhcCCCEEECC--
Confidence 45667777655 5556666 443 45888555 99998772 233333221 11 24444677764
Q ss_pred ccccccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccCc
Q 044823 414 PMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYHATADL 487 (497)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 487 (497)
.+.++++++|.+.|+.+. +.-+++.+++.+..+ .-++..=++.|+.++...+.|
T Consensus 433 -------------~d~~~~A~ai~~AL~m~~--~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~~~~ 486 (487)
T TIGR02398 433 -------------YDPVRMDETIYVALAMPK--AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQAQL 486 (487)
T ss_pred -------------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhcccC
Confidence 489999999999998752 122344445544444 335566677888888765543
No 254
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.34 E-value=97 Score=25.62 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=39.0
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKT 52 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (497)
+++||++.+.+..+|-.----++..|...|++|.-...-...+.+.+
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~ 47 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIAR 47 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 36899999999999999999999999999999998876544444433
No 255
>PLN02470 acetolactate synthase
Probab=46.19 E-value=55 Score=34.88 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=51.1
Q ss_pred eeCCcccCCH--hhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeee--------cccchHhhh
Q 044823 287 CLGSICNLTS--SQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIR--------GWAPQVMIL 356 (497)
Q Consensus 287 s~GS~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~--------~~~pq~~lL 356 (497)
+|||....+. ..-+.+++.|+..|.+.|+-+.+..... +-+.+. ..+++.+. .++-+.--.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~---~~~~i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALT---RSNCIRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHH
Confidence 4566555332 2245677788888888887776654321 111121 11223221 111111112
Q ss_pred ccCCccccccccCch------hHHHHHHhCCcEeccC
Q 044823 357 SHPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 387 (497)
Q Consensus 357 ~~~~~~~~ItHgG~g------s~~eal~~GvP~l~~P 387 (497)
.....+++++|.|-| ++.+|...++|+|++.
T Consensus 73 ~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 73 ASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 223445588888854 8889999999999995
No 256
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=46.19 E-value=44 Score=36.73 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=66.0
Q ss_pred eeecccchHh---hhccCCccccccc---cCch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccccc
Q 044823 345 LIRGWAPQVM---ILSHPAVGGFLTH---CGWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKF 417 (497)
Q Consensus 345 ~v~~~~pq~~---lL~~~~~~~~ItH---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~ 417 (497)
++.+++++.+ ++..+++ |+.- -|+| .+.|++++|+|-..+|+..+--.-+..+ .-|+.++..
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P~----- 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNPN----- 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECCC-----
Confidence 3556777654 6667777 6643 3665 7789999987633333333222112222 236666554
Q ss_pred ccccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhc
Q 044823 418 GEEEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYHAT 484 (497)
Q Consensus 418 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 484 (497)
+.++++++|.++|+++++ ..+++.+++++..+ .-+...-+++|+..+...
T Consensus 414 ----------d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 ----------DIEGIAAAIKRALEMPEE--EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred ----------CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 889999999999986521 22223333333332 346667777888777665
No 257
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=46.13 E-value=27 Score=32.09 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=25.5
Q ss_pred cEEEEecCCCcCCHHHH------------HHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPM------------FDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~------------l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|||++...|+.=.+.|. ..||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 35665555555444332 57889999999999998744
No 258
>PRK07773 replicative DNA helicase; Validated
Probab=45.92 E-value=1.9e+02 Score=32.67 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=36.1
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQH-GATATIVTTPVNAARFKT 52 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~ 52 (497)
=+++..-|+.|-..-.+.+|...+.+ |..|.|++.+.....+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 36777888999999999999998865 889999999876665543
No 259
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=45.83 E-value=2.4e+02 Score=25.89 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=39.4
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
.--+++.-.|+.|-..-.++++.+-+++|..|.+++.+.....+.+....
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHH
Confidence 34577788889999999999887766889999999998877666554443
No 260
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.74 E-value=1.6e+02 Score=24.73 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=20.8
Q ss_pred ccccccCc------hhHHHHHHhCCcEeccCC
Q 044823 363 GFLTHCGW------NSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 363 ~~ItHgG~------gs~~eal~~GvP~l~~P~ 388 (497)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 38888663 478899999999999964
No 261
>PRK04328 hypothetical protein; Provisional
Probab=44.90 E-value=2.2e+02 Score=26.39 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=38.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
--+++.-.|+.|-..-.++++.+-+++|+.+.+++.+.....+.+....
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHH
Confidence 4566777778999888888887767789999999998777766655443
No 262
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=44.05 E-value=1.7e+02 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=16.0
Q ss_pred HhchHHHHHHHhhcCCCCeEEEECC
Q 044823 102 QKLQLPFENLFREQTPQPCCIISDM 126 (497)
Q Consensus 102 ~~~~~~l~~~l~~~~~~~D~vI~D~ 126 (497)
..+...+.+++++ .+||+|++-.
T Consensus 86 ~~~~~~l~~~i~~--~~p~~V~t~~ 108 (128)
T PF02585_consen 86 EELVRDLEDLIRE--FRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHH--H-ESEEEEE-
T ss_pred HHHHHHHHHHHHH--cCCCEEEECC
Confidence 3456678888888 7999988654
No 263
>PRK13604 luxD acyl transferase; Provisional
Probab=43.91 E-value=51 Score=31.75 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=31.0
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
++..+++++++..++-.-+..+|+.|+++|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 4557788888888887779999999999999988763
No 264
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=43.82 E-value=2e+02 Score=24.39 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=25.3
Q ss_pred cCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 14 PFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 14 ~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
+.+.-|-..-.+.|++.|+++|.+|.++-
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k 33 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK 33 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 44578889999999999999999999973
No 265
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=43.79 E-value=27 Score=30.72 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=31.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARF 50 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (497)
||++-.+++-|-+.- ..|.+.|.++|++|.++.++.....+
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 456666666666655 88999999999999999998555433
No 266
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.76 E-value=2.4e+02 Score=25.71 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=55.6
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhh------cCCCeEEEEecCCccccCCCCCCCCCCCCCc
Q 044823 17 AQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQ------CRLQIRLIEIQFPWQEAGLPEGCENFDMLPS 90 (497)
Q Consensus 17 ~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 90 (497)
+.|--.=..+++--+...||.|++++++.+...+-...++..- ....+.|.++.. +...
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~-----------~~~~---- 102 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL-----------EPVN---- 102 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecc-----------cccc----
Confidence 5677777788899999999999999999766655554443210 111234443321 1000
Q ss_pred hhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcch
Q 044823 91 IDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPWT 131 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a 131 (497)
.-.+....+...+.+..+. ++-|++|.|+++..+
T Consensus 103 -----~~~~~~~~~L~~l~~~~k~--~~~dViIIDSls~~~ 136 (235)
T COG2874 103 -----WGRRSARKLLDLLLEFIKR--WEKDVIIIDSLSAFA 136 (235)
T ss_pred -----cChHHHHHHHHHHHhhHHh--hcCCEEEEecccHHh
Confidence 0011223344455555666 899999999987543
No 267
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=43.49 E-value=42 Score=29.02 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=27.6
Q ss_pred hchHHHHHHHhhcCCCCeEEEECCCCcchH--H-H-HH-Hc-CCCeEEEec
Q 044823 103 KLQLPFENLFREQTPQPCCIISDMCIPWTV--D-T-AA-KF-NVPRIIFHG 147 (497)
Q Consensus 103 ~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~--~-~-A~-~l-gIP~i~~~~ 147 (497)
.+...+.+++++ .+||+||+-.....+. . + .+ .+ ++|.+.+.|
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 345678888998 9999999987653333 1 1 12 23 477766543
No 268
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=43.39 E-value=2.4e+02 Score=28.93 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=36.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKT 52 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (497)
-+++.-.|+.|-..=++.++..++++|+.|.+++.+.....+..
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ 139 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKM 139 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHH
Confidence 45667777999999999999999999999999998876555543
No 269
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=42.80 E-value=30 Score=33.45 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=28.7
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.+|||+++-.++.| ..+|..|+++||+|+++...
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 46899999888887 45788899999999999865
No 270
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=42.67 E-value=44 Score=27.62 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.0
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 17 AQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 17 ~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
..-.+.-.+-|+..|.++||+|++++++.
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npA 37 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPA 37 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHH
Confidence 34455667889999999999999999993
No 271
>PRK06849 hypothetical protein; Provisional
Probab=42.65 E-value=46 Score=33.32 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=28.4
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
.+++|+++.... ...+.+|+.|.++||+|.++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467888875333 368999999999999999997653
No 272
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=42.28 E-value=80 Score=27.17 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.9
Q ss_pred cccccCch------hHHHHHHhCCcEeccCC
Q 044823 364 FLTHCGWN------SSLEGISAGVQMLTWPL 388 (497)
Q Consensus 364 ~ItHgG~g------s~~eal~~GvP~l~~P~ 388 (497)
+++|+|-| ++.||...++|+|++.-
T Consensus 64 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 64 VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 88888744 77899999999999953
No 273
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=41.88 E-value=2.6e+02 Score=30.56 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.4
Q ss_pred EEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 9 HFILLPFL-AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 9 ~vl~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.|.+.+.. ..|-..-.+.|++.|.++|.+|.++-|-
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCc
Confidence 56666555 5889999999999999999999999754
No 274
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.98 E-value=52 Score=30.76 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCCCeEEEECCCC------cchHHHHHHcCCCeEEEec
Q 044823 107 PFENLFREQTPQPCCIISDMCI------PWTVDTAAKFNVPRIIFHG 147 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~------~~a~~~A~~lgIP~i~~~~ 147 (497)
.+.+.++. ..||+||+-..+ .-+..+|+.||+|++.+..
T Consensus 103 ~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 103 ALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 44555566 579999986533 2467899999999998644
No 275
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.55 E-value=1.4e+02 Score=28.53 Aligned_cols=94 Identities=15% Similarity=0.072 Sum_probs=54.4
Q ss_pred hhhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeec
Q 044823 269 PECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRG 348 (497)
Q Consensus 269 ~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~ 348 (497)
.++........-.++-+-........+...+..+.+++++.|..+++-+|.... +.+. ... ...+
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~---------~~~~-----~~~-~~~p 180 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG---------GAGL-----EKG-HSDP 180 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC---------Cccc-----ccC-CCCc
Confidence 455666654332223322223333345556788999999999999997766432 1000 000 1122
Q ss_pred ccchHhhhccCCccccccccC--chhHHHHH
Q 044823 349 WAPQVMILSHPAVGGFLTHCG--WNSSLEGI 377 (497)
Q Consensus 349 ~~pq~~lL~~~~~~~~ItHgG--~gs~~eal 377 (497)
+.=.......|+++.++.|+| ..=..|++
T Consensus 181 ~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~ 211 (293)
T COG2159 181 LYLDDVARKFPELKIVLGHMGEDYPWELEAI 211 (293)
T ss_pred hHHHHHHHHCCCCcEEEEecCCCCchhHHHH
Confidence 233455677899999999999 55555553
No 276
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=40.26 E-value=2.4e+02 Score=24.94 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=44.3
Q ss_pred cE-EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC---cchhhhHHHHHHhhhcCCCeEEEEec
Q 044823 8 FH-FILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP---VNAARFKTVLARALQCRLQIRLIEIQ 70 (497)
Q Consensus 8 ~~-vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~i~ 70 (497)
.| |+|+..+..-|-.-+..+++.|++.|..|.+++-. .+.+.++...+... .+.+-+++.+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~ 173 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVP 173 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeC
Confidence 35 88888888888777889999999999998888543 45555665555542 22346777765
No 277
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=40.17 E-value=2.7e+02 Score=27.34 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCC-eEEEEeC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGA-TATIVTT 43 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh-~Vt~~~~ 43 (497)
+..||+++-.++.| -.+|+.|++.|+ +++++=.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 45689999998877 678999999998 6776633
No 278
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=40.08 E-value=50 Score=31.54 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=32.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
|||+++-=|+-|-..-.+.||.+|+++|+.|.++
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5699999999999999999999999999999988
No 279
>PLN02939 transferase, transferring glycosyl groups
Probab=39.64 E-value=48 Score=37.08 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCC-----cCCH-HHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 5 TSNFHFILLPFLA-----QGHL-IPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 5 ~~~~~vl~~~~p~-----~GHv-~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
.++|||++++.-. .|-+ .-.-.|.++|++.||+|.+++|..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3579999987432 2222 234578999999999999999864
No 280
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=39.27 E-value=57 Score=32.24 Aligned_cols=85 Identities=22% Similarity=0.204 Sum_probs=0.0
Q ss_pred CcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhch-----hhHHHHhcCCCeeeecccch---HhhhccCCc
Q 044823 290 SICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVE-----ENFEERIKGRGLLIRGWAPQ---VMILSHPAV 361 (497)
Q Consensus 290 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp-----~~~~~~~~~~nv~v~~~~pq---~~lL~~~~~ 361 (497)
|........+..++++++..+.++..-+..+.....+..| +. .+-..+.+.=.+.+.+|+|| +.+|-.|++
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~-~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~ 266 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAW-LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF 266 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHH-hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc
Q ss_pred cccccccCch------hHHHHHHhCCcEe
Q 044823 362 GGFLTHCGWN------SSLEGISAGVQML 384 (497)
Q Consensus 362 ~~~ItHgG~g------s~~eal~~GvP~l 384 (497)
| |...|..+|+|+|
T Consensus 267 ---------NfVRGEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 267 ---------NFVRGEDSFVRAQWAGKPFV 286 (374)
T ss_pred ---------ceEecchHHHHHHHhCCCce
No 281
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=39.05 E-value=57 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.6
Q ss_pred CcEEEEecCC--CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 7 NFHFILLPFL--AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~~p--~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.+|++.++.. +.|-..-...||..|+++|++|.++=..
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3565555544 6788889999999999999999988443
No 282
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=38.57 E-value=3.3e+02 Score=25.38 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=33.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNA 47 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (497)
.-+++.-.|+.|-..-.++++...+.+|..|.+++.+...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 3466777779999999999999998899999999987533
No 283
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=38.52 E-value=46 Score=29.07 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=29.4
Q ss_pred EEEEecCCCcCCHHH-HHHHHHHHHh-CCCeEEEEeCCcchh
Q 044823 9 HFILLPFLAQGHLIP-MFDIARLLAQ-HGATATIVTTPVNAA 48 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P-~l~LA~~L~~-rGh~Vt~~~~~~~~~ 48 (497)
||+..-.++ ||... .+.+.+.|++ +||+|.++.++....
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 355555555 78766 8899999985 599999999886554
No 284
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=38.42 E-value=40 Score=32.23 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=25.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
|||+++-.+..| ..+|..|+++||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 478888877776 5678889999999999986
No 285
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.32 E-value=51 Score=30.92 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=31.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
|.|+++.=++-|...-...||..|+++|+.|.++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5688888889999999999999999999999988
No 286
>PRK00784 cobyric acid synthase; Provisional
Probab=38.20 E-value=2.7e+02 Score=28.93 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=29.6
Q ss_pred EEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 9 HFILLPFL-AQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 9 ~vl~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
++++.... .-|-..-...|++.|+++|++|..+-+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 46666554 589999999999999999999998866
No 287
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=37.69 E-value=15 Score=36.34 Aligned_cols=116 Identities=10% Similarity=0.169 Sum_probs=62.7
Q ss_pred CCCeeee-cccchHhhhccCCccccccccCchhHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccccccc
Q 044823 341 GRGLLIR-GWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGE 419 (497)
Q Consensus 341 ~~nv~v~-~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~ 419 (497)
.++++.. +..+-.++|..+++ +||--. ..+.|.++.++|++....-.|.... .. |...+... ...|
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~------~r--g~~~~~~~-~~pg- 317 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEK------ER--GFYFDYEE-DLPG- 317 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TS--SBSS-TTT-SSSS-
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhh------cc--CCCCchHh-hCCC-
Confidence 4566643 44567889999999 999974 5788999999999977654444421 22 22332210 0000
Q ss_pred ccccccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 044823 420 EEKIGVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFH 478 (497)
Q Consensus 420 ~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 478 (497)
+ .--+.++|.++|..++++++ .++++-+++.+.+-. ..+| .+...+.++|
T Consensus 318 -~---~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~-~~Dg-~s~eri~~~I 367 (369)
T PF04464_consen 318 -P---IVYNFEELIEAIENIIENPD---EYKEKREKFRDKFFK-YNDG-NSSERIVNYI 367 (369)
T ss_dssp -----EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHST-T--S--HHHHHHHHH
T ss_pred -c---eeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCC-CCCc-hHHHHHHHHH
Confidence 0 13477999999999887642 445555666666543 1334 4444444444
No 288
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=37.59 E-value=26 Score=32.53 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 044823 24 MFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
.-.|+++|+++||+|++++|..
T Consensus 22 ~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHhcCCeEEEEEccc
Confidence 4578999999999999999764
No 289
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=37.54 E-value=2.9e+02 Score=24.45 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=36.6
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc-chhhhHHHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPV-NAARFKTVL 54 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~-~~~~~~~~~ 54 (497)
-+.++-.|+.|-..-.+.++..+...|..|.|+.++. ...++.+..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~ 60 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIA 60 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHH
Confidence 3566667799999999999999999999999999985 444555543
No 290
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.42 E-value=59 Score=32.71 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=36.3
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARF 50 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (497)
.+++||++..+++. ...=...|.+.|.++|++|.++.++.....+
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 46789999988876 4557789999999999999999988655433
No 291
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=37.41 E-value=51 Score=30.13 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 20 HLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 20 Hv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
|+..|-..|++|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67889999999999999999998773
No 292
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=37.31 E-value=62 Score=20.99 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 044823 428 KKEDVETAINILMDDGEERDGRRRRAKEFG 457 (497)
Q Consensus 428 ~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 457 (497)
++++|.+||..+.++. .++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHC
Confidence 4788999999998652 37777777653
No 293
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=37.30 E-value=3.8e+02 Score=30.44 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEe
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFH 146 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~ 146 (497)
++.+.+++ .+||++|.... ...+|+++|||++...
T Consensus 380 el~~~i~~--~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMRE--KMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHh--cCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 45566777 79999998643 4668999999999755
No 294
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=37.28 E-value=77 Score=27.43 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=19.9
Q ss_pred cccccCc------hhHHHHHHhCCcEeccCC
Q 044823 364 FLTHCGW------NSSLEGISAGVQMLTWPL 388 (497)
Q Consensus 364 ~ItHgG~------gs~~eal~~GvP~l~~P~ 388 (497)
+++|.|- +++.+|...++|+|++.-
T Consensus 68 ~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 68 VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 8888874 478899999999999874
No 295
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=37.17 E-value=4.2e+02 Score=26.09 Aligned_cols=305 Identities=16% Similarity=0.090 Sum_probs=147.4
Q ss_pred HHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCcc-hHHHHHHcCCCeEEEechhHHHHHHHHHhhhhcccCCCCCCC
Q 044823 94 AYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIPW-TVDTAAKFNVPRIIFHGFSCFCLLCLDILRVSKVHENVSSDS 172 (497)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~-a~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
+..+..+...|.-.++++++ ..||+.|-...... -..+++..++|.+.+..-|.+..-.......
T Consensus 129 fTllgQaigsmIl~~Eai~r---~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q----------- 194 (465)
T KOG1387|consen 129 FTLLGQAIGSMILAFEAIIR---FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ----------- 194 (465)
T ss_pred eehHHHHHHHHHHHHHHHHh---CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh-----------
Confidence 44555566677778888887 49999886654443 3456667789999986666554432211111
Q ss_pred ccccCCCCCCCcccccccCCCCCCC--chHHHHHHHHHHhc-ccccEEEecchhhhhHHHHHHHHhhcCC-ceEEeC-cC
Q 044823 173 EYFKVPGFPHHIEFTKVQLPISPPT--DELKEFNEKILAAD-KKTYGVIINTFEELESASVKEYKNAKQG-KVWCIG-PV 247 (497)
Q Consensus 173 ~~~~~P~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~s~~~l~~~~~~~~~~~~~~-~~~~vG-p~ 247 (497)
++...++.. -.+.+++..++... ..++-+++|+.+.-. . ...-|.. ...-|= |+
T Consensus 195 ----------------rq~s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~n--H---I~qiW~~~~~~iVyPPC 253 (465)
T KOG1387|consen 195 ----------------RQKSGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNN--H---IKQIWQSNTCSIVYPPC 253 (465)
T ss_pred ----------------hhhcchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHH--H---HHHHhhccceeEEcCCC
Confidence 111111111 12455666666655 344557788866322 1 1112221 111122 22
Q ss_pred cCCCccchhhhhcCCCCCCChhhhhhhhccCCCCeEEEEeeCCcccC-CHhhHH--HHHHHHH---hC--CCCeEEE--E
Q 044823 248 SLCNKESLDKVERGNKAAIDIPECLTWLDSQQPSSVVYVCLGSICNL-TSSQLI--ELGLGLE---AS--KKPFIWV--S 317 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~-~~~~~~--~~~~al~---~~--~~~~i~~--~ 317 (497)
..+++.+-....+.+-...+++|-.-.- +...++ ++....+ +. +.+.+.+ +
T Consensus 254 -------------------~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGSc 314 (465)
T KOG1387|consen 254 -------------------STEDLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSC 314 (465)
T ss_pred -------------------CHHHHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEecc
Confidence 1234444333322333566666644321 111111 2211111 11 2222222 2
Q ss_pred eCCCchhhhhhhhchhhHHHHhc-CCCeeeecccchHh---hhccCCccccccccCch-----hHHHHHHhCCcEeccCC
Q 044823 318 RVGNKLEELEKWLVEENFEERIK-GRGLLIRGWAPQVM---ILSHPAVGGFLTHCGWN-----SSLEGISAGVQMLTWPL 388 (497)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~---lL~~~~~~~~ItHgG~g-----s~~eal~~GvP~l~~P~ 388 (497)
+...++..++. | .+..+.++ ++++.+..-+|... +|..+.. =-|+=|| |+.|.+++|.=+|+---
T Consensus 315 RneeD~ervk~--L-kd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i---Gvh~MwNEHFGIsVVEyMAAGlIpi~h~S 388 (465)
T KOG1387|consen 315 RNEEDEERVKS--L-KDLAEELKIPKHVQFEKNVPYEKLVELLGKATI---GVHTMWNEHFGISVVEYMAAGLIPIVHNS 388 (465)
T ss_pred CChhhHHHHHH--H-HHHHHhcCCccceEEEecCCHHHHHHHhcccee---ehhhhhhhhcchhHHHHHhcCceEEEeCC
Confidence 22222222222 1 12333333 66788777788755 4554444 2233333 78888888865444322
Q ss_pred cccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHhhC
Q 044823 389 FTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMD-DGEERDGRRRRAKEFGELAKRALEEG 467 (497)
Q Consensus 389 ~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~~~~a~~~~~~~~~~~~~~ 467 (497)
.+--.+.-.- . .|...... ..|.++-.+++.+++. |.++...+|++|++=-+++-+.
T Consensus 389 gGP~lDIV~~---~--~G~~tGFl-------------a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~---- 446 (465)
T KOG1387|consen 389 GGPLLDIVTP---W--DGETTGFL-------------APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL---- 446 (465)
T ss_pred CCCceeeeec---c--CCccceee-------------cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH----
Confidence 2211111110 0 12222222 3466777888888765 4555778888888877777654
Q ss_pred CChHHHHHHHHHHH
Q 044823 468 GSSYNNIKFFHPRY 481 (497)
Q Consensus 468 g~~~~~~~~~~~~~ 481 (497)
.-+++....+.++
T Consensus 447 -~F~kd~~~~i~kl 459 (465)
T KOG1387|consen 447 -KFDKDWENPICKL 459 (465)
T ss_pred -HHHHhHhHHHHHh
Confidence 3445555555554
No 296
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=37.13 E-value=30 Score=35.49 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=45.3
Q ss_pred hHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHHH
Q 044823 372 SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRRR 451 (497)
Q Consensus 372 s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~ 451 (497)
++.||+++|+|+++. ++..-+..+ +..--|...+.. .-....+.+++.++.+|++....+.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp~-------------~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDPG-------------QEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCCc-------------hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 789999999999986 444445555 355566766554 23445799999999999955555544
Q ss_pred HHHH
Q 044823 452 RAKE 455 (497)
Q Consensus 452 ~a~~ 455 (497)
+-.+
T Consensus 443 ~G~~ 446 (495)
T KOG0853|consen 443 NGLK 446 (495)
T ss_pred HHHH
Confidence 4433
No 297
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=37.11 E-value=36 Score=29.81 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=30.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
||++...++.| ..-...|.+.|.++|++|.++.++....
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 67777777654 4456699999999999999999885443
No 298
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.08 E-value=89 Score=28.34 Aligned_cols=49 Identities=6% Similarity=-0.040 Sum_probs=37.4
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHHHHHH
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQH-GATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
--+++.-.|+.|-..-.++++..-+++ |..|.+++.+.....+.+...+
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s 69 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKS 69 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHT
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHH
Confidence 357777788999999999988877777 9999999998887777666554
No 299
>PRK07004 replicative DNA helicase; Provisional
Probab=37.05 E-value=3.9e+02 Score=27.53 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=35.4
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQ-HGATATIVTTPVNAARFK 51 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~~~~~~~~ 51 (497)
=+++..-|+.|-..-.+.+|..++. .|+.|.|++.+.....+.
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 3677788899999999999998874 699999999987665543
No 300
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=36.84 E-value=3.6e+02 Score=27.62 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=28.3
Q ss_pred EEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 10 FILLPFL-AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 10 vl~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|++.... .-|-..-...|++.|+++|++|..+-+.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g 37 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG 37 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC
Confidence 4555444 4788999999999999999999999653
No 301
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.98 E-value=43 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=25.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
|||+++-.++.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 578888887776 4578889999999999976
No 302
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=35.94 E-value=52 Score=32.99 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=35.1
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARF 50 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~ 50 (497)
+.+||++..+++.|= .-.+.|.+.|.++|++|.++.++.....+
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 457898888887555 55899999999999999999988654433
No 303
>PRK14098 glycogen synthase; Provisional
Probab=35.90 E-value=61 Score=33.67 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCcEEEEecC--------CCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPF--------LAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~--------p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
++|||++++. ++.|++ .-.|.++|+++||+|.++.|-
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCC
Confidence 4589999874 444554 567889999999999999885
No 304
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=35.74 E-value=1.3e+02 Score=29.90 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=22.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
|||.++-.+--| +..|-.|++.||+|+++
T Consensus 1 MkI~viGtGYVG-----Lv~g~~lA~~GHeVv~v 29 (414)
T COG1004 1 MKITVIGTGYVG-----LVTGACLAELGHEVVCV 29 (414)
T ss_pred CceEEECCchHH-----HHHHHHHHHcCCeEEEE
Confidence 567777666555 45677899999999998
No 305
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=35.70 E-value=97 Score=25.98 Aligned_cols=39 Identities=26% Similarity=0.188 Sum_probs=30.5
Q ss_pred CCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeC
Q 044823 280 PSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRV 319 (497)
Q Consensus 280 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 319 (497)
.+.+|++++||......+.++++++.+. .+.++++....
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3458999999999878888899988874 35788776544
No 306
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=35.15 E-value=74 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCeEEEECCCC-cchHHHHHHcCCCeEEEechhH
Q 044823 106 LPFENLFREQTPQPCCIISDMCI-PWTVDTAAKFNVPRIIFHGFSC 150 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~-~~a~~~A~~lgIP~i~~~~~~~ 150 (497)
..+.+++++...+..++|..++- ++|..+|+++|+|.|.+.|...
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 35566666622223477777655 6888899999999988766543
No 307
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.04 E-value=62 Score=30.31 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=30.8
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
|+|+++-=++-|-..-.+.||.+|+++|++|.++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 5688887789999999999999999999999988
No 308
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=35.04 E-value=54 Score=31.61 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=32.6
Q ss_pred cEEEEecC-CCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 8 FHFILLPF-LAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 8 ~~vl~~~~-p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
||++|+.. |+-|-..-..++|-.++++|++|.++++...++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 35565555 589999999999999999999999999876654
No 309
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=34.80 E-value=1.5e+02 Score=31.40 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=20.7
Q ss_pred ccccccCc------hhHHHHHHhCCcEeccC
Q 044823 363 GFLTHCGW------NSSLEGISAGVQMLTWP 387 (497)
Q Consensus 363 ~~ItHgG~------gs~~eal~~GvP~l~~P 387 (497)
++++|.|- +++.+|...++|||++.
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 37878774 47889999999999995
No 310
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.65 E-value=3.2e+02 Score=28.74 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHH-HHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccc--cCC--CCCCCC---CCCCC
Q 044823 18 QGHLIPMFDIARL-LAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQE--AGL--PEGCEN---FDMLP 89 (497)
Q Consensus 18 ~GHv~P~l~LA~~-L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~--~~~--~~~~~~---~~~~~ 89 (497)
.|++.=-+.+|+. +.+.|++|.+.-.. +.+.+++.+ .+.++.++...++ ..+ ...+.. ....+
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~~--------~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~ 106 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSRL--------SLPVIVIKPTGFDVMQALARARRIASSIGVVTHQ 106 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHhC--------CCCEEEecCChhhHHHHHHHHHhcCCcEEEEecC
Confidence 4777778888844 66668888776433 444454442 4666666544332 000 000000 00000
Q ss_pred c-hhHHHHHHHHH------------HhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEech
Q 044823 90 S-IDLAYNFLTSL------------QKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 90 ~-~~~~~~~~~~~------------~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~ 148 (497)
. ......+...+ +.....+.++. . ..+++||.|. -+..+|+++|++.+.+.+.
T Consensus 107 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~-~--~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 107 DTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLR-A--RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHH-H--CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 0 11122222222 12222333333 3 5899999995 3578999999999998765
No 311
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=34.64 E-value=1.6e+02 Score=31.35 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=21.3
Q ss_pred cccccccCc------hhHHHHHHhCCcEeccC
Q 044823 362 GGFLTHCGW------NSSLEGISAGVQMLTWP 387 (497)
Q Consensus 362 ~~~ItHgG~------gs~~eal~~GvP~l~~P 387 (497)
+++++|.|- +++.+|.+.++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 338888774 48899999999999984
No 312
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=34.50 E-value=66 Score=30.61 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=50.1
Q ss_pred CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhH
Q 044823 294 LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSS 373 (497)
Q Consensus 294 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~ 373 (497)
.+.+..+.+.+|+.+...+.||...++.... .+.++++...+-++|.. ||=+.-..++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~--------------------rlL~~ld~~~~~~~pK~--~iGySDiTaL 103 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGAN--------------------RLLPYLDYDLIRANPKI--FVGYSDITAL 103 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH--------------------HhhhhCCHHHHhhCCeE--EEEecHHHHH
Confidence 4567788899999999999999998875422 22345555555556655 6666666666
Q ss_pred HHHHHh--CCcEeccCCcc
Q 044823 374 LEGISA--GVQMLTWPLFT 390 (497)
Q Consensus 374 ~eal~~--GvP~l~~P~~~ 390 (497)
+-+++. |++.+-=|+..
T Consensus 104 ~~~l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 104 HLALYAKTGLVTFHGPMLA 122 (282)
T ss_pred HHHHHHhcCceEEECcccc
Confidence 666643 66666666543
No 313
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=34.43 E-value=1.6e+02 Score=24.32 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCe--EEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGAT--ATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFP 72 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~--Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ 72 (497)
+.||+++.--|+-.-++-++ ++|...|.+ |.++-+..+...+++. ||+...++++
T Consensus 15 ~~MrFLIThnPtnaTln~fi---eELkKygvttvVRVCe~TYdt~~lek~---------GI~Vldw~f~ 71 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKFI---EELKKYGVTTVVRVCEPTYDTTPLEKE---------GITVLDWPFD 71 (173)
T ss_pred cceEEEEecCCCchhHHHHH---HHHHhcCCeEEEEecccccCCchhhhc---------CceEeecccc
Confidence 46999999999988888654 799999988 3444333333333333 7888887653
No 314
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.01 E-value=2.2e+02 Score=28.40 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=34.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAAR 49 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~ 49 (497)
--|.|+-.-+.|-..-+-.||..+.++|+.|.+++.....+-
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 345556666899999999999999999999999998865543
No 315
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=33.59 E-value=2.4e+02 Score=22.35 Aligned_cols=87 Identities=18% Similarity=0.071 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHHHH
Q 044823 20 HLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFLT 99 (497)
Q Consensus 20 Hv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (497)
+-.-++.+|+.|.+.|++| ++++.+...+++. ++....+. ...+ .. . . +
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~---------gi~~~~v~------~~~~-~~-~--~---~------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLEN---------GIPVTPVA------WPSE-EP-Q--N---D------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHc---------CCCceEee------eccC-CC-C--C---C-------
Confidence 4566889999999999888 3556555444433 44333321 0000 00 0 0 0
Q ss_pred HHHhchHHHHHHHhhcCCCCeEEEECCC---------CcchHHHHHHcCCCeEE
Q 044823 100 SLQKLQLPFENLFREQTPQPCCIISDMC---------IPWTVDTAAKFNVPRII 144 (497)
Q Consensus 100 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~---------~~~a~~~A~~lgIP~i~ 144 (497)
...+.+++++ .++|+||.-+. .+.....|-.+|||++.
T Consensus 60 -----~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -----KPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -----chhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1345666777 89999998432 23455678899999974
No 316
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=32.83 E-value=2.6e+02 Score=22.56 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=32.5
Q ss_pred hhhhhhhhccCCCCeEEEEeeCCcccC-CHhhHHHHHHHHHhCCCCeEEE
Q 044823 268 IPECLTWLDSQQPSSVVYVCLGSICNL-TSSQLIELGLGLEASKKPFIWV 316 (497)
Q Consensus 268 ~~~~~~~l~~~~~~~vv~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~ 316 (497)
.++..+|+..++ +++|-|-.... +++.+..+++.+.+.+...+..
T Consensus 33 ~~d~~~~l~~gE----lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i 78 (123)
T PF07905_consen 33 APDPSDWLRGGE----LVLTTGYALRDDDEEELREFIRELAEKGAAGLGI 78 (123)
T ss_pred cCCHHHhCCCCe----EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 345677987654 67777776665 5667888999999888866554
No 317
>PRK06988 putative formyltransferase; Provisional
Probab=32.82 E-value=3.7e+02 Score=25.98 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=24.0
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 37999996665 3456667788889998877654
No 318
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.66 E-value=1.1e+02 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.+|||.|+-.+..|. .+|+.|+++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 468999998888774 7899999999999988654
No 319
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=32.51 E-value=1.2e+02 Score=25.98 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred hhhhhhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhH-HHHhcCCCeeeec
Q 044823 270 ECLTWLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENF-EERIKGRGLLIRG 348 (497)
Q Consensus 270 ~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~-~~~~~~~nv~v~~ 348 (497)
++-++|.++. ...++-|... ......++..+.+-+++-+ +|..+ ............+
T Consensus 22 ~lg~~La~~g---~~lv~Gg~~G-----lM~a~a~ga~~~gg~viGV--------------lp~~l~~~~~~~~~~i~~~ 79 (159)
T TIGR00725 22 RLGKELAKKG---HILINGGRTG-----VMEAVSKGAREAGGLVVGI--------------LPDEDFAGNPYLTIKVKTG 79 (159)
T ss_pred HHHHHHHHCC---CEEEcCCchh-----HHHHHHHHHHHCCCeEEEE--------------CChhhccCCCCceEEEECC
Q ss_pred c-cchHhhhccCCccccccccCchhHHHH---HHhCCcEeccCCcc
Q 044823 349 W-APQVMILSHPAVGGFLTHCGWNSSLEG---ISAGVQMLTWPLFT 390 (497)
Q Consensus 349 ~-~pq~~lL~~~~~~~~ItHgG~gs~~ea---l~~GvP~l~~P~~~ 390 (497)
+ .+-+.++...+-.+++-=||.||+.|. +.+++|+++++..+
T Consensus 80 ~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 80 MNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred CcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCC
No 320
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=32.50 E-value=5.8e+02 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.8
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 17 AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 17 ~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.-|-..-...|++.|+++|.+|..+-+.
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4688888999999999999999999774
No 321
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=32.39 E-value=82 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=33.1
Q ss_pred EEEEecCC--CcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 044823 9 HFILLPFL--AQGHLIPMFDIARLLAQHGATATIVTTPVN 46 (497)
Q Consensus 9 ~vl~~~~p--~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~ 46 (497)
+|.+++++ +-|-..-.-+|+.+|+.+|+.|.++-....
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 67788877 799999999999999999999999966543
No 322
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=32.28 E-value=1.8e+02 Score=25.68 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC-CCCCchhHHHHHHH
Q 044823 21 LIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF-DMLPSIDLAYNFLT 99 (497)
Q Consensus 21 v~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 99 (497)
=.-++.||+.|.+.|+++. ++..+...+++. ++....+.- --++|+-.... +.+.+ .....++.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~k---~TgfpE~l~GRVKTLHP-~ihggiL~ 74 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVSD---ITGFPEILGGRVKTLHP-KIHGGILA 74 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhhh---ccCCcHhhCCccccCCh-hhhhhhhc
Confidence 4557899999999999983 555455444444 565554420 12445443322 12221 22223322
Q ss_pred HHHhchHHHHHHHhhcCCCCeEEEECCC
Q 044823 100 SLQKLQLPFENLFREQTPQPCCIISDMC 127 (497)
Q Consensus 100 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~ 127 (497)
. ......+ ++-+.--..+|+||+..+
T Consensus 75 ~-~~~~~~~-~~~~~~i~~idlVvvNlY 100 (187)
T cd01421 75 R-RDNEEHK-DLEEHGIEPIDLVVVNLY 100 (187)
T ss_pred C-CCChhHH-HHHHcCCCCeeEEEEccc
Confidence 1 1122233 333322257899999843
No 323
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=32.27 E-value=97 Score=32.35 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=39.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHH
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLA 55 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (497)
--+++.-.|+.|-..-.+.++...+..|..|.+++.+...+.+.+...
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~ 321 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNAR 321 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHH
Confidence 456677777899999999999999999999999999877776665543
No 324
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.10 E-value=1.7e+02 Score=24.04 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=38.3
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHH
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVL 54 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~ 54 (497)
+|++-+..+.+|-.----++..|..+|++|.-.......+.+.+..
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa 46 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAA 46 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 4788899999999999999999999999999987766555555544
No 325
>PRK08322 acetolactate synthase; Reviewed
Probab=31.91 E-value=1.8e+02 Score=30.61 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=21.6
Q ss_pred ccccccccCc------hhHHHHHHhCCcEeccC
Q 044823 361 VGGFLTHCGW------NSSLEGISAGVQMLTWP 387 (497)
Q Consensus 361 ~~~~ItHgG~------gs~~eal~~GvP~l~~P 387 (497)
.+++++|.|- +++.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3348888774 48889999999999985
No 326
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.79 E-value=63 Score=29.12 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=30.9
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
=|++.-.|+.|-....-.||++|.+++|+|...+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 466777789999999999999999999999877643
No 327
>PRK07206 hypothetical protein; Provisional
Probab=31.66 E-value=1.6e+02 Score=29.60 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=24.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
++|+++-.... -..++++++++|+++.++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 46777776433 346899999999999888765
No 328
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.56 E-value=4.5e+02 Score=24.79 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCee-----eecccchHhhhccCCccccc-cccCchhHHH
Q 044823 302 LGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLL-----IRGWAPQVMILSHPAVGGFL-THCGWNSSLE 375 (497)
Q Consensus 302 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~-----v~~~~pq~~lL~~~~~~~~I-tHgG~gs~~e 375 (497)
+.+.++..|.+|+.+.+...... +-..+...+...-+. -.++=|+.+.|+.++. +| |--..|...|
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~~------~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sE 260 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPDT------VKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSE 260 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcHH------HHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHH
Confidence 45666677888888877653221 111111111111111 2255688899988887 55 4455788899
Q ss_pred HHHhCCcEecc
Q 044823 376 GISAGVQMLTW 386 (497)
Q Consensus 376 al~~GvP~l~~ 386 (497)
|+..|+|+.++
T Consensus 261 AasTgkPv~~~ 271 (329)
T COG3660 261 AASTGKPVFIL 271 (329)
T ss_pred HhccCCCeEEE
Confidence 99999997553
No 329
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.34 E-value=1e+02 Score=27.32 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=54.1
Q ss_pred hHHHHHHhCCcEeccCCcccc-hhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHHH
Q 044823 372 SSLEGISAGVQMLTWPLFTDQ-FCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGRR 450 (497)
Q Consensus 372 s~~eal~~GvP~l~~P~~~DQ-~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~ 450 (497)
|+.++++-+.=.+..|+..=+ |...-.+. .+--.-+...+++.+.|-|.-++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~-------------------------avi~gl~~~i~~~~liD~ekm~~~q 78 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVA-------------------------AVITGLYITILQKLLIDQEKMKELQ 78 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHH-------------------------HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666777777777777765544 33333332 1223345566777888888888999
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 044823 451 RRAKEFGELAKRALEEGGSSYNNIKFFHPR 480 (497)
Q Consensus 451 ~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 480 (497)
+.++++++++++|-++|.. ++++++=++
T Consensus 79 k~m~efq~e~~eA~~~~d~--~~lkkLq~~ 106 (201)
T COG1422 79 KMMKEFQKEFREAQESGDM--KKLKKLQEK 106 (201)
T ss_pred HHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 9999999999999666653 555544433
No 330
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=31.32 E-value=1.2e+02 Score=26.45 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccC
Q 044823 280 PSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHP 359 (497)
Q Consensus 280 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~ 359 (497)
.+.+-.+.+|.+. +.+++.++..|.+++..-...... + .+. ... ..+.+-.++|+.+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~--------~-~~~----~~~---~~~~~l~ell~~a 92 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKPE--------E-GAD----EFG---VEYVSLDELLAQA 92 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHHH--------H-HHH----HTT---EEESSHHHHHHH-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCChh--------h-hcc----ccc---ceeeehhhhcchh
Confidence 3458888998877 566667777888877665544211 0 010 111 2566788899999
Q ss_pred CccccccccCchhHHHHHHhCCcEeccCCc--ccchhhHHHHHHHHcceeE-eccccccccccccccccccCHHHHHHHH
Q 044823 360 AVGGFLTHCGWNSSLEGISAGVQMLTWPLF--TDQFCNEKLIVEVLRIGVS-VGVEVPMKFGEEEKIGVLVKKEDVETAI 436 (497)
Q Consensus 360 ~~~~~ItHgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~~~e~~G~G~~-l~~~~~~~~~~~~~~~~~~~~~~l~~ai 436 (497)
++ ++.|+ |.. ..+..|+..+. .++=|.. +... +++.+++++|.+++
T Consensus 93 Di--v~~~~------------------plt~~T~~li~~~~l~-~mk~ga~lvN~a----------RG~~vde~aL~~aL 141 (178)
T PF02826_consen 93 DI--VSLHL------------------PLTPETRGLINAEFLA-KMKPGAVLVNVA----------RGELVDEDALLDAL 141 (178)
T ss_dssp SE--EEE-S------------------SSSTTTTTSBSHHHHH-TSTTTEEEEESS----------SGGGB-HHHHHHHH
T ss_pred hh--hhhhh------------------ccccccceeeeeeeee-ccccceEEEecc----------chhhhhhhHHHHHH
Confidence 98 77775 443 35677899994 8887744 3433 13478888888887
Q ss_pred HH
Q 044823 437 NI 438 (497)
Q Consensus 437 ~~ 438 (497)
++
T Consensus 142 ~~ 143 (178)
T PF02826_consen 142 ES 143 (178)
T ss_dssp HT
T ss_pred hh
Confidence 64
No 331
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=31.23 E-value=69 Score=29.50 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=30.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCcchh
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQH--GATATIVTTPVNAA 48 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~r--Gh~Vt~~~~~~~~~ 48 (497)
||++--.++.+=+.=.+.|.+.|.++ ||+|.++.++....
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 35555555544447899999999999 99999999885443
No 332
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.22 E-value=69 Score=33.46 Aligned_cols=36 Identities=8% Similarity=0.255 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEe
Q 044823 106 LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFH 146 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~ 146 (497)
.++++.+++ .+||+||.++ +...+|+++|||++.++
T Consensus 364 ~ei~~~I~~--~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIAR--VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHh--cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 345566666 7899999986 45557899999998864
No 333
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=30.51 E-value=2.8e+02 Score=28.21 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred ccccccCch------hHHHHHHhCCcEecc
Q 044823 363 GFLTHCGWN------SSLEGISAGVQMLTW 386 (497)
Q Consensus 363 ~~ItHgG~g------s~~eal~~GvP~l~~ 386 (497)
++++|.|-| .+.+|.+.++|+|++
T Consensus 66 v~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 66 AVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred EEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 388888744 788999999999999
No 334
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=30.38 E-value=1.6e+02 Score=27.49 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=43.5
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
.--+++.-.|+.|...-.++++...+++|..|.+++.......+.+...+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARS 72 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHH
Confidence 45678888889999999999999999999999999999888877776644
No 335
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.36 E-value=81 Score=25.73 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=29.1
Q ss_pred EEEEecCC-CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 9 HFILLPFL-AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 9 ~vl~~~~p-~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
-++++-.| ..-.+...+-+...|..+|.+|++.+++
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCH
Confidence 34455555 5677788889999999999999999988
No 336
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=30.33 E-value=71 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+..+|+++-.+..| ...++.|.+.|++|+++.+.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45678888666544 78899999999999999644
No 337
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=30.20 E-value=1e+02 Score=24.79 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=33.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
||++..-++.|-......|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788889999999999999999999999999887654
No 338
>PRK09739 hypothetical protein; Provisional
Probab=30.16 E-value=1.2e+02 Score=26.89 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=22.1
Q ss_pred CCcEEEEecC-CCcCC-HH-HHHHHHHHHHhCCCeEEEEe
Q 044823 6 SNFHFILLPF-LAQGH-LI-PMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 6 ~~~~vl~~~~-p~~GH-v~-P~l~LA~~L~~rGh~Vt~~~ 42 (497)
++|||+++.. |-.+- -. -.-.+++.|.++||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4677777754 43322 22 23345666777899998774
No 339
>PRK06270 homoserine dehydrogenase; Provisional
Probab=30.13 E-value=3.6e+02 Score=26.44 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=37.3
Q ss_pred chHhhhccCCcccccc------ccC---chhHHHHHHhCCcEec---cCCcccchhhHHHHHHHHcceeEec
Q 044823 351 PQVMILSHPAVGGFLT------HCG---WNSSLEGISAGVQMLT---WPLFTDQFCNEKLIVEVLRIGVSVG 410 (497)
Q Consensus 351 pq~~lL~~~~~~~~It------HgG---~gs~~eal~~GvP~l~---~P~~~DQ~~na~~~~e~~G~G~~l~ 410 (497)
+..++|..+++.++|- |+| ..-+.+||.+|+++|+ -|+........+.. ++.|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEe
Confidence 4456675555444554 553 4456899999999999 47755444444444 5777776653
No 340
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=29.87 E-value=91 Score=27.93 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.++||.+=..|+-|-...||.=|+.|.++|.+|.+..-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 468999999999999999999999999999999988665
No 341
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=29.84 E-value=1.3e+02 Score=31.94 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=21.1
Q ss_pred cccccccCch------hHHHHHHhCCcEeccC
Q 044823 362 GGFLTHCGWN------SSLEGISAGVQMLTWP 387 (497)
Q Consensus 362 ~~~ItHgG~g------s~~eal~~GvP~l~~P 387 (497)
.++++|.|-| ++.+|...++|+|++.
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3378887744 8899999999999985
No 342
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=29.68 E-value=78 Score=27.93 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=21.7
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
|||.++ +.||+- +.+|..|+++||+|+.+-.
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~ 31 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDI 31 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeC
Confidence 567777 445543 7889999999999999843
No 343
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=29.55 E-value=5.7e+02 Score=25.37 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 106 LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
.++.+.+++ .+||++|.+. .....++++|+|++.+
T Consensus 338 ~~~~~~~~~--~~pdl~ig~~---~~~~~~~~~~ip~~~~ 372 (399)
T cd00316 338 EELEELIRE--LKPDLIIGGS---KGRYIAKKLGIPLVRI 372 (399)
T ss_pred HHHHHHHhh--cCCCEEEECC---cHHHHHHHhCCCEEEc
Confidence 355556676 7999999885 4567888899999864
No 344
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=29.47 E-value=94 Score=25.52 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhCCCeE-EEEeCC
Q 044823 20 HLIPMFDIARLLAQHGATA-TIVTTP 44 (497)
Q Consensus 20 Hv~P~l~LA~~L~~rGh~V-t~~~~~ 44 (497)
...-.+.+|+++.++||+| +++-..
T Consensus 16 ~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 16 QASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 3456788899999999994 666544
No 345
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=29.25 E-value=4.1e+02 Score=23.56 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCCCeEEE-ECCCC-cchHHHHHHcCCCeEEEech
Q 044823 116 TPQPCCII-SDMCI-PWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 116 ~~~~D~vI-~D~~~-~~a~~~A~~lgIP~i~~~~~ 148 (497)
...||+|| .|+.. ..+..=|.++|||.|.+.-+
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 36899875 66644 57788899999999997433
No 346
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.21 E-value=86 Score=27.33 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCcc--hHHHHHHcCCCeEEEe
Q 044823 106 LPFENLFREQTPQPCCIISDMCIPW--TVDTAAKFNVPRIIFH 146 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~~~--a~~~A~~lgIP~i~~~ 146 (497)
..++.+++ .+||+||....... ....-+..|||++.+.
T Consensus 60 ~n~E~ll~---l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA---LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc---cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 45666666 49999998654322 3344578899998863
No 347
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.20 E-value=1e+02 Score=25.12 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=28.4
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
++++.++..++-.-+..+++.|+++|+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35666676777888999999999999999988555
No 348
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.18 E-value=68 Score=32.54 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 106 LPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 106 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
.++.+.+++ .+||++|.... ...+|+++|||++.+
T Consensus 359 ~e~~~~i~~--~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 359 YELEEFVKR--LKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHH--hCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 355667777 79999998865 666899999999875
No 349
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.14 E-value=4.2e+02 Score=24.72 Aligned_cols=38 Identities=29% Similarity=0.219 Sum_probs=27.3
Q ss_pred ccchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHH
Q 044823 390 TDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAIN 437 (497)
Q Consensus 390 ~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 437 (497)
+.+.+|.+.+ |++++.+.+.++ +|.. .-+.+.+..|..
T Consensus 183 fs~~~n~all-~q~~id~vItK~----SG~~-----Gg~~~Ki~aA~e 220 (257)
T COG2099 183 FSEEDNKALL-EQYRIDVVVTKN----SGGA-----GGTYEKIEAARE 220 (257)
T ss_pred cChHHHHHHH-HHhCCCEEEEcc----CCcc-----cCcHHHHHHHHH
Confidence 5788899999 699999999876 2211 146777766654
No 350
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=29.13 E-value=60 Score=31.71 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=27.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|||+|+-.+..|. .+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecH
Confidence 6899998888774 5788999999999999753
No 351
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=29.06 E-value=1.2e+02 Score=27.08 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=30.6
Q ss_pred CCcEEEEecC--CCcCCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 044823 6 SNFHFILLPF--LAQGHLIPMFDIARLLAQ-HGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~--p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~ 44 (497)
+.+|++.++. ++.|-..-...||..|++ +|++|.++=..
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4466666654 588999999999999997 69999998443
No 352
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.98 E-value=98 Score=23.27 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=28.4
Q ss_pred cEEEEecCCCc--CCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 8 FHFILLPFLAQ--GHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 8 ~~vl~~~~p~~--GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
.+|+++|.... .+..-...+++.|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46888887653 4667789999999999999988543
No 353
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=28.89 E-value=1.8e+02 Score=25.72 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=47.3
Q ss_pred eccCCcccchhhHHHHHHHHcceeEecccccccccccc---ccccccCHHHHH----HHHHHHhcCChhhHHHHHHHHHH
Q 044823 384 LTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPMKFGEEE---KIGVLVKKEDVE----TAINILMDDGEERDGRRRRAKEF 456 (497)
Q Consensus 384 l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~---~~~~~~~~~~l~----~ai~~vl~~~~~~~~~~~~a~~~ 456 (497)
-++|...||...-..+-|..-+|+.=..-. ++++ +-...++.+.|+ +-|.++|.|+ .+-+|-+|+
T Consensus 21 WG~P~~dd~~LFE~L~Le~~QAGLSW~tIL----~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~----~IIRnr~KI 92 (187)
T PRK10353 21 WGVPETDSKKLFEMICLEGQQAGLSWITVL----KKRENYRACFHQFDPVKVAAMQEEDVERLVQDA----GIIRHRGKI 92 (187)
T ss_pred CCCcCCCcHHHHHHHHHHHhcccccHHHHH----HHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc----hhHHhHHHH
Confidence 346778888665555446777777642110 0000 001256666665 5678888887 666666666
Q ss_pred HHHHHHH------HhhCCChHHHHHHH
Q 044823 457 GELAKRA------LEEGGSSYNNIKFF 477 (497)
Q Consensus 457 ~~~~~~~------~~~~g~~~~~~~~~ 477 (497)
.+...+| .+++||-.+.+=.|
T Consensus 93 ~Avi~NA~~~l~i~~e~gSf~~ylW~f 119 (187)
T PRK10353 93 QAIIGNARAYLQMEQNGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHhhc
Confidence 6555544 12455544444333
No 354
>PRK04940 hypothetical protein; Provisional
Probab=28.87 E-value=1.2e+02 Score=26.67 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=25.8
Q ss_pred CCeEEEECCCC-cchHHHHHHcCCCeEEEech
Q 044823 118 QPCCIISDMCI-PWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 118 ~~D~vI~D~~~-~~a~~~A~~lgIP~i~~~~~ 148 (497)
+++++|..++- +||.-+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 56788887765 79999999999999997554
No 355
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.83 E-value=79 Score=26.40 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCeEEEEeCCc
Q 044823 26 DIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 26 ~LA~~L~~rGh~Vt~~~~~~ 45 (497)
-+|..|+++||+|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47899999999999999875
No 356
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=28.80 E-value=5.1e+02 Score=24.58 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=33.4
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHH
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTV 53 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (497)
.++|+++-.+..|. .+|+.|+++||.|.++....+.+..+..
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 57899999888886 4799999999999999887655544443
No 357
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=28.77 E-value=3.9e+02 Score=23.27 Aligned_cols=99 Identities=9% Similarity=0.041 Sum_probs=57.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE---eCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIV---TTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCEN 84 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 84 (497)
--|.+++..+.|-..-.+.+|-+.+.+|+.|.++ -........ ..++. .++.+..... ++. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~-~~l~~-----~~~~~~~~g~-----g~~----~ 70 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGER-AAFEP-----HGVEFQVMGT-----GFT----W 70 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChH-HHHHh-----cCcEEEECCC-----CCe----e
Confidence 4577888899999999999999999999999655 332111111 11111 1567766431 111 1
Q ss_pred CCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCC
Q 044823 85 FDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCI 128 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 128 (497)
... +. .. -...........++.+.+ .++|+||-|-..
T Consensus 71 ~~~-~~-~~---~~~~~~~~~~~a~~~l~~--~~~DlvVLDEi~ 107 (173)
T TIGR00708 71 ETQ-NR-EA---DTAIAKAAWQHAKEMLAD--PELDLVLLDELT 107 (173)
T ss_pred cCC-Cc-HH---HHHHHHHHHHHHHHHHhc--CCCCEEEehhhH
Confidence 110 11 10 111233344555666666 799999999654
No 358
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.74 E-value=2.9e+02 Score=24.79 Aligned_cols=39 Identities=26% Similarity=0.076 Sum_probs=25.5
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|.+ ++.++|++ .++.|++- ..|++.|.++||+|++++..
T Consensus 1 ~~~-~~~~~vlI--tGasg~iG--~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 1 MGS-LMGRVALV--TGAARGLG--RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCC-CCCCEEEE--eCCCchHH--HHHHHHHHHCCCeEEEEeCC
Confidence 533 34456665 34456654 57889999999999775544
No 359
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=28.64 E-value=2e+02 Score=29.86 Aligned_cols=160 Identities=15% Similarity=0.055 Sum_probs=89.0
Q ss_pred HhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccch---HhhhccCCcccccc-----c
Q 044823 296 SSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQ---VMILSHPAVGGFLT-----H 367 (497)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq---~~lL~~~~~~~~It-----H 367 (497)
-+.+...+.-+-..+.+++..-.++ + ..+.+ + -.+..+. +.++.+.-|.+. ..+.+-+++ ++- =
T Consensus 309 ~dl~~~~i~~~l~~~~~~vilG~gd--~-~le~~-~-~~la~~~-~~~~~~~i~~~~~la~~i~agaD~--~lmPSrfEP 380 (487)
T COG0297 309 LDLLLEAIDELLEQGWQLVLLGTGD--P-ELEEA-L-RALASRH-PGRVLVVIGYDEPLAHLIYAGADV--ILMPSRFEP 380 (487)
T ss_pred hhHHHHHHHHHHHhCceEEEEecCc--H-HHHHH-H-HHHHHhc-CceEEEEeeecHHHHHHHHhcCCE--EEeCCcCcC
Confidence 4445555555555565555443332 1 12211 1 0122222 335666666653 235555554 442 2
Q ss_pred cCchhHHHHHHhCCcEeccCCcc--cc----hhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhc
Q 044823 368 CGWNSSLEGISAGVQMLTWPLFT--DQ----FCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMD 441 (497)
Q Consensus 368 gG~gs~~eal~~GvP~l~~P~~~--DQ----~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 441 (497)
||. |=++|+.+|.+-|+.+..+ |- ..++ . +..|.|..... .+++++..++.+.+.
T Consensus 381 cGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~-~~~gtGf~f~~---------------~~~~~l~~al~rA~~ 441 (487)
T COG0297 381 CGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--I-QGVGTGFLFLQ---------------TNPDHLANALRRALV 441 (487)
T ss_pred CcH-HHHHHHHcCCcceEcccCCccceecCccchh--c-cCceeEEEEec---------------CCHHHHHHHHHHHHH
Confidence 554 5578999999888888754 33 2222 3 35666666643 499999999999874
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccCcc
Q 044823 442 DGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRYHATADLR 488 (497)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 488 (497)
-|+..-..++...+.++...-+-++.+.+.++-+.......
T Consensus 442 ------~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 442 ------LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred ------HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHHHhccc
Confidence 55555555666666665544455555666666555544433
No 360
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=28.62 E-value=90 Score=31.82 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
++++++++ .++|++|... ....+|+++|||++.+
T Consensus 364 ~l~~~i~~--~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACA--AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhh--cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 55666776 7899999885 4577999999999874
No 361
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.55 E-value=70 Score=22.78 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 044823 25 FDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 25 l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+..|..|+++|++|+++-..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56789999999999999544
No 362
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=28.55 E-value=1.1e+02 Score=25.34 Aligned_cols=34 Identities=24% Similarity=0.077 Sum_probs=29.2
Q ss_pred EEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 11 ILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 11 l~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.++.++..--+.|..-++...++.|++|+++.+-
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 4455677888999999999999999999999774
No 363
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=28.54 E-value=54 Score=28.86 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=23.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|||+++. +.|++- -.|+++...|||+||-++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 4566654 444443 36789999999999998754
No 364
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.53 E-value=77 Score=32.10 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=25.8
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
.+||.|+-.+..| +.+|..|+++||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 4789888766665 5789999999999998854
No 365
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.52 E-value=1.4e+02 Score=25.38 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=40.6
Q ss_pred CcEEEEecCC-------CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEE
Q 044823 7 NFHFILLPFL-------AQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIE 68 (497)
Q Consensus 7 ~~~vl~~~~p-------~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (497)
.+|++++-.| +..|+.-++.=|.+|++.|.+..++.+-.+.=..+....... ....+.|..
T Consensus 43 GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g-~~~~V~f~a 110 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLG-ANDHVKFVA 110 (171)
T ss_pred CceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcC-ccceEEEEe
Confidence 3566665444 678999999999999999999888876544333333333322 223567765
No 366
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.02 E-value=62 Score=27.73 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=23.7
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
+++|.|+-.+..| ..+|+.|.++||+|+++-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 4678888888777 478999999999999874
No 367
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=27.98 E-value=1.1e+02 Score=29.20 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
.+|.|+.=++-|-..-...||..|+++|++|.++
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 4666666778999999999999999999999999
No 368
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=27.92 E-value=1.1e+02 Score=29.78 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=30.3
Q ss_pred HhchHHHHHHHhhcCCCCeEEEECCCCcc-------h---HHHHHHcCCCeEEE
Q 044823 102 QKLQLPFENLFREQTPQPCCIISDMCIPW-------T---VDTAAKFNVPRIIF 145 (497)
Q Consensus 102 ~~~~~~l~~~l~~~~~~~D~vI~D~~~~~-------a---~~~A~~lgIP~i~~ 145 (497)
+.....+.+.++. .+||++|+-+.+-+ + ..+.+++|||.+.-
T Consensus 66 eea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 4455667777787 89999999985422 1 23567899999973
No 369
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.78 E-value=92 Score=31.70 Aligned_cols=35 Identities=9% Similarity=0.280 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEe
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFH 146 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~ 146 (497)
++.+.+++ .+||++|.+. ....+|+++|+|++.++
T Consensus 361 e~~~~i~~--~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 361 EVGDMIAR--TEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHh--hCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 34555666 7899999986 34557899999998864
No 370
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=27.67 E-value=1.4e+02 Score=26.21 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCeEEEECC--CCcchHHHHHHcCCCeEEE
Q 044823 107 PFENLFREQTPQPCCIISDM--CIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~i~~ 145 (497)
.+.+.+++ .++|.|++=. -...|..+|.++|+|++..
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 56666666 6899998433 4467888999999999985
No 371
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.52 E-value=1.7e+02 Score=31.05 Aligned_cols=24 Identities=4% Similarity=0.228 Sum_probs=20.4
Q ss_pred cccccCch------hHHHHHHhCCcEeccC
Q 044823 364 FLTHCGWN------SSLEGISAGVQMLTWP 387 (497)
Q Consensus 364 ~ItHgG~g------s~~eal~~GvP~l~~P 387 (497)
+++|.|-| ++.+|...++|+|++-
T Consensus 82 ~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 82 VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 88888754 7889999999999984
No 372
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=27.42 E-value=1e+02 Score=27.62 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=29.7
Q ss_pred cEEEEecCCCcCC--HHHHHHHHHHHHhC---CCeEEEEeCCcchhhhHH
Q 044823 8 FHFILLPFLAQGH--LIPMFDIARLLAQH---GATATIVTTPVNAARFKT 52 (497)
Q Consensus 8 ~~vl~~~~p~~GH--v~P~l~LA~~L~~r---Gh~Vt~~~~~~~~~~~~~ 52 (497)
|||++.-++-+|+ .||.-.+++.|..+ |++|....-|.......+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~~~~~v~~~~lPV~~~~~~~ 50 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELIGGAEVHTRELPVSYEKAFE 50 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEETTEEEEEEEE-SSHHHHHH
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcCCCceEEEEEecCchHhHHH
Confidence 6899888886665 79999999999864 677776655655444433
No 373
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=27.33 E-value=80 Score=30.62 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=29.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+++|.++-.+++| .+||+.|++.||+|++....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 3689999999998 58999999999999999865
No 374
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.15 E-value=91 Score=32.60 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 109 ENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 109 ~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
++++.. .++|++|.++ .+..+|+++|||++.+
T Consensus 430 ~~~l~~--~~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 430 RSLVFT--EPVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHhh--cCCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 334444 6899999885 4678899999999875
No 375
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=27.04 E-value=1.1e+02 Score=28.67 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=30.3
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
+|+|+.=|+-|-..-...||..|+++|++|.++
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 577777779999999999999999999999998
No 376
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=26.92 E-value=96 Score=32.51 Aligned_cols=35 Identities=14% Similarity=0.327 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEe
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFH 146 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~ 146 (497)
++.+.+++ .+||+||.++ ....+|+++|||++.++
T Consensus 353 el~~~i~~--~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAE--AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHh--cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 45556666 7899999875 46668999999998764
No 377
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=26.91 E-value=3.1e+02 Score=24.18 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEecCCCcCCHHHHHHHHHHHHhC
Q 044823 11 ILLPFLAQGHLIPMFDIARLLAQH 34 (497)
Q Consensus 11 l~~~~p~~GHv~P~l~LA~~L~~r 34 (497)
.++-.++-||..=|++|-+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 445567889999999999999776
No 378
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=26.81 E-value=98 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=24.0
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
|+++++-.+-.| ..||..|++.||+|++.+...
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCC
Confidence 455555554444 478999999999999997653
No 379
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=26.80 E-value=1.3e+02 Score=27.27 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=28.9
Q ss_pred CcEEEEecCCCcCC--HHHHHHHHHHHHhC---CCeEEEEeCCcc
Q 044823 7 NFHFILLPFLAQGH--LIPMFDIARLLAQH---GATATIVTTPVN 46 (497)
Q Consensus 7 ~~~vl~~~~p~~GH--v~P~l~LA~~L~~r---Gh~Vt~~~~~~~ 46 (497)
+|+||+.-+.-+|. .||...++++|... |++|....-|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~v~~~~LPV~ 45 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGEQAGALRVHSALLPVE 45 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccccCCCcEEEEEEeCCC
Confidence 47899888876665 89999999999774 455555444443
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.80 E-value=5.4e+02 Score=26.19 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=33.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHH-HhCCCeEEEEeCCcchhhh
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLL-AQHGATATIVTTPVNAARF 50 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L-~~rGh~Vt~~~~~~~~~~~ 50 (497)
.-++|+-.++.|-..=...||..+ ..+|+.|.+++........
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 346666666899999999999876 6789999999987544433
No 381
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=26.72 E-value=4.7e+02 Score=25.65 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCc-CCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCC
Q 044823 6 SNFHFILLPFLAQ-GHLIPMFDIARLLAQHG--ATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGC 82 (497)
Q Consensus 6 ~~~~vl~~~~p~~-GHv~P~l~LA~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 82 (497)
++|++...|..-. |. .-+-.|.+.+.+.| .+|.+++.+.....+.+.+.........+..+ + .+.
T Consensus 3 ~~~~~~~~p~~i~~G~-g~l~~l~~~l~~~~~~~~~livtd~~~~~~~~~~l~~~l~~~~~~~~~-~--------~~~-- 70 (350)
T PRK00843 3 EKSHWIQLPRDVVVGH-GVLDDIGDVCSDLKLTGRALIVTGPTTKKIAGDRVEENLEDAGDVEVV-I--------VDE-- 70 (350)
T ss_pred CCceEEeCCCeEEECC-CHHHHHHHHHHHhCCCCeEEEEECCcHHHHHHHHHHHHHHhcCCeeEE-e--------CCC--
Confidence 4667777766532 42 34567777787766 58888887755443333222211111122111 1 010
Q ss_pred CCCCCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECC---CCcchHHHHHHcCCCeEEEechh
Q 044823 83 ENFDMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDM---CIPWTVDTAAKFNVPRIIFHGFS 149 (497)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~---~~~~a~~~A~~lgIP~i~~~~~~ 149 (497)
+..+ ....+.+.+++ .+.|+||+=. ....+..+|...|+|+|.+-|+.
T Consensus 71 ------~t~~-----------~v~~~~~~~~~--~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 71 ------ATME-----------EVEKVEEKAKD--VNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred ------CCHH-----------HHHHHHHHhhc--cCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCc
Confidence 1111 11223333444 4789988432 22355667788899999986654
No 382
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=65 Score=33.08 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=25.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|||+++-.+--| |.-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEecc
Confidence 467777666444 78899999999999999654
No 383
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.66 E-value=99 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.2
Q ss_pred CCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 4 ETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 4 ~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
..+.++|+++-++..| ..+|+.|.+.||+|++.
T Consensus 25 ~l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 25 SLEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 3566889988887555 57899999999999954
No 384
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=26.66 E-value=97 Score=32.38 Aligned_cols=36 Identities=8% Similarity=0.232 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEec
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHG 147 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~ 147 (497)
++.+.+++ .+||+||.++ ....+|+++|||++.++.
T Consensus 355 ei~~~i~~--~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAA--LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHh--cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 45555666 7899999885 566789999999988643
No 385
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=26.41 E-value=4.2e+02 Score=25.96 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=52.8
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCcc
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVG 362 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~ 362 (497)
++.|.-+.+.+ ..+++.+.+.+.+++.+.+.... ..+| +- - ..+ ++...+-.
T Consensus 179 ~lqIgAr~~~N------~~LL~~va~~~kPViLk~G~~~t---i~E~-l~--A-----------~e~-----i~~~GN~~ 230 (335)
T PRK08673 179 ILQIGARNMQN------FDLLKEVGKTNKPVLLKRGMSAT---IEEW-LM--A-----------AEY-----ILAEGNPN 230 (335)
T ss_pred eEEECcccccC------HHHHHHHHcCCCcEEEeCCCCCC---HHHH-HH--H-----------HHH-----HHHcCCCe
Confidence 55555444442 23556667789999999876532 1222 10 0 011 22222223
Q ss_pred ccccccCchhH------------HHHH--HhCCcEeccCCcc-cc----hhhHHHHHHHHcc-eeEecc
Q 044823 363 GFLTHCGWNSS------------LEGI--SAGVQMLTWPLFT-DQ----FCNEKLIVEVLRI-GVSVGV 411 (497)
Q Consensus 363 ~~ItHgG~gs~------------~eal--~~GvP~l~~P~~~-DQ----~~na~~~~e~~G~-G~~l~~ 411 (497)
++++|+|..|. ...+ .++.|+++.|-+. .+ +..++..+ .+|+ |+.+..
T Consensus 231 viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~ 298 (335)
T PRK08673 231 VILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEV 298 (335)
T ss_pred EEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEe
Confidence 37888876322 1112 2479999988765 22 34555564 7777 455543
No 386
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=26.37 E-value=4.1e+02 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=29.7
Q ss_pred chHHHHHHHhhcCCCCeEEEECCCC---cchHHHHHHcCCCeEEE
Q 044823 104 LQLPFENLFREQTPQPCCIISDMCI---PWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 104 ~~~~l~~~l~~~~~~~D~vI~D~~~---~~a~~~A~~lgIP~i~~ 145 (497)
....+.++++. .+||+|+.-... ..+..+|.+||.|++.-
T Consensus 71 ~a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtd 113 (168)
T cd01715 71 YAPALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISD 113 (168)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceee
Confidence 34456666666 689999976643 36788999999999983
No 387
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=26.33 E-value=5.7e+02 Score=24.34 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECC
Q 044823 92 DLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDM 126 (497)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~ 126 (497)
+.-+.++.+--.....+.++++....+|.+.|+-+
T Consensus 76 ~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaS 110 (297)
T COG1090 76 KQKEEIRQSRINTTEKLVELIAASETKPKVLISAS 110 (297)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecc
Confidence 33444444444566777777775457898888764
No 388
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.19 E-value=1.1e+02 Score=28.12 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=24.9
Q ss_pred CCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 5 TSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 5 ~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
+..++|+++..-..==..-+-.....|+++||+|++++-
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 445666655433333334455666778999999998854
No 389
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.16 E-value=1e+02 Score=31.41 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 2 ASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 2 ~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.+-+ .+||+++-.+-.| +..|+.|+++|++|++.=..
T Consensus 3 ~~~~-~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 3 EDFQ-GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred cccc-CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCC
Confidence 3344 8899999999888 99999999999999999644
No 390
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=26.15 E-value=3.5e+02 Score=21.79 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=24.8
Q ss_pred eEEEEeeCCcccCCHhhHHHHHHHHHhC--CCCeEEE
Q 044823 282 SVVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWV 316 (497)
Q Consensus 282 ~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~ 316 (497)
.+|+++.||......+.+..+.+.+++. ...+-+.
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~a 39 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVG 39 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4899999997654567788888888753 3345555
No 391
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=26.10 E-value=1e+02 Score=29.80 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=45.6
Q ss_pred CCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCccccccccCchhH
Q 044823 294 LTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVGGFLTHCGWNSS 373 (497)
Q Consensus 294 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~ItHgG~gs~ 373 (497)
.+.+..+.+.+++.+...+.||...++.... .+.++++...+-++|.. ||=..-..++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~--------------------rlL~~lD~~~i~~~PK~--fiGySDiTaL 107 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDDSN--------------------ELLPYLDYELIKKNPKI--FIGYSDITAL 107 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccCHh--------------------hhhhhcCHHHHhhCCCE--EEeccHHHHH
Confidence 4567788899999999999999998875422 22344444444455544 5555555555
Q ss_pred HHHHH--hCCcEeccCCc
Q 044823 374 LEGIS--AGVQMLTWPLF 389 (497)
Q Consensus 374 ~eal~--~GvP~l~~P~~ 389 (497)
+-+++ .|.+.+-=|+.
T Consensus 108 ~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 108 HLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHHHHhcCCeEEECccc
Confidence 55553 25555555543
No 392
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.03 E-value=5.1e+02 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHH
Q 044823 430 EDVETAINILMD--DGEERDGRRRRAKEFGELAKRA 463 (497)
Q Consensus 430 ~~l~~ai~~vl~--~~~~~~~~~~~a~~~~~~~~~~ 463 (497)
..+.+.|.+.|. ||+..+.|++|++++.+.+...
T Consensus 105 ~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l 140 (264)
T cd01020 105 SKVANALADALVKADPDNKKYYQANAKKFVASLKPL 140 (264)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 345555555554 6888889999999999998754
No 393
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=25.99 E-value=1.4e+02 Score=28.61 Aligned_cols=28 Identities=14% Similarity=0.066 Sum_probs=22.0
Q ss_pred cCCccccccccCchhHHHHHHh----CCcEeccC
Q 044823 358 HPAVGGFLTHCGWNSSLEGISA----GVQMLTWP 387 (497)
Q Consensus 358 ~~~~~~~ItHgG~gs~~eal~~----GvP~l~~P 387 (497)
.+++ +|+-||=||+++++.. ++|++.+-
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 4566 9999999999999774 56766654
No 394
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=25.60 E-value=1.3e+02 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.018 Sum_probs=28.6
Q ss_pred CCcEEEEecCCCcC-C---HHHHHHHHHHHHhCCCeEEEEe
Q 044823 6 SNFHFILLPFLAQG-H---LIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 6 ~~~~vl~~~~p~~G-H---v~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
+++||+++..+..+ | +.....++++|.+.||+|.++-
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 47799999887433 2 4566789999999999998874
No 395
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=25.59 E-value=1.1e+02 Score=30.92 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=29.7
Q ss_pred CcEEEEecC--CCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 7 NFHFILLPF--LAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 7 ~~~vl~~~~--p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
+++|+.+.. |+.|-..-.+.||..|+.+|+.|.++
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 456555554 58999999999999999999999998
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=25.56 E-value=2.2e+02 Score=25.30 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=40.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEE
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIE 68 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (497)
-|+|+-..+-|-..-...||..++.+|..|.+++...+..-..+++..+... .++.+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~-l~vp~~~ 61 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEI-LGVPFYV 61 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHH-HTEEEEE
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHH-hccccch
Confidence 3556666689999999999999999999999999876644333433333222 1577665
No 397
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.55 E-value=1.8e+02 Score=26.46 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=59.9
Q ss_pred CcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh-hHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHH
Q 044823 17 AQGHLIPMFDIARLLAQHGATATIVTTPVNAAR-FKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAY 95 (497)
Q Consensus 17 ~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (497)
+..|+.-.+.+...++.+|=.+.|+.+...... ++....+. .++-+.-..++ |+-.+... .+.
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~--~gy~~~~~w~~------G~lTN~~~--------l~g 153 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA--GGYSHNRKWLG------GLLTNARE--------LFG 153 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh--cCceeeeeecc------ceeecchh--------hcc
Confidence 567888899999999999999999988654332 23332221 11111111111 22111100 000
Q ss_pred HHHHHHHhchHHHHHHHhhcCCCCeEEE-ECCCC-cchHHHHHHcCCCeEEEech
Q 044823 96 NFLTSLQKLQLPFENLFREQTPQPCCII-SDMCI-PWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~~~~~~D~vI-~D~~~-~~a~~~A~~lgIP~i~~~~~ 148 (497)
.+... .........++.. ..+|+|| .|... ..+..=|.+++||.|.+.=+
T Consensus 154 ~~~~~-~~~~pd~~~f~~t--~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDt 205 (251)
T KOG0832|consen 154 ALVRK-FLSLPDALCFLPT--LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDT 205 (251)
T ss_pred ccccc-ccCCCcceeeccc--CCcceeEecCcccccHHHHHHHHhCCCeEEEecC
Confidence 00000 0011122223333 5678765 56665 57888999999999997443
No 398
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=25.51 E-value=88 Score=30.79 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred CCCcCCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 044823 15 FLAQGHLIPMFDIARLLAQ-HGATATIVTTP 44 (497)
Q Consensus 15 ~p~~GHv~P~l~LA~~L~~-rGh~Vt~~~~~ 44 (497)
.-=+|++--..+||+.|++ +|++|++....
T Consensus 8 IDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 8 VDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred ecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 3458999999999999998 69999999865
No 399
>PRK12744 short chain dehydrogenase; Provisional
Probab=25.44 E-value=3.8e+02 Score=24.52 Aligned_cols=39 Identities=31% Similarity=0.183 Sum_probs=23.9
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
|+++.-+-|.++++..+.| ==..+|+.|+++|++|.++.
T Consensus 1 ~~~~~l~~k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCCCCCcEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 5543212245555554433 33568999999999976664
No 400
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.32 E-value=1.6e+02 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=28.1
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
+++...++.|-..-...||..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666688999999999999999999998875
No 401
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=25.17 E-value=1.9e+02 Score=21.92 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 044823 427 VKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEEGGSSYNNIKF 476 (497)
Q Consensus 427 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~ 476 (497)
-+.+++..-+..+++ +++.+++.+|.+-.+++++ +|-+...|.+
T Consensus 14 ~~~ee~~~f~~dL~T-~~E~~~l~~R~~va~~lL~-----~g~syreIa~ 57 (87)
T PF01371_consen 14 KDEEECYDFFEDLCT-PDELEALAQRWQVAKELLD-----EGKSYREIAE 57 (87)
T ss_dssp HCHHCHHHHHHHHSS-HHHHHHHHHHHHHHHHHHH-----TTSSHHHHHH
T ss_pred CCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH-----CCCCHHHHHH
Confidence 367778888888887 6777777777777776655 5555555543
No 402
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.93 E-value=3.5e+02 Score=28.81 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=21.9
Q ss_pred ccccccccCc------hhHHHHHHhCCcEeccC
Q 044823 361 VGGFLTHCGW------NSSLEGISAGVQMLTWP 387 (497)
Q Consensus 361 ~~~~ItHgG~------gs~~eal~~GvP~l~~P 387 (497)
.+++++|.|- +++.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3348888884 47889999999999996
No 403
>PRK03094 hypothetical protein; Provisional
Probab=24.91 E-value=67 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 044823 24 MFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+..+.+.|+++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999877554
No 404
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=24.85 E-value=7e+02 Score=24.82 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEE
Q 044823 107 PFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~ 145 (497)
++.+.+++ .+||++|.+.. ...+|+++++|++.+
T Consensus 332 ~~~~~l~~--~~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 332 EIEELLEE--LKPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp HHHHHHHH--HT-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred HHHHHHHh--cCCCEEEechh---hHHHHHHhCCCeEEE
Confidence 56667777 79999999843 777899999998874
No 405
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=24.77 E-value=94 Score=27.18 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+...++|+-.++.|-..=..++|+++..+|+.|.|+..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 456799999999999999999999999999999999876
No 406
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.63 E-value=1.1e+02 Score=26.69 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=20.8
Q ss_pred CCccccccccCchhHHHHHHhCCcEeccCCcc
Q 044823 359 PAVGGFLTHCGWNSSLEGISAGVQMLTWPLFT 390 (497)
Q Consensus 359 ~~~~~~ItHgG~gs~~eal~~GvP~l~~P~~~ 390 (497)
..+.++|++||-..+..... ++|+|-+|..+
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 44444999999988888877 99999999854
No 407
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=24.55 E-value=5e+02 Score=23.08 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=56.5
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC----cchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCC
Q 044823 10 FILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP----VNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENF 85 (497)
Q Consensus 10 vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 85 (497)
|.+++..+-|-....+-+|-+-.-+|..|.++..- .+.+.. .+.. .+.++.|+..+ .++...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~--~~~~---~~~~v~~~~~~---------~g~tw~ 96 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEA--ALEK---FGLGVEFHGMG---------EGFTWE 96 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHH--HHHh---hccceeEEecC---------CceeCC
Confidence 67788888999888888877777778888777332 111111 1111 12357776543 333222
Q ss_pred CCCCchhHHHHHHHHHHhchHHHHHHHhhcCCCCeEEEECCCCc
Q 044823 86 DMLPSIDLAYNFLTSLQKLQLPFENLFREQTPQPCCIISDMCIP 129 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 129 (497)
..... . .. .........-.+.+++ .++|+||.|-+++
T Consensus 97 ~~~~~-~---d~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 97 TQDRE-A---DI-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred CcCcH-H---HH-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 21111 1 11 2333444555666777 7999999997654
No 408
>PRK13236 nitrogenase reductase; Reviewed
Probab=24.27 E-value=1.5e+02 Score=28.28 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=28.2
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
.|.|.-=++-|-..-.+.||..|+++|++|.++
T Consensus 8 ~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 8 QIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 344444558999999999999999999999999
No 409
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=24.26 E-value=90 Score=28.53 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=24.1
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|+++++-.+-.| ..||+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 456666555544 67999999999999999543
No 410
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.21 E-value=1.2e+02 Score=28.55 Aligned_cols=38 Identities=5% Similarity=0.040 Sum_probs=24.1
Q ss_pred EEEEeeCCcccCC-HhhHHHHHHHHHh--CCCCeEEEEeCC
Q 044823 283 VVYVCLGSICNLT-SSQLIELGLGLEA--SKKPFIWVSRVG 320 (497)
Q Consensus 283 vv~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~ 320 (497)
+|+|||||...-. ...+..+.+.++. .+..+.|++.+.
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 7899999988754 3367777777775 377888997654
No 411
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.16 E-value=92 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcch
Q 044823 22 IPMFDIARLLAQHGATATIVTTPVNA 47 (497)
Q Consensus 22 ~P~l~LA~~L~~rGh~Vt~~~~~~~~ 47 (497)
+|.+.|++.|.++|.+|.+.=|-...
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccCh
Confidence 79999999999999999988665433
No 412
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=24.15 E-value=1.2e+02 Score=29.31 Aligned_cols=28 Identities=4% Similarity=0.253 Sum_probs=24.3
Q ss_pred cCCccccccccCchhHHHHHHhCCcEeccC
Q 044823 358 HPAVGGFLTHCGWNSSLEGISAGVQMLTWP 387 (497)
Q Consensus 358 ~~~~~~~ItHgG~gs~~eal~~GvP~l~~P 387 (497)
.|++ +|++++..+..-|-..|+|.+.+-
T Consensus 93 ~pDl--Vi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 93 NPDL--IISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred CCCE--EEECCchHHHHHHHhcCCCEEEEe
Confidence 4565 999999999999999999999654
No 413
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=4.2e+02 Score=22.86 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=50.2
Q ss_pred hhHHHHHHhCCcEeccCCcc-cchhhHHHHHHHHcceeEeccccccccccccccccccCHHHHHHHHHHHhcCChhhHHH
Q 044823 371 NSSLEGISAGVQMLTWPLFT-DQFCNEKLIVEVLRIGVSVGVEVPMKFGEEEKIGVLVKKEDVETAINILMDDGEERDGR 449 (497)
Q Consensus 371 gs~~eal~~GvP~l~~P~~~-DQ~~na~~~~e~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~ 449 (497)
-|+.|-..+|.=.+-==-+. =+..|+++. ++.|.=-.+-.+ ..+.+.|.++..+-|+|. ..+.+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk-------------g~~k~~Il~a~~~Rl~n~-~e~E~ 152 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK-------------GNTKDTILAAFERRLDND-REQEF 152 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec-------------CCCHHHHHHHHHHHhccc-HHHHH
Confidence 35666666665433211111 145699999 599998777665 578999999999988874 44466
Q ss_pred HHHHHHHHHHHH
Q 044823 450 RRRAKEFGELAK 461 (497)
Q Consensus 450 ~~~a~~~~~~~~ 461 (497)
++.+.++.++.+
T Consensus 153 ~tAl~eI~rIA~ 164 (176)
T COG3195 153 ATALAEIERIAL 164 (176)
T ss_pred HHHHHHHHHHHH
Confidence 667666666544
No 414
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=24.05 E-value=1e+02 Score=29.35 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=26.5
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+||.|+-.+..| .++|+.|.++||+|+++.-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 468888888777 47899999999999999644
No 415
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.01 E-value=1e+02 Score=29.93 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=28.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
.|||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5689999888888 46889999999999999764
No 416
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.00 E-value=1.5e+02 Score=29.26 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=53.9
Q ss_pred CHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhh-H--HHHhcCC--Ceeeecccch---HhhhccCCcccccc
Q 044823 295 TSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEEN-F--EERIKGR--GLLIRGWAPQ---VMILSHPAVGGFLT 366 (497)
Q Consensus 295 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~-~--~~~~~~~--nv~v~~~~pq---~~lL~~~~~~~~It 366 (497)
.+.-+..++++++..+.++...+..+.....+..| ++.. + +.....+ .+.+.++++| +.+|-.|++ =+-
T Consensus 191 e~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~-l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~--NfV 267 (371)
T TIGR03837 191 ENAALPALLDALAQSGSPVHLLVPEGRALAAVAAW-LGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL--NFV 267 (371)
T ss_pred CChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHH-hCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh--cEe
Confidence 34456666777766666655444443332223222 2110 0 0001122 3557789987 558888887 233
Q ss_pred ccCchhHHHHHHhCCcEeccCCcccchhhHH
Q 044823 367 HCGWNSSLEGISAGVQMLTWPLFTDQFCNEK 397 (497)
Q Consensus 367 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~ 397 (497)
. |==|...|..+|+|+|= +.+=|.++|.
T Consensus 268 R-GEDSFVRAqWAgkPfvW--hIYPQeddaH 295 (371)
T TIGR03837 268 R-GEDSFVRAQWAGKPFVW--HIYPQEEDAH 295 (371)
T ss_pred e-chhHHHHHHHcCCCcee--ecccCchhhH
Confidence 3 44599999999999873 3344555554
No 417
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=23.82 E-value=1e+02 Score=31.15 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=25.2
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
|||.++-.+..| +.+|..|+++||+|+++-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 478888777666 6889999999999998854
No 418
>PRK04148 hypothetical protein; Provisional
Probab=23.75 E-value=1.5e+02 Score=24.61 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
+.++|+.+-.| .| ..+|..|++.||+|+.+=
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaID 46 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVID 46 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEE
Confidence 44788888887 44 346888999999999883
No 419
>PRK05541 adenylylsulfate kinase; Provisional
Probab=23.66 E-value=1.9e+02 Score=24.93 Aligned_cols=42 Identities=7% Similarity=0.058 Sum_probs=36.3
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
|+++.++.-|+|.-.++.|-..-.-.|++.|...|..+.++.
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 788888888888888899999999999999988888877764
No 420
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.61 E-value=1.5e+02 Score=27.85 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=29.7
Q ss_pred CCcEEEEecCC--CcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 6 SNFHFILLPFL--AQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 6 ~~~~vl~~~~p--~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
+..|++.++.+ +.|-..-.+.||..|++.|++|.++=.
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 44566655554 678888889999999999999999833
No 421
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.56 E-value=1e+02 Score=26.77 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHH-HhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccc--c---CCCCCCC------CC
Q 044823 18 QGHLIPMFDIARLL-AQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQE--A---GLPEGCE------NF 85 (497)
Q Consensus 18 ~GHv~P~l~LA~~L-~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~--~---~~~~~~~------~~ 85 (497)
.+.+.-.+..|+.| .+.|.+|.+.-.. +...+++. .++..+.++....+ . ....... ..
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~--------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH--------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh--------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 35677788899999 7889999887543 22223222 14555555543322 0 0000000 00
Q ss_pred CCCCchhHHHHHHHH---------HHhchHHHHHHHhhcCCCCeEEEECCCCcchHHHHHHcCCCeEEEechhH
Q 044823 86 DMLPSIDLAYNFLTS---------LQKLQLPFENLFREQTPQPCCIISDMCIPWTVDTAAKFNVPRIIFHGFSC 150 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~i~~~~~~~ 150 (497)
........+..++.. .+.+...+.++.+ .++|+||.+. ....+|+++|+|++.+.++.-
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGG---VVCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESH---HHHHHHHHTTSEEEESS--HH
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCH---HHHHHHHHcCCcEEEEEecHH
Confidence 001111223332211 1223334444444 4899999995 357899999999999866443
No 422
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=3.8e+02 Score=25.22 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhh--------------------------CCChHHHHHHHHHHHh
Q 044823 429 KEDVETAINILMDDGEERDGRRRRAKEFGELAKRALEE--------------------------GGSSYNNIKFFHPRYH 482 (497)
Q Consensus 429 ~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------~g~~~~~~~~~~~~~~ 482 (497)
...+.+.+.+++.|+|.++.|++++-+++.+....+.+ .|.+..++++.++++.
T Consensus 54 ~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr~~~~~~~~dl~~Avk~ai~GN~iDfgv~G~~~~~lee~~~~~~ 133 (285)
T COG1578 54 GTLIHREVYKILGNEDPYKEYKRRANEIALKVLPKVRENIEDTPEDLKTAVKLAIVGNVIDFGVLGFSPFDLEEEVEKLL 133 (285)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcceeeccccCCHhHHHHHHHHhh
Confidence 35577788888888888888888877776665554444 2456677777777776
Q ss_pred hccCccCC
Q 044823 483 ATADLRSD 490 (497)
Q Consensus 483 ~~~~~~~~ 490 (497)
.+--...|
T Consensus 134 ~~~l~i~d 141 (285)
T COG1578 134 DAELYIDD 141 (285)
T ss_pred cCcccccc
Confidence 55444333
No 423
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=23.44 E-value=1.4e+02 Score=28.16 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=30.6
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
.+|+|+-=++-|-..-.+.||..|+++|++|.++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 4677777779999999999999999999999988
No 424
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=23.17 E-value=1.4e+02 Score=24.34 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=28.2
Q ss_pred eEEEEeeCCcccCCHhhHHHHHHHHHh--CCCCeEEEEeC
Q 044823 282 SVVYVCLGSICNLTSSQLIELGLGLEA--SKKPFIWVSRV 319 (497)
Q Consensus 282 ~vv~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~ 319 (497)
.+|+++|||........+..+.+.+++ .+..+-|.+-.
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999987556677888888863 35577777643
No 425
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.04 E-value=1.4e+02 Score=24.06 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
+...|+++++++. +...+..++.|.+.|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 3456788888776 46678888888888888877643
No 426
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=23.03 E-value=2.8e+02 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=24.4
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhC--CCCeEEEE
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEAS--KKPFIWVS 317 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~ 317 (497)
+|+++.||........+..+.+.+++. ...+-+.+
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 38 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAF 38 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999998765566778888888753 34554443
No 427
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=23.03 E-value=18 Score=19.88 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=13.1
Q ss_pred CchhHHHHHHhCCcEec
Q 044823 369 GWNSSLEGISAGVQMLT 385 (497)
Q Consensus 369 G~gs~~eal~~GvP~l~ 385 (497)
|.|+++-.|..|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888664
No 428
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=1.5e+02 Score=29.83 Aligned_cols=37 Identities=27% Similarity=0.113 Sum_probs=28.3
Q ss_pred CCCcEEEEecCCC--cCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 5 TSNFHFILLPFLA--QGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 5 ~~~~~vl~~~~p~--~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+..++|++++.|+ .|+- +..|++|+..||.++++.+.
T Consensus 264 ~~~P~V~Ilcgpgnnggdg---~v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 264 HQWPLVAILCGPGNNGGDG---LVCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCCceEEEEeCCCCccchh---HHHHHHHHHcCceeEEEeec
Confidence 4456799999986 3333 23999999999999988664
No 429
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.80 E-value=1.4e+02 Score=29.82 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCcEEEEecC--CCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 6 SNFHFILLPF--LAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 6 ~~~~vl~~~~--p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
++++|+.+.. |+.|-..-.+.||..|+.+|+.|.++=
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID 140 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAID 140 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4456655544 489999999999999999999999983
No 430
>PRK05973 replicative DNA helicase; Provisional
Probab=22.75 E-value=2.2e+02 Score=26.28 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=40.9
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHHHHH
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFKTVLAR 56 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~ 56 (497)
-=+++...|+.|-..-.+.++...+.+|+.|.|++.+.....+.+....
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHH
Confidence 3467788889999999999999999999999999999877766665443
No 431
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.63 E-value=1.5e+02 Score=28.11 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred CcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCC---------CeeeecccchHh---hhc
Q 044823 290 SICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGR---------GLLIRGWAPQVM---ILS 357 (497)
Q Consensus 290 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~---------nv~v~~~~pq~~---lL~ 357 (497)
|........+...++-+++.+.+++..+......++ +.+.|....... .+.+.+|+||+. +|.
T Consensus 182 slFaY~npa~~s~ieq~r~a~~p~llL~~e~~~~~~-----~~~~~~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~ 256 (370)
T COG4394 182 SLFAYENPALPSWIEQLRKADKPILLLIPEGKTQAN-----FAKYFDNNNNADGDVFQTAKLRVVKLPFVPQDDYDELLW 256 (370)
T ss_pred hhhccCCcchHHHHHHHHhcCCCEEEEcccchHHHH-----HHHHcCCCcccccchhcccceEEEEecCCcHhHHHHHHH
Q ss_pred cCCccccccccCchhHHHHHHhCCcEe
Q 044823 358 HPAVGGFLTHCGWNSSLEGISAGVQML 384 (497)
Q Consensus 358 ~~~~~~~ItHgG~gs~~eal~~GvP~l 384 (497)
-|++.++ -|=-|...|..+|+|.+
T Consensus 257 lcD~n~V---RGEDSFVRAq~agkPfl 280 (370)
T COG4394 257 LCDFNLV---RGEDSFVRAQLAGKPFL 280 (370)
T ss_pred hccccee---ecchHHHHHHHcCCCcE
No 432
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.50 E-value=1.3e+02 Score=21.98 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 044823 23 PMFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 23 P~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
--+.+|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 35789999999999999996643
No 433
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.28 E-value=1.3e+02 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=35.2
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAARFK 51 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~ 51 (497)
..+||++...++-+= .=...|.+.|.++|++|.++.++.....+.
T Consensus 69 ~~k~IllgVtGsIAa-yka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 69 ASKRVTLIIGGGIAA-YKALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CCCEEEEEEccHHHH-HHHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 357888888876554 478899999999999999999886554443
No 434
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.23 E-value=1.6e+02 Score=26.94 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=28.1
Q ss_pred CcEEEEecCCCcCC--HHHHHHHHHHHHhC---CCeEEEEeCC
Q 044823 7 NFHFILLPFLAQGH--LIPMFDIARLLAQH---GATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~~p~~GH--v~P~l~LA~~L~~r---Gh~Vt~~~~~ 44 (497)
+|||++.-+.-+|. +||...+++.|... |++|....-|
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~~~~~v~~~~lP 43 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDGRTIAGATVISRIVP 43 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccccccCCeEEEEEEeC
Confidence 36788888886665 89999999999764 5666554333
No 435
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.13 E-value=1.8e+02 Score=26.24 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=32.4
Q ss_pred cEEEEecCCCcCC--HHHHHHHHHHHHhC---CCeEEEEeCCcchhhhHHHH
Q 044823 8 FHFILLPFLAQGH--LIPMFDIARLLAQH---GATATIVTTPVNAARFKTVL 54 (497)
Q Consensus 8 ~~vl~~~~p~~GH--v~P~l~LA~~L~~r---Gh~Vt~~~~~~~~~~~~~~~ 54 (497)
|+|++.-+.-+|. .||...+++.|... |++|....-|...+...+.+
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~v~~~~LPV~~~~~~~~l 52 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGKKIGDAKVFGRVLPVSFKRAREEL 52 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccccccCCcEEEEEEeCCchHhHHHHH
Confidence 5788888876654 89999999999875 56666655555444444433
No 436
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=22.13 E-value=1.9e+02 Score=25.59 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.1
Q ss_pred hHHHHHHHhhcCCCCeEEEECC--CCcchHHHHHHcCCCeEEEe
Q 044823 105 QLPFENLFREQTPQPCCIISDM--CIPWTVDTAAKFNVPRIIFH 146 (497)
Q Consensus 105 ~~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~i~~~ 146 (497)
...+.+.+++ .++|+|++=. -.+.|..+|..+|+|++.+.
T Consensus 39 ~~~la~~~~~--~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 39 GKEFARRFKD--EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3344444455 6899998533 33578889999999999863
No 437
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=21.94 E-value=2.8e+02 Score=29.33 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=20.9
Q ss_pred ccccccCc------hhHHHHHHhCCcEeccC
Q 044823 363 GFLTHCGW------NSSLEGISAGVQMLTWP 387 (497)
Q Consensus 363 ~~ItHgG~------gs~~eal~~GvP~l~~P 387 (497)
++++|.|- +++++|...++|+|++-
T Consensus 67 v~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 67 VVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 38888774 48889999999999994
No 438
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.88 E-value=4.5e+02 Score=22.85 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=19.3
Q ss_pred eEEEECCCCcchHHHHHHcCCCeEEEec
Q 044823 120 CCIISDMCIPWTVDTAAKFNVPRIIFHG 147 (497)
Q Consensus 120 D~vI~D~~~~~a~~~A~~lgIP~i~~~~ 147 (497)
.++|.|+++. =...+...|+-+|.+-+
T Consensus 113 vvmVGDqL~T-DVlggnr~G~~tIlV~P 139 (175)
T COG2179 113 VVMVGDQLFT-DVLGGNRAGMRTILVEP 139 (175)
T ss_pred EEEEcchhhh-hhhcccccCcEEEEEEE
Confidence 4678887653 34468889999998644
No 439
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=21.83 E-value=1.9e+02 Score=24.88 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=20.5
Q ss_pred eEEEEeeCCcccCCHhhHHHHHHHHHhC
Q 044823 282 SVVYVCLGSICNLTSSQLIELGLGLEAS 309 (497)
Q Consensus 282 ~vv~vs~GS~~~~~~~~~~~~~~al~~~ 309 (497)
..+|+++||........+...++.|...
T Consensus 8 ~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 8 ALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3699999999865566666666666653
No 440
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=21.83 E-value=7.1e+02 Score=24.89 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCeEEEEeCC----------------cchhhhHHHHHHhhhcCCCeEEEEe
Q 044823 25 FDIARLLAQHGATATIVTTP----------------VNAARFKTVLARALQCRLQIRLIEI 69 (497)
Q Consensus 25 l~LA~~L~~rGh~Vt~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~~i 69 (497)
-.+-+.|+++|.+|+.+... .+.+.+...++.......++-|..+
T Consensus 217 pTvld~l~~aG~~V~~VGki~DiF~g~Glt~a~~~~~~~~~~~~~l~aL~~~~~~lif~nl 277 (381)
T TIGR01696 217 PTVLQKLKDEGHDVISIGKIADIYDGEGITKKVRTTSNMDGMDATIKEMKEDFTGISFTNL 277 (381)
T ss_pred CCHHHHHHHCCCeEEEEccHHhEecCCCcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 35778999999999988544 3455566655554433345666655
No 441
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=21.79 E-value=2.1e+02 Score=28.13 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCCeeeecccchHhhh-ccCCcccccccc---Cch-hHHHHHHhCCcEeccCCcccchhhHHHHHHHHcceeEecccccc
Q 044823 341 GRGLLIRGWAPQVMIL-SHPAVGGFLTHC---GWN-SSLEGISAGVQMLTWPLFTDQFCNEKLIVEVLRIGVSVGVEVPM 415 (497)
Q Consensus 341 ~~nv~v~~~~pq~~lL-~~~~~~~~ItHg---G~g-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~G~~l~~~~~~ 415 (497)
.....+.+..+-...| .|.++ +|+|= |.| ...|+|+-|-|+|- |+..+ .+ +|-..+.
T Consensus 252 ~gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l-~d--~GYYY~~---- 313 (364)
T PF10933_consen 252 DGKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLVH---------NSPLL-KD--VGYYYPD---- 313 (364)
T ss_pred cCeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCccc---------Ccchh-cc--cCcCCCC----
Confidence 4556666666665544 47777 99994 444 56799999999984 88878 34 7777753
Q ss_pred ccccccccccccCHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 044823 416 KFGEEEKIGVLVKKEDVETAINILMDD-GEERDGRRRRAKEFGELAKRALEEGGSSYNNIKFFHPRY 481 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 481 (497)
++..+=.+++.+++.+ ...-+.|+++|+++=..+. -....+++.+.++|
T Consensus 314 -----------fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~------p~n~~nv~~y~~~L 363 (364)
T PF10933_consen 314 -----------FDAFEGARQLLRAIREHDADLDAYRARARRLLDRLS------PENPANVRAYEARL 363 (364)
T ss_pred -----------ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhC------CCCHHHHHHHHHhh
Confidence 3554444555554432 2345699999988766643 12335555554443
No 442
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=21.77 E-value=1.5e+02 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=30.0
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
.|.|+.=|+-|-..-.+.||.+|+++|++|.++
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 577777779999999999999999999999998
No 443
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=21.75 E-value=1.7e+02 Score=28.91 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
++|+|+++ ++.|.+- ..|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 56788766 5556554 4689999999999998864
No 444
>PRK11269 glyoxylate carboligase; Provisional
Probab=21.73 E-value=4.2e+02 Score=28.23 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=20.2
Q ss_pred cccccC------chhHHHHHHhCCcEeccC
Q 044823 364 FLTHCG------WNSSLEGISAGVQMLTWP 387 (497)
Q Consensus 364 ~ItHgG------~gs~~eal~~GvP~l~~P 387 (497)
+++|.| .+++.+|...++|+|++.
T Consensus 72 ~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 72 CIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 666666 679999999999999985
No 445
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=21.56 E-value=7.6e+02 Score=24.07 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=24.7
Q ss_pred CCCeEEE-ECCCC-cchHHHHHHcCCCeEEEech
Q 044823 117 PQPCCII-SDMCI-PWTVDTAAKFNVPRIIFHGF 148 (497)
Q Consensus 117 ~~~D~vI-~D~~~-~~a~~~A~~lgIP~i~~~~~ 148 (497)
..||+|| .|+.. ..+..=|.++|||.|.+.-+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 5799765 67644 57888999999999997433
No 446
>PLN00016 RNA-binding protein; Provisional
Probab=21.50 E-value=1.2e+02 Score=30.23 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=24.9
Q ss_pred CcEEEEec--CCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 7 NFHFILLP--FLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~--~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+++|+++. .++.|.+- ..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 45777761 23444443 46789999999999998754
No 447
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.43 E-value=1.1e+02 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.061 Sum_probs=27.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
..+|.++-.+..| ..+|..|+.+||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 3589999888888 45888999999999999653
No 448
>PRK11914 diacylglycerol kinase; Reviewed
Probab=21.42 E-value=2.3e+02 Score=27.11 Aligned_cols=81 Identities=6% Similarity=-0.088 Sum_probs=0.0
Q ss_pred EEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchHhhhccCCcc
Q 044823 283 VVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQVMILSHPAVG 362 (497)
Q Consensus 283 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~ 362 (497)
++.++--|......+.+..+.+.|++.+..+........... .-+-........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~-----------------------~~~a~~~~~~~~d~- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDA-----------------------RHLVAAALAKGTDA- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHH-----------------------HHHHHHHHhcCCCE-
Q ss_pred ccccccCchhHHHHH----HhCCcEeccCC
Q 044823 363 GFLTHCGWNSSLEGI----SAGVQMLTWPL 388 (497)
Q Consensus 363 ~~ItHgG~gs~~eal----~~GvP~l~~P~ 388 (497)
+|--||=||+.|++ ..++|+-++|.
T Consensus 68 -vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 -LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred -EEEECCchHHHHHhHHhccCCCcEEEEeC
No 449
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.40 E-value=3.7e+02 Score=27.40 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=35.2
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
+.-|+|+-.++.|-..-...||..|+.+|+.|.+++...+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 345667777799999999999999999999999998876554
No 450
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=21.38 E-value=2.3e+02 Score=22.21 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=25.8
Q ss_pred EEEEecC--CCcCC-HHHHHHHHHHHHhCC---CeEEEEeCCc
Q 044823 9 HFILLPF--LAQGH-LIPMFDIARLLAQHG---ATATIVTTPV 45 (497)
Q Consensus 9 ~vl~~~~--p~~GH-v~P~l~LA~~L~~rG---h~Vt~~~~~~ 45 (497)
+|+++.. |.... ..-.+.++..+...| |+|.++....
T Consensus 2 ~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~ 44 (122)
T PF02635_consen 2 KVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGD 44 (122)
T ss_dssp EEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GG
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEch
Confidence 4555544 43333 688888999999999 9999997763
No 451
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=21.32 E-value=2.1e+02 Score=23.39 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=25.6
Q ss_pred EEEecCCCcCCHH--HHHHHHHHHHhCC-CeEEEEeCC
Q 044823 10 FILLPFLAQGHLI--PMFDIARLLAQHG-ATATIVTTP 44 (497)
Q Consensus 10 vl~~~~p~~GHv~--P~l~LA~~L~~rG-h~Vt~~~~~ 44 (497)
.++++.|.+|+-+ -.+.+|++|.+.| +.|.++...
T Consensus 4 ~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 4 TIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred EEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 4566777888654 5678899999996 667777654
No 452
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=21.17 E-value=79 Score=29.06 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=28.3
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHH
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLA 32 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~ 32 (497)
|+.+..++|+++.-.|+.|.....+.||++|.
T Consensus 42 ia~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 42 IAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 34556788999999999999999999999996
No 453
>PRK07236 hypothetical protein; Provisional
Probab=21.15 E-value=1.1e+02 Score=30.46 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=29.3
Q ss_pred CCCCCCCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Q 044823 1 MASETSNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTT 43 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~ 43 (497)
|-+ |++++|+++-.+--| +.+|..|+++|++|+++--
T Consensus 1 ~~~-~~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 1 MTH-MSGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCC-CCCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEec
Confidence 444 457899999877444 7899999999999999953
No 454
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.01 E-value=2.2e+02 Score=25.69 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=33.2
Q ss_pred cEEEEecCCCcCC--HHHHHHHHHHHHhC---CCeEEEEeCCcchhhhHHH
Q 044823 8 FHFILLPFLAQGH--LIPMFDIARLLAQH---GATATIVTTPVNAARFKTV 53 (497)
Q Consensus 8 ~~vl~~~~p~~GH--v~P~l~LA~~L~~r---Gh~Vt~~~~~~~~~~~~~~ 53 (497)
|+|++.-+.-+|. .||...++++|... |++|....-|...+...+.
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~~~~~v~~~~LPv~~~~~~~~ 51 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNGSTILKEEVKGVILPVEYEKIEDL 51 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhccccCCceEEEEEeCCcHHHHHHH
Confidence 5688888876655 89999999999874 7777766556554444443
No 455
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.95 E-value=1.5e+02 Score=27.41 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=24.5
Q ss_pred CCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 16 LAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 16 p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
|+-|-..=.-+||..|++.|+.|..+
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 48999999999999999999999988
No 456
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.92 E-value=86 Score=23.37 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 044823 24 MFDIARLLAQHGATATIVTTPV 45 (497)
Q Consensus 24 ~l~LA~~L~~rGh~Vt~~~~~~ 45 (497)
+-.+.++|.++||+|.=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887653
No 457
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=20.82 E-value=1.7e+02 Score=25.97 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=28.7
Q ss_pred cEEEEecCCCcCCHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFD-IARLLAQ-HGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~-LA~~L~~-rGh~Vt~~~~~ 44 (497)
|||+++-...+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 4788888777999999887 5555665 89999888654
No 458
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=20.75 E-value=1.7e+02 Score=29.32 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=30.1
Q ss_pred CCcEEEEecC--CCcCCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 6 SNFHFILLPF--LAQGHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 6 ~~~~vl~~~~--p~~GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
++++|+.+.. |+.|-..-.+.||..|+.+|+.|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3455654444 489999999999999999999999984
No 459
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=20.65 E-value=2.3e+02 Score=26.07 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 044823 16 LAQGHLIPMFDIARLLAQHGATATIVTTPVNAA 48 (497)
Q Consensus 16 p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~ 48 (497)
|+-|-..-.+.||.+|+++|-.|+++=...+.+
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 589999999999999999999999997766654
No 460
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.55 E-value=1.8e+02 Score=23.90 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccCccCCcc
Q 044823 450 RRRAKEFGELAKRALEEGGSSYNNIKFFHPRYHATADLRSDVN 492 (497)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (497)
..-|+.|++..++.+.+|-|-....+-+++++-+.=-.+++++
T Consensus 56 a~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RYG~~Vly~Pp~~ 98 (126)
T TIGR03147 56 SPIAYDLRHEVYSMVNEGKSNQQIIDFMTARFGDFVLYNPPFK 98 (126)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEEecCCCC
Confidence 4678888888888888888777777788888877766666655
No 461
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=20.54 E-value=97 Score=29.29 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCeEEEEeCC
Q 044823 26 DIARLLAQHGATATIVTTP 44 (497)
Q Consensus 26 ~LA~~L~~rGh~Vt~~~~~ 44 (497)
.+|..|++.||+|+++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999864
No 462
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.53 E-value=1.2e+02 Score=27.33 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcc-------hHHHHHHcCCCeEEE
Q 044823 107 PFENLFREQTPQPCCIISDMCIPW-------TVDTAAKFNVPRIIF 145 (497)
Q Consensus 107 ~l~~~l~~~~~~~D~vI~D~~~~~-------a~~~A~~lgIP~i~~ 145 (497)
.+.+.++.....||+||+|..-.. |..+...+|+|+|-+
T Consensus 82 ~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 82 PLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 355555554457999999985532 233444456788875
No 463
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=20.51 E-value=1.7e+02 Score=27.37 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=29.3
Q ss_pred EEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEE
Q 044823 9 HFILLPFLAQGHLIPMFDIARLLAQHGATATIV 41 (497)
Q Consensus 9 ~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~ 41 (497)
.|.+.-=++-|-..-.+.||..|+++|++|.++
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456666679999999999999999999999988
No 464
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.49 E-value=1.6e+02 Score=27.06 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCCCCCCcEEEEecCCCc-CCHHHHHHHHHHHHhCCCeEEEEe
Q 044823 1 MASETSNFHFILLPFLAQ-GHLIPMFDIARLLAQHGATATIVT 42 (497)
Q Consensus 1 m~~~~~~~~vl~~~~p~~-GHv~P~l~LA~~L~~rGh~Vt~~~ 42 (497)
|...++. |+++++..+. +-+- ..+|++|+++|++|.+..
T Consensus 1 ~~~~l~~-k~~lItGas~~~gIG--~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 1 MSGILSG-KKIVVMGVANKRSIA--WGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CccccCC-CEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEec
Confidence 5555543 4566666552 2222 789999999999998764
No 465
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.46 E-value=2.6e+02 Score=21.51 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=27.1
Q ss_pred CCcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 6 SNFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 6 ~~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+.+||+++|..+.+--.-.-.+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 457999999987663333345556666679988877655
No 466
>PRK14974 cell division protein FtsY; Provisional
Probab=20.45 E-value=3.8e+02 Score=26.23 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=34.1
Q ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 044823 7 NFHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTPVN 46 (497)
Q Consensus 7 ~~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~ 46 (497)
+..|+|+-.++.|-..-...||..|..+|+.|.+++....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4567777777999999999999999999999999876644
No 467
>PRK05858 hypothetical protein; Provisional
Probab=20.34 E-value=4.9e+02 Score=27.35 Aligned_cols=24 Identities=4% Similarity=-0.067 Sum_probs=20.2
Q ss_pred cccccCc------hhHHHHHHhCCcEeccC
Q 044823 364 FLTHCGW------NSSLEGISAGVQMLTWP 387 (497)
Q Consensus 364 ~ItHgG~------gs~~eal~~GvP~l~~P 387 (497)
+++|.|- +++.+|...++|+|++.
T Consensus 71 ~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 71 AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 7777774 48899999999999985
No 468
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.31 E-value=2.1e+02 Score=26.02 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=26.6
Q ss_pred cEEEEecCC----CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFL----AQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p----~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
+||+++..+ .-....=++.--..|.+.|++|+++++.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~ 42 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPD 42 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCC
Confidence 367777651 1124556667778899999999999975
No 469
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.25 E-value=6.4e+02 Score=23.53 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCcchhhhHHHHHHhhhcCCCeEEEEecCCccccCCCCCCCCCCCCCchhHHHHHHHHHHhc
Q 044823 25 FDIARLLAQHGATATIVTTPVNAARFKTVLARALQCRLQIRLIEIQFPWQEAGLPEGCENFDMLPSIDLAYNFLTSLQKL 104 (497)
Q Consensus 25 l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (497)
-.+++.+.+.|-+|.+.+...+.+.|..... ...+-+.-+|.+... ..+.... .+. ..+......+
T Consensus 118 ~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~-----~~~~~~Rvlp~~~~~----~~~~~~~-~p~----~~Iia~~GPf 183 (257)
T COG2099 118 EEAAEAAKQLGRRVFLTTGRQNLAHFVAADA-----HSHVLARVLPPPDVL----AKCEDLG-VPP----ARIIAMRGPF 183 (257)
T ss_pred HHHHHHHhccCCcEEEecCccchHHHhcCcc-----cceEEEEEcCchHHH----HHHHhcC-CCh----hhEEEecCCc
Confidence 3566666667777777777776666655421 112323333321100 0000000 000 0111111223
Q ss_pred hH-HHHHHHhhcCCCCeEEEECCCC-----cchHHHHHHcCCCeEEE
Q 044823 105 QL-PFENLFREQTPQPCCIISDMCI-----PWTVDTAAKFNVPRIIF 145 (497)
Q Consensus 105 ~~-~l~~~l~~~~~~~D~vI~D~~~-----~~a~~~A~~lgIP~i~~ 145 (497)
.. .=+.++++ ++.|+||+-..- ..=..+|..+|||+|.+
T Consensus 184 s~~~n~all~q--~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 184 SEEDNKALLEQ--YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred ChHHHHHHHHH--hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 33 33456777 899999976532 12357999999999996
No 470
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=20.22 E-value=1.1e+02 Score=29.41 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=26.3
Q ss_pred cEEEEecCCCcCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 044823 8 FHFILLPFLAQGHLIPMFDIARLLAQHGATATIVTTP 44 (497)
Q Consensus 8 ~~vl~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~ 44 (497)
|||.|+-.+..|. .+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG~-----~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGT-----ALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCEEEEEECC
Confidence 5899998887774 5788899999999988653
No 471
>PRK10637 cysG siroheme synthase; Provisional
Probab=20.12 E-value=3.7e+02 Score=27.58 Aligned_cols=152 Identities=10% Similarity=-0.012 Sum_probs=71.9
Q ss_pred hhccCCCCeEEEEeeCCcccCCHhhHHHHHHHHHhCCCCeEEEEeCCCchhhhhhhhchhhHHHHhcCCCeeeecccchH
Q 044823 274 WLDSQQPSSVVYVCLGSICNLTSSQLIELGLGLEASKKPFIWVSRVGNKLEELEKWLVEENFEERIKGRGLLIRGWAPQV 353 (497)
Q Consensus 274 ~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~ 353 (497)
|++-.. ++++.|..|.... .=++.|...+.++.+....-. +++.+-....++....---+.
T Consensus 7 ~~~l~~-~~vlvvGgG~vA~-------rk~~~ll~~ga~v~visp~~~-----------~~~~~l~~~~~i~~~~~~~~~ 67 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVAE-------RKARLLLDAGARLTVNALAFI-----------PQFTAWADAGMLTLVEGPFDE 67 (457)
T ss_pred EEEcCC-CEEEEECCCHHHH-------HHHHHHHHCCCEEEEEcCCCC-----------HHHHHHHhCCCEEEEeCCCCh
Confidence 444433 4588888776652 223455567888777643211 122221123344332222233
Q ss_pred hhhccCCccccccccCchhHHHHHH-----hCCcEeccCCcccchh-----hHHHHHHHHcceeEecccccccccccccc
Q 044823 354 MILSHPAVGGFLTHCGWNSSLEGIS-----AGVQMLTWPLFTDQFC-----NEKLIVEVLRIGVSVGVEVPMKFGEEEKI 423 (497)
Q Consensus 354 ~lL~~~~~~~~ItHgG~gs~~eal~-----~GvP~l~~P~~~DQ~~-----na~~~~e~~G~G~~l~~~~~~~~~~~~~~ 423 (497)
.-+..+.+ +|.--+--.+.+.++ .|+++-+ .|++. +-..+ ++-++-+.+...- +
T Consensus 68 ~dl~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~-~~g~l~iaisT~G---------~ 131 (457)
T PRK10637 68 SLLDTCWL--AIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSII-DRSPLMVAVSSGG---------T 131 (457)
T ss_pred HHhCCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEE-ecCCEEEEEECCC---------C
Confidence 34555554 555544444444333 3444332 23322 22233 2434444444430 0
Q ss_pred ccccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 044823 424 GVLVKKEDVETAINILMDDGEERDGRRRRAKEFGELAKRA 463 (497)
Q Consensus 424 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~~ 463 (497)
. -.-+..|++.|.+++ +++.+.+-+...++++.+++.
T Consensus 132 s-P~~a~~lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~~ 168 (457)
T PRK10637 132 S-PVLARLLREKLESLL--PQHLGQVAKYAGQLRGRVKQQ 168 (457)
T ss_pred C-cHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHh
Confidence 1 123356888888887 333445666666666666544
No 472
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=20.07 E-value=1e+02 Score=24.85 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcc
Q 044823 21 LIPMFDIARLLAQHGATATIVTTPVN 46 (497)
Q Consensus 21 v~P~l~LA~~L~~rGh~Vt~~~~~~~ 46 (497)
+.|++.+.-...-+||+++++.|..+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY 34 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYY 34 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHH
Confidence 56888888888899999999998743
Done!