BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044824
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/390 (45%), Positives = 243/390 (62%), Gaps = 6/390 (1%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
RRVVVTGLGA+TP+G F+ L G SG+ I FD S LP RIA E+ + +
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAYL 60
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K +R D ++ YALIA + AL DAG+ + +L+ R G L+GT +G M +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 169 A-IKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIK 227
++ ++SPF +P + +MASA IAM + GP+ + +ACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 228 GDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVIL 287
G+ADL+L GG++ I P I F LS RN +P KASRP+ RDGFVMGEGAGV++
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 288 LEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVNY 347
LE EHAK+RGA IYAE +G + DA+H +E +G GA M +AL ++G++ E V Y
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGY 297
Query: 348 INAHATSTRVGDPREFKAVMHCFGQNPE-LRMNSTKSMTGHLLGAAGAVEAIATVKAIQT 406
INAH TST VGD E A+ FG + + L ++STKSM GHLLGAAGAVEAIATV+A+
Sbjct: 298 INAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 407 GWIHPNINLENPDKDVDTRVLVGPKKERLD 436
G I P INLE+PD ++D + P++ ++D
Sbjct: 358 GVIPPTINLEDPDPELDLDFVPEPREAKVD 387
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/396 (43%), Positives = 238/396 (60%), Gaps = 6/396 (1%)
Query: 48 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGL 107
K+RVVVTGLGA+TP+G+ ++ L+EG +GI I FD S+ R GE+K
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 65
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGI 167
+ K AKR D + +A+ A ++A+ DA + V ELN + GVLIGT +G ++ L+D
Sbjct: 66 LDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQ 122
Query: 168 DAI-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
+ + SPF +P + +MAS + A++L GPN +ACA + I A +
Sbjct: 123 TILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 182
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVI 286
G A M+CGG++ I P AGF + LS RN DP ASRP+D DRDGFVMGEG+G++
Sbjct: 183 NGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 242
Query: 287 LLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVN 346
+LEELE A RGA+IY E +G + TCDAYH + DG GA + AL +SG+ E V+
Sbjct: 243 ILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVS 302
Query: 347 YINAHATSTRVGDPREFKAVMHCFGQNP-ELRMNSTKSMTGHLLGAAGAVEAIATVKAIQ 405
YINAH TST D E +A+ G + + ++STKSMTGHLLG +G +EA+ATV AI
Sbjct: 303 YINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIA 362
Query: 406 TGWIHPNINLENPDKDVDTRVLVGPKKERLDIKVAM 441
+ P INLENPD + D + G + L + VA+
Sbjct: 363 EDKVPPTINLENPDPECDLDYVPG-QSRALIVDVAL 397
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 275 bits (702), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/405 (39%), Positives = 239/405 (59%), Gaps = 27/405 (6%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+RVV+TG+GA++P+G+D + L+GV+GI +I D +AGE+K + +
Sbjct: 28 KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHI 87
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKN---RCGVLIGTAMGSMRALKD 165
K A+R D + YA++A ++A+ DA + ++N+N R GV IG+ +G
Sbjct: 88 DKKEARRMDRFTQYAIVAAREAVKDAQL------DINENTADRIGVWIGSGIG------- 134
Query: 166 GIDAIKISYKKM--------SPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCC 217
G++ +I++K++ SPF VP + MA+ +++DL GPN A +ACAT
Sbjct: 135 GMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNS 194
Query: 218 ILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGF 277
I A + +GDAD M+ GG++ I IAGF A LS N D A RP+ RDGF
Sbjct: 195 IGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGF 253
Query: 278 VMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTN 337
VMGEGAG++++E LE A+ RGA IYAE +G T DAYH + +G G M+ A+ +
Sbjct: 254 VMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDD 313
Query: 338 SGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQNPE-LRMNSTKSMTGHLLGAAGAVE 396
+G+ +DV Y+NAH TST VGD E KA+ + FG+ + L+++STKSMTGHLLGA G +E
Sbjct: 314 AGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIE 373
Query: 397 AIATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKERLDIKVAM 441
AI + +I+ + P I+ PD + D + V + + LDI AM
Sbjct: 374 AIFSALSIKDSKVAPTIHAVTPDPECDLDI-VPNEAQDLDITYAM 417
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 237/380 (62%), Gaps = 9/380 (2%)
Query: 48 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGL 107
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQVSGELNKNRCGVLIGTAMGSMRALKD 165
+ K ++ D ++ Y ++AG +A+ D+G ITE+ N R G IG+ +G + +++
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 116
Query: 166 GIDAI-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANH 224
++ +K+SPF VP ++ +M + + + GP+ +I++AC + I AA
Sbjct: 117 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 176
Query: 225 IIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAG 284
I GDAD+M+ GG++ P G+ GF A LS RN +P ASRPWD +RDGFV+G+GAG
Sbjct: 177 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 236
Query: 285 VILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSRED 344
+++LEE EHAK+RGA+IYAE +G + DAYH + +G GA M AL ++G+
Sbjct: 237 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQ 296
Query: 345 VNYINAHATSTRVGDPREFKAVMHCFGQ-NPELRMNSTKSMTGHLLGAAGAVEAIATVKA 403
+ Y+NAH TST GD E +AV FG+ + ++STKSMTGHLLGAAGAVE+I ++ A
Sbjct: 297 IGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILA 356
Query: 404 IQTGWIHPNINLENPDKDVD 423
++ + P INL+NPD+ D
Sbjct: 357 LRDQAVPPTINLDNPDEGCD 376
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/380 (41%), Positives = 237/380 (62%), Gaps = 9/380 (2%)
Query: 48 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGL 107
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQVSGELNKNRCGVLIGTAMGSMRALKD 165
+ K ++ D ++ Y ++AG +A+ D+G ITE+ N R G IG+ +G + +++
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 166 GIDAI-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANH 224
++ +K+SPF VP ++ +M + + + GP+ +I++AC + I AA
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 191
Query: 225 IIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAG 284
I GDAD+M+ GG++ P G+ GF A LS RN +P ASRPWD +RDGFV+G+GAG
Sbjct: 192 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 251
Query: 285 VILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSRED 344
+++LEE EHAK+RGA+IYAE +G + DAYH + +G GA M AL ++G+
Sbjct: 252 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQ 311
Query: 345 VNYINAHATSTRVGDPREFKAVMHCFGQ-NPELRMNSTKSMTGHLLGAAGAVEAIATVKA 403
+ Y+NAH TST GD E +AV FG+ + ++STKSMTGHLLGAAGAVE+I ++ A
Sbjct: 312 IGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILA 371
Query: 404 IQTGWIHPNINLENPDKDVD 423
++ + P INL+NPD+ D
Sbjct: 372 LRDQAVPPTINLDNPDEGCD 391
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 264 bits (675), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 236/380 (62%), Gaps = 9/380 (2%)
Query: 48 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGL 107
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQVSGELNKNRCGVLIGTAMGSMRALKD 165
+ K ++ D ++ Y ++AG +A+ D+G ITE+ N R G IG+ +G + +++
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 166 GIDAI-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANH 224
++ +K+SPF VP ++ +M + + + GP+ +I++AC + I AA
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 191
Query: 225 IIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAG 284
I GDAD+M+ GG++ P G+ GF A LS RN +P ASRPWD +RDGFV+G+GAG
Sbjct: 192 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 251
Query: 285 VILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSRED 344
+++LEE EHAK+RGA+IYAE +G + DAYH + +G GA M AL ++G+
Sbjct: 252 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQ 311
Query: 345 VNYINAHATSTRVGDPREFKAVMHCFGQ-NPELRMNSTKSMTGHLLGAAGAVEAIATVKA 403
+ Y+NAH TST GD E +AV FG+ + ++ST SMTGHLLGAAGAVE+I ++ A
Sbjct: 312 IGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGAVESIYSILA 371
Query: 404 IQTGWIHPNINLENPDKDVD 423
++ + P INL+NPD+ D
Sbjct: 372 LRDQAVPPTINLDNPDEGCD 391
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 235/380 (61%), Gaps = 9/380 (2%)
Query: 48 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGL 107
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQVSGELNKNRCGVLIGTAMGSMRALKD 165
+ K ++ D ++ Y ++AG +A+ D+G ITE+ N R G IG+ +G + +++
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 166 G-IDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANH 224
+ +K+SPF VP ++ +M + + + GP+ +I++A + I AA
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARI 191
Query: 225 IIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAG 284
I GDAD+M+ GG++ P G+ GF A LS RN +P ASRPWD +RDGFV+G+GAG
Sbjct: 192 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 251
Query: 285 VILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSRED 344
+++LEE EHAK+RGA+IYAE +G + DAYH + +G GA M AL ++G+
Sbjct: 252 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQ 311
Query: 345 VNYINAHATSTRVGDPREFKAVMHCFGQ-NPELRMNSTKSMTGHLLGAAGAVEAIATVKA 403
+ Y+NAH TST GD E +AV FG+ + ++STKSMTGHLLGAAGAVE+I ++ A
Sbjct: 312 IGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILA 371
Query: 404 IQTGWIHPNINLENPDKDVD 423
++ + P INL+NPD+ D
Sbjct: 372 LRDQAVPPTINLDNPDEGCD 391
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 236/380 (62%), Gaps = 9/380 (2%)
Query: 48 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGL 107
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQVSGELNKNRCGVLIGTAMGSMRALKD 165
+ K ++ D ++ Y ++AG +A+ D+G ITE+ N R G IG+ +G + +++
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 166 GIDAI-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANH 224
++ +K+SPF VP ++ +M + + + GP+ +I++A + I AA
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARI 191
Query: 225 IIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAG 284
I GDAD+M+ GG++ P G+ GF A LS RN +P ASRPWD +RDGFV+G+GAG
Sbjct: 192 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 251
Query: 285 VILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSRED 344
+++LEE EHAK+RGA+IYAE +G + DAYH + +G GA M AL ++G+
Sbjct: 252 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQ 311
Query: 345 VNYINAHATSTRVGDPREFKAVMHCFGQ-NPELRMNSTKSMTGHLLGAAGAVEAIATVKA 403
+ Y+NAH TST GD E +AV FG+ + ++STKSMTGHLLGAAGAVE+I ++ A
Sbjct: 312 IGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILA 371
Query: 404 IQTGWIHPNINLENPDKDVD 423
++ + P INL+NPD+ D
Sbjct: 372 LRDQAVPPTINLDNPDEGCD 391
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 258 bits (659), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 219/361 (60%), Gaps = 7/361 (1%)
Query: 50 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVP 109
RVVVTG G +P+G+ F+ L G GI I FD S+ A EI+ D
Sbjct: 24 RVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV 83
Query: 110 PKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDA 169
K R DNY +YAL A ++A+ A + + LN++R GV++ + +G ++ ++D +
Sbjct: 84 KKDTNRFDNYSLYALYAAQEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIEDQVLR 140
Query: 170 I-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIKG 228
+ + K++ P ++P ++ +MAS +AM G +I++AC++SN I A I G
Sbjct: 141 LHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFG 200
Query: 229 DADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVILL 288
D+ML GG++ I P IAGF A LS DPT+AS P+D DR+GFVMGEG+G+++L
Sbjct: 201 FQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVL 259
Query: 289 EELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVNYI 348
E LEHA++RGA I AE +G TCDAYH + +G GA+ ++ AL + +S E V Y+
Sbjct: 260 ESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYV 319
Query: 349 NAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVEAIATVKAIQTGW 408
NAH TST + E A++ G+ E+ ++STKS TGHLLGAAGAVEAI T++A++ +
Sbjct: 320 NAHGTSTPANEKGESGAIVAVLGK--EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNF 377
Query: 409 I 409
+
Sbjct: 378 V 378
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 254 bits (650), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 224/375 (59%), Gaps = 6/375 (1%)
Query: 48 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGL 107
KRRVVVTG+GAVTP+G+DA + +GV+G+++ + + P +IA E+K +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGI 167
+ K A++ D + YA+ + + A+ D+G+ V + N NR GV IG+ +G +
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 168 DA-IKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
+ + ++++SPF VP + S +++ G N +ACAT+ I A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVI 286
+GDAD + GG++ I +AGF A LS N DP A RP+D DRDGF++GEGAG++
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 287 LLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVN 346
+LEE EHAK RGA+IYAE +G T DAYH + +G GA + A+ ++G++ + V+
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVD 298
Query: 347 YINAHATSTRVGDPREFKAVMHCFGQN-PELRMNSTKSMTGHLLGAAGAVEAIATVKAIQ 405
YINAH TST D E +A+ FG++ +L ++STKS TGH LGA+G +EAI + I+
Sbjct: 299 YINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIR 358
Query: 406 TGWIHPNINLENPDK 420
I P I+L+N D+
Sbjct: 359 DNIIAPTIHLKNQDE 373
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 254 bits (649), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 218/361 (60%), Gaps = 7/361 (1%)
Query: 50 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVP 109
RVVVTG G +P+G+ F+ L G GI I FD S+ A EI+ D
Sbjct: 25 RVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV 84
Query: 110 PKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDA 169
K R DNY +YAL A ++A+ A + + LN++R GV++ + +G ++ ++D +
Sbjct: 85 KKDTNRFDNYSLYALYAAQEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIEDQVLR 141
Query: 170 I-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIKG 228
+ + K++ P ++P ++ +MAS +AM G +I++AC++SN I A I G
Sbjct: 142 LHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFG 201
Query: 229 DADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVILL 288
D+ML GG++ I P IAGF A LS DPT+AS P+D DR+GFVMGEG+G+++L
Sbjct: 202 FQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVL 260
Query: 289 EELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVNYI 348
E LEHA++RGA I AE +G TCDAYH + +G GA+ ++ AL + +S E V Y+
Sbjct: 261 ESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYV 320
Query: 349 NAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVEAIATVKAIQTGW 408
NA TST + E A++ G+ E+ ++STKS TGHLLGAAGAVEAI T++A++ +
Sbjct: 321 NAAGTSTPANEKGESGAIVAVLGK--EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNF 378
Query: 409 I 409
+
Sbjct: 379 V 379
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 217/361 (60%), Gaps = 7/361 (1%)
Query: 50 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVP 109
RVVVTG G +P+G+ F+ L G GI I FD S+ A EI+ D
Sbjct: 24 RVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV 83
Query: 110 PKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDA 169
K R DNY +YAL A ++A+ A + LN++R GV++ + +G ++ ++D +
Sbjct: 84 KKDTNRFDNYSLYALYAAQEAVNHANLD---VAALNRDRFGVIVASGIGGIKEIEDQVLR 140
Query: 170 I-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIKG 228
+ + K++ P ++P ++ +MAS +AM G +I++AC++SN I A I G
Sbjct: 141 LHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFG 200
Query: 229 DADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVILL 288
D+ML GG++ I P IAGF A LS DPT+AS P+D DR+GFVMGEG+G+++L
Sbjct: 201 FQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVL 259
Query: 289 EELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVNYI 348
E LEHA++RGA I AE +G TCDAYH + +G GA+ ++ AL + +S E V Y+
Sbjct: 260 ESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYV 319
Query: 349 NAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVEAIATVKAIQTGW 408
NAH TST + E A++ G+ + ++STKS TGHLLGAAGAVEAI T++A++ +
Sbjct: 320 NAHGTSTPANEKGESGAIVAVLGK--AVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNF 377
Query: 409 I 409
+
Sbjct: 378 V 378
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 169/431 (39%), Positives = 247/431 (57%), Gaps = 24/431 (5%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGIS-------QIEGFDC-SELPT--RIAGE 98
RRVVVTGLG VTPLG + +L++G GI +++ FD ++L T +++ +
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 99 IKTLLTDGLVPPK-------HAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGV 151
+ + G P + ++K N++ YA+ A +AL DA + E K R GV
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLP--TEEEEKERTGV 118
Query: 152 LIGTAMGSMRALKDGIDAI-KISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSA 210
IG +GS+ + + I + +++SPF +P + +MAS ++M + GPN+A +A
Sbjct: 119 SIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 211 CATSNCCILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRR-NSDPTKASRP 269
CAT I A I GDAD+M+ GG++ I +AGF LS + NS P +ASRP
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 270 WDSDRDGFVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVA 329
+D DRDGFV+GEG+GVI+LEE EHAKRRGA+IYAE G + DA+H ++ DG GAV
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVL 298
Query: 330 CMEKALTNSGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQNP---ELRMNSTKSMTG 386
M +AL SG+ ++Y+NAHATST +GD E +A+ F ++ L +STK TG
Sbjct: 299 AMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATG 358
Query: 387 HLLGAAGAVEAIATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKERLDIKVAMXXXXX 446
HLLGAAGAVEAI ++ AI G +N++NPD D R + +++ ++ AM
Sbjct: 359 HLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFG 418
Query: 447 XXXXXXXILFA 457
+LFA
Sbjct: 419 FGGTNASLLFA 429
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 251 bits (641), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 219/385 (56%), Gaps = 11/385 (2%)
Query: 47 VKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDG 106
+ RRVV+TG+G VTPLG HL + +L+ G SGI + G + +P +A + +G
Sbjct: 19 LHRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEG 78
Query: 107 ------LVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSM 160
V K + I A+ A + A+ D+G Q E ++ GV IG M +
Sbjct: 79 QFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPL 136
Query: 161 RALKD-GIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCIL 219
+ + ++ Y K+SPF VP + +MA+ +++ + GPN+A+S+AC T +
Sbjct: 137 EVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVG 196
Query: 220 TAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVM 279
+ I GDAD+M+ GG+D I P +AGF LS NSDP A RP+ RDGFVM
Sbjct: 197 DSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVM 255
Query: 280 GEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSG 339
GEGA V++LEE EHA +R A IYAE +G + DA H + +G GA+ CM AL ++G
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAG 315
Query: 340 VSREDVNYINAHATSTRVGDPREFKAVMHCFGQNP-ELRMNSTKSMTGHLLGAAGAVEAI 398
V E+++YINAHATST +GD E KA+ H F + L ++STK TGHLLGAAGAVEA
Sbjct: 316 VQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAA 375
Query: 399 ATVKAIQTGWIHPNINLENPDKDVD 423
T A + P +NL+ + + D
Sbjct: 376 FTTLACYYQKLPPTLNLDCSEPEFD 400
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 153/385 (39%), Positives = 218/385 (56%), Gaps = 11/385 (2%)
Query: 47 VKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDG 106
+ RRVV+TG+G VTPLG HL + +L+ G SGI + G + +P +A + +G
Sbjct: 25 LHRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEG 84
Query: 107 ------LVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSM 160
V K + I A+ A + A+ D+G Q E ++ GV IG M +
Sbjct: 85 QFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPL 142
Query: 161 RALKD-GIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCIL 219
+ + ++ Y K+SPF VP + +MA+ +++ + GPN+A+S+A T +
Sbjct: 143 EVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVG 202
Query: 220 TAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVM 279
+ I GDAD+M+ GG+D I P +AGF LS NSDP A RP+ RDGFVM
Sbjct: 203 DSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVM 261
Query: 280 GEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSG 339
GEGA V++LEE EHA +R A IYAE +G + DA H + +G GA+ CM AL ++G
Sbjct: 262 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAG 321
Query: 340 VSREDVNYINAHATSTRVGDPREFKAVMHCFGQNP-ELRMNSTKSMTGHLLGAAGAVEAI 398
V E+++YINAHATST +GD E KA+ H F + L ++STK TGHLLGAAGAVEA
Sbjct: 322 VQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAA 381
Query: 399 ATVKAIQTGWIHPNINLENPDKDVD 423
T A + P +NL+ + + D
Sbjct: 382 FTTLACYYQKLPPTLNLDCSEPEFD 406
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 237/420 (56%), Gaps = 18/420 (4%)
Query: 50 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTD---G 106
RVVVTG+G V+PLG L + +L+ G SG+ ++ EL ++ G ++ + D G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 107 L-----VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMR 161
VP K ++ D ++ A++A +ALA+AG + E + R ++ + +G
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFP 142
Query: 162 ALKDGIDAIKIS----YKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCC 217
L + A++I +++SPF++P+ ++++A+ I++ + GP +ACA S
Sbjct: 143 GLAE---AVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQA 199
Query: 218 ILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDG 276
I A I G+AD++L GG++ + GF A LS S+ P +ASRP+D DRDG
Sbjct: 200 IGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDG 259
Query: 277 FVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALT 336
FVMGEGA ++++E L+HA RGA AE +G T DAYH + DG GA+ M+ AL
Sbjct: 260 FVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALR 319
Query: 337 NSGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVE 396
V+ E V+Y+NAHATST VGD E +A+ FG ++STKS TGHLLGAAGA+E
Sbjct: 320 MGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIE 379
Query: 397 AIATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKERLDIKVAMXXXXXXXXXXXXILF 456
A ++ A++ G + +NLE+PD D L+GP + +++A+ +LF
Sbjct: 380 AAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLF 439
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/420 (35%), Positives = 236/420 (56%), Gaps = 18/420 (4%)
Query: 50 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTD---G 106
RVVVTG+G V+PLG L + +L+ G SG+ ++ EL ++ G ++ + D G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 107 L-----VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMR 161
VP K ++ D ++ A++A +ALA+AG + E + R ++ + +G
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFP 142
Query: 162 ALKDGIDAIKIS----YKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCC 217
L + A++I +++SPF++P+ ++++A+ I++ + GP +A A S
Sbjct: 143 GLAE---AVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQA 199
Query: 218 ILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDG 276
I A I G+AD++L GG++ + GF A LS S+ P +ASRP+D DRDG
Sbjct: 200 IGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDG 259
Query: 277 FVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALT 336
FVMGEGA ++++E L+HA RGA AE +G T DAYH + DG GA+ M+ AL
Sbjct: 260 FVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALR 319
Query: 337 NSGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVE 396
V+ E V+Y+NAHATST VGD E +A+ FG ++STKS TGHLLGAAGA+E
Sbjct: 320 MGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIE 379
Query: 397 AIATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKERLDIKVAMXXXXXXXXXXXXILF 456
A ++ A++ G + +NLE+PD D L+GP + +++A+ +LF
Sbjct: 380 AAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLF 439
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 234 bits (598), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 158/400 (39%), Positives = 228/400 (57%), Gaps = 23/400 (5%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIK-------T 101
RRVV+TGLG V+PL + +LL G SG ++ F+ +L +IA I T
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 102 LLTDGLVPPKHAKRADNYLIYALIAGKKALADAGI-----TEQVSGELNKNRCGVLIGTA 156
D + PK ++ D +++YA+ A +AL DAG +QV + I
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGI 129
Query: 157 MGSMRALKDGIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNC 216
+ + L+D +++SPF +P + ++AS +++ + GPN+++ +ACAT
Sbjct: 130 VEAGYTLRDK------GPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTH 183
Query: 217 CILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLS-RRNSDPTKASRPWDSDRD 275
I AA I GDAD+M+ GG++ + +AGF AC LS RN DPT ASRP+D DRD
Sbjct: 184 AIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRD 243
Query: 276 GFVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKAL 335
GFVMGEGAG+++LEELEHA RGA+IYAE +G + DA+H + G GA CM AL
Sbjct: 244 GFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAAL 303
Query: 336 TNSGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQ-NPELRMNSTKSMTGHLLGAAGA 394
+G+ ++++YINAH TST + D E AV G+ ++ M+STKS GHLLGAAGA
Sbjct: 304 KRAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGA 362
Query: 395 VEAIATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKER 434
EA+ + AI+ +NL+NP TR+ + P K R
Sbjct: 363 AEAVFSTLAIRDNIAPATLNLDNP--AAQTRIDLVPHKPR 400
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 165/404 (40%), Positives = 231/404 (57%), Gaps = 23/404 (5%)
Query: 45 PEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIK---- 100
P RRVV+TGLG V+PL D + +LLEG SG+ +I FD S+L +IA I
Sbjct: 2 PGSMRRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDG 61
Query: 101 ---TLLTDGLVPPKHAKRADNYLIYALIAGKKALADA-----GITEQVSGELNKNRCGVL 152
T D + K ++ D +++YA+ A +ALADA +Q+ +
Sbjct: 62 TNGTYNADLHMESKEQRKVDAFIVYAIAAADQALADAEWFPKSDEDQICTGVLIGSGIGG 121
Query: 153 IGTAMGSMRALKDGIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACA 212
I + + L+D +++SPF +P + ++AS +++ GPN+++ +AC+
Sbjct: 122 IEGIVEAGYTLRDK------GPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACS 175
Query: 213 TSNCCILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSR-RNSDPTKASRPWD 271
T I AA I GDAD+ML GG++ I +AGF AC LS RN DP +ASRP+D
Sbjct: 176 TGAHAIGDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYD 235
Query: 272 SDRDGFVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACM 331
DRDGFVMGEGA +++LEELEHAK+RGA IYAE +G + DAYH + G GA M
Sbjct: 236 VDRDGFVMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSM 295
Query: 332 EKALTNSGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQN-PELRMNSTKSMTGHLLG 390
AL + V+ +++YINAH TST + D E AV G P++ M+STKS GHLLG
Sbjct: 296 MAALKRAQVNVSELDYINAHGTST-MADVIELAAVERVLGYYAPQVSMSSTKSSIGHLLG 354
Query: 391 AAGAVEAIATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKER 434
AAGA EAI V AI+ +NLENP ++T++ + P K R
Sbjct: 355 AAGAAEAIFCVLAIRDNIAPATLNLENP--SIETKIDLVPHKPR 396
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 217/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSACATS CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 292
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+H TST VGD +E A+ FG ++P + ++TK+MTGH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 351 EHGFIAPSINIEELDEQ 367
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 216/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSACATS CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 292
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+H TST VGD +E A+ FG ++P + ++TK+MTGH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 351 EHGFIAPSINIEELDEQ 367
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 216/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSACATS CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 304
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+H TST VGD +E A+ FG ++P + ++T +MTGH LGAAG EAI ++ +
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATAAMTGHSLGAAGVQEAIYSLLML 362
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 363 EHGFIAPSINIEELDEQ 379
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 216/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSACATS CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 292
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+H TST VGD +E A+ FG ++P + ++T++MTGH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATRAMTGHSLGAAGVQEAIYSLLML 350
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 351 EHGFIAPSINIEELDEQ 367
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 215/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSACATS CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 304
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+ TST VGD +E A+ FG ++P + ++TK+MTGH LGAAG EAI ++ +
Sbjct: 305 DYLNSQGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 363 EHGFIAPSINIEELDEQ 379
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 215/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSACATS CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 304
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+ TST VGD +E A+ FG ++P + ++TK+MTGH LGAAG EAI ++ +
Sbjct: 305 DYLNSEGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 363 EHGFIAPSINIEELDEQ 379
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 212/391 (54%), Gaps = 27/391 (6%)
Query: 39 KSEKVAPEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIE-----GFDCSELPT 93
+++ P RRVVVTG+G V+ +G + L E SGIS+ E GF C
Sbjct: 13 EAQTQGPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRC----- 67
Query: 94 RIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLI 153
++ G + + LV + + + IA +A+ADAG+TE+ E++ R G+++
Sbjct: 68 QVHGA-PDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIM 123
Query: 154 GTAMGSMRALKDGIDAIK-ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACA 212
G+ S R + D D + K++ PF+VP +M+S ASA +A + G NY+ISSACA
Sbjct: 124 GSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACA 183
Query: 213 TSNCCILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWD 271
TSN CI A I G D M GG + + + F A +S + +D P+ ASR +D
Sbjct: 184 TSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYD 242
Query: 272 SDRDGFVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACM 331
+RDGFV+ GAGV++LE+LE A RGA+IY E +G T D Y G GA+ CM
Sbjct: 243 KNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCM 300
Query: 332 EKALTNSGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQN---PELRMNSTKSMTGHL 388
+ AL+ ++YIN HATST GD E +A+ FG P + +TKS+TGH
Sbjct: 301 KMALS---TVTSKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIA--ATKSLTGHS 355
Query: 389 LGAAGAVEAIATVKAIQTGWIHPNINLENPD 419
LGA G EAI ++ +Q +I + ++E D
Sbjct: 356 LGATGVQEAIYSLLMMQNNFICESAHIEELD 386
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 209/385 (54%), Gaps = 27/385 (7%)
Query: 45 PEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIE-----GFDCSELPTRIAGEI 99
P RRVVVTG+G V+ +G + L E SGIS+ E GF C ++ G
Sbjct: 2 PGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRC-----QVHGA- 55
Query: 100 KTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGS 159
+ + LV + + + IA +A+ADAG+TE+ E++ R G+++G+ S
Sbjct: 56 PDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPS 112
Query: 160 MRALKDGIDAIK-ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCI 218
R + D D + K++ PF+VP +M+S ASA +A + G NY+ISSACATSN CI
Sbjct: 113 TRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCI 172
Query: 219 LTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGF 277
A I G D M GG + + + F A +S + +D P+ ASR +D +RDGF
Sbjct: 173 GNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGF 231
Query: 278 VMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTN 337
V+ GAGV++LE+LE A RGA+IY E +G T D Y G GA+ CM+ AL+
Sbjct: 232 VIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS- 288
Query: 338 SGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQN---PELRMNSTKSMTGHLLGAAGA 394
++YIN HATST GD E +A+ FG P + +TKS+TGH LGA G
Sbjct: 289 --TVTSKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIA--ATKSLTGHSLGATGV 344
Query: 395 VEAIATVKAIQTGWIHPNINLENPD 419
EAI ++ +Q +I + ++E D
Sbjct: 345 QEAIYSLLMMQNNFICESAHIEELD 369
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 216/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSA ATS CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 178
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 292
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+H TST VGD +E A+ FG ++P + ++TK+MTGH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 351 EHGFIAPSINIEELDEQ 367
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 216/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSA ATS CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 190
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 304
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+H TST VGD +E A+ FG ++P + ++TK+MTGH LGAAG EAI ++ +
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 363 EHGFIAPSINIEELDEQ 379
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 215/377 (57%), Gaps = 15/377 (3%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 109 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 168
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 169 AIK--ISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
A++ K + P+ V +M S SA +A + G NY+ISSA ATS CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQIQ 178
Query: 227 KGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGAGV 285
G D++ GG + + E F A LS + +D P KASR +D+ RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 286 ILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDV 345
+++EELEHA RGA IYAE +G T D G GAV CM+ A+ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM--HGVDTP-I 292
Query: 346 NYINAHATSTRVGDPREFKAVMHCFG-QNPELRMNSTKSMTGHLLGAAGAVEAIATVKAI 404
+Y+N+H TST VGD +E A+ FG ++P + ++TK+MTGH LGAAG EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 405 QTGWIHPNINLENPDKD 421
+ G+I P+IN+E D+
Sbjct: 351 EHGFIAPSINIEELDEQ 367
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 200/390 (51%), Gaps = 19/390 (4%)
Query: 51 VVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQ-----IEGFDCSELPTRIAGEIKTLLTD 105
VVVTG+ T L DA + LL+ SGI +E FD LP RI G +
Sbjct: 30 VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFD---LPVRIGGHLLEEFDH 86
Query: 106 GLVPPKHAKRADNYLI-YALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALK 164
L + R YL + + ++ +AG S E++ NR V IGT +GS L
Sbjct: 87 QLT--RIELRRMGYLQRMSTVLSRRLWENAG-----SPEVDTNRLMVSIGTGLGSAEELV 139
Query: 165 DGIDAIKI-SYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAAN 223
D ++ K +SP +V M + A+A + ++ SACA+ I A
Sbjct: 140 FSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQ 199
Query: 224 HIIKGDADLMLCGGSDGVIIPEGIAGFIACN-NLSRRNSDPTKASRPWDSDRDGFVMGEG 282
I+ G+AD +CGG + I IAGF +S N DP A RP+D DRDGFV GEG
Sbjct: 200 QIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEG 259
Query: 283 AGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSR 342
++L+E EHAK RGA I A MG S T D +H +G A + +A+ +G++
Sbjct: 260 GALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAP 319
Query: 343 EDVNYINAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVEAIATVK 402
D++++NAHAT T+VGD E +A+ + G N + + KS GH +GA GAVE+I TV
Sbjct: 320 GDIDHVNAHATGTQVGDLAEGRAINNALGGN-RPAVYAPKSALGHSVGAVGAVESILTVL 378
Query: 403 AIQTGWIHPNINLENPDKDVDTRVLVGPKK 432
A++ I P +NL N D ++D V+ G +
Sbjct: 379 ALRDQVIPPTLNLVNLDPEIDLDVVAGEPR 408
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 191/366 (52%), Gaps = 11/366 (3%)
Query: 70 YTKLLEGVSGISQIEGFDCS--ELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAG 127
+ LL G SGI +E + +L +I G +K + H R D + +
Sbjct: 33 WKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVD------SHMGRLDMRRMSYVQRM 86
Query: 128 KKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDAIKIS-YKKMSPFSVPYSM 186
K L S E++ +R V++GT +G + + D + +K+SP +V M
Sbjct: 87 GKLLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIM 146
Query: 187 TSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIKGDADLMLCGGSDGVIIPEG 246
+ A+A+I + L SAC++ + I A I+ GDAD+ +CGG +G I
Sbjct: 147 PNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALP 206
Query: 247 IAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVILLEELEHAKRRGAEIYAEFM 306
IA F +S RN +P +ASRP+D DRDGFV GE ++L+E EHAK RGA+ A +
Sbjct: 207 IAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLL 266
Query: 307 GGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVNYINAHATSTRVGDPREFKAV 366
G T DA+H DG+ A M ++L +G+S D++++NAH T+T +GD E A+
Sbjct: 267 GAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAI 326
Query: 367 MHCFGQNPELRMNSTKSMTGHLLGAAGAVEAIATVKAIQTGWIHPNINLENPDKDVDTRV 426
G + + + + KS GH +GA GA+E++ TV ++ G I P +N E PD ++D V
Sbjct: 327 -RVAGCD-QAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDV 384
Query: 427 LVGPKK 432
+ G +
Sbjct: 385 VAGEPR 390
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 188 bits (477), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 193/396 (48%), Gaps = 11/396 (2%)
Query: 47 VKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDG 106
+KRRVV+TG+G P G+ F+ L G + +I FD S +++A E
Sbjct: 1 MKRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAE 60
Query: 107 LVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALK-- 164
P+ R D +A+ ++A A +G+ L+ R GV +G+A+ + +L+
Sbjct: 61 GFGPRELDRMDRASQFAVACAREAFAASGLDPDT---LDPARVGVSLGSAVAAATSLERE 117
Query: 165 -----DGIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCIL 219
D ++ +S Y + S+ A +A + GP +S+ C + +
Sbjct: 118 YLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVG 177
Query: 220 TAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVM 279
A I +G AD+M G +D I P +A F A + RN DP ASRP+D RDGFV+
Sbjct: 178 NAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVL 237
Query: 280 GEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSG 339
EGA + +LE+ + A RGA I+AE G + C+AYH + + DG + AL S
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 340 VSREDVNYINAHATSTRVGDPREFKAVMHCFGQNPELR-MNSTKSMTGHLLGAAGAVEAI 398
D++YINAH + TR D E A G++ ++S KSM GH LGA G++E
Sbjct: 298 TDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIA 357
Query: 399 ATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKER 434
A V A++ G + P NL D + D + +ER
Sbjct: 358 ACVLALEHGVVPPTANLRTSDPECDLDYVPLEARER 393
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 216/391 (55%), Gaps = 16/391 (4%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTD--G 106
+R V+TGLG V+ +G++ L EG SGI+ + F + + + G++K L ++
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVK-LQSEPKD 63
Query: 107 LVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDG 166
L+ K + + IYA +A ++A+AD+G+++ +++ R G+++G+ GS R G
Sbjct: 64 LIDRKVLRFXSDASIYAYLAXQEAIADSGLSDS---QVSNFRSGLVVGSGGGSPRNQVAG 120
Query: 167 IDAIKI--SYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANH 224
DA + K + P+ V + S SA +A + G NY+ISSACATS CI A
Sbjct: 121 SDAXRTPRGLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALEL 180
Query: 225 IIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSD-PTKASRPWDSDRDGFVMGEGA 283
I G D++ GG + + E F A LS + +D P KASR +D DRDGFV+ G
Sbjct: 181 IQLGKQDIVFAGGGE-ELCWEXACEFDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGG 239
Query: 284 GVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSRE 343
G +++EELEHA RGA IYAE +G T D G GAV C + A +GV
Sbjct: 240 GXVVVEELEHALARGAHIYAEIVGYGATSDGADXVAP--SGEGAVRCXQXAX--AGVDTP 295
Query: 344 DVNYINAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVEAIATVKA 403
++Y N H TST VGD +E A+ FG N ++STK+ TGH LGAAG EAI ++
Sbjct: 296 -IDYXNVHGTSTPVGDVKELGAIREVFGNNTPA-ISSTKAXTGHSLGAAGVHEAIFSLLX 353
Query: 404 IQTGWIHPNINLENPDKDVDTRVLVGPKKER 434
++ G+I P+IN++N D+ ++ +R
Sbjct: 354 VEHGFIAPSINIDNLDEQAQGXNIITETTQR 384
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 189/368 (51%), Gaps = 15/368 (4%)
Query: 70 YTKLLEGVSGISQIEGFDCS--ELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAG 127
+ LL G SGI +E + +L +I G +K + H R D + +
Sbjct: 33 WKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVD------SHMGRLDMRRMSYVQRM 86
Query: 128 KKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDAIKIS-YKKMSPFSVPYSM 186
K L S E++ +R V++GT +G + + D + +K+SP +V M
Sbjct: 87 GKLLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIM 146
Query: 187 TSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIKGDADLMLCGGSDGVIIPEG 246
+ A+A+I + L SA ++ + I A I+ GDAD+ +CGG +G I
Sbjct: 147 PNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALP 206
Query: 247 IAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVILLEELEHAKRRGAEIYAEFM 306
IA F +S RN +P +ASRP+D DRDGFV GE ++L+E EHAK RGA+ A +
Sbjct: 207 IAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLL 266
Query: 307 GGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVNYINAHATSTRVGDPREFKA- 365
G T DA+H DG+ A M ++L +G+S D++++NAH T+T +GD E A
Sbjct: 267 GAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAI 326
Query: 366 -VMHCFGQNPELRMNSTKSMTGHLLGAAGAVEAIATVKAIQTGWIHPNINLENPDKDVDT 424
V C + + + KS GH +GA GA+E++ TV ++ G I P +N E PD ++D
Sbjct: 327 RVAGC----DQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDL 382
Query: 425 RVLVGPKK 432
V+ G +
Sbjct: 383 DVVAGEPR 390
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 189/385 (49%), Gaps = 25/385 (6%)
Query: 45 PEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSE-LPTRIAGEIKTLL 103
P +RVV+TG+G VT LG L G + + ++ +D E L TR+A +
Sbjct: 2 PGSMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFA 61
Query: 104 TDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRAL 163
P K + +YA+ A + ALADAG S ++ R GV G++ GS+ +
Sbjct: 62 QPADWPRKKTRSMGRVSMYAVRASELALADAGFAGDES--ISDGRMGVAYGSSSGSVEPI 119
Query: 164 K---------DGIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATS 214
+ D SY +M P T+ + + DL+ G SSACA+
Sbjct: 120 RAFGTMLESGSMTDVTSNSYVQMMPH------TTAVNVSLFWDLK--GRIVPTSSACASG 171
Query: 215 NCCILTAANHIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDR 274
+ I A +I G LML GG++ + P +A F S RN +P RP+D+ R
Sbjct: 172 SQAIGYAYENIAMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKR 230
Query: 275 DGFVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKA 334
DG V+GEGA ++LEE EHAK RGA I+AE +G D H ++ + M+ A
Sbjct: 231 DGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTM--ARAMQLA 288
Query: 335 LTNSGVSREDVNYINAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGA 394
L ++ + + Y+NAH TST GD E +A FG+ + ++S KS GH LGA GA
Sbjct: 289 LEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGE--RMPISSLKSYVGHTLGACGA 346
Query: 395 VEAIATVKAIQTGWIHPNINLENPD 419
+EA T++ ++ W P +NL D
Sbjct: 347 LEAWWTIEMMKRNWYAPTLNLTEVD 371
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 175/394 (44%), Gaps = 27/394 (6%)
Query: 49 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLV 108
+ V++TG+G V P G +++ +L+G G+ + FD S P +AG+I +
Sbjct: 9 KSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHI 68
Query: 109 PPKHAKRADNYLIYALIAGKKALADA-----GITEQVSGELNKNRCGVLIGTAMGSMRAL 163
P + + D AL A AL DA +T+ G + N CG T +
Sbjct: 69 PGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLW 128
Query: 164 KDGIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAAN 223
+G ++ + Y+ + F Y++ + I++ GP+ A+ + A L A
Sbjct: 129 SEGPKSVSV-YESFAWF---YAVN---TGQISIRHGMRGPSSALVAEQA-GGLDALGHAR 180
Query: 224 HIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGA 283
I+ L++ GG D + P G IA +S +DP +A P+D G+V GEG
Sbjct: 181 RTIRRGTPLVVSGGVDSALDPWGWVSQIASGRIS-TATDPDRAYLPFDERAAGYVPGEGG 239
Query: 284 GVILLEELEHAKRRGA-EIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEK----ALTNS 338
+++LE+ A+ RG + Y E G + T D G G A +E+ AL ++
Sbjct: 240 AILVLEDSAAAEARGRHDAYGELAGCASTFDP-------APGSGRPAGLERAIRLALNDA 292
Query: 339 GVSREDVNYINAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGAVEAI 398
G EDV+ + A D E +A+ FG+ + + K+ TG L G ++ +
Sbjct: 293 GTGPEDVDVVFADGAGVPELDAAEARAIGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVV 351
Query: 399 ATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKK 432
+ +++ G I P + + ++ +++G +
Sbjct: 352 TALMSLREGVIAPTAGVTSVPREYGIDLVLGEPR 385
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 146/321 (45%), Gaps = 21/321 (6%)
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGI 167
V P+ A D L + + +AGI L GV +G A K G
Sbjct: 84 VSPREAAAMDPQQRLLLETSWELVENAGIDPH---SLRGTATGVFLGVA-------KFGY 133
Query: 168 DAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIK 227
+ + + +SV ++AS I+ + GP+ ++ +AC++S + A + K
Sbjct: 134 GEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRK 193
Query: 228 GDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKA-SRPWDSDRDGFVMGEGAGVI 286
G++ + + GG+ V+ G+ F+ + SR+ + S+ + + DGF EG ++
Sbjct: 194 GESSMAVVGGA-AVMATPGV--FV---DFSRQRALAADGRSKAFGAGADGFGFSEGVTLV 247
Query: 287 LLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVN 346
LLE L A+R G E+ A G + D S G + +AL + G+ DV+
Sbjct: 248 LLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVD 307
Query: 347 YINAHATSTRVGDPREFKAVMHCFGQNPE----LRMNSTKSMTGHLLGAAGAVEAIATVK 402
+ AH T T +GDP E A++ +G++ + L + S KS GH AAG + V
Sbjct: 308 AVEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVL 367
Query: 403 AIQTGWIHPNINLENPDKDVD 423
A++ G + +++E P VD
Sbjct: 368 ALRNGELPATLHVEEPTPHVD 388
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 9/243 (3%)
Query: 185 SMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHIIKGDADLMLCGGSDGVIIP 244
+ +S+AS +A L GP + +AC++ + A + + + L L GG P
Sbjct: 173 TASSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSP 232
Query: 245 EGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGAGVILLEELEHAKRRGAEIYAE 304
F + L+ +P+ DGF + EGAGV++L+ L A+R G + A
Sbjct: 233 GAFTEFRSQGGLAADGR-----CKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAV 287
Query: 305 FMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSREDVNYINAHATSTRVGDPREFK 364
G + D + G + +AL N+GV DV+Y+ AH T TR+GDP E
Sbjct: 288 LRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVH 347
Query: 365 AVMHCFG--QNPE--LRMNSTKSMTGHLLGAAGAVEAIATVKAIQTGWIHPNINLENPDK 420
A++ +G ++P+ L + S KS GH AAG V A++ G ++ + P
Sbjct: 348 ALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSP 407
Query: 421 DVD 423
++
Sbjct: 408 QIE 410
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 163/382 (42%), Gaps = 29/382 (7%)
Query: 51 VVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIE---GFDCSELPTRIAGEIKTLLTDGL 107
VV+ G+ P ++ F+ L+ GV ++ + LP R +G++K L
Sbjct: 6 VVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRR-SGKLKDLSRFDA 64
Query: 108 ----VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRAL 163
V PK A D L L +A+ D GI L GV +G + GS +
Sbjct: 65 SFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVS-GSETS- 119
Query: 164 KDGIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAAN 223
+A+ + + +S+ +M + ++ ++ GP+ A+ +AC++S + A
Sbjct: 120 ----EALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQ 175
Query: 224 HIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGA 283
I G + GG + ++ P F+ LS P + +D+ +G+ EG
Sbjct: 176 AIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSEGV 230
Query: 284 GVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNS-GVSR 342
+LL + A+R +YA + D + + + ++L S GV+
Sbjct: 231 VAVLLTKKSLARR----VYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAP 286
Query: 343 EDVNYINAHATSTRVGDPREFKAVMH--CFGQNPELRMNSTKSMTGHLLGAAGAVEAIAT 400
E YI AH T T+VGDP+E + C + L + STKS GH A+G
Sbjct: 287 ESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAKV 346
Query: 401 VKAIQTGWIHPNINLENPDKDV 422
+ +++ G PN++ +P+ ++
Sbjct: 347 LLSLEHGLWAPNLHFHSPNPEI 368
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 29/382 (7%)
Query: 51 VVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIE---GFDCSELPTRIAGEIKTL-LTDG 106
VV+ G+ P ++ F+ L+ GV ++ + LP R+ G++K L D
Sbjct: 4 VVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRM-GKLKDLSRFDA 62
Query: 107 LVPPKHAKRA---DNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRAL 163
H+K+A D L L +A+ D GI L GV +G +
Sbjct: 63 SFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGIN---PASLRGTSTGVWVGVSS------ 113
Query: 164 KDGIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAAN 223
D +A+ + + +S+ +M + ++ ++ GP+ I +AC++S + +A
Sbjct: 114 SDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQ 173
Query: 224 HIIKGDADLMLCGGSDGVIIPEGIAGFIACNNLSRRNSDPTKASRPWDSDRDGFVMGEGA 283
I G+ + GG + ++ P F+ LS+ + R +D++ G+ E
Sbjct: 174 AIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGT-----CRSFDAEGTGYCRAEAV 228
Query: 284 GVILLEELEHAKRRGAEIYAEFM-GGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSR 342
+LL + A+R +YA + G+ T + + + G + +G
Sbjct: 229 VAVLLTKKSLARR----VYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDP 284
Query: 343 EDVNYINAHATSTRVGDPREFKAVMH--CFGQNPELRMNSTKSMTGHLLGAAGAVEAIAT 400
E + YI AH T T+VGDP+E +++ C + L + STKS GH A+G I
Sbjct: 285 ESLEYIEAHGTGTKVGDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKV 344
Query: 401 VKAIQTGWIHPNINLENPDKDV 422
+ +++ G PN++ P+ ++
Sbjct: 345 LLSLEHGVWAPNLHYHTPNPEI 366
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 150/351 (42%), Gaps = 22/351 (6%)
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAGIT-EQVSGELNKNRCGVLIGTAMGSMRALKDG 166
+ P A D ++ ++A A +G T ++ ++ ++ GT MG M +++
Sbjct: 2636 ISPDMASSIDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTM 2695
Query: 167 IDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHII 226
+ K + +A+ ++ + G ACAT+ + + I
Sbjct: 2696 YHGNLLGRAKPNDILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIK 2755
Query: 227 KGDADLMLCGGSDGVIIPEGIAGF-----IACNNLSR-RNSDPTKASRPWDSDRDGFVMG 280
G ADL++ GG D + + E I GF A + R + +K SR D R GF+
Sbjct: 2756 LGKADLVIAGGFDDLTL-EAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRLGFLEA 2814
Query: 281 EGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAV--------ACME 332
+G G ILL + A + G + A D H S GLGA+ + +
Sbjct: 2815 QGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIP-APGLGALGAARGGRESTLA 2873
Query: 333 KALTNSGVSREDVNYINAHATSTRVGDPRE---FKAVMHCFGQNP--ELRMNSTKSMTGH 387
++L GV +D+ I+ H TST DP E + + G+ P L + S K++TGH
Sbjct: 2874 RSLAQLGVGADDIAVISKHDTSTLANDPNETELHERIADSMGRAPGNPLFIVSQKTLTGH 2933
Query: 388 LLGAAGAVEAIATVKAIQTGWIHPNINLENPDKDVDTRVLVGPKKERLDIK 438
G A + + + ++ G I PN +L+ D ++ T +E LD++
Sbjct: 2934 AKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDELATSGHFVWVREPLDLR 2984
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 9/203 (4%)
Query: 108 VPPKHAKRADNYLIYALIAGKKALADAGITE--QVSGELNKNRCGVLIGTAMGSMRALKD 165
VP ++ D +Y L++ +AL +GIT+ + ++ + G IG+ +G AL+
Sbjct: 1175 VPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRG 1234
Query: 166 GIDAIKISYKKMSPFSVPYSMTSMASAIIAMDLEWMGPNYAISSACATSNCCILTAANHI 225
+ + +MA+ + + L GP ACAT+ + + I
Sbjct: 1235 MYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTI 1294
Query: 226 IKGDADLMLCGGSDGVIIPEG---IAGFIACNNLSR---RNSDPTKASRPWDSDRDGFVM 279
++G A + L GG D EG A A +N R +P + SRP + R+GF+
Sbjct: 1295 MQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFME 1353
Query: 280 GEGAGVILLEELEHAKRRGAEIY 302
+G GV ++ + A G IY
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIY 1376
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 21/143 (14%)
Query: 287 LLEELEH----AKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNSGVSR 342
L E EH A+R+ AE F + + + +SR +A + AL G++
Sbjct: 1467 LRERTEHIEREARRQEAEAQTSF------GNEFWRRDSR------IAPLRGALATWGLTI 1514
Query: 343 EDVNYINAHATSTRVGDPREFKAVMHCFGQNPELRMNST-----KSMTGHLLGAAGAVEA 397
+D+ + H TST D E + + N+ K +TGH GAAGA
Sbjct: 1515 DDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWML 1574
Query: 398 IATVKAIQTGWIHPNINLENPDK 420
++ + TG + N N +N DK
Sbjct: 1575 NGCLQVLNTGIVPGNRNADNVDK 1597
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 115 RADNYLIYALIAGKKALADAGITE--QVSGELNKNRCGVLIGTAMGSMRALKDGIDAIKI 172
+ D ++ L++ +A +GIT+ ++ ++ + G G+ MG + AL+ G+ +
Sbjct: 1008 QVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALR-GMFKDRF 1066
Query: 173 SYKKMSPFSVPYSMTSMASAIIAMDL-EWMGPNYAISSACATSNCCILTAANHIIKGDAD 231
+ + + S + SA + M L GP ACATS + I+ G A
Sbjct: 1067 KDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKAR 1126
Query: 232 LMLCGGSDGVIIPEGIAGF----IACNNLSR--RNSDPTKASRPWDSDRDGFVMGEGAGV 285
+ + GG D EG F N L P + SRP + R+GF+ +GAG+
Sbjct: 1127 ICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGI 1185
Query: 286 ILLEELEHAKRRGAEIY 302
++ + + A + G IY
Sbjct: 1186 QIIMQADLALKMGVPIY 1202
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 328 VACMEKALTNSGVSREDVNYINAHATSTRVGDPRE---FKAVMHCFGQ---NPELRMNST 381
+A + AL G++ +D+ + H TST+ D E +M G+ NP + +
Sbjct: 1320 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGV-FQ 1378
Query: 382 KSMTGHLLGAAGAVEAIATVKAIQTGWIHPNINLENPDK 420
K +TGH GAAGA ++ + +G I N N +N DK
Sbjct: 1379 KFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDK 1417
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 115 RADNYLIYALIAGKKALADAGITE--QVSGELNKNRCGVLIGTAMGSMRALKDGIDAIKI 172
+ D ++ L++ +A +GIT+ ++ ++ + G G+ MG + AL+ G+ +
Sbjct: 1207 QVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALR-GMFKDRF 1265
Query: 173 SYKKMSPFSVPYSMTSMASAIIAMDL-EWMGPNYAISSACATSNCCILTAANHIIKGDAD 231
+ + + S + SA + M L GP ACATS + I+ G A
Sbjct: 1266 KDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKAR 1325
Query: 232 LMLCGGSDGVIIPEGIAGF----IACNNLSR--RNSDPTKASRPWDSDRDGFVMGEGAGV 285
+ + GG D EG F N L P + SRP + R+GF+ +GAG+
Sbjct: 1326 ICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGI 1384
Query: 286 ILLEELEHAKRRGAEIY 302
++ + + A + G IY
Sbjct: 1385 QIIMQADLALKMGVPIY 1401
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 328 VACMEKALTNSGVSREDVNYINAHATSTRVGDPRE---FKAVMHCFGQ---NPELRMNST 381
+A + AL G++ +D+ + H TST+ D E +M G+ NP + +
Sbjct: 1519 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQ- 1577
Query: 382 KSMTGHLLGAAGAVEAIATVKAIQTGWIHPNINLENPDK 420
K +TGH GAAGA ++ + +G I N N +N DK
Sbjct: 1578 KFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDK 1616
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 115 RADNYLIYALIAGKKALADAGITE--QVSGELNKNRCGVLIGTAMGSMRALKDGIDAIKI 172
+ D ++ L++ +A +GIT+ ++ ++ + G G+ MG + AL+ G+ +
Sbjct: 1207 QVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALR-GMFKDRF 1265
Query: 173 SYKKMSPFSVPYSMTSMASAIIAMDL-EWMGPNYAISSACATSNCCILTAANHIIKGDAD 231
+ + + S + SA + M L GP ACATS + I+ G A
Sbjct: 1266 KDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKAR 1325
Query: 232 LMLCGGSDGVIIPEGIAGF----IACNNLSR--RNSDPTKASRPWDSDRDGFVMGEGAGV 285
+ + GG D EG F N L P + SRP + R+GF+ +GAG+
Sbjct: 1326 ICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGI 1384
Query: 286 ILLEELEHAKRRGAEIY 302
++ + + A + G IY
Sbjct: 1385 QIIMQADLALKMGVPIY 1401
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 328 VACMEKALTNSGVSREDVNYINAHATSTRVGDPRE---FKAVMHCFGQ---NPELRMNST 381
+A + AL G++ +D+ + H TST+ D E +M G+ NP + +
Sbjct: 1519 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQ- 1577
Query: 382 KSMTGHLLGAAGAVEAIATVKAIQTGWIHPNINLENPDK 420
K +TGH GAAGA ++ + +G I N N +N DK
Sbjct: 1578 KFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDK 1616
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 279 MGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNS 338
+ +GA ++L + A +RG A + S E + G+G + +++A+T +
Sbjct: 254 INDGAAAVVLMKKSEADKRGLTPLARIVSWSQV-----GVEPSIMGIGPIPAIKQAVTKA 308
Query: 339 GVSREDVNYINAHATSTRVGDPREFKAVMHCFGQNPE-LRMNSTKSMTGHLLGAAG 393
G S EDV+ + V A++ G NPE + + GH LGA+G
Sbjct: 309 GWSLEDVDIFEINEAFAAVS-----AAIVKELGLNPEKVNIEGGAIALGHPLGASG 359
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 279 MGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYHKSESRLDGLGAVACMEKALTNS 338
+ +GA +LL ++AK G A A R+ G+G V KAL +
Sbjct: 255 LNDGAAAVLLVSDDYAKAHGLRPLARV-----RAIAVAGVPPRIMGIGPVPATRKALERA 309
Query: 339 GVSREDVNYI--NAHATSTRVGDPREFKAVMHCFGQNPELRMNSTKSMTGHLLGAAGA 394
G+S D+ I N + + RE+ M NP N GH LGA+GA
Sbjct: 310 GLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNP----NGGAIALGHPLGASGA 363
>pdb|1T47|A Chain A, Structure Of Fe2-Hppd Bound To Ntbc
pdb|1T47|B Chain B, Structure Of Fe2-Hppd Bound To Ntbc
Length = 381
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 265 KASRPWDSDRDGFVMGEGAGVILLEELEHAKRRGAEIYAEFMGGSFTCDAYH-KSESRLD 323
K + PW V G GV+ L +E R A YA G + Y K E
Sbjct: 80 KPATPWGHFLADHVAEHGDGVVDLA-IEVPDARAAHAYAIEHGARSVAEPYELKDEHGTV 138
Query: 324 GLGAVACMEKALTNSGVSRE--DVNYINAHATSTRVGDP---REFKAVMHCFGQNPEL-R 377
L A+A K ++ V R D Y+ + + + +P R F+A+ HC G N EL R
Sbjct: 139 VLAAIATYGKT-RHTLVDRTGYDGPYLPGYVAAAPIVEPPAHRTFQAIDHCVG-NVELGR 196
Query: 378 MNSTKSMTGHLLG 390
MN ++G
Sbjct: 197 MNEWVGFYNKVMG 209
>pdb|3M7V|A Chain A, Crystal Structure Of Phosphopentomutase From Streptococcus
M
pdb|3M7V|B Chain B, Crystal Structure Of Phosphopentomutase From Streptococcus
M
Length = 413
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 110 PKHAKRADNYLIYALIAGK----KALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKD 165
P++ R N YAL LADAG++ G++N G I MG ++
Sbjct: 214 PRNFTRTANRHDYALSPFAPTVLNKLADAGVSTYAVGKINDIFNGSGITNDMGHNKSNSH 273
Query: 166 GIDAIKISYKKMSPFSVPYSMTSM 189
G+D + I +S F+ +S T++
Sbjct: 274 GVDTL-IKTMGLSAFTKGFSFTNL 296
>pdb|1V75|A Chain A, Crystal Structure Of Hemoglobin D From The Aldabra Giant
Tortoise (Geochelone Gigantea) At 2.0 A Resolution
pdb|1WMU|A Chain A, Crystal Structure Of Hemoglobin D From The Aldabra Giant
Tortoise, Geochelone Gigantea, At 1.65 A Resolution
pdb|2Z6N|A Chain A, Crystal Structure Of Carbonmonoxy Hemoglobin D From The
Aldabra Giant Tortoise, Geochelone Gigantea
Length = 141
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 313 DAYHKSES-RLDG---LGAVACMEKALTNSGVSREDVNYINAHATSTRVGDPREFKAVMH 368
D +H SE R G +GA+ K + N + +++ N HA + RV DP FK + H
Sbjct: 47 DLHHDSEQIRHHGKKVVGALGDAVKHIDNLSATLSELS--NLHAYNLRV-DPVNFKLLSH 103
Query: 369 CF 370
CF
Sbjct: 104 CF 105
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 203 PNYAISSACATSNCCILTAANHIIKGDADLMLCGGSD 239
P+Y ++ C + + AA I G+ D+++ GG++
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTE 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,447,221
Number of Sequences: 62578
Number of extensions: 500479
Number of successful extensions: 1436
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 66
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)