Query 044827
Match_columns 237
No_of_seqs 202 out of 2949
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 3.6E-25 7.9E-30 205.9 19.9 227 3-237 17-269 (889)
2 COG1116 TauB ABC-type nitrate/ 99.7 9.7E-17 2.1E-21 127.3 5.7 109 129-237 11-156 (248)
3 PF00931 NB-ARC: NB-ARC domain 99.6 4.1E-15 8.9E-20 123.7 10.8 104 133-237 1-109 (287)
4 COG1126 GlnQ ABC-type polar am 99.6 6.1E-16 1.3E-20 119.8 4.8 110 128-237 9-162 (240)
5 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 1.4E-15 3E-20 122.1 5.9 106 130-237 13-165 (254)
6 COG1136 SalX ABC-type antimicr 99.6 4E-15 8.8E-20 117.7 5.1 103 135-237 19-168 (226)
7 COG1120 FepC ABC-type cobalami 99.6 5.3E-15 1.1E-19 119.3 5.7 109 129-237 10-164 (258)
8 COG1124 DppF ABC-type dipeptid 99.5 4.3E-14 9.4E-19 111.5 8.6 108 130-237 12-167 (252)
9 COG3842 PotA ABC-type spermidi 99.5 1.2E-14 2.6E-19 122.2 3.4 110 128-237 12-162 (352)
10 COG0411 LivG ABC-type branched 99.5 1.2E-14 2.6E-19 114.8 1.3 110 128-237 11-175 (250)
11 COG0488 Uup ATPase components 99.5 2.9E-13 6.3E-18 120.3 9.7 104 134-237 335-465 (530)
12 COG3839 MalK ABC-type sugar tr 99.4 1.4E-13 3.1E-18 115.1 6.7 109 129-237 11-159 (338)
13 COG1119 ModF ABC-type molybden 99.4 1.6E-13 3.4E-18 108.5 6.3 111 127-237 37-197 (257)
14 COG1131 CcmA ABC-type multidru 99.4 8.5E-14 1.8E-18 116.0 4.8 110 128-237 11-162 (293)
15 COG2884 FtsE Predicted ATPase 99.4 4.2E-13 9E-18 102.1 7.9 104 134-237 15-163 (223)
16 COG0410 LivF ABC-type branched 99.4 8.6E-14 1.9E-18 109.1 4.1 110 128-237 10-162 (237)
17 COG4608 AppF ABC-type oligopep 99.4 1.8E-13 3.9E-18 110.1 6.0 102 135-237 27-135 (268)
18 COG1125 OpuBA ABC-type proline 99.4 1.3E-13 2.8E-18 109.4 4.4 110 128-237 8-161 (309)
19 cd03259 ABC_Carb_Solutes_like 99.4 5.6E-13 1.2E-17 106.3 7.2 107 131-237 10-156 (213)
20 COG4133 CcmA ABC-type transpor 99.4 1.6E-13 3.4E-18 104.2 3.8 106 132-237 13-156 (209)
21 TIGR01188 drrA daunorubicin re 99.4 1.8E-13 3.9E-18 114.8 4.2 107 131-237 3-150 (302)
22 COG4525 TauB ABC-type taurine 99.4 5.9E-13 1.3E-17 101.9 6.4 103 135-237 19-158 (259)
23 cd03225 ABC_cobalt_CbiO_domain 99.4 3E-13 6.4E-18 107.7 4.8 104 134-237 14-160 (211)
24 cd03226 ABC_cobalt_CbiO_domain 99.4 1.1E-12 2.4E-17 104.0 7.8 104 134-237 13-152 (205)
25 COG4619 ABC-type uncharacteriz 99.4 7.8E-13 1.7E-17 98.8 6.2 106 132-237 14-159 (223)
26 COG4555 NatA ABC-type Na+ tran 99.4 5.7E-13 1.2E-17 102.4 5.5 104 134-237 15-159 (245)
27 cd03265 ABC_DrrA DrrA is the A 99.4 7.5E-13 1.6E-17 106.1 6.3 107 131-237 10-157 (220)
28 TIGR01166 cbiO cobalt transpor 99.4 1.5E-12 3.3E-17 102.0 7.7 106 132-237 3-153 (190)
29 COG1135 AbcC ABC-type metal io 99.4 5.8E-13 1.3E-17 108.5 5.4 104 134-237 19-167 (339)
30 cd03235 ABC_Metallic_Cations A 99.4 9.3E-13 2E-17 105.0 6.5 105 131-237 9-158 (213)
31 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 9.3E-13 2E-17 105.3 6.5 104 134-237 17-166 (218)
32 cd03293 ABC_NrtD_SsuB_transpor 99.4 9.4E-13 2E-17 105.5 6.5 104 134-237 17-157 (220)
33 PRK10636 putative ABC transpor 99.4 2.7E-12 5.8E-17 117.8 10.2 108 130-237 321-456 (638)
34 COG4107 PhnK ABC-type phosphon 99.4 2.8E-12 6.1E-17 96.5 8.4 111 127-237 12-177 (258)
35 cd03222 ABC_RNaseL_inhibitor T 99.4 6.4E-13 1.4E-17 102.6 5.1 87 130-237 9-97 (177)
36 PRK11247 ssuB aliphatic sulfon 99.4 1.8E-12 3.8E-17 106.3 7.8 105 131-237 22-159 (257)
37 COG1127 Ttg2A ABC-type transpo 99.4 8.5E-13 1.9E-17 104.0 5.5 109 129-237 16-171 (263)
38 COG3638 ABC-type phosphate/pho 99.4 1.9E-13 4.1E-18 107.4 1.8 109 129-237 11-173 (258)
39 TIGR02673 FtsE cell division A 99.4 7.7E-13 1.7E-17 105.5 5.3 104 134-237 15-163 (214)
40 TIGR00960 3a0501s02 Type II (G 99.4 7.9E-13 1.7E-17 105.6 5.2 103 135-237 17-164 (216)
41 COG3845 ABC-type uncharacteriz 99.4 7.4E-13 1.6E-17 113.8 5.2 110 128-237 11-166 (501)
42 cd03261 ABC_Org_Solvent_Resist 99.4 1.5E-12 3.2E-17 105.4 6.8 107 131-237 10-162 (235)
43 PRK13543 cytochrome c biogenes 99.4 2E-12 4.4E-17 103.2 7.4 105 131-237 21-163 (214)
44 cd03301 ABC_MalK_N The N-termi 99.4 1.8E-12 3.8E-17 103.4 7.0 107 131-237 10-156 (213)
45 PRK13537 nodulation ABC transp 99.4 1.9E-12 4.2E-17 108.7 7.5 108 130-237 16-164 (306)
46 PRK11248 tauB taurine transpor 99.3 1.9E-12 4.1E-17 106.1 7.1 107 131-237 11-154 (255)
47 PRK13536 nodulation factor exp 99.3 1.6E-12 3.4E-17 110.6 6.7 108 130-237 50-198 (340)
48 PRK11650 ugpC glycerol-3-phosp 99.3 1.2E-12 2.5E-17 112.0 6.0 106 132-237 15-160 (356)
49 cd03294 ABC_Pro_Gly_Bertaine T 99.3 2E-12 4.3E-17 106.8 6.9 107 131-237 34-186 (269)
50 PRK13538 cytochrome c biogenes 99.3 6.1E-13 1.3E-17 105.4 3.6 107 131-237 11-155 (204)
51 TIGR01288 nodI ATP-binding ABC 99.3 2.1E-12 4.5E-17 108.4 6.9 107 131-237 14-161 (303)
52 cd03263 ABC_subfamily_A The AB 99.3 2.2E-12 4.7E-17 103.4 6.8 104 134-237 15-159 (220)
53 TIGR02315 ABC_phnC phosphonate 99.3 1.4E-12 3E-17 106.0 5.7 105 133-237 14-171 (243)
54 TIGR03608 L_ocin_972_ABC putat 99.3 8.2E-13 1.8E-17 104.7 4.2 107 131-237 8-160 (206)
55 cd03269 ABC_putative_ATPase Th 99.3 1.2E-12 2.5E-17 104.2 5.1 106 132-237 11-154 (210)
56 COG1118 CysA ABC-type sulfate/ 99.3 2.4E-12 5.2E-17 104.8 6.9 109 129-237 10-163 (345)
57 cd03214 ABC_Iron-Siderophores_ 99.3 1.4E-12 3.1E-17 101.3 5.4 104 132-237 10-123 (180)
58 cd03231 ABC_CcmA_heme_exporter 99.3 8.8E-13 1.9E-17 104.3 4.2 105 131-237 10-151 (201)
59 cd03266 ABC_NatA_sodium_export 99.3 8.7E-13 1.9E-17 105.5 4.2 103 135-237 19-162 (218)
60 COG0488 Uup ATPase components 99.3 2.1E-12 4.7E-17 114.8 7.1 110 128-237 10-179 (530)
61 cd03218 ABC_YhbG The ABC trans 99.3 3E-12 6.5E-17 103.4 7.3 107 131-237 10-159 (232)
62 COG4559 ABC-type hemin transpo 99.3 2.7E-12 5.8E-17 99.4 6.6 107 131-237 11-167 (259)
63 PRK10247 putative ABC transpor 99.3 1.7E-12 3.6E-17 104.5 5.7 107 131-237 17-163 (225)
64 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 8.9E-13 1.9E-17 98.7 3.8 80 135-237 14-96 (144)
65 TIGR01189 ccmA heme ABC export 99.3 2.3E-12 5E-17 101.6 6.3 107 131-237 10-153 (198)
66 COG3840 ThiQ ABC-type thiamine 99.3 4.8E-12 1E-16 95.8 7.5 94 144-237 22-155 (231)
67 COG1117 PstB ABC-type phosphat 99.3 1E-12 2.2E-17 101.9 3.9 110 128-237 14-175 (253)
68 cd03223 ABCD_peroxisomal_ALDP 99.3 3.6E-12 7.8E-17 97.7 7.0 98 135-237 15-117 (166)
69 PRK11432 fbpC ferric transport 99.3 2.2E-12 4.8E-17 110.0 6.4 108 130-237 15-162 (351)
70 COG4152 ABC-type uncharacteriz 99.3 7.4E-13 1.6E-17 104.5 3.1 110 128-237 9-156 (300)
71 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 2.8E-12 6.1E-17 103.9 6.5 106 132-237 12-158 (236)
72 cd03267 ABC_NatA_like Similar 99.3 3.7E-12 8E-17 103.2 7.1 107 131-237 31-179 (236)
73 cd03256 ABC_PhnC_transporter A 99.3 1.6E-12 3.4E-17 105.6 4.9 104 134-237 14-170 (241)
74 TIGR03265 PhnT2 putative 2-ami 99.3 2.1E-12 4.5E-17 110.3 5.9 107 131-237 14-160 (353)
75 cd03296 ABC_CysA_sulfate_impor 99.3 1.3E-12 2.7E-17 106.1 4.2 107 131-237 12-162 (239)
76 TIGR03258 PhnT 2-aminoethylpho 99.3 2.6E-12 5.7E-17 110.0 6.3 107 131-237 15-163 (362)
77 TIGR03522 GldA_ABC_ATP gliding 99.3 6.7E-13 1.4E-17 111.3 2.6 107 131-237 12-159 (301)
78 cd03219 ABC_Mj1267_LivG_branch 99.3 1.4E-12 3.1E-17 105.6 4.4 105 131-237 10-169 (236)
79 cd03268 ABC_BcrA_bacitracin_re 99.3 3E-12 6.6E-17 101.7 6.1 107 131-237 10-152 (208)
80 TIGR02211 LolD_lipo_ex lipopro 99.3 5E-12 1.1E-16 101.3 7.4 103 135-237 19-167 (221)
81 PRK11000 maltose/maltodextrin 99.3 3.7E-12 8E-17 109.5 7.1 107 131-237 13-159 (369)
82 cd03228 ABCC_MRP_Like The MRP 99.3 3.7E-12 8E-17 98.1 6.4 97 135-237 16-122 (171)
83 cd03264 ABC_drug_resistance_li 99.3 1.1E-12 2.4E-17 104.4 3.5 105 132-237 11-156 (211)
84 cd03258 ABC_MetN_methionine_tr 99.3 1.6E-12 3.6E-17 105.0 4.6 103 135-237 19-166 (233)
85 PRK14250 phosphate ABC transpo 99.3 7.5E-12 1.6E-16 101.7 8.2 107 131-237 13-157 (241)
86 TIGR02314 ABC_MetN D-methionin 99.3 1.9E-12 4.1E-17 110.0 4.8 103 135-237 19-166 (343)
87 TIGR01186 proV glycine betaine 99.3 2.6E-12 5.6E-17 109.9 5.5 107 131-237 3-155 (363)
88 PRK15064 ABC transporter ATP-b 99.3 4.5E-12 9.8E-17 114.2 7.3 105 131-237 11-181 (530)
89 PRK10575 iron-hydroxamate tran 99.3 2.1E-12 4.4E-17 106.5 4.6 107 131-237 21-173 (265)
90 PRK10908 cell division protein 99.3 1.9E-12 4.1E-17 103.9 4.2 103 135-237 16-163 (222)
91 TIGR01184 ntrCD nitrate transp 99.3 4E-12 8.7E-17 102.6 6.0 100 138-237 2-140 (230)
92 PRK09544 znuC high-affinity zi 99.3 3.5E-12 7.7E-17 104.2 5.7 107 131-237 14-146 (251)
93 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 1.4E-12 3.1E-17 104.8 3.3 108 130-237 31-168 (224)
94 cd03260 ABC_PstB_phosphate_tra 99.3 2.9E-12 6.2E-17 103.2 5.1 105 131-237 10-167 (227)
95 PRK11264 putative amino-acid A 99.3 7.2E-12 1.6E-16 102.3 7.5 107 131-237 13-170 (250)
96 PRK09452 potA putrescine/sperm 99.3 3.6E-12 7.9E-17 109.5 5.9 107 131-237 24-170 (375)
97 PRK15177 Vi polysaccharide exp 99.3 4.5E-12 9.9E-17 101.1 6.1 101 137-237 3-130 (213)
98 PRK11629 lolD lipoprotein tran 99.3 7.4E-12 1.6E-16 101.2 7.4 103 135-237 23-171 (233)
99 COG2274 SunT ABC-type bacterio 99.3 8.2E-12 1.8E-16 114.6 8.4 106 131-237 481-635 (709)
100 PRK09536 btuD corrinoid ABC tr 99.3 4.3E-12 9.3E-17 109.8 6.2 106 131-237 13-165 (402)
101 TIGR03740 galliderm_ABC gallid 99.3 4.9E-12 1.1E-16 101.6 6.1 104 134-237 13-150 (223)
102 cd03262 ABC_HisP_GlnQ_permease 99.3 2.5E-12 5.5E-17 102.4 4.4 107 131-237 10-161 (213)
103 cd03295 ABC_OpuCA_Osmoprotecti 99.3 2.3E-12 5.1E-17 104.7 4.3 104 134-237 14-161 (242)
104 cd03230 ABC_DR_subfamily_A Thi 99.3 4.8E-12 1E-16 97.7 5.7 92 135-237 14-121 (173)
105 PRK13638 cbiO cobalt transport 99.3 7.2E-12 1.6E-16 103.6 7.1 107 131-237 11-162 (271)
106 cd03229 ABC_Class3 This class 99.3 2.5E-12 5.5E-17 99.7 4.1 100 132-237 11-126 (178)
107 PRK10851 sulfate/thiosulfate t 99.3 1.6E-12 3.4E-17 111.1 3.1 107 131-237 12-162 (353)
108 cd03298 ABC_ThiQ_thiamine_tran 99.3 9.5E-12 2.1E-16 99.0 7.4 98 139-237 16-154 (211)
109 PRK11124 artP arginine transpo 99.3 5.4E-12 1.2E-16 102.6 6.0 107 131-237 12-167 (242)
110 PRK13539 cytochrome c biogenes 99.3 6.3E-12 1.4E-16 99.8 6.2 105 131-237 12-153 (207)
111 PF00005 ABC_tran: ABC transpo 99.3 1E-12 2.2E-17 97.4 1.5 96 140-237 4-134 (137)
112 COG4181 Predicted ABC-type tra 99.3 7.8E-12 1.7E-16 93.8 6.2 103 135-237 24-172 (228)
113 PRK10584 putative ABC transpor 99.3 1.1E-11 2.3E-16 99.9 7.6 102 136-237 25-172 (228)
114 cd03246 ABCC_Protease_Secretio 99.3 5.6E-12 1.2E-16 97.3 5.6 97 135-237 16-122 (173)
115 PRK11607 potG putrescine trans 99.3 5E-12 1.1E-16 108.8 5.9 107 131-237 29-175 (377)
116 PRK11231 fecE iron-dicitrate t 99.3 3.4E-12 7.3E-17 104.6 4.5 106 131-237 12-164 (255)
117 cd03224 ABC_TM1139_LivF_branch 99.3 2.2E-12 4.9E-17 103.4 3.4 107 131-237 10-158 (222)
118 cd03247 ABCC_cytochrome_bd The 99.3 7E-12 1.5E-16 97.2 6.1 96 135-237 16-124 (178)
119 PRK13647 cbiO cobalt transport 99.3 3.6E-12 7.8E-17 105.5 4.7 103 135-237 19-164 (274)
120 cd03238 ABC_UvrA The excision 99.3 1.2E-11 2.5E-16 95.5 7.3 92 134-237 8-115 (176)
121 PRK13540 cytochrome c biogenes 99.3 1.1E-11 2.4E-16 97.9 7.3 107 131-237 11-153 (200)
122 PRK13548 hmuV hemin importer A 99.3 7.5E-12 1.6E-16 102.7 6.6 107 131-237 12-166 (258)
123 PRK13650 cbiO cobalt transport 99.3 3.7E-12 8.1E-17 105.7 4.8 103 135-237 21-166 (279)
124 PRK11701 phnK phosphonate C-P 99.3 1.2E-11 2.5E-16 101.6 7.6 107 131-237 16-177 (258)
125 PRK10418 nikD nickel transport 99.3 2E-11 4.3E-16 100.0 8.9 103 135-237 17-166 (254)
126 cd03216 ABC_Carb_Monos_I This 99.3 5.5E-12 1.2E-16 96.4 5.3 96 134-237 13-108 (163)
127 PRK10895 lipopolysaccharide AB 99.3 4.8E-12 1E-16 102.8 5.2 106 131-237 13-163 (241)
128 PRK11153 metN DL-methionine tr 99.3 6.5E-12 1.4E-16 107.1 6.2 103 135-237 19-166 (343)
129 PRK10636 putative ABC transpor 99.3 9.6E-12 2.1E-16 114.2 7.8 108 130-237 10-175 (638)
130 TIGR03411 urea_trans_UrtD urea 99.3 3.4E-12 7.4E-17 103.7 4.3 106 131-237 12-169 (242)
131 PRK15439 autoinducer 2 ABC tra 99.3 7.6E-12 1.6E-16 112.2 6.9 108 130-237 20-166 (510)
132 cd03292 ABC_FtsE_transporter F 99.3 1.3E-11 2.8E-16 98.5 7.3 103 135-237 15-162 (214)
133 TIGR01978 sufC FeS assembly AT 99.3 1.5E-11 3.3E-16 99.9 7.6 107 131-237 10-170 (243)
134 PRK10938 putative molybdenum t 99.3 8E-12 1.7E-16 111.6 6.5 107 131-237 13-161 (490)
135 TIGR02323 CP_lyasePhnK phospho 99.3 1.7E-11 3.7E-16 100.3 7.9 107 131-237 13-174 (253)
136 PRK09493 glnQ glutamine ABC tr 99.3 3.5E-12 7.6E-17 103.6 3.8 107 131-237 11-162 (240)
137 PRK10619 histidine/lysine/argi 99.3 8.3E-12 1.8E-16 102.4 6.0 107 131-237 15-178 (257)
138 PRK15112 antimicrobial peptide 99.3 1.7E-11 3.7E-16 101.1 7.8 103 135-237 27-175 (267)
139 PRK13644 cbiO cobalt transport 99.3 5.2E-12 1.1E-16 104.5 4.8 103 135-237 16-162 (274)
140 cd03245 ABCC_bacteriocin_expor 99.3 4.7E-12 1E-16 101.4 4.3 103 135-237 18-166 (220)
141 TIGR00972 3a0107s01c2 phosphat 99.3 1.7E-11 3.7E-16 99.9 7.7 107 131-237 11-170 (247)
142 PRK14242 phosphate transporter 99.3 1.4E-11 3E-16 100.8 7.2 107 131-237 16-175 (253)
143 PRK11300 livG leucine/isoleuci 99.3 8.1E-12 1.8E-16 102.3 5.7 107 131-237 15-179 (255)
144 COG1123 ATPase components of v 99.3 8.9E-12 1.9E-16 109.6 6.3 104 134-237 304-455 (539)
145 TIGR03410 urea_trans_UrtE urea 99.3 1.5E-11 3.2E-16 99.3 7.1 107 131-237 10-157 (230)
146 PRK10253 iron-enterobactin tra 99.2 5.8E-12 1.3E-16 103.8 4.8 107 131-237 17-169 (265)
147 PRK11147 ABC transporter ATPas 99.2 1.4E-11 3E-16 113.3 7.7 108 130-237 12-182 (635)
148 PRK13632 cbiO cobalt transport 99.2 6.5E-12 1.4E-16 103.8 5.0 101 135-237 23-168 (271)
149 TIGR02770 nickel_nikD nickel i 99.2 3E-11 6.5E-16 97.5 8.8 101 137-237 2-151 (230)
150 PRK13637 cbiO cobalt transport 99.2 1.7E-11 3.7E-16 102.1 7.5 103 135-237 21-170 (287)
151 PRK15056 manganese/iron transp 99.2 1.6E-11 3.6E-16 101.5 7.4 103 135-237 21-168 (272)
152 PRK13635 cbiO cobalt transport 99.2 7.6E-12 1.6E-16 103.8 5.3 103 135-237 21-166 (279)
153 PRK10762 D-ribose transporter 99.2 6E-12 1.3E-16 112.7 5.0 107 131-237 14-167 (501)
154 cd03217 ABC_FeS_Assembly ABC-t 99.2 1.2E-11 2.5E-16 97.8 6.0 101 132-237 11-130 (200)
155 PRK14247 phosphate ABC transpo 99.2 1.1E-11 2.3E-16 101.3 6.0 107 131-237 13-172 (250)
156 TIGR03873 F420-0_ABC_ATP propo 99.2 4.3E-12 9.4E-17 104.0 3.7 106 131-237 11-163 (256)
157 PRK10070 glycine betaine trans 99.2 9.1E-12 2E-16 107.7 5.8 107 131-237 38-190 (400)
158 TIGR02324 CP_lyasePhnL phospho 99.2 3.3E-11 7.1E-16 96.8 8.6 103 135-237 22-175 (224)
159 COG1137 YhbG ABC-type (unclass 99.2 9.5E-13 2.1E-17 101.0 -0.4 109 129-237 12-165 (243)
160 PRK11831 putative ABC transpor 99.2 1.1E-11 2.3E-16 102.4 5.8 107 131-237 17-169 (269)
161 PRK11819 putative ABC transpor 99.2 1.7E-11 3.6E-16 111.1 7.6 108 130-237 15-189 (556)
162 PRK15064 ABC transporter ATP-b 99.2 1.6E-11 3.5E-16 110.6 7.4 107 131-237 329-464 (530)
163 COG1129 MglA ABC-type sugar tr 99.2 1E-11 2.2E-16 108.4 5.9 111 127-237 14-171 (500)
164 cd03257 ABC_NikE_OppD_transpor 99.2 1.2E-11 2.5E-16 99.6 5.8 103 135-237 19-171 (228)
165 COG1122 CbiO ABC-type cobalt t 99.2 1.5E-11 3.2E-16 98.9 6.3 104 134-237 17-164 (235)
166 cd03300 ABC_PotA_N PotA is an 99.2 2.4E-11 5.3E-16 98.1 7.6 105 132-237 11-156 (232)
167 cd03290 ABCC_SUR1_N The SUR do 99.2 3.2E-11 6.9E-16 96.5 8.2 103 135-237 15-166 (218)
168 PRK13651 cobalt transporter AT 99.2 2.6E-11 5.7E-16 101.7 7.9 103 135-237 21-191 (305)
169 cd03297 ABC_ModC_molybdenum_tr 99.2 2.1E-11 4.6E-16 97.2 7.0 104 131-237 10-157 (214)
170 COG4167 SapF ABC-type antimicr 99.2 2E-11 4.2E-16 92.7 6.3 107 130-237 20-175 (267)
171 PRK13652 cbiO cobalt transport 99.2 8E-12 1.7E-16 103.6 4.5 103 135-237 18-163 (277)
172 TIGR02868 CydC thiol reductant 99.2 2E-11 4.3E-16 110.0 7.4 104 134-237 348-496 (529)
173 cd03233 ABC_PDR_domain1 The pl 99.2 1.1E-11 2.5E-16 98.0 5.2 103 135-237 21-144 (202)
174 TIGR03005 ectoine_ehuA ectoine 99.2 2.1E-11 4.5E-16 99.7 6.9 107 131-237 10-172 (252)
175 PRK09700 D-allose transporter 99.2 8.9E-12 1.9E-16 111.8 5.1 108 130-237 14-171 (510)
176 PRK13641 cbiO cobalt transport 99.2 2.9E-11 6.2E-16 100.8 7.8 103 135-237 21-171 (287)
177 KOG0927 Predicted transporter 99.2 4.9E-11 1.1E-15 103.6 9.3 103 135-237 404-535 (614)
178 cd03250 ABCC_MRP_domain1 Domai 99.2 4.5E-11 9.8E-16 94.7 8.5 100 135-237 19-153 (204)
179 PRK11308 dppF dipeptide transp 99.2 2.1E-11 4.5E-16 103.2 7.0 103 135-237 29-180 (327)
180 cd03215 ABC_Carb_Monos_II This 99.2 2E-11 4.2E-16 95.0 6.3 95 136-237 15-130 (182)
181 cd03237 ABC_RNaseL_inhibitor_d 99.2 5.9E-11 1.3E-15 96.6 9.3 94 144-237 22-141 (246)
182 TIGR01277 thiQ thiamine ABC tr 99.2 3.5E-11 7.5E-16 96.0 7.8 101 137-237 14-154 (213)
183 PRK10771 thiQ thiamine transpo 99.2 3.5E-11 7.6E-16 97.2 7.8 98 139-237 17-155 (232)
184 cd03244 ABCC_MRP_domain2 Domai 99.2 2E-11 4.2E-16 97.9 6.2 102 135-237 18-165 (221)
185 PRK11147 ABC transporter ATPas 99.2 1.7E-11 3.8E-16 112.6 6.5 107 131-237 329-466 (635)
186 PRK13648 cbiO cobalt transport 99.2 1.5E-11 3.2E-16 101.6 5.5 100 136-237 24-168 (269)
187 PRK13634 cbiO cobalt transport 99.2 2.5E-11 5.5E-16 101.2 6.9 103 135-237 21-171 (290)
188 cd03236 ABC_RNaseL_inhibitor_d 99.2 5.5E-11 1.2E-15 97.3 8.8 106 131-237 10-165 (255)
189 PRK14241 phosphate transporter 99.2 2.9E-11 6.2E-16 99.3 7.1 107 131-237 14-174 (258)
190 PRK14273 phosphate ABC transpo 99.2 1.8E-11 3.9E-16 100.2 5.9 107 131-237 17-176 (254)
191 PRK13636 cbiO cobalt transport 99.2 1.5E-11 3.2E-16 102.3 5.4 104 134-237 19-167 (283)
192 PRK09580 sufC cysteine desulfu 99.2 3.4E-11 7.3E-16 98.2 7.3 106 132-237 12-171 (248)
193 TIGR03415 ABC_choXWV_ATP choli 99.2 1.6E-11 3.5E-16 105.5 5.7 107 131-237 34-190 (382)
194 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 3.9E-11 8.4E-16 108.7 8.3 49 131-179 14-63 (552)
195 PRK11144 modC molybdate transp 99.2 4E-11 8.6E-16 102.6 7.9 99 139-237 16-154 (352)
196 PRK13639 cbiO cobalt transport 99.2 3.2E-11 6.9E-16 99.9 7.0 103 135-237 16-163 (275)
197 PRK13541 cytochrome c biogenes 99.2 3.9E-11 8.5E-16 94.3 7.2 98 140-237 19-149 (195)
198 PRK13646 cbiO cobalt transport 99.2 3.7E-11 7.9E-16 100.1 7.4 103 135-237 21-171 (286)
199 PRK13409 putative ATPase RIL; 99.2 3.9E-11 8.4E-16 109.0 8.1 101 137-237 355-479 (590)
200 cd03254 ABCC_Glucan_exporter_l 99.2 1.8E-11 3.9E-16 98.6 5.3 102 135-237 17-165 (229)
201 TIGR02769 nickel_nikE nickel i 99.2 3.8E-11 8.1E-16 99.0 7.3 101 135-237 25-176 (265)
202 TIGR02142 modC_ABC molybdenum 99.2 3.9E-11 8.5E-16 102.8 7.6 99 139-237 15-157 (354)
203 PRK14254 phosphate ABC transpo 99.2 2.9E-11 6.3E-16 100.6 6.6 107 131-237 49-206 (285)
204 PRK14259 phosphate ABC transpo 99.2 4.1E-11 8.8E-16 98.9 7.3 107 131-237 23-180 (269)
205 TIGR00968 3a0106s01 sulfate AB 99.2 1.3E-11 2.9E-16 100.0 4.3 106 132-237 11-156 (237)
206 PRK15079 oligopeptide ABC tran 99.2 1.3E-11 2.7E-16 104.7 4.3 103 135-237 35-187 (331)
207 cd03369 ABCC_NFT1 Domain 2 of 99.2 6.3E-11 1.4E-15 94.0 8.0 103 135-237 22-151 (207)
208 PRK15093 antimicrobial peptide 99.2 1.5E-11 3.2E-16 104.4 4.7 104 134-237 20-184 (330)
209 PRK14264 phosphate ABC transpo 99.2 4E-11 8.7E-16 100.7 7.2 107 131-237 55-226 (305)
210 COG4175 ProV ABC-type proline/ 99.2 2.7E-11 5.8E-16 99.1 5.9 101 137-237 44-190 (386)
211 PRK13633 cobalt transporter AT 99.2 1.8E-11 3.9E-16 101.6 5.1 102 135-237 24-170 (280)
212 PRK10744 pstB phosphate transp 99.2 2.2E-11 4.9E-16 100.0 5.5 107 131-237 23-182 (260)
213 PRK13649 cbiO cobalt transport 99.2 4.9E-11 1.1E-15 99.0 7.5 101 135-237 21-171 (280)
214 PRK13409 putative ATPase RIL; 99.2 3.2E-11 6.8E-16 109.6 6.8 108 129-237 81-238 (590)
215 TIGR03771 anch_rpt_ABC anchore 99.2 1.8E-10 3.9E-15 92.5 10.4 93 143-237 2-139 (223)
216 TIGR03269 met_CoM_red_A2 methy 99.2 4.3E-11 9.3E-16 107.7 7.4 107 131-237 10-194 (520)
217 PRK13640 cbiO cobalt transport 99.2 2E-11 4.3E-16 101.5 4.9 101 135-237 21-169 (282)
218 PRK11819 putative ABC transpor 99.2 2.7E-11 5.8E-16 109.8 6.1 107 131-237 334-471 (556)
219 PRK11022 dppD dipeptide transp 99.2 5E-11 1.1E-15 101.0 7.3 103 135-237 21-179 (326)
220 cd03252 ABCC_Hemolysin The ABC 99.2 2.1E-11 4.7E-16 98.7 4.9 103 135-237 16-164 (237)
221 cd03251 ABCC_MsbA MsbA is an e 99.2 2.4E-11 5.3E-16 98.2 5.1 102 135-237 16-164 (234)
222 PRK14275 phosphate ABC transpo 99.2 4.4E-11 9.6E-16 99.6 6.8 107 131-237 49-208 (286)
223 PRK13631 cbiO cobalt transport 99.2 6.6E-11 1.4E-15 99.9 7.9 103 135-237 40-202 (320)
224 PRK14269 phosphate ABC transpo 99.2 2.3E-11 5E-16 99.1 5.0 106 131-237 12-168 (246)
225 PRK13546 teichoic acids export 99.2 5.5E-11 1.2E-15 97.8 7.2 103 135-237 38-169 (264)
226 PRK13643 cbiO cobalt transport 99.2 5.5E-11 1.2E-15 99.1 7.3 103 135-237 20-170 (288)
227 PRK13549 xylose transporter AT 99.2 3.1E-11 6.7E-16 108.2 6.1 106 130-237 14-169 (506)
228 CHL00131 ycf16 sulfate ABC tra 99.2 7.7E-11 1.7E-15 96.4 8.0 107 131-237 17-177 (252)
229 PRK11614 livF leucine/isoleuci 99.2 1.1E-11 2.4E-16 100.5 2.9 107 131-237 15-163 (237)
230 cd03213 ABCG_EPDR ABCG transpo 99.2 4E-11 8.6E-16 94.3 6.0 100 134-237 22-137 (194)
231 PRK10419 nikE nickel transport 99.2 7.3E-11 1.6E-15 97.4 7.8 103 135-237 26-177 (268)
232 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 3E-11 6.6E-16 109.3 6.0 105 131-237 332-469 (552)
233 PRK14248 phosphate ABC transpo 99.2 2.5E-11 5.5E-16 100.1 5.0 108 130-237 30-190 (268)
234 PRK13645 cbiO cobalt transport 99.2 7.8E-11 1.7E-15 98.3 8.0 102 136-237 26-176 (289)
235 PRK10522 multidrug transporter 99.2 6.4E-11 1.4E-15 107.2 8.0 104 134-237 336-475 (547)
236 COG4987 CydC ABC-type transpor 99.2 1.2E-10 2.6E-15 101.3 9.1 103 135-237 352-500 (573)
237 PRK11288 araG L-arabinose tran 99.2 1.9E-11 4.2E-16 109.4 4.5 105 131-237 14-166 (501)
238 COG1134 TagH ABC-type polysacc 99.2 4.5E-11 9.6E-16 94.7 6.0 106 132-237 38-173 (249)
239 PRK09473 oppD oligopeptide tra 99.2 3.8E-11 8.3E-16 101.8 6.1 104 134-237 29-187 (330)
240 TIGR03269 met_CoM_red_A2 methy 99.2 4.8E-11 1E-15 107.4 6.9 103 135-237 298-453 (520)
241 PRK14267 phosphate ABC transpo 99.2 2.7E-11 5.8E-16 99.1 4.8 107 131-237 14-175 (253)
242 PRK10982 galactose/methyl gala 99.2 3.3E-11 7.2E-16 107.6 5.8 105 131-237 8-160 (491)
243 COG4618 ArpD ABC-type protease 99.2 5.9E-11 1.3E-15 102.5 7.0 104 134-237 349-498 (580)
244 TIGR02982 heterocyst_DevA ABC 99.2 5.3E-11 1.1E-15 95.4 6.3 104 134-237 18-167 (220)
245 PRK14235 phosphate transporter 99.2 2.4E-11 5.2E-16 100.2 4.4 107 131-237 29-189 (267)
246 cd03248 ABCC_TAP TAP, the Tran 99.2 7.3E-11 1.6E-15 94.9 7.0 102 135-237 28-176 (226)
247 COG4586 ABC-type uncharacteriz 99.2 9.6E-11 2.1E-15 94.1 7.5 103 135-237 38-182 (325)
248 PRK09984 phosphonate/organopho 99.2 2.4E-11 5.2E-16 100.0 4.3 105 131-237 14-178 (262)
249 KOG0058 Peptide exporter, ABC 99.2 6.5E-11 1.4E-15 106.2 7.2 104 134-237 481-630 (716)
250 COG4148 ModC ABC-type molybdat 99.2 6.8E-11 1.5E-15 95.3 6.6 93 145-237 22-154 (352)
251 cd03299 ABC_ModC_like Archeal 99.2 6.9E-11 1.5E-15 95.7 6.7 102 136-237 14-155 (235)
252 PLN03073 ABC transporter F fam 99.2 9.2E-11 2E-15 108.6 8.4 103 135-237 523-653 (718)
253 PRK14263 phosphate ABC transpo 99.2 2.1E-11 4.6E-16 100.2 3.7 109 129-237 16-175 (261)
254 PRK15439 autoinducer 2 ABC tra 99.2 8.7E-11 1.9E-15 105.4 8.0 102 136-237 278-429 (510)
255 TIGR02633 xylG D-xylose ABC tr 99.2 5.5E-11 1.2E-15 106.5 6.5 105 131-237 11-167 (500)
256 PRK14251 phosphate ABC transpo 99.2 3.5E-11 7.6E-16 98.3 4.8 107 131-237 14-173 (251)
257 PRK11160 cysteine/glutathione 99.2 3.2E-11 6.9E-16 109.7 5.0 103 135-237 354-501 (574)
258 PRK14246 phosphate ABC transpo 99.2 4.6E-11 1E-15 98.0 5.5 108 130-237 19-179 (257)
259 PRK14268 phosphate ABC transpo 99.2 1E-10 2.2E-15 96.0 7.5 107 131-237 22-180 (258)
260 PRK14265 phosphate ABC transpo 99.2 3.1E-11 6.8E-16 99.9 4.5 107 131-237 30-187 (274)
261 PRK13642 cbiO cobalt transport 99.2 3.3E-11 7E-16 100.0 4.6 101 136-237 22-166 (277)
262 TIGR03797 NHPM_micro_ABC2 NHPM 99.1 3.2E-11 6.8E-16 112.0 4.9 104 134-237 466-614 (686)
263 PRK10261 glutathione transport 99.1 5.5E-11 1.2E-15 109.0 6.4 103 135-237 30-194 (623)
264 PRK14237 phosphate transporter 99.1 4.3E-11 9.4E-16 98.7 5.1 107 131-237 30-189 (267)
265 PRK13547 hmuV hemin importer A 99.1 3.3E-11 7.2E-16 99.6 4.4 107 131-237 11-180 (272)
266 PRK15134 microcin C ABC transp 99.1 9.3E-11 2E-15 105.7 7.5 103 135-237 23-182 (529)
267 COG4598 HisP ABC-type histidin 99.1 4.6E-11 9.9E-16 90.5 4.5 109 129-237 14-178 (256)
268 PRK14240 phosphate transporter 99.1 1.3E-10 2.9E-15 94.8 7.7 107 131-237 13-172 (250)
269 PRK10762 D-ribose transporter 99.1 1.1E-10 2.5E-15 104.5 7.9 102 136-237 267-421 (501)
270 PRK09700 D-allose transporter 99.1 1.4E-10 3.1E-15 104.1 8.4 103 135-237 277-435 (510)
271 COG4604 CeuD ABC-type enteroch 99.1 2.4E-11 5.2E-16 93.2 2.9 110 128-237 8-161 (252)
272 PRK14271 phosphate ABC transpo 99.1 1.1E-10 2.4E-15 96.7 7.0 108 130-237 30-189 (276)
273 TIGR03796 NHPM_micro_ABC1 NHPM 99.1 5.1E-11 1.1E-15 111.0 5.6 104 134-237 492-641 (710)
274 PRK11174 cysteine/glutathione 99.1 3.2E-11 6.9E-16 110.1 4.1 103 133-237 362-511 (588)
275 TIGR00958 3a01208 Conjugate Tr 99.1 5.2E-11 1.1E-15 110.8 5.4 103 135-237 495-643 (711)
276 PRK14256 phosphate ABC transpo 99.1 6.4E-11 1.4E-15 96.9 5.4 107 131-237 14-174 (252)
277 cd03232 ABC_PDR_domain2 The pl 99.1 7.4E-11 1.6E-15 92.6 5.4 99 135-237 21-134 (192)
278 PRK14243 phosphate transporter 99.1 6.7E-11 1.5E-15 97.4 5.4 107 131-237 20-177 (264)
279 PRK13545 tagH teichoic acids e 99.1 4.9E-11 1.1E-15 105.3 4.7 103 135-237 38-169 (549)
280 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.1 6.2E-11 1.4E-15 96.1 5.0 44 135-178 17-60 (238)
281 PRK03695 vitamin B12-transport 99.1 1.1E-10 2.3E-15 95.3 6.4 101 136-237 11-159 (248)
282 cd03234 ABCG_White The White s 99.1 1.1E-10 2.4E-15 93.9 6.2 104 134-237 20-169 (226)
283 PRK14274 phosphate ABC transpo 99.1 5.3E-11 1.1E-15 97.7 4.5 107 131-237 22-181 (259)
284 PRK14253 phosphate ABC transpo 99.1 7.7E-11 1.7E-15 96.2 5.4 107 131-237 13-171 (249)
285 TIGR02857 CydD thiol reductant 99.1 6.1E-11 1.3E-15 106.9 5.2 103 135-237 336-484 (529)
286 TIGR02633 xylG D-xylose ABC tr 99.1 1.5E-10 3.3E-15 103.7 7.7 104 134-237 273-429 (500)
287 PRK14249 phosphate ABC transpo 99.1 7.8E-11 1.7E-15 96.3 5.4 107 131-237 14-173 (251)
288 COG4988 CydD ABC-type transpor 99.1 1.5E-10 3.2E-15 101.9 7.3 103 135-237 335-482 (559)
289 cd03253 ABCC_ATM1_transporter 99.1 4.1E-11 8.8E-16 97.0 3.6 103 135-237 15-163 (236)
290 PRK14262 phosphate ABC transpo 99.1 5.9E-11 1.3E-15 96.9 4.5 107 131-237 13-172 (250)
291 cd03291 ABCC_CFTR1 The CFTR su 99.1 1.3E-10 2.8E-15 96.4 6.5 102 134-237 50-185 (282)
292 PRK14270 phosphate ABC transpo 99.1 7.6E-11 1.7E-15 96.3 5.1 106 132-237 15-173 (251)
293 PRK14239 phosphate transporter 99.1 8.4E-11 1.8E-15 96.1 5.3 107 131-237 15-174 (252)
294 PRK10261 glutathione transport 99.1 1.5E-10 3.3E-15 106.1 7.6 103 135-237 338-489 (623)
295 PRK11176 lipid transporter ATP 99.1 1.8E-10 3.9E-15 105.0 8.0 103 134-237 356-506 (582)
296 PRK14272 phosphate ABC transpo 99.1 6.9E-11 1.5E-15 96.6 4.8 43 131-173 14-56 (252)
297 PRK11288 araG L-arabinose tran 99.1 7.8E-11 1.7E-15 105.5 5.5 103 135-237 267-422 (501)
298 cd03289 ABCC_CFTR2 The CFTR su 99.1 3.8E-11 8.3E-16 99.2 3.2 102 135-237 18-164 (275)
299 PRK14260 phosphate ABC transpo 99.1 7.7E-11 1.7E-15 96.8 4.8 107 131-237 17-176 (259)
300 PRK14258 phosphate ABC transpo 99.1 9.9E-11 2.1E-15 96.2 5.4 107 131-237 17-176 (261)
301 PRK14244 phosphate ABC transpo 99.1 7.2E-11 1.6E-15 96.5 4.6 105 132-237 16-175 (251)
302 PRK13549 xylose transporter AT 99.1 2E-10 4.4E-15 103.0 7.9 104 134-237 275-431 (506)
303 PRK10982 galactose/methyl gala 99.1 1.8E-10 3.9E-15 102.9 7.4 103 135-237 262-417 (491)
304 PRK15134 microcin C ABC transp 99.1 2.1E-10 4.5E-15 103.5 7.7 102 135-237 300-451 (529)
305 PRK14238 phosphate transporter 99.1 6.6E-11 1.4E-15 97.8 4.2 107 131-237 34-193 (271)
306 PRK14245 phosphate ABC transpo 99.1 6.6E-11 1.4E-15 96.6 4.1 107 131-237 13-172 (250)
307 PRK10938 putative molybdenum t 99.1 1.5E-10 3.3E-15 103.4 6.7 105 131-237 270-427 (490)
308 cd00267 ABC_ATPase ABC (ATP-bi 99.1 8.1E-11 1.8E-15 89.3 4.2 94 135-237 13-106 (157)
309 TIGR03375 type_I_sec_LssB type 99.1 7.5E-11 1.6E-15 109.6 4.7 102 135-237 479-627 (694)
310 TIGR00954 3a01203 Peroxysomal 99.1 1.8E-10 3.9E-15 106.2 7.1 104 134-237 465-608 (659)
311 PRK13657 cyclic beta-1,2-gluca 99.1 7E-11 1.5E-15 107.8 4.2 102 134-237 348-497 (588)
312 PRK14236 phosphate transporter 99.1 9.2E-11 2E-15 97.0 4.4 107 131-237 35-194 (272)
313 TIGR01193 bacteriocin_ABC ABC- 99.1 1E-10 2.2E-15 109.0 5.1 103 134-237 487-637 (708)
314 PRK10790 putative multidrug tr 99.1 9.4E-11 2E-15 107.1 4.7 104 134-237 354-502 (592)
315 TIGR01194 cyc_pep_trnsptr cycl 99.1 1.6E-10 3.4E-15 104.8 6.0 103 135-237 356-496 (555)
316 PRK10789 putative multidrug tr 99.1 1.2E-10 2.7E-15 105.8 5.2 103 134-237 328-477 (569)
317 PRK14266 phosphate ABC transpo 99.1 1.3E-10 2.7E-15 95.0 4.8 107 131-237 13-172 (250)
318 PRK14252 phosphate ABC transpo 99.1 3.2E-10 7E-15 93.4 7.1 107 131-237 26-187 (265)
319 COG1123 ATPase components of v 99.1 3.7E-10 8E-15 99.5 7.8 103 135-237 23-180 (539)
320 COG0396 sufC Cysteine desulfur 99.1 4.8E-10 1E-14 88.1 7.2 104 134-237 17-170 (251)
321 PRK14261 phosphate ABC transpo 99.1 4.2E-10 9.1E-15 92.1 7.1 107 131-237 16-175 (253)
322 TIGR02203 MsbA_lipidA lipid A 99.1 1.9E-10 4.2E-15 104.6 5.6 102 135-237 346-495 (571)
323 TIGR02204 MsbA_rel ABC transpo 99.0 2E-10 4.4E-15 104.6 5.3 103 135-237 354-502 (576)
324 PLN03210 Resistant to P. syrin 99.0 7E-10 1.5E-14 108.2 9.2 98 128-237 184-304 (1153)
325 cd03288 ABCC_SUR2 The SUR doma 99.0 4.5E-10 9.7E-15 92.2 6.7 103 135-237 35-182 (257)
326 COG4674 Uncharacterized ABC-ty 99.0 2E-11 4.4E-16 93.4 -1.4 109 129-237 13-173 (249)
327 TIGR01842 type_I_sec_PrtD type 99.0 3.1E-10 6.6E-15 102.7 5.7 104 134-237 331-480 (544)
328 PLN03211 ABC transporter G-25; 99.0 1.4E-10 3E-15 106.6 3.6 108 130-237 77-232 (659)
329 PRK14257 phosphate ABC transpo 99.0 3.1E-10 6.7E-15 96.2 4.9 102 135-237 96-251 (329)
330 PLN03073 ABC transporter F fam 99.0 4E-10 8.7E-15 104.4 5.9 41 130-170 186-226 (718)
331 TIGR01846 type_I_sec_HlyB type 99.0 2.9E-10 6.2E-15 105.7 4.9 103 134-237 470-619 (694)
332 COG0444 DppD ABC-type dipeptid 99.0 2.2E-10 4.8E-15 94.3 3.7 104 134-237 18-179 (316)
333 COG1132 MdlB ABC-type multidru 99.0 3E-10 6.5E-15 103.3 4.9 107 131-237 338-491 (567)
334 PRK14255 phosphate ABC transpo 99.0 1.1E-09 2.4E-14 89.5 7.7 107 131-237 15-174 (252)
335 TIGR01192 chvA glucan exporter 99.0 3.7E-10 8E-15 103.0 5.3 103 134-237 348-497 (585)
336 cd01128 rho_factor Transcripti 99.0 1.3E-09 2.7E-14 88.6 7.2 90 144-237 13-111 (249)
337 PLN03130 ABC transporter C fam 99.0 1.4E-09 3E-14 108.7 8.3 102 135-237 631-766 (1622)
338 KOG0057 Mitochondrial Fe/S clu 99.0 1.5E-09 3.3E-14 94.7 7.5 107 130-237 360-513 (591)
339 COG4161 ArtP ABC-type arginine 99.0 1.4E-09 3.1E-14 81.1 5.8 110 128-237 9-167 (242)
340 COG4136 ABC-type uncharacteriz 99.0 1.6E-09 3.6E-14 79.8 6.0 101 134-237 15-160 (213)
341 KOG0066 eIF2-interacting prote 98.9 1.6E-09 3.5E-14 92.5 6.7 106 132-237 598-730 (807)
342 TIGR01257 rim_protein retinal- 98.9 3.9E-10 8.4E-15 113.2 3.4 104 134-237 943-1087(2272)
343 COG4778 PhnL ABC-type phosphon 98.9 1.7E-09 3.7E-14 81.3 5.9 103 135-237 25-178 (235)
344 KOG0062 ATPase component of AB 98.9 1.6E-09 3.4E-14 93.9 6.5 106 129-237 88-224 (582)
345 COG1101 PhnK ABC-type uncharac 98.9 3.6E-09 7.8E-14 82.4 7.7 104 134-237 19-174 (263)
346 TIGR01257 rim_protein retinal- 98.9 9.8E-10 2.1E-14 110.4 5.6 107 131-237 1947-2096(2272)
347 COG4172 ABC-type uncharacteriz 98.9 3.9E-09 8.4E-14 89.3 8.1 102 135-237 301-452 (534)
348 TIGR01187 potA spermidine/putr 98.9 4.2E-09 9E-14 89.3 8.3 86 152-237 1-126 (325)
349 KOG0927 Predicted transporter 98.9 1.2E-09 2.6E-14 95.1 4.9 107 131-237 85-247 (614)
350 PRK10535 macrolide transporter 98.9 3.3E-09 7.1E-14 97.8 7.6 103 135-237 22-170 (648)
351 PLN03232 ABC transporter C fam 98.9 2E-09 4.3E-14 107.2 6.0 104 134-237 1249-1397(1495)
352 PLN03232 ABC transporter C fam 98.9 3.2E-09 6.9E-14 105.8 7.1 102 135-237 631-766 (1495)
353 PTZ00243 ABC transporter; Prov 98.9 3.3E-09 7.1E-14 105.8 6.7 104 134-237 673-808 (1560)
354 PLN03130 ABC transporter C fam 98.9 4.9E-09 1.1E-13 104.8 7.9 103 135-237 1253-1400(1622)
355 PTZ00265 multidrug resistance 98.9 2E-09 4.3E-14 106.7 5.1 39 135-173 1182-1220(1466)
356 TIGR00957 MRP_assoc_pro multi 98.9 4.9E-09 1.1E-13 104.6 7.9 102 135-237 652-786 (1522)
357 TIGR01271 CFTR_protein cystic 98.9 4.6E-09 1E-13 104.6 7.4 103 134-237 439-574 (1490)
358 TIGR00955 3a01204 The Eye Pigm 98.9 3.8E-09 8.3E-14 96.9 6.1 105 133-237 37-192 (617)
359 PTZ00265 multidrug resistance 98.8 4.4E-09 9.6E-14 104.2 6.1 44 135-178 399-442 (1466)
360 PTZ00243 ABC transporter; Prov 98.8 4.5E-09 9.7E-14 104.9 6.0 103 135-237 1324-1472(1560)
361 COG1245 Predicted ATPase, RNas 98.8 2.4E-08 5.2E-13 85.7 9.3 90 147-237 367-481 (591)
362 KOG0055 Multidrug/pheromone ex 98.8 5.1E-09 1.1E-13 99.4 5.4 102 135-237 367-515 (1228)
363 TIGR03015 pepcterm_ATPase puta 98.8 1.6E-07 3.5E-12 77.4 13.7 100 134-237 29-131 (269)
364 TIGR00957 MRP_assoc_pro multi 98.8 8.1E-09 1.7E-13 103.1 6.8 104 134-237 1299-1447(1522)
365 PRK00411 cdc6 cell division co 98.8 1E-07 2.2E-12 82.9 12.5 109 128-237 30-146 (394)
366 KOG0056 Heavy metal exporter H 98.8 1.1E-08 2.4E-13 88.5 6.2 105 133-237 550-700 (790)
367 COG4178 ABC-type uncharacteriz 98.8 8.1E-09 1.7E-13 92.3 5.3 104 134-237 406-541 (604)
368 cd03270 ABC_UvrA_I The excisio 98.8 2.3E-08 5E-13 80.4 7.5 31 134-164 8-38 (226)
369 PLN03140 ABC transporter G fam 98.8 4.4E-09 9.6E-14 104.0 3.9 105 133-237 892-1045(1470)
370 TIGR00956 3a01205 Pleiotropic 98.8 3.6E-09 7.8E-14 104.6 3.1 103 135-237 75-235 (1394)
371 COG4615 PvdE ABC-type sideroph 98.8 3E-08 6.5E-13 83.8 7.9 103 135-237 337-474 (546)
372 TIGR00956 3a01205 Pleiotropic 98.7 5.1E-09 1.1E-13 103.6 3.4 104 134-237 776-928 (1394)
373 TIGR00767 rho transcription te 98.7 1.9E-08 4.2E-13 86.1 5.8 95 139-237 160-263 (415)
374 TIGR01271 CFTR_protein cystic 98.7 3.5E-08 7.6E-13 98.4 7.8 103 134-237 1232-1379(1490)
375 KOG0061 Transporter, ABC super 98.7 3.3E-08 7.1E-13 90.3 6.9 105 133-237 42-196 (613)
376 PLN03140 ABC transporter G fam 98.7 5.7E-09 1.2E-13 103.3 2.0 104 134-237 178-362 (1470)
377 cd03278 ABC_SMC_barmotin Barmo 98.7 8E-08 1.7E-12 75.7 7.8 97 140-237 16-143 (197)
378 KOG0054 Multidrug resistance-a 98.7 6.6E-08 1.4E-12 93.7 8.4 102 135-237 535-669 (1381)
379 PF13401 AAA_22: AAA domain; P 98.7 9.6E-08 2.1E-12 69.8 7.4 89 147-237 4-95 (131)
380 PRK09376 rho transcription ter 98.6 1.2E-07 2.5E-12 81.1 8.3 89 145-237 167-264 (416)
381 cd03272 ABC_SMC3_euk Eukaryoti 98.6 2.8E-07 6.1E-12 74.9 10.0 22 147-168 23-44 (243)
382 KOG0055 Multidrug/pheromone ex 98.6 4.3E-08 9.4E-13 93.2 5.7 103 134-237 1003-1152(1228)
383 TIGR02928 orc1/cdc6 family rep 98.6 6.1E-07 1.3E-11 77.2 11.9 109 128-237 15-137 (365)
384 COG4172 ABC-type uncharacteriz 98.6 4.9E-08 1.1E-12 82.8 4.8 104 133-237 22-183 (534)
385 PTZ00202 tuzin; Provisional 98.6 3.7E-06 7.9E-11 72.8 14.9 70 128-206 262-336 (550)
386 PF13191 AAA_16: AAA ATPase do 98.5 4.3E-07 9.4E-12 70.2 7.8 43 130-172 2-49 (185)
387 COG5265 ATM1 ABC-type transpor 98.5 1.6E-07 3.6E-12 79.9 5.4 106 132-237 274-425 (497)
388 COG2401 ABC-type ATPase fused 98.5 5.5E-08 1.2E-12 82.7 2.6 102 136-237 398-533 (593)
389 KOG0059 Lipid exporter ABCA1 a 98.5 5E-08 1.1E-12 92.8 2.4 110 128-237 571-724 (885)
390 cd00009 AAA The AAA+ (ATPases 98.5 1.2E-06 2.6E-11 64.5 8.8 41 131-171 1-43 (151)
391 cd03273 ABC_SMC2_euk Eukaryoti 98.5 1.7E-06 3.7E-11 70.7 10.2 25 147-171 25-49 (251)
392 cd03240 ABC_Rad50 The catalyti 98.4 1.4E-06 3.1E-11 69.0 9.2 28 148-175 23-54 (204)
393 cd03279 ABC_sbcCD SbcCD and ot 98.4 2.6E-06 5.6E-11 67.9 10.1 23 147-169 28-50 (213)
394 cd03243 ABC_MutS_homologs The 98.4 2.5E-07 5.5E-12 73.1 4.0 27 144-170 26-52 (202)
395 PRK11331 5-methylcytosine-spec 98.4 4.9E-06 1.1E-10 72.6 11.9 68 128-196 175-242 (459)
396 KOG0060 Long-chain acyl-CoA tr 98.4 6.6E-07 1.4E-11 79.0 6.4 104 133-237 447-596 (659)
397 KOG0054 Multidrug resistance-a 98.4 8E-07 1.7E-11 86.4 7.4 106 132-237 1151-1301(1381)
398 KOG0066 eIF2-interacting prote 98.4 1.3E-07 2.9E-12 81.0 1.5 92 146-237 289-438 (807)
399 cd03280 ABC_MutS2 MutS2 homolo 98.4 3.8E-07 8.3E-12 72.0 3.9 29 140-168 20-49 (200)
400 COG1245 Predicted ATPase, RNas 98.4 5.9E-07 1.3E-11 77.4 5.1 92 146-237 99-239 (591)
401 cd03275 ABC_SMC1_euk Eukaryoti 98.4 3.3E-06 7.1E-11 68.9 9.4 24 148-171 23-46 (247)
402 KOG0062 ATPase component of AB 98.3 9.3E-07 2E-11 77.1 5.8 103 135-237 378-508 (582)
403 cd03276 ABC_SMC6_euk Eukaryoti 98.3 6.4E-06 1.4E-10 64.9 10.1 90 148-237 22-139 (198)
404 cd03283 ABC_MutS-like MutS-lik 98.3 2.5E-06 5.4E-11 67.3 7.6 26 146-171 24-49 (199)
405 cd03281 ABC_MSH5_euk MutS5 hom 98.3 1.4E-06 2.9E-11 69.5 5.8 22 148-169 30-51 (213)
406 smart00382 AAA ATPases associa 98.2 6.8E-06 1.5E-10 59.8 8.2 25 147-171 2-26 (148)
407 PRK08118 topology modulation p 98.2 8.6E-07 1.9E-11 67.9 3.3 36 148-183 2-37 (167)
408 cd03274 ABC_SMC4_euk Eukaryoti 98.2 3.2E-06 6.9E-11 67.4 6.7 21 148-168 26-46 (212)
409 cd03271 ABC_UvrA_II The excisi 98.2 7.2E-06 1.6E-10 67.2 7.8 32 136-167 10-41 (261)
410 PRK08149 ATP synthase SpaL; Va 98.2 5E-06 1.1E-10 72.4 7.2 102 130-237 135-249 (428)
411 COG4138 BtuD ABC-type cobalami 98.2 3.2E-07 6.9E-12 69.6 -0.2 99 138-237 16-158 (248)
412 smart00534 MUTSac ATPase domai 98.2 2.1E-06 4.6E-11 66.9 4.4 20 149-168 1-20 (185)
413 cd03227 ABC_Class2 ABC-type Cl 98.2 8.1E-06 1.7E-10 62.2 7.2 71 148-237 22-107 (162)
414 COG4170 SapD ABC-type antimicr 98.2 4.2E-07 9.1E-12 70.9 -0.0 107 131-237 17-184 (330)
415 PRK08972 fliI flagellum-specif 98.1 7.1E-06 1.5E-10 71.4 7.2 97 135-237 151-260 (444)
416 COG1129 MglA ABC-type sugar tr 98.1 7E-06 1.5E-10 72.4 7.0 106 132-237 270-427 (500)
417 cd03282 ABC_MSH4_euk MutS4 hom 98.1 8.3E-07 1.8E-11 70.2 0.9 35 137-171 19-53 (204)
418 KOG2355 Predicted ABC-type tra 98.1 1.5E-06 3.3E-11 67.6 2.3 100 137-237 30-173 (291)
419 PRK07594 type III secretion sy 98.1 1.1E-05 2.4E-10 70.4 7.7 102 130-237 139-253 (433)
420 PF05729 NACHT: NACHT domain 98.1 1.3E-05 2.7E-10 60.7 7.3 40 148-188 1-44 (166)
421 TIGR03498 FliI_clade3 flagella 98.1 1E-05 2.2E-10 70.5 7.2 101 131-237 125-238 (418)
422 KOG0064 Peroxisomal long-chain 98.1 1.8E-06 3.9E-11 75.6 2.5 105 133-237 494-638 (728)
423 TIGR02858 spore_III_AA stage I 98.1 1.4E-05 3E-10 65.9 7.4 31 148-178 112-142 (270)
424 PRK06936 type III secretion sy 98.1 1.7E-05 3.6E-10 69.3 8.1 101 131-237 147-260 (439)
425 cd00820 PEPCK_HprK Phosphoenol 98.0 1.1E-06 2.5E-11 61.7 0.4 32 137-168 5-36 (107)
426 PRK05688 fliI flagellum-specif 98.0 2.4E-05 5.2E-10 68.5 8.7 100 132-237 154-266 (451)
427 PRK06793 fliI flagellum-specif 98.0 1.6E-05 3.4E-10 69.4 7.5 96 136-237 146-254 (432)
428 PRK09099 type III secretion sy 98.0 1.7E-05 3.8E-10 69.4 7.8 102 130-237 147-261 (441)
429 TIGR03238 dnd_assoc_3 dnd syst 98.0 4.9E-06 1.1E-10 72.8 4.3 41 134-176 19-59 (504)
430 PRK14722 flhF flagellar biosyn 98.0 1.9E-05 4.1E-10 67.8 7.8 63 143-206 133-196 (374)
431 cd01130 VirB11-like_ATPase Typ 98.0 1E-05 2.2E-10 63.1 5.7 42 135-176 13-54 (186)
432 cd03285 ABC_MSH2_euk MutS2 hom 98.0 2E-06 4.3E-11 69.0 1.6 86 145-237 28-117 (222)
433 PRK07261 topology modulation p 98.0 2E-05 4.4E-10 60.6 7.1 23 149-171 2-24 (171)
434 COG1474 CDC6 Cdc6-related prot 98.0 8.1E-05 1.8E-09 64.0 11.1 107 128-237 17-131 (366)
435 PRK07196 fliI flagellum-specif 98.0 2.3E-05 4.9E-10 68.5 7.8 40 131-171 140-179 (434)
436 cd01136 ATPase_flagellum-secre 98.0 1.7E-05 3.7E-10 66.8 6.7 99 133-237 56-167 (326)
437 PRK07721 fliI flagellum-specif 98.0 3.2E-05 7E-10 67.9 8.6 40 133-173 145-184 (438)
438 PRK05922 type III secretion sy 98.0 2.7E-05 5.8E-10 68.0 7.6 97 135-237 146-255 (434)
439 PF05496 RuvB_N: Holliday junc 97.9 1.4E-05 3E-10 63.5 4.9 44 128-171 24-74 (233)
440 PRK12608 transcription termina 97.9 0.00013 2.7E-09 62.5 10.9 88 146-237 132-228 (380)
441 PRK14721 flhF flagellar biosyn 97.9 8.1E-05 1.7E-09 64.9 9.9 26 146-171 190-215 (420)
442 PF00004 AAA: ATPase family as 97.9 2.6E-05 5.7E-10 56.6 6.0 22 150-171 1-22 (132)
443 PRK06995 flhF flagellar biosyn 97.9 2.6E-05 5.7E-10 69.0 7.0 32 146-177 255-286 (484)
444 PF01637 Arch_ATPase: Archaeal 97.9 1.2E-05 2.7E-10 64.2 4.4 42 130-171 1-44 (234)
445 COG2256 MGS1 ATPase related to 97.9 5E-05 1.1E-09 64.7 8.1 43 129-171 25-72 (436)
446 TIGR03499 FlhF flagellar biosy 97.9 6.7E-05 1.5E-09 62.4 8.7 87 146-237 193-280 (282)
447 PRK08472 fliI flagellum-specif 97.9 9.1E-05 2E-09 64.8 9.8 39 132-171 143-181 (434)
448 cd01120 RecA-like_NTPases RecA 97.9 0.0001 2.2E-09 55.3 9.1 23 149-171 1-23 (165)
449 PRK10787 DNA-binding ATP-depen 97.9 0.00071 1.5E-08 63.8 16.3 44 128-171 322-373 (784)
450 TIGR02546 III_secr_ATP type II 97.9 7.7E-05 1.7E-09 65.4 9.2 42 130-172 129-170 (422)
451 PF04665 Pox_A32: Poxvirus A32 97.9 4E-05 8.6E-10 61.8 6.8 38 145-185 11-48 (241)
452 TIGR00235 udk uridine kinase. 97.9 9.6E-06 2.1E-10 64.3 3.1 27 146-172 5-31 (207)
453 PF13207 AAA_17: AAA domain; P 97.9 1.1E-05 2.4E-10 58.1 3.2 23 149-171 1-23 (121)
454 PF05621 TniB: Bacterial TniB 97.9 0.00034 7.5E-09 58.0 12.3 101 135-237 44-153 (302)
455 TIGR01026 fliI_yscN ATPase Fli 97.9 5.6E-05 1.2E-09 66.4 8.1 39 132-171 149-187 (440)
456 cd03287 ABC_MSH3_euk MutS3 hom 97.9 1.1E-05 2.5E-10 64.5 3.6 37 142-178 26-63 (222)
457 TIGR03497 FliI_clade2 flagella 97.9 3.6E-05 7.8E-10 67.1 6.5 99 133-237 124-235 (413)
458 PRK13342 recombination factor 97.9 6.6E-05 1.4E-09 65.9 8.3 43 129-171 13-60 (413)
459 PRK06002 fliI flagellum-specif 97.8 3.2E-05 7E-10 67.7 5.9 39 134-173 153-191 (450)
460 TIGR03496 FliI_clade1 flagella 97.8 4.7E-05 1E-09 66.3 6.8 98 134-237 125-235 (411)
461 cd03239 ABC_SMC_head The struc 97.8 8.4E-05 1.8E-09 57.5 7.5 22 149-170 24-45 (178)
462 PRK14723 flhF flagellar biosyn 97.8 6.5E-05 1.4E-09 69.7 7.8 26 146-171 184-209 (767)
463 PF00448 SRP54: SRP54-type pro 97.8 9.6E-05 2.1E-09 58.1 7.4 56 148-206 2-58 (196)
464 KOG0065 Pleiotropic drug resis 97.8 2.9E-06 6.2E-11 81.5 -1.4 40 132-171 802-841 (1391)
465 PRK06820 type III secretion sy 97.8 0.00012 2.5E-09 64.2 8.5 37 134-171 151-187 (440)
466 PRK09270 nucleoside triphospha 97.8 4.1E-05 8.9E-10 61.7 5.1 30 148-177 34-63 (229)
467 PRK12727 flagellar biosynthesi 97.8 0.00024 5.2E-09 63.4 10.1 28 144-171 347-374 (559)
468 TIGR00763 lon ATP-dependent pr 97.8 0.0022 4.7E-08 60.8 17.2 43 129-171 321-371 (775)
469 PRK10078 ribose 1,5-bisphospho 97.8 2.3E-05 5E-10 61.1 3.4 25 147-171 2-26 (186)
470 PRK08927 fliI flagellum-specif 97.7 0.00022 4.9E-09 62.4 9.6 91 142-237 153-256 (442)
471 PRK09825 idnK D-gluconate kina 97.7 2.8E-05 6E-10 60.1 3.6 27 146-172 2-28 (176)
472 cd02025 PanK Pantothenate kina 97.7 2E-05 4.4E-10 63.1 2.6 24 149-172 1-24 (220)
473 PRK00300 gmk guanylate kinase; 97.7 4.8E-05 1E-09 60.1 4.7 27 145-171 3-29 (205)
474 PRK10416 signal recognition pa 97.7 0.0003 6.5E-09 59.4 9.6 27 147-173 114-140 (318)
475 PRK13695 putative NTPase; Prov 97.7 2.7E-05 5.9E-10 60.0 3.0 24 149-172 2-25 (174)
476 PRK08533 flagellar accessory p 97.7 0.00029 6.3E-09 56.8 9.1 55 144-205 21-76 (230)
477 PRK05480 uridine/cytidine kina 97.7 3.4E-05 7.3E-10 61.2 3.2 26 146-171 5-30 (209)
478 TIGR03263 guanyl_kin guanylate 97.7 3.7E-05 8E-10 59.4 3.4 25 147-171 1-25 (180)
479 PRK04841 transcriptional regul 97.7 0.00053 1.1E-08 65.9 11.9 69 128-204 14-83 (903)
480 smart00763 AAA_PrkA PrkA AAA d 97.7 5.4E-05 1.2E-09 64.4 4.4 55 129-183 52-118 (361)
481 TIGR00150 HI0065_YjeE ATPase, 97.7 9.6E-05 2.1E-09 54.2 5.1 37 135-171 10-46 (133)
482 cd02023 UMPK Uridine monophosp 97.7 3.3E-05 7.1E-10 60.7 2.9 23 149-171 1-23 (198)
483 PF13555 AAA_29: P-loop contai 97.6 5.8E-05 1.3E-09 47.5 3.3 24 148-171 24-47 (62)
484 TIGR02322 phosphon_PhnN phosph 97.6 4.6E-05 1E-09 58.9 3.4 24 148-171 2-25 (179)
485 KOG2543 Origin recognition com 97.6 0.0008 1.7E-08 57.2 10.8 73 127-205 5-82 (438)
486 PF03193 DUF258: Protein of un 97.6 9.6E-05 2.1E-09 55.9 4.8 36 135-171 24-59 (161)
487 COG2255 RuvB Holliday junction 97.6 6.6E-05 1.4E-09 61.3 4.0 44 128-171 26-76 (332)
488 cd03284 ABC_MutS1 MutS1 homolo 97.6 4.8E-05 1E-09 60.8 3.3 22 148-169 31-52 (216)
489 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00052 1.1E-08 55.3 9.3 61 144-205 16-79 (235)
490 cd01131 PilT Pilus retraction 97.6 9.6E-05 2.1E-09 58.2 4.8 25 148-172 2-26 (198)
491 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00044 9.5E-09 56.9 8.7 93 143-237 65-171 (274)
492 PRK05541 adenylylsulfate kinas 97.6 0.00016 3.6E-09 55.6 6.0 28 144-171 4-31 (176)
493 cd01393 recA_like RecA is a b 97.6 0.00093 2E-08 53.5 10.5 93 143-237 15-122 (226)
494 TIGR02903 spore_lon_C ATP-depe 97.6 0.0013 2.8E-08 60.5 12.6 45 128-172 154-200 (615)
495 TIGR00554 panK_bact pantothena 97.6 5.4E-05 1.2E-09 62.9 3.2 25 148-172 63-87 (290)
496 PRK04195 replication factor C 97.6 0.00034 7.4E-09 62.6 8.5 44 128-171 14-63 (482)
497 PF00485 PRK: Phosphoribulokin 97.6 6.4E-05 1.4E-09 58.9 3.5 24 149-172 1-24 (194)
498 COG0466 Lon ATP-dependent Lon 97.6 0.0017 3.6E-08 59.4 12.4 42 130-171 325-374 (782)
499 TIGR01069 mutS2 MutS2 family p 97.5 6E-05 1.3E-09 70.8 3.2 29 142-170 316-345 (771)
500 TIGR01242 26Sp45 26S proteasom 97.5 0.00017 3.8E-09 62.2 5.7 44 128-171 122-180 (364)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.94 E-value=3.6e-25 Score=205.95 Aligned_cols=227 Identities=34% Similarity=0.595 Sum_probs=179.4
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhHHHh----hh-hhhh----------
Q 044827 3 VMKVGDVSDLEDKLIALQNELQKLTEVRNDVMRRVVVAEQHYMMKR-KAQGWKLLKLKL----GN-YKKL---------- 66 (237)
Q Consensus 3 ~~~~~~~~~~~~~~~~L~~~l~~l~~~l~d~~~~~~~a~~~~~~~~-~v~~Wl~~l~~~----ed-l~~~---------- 66 (237)
..++..+.+.++++..|+++|..|+.++.| |+.+ +... .+..|...++++ +| ++.+
T Consensus 17 ~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 17 NRESECLDGKDNYILELKENLKALQSALED-------LDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888999999999999999999999 5655 4344 777888888865 33 2221
Q ss_pred ------hHHHhhhhcCCccCCCchhHhhHHHHHHHHHHHHHHHhcCCCcccccc-cCCCCCCCCCCCcCcc-cchHHHHH
Q 044827 67 ------NLKKLKNCLGGYCSKSCKSSYKFGKEVARKLQAVISLKGEGDFKDVAE-TVPEDPVDEMPLERTI-VGQQATFQ 138 (237)
Q Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~g~~~~~~ 138 (237)
....++.|+++.|..+....+.+++++.++++.++.+..+..|..... ..+.+....+|..+.. +|.+..++
T Consensus 89 ~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~ 168 (889)
T KOG4658|consen 89 DLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLE 168 (889)
T ss_pred HHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHH
Confidence 112334566677778888889999999999999999987765554443 2233333344443333 99999999
Q ss_pred HHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCcCCCCHH
Q 044827 139 KVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSWKNRSIE 216 (237)
Q Consensus 139 ~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 216 (237)
.+...|..+ .+++|+||||+||||||+.|+|+...+.++|+.++||+||++++...+..+|+..++............
T Consensus 169 kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~ 248 (889)
T KOG4658|consen 169 KLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEED 248 (889)
T ss_pred HHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHH
Confidence 999999876 699999999999999999999999448999999999999999999999999999999865555555557
Q ss_pred HHHHHHHHHhhcCCcEEEecC
Q 044827 217 NEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 217 ~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.+..|.+.|.+++|+|||||
T Consensus 249 ~~~~~i~~~L~~krfllvLDD 269 (889)
T KOG4658|consen 249 ELASKLLNLLEGKRFLLVLDD 269 (889)
T ss_pred HHHHHHHHHhccCceEEEEec
Confidence 888999999999999999998
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=9.7e-17 Score=127.27 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=88.3
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce---------------------EEEEEEec
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD---------------------IVIWVVVS 187 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~---------------------~~~~v~v~ 187 (237)
..||....+++++..+..|+.++|+||+|||||||+++|+|...+..|... ...|.++.
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHH
Confidence 346767889999999999999999999999999999999999988887432 24566665
Q ss_pred ccc------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 188 KEL------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 188 ~~~------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++. ........+++.+|+.+.. ...++|++|+..|+++|...|.+|+||+
T Consensus 91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 542 1234678899999996432 3445799999999999999999999996
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.61 E-value=4.1e-15 Score=123.68 Aligned_cols=104 Identities=33% Similarity=0.574 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhhc----CCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCC
Q 044827 133 QQATFQKVLNCLAE----NAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTD 208 (237)
Q Consensus 133 ~~~~~~~i~~~l~~----~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~ 208 (237)
|+..++.|...|.. ..+++|+|++|+||||||..++.+. ....+|+..+|+.++...+...++..++..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 56788888888877 2899999999999999999999886 368899999999999988889999999999988644
Q ss_pred Cc-CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 209 SW-KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 209 ~~-~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. ...+.+.....|.+.|.++++||||||
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDd 109 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDD 109 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEE
T ss_pred ccccccccccccccchhhhccccceeeeee
Confidence 33 445677788889999999999999997
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=6.1e-16 Score=119.84 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=86.9
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE---E------------EEeccccC-
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI---W------------VVVSKELK- 191 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~---~------------v~v~~~~~- 191 (237)
...||....+++|+..+..|++++|+||+|+|||||++.|.+...+.+|...+-- . -.|.|.|+
T Consensus 9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 3468888999999999999999999999999999999999999988888643211 0 02333332
Q ss_pred ------------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+...++|+++|+.+.. ...++|+|||..||++|.-+|.++++|+
T Consensus 89 FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 89 FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 245667889999996533 2345699999999999999999999996
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.4e-15 Score=122.07 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=82.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEeccc------c
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKE------L 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~------~ 190 (237)
.|+....+++|++.+..|++++|+||||+|||||+|.|.|..++.+|.... ..|| .|. |
T Consensus 13 ~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV--PQ~~~~d~~f 90 (254)
T COG1121 13 SYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV--PQKSSVDRSF 90 (254)
T ss_pred EECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc--CcccccCCCC
Confidence 355336999999999999999999999999999999999988788886432 2222 221 1
Q ss_pred ------------------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+.|+++|+.+-. ...++|++|+..||++|..++.|||||+
T Consensus 91 P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE 165 (254)
T COG1121 91 PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE 165 (254)
T ss_pred CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC
Confidence 0135667889999886422 2445799999999999999999999996
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=4e-15 Score=117.69 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE------------------EEEEeccccC-----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV------------------IWVVVSKELK----- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~------------------~~v~v~~~~~----- 191 (237)
..+++++..+..|+.++|+||+|+|||||+++|.+...|..|.+.+. -.-.+.|.++
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 57889999999999999999999999999999999998888853220 0012222221
Q ss_pred -------------------HHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -------------------LERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -------------------~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+|+.+.. ...++|++||..||++|.++|.+|+.|+
T Consensus 99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE 168 (226)
T COG1136 99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE 168 (226)
T ss_pred CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC
Confidence 234456778888986322 2445699999999999999999999996
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.55 E-value=5.3e-15 Score=119.27 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=81.6
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEE--------
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWV-------- 184 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v-------- 184 (237)
..||....++++++.+..|++++|+||||+|||||+|.+++..++..|.... ..++
T Consensus 10 ~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 10 FGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred EEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 3477778999999999999999999999999999999999998777874322 1111
Q ss_pred --------Eecc--------cc--CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 --------VVSK--------EL--KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 --------~v~~--------~~--~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+. .. .......+.++.+++..-. ...++|++|+..||++|..++.+|+||+
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE 164 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE 164 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence 0000 00 1233567778888875321 2345689999999999999999999996
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.52 E-value=4.3e-14 Score=111.52 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=81.8
Q ss_pred ccchHH----HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE---------------EEEecccc
Q 044827 130 IVGQQA----TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI---------------WVVVSKEL 190 (237)
Q Consensus 130 ~~g~~~----~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~---------------~v~v~~~~ 190 (237)
.|+... .++++++.+..|++++|+|++|+|||||++++.|..++..|+..+.- --.|.|++
T Consensus 12 ~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp 91 (252)
T COG1124 12 VYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDP 91 (252)
T ss_pred EecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCC
Confidence 355555 89999999999999999999999999999999999988888543210 01122221
Q ss_pred ------------------------CHHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------------------KLERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------------------~~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+......++++++|++.. ....++|+.+|..|+++|.-+|.+||||+
T Consensus 92 ~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 92 YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred ccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 112225778889998742 23456799999999999999999999996
No 9
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.49 E-value=1.2e-14 Score=122.18 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=85.7
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------------EEE
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------------VIW 183 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------------~~~ 183 (237)
+..||....+++++..+..|+.++++||+|||||||+++|+|...+.+|.+.+ ..-
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH 91 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH 91 (352)
T ss_pred eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCC
Confidence 45688888899999999999999999999999999999999999998885432 001
Q ss_pred EEeccc--c-----------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 184 VVVSKE--L-----------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 184 v~v~~~--~-----------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+|.++ | .......++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 92 ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 92 MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 122222 0 1234667888888886532 2345699999999999999999999996
No 10
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=1.2e-14 Score=114.75 Aligned_cols=110 Identities=21% Similarity=0.220 Sum_probs=83.9
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------------EEE-----
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------------VIW----- 183 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------------~~~----- 183 (237)
+.-||.-..++++++.+..|++++|+||||+||||+++.|.|.++|..|...+ +-|
T Consensus 11 ~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 11 SKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred eeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 44588889999999999999999999999999999999999999888885322 000
Q ss_pred ---EEec------------------------cccCHHHHHHHHHHHCCCCCCCcC----CCCHHHHHHHHHHHhhcCCcE
Q 044827 184 ---VVVS------------------------KELKLERIQEDIGKKIRLPTDSWK----NRSIENEARDIYNILRKKKFL 232 (237)
Q Consensus 184 ---v~v~------------------------~~~~~~~~~~~il~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~L 232 (237)
.+|- ......+....+++.+|+...... .+.|++++..|+++|..+|.|
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~l 170 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKL 170 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCE
Confidence 0000 011233455678888998654322 334899999999999999999
Q ss_pred EEecC
Q 044827 233 LLLDD 237 (237)
Q Consensus 233 lvLDd 237 (237)
|+||+
T Consensus 171 LLLDE 175 (250)
T COG0411 171 LLLDE 175 (250)
T ss_pred EEecC
Confidence 99996
No 11
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.46 E-value=2.9e-13 Score=120.29 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEE---Eeccc-----------------c-C-
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWV---VVSKE-----------------L-K- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v---~v~~~-----------------~-~- 191 (237)
...++++++.+..|+.|+|+|+||+|||||+++|.|...+.+|.+.+..-+ ++.|. + +
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~ 414 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG 414 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Confidence 468999999999999999999999999999999999887777765442211 11111 1 1
Q ss_pred HHHHHHHHHHHCCCCCCCc-----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 LERIQEDIGKKIRLPTDSW-----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....++.++.+|+++.... ..++|++.+..|+..+..++.+||||+
T Consensus 415 ~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 1466788999999875432 234689999999999999999999996
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.4e-13 Score=115.13 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=82.5
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEE----------E
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIW----------V 184 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~----------v 184 (237)
..||....+++++..+.+|+.++|+||+|||||||+++|+|...+.+|...+ ... .
T Consensus 11 K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhm 90 (338)
T COG3839 11 KSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHM 90 (338)
T ss_pred EEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCC
Confidence 3456544889999999999999999999999999999999999888885432 111 1
Q ss_pred Eecccc------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 VVSKEL------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 ~v~~~~------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+|.++. ...+..+++++.+++.+.. ...++|++|+..|+++|..+|.+++||+
T Consensus 91 tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 91 TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 222221 2345567788888886432 2345699999999999999999999996
No 13
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-13 Score=108.48 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=82.5
Q ss_pred cCcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------------------
Q 044827 127 ERTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------------------- 180 (237)
Q Consensus 127 ~~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------------------- 180 (237)
.+..++...++++|+..+..|+..+|+|+||+|||||+++++++.++..+....
T Consensus 37 v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~ 116 (257)
T COG1119 37 VSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELH 116 (257)
T ss_pred eEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHH
Confidence 344578889999999999999999999999999999999999999776553211
Q ss_pred --------------EEEE---Eecc-ccC--HHHHHHHHHHHCCCCCCC---c-CCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 181 --------------VIWV---VVSK-ELK--LERIQEDIGKKIRLPTDS---W-KNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 181 --------------~~~v---~v~~-~~~--~~~~~~~il~~~~~~~~~---~-~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
..|. .+.+ ..+ .......+++.+|+.... + ..+.|++++..|+|+|..+|-|||||
T Consensus 117 ~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLD 196 (257)
T COG1119 117 ERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196 (257)
T ss_pred hhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEec
Confidence 0000 1111 122 234567788999886422 2 22349999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 197 E 197 (257)
T COG1119 197 E 197 (257)
T ss_pred C
Confidence 6
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.44 E-value=8.5e-14 Score=116.00 Aligned_cols=110 Identities=23% Similarity=0.224 Sum_probs=84.3
Q ss_pred Ccccc-hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EE----------EEecccc---
Q 044827 128 RTIVG-QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IW----------VVVSKEL--- 190 (237)
Q Consensus 128 ~~~~g-~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~----------v~v~~~~--- 190 (237)
+..|| ....++++++.+..|++++++|+||+|||||+++++|...+.+|...+. .| -++.+..
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~ 90 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY 90 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence 44678 5889999999999999999999999999999999999998888864321 10 1122211
Q ss_pred ---C------------------HHHHHHHHHHHCCCCCCC---c-CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---K------------------LERIQEDIGKKIRLPTDS---W-KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~------------------~~~~~~~il~~~~~~~~~---~-~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .......+++.+++.... . ..+.|++++..|+.+|.++|.++|||+
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 91 PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 0 134567899999997521 1 234599999999999999999999996
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.44 E-value=4.2e-13 Score=102.14 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------EEE-----EEecccc------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------VIW-----VVVSKEL------ 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------~~~-----v~v~~~~------ 190 (237)
...++++++.+..|+.+-|+||+|+|||||+|+||+...+..|...+ ..+ -.|.|++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~ 94 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccc
Confidence 45899999999999999999999999999999999999998885322 000 0122222
Q ss_pred ------------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+...+.++..|+.+.. ...++|+||+..||+++.++|.+|+.|+
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE 163 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE 163 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC
Confidence 2345667788888886432 2345799999999999999999999985
No 16
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=8.6e-14 Score=109.06 Aligned_cols=110 Identities=25% Similarity=0.251 Sum_probs=76.3
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEE------
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWV------ 184 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v------ 184 (237)
+..||.-.+++.+++.+..|++++|+|+||+|||||++.|+|..++.+|...+ ..+|
T Consensus 10 ~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 10 SAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred eecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 34588888999999999999999999999999999999999999777775432 1111
Q ss_pred ----EeccccC----------H-HHHHHHHHHHCCC-----CCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 ----VVSKELK----------L-ERIQEDIGKKIRL-----PTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 ----~v~~~~~----------~-~~~~~~il~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+|.++.- . ......+++.|-. ....-..++|+||...|+++|..+|.||+||+
T Consensus 90 F~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 90 FPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred hhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 1111110 0 0002223333310 00112345689999999999999999999996
No 17
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=1.8e-13 Score=110.08 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EEEEEeccccCHHHHHHHHHHHCCCCCC----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VIWVVVSKELKLERIQEDIGKKIRLPTD---- 208 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~~v~v~~~~~~~~~~~~il~~~~~~~~---- 208 (237)
.++++|++.+..|++++|||.+|||||||++.|.+..+++.|..-+ ..+..++ .....+.+.++++.+|++..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhc
Confidence 5789999999999999999999999999999999999888886332 2222222 22344567888999997642
Q ss_pred -CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 209 -SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 209 -~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.-++|+.|+..||++|.-+|.++|+|+
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 23455799999999999999999999996
No 18
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.42 E-value=1.3e-13 Score=109.44 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=86.4
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------------------E
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------------------V 181 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------------------~ 181 (237)
+..|+....+++++..+..|+.+.++|++||||||++++|.....+.+|..-+ .
T Consensus 8 sk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred ehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 45678888999999999999999999999999999999999999898885322 1
Q ss_pred EEEEeccc---------c---CHHHHHHHHHHHCCCCCC------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 182 IWVVVSKE---------L---KLERIQEDIGKKIRLPTD------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 182 ~~v~v~~~---------~---~~~~~~~~il~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+|.++ + .......+++..+|++.. ....++|+||+.-++++|...|.+|++|+
T Consensus 88 Ph~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE 161 (309)
T COG1125 88 PHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE 161 (309)
T ss_pred CCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC
Confidence 11122222 1 234566889999999643 23455799999999999999999999996
No 19
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=5.6e-13 Score=106.28 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------EEEEecccc------C-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------IWVVVSKEL------K- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------~~v~v~~~~------~- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ....+.++. +
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 34345788999999999999999999999999999999998777775321 0 011222211 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012245677888885321 2344699999999999999999999996
No 20
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.6e-13 Score=104.25 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=78.8
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-E--------------EE----------Ee
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-I--------------WV----------VV 186 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-~--------------~v----------~v 186 (237)
|....+.++++.+..|+.+-|.|+||+|||||+++|+|...+..|+..+. . |+ ++
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 44467888899999999999999999999999999999998888865441 0 00 11
Q ss_pred cccc---------CHHHHHHHHHHHCCCCCCCc----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 187 SKEL---------KLERIQEDIGKKIRLPTDSW----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 187 ~~~~---------~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
-++. ....-+.+.+..+|+..-.. ..+.|+|++..|++....++.|.|||+
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE 156 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE 156 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecC
Confidence 1100 11334566778888754322 234599999999999999999999996
No 21
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.40 E-value=1.8e-13 Score=114.76 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=77.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EE----------EEEecccc------C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VI----------WVVVSKEL------K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~----------~v~v~~~~------~ 191 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .+ ...+.+.. +
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 44455788999999999999999999999999999999998788885322 00 01122211 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 012345678888885321 2344599999999999999999999996
No 22
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.9e-13 Score=101.85 Aligned_cols=103 Identities=22% Similarity=0.339 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------------EEEEEecccc---
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------------VIWVVVSKEL--- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------------~~~v~v~~~~--- 190 (237)
..+++++..+..|+.+.++||+|||||||+++++|...|..|.... ..|.++-++.
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafg 98 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG 98 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHH
Confidence 5899999999999999999999999999999999999888885432 4566554432
Q ss_pred ---------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..+++...|+.... +..++|++++.-|+++|.-.|.+|+||+
T Consensus 99 L~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 99 LQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 1245667788888886543 3456799999999999999999999996
No 23
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.39 E-value=3e-13 Score=107.69 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-E-----------EEEeccc----c---C-
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-I-----------WVVVSKE----L---K- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-~-----------~v~v~~~----~---~- 191 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . + -..+.+. + +
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 45788999999999999999999999999999999998777775321 0 0 0111111 0 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++... ....++|++++..|+++|..++.+|+||+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 01223457778887531 12344599999999999999999999996
No 24
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.39 E-value=1.1e-12 Score=104.00 Aligned_cols=104 Identities=21% Similarity=0.163 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---E--------EEEEecccc-------C----
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---V--------IWVVVSKEL-------K---- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~--------~~v~v~~~~-------~---- 191 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++. +
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 45788899999999999999999999999999999998788885421 0 011122210 0
Q ss_pred ----------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 152 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 012456778888885322 1234599999999999999999999996
No 25
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.38 E-value=7.8e-13 Score=98.82 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE-------------------------EEEe
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI-------------------------WVVV 186 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~-------------------------~v~v 186 (237)
+...+++++++.+..|+.++|.||+|||||||++++++..++..|+.-+.- --+|
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 445678999999999999999999999999999999999989888643310 0011
Q ss_pred cccc----------CHHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 187 SKEL----------KLERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 187 ~~~~----------~~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.++. .......+++++++++... ...++|+.++..|.+.|...|.+|+||+
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 1110 1234567888999886432 2445799999999999999999999996
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.38 E-value=5.7e-13 Score=102.35 Aligned_cols=104 Identities=24% Similarity=0.278 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--------------EEEEecc-----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--------------IWVVVSK----------- 188 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--------------~~v~v~~----------- 188 (237)
...++++++....|++++|.|+||+||||++++|+....|.+|....- +-|...+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 348999999999999999999999999999999999998998854321 1111111
Q ss_pred cc------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 EL------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 ~~------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ..+.....+.+.|++.... -..+.|++++..||++|.++|.++|||+
T Consensus 95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 00 1233445566667664211 1233589999999999999999999996
No 27
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=7.5e-13 Score=106.07 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-------------EEEEecccc------C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-------------IWVVVSKEL------K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-------------~~v~v~~~~------~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+. ....+.++. +
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 444457889999999999999999999999999999999987777743210 001122211 1
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 90 GWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012345677888885321 2334699999999999999999999996
No 28
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.37 E-value=1.5e-12 Score=101.96 Aligned_cols=106 Identities=19% Similarity=0.155 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----E-----------EEEEecccc-----
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----V-----------IWVVVSKEL----- 190 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~-----------~~v~v~~~~----- 190 (237)
+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ....+.++.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 3445788999999999999999999999999999999998777774321 0 001222211
Q ss_pred --C---------------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K---------------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~---------------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ . ......+++.+++.... ...++|++++..|+++|..++.+||||+
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 0 11234567777875321 1234599999999999999999999996
No 29
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=5.8e-13 Score=108.51 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------------------EEEE
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------------------VIWV 184 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------------------~~~v 184 (237)
...+++++..+..|+++||+|.+|+|||||++.|.+...|.+|..-+ ..--
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 35788999999999999999999999999999999999898884321 1111
Q ss_pred Eecccc------------CHHHHHHHHHHHCCCCCCCc----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 VVSKEL------------KLERIQEDIGKKIRLPTDSW----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 ~v~~~~------------~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+|.++. .......++++.+|+++... ..++|++|+..||++|.++|.+|+.|+
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 222211 23445677899999975433 234699999999999999999999996
No 30
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.37 E-value=9.3e-13 Score=105.01 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------EEEEEecccc--------C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------VIWVVVSKEL--------K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------~~~v~v~~~~--------~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..++ .++. +
T Consensus 9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v--~q~~~~~~~~~~t 86 (213)
T cd03235 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYV--PQRRSIDRDFPIS 86 (213)
T ss_pred ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEe--ccccccccCCCCc
Confidence 34345788999999999999999999999999999999998777775321 1111 1110 0
Q ss_pred ----------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11234567778887521 12344599999999999999999999996
No 31
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.37 E-value=9.3e-13 Score=105.34 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc-----
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL----- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~----- 190 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 35788999999999999999999999999999999998777774311 0011111110
Q ss_pred -C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 0 012345678888885321 2344599999999999999999999996
No 32
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=9.4e-13 Score=105.52 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-------EEEEeccc------cCH------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-------IWVVVSKE------LKL------ 192 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-------~~v~v~~~------~~~------ 192 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ . ....+.+. .+.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 34788899999999999999999999999999999998777775321 0 00111211 010
Q ss_pred ------------HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ------------ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ------------~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....++++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 1234567788887532 12344699999999999999999999996
No 33
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2.7e-12 Score=117.79 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=80.0
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEEEeccc----c----C-------
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWVVVSKE----L----K------- 191 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v~v~~~----~----~------- 191 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. -..++.+. . +
T Consensus 321 ~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~ 400 (638)
T PRK10636 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLAR 400 (638)
T ss_pred EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHH
Confidence 3555568999999999999999999999999999999999987888865331 11122221 0 0
Q ss_pred -----HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..++..+++... ....++|++++..|+++|..++.+||||+
T Consensus 401 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 401 LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11234567888888531 12344699999999999999999999996
No 34
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=2.8e-12 Score=96.47 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=86.3
Q ss_pred cCcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------------EEE
Q 044827 127 ERTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------------VIW 183 (237)
Q Consensus 127 ~~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------------~~~ 183 (237)
.+.+||...-..++++.+..|++++|||.+|+|||||++.|.+...+..|...+ .-|
T Consensus 12 lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeW 91 (258)
T COG4107 12 LSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91 (258)
T ss_pred hhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhcc
Confidence 356899999999999999999999999999999999999999999888886544 345
Q ss_pred EEecccc---------------------------CHHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCc
Q 044827 184 VVVSKEL---------------------------KLERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKF 231 (237)
Q Consensus 184 v~v~~~~---------------------------~~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~ 231 (237)
-.|.+++ +........++...++... ..-++|++++..|++-|.+.|.
T Consensus 92 G~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~Pr 171 (258)
T COG4107 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPR 171 (258)
T ss_pred ceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCc
Confidence 4444432 1233445567776665322 2234699999999999999999
Q ss_pred EEEecC
Q 044827 232 LLLLDD 237 (237)
Q Consensus 232 LlvLDd 237 (237)
|+++|+
T Consensus 172 LvfMDE 177 (258)
T COG4107 172 LVFMDE 177 (258)
T ss_pred eEEecC
Confidence 999996
No 35
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.37 E-value=6.4e-13 Score=102.61 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=65.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE--EEEeccccCHHHHHHHHHHHCCCCC
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI--WVVVSKELKLERIQEDIGKKIRLPT 207 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~--~v~v~~~~~~~~~~~~il~~~~~~~ 207 (237)
.||....+.++ ..+..|++++|+|+||+|||||+++|+|..++..|.+.+.- ...+.+..
T Consensus 9 ~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~----------------- 70 (177)
T cd03222 9 RYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYI----------------- 70 (177)
T ss_pred EECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccC-----------------
Confidence 35554455553 67788999999999999999999999999888888754311 11111111
Q ss_pred CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 208 DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+.|++++..|++++..++.+++||+
T Consensus 71 ---~LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 71 ---DLSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 155789999999999999999999996
No 36
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.36 E-value=1.8e-12 Score=106.27 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=78.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------EEEEEecccc------C--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------VIWVVVSKEL------K-- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------~~~v~v~~~~------~-- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..++ .+.. +
T Consensus 22 ~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v--~q~~~l~~~~tv~ 99 (257)
T PRK11247 22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM--FQDARLLPWKKVI 99 (257)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEE--ecCccCCCCCcHH
Confidence 55556889999999999999999999999999999999998777775421 1121 1110 1
Q ss_pred ----------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 100 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE 159 (257)
T PRK11247 100 DNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159 (257)
T ss_pred HHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 123345678888885321 2344599999999999999999999996
No 37
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.36 E-value=8.5e-13 Score=104.00 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=81.7
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEE--------
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIW-------- 183 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~-------- 183 (237)
.-||...++++++..+..|++.+|+|++|+|||||++.|.|..+|.+|...+ .-|
T Consensus 16 ~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3478889999999999999999999999999999999999999999985432 001
Q ss_pred ----EEecccc-------------CHHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 184 ----VVVSKEL-------------KLERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 184 ----v~v~~~~-------------~~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+|.++. -..++...-++..|++.. ..+.++|+++|..||+++.-.|.||++|+
T Consensus 96 LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE 171 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE 171 (263)
T ss_pred cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC
Confidence 0111110 012233334566787654 12345799999999999999999999996
No 38
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.9e-13 Score=107.41 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=80.2
Q ss_pred ccc-chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EE--------------EEecccc
Q 044827 129 TIV-GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IW--------------VVVSKEL 190 (237)
Q Consensus 129 ~~~-g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~--------------v~v~~~~ 190 (237)
..| |....+++|+..+..|+.|+|+|++|+|||||++.|.+...+..|..... +| -.+.+.+
T Consensus 11 k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~ 90 (258)
T COG3638 11 KTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQF 90 (258)
T ss_pred eecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccC
Confidence 345 78889999999999999999999999999999999999887777743220 00 0122211
Q ss_pred ------------------------------C--HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEE
Q 044827 191 ------------------------------K--LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLL 234 (237)
Q Consensus 191 ------------------------------~--~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~Llv 234 (237)
+ .....-+.++++|+.+.. ...++|+|+|..||++|..++.+|+
T Consensus 91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiIL 170 (258)
T COG3638 91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL 170 (258)
T ss_pred CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEe
Confidence 1 122334567778875322 2455799999999999999999999
Q ss_pred ecC
Q 044827 235 LDD 237 (237)
Q Consensus 235 LDd 237 (237)
.|+
T Consensus 171 ADE 173 (258)
T COG3638 171 ADE 173 (258)
T ss_pred cCC
Confidence 986
No 39
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.36 E-value=7.7e-13 Score=105.54 Aligned_cols=104 Identities=22% Similarity=0.221 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------ 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------ 190 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.++.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 35788999999999999999999999999999999998777775311 0 001112210
Q ss_pred C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0 012345677788875321 2344599999999999999999999996
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.36 E-value=7.9e-13 Score=105.63 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------~ 191 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++. +
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 4688889999999999999999999999999999998777775321 0 001112210 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 164 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADE 164 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 112345677888875321 2344599999999999999999999996
No 41
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.35 E-value=7.4e-13 Score=113.82 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=85.2
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc---------------------------ceE
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN---------------------------FDI 180 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~---------------------------f~~ 180 (237)
+..||.-...+++++.+..|++.++.|.||+|||||++++||..+|.+|. |..
T Consensus 11 tK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred EEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccc
Confidence 34577777889999999999999999999999999999999999998883 332
Q ss_pred EEEEEecccc---------------CHHHHHHHHHHHCCCCCCCcC----CCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 181 VIWVVVSKEL---------------KLERIQEDIGKKIRLPTDSWK----NRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 181 ~~~v~v~~~~---------------~~~~~~~~il~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.-.+|.++. .....+..+.++.|++-+... .+-|+||+..|-++|...+.+||||+
T Consensus 91 v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE 166 (501)
T COG3845 91 VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE 166 (501)
T ss_pred ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC
Confidence 3223333321 134566788899998754332 23389999999999999999999996
No 42
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.5e-12 Score=105.39 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEE-Eecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWV-VVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v-~v~~~~--- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ...+ .+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 34345788899999999999999999999999999999998777774321 0001 122210
Q ss_pred ---CH-------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---KL-------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~~-------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE 162 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 00 12234567788875321 1244599999999999999999999996
No 43
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.35 E-value=2e-12 Score=103.18 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=77.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEeccc------cC
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKE------LK 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~------~~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..++ .+. .+
T Consensus 21 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~--~q~~~~~~~~t 98 (214)
T PRK13543 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL--GHLPGLKADLS 98 (214)
T ss_pred cCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEe--ecCcccccCCc
Confidence 44446889999999999999999999999999999999998777785422 1122 111 01
Q ss_pred ---------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|++++..++.+|+||+
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 99 TLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 122335677778875321 1334589999999999999999999996
No 44
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.35 E-value=1.8e-12 Score=103.36 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------EEEEEecccc------C-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------VIWVVVSKEL------K- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------~~~v~v~~~~------~- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ .....+.+.. +
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 44445789999999999999999999999999999999998777774211 0011122210 0
Q ss_pred --------------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ...+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 90 YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 12335567888875211 2345699999999999999999999996
No 45
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.35 E-value=1.9e-12 Score=108.68 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=78.5
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE------------E-EEEecccc------
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV------------I-WVVVSKEL------ 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~------------~-~v~v~~~~------ 190 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+. . -..+.++.
T Consensus 16 ~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred EECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 4565668999999999999999999999999999999999988888853220 0 01112210
Q ss_pred C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .......+++.+++.... ...+.|++++..|+++|..+|.+|+||+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0 012334667778875321 1234589999999999999999999996
No 46
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.9e-12 Score=106.06 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--E-------EEEecccc------C----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--I-------WVVVSKEL------K---- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--~-------~v~v~~~~------~---- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. . ...+.+.. +
T Consensus 11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHH
Confidence 343457888999999999999999999999999999999987777754220 0 01112210 0
Q ss_pred -----------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .....++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 154 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 12245677888875321 2344599999999999999999999996
No 47
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.35 E-value=1.6e-12 Score=110.57 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=78.8
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-------------EEEEeccc------c
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-------------IWVVVSKE------L 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-------------~~v~v~~~------~ 190 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. ....+.++ .
T Consensus 50 ~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 4666678999999999999999999999999999999999988888853220 00111111 0
Q ss_pred C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .......+++.+++.... ...+.|++++..|+++|..+|.+||||+
T Consensus 130 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE 198 (340)
T PRK13536 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE 198 (340)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 1 012234567778875321 1234599999999999999999999996
No 48
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.2e-12 Score=112.02 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc---------
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL--------- 190 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~--------- 190 (237)
|....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .. -..+.+++
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 4445788899999999999999999999999999999998888885321 00 01112211
Q ss_pred ------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE 160 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 123346778888885322 2344699999999999999999999996
No 49
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=2e-12 Score=106.77 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----E-------------EEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----V-------------IWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~-------------~~v~v~~~~-- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ....+.+..
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 56666788999999999999999999999999999999998777774321 0 001112210
Q ss_pred ----CH------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----KL------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~~------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 10 12234577788875321 2334599999999999999999999996
No 50
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=6.1e-13 Score=105.39 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE-----------EEEeccc------cC
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI-----------WVVVSKE------LK 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~-----------~v~v~~~------~~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. -..+.+. .+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 34445788899999999999999999999999999999998788875321 00 0011111 00
Q ss_pred ---------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+|+.... ...++|++++..|++++..++.+++||+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 155 (204)
T PRK13538 91 ALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155 (204)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 112345678888875321 2334589999999999999999999996
No 51
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.34 E-value=2.1e-12 Score=108.43 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=76.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEecccc------C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKEL------K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~~------~ 191 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .....+.++. +
T Consensus 14 ~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45556789999999999999999999999999999999998777775321 0011122211 1
Q ss_pred H------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 L------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......+++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 94 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 94 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 11234567777775321 2334599999999999999999999996
No 52
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.34 E-value=2.2e-12 Score=103.38 Aligned_cols=104 Identities=19% Similarity=0.142 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EE----------EEEecccc------C---
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VI----------WVVVSKEL------K--- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~----------~v~v~~~~------~--- 191 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+ -..+.++. +
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 45789999999999999999999999999999999998787785421 00 01112110 0
Q ss_pred ------------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .....++++.+++.... ...+.|++++..|+++|..+|.+|+||+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 0 12235677778875321 2334599999999999999999999996
No 53
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.34 E-value=1.4e-12 Score=106.04 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---E-------------E-EEEecccc-----
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---V-------------I-WVVVSKEL----- 190 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~-------------~-~v~v~~~~----- 190 (237)
....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . . ...+.++.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 345789999999999999999999999999999999998777774311 0 0 00111110
Q ss_pred -C--------------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K--------------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~--------------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 171 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 01123556777877531 12345699999999999999999999996
No 54
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.34 E-value=8.2e-13 Score=104.73 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------------EEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------------WVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------------~v~v~~~~-- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++++|..++..|.+.+ .. -..+.+..
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 34345788899999999999999999999999999999998777774311 00 00111110
Q ss_pred ----C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 012345677888874321 2334589999999999999999999996
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.2e-12 Score=104.19 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE----------EEEEeccc------cC----
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV----------IWVVVSKE------LK---- 191 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~----------~~v~v~~~------~~---- 191 (237)
+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+- .-..+.++ .+
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHH
Confidence 33346788888999999999999999999999999999987777754210 00111211 01
Q ss_pred --------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 012345677788875321 2344589999999999999999999996
No 56
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=2.4e-12 Score=104.78 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=79.7
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc--eEEEEE----------------------
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF--DIVIWV---------------------- 184 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f--~~~~~v---------------------- 184 (237)
..+|.-..+++|+..+.+|+.+++.||||+|||||+++|+|...+..|.. +-..|.
T Consensus 10 ~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 10 KRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred hhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 34666677778999999999999999999999999999999998888853 222221
Q ss_pred ---Eeccc--------------cCHHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 ---VVSKE--------------LKLERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 ---~v~~~--------------~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+|.++ ........++++.+.+..- ....++|++++..|+++|.-.|.+|+||+
T Consensus 90 ~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 90 PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 11111 0123344556666655432 22345699999999999999999999996
No 57
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.34 E-value=1.4e-12 Score=101.28 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCH------HHHHHHHHHHCCC
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKL------ERIQEDIGKKIRL 205 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~------~~~~~~il~~~~~ 205 (237)
+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+.- ..+.. .+. ...+.++++.+++
T Consensus 10 ~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g-~~~~~-~~~~~~~~~i~~~~q~l~~~gl 87 (180)
T cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG-KDLAS-LSPKELARKIAYVPQALELLGL 87 (180)
T ss_pred CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EECCc-CCHHHHHHHHhHHHHHHHHcCC
Confidence 333478888899999999999999999999999999999878888643211 11111 111 1122336778887
Q ss_pred CCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 206 PTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 206 ~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.... ...++|++++..|++++..+|.+++||+
T Consensus 88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5321 2344599999999999999999999996
No 58
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.33 E-value=8.8e-13 Score=104.26 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEeccc------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKE------ 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~------ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..+ +.+.
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~--~~q~~~~~~~ 87 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY--LGHAPGIKTT 87 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE--eccccccCCC
Confidence 34445788999999999999999999999999999999998777775421 111 1111
Q ss_pred cC------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 LK------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~~------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ .......+++.+++.... ...++|++++..|++++..++.+||||+
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 151 (201)
T cd03231 88 LSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151 (201)
T ss_pred cCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01 123446677888885321 1234589999999999999999999996
No 59
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.33 E-value=8.7e-13 Score=105.51 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE------------EEE-Eeccc------cC----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV------------IWV-VVSKE------LK---- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~------------~~v-~v~~~------~~---- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. -.+ .+.+. .+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 47888999999999999999999999999999999987777753210 000 11111 01
Q ss_pred --------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 162 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE 162 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012335577888875311 1344589999999999999999999996
No 60
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.33 E-value=2.1e-12 Score=114.81 Aligned_cols=110 Identities=24% Similarity=0.230 Sum_probs=83.5
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE--E-EEecccc--C-----------
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI--W-VVVSKEL--K----------- 191 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~--~-v~v~~~~--~----------- 191 (237)
+..||....+++++..+..|+.|||||.||+|||||+++|.|...+..|++.... . .++.|+. +
T Consensus 10 s~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 10 SLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred EEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHh
Confidence 3457888899999999999999999999999999999999999988888765432 1 1233321 1
Q ss_pred -----------------------------------------HHHHHHHHHHHCCCCCC--C-cCCCCHHHHHHHHHHHhh
Q 044827 192 -----------------------------------------LERIQEDIGKKIRLPTD--S-WKNRSIENEARDIYNILR 227 (237)
Q Consensus 192 -----------------------------------------~~~~~~~il~~~~~~~~--~-~~~~~~~~~~~~l~~~l~ 227 (237)
....+..++..+|++.. . ...++|++.+..||++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~ 169 (530)
T COG0488 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169 (530)
T ss_pred hhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHh
Confidence 01233456667777643 1 233468999999999999
Q ss_pred cCCcEEEecC
Q 044827 228 KKKFLLLLDD 237 (237)
Q Consensus 228 ~~~~LlvLDd 237 (237)
.+|.+|+||+
T Consensus 170 ~~pDlLLLDE 179 (530)
T COG0488 170 EEPDLLLLDE 179 (530)
T ss_pred cCCCEEEEcC
Confidence 9999999996
No 61
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.33 E-value=3e-12 Score=103.38 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------E-EEEecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------I-WVVVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~-~v~v~~~~----- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ . . ...+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 34445788999999999999999999999999999999998777774311 0 0 01122211
Q ss_pred -CH------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -KL------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~~------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ...+..+++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 90 LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 00 11234677778775321 2344699999999999999999999996
No 62
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.7e-12 Score=99.42 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------------------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------------------ 180 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------------------ 180 (237)
+.....+++++..+..|++.+|+||||+|||||++.++|...+..|...+
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45567899999999999999999999999999999999999777774322
Q ss_pred EEEE----------EeccccCHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhc------CCcEEEecC
Q 044827 181 VIWV----------VVSKELKLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRK------KKFLLLLDD 237 (237)
Q Consensus 181 ~~~v----------~v~~~~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~------~~~LlvLDd 237 (237)
.+|- .-++......+....+...++..-. ...++|++++..|++.|.. .+..|+||+
T Consensus 91 tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDE 167 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE 167 (259)
T ss_pred EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecC
Confidence 1110 0111112345677788887765321 2345799999999999863 233678885
No 63
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.33 E-value=1.7e-12 Score=104.45 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-------------EEE-Eecccc-----C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-------------IWV-VVSKEL-----K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-------------~~v-~v~~~~-----~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. ..+ .+.++. +
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~t 96 (225)
T PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDT 96 (225)
T ss_pred eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccccc
Confidence 455568899999999999999999999999999999999987777743210 001 111110 0
Q ss_pred ----------------HHHHHHHHHHHCCCCCC----C-cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------------LERIQEDIGKKIRLPTD----S-WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------------~~~~~~~il~~~~~~~~----~-~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++... . ...++|++++..|+++|..++.+||||+
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 97 VYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred HHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11234567888888421 1 2234589999999999999999999996
No 64
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.33 E-value=8.9e-13 Score=98.69 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--EEE-EeccccCHHHHHHHHHHHCCCCCCCcC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--IWV-VVSKELKLERIQEDIGKKIRLPTDSWK 211 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--~~v-~v~~~~~~~~~~~~il~~~~~~~~~~~ 211 (237)
..++++++.+..|++++|+|+||+|||||++.|+|..++..|.+.+. ..+ .+.+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~----------------------- 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ----------------------- 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-----------------------
Confidence 46777888899999999999999999999999999987878864321 111 1111
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 212 NRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 212 ~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.|++++..|++++..++.+++||+
T Consensus 71 lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 71 LSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45789999999999999999999996
No 65
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.33 E-value=2.3e-12 Score=101.62 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-----------EEEEecccc------C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-----------IWVVVSKEL------K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-----------~~v~v~~~~------~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||++.|+|..++..|.+.+ . ....+.+.. +
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 34445788899999999999999999999999999999998777775321 0 001122210 1
Q ss_pred H--------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 L--------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~--------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......+++.+++.... ...++|++++..|++++..++.+||||+
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 153 (198)
T TIGR01189 90 ALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE 153 (198)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 12345667778875321 2234589999999999999999999996
No 66
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.33 E-value=4.8e-12 Score=95.84 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=69.6
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------------EEEEEecccc---------
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------------VIWVVVSKEL--------- 190 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------------~~~v~v~~~~--------- 190 (237)
+..+++++|+|++|+|||||+++|+|...|.+|...+ ....+|.++.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk 101 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLK 101 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccc
Confidence 4567999999999999999999999999888885432 1112233221
Q ss_pred ---CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
........++.+.|+.... ...++|++++..|+++|...+.+++||+
T Consensus 102 L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 102 LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 1234557788888886432 2345699999999999999999999996
No 67
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1e-12 Score=101.88 Aligned_cols=110 Identities=22% Similarity=0.223 Sum_probs=74.7
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc-ceEEEEE--------------------Ee
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN-FDIVIWV--------------------VV 186 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~-f~~~~~v--------------------~v 186 (237)
+..||....+++|+..+..+.|.+++||+|||||||++.+........+. .+..++. .|
T Consensus 14 ~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMV 93 (253)
T COG1117 14 NLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMV 93 (253)
T ss_pred eEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheee
Confidence 45789999999999999999999999999999999999998776433320 1111100 11
Q ss_pred cccc-----------------------CHHHHHHHHHHHCCCC--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 187 SKEL-----------------------KLERIQEDIGKKIRLP--------TDSWKNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 187 ~~~~-----------------------~~~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
.|.+ ...++...-++...+- ......++|+||+..||++|.-+|.+|+|
T Consensus 94 FQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 94 FQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred ccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 1111 0122233333333331 22234557999999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 174 DE 175 (253)
T COG1117 174 DE 175 (253)
T ss_pred cC
Confidence 96
No 68
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.32 E-value=3.6e-12 Score=97.72 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE---EEEeccccC--HHHHHHHHHHHCCCCCCC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI---WVVVSKELK--LERIQEDIGKKIRLPTDS 209 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~---~v~v~~~~~--~~~~~~~il~~~~~~~~~ 209 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++..|.+.+.. -..+.++.. ...+...+ ... ..
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl----~~~-~~ 89 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQL----IYP-WD 89 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHh----hcc-CC
Confidence 467888899999999999999999999999999999878888754311 123344321 11222222 110 12
Q ss_pred cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 210 WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...++|++++..|++++..++.+++||+
T Consensus 90 ~~LS~G~~~rv~laral~~~p~~lllDE 117 (166)
T cd03223 90 DVLSGGEQQRLAFARLLLHKPKFVFLDE 117 (166)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3456799999999999999999999996
No 69
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=2.2e-12 Score=110.04 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------C
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------K 191 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~ 191 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. -..+.+++ +
T Consensus 15 ~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94 (351)
T ss_pred EECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCC
Confidence 355555688899999999999999999999999999999999888885321 00 01122211 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 95 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE 162 (351)
T PRK11432 95 LGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE 162 (351)
T ss_pred HHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 123445677888875321 2344699999999999999999999996
No 70
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.32 E-value=7.4e-13 Score=104.55 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=83.6
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE------------EE----------E
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI------------WV----------V 185 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~------------~v----------~ 185 (237)
+..||....++++++.+..|++.+++|+||+||||++++|.+..++.+|+..+.- +. +
T Consensus 9 tK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMT 88 (300)
T ss_pred hhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCc
Confidence 4568889999999999999999999999999999999999999988888765411 10 1
Q ss_pred eccc------------cCHHHHHHHHHHHCCCCCCCcC----CCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 186 VSKE------------LKLERIQEDIGKKIRLPTDSWK----NRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 186 v~~~------------~~~~~~~~~il~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
|-+. ......+...++++++...... .+-|.||...+..++.++|-|||||+
T Consensus 89 v~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE 156 (300)
T COG4152 89 VEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE 156 (300)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence 1100 0223455678888888644322 12388888899999999999999996
No 71
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.32 E-value=2.8e-12 Score=103.87 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-----------EEEEecccc------C-
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-----------IWVVVSKEL------K- 191 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-----------~~v~v~~~~------~- 191 (237)
+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++. +
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 3345788889999999999999999999999999999998777775321 0 001122211 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+|+.... ...++|++++..|+++|..+|.+|+||+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012235567778875321 2344589999999999999999999996
No 72
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.32 E-value=3.7e-12 Score=103.17 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---E---------EEE-Eec-cc------c
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---V---------IWV-VVS-KE------L 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~---------~~v-~v~-~~------~ 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ..+ .+. +. .
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 45556889999999999999999999999999999999998777775421 0 011 111 11 0
Q ss_pred CH------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 KL------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~~------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ......+++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 10 11234566777775311 1234589999999999999999999996
No 73
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.6e-12 Score=105.62 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----E------------EEEEecccc------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----V------------IWVVVSKEL------ 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~------------~~v~v~~~~------ 190 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ....+.++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 45788999999999999999999999999999999998777774311 0 001111110
Q ss_pred CH--------------------------HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 KL--------------------------ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~~--------------------------~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++... ....++|++++..|+++|..++.+||||+
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 170 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 1123456777887531 12345699999999999999999999996
No 74
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.32 E-value=2.1e-12 Score=110.35 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=78.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL-------- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~-------- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ .. -..+.+++
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 44445678888999999999999999999999999999999787775322 00 01111211
Q ss_pred ----------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE 160 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE 160 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0123456788888886422 2344699999999999999999999996
No 75
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.3e-12 Score=106.09 Aligned_cols=107 Identities=19% Similarity=0.160 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------EEEEecccc------CH
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------IWVVVSKEL------KL 192 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------~~v~v~~~~------~~ 192 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.++. +.
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 34445788999999999999999999999999999999998777774311 0 001111110 00
Q ss_pred ----------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ----------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ----------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+..+++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 162 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11235567788875311 2345699999999999999999999996
No 76
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.32 E-value=2.6e-12 Score=109.98 Aligned_cols=107 Identities=20% Similarity=0.220 Sum_probs=78.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCC--CcceE--EE----------EEEecccc------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGG--HNFDI--VI----------WVVVSKEL------ 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~--~~f~~--~~----------~v~v~~~~------ 190 (237)
||....+++++..+..|++++|+|+||+|||||+++|+|..++.. |.+.+ .. ...+.+++
T Consensus 15 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred ECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 454457888999999999999999999999999999999988877 75321 00 01111111
Q ss_pred ---------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 122356678888886422 2334599999999999999999999996
No 77
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.31 E-value=6.7e-13 Score=111.28 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---E----------EEEEecccc------C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---V----------IWVVVSKEL------K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~----------~~v~v~~~~------~ 191 (237)
||....++++++.+..|++++|+|+||+|||||+++++|..++..|...+ . ....+.+.. +
T Consensus 12 ~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45455788899999999999999999999999999999998788885321 0 011111110 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+|+.... ...++|++++..|+++|..+|.+|+||+
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE 159 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012345677888886322 1234599999999999999999999996
No 78
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.31 E-value=1.4e-12 Score=105.56 Aligned_cols=105 Identities=21% Similarity=0.202 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v~v~~~~--- 190 (237)
|+....+++++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+ ..+ +.+..
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~--v~q~~~l~ 87 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR--TFQIPRLF 87 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE--Eecccccc
Confidence 33334788899999999999999999999999999999998777774311 111 11110
Q ss_pred ---C----------------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 191 ---K----------------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 191 ---~----------------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
+ ......++++.+++.... ...++|++++..|+++|..+|.+|+|
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 167 (236)
T cd03219 88 PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLL 167 (236)
T ss_pred cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 011345677778875321 12345999999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 168 DE 169 (236)
T cd03219 168 DE 169 (236)
T ss_pred cC
Confidence 96
No 79
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.31 E-value=3e-12 Score=101.66 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE------------EEEEecccc------CH
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV------------IWVVVSKEL------KL 192 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~------------~~v~v~~~~------~~ 192 (237)
|+....++++++.+..|++++|+|+||+|||||++.|+|..++.+|.+.+. .-..+.++. +.
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 333457888899999999999999999999999999999987777753220 001122211 00
Q ss_pred --------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 --------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 --------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 152 (208)
T cd03268 90 RENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152 (208)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 12345677888875321 2344589999999999999999999996
No 80
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.31 E-value=5e-12 Score=101.34 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~------ 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 4788889999999999999999999999999999998777774311 0011122210
Q ss_pred C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0 011235677888885321 2344599999999999999999999996
No 81
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.31 E-value=3.7e-12 Score=109.54 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------C-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------K- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .. ...+.+++ +
T Consensus 13 ~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 44445788899999999999999999999999999999998777775321 00 01122211 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 012345678888885321 2344699999999999999999999996
No 82
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=3.7e-12 Score=98.13 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCC-------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLP-------T 207 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~-------~ 207 (237)
..++++++.+..|++++|+|+||+|||||++.|+|..++..|.+.+.-. .+.. ...... + ..++.- .
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~-~~~~-~~~~~~-~---~~i~~~~~~~~~~~ 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGV-DLRD-LDLESL-R---KNIAYVPQDPFLFS 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCE-Ehhh-cCHHHH-H---hhEEEEcCCchhcc
Confidence 4788889999999999999999999999999999998788885422100 0000 000000 0 001100 0
Q ss_pred CC---cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 208 DS---WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 208 ~~---~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. .-.+.|++++..|++++..++.+|+||+
T Consensus 90 ~t~~e~lLS~G~~~rl~la~al~~~p~llllDE 122 (171)
T cd03228 90 GTIRENILSGGQRQRIAIARALLRDPPILILDE 122 (171)
T ss_pred chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 00 0045689999999999999999999996
No 83
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.1e-12 Score=104.45 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-------------EEEEecccc------CH
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-------------IWVVVSKEL------KL 192 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-------------~~v~v~~~~------~~ 192 (237)
+....++++++.+..| +++|+|+||+|||||+++|+|..++..|.+.+. ....+.++. +.
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 3345788999999998 999999999999999999999987777753210 001122210 10
Q ss_pred ------------------HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ------------------ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ------------------~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1223556777887531 12345699999999999999999999996
No 84
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.6e-12 Score=104.99 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E--------------E-EEEecccc------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V--------------I-WVVVSKEL------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~--------------~-~v~v~~~~------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ . . -..+.++. +
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 5788899999999999999999999999999999999777775321 0 0 01111210 0
Q ss_pred H------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 L------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ...+.++++.+++.... ...++|++++..|+++|..++.+||||+
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE 166 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 0 11235567778875321 1234589999999999999999999996
No 85
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=7.5e-12 Score=101.68 Aligned_cols=107 Identities=21% Similarity=0.127 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc-----C
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL-----K 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~-----~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.++. +
T Consensus 13 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~t 92 (241)
T PRK14250 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGT 92 (241)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhh
Confidence 33345788899999999999999999999999999999998777775321 0001122211 0
Q ss_pred --------------HHHHHHHHHHHCCCCCC----C-cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------------LERIQEDIGKKIRLPTD----S-WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------------~~~~~~~il~~~~~~~~----~-~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++... . ...++|++++..|++++..+|.+|+||+
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 93 VKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred HHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11234567788888521 1 2334599999999999999999999996
No 86
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.30 E-value=1.9e-12 Score=110.04 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-----------------EEEEecccc------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-----------------IWVVVSKEL------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-----------------~~v~v~~~~------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|++..++.+|.+.+. .-..+.+.+ +
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 47899999999999999999999999999999999998877753210 001111211 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+|+.... ...++|++++..|+++|..+|.+|+||+
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE 166 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 112345678888885422 1334599999999999999999999996
No 87
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.30 E-value=2.6e-12 Score=109.85 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=78.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~-- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+.+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45555788899999999999999999999999999999999888874321 0111222211
Q ss_pred ----C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 123345678888885321 2334699999999999999999999996
No 88
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=4.5e-12 Score=114.22 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=78.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----EEEEEecccc------C--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----VIWVVVSKEL------K-------- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~~~v~v~~~~------~-------- 191 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ ..++ .+.. +
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~--~q~~~~~~~~tv~e~l~~~ 88 (530)
T PRK15064 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKL--RQDQFAFEEFTVLDTVIMG 88 (530)
T ss_pred eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEE--eccCCcCCCCcHHHHHHHh
Confidence 55556889999999999999999999999999999999998777786432 1222 1110 0
Q ss_pred ------------------------------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHH
Q 044827 192 ------------------------------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYN 224 (237)
Q Consensus 192 ------------------------------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~ 224 (237)
.......+++.+|+... ....++|++++..|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~ 168 (530)
T PRK15064 89 HTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQ 168 (530)
T ss_pred hHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHH
Confidence 01234567788888531 1234569999999999
Q ss_pred HhhcCCcEEEecC
Q 044827 225 ILRKKKFLLLLDD 237 (237)
Q Consensus 225 ~l~~~~~LlvLDd 237 (237)
+|..+|.+|+||+
T Consensus 169 aL~~~p~lLlLDE 181 (530)
T PRK15064 169 ALFSNPDILLLDE 181 (530)
T ss_pred HHhcCCCEEEEcC
Confidence 9999999999996
No 89
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.1e-12 Score=106.46 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--------------EEEEecccc------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--------------IWVVVSKEL------ 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--------------~~v~v~~~~------ 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. .-..+.+..
T Consensus 21 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 21 VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 444467999999999999999999999999999999999987777743210 001111110
Q ss_pred C----------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K----------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~----------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .......+++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 173 (265)
T PRK10575 101 TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE 173 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 11234567777877421 12345699999999999999999999996
No 90
>PRK10908 cell division protein FtsE; Provisional
Probab=99.30 E-value=1.9e-12 Score=103.90 Aligned_cols=103 Identities=20% Similarity=0.122 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++. +
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 4688889999999999999999999999999999998777775321 0 001222211 0
Q ss_pred ---------------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......+++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE 163 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 11234577788875321 2344599999999999999999999996
No 91
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.29 E-value=4e-12 Score=102.58 Aligned_cols=100 Identities=24% Similarity=0.230 Sum_probs=70.8
Q ss_pred HHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E------EEEeccc------cCH----------
Q 044827 138 QKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I------WVVVSKE------LKL---------- 192 (237)
Q Consensus 138 ~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~------~v~v~~~------~~~---------- 192 (237)
+++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. + ...+.+. .+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 35667788899999999999999999999999987778854220 0 0111111 000
Q ss_pred ----------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ----------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ----------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.++++.+++.... ...++|++++..|+++|..++.+||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 140 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDE 140 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11245667778875311 2344599999999999999999999996
No 92
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.29 E-value=3.5e-12 Score=104.18 Aligned_cols=107 Identities=21% Similarity=0.153 Sum_probs=76.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEEEecccc--------C--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWVVVSKEL--------K-------- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v~v~~~~--------~-------- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. ....+.++. +
T Consensus 14 ~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~ 93 (251)
T PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLR 93 (251)
T ss_pred ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcc
Confidence 344457888889999999999999999999999999999987777754321 001111110 0
Q ss_pred ---HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..+++.+++... ....++|++++..|++++..+|.+|+||+
T Consensus 94 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 146 (251)
T PRK09544 94 PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146 (251)
T ss_pred ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01234566778887532 12334589999999999999999999996
No 93
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.29 E-value=1.4e-12 Score=104.78 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-EE-------E----Eecccc-----
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-IW-------V----VVSKEL----- 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-~~-------v----~v~~~~----- 190 (237)
-||....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ . .. . ++.+..
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~ 110 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGR 110 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHH
Confidence 356667889999999999999999999999999999999998777775321 0 00 0 110100
Q ss_pred ----CH---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----KL---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++.... ...++|++++..|++++..+|.+||||+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 111 LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01 11234566777774321 2334589999999999999999999996
No 94
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.29 E-value=2.9e-12 Score=103.17 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc-----ccCCCcceE------------------EEEEEec
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF-----CYGGHNFDI------------------VIWVVVS 187 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~-----~~~~~~f~~------------------~~~v~v~ 187 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|.. ++.+|.+.+ ..+ +.
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~--~~ 87 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGM--VF 87 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEE--Ee
Confidence 34445788899999999999999999999999999999998 677774311 111 11
Q ss_pred ccc-----C-------------------HHHHHHHHHHHCCCCCC---C---cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 188 KEL-----K-------------------LERIQEDIGKKIRLPTD---S---WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 188 ~~~-----~-------------------~~~~~~~il~~~~~~~~---~---~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++. + ....+.++++.+++... . ...++|++++..|+++|..++.+|+||+
T Consensus 88 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 167 (227)
T cd03260 88 QKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167 (227)
T ss_pred cCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 110 0 11234567788888532 1 2344599999999999999999999996
No 95
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.29 E-value=7.2e-12 Score=102.31 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----E-----------------EEEEecc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----V-----------------IWVVVSK 188 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~-----------------~~v~v~~ 188 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ....+.+
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 44445789999999999999999999999999999999998777775311 0 0011122
Q ss_pred cc------CH-------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 EL------KL-------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 ~~------~~-------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. +. ......+++.+++.... ...++|++++..|+++|..+|.+||||+
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDE 170 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDE 170 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 10 10 11234567777875321 2344699999999999999999999996
No 96
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.29 E-value=3.6e-12 Score=109.54 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL-------- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~-------- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. -..+.+++
T Consensus 24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 45445688899999999999999999999999999999999777775321 10 01112211
Q ss_pred -------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE 170 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 122345678888886322 2334699999999999999999999996
No 97
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.29 E-value=4.5e-12 Score=101.06 Aligned_cols=101 Identities=15% Similarity=0.024 Sum_probs=68.5
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce-EE-EEEEecc------ccCH---------------H
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD-IV-IWVVVSK------ELKL---------------E 193 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~-~~-~~v~v~~------~~~~---------------~ 193 (237)
++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+. +. ..+.+.+ ..+. .
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence 5677888999999999999999999999999999888888753 21 0111111 1111 1
Q ss_pred HHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 194 RIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 194 ~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....+...++++.. ....+.|++++..|++++..+|.+++||+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDE 130 (213)
T PRK15177 83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADG 130 (213)
T ss_pred HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 111222233344321 11234589999999999999999999996
No 98
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=7.4e-12 Score=101.21 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~------ 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.++.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 4688899999999999999999999999999999998777774311 0011122210
Q ss_pred C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+|+.... ...++|++++..|++++..+|.+|+||+
T Consensus 103 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 103 TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 012345678888885321 1234589999999999999999999996
No 99
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.29 E-value=8.2e-12 Score=114.62 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=74.3
Q ss_pred cchH--HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc----
Q 044827 131 VGQQ--ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL---- 190 (237)
Q Consensus 131 ~g~~--~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~---- 190 (237)
|+.+ ..+++++..+..|+.++|+|.+|+|||||+|++.|...|..|...+ .--..|.++.
T Consensus 481 y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~ 560 (709)
T COG2274 481 YGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS 560 (709)
T ss_pred eCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc
Confidence 4444 6899999999999999999999999999999999999998885422 0111222221
Q ss_pred --------------CHHHHHHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------KLERIQEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------~~~~~~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.+++ .+.+...|+. .....-++|++|+..|||+|..+|.+|+||+
T Consensus 561 gSI~eNi~l~~p~~~~e~i-~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDE 635 (709)
T COG2274 561 GSIRENIALGNPEATDEEI-IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE 635 (709)
T ss_pred CcHHHHHhcCCCCCCHHHH-HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 22222 2222222221 1112345699999999999999999999996
No 100
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.29 E-value=4.3e-12 Score=109.83 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=78.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~----- 190 (237)
||....++++++.+..|++++|+|+||+|||||++.|+|..++.+|...+ .+. .+.++.
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig-~v~q~~~l~~~ 91 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA-SVPQDTSLSFE 91 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE-EEccCCCCCCC
Confidence 55556788999999999999999999999999999999998777774321 010 111110
Q ss_pred ---------------------C--HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------------K--LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------------~--~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .......+++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 92 ~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE 165 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE 165 (402)
T ss_pred CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0 123456778888885321 2344599999999999999999999996
No 101
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.29 E-value=4.9e-12 Score=101.57 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------EEEEEecccc------CH-----
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------VIWVVVSKEL------KL----- 192 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------~~~v~v~~~~------~~----- 192 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+.. +.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 34678888999999999999999999999999999998778885421 0111122210 11
Q ss_pred ---------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ---------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ---------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 93 VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred HHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 12345677888885321 1234589999999999999999999996
No 102
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.29 E-value=2.5e-12 Score=102.44 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=75.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EE-------------EEEecccc----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VI-------------WVVVSKEL---- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~-------------~v~v~~~~---- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+ -..+.++.
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 34345788899999999999999999999999999999998777774321 00 00111110
Q ss_pred --C-------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K-------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~-------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 011235567778875311 2344599999999999999999999996
No 103
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=2.3e-12 Score=104.71 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc------C--
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL------K-- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~------~-- 191 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+.. +
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 34688889999999999999999999999999999998777775321 0011222210 0
Q ss_pred ----------------HHHHHHHHHHHCCCCC--CC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------------LERIQEDIGKKIRLPT--DS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------------~~~~~~~il~~~~~~~--~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.. .. ...++|++++..|+++|..++.+|+||+
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 161 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 0123456788888863 11 1234589999999999999999999996
No 104
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=4.8e-12 Score=97.67 Aligned_cols=92 Identities=23% Similarity=0.281 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EEE-----------EEeccccCH---HHHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VIW-----------VVVSKELKL---ERIQED 198 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~~-----------v~v~~~~~~---~~~~~~ 198 (237)
..++++++.+..|++++|+|+||+|||||++.++|..++..|.+.+ ... ..+.++... ..+...
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN 93 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH
Confidence 4688889999999999999999999999999999998777775422 000 011111100 011111
Q ss_pred HHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 199 IGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 199 il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..++|++++..|+++|..+|.+|+||+
T Consensus 94 ~-----------~LS~G~~qrv~laral~~~p~illlDE 121 (173)
T cd03230 94 L-----------KLSGGMKQRLALAQALLHDPELLILDE 121 (173)
T ss_pred h-----------hcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 145689999999999999999999996
No 105
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=7.2e-12 Score=103.56 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=75.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-E-------------EEEecccc----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-I-------------WVVVSKEL---- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-~-------------~v~v~~~~---- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . + -..+.++.
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 44446889999999999999999999999999999999998777774311 0 0 01112210
Q ss_pred ---CH------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---KL------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~~------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. ......+++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE 162 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE 162 (271)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 11223466677764311 2344699999999999999999999996
No 106
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=2.5e-12 Score=99.68 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc-CHHHHHH-------------
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL-KLERIQE------------- 197 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~-~~~~~~~------------- 197 (237)
+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+.- ..+.... ......+
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g-~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG-EDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-EEccccchhHHHHhhcEEEEecCCccCC
Confidence 334568888899999999999999999999999999999877777542210 0111000 0000000
Q ss_pred --HHHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 198 --DIGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 198 --~il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.+.+.. ..++|++++..|+++|..++.+++||+
T Consensus 90 ~~t~~~~l~~-----~lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 90 HLTVLENIAL-----GLSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred CCCHHHheee-----cCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 01111110 145689999999999999999999996
No 107
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.28 E-value=1.6e-12 Score=111.09 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=77.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------EEEEecccc--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------IWVVVSKEL-------- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------~~v~v~~~~-------- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.+++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 44445788888999999999999999999999999999998787775321 0 000111110
Q ss_pred -----------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 122445678888885322 2344599999999999999999999996
No 108
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=9.5e-12 Score=99.04 Aligned_cols=98 Identities=21% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEecccc------C--------
Q 044827 139 KVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKEL------K-------- 191 (237)
Q Consensus 139 ~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~~------~-------- 191 (237)
++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ .+. .+.++. +
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS-MLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE-EEecccccCCCCcHHHHHhcc
Confidence 788889999999999999999999999999998777775321 011 111110 0
Q ss_pred ----------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 122345677888875321 2344599999999999999999999996
No 109
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=5.4e-12 Score=102.55 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE------------------EEEecccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI------------------WVVVSKEL 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~------------------~v~v~~~~ 190 (237)
|+....+++++..+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. -..+.+..
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 44446788999999999999999999999999999999998777774321 00 01122211
Q ss_pred ------CH-------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------KL-------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------~~-------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+|+.... ...++|++++..|++++..++.+++||+
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE 167 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 10 11234567777875321 2234589999999999999999999996
No 110
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.28 E-value=6.3e-12 Score=99.82 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEeccc------cC
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKE------LK 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~------~~ 191 (237)
|+....++++++.+..|++++|+|+||+|||||++.|+|..++.+|...+ ..++ .+. .+
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~t 89 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL--GHRNAMKPALT 89 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe--cCCCcCCCCCc
Confidence 34345788899999999999999999999999999999998777775321 1111 111 01
Q ss_pred H--------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 L--------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~--------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .....++++.+++.... ...++|++++..|++++..++.+|+||+
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 153 (207)
T PRK13539 90 VAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153 (207)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 12245677788875311 1334589999999999999999999996
No 111
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.28 E-value=1e-12 Score=97.40 Aligned_cols=96 Identities=26% Similarity=0.308 Sum_probs=68.8
Q ss_pred HHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEeccc------c-----CH
Q 044827 140 VLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKE------L-----KL 192 (237)
Q Consensus 140 i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~------~-----~~ 192 (237)
++..+..|++++|+|+||+|||||++.|++..++..|...+ ..+ +.+. . ..
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGY--VPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEE--EESSHCHHTTSBHHHHHH
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence 34557788999999999999999999999998766664321 112 2221 1 12
Q ss_pred HHHHHHHHHHCCCCC---CC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ERIQEDIGKKIRLPT---DS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ~~~~~~il~~~~~~~---~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+++.+++.. .. ...++|++++..|+++|..++.++||||
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDE 134 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDE 134 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEES
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 335667788777543 11 2234589999999999999999999997
No 112
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.28 E-value=7.8e-12 Score=93.84 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------------EEEEE---------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------------VIWVV--------- 185 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------------~~~v~--------- 185 (237)
.++..+...+..|+.++|||++|+|||||+-.++|...+.+|.... +.+|.
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 4577778888899999999999999999999999999777774322 11110
Q ss_pred -------ec----c--ccCHHHHHHHHHHHCCCCCCCc----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 186 -------VS----K--ELKLERIQEDIGKKIRLPTDSW----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 186 -------v~----~--~~~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. . ..+.....+..++++|+..... ..++|+|++..|++++...|.+|+-|+
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADE 172 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccC
Confidence 00 0 1244566788999999875433 345699999999999999999999885
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.28 E-value=1.1e-11 Score=99.89 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc------C
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL------K 191 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~------~ 191 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+.. +
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t 104 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence 688899999999999999999999999999999998777774321 0011111110 0
Q ss_pred H------------------HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 L------------------ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~------------------~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ...+.++++.+++... ....++|++++..|+++|..++.+|+||+
T Consensus 105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 1234556778887532 12344599999999999999999999996
No 114
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.28 E-value=5.6e-12 Score=97.29 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCC---c-
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDS---W- 210 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~---~- 210 (237)
..+++++..+..|++++|+|+||+|||||++.|+|..++..|.+.+.- ..+. ....... ...++.-... .
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g-~~~~-~~~~~~~----~~~i~~~~q~~~~~~ 89 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG-ADIS-QWDPNEL----GDHVGYLPQDDELFS 89 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC-EEcc-cCCHHHH----HhheEEECCCCcccc
Confidence 367788888999999999999999999999999999877777543210 0000 0011111 0111110000 0
Q ss_pred ------CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 211 ------KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 211 ------~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
-.++|++++..|++++..++.+|+||+
T Consensus 90 ~tv~~~lLS~G~~qrv~la~al~~~p~~lllDE 122 (173)
T cd03246 90 GSIAENILSGGQRQRLGLARALYGNPRILVLDE 122 (173)
T ss_pred CcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 045689999999999999999999996
No 115
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=5e-12 Score=108.81 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=77.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------C-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------K- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~- 191 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. ...+.+++ +
T Consensus 29 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 29 FDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 45445788899999999999999999999999999999999777775321 00 01122211 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 109 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 109 EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 122345678888885321 2344699999999999999999999996
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=3.4e-12 Score=104.60 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEeccc------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKE------ 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~------ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ .+. .+.++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 90 (255)
T PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA-LLPQHHLTPEG 90 (255)
T ss_pred ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE-EecccCCCCCC
Confidence 34445788899999999999999999999999999999998777774311 011 11111
Q ss_pred cC----------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 LK----------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~~----------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ .......+++.+++... ....++|++++..|++++..+|.+|+||+
T Consensus 91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 164 (255)
T PRK11231 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164 (255)
T ss_pred ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00 01133456777777421 12344699999999999999999999996
No 117
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.27 E-value=2.2e-12 Score=103.40 Aligned_cols=107 Identities=25% Similarity=0.232 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~----- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 34345788899999999999999999999999999999998777774321 0011222211
Q ss_pred -CH----------------HHHHHHHHHHC-CCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -KL----------------ERIQEDIGKKI-RLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~~----------------~~~~~~il~~~-~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ......+++.+ ++... ....++|++++..|+++|..++.+|+||+
T Consensus 90 ~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 90 LTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred CcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 00 11223455555 34321 12345699999999999999999999996
No 118
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.27 E-value=7e-12 Score=97.19 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE-------------EEEeccccCHHHHHHHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI-------------WVVVSKELKLERIQEDIGK 201 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~-------------~v~v~~~~~~~~~~~~il~ 201 (237)
..++++++.+..|++++|+|+||+|||||++.++|..++..|.+.+-- -..+.+...... ..+.+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHH
Confidence 467888899999999999999999999999999999878888542110 001111110000 01111
Q ss_pred HCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 202 KIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ ....++|++++..|++++..+|.+|+||+
T Consensus 94 ~i-----~~~LS~G~~qrv~laral~~~p~~lllDE 124 (178)
T cd03247 94 NL-----GRRFSGGERQRLALARILLQDAPIVLLDE 124 (178)
T ss_pred hh-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 11 12345689999999999999999999996
No 119
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=3.6e-12 Score=105.48 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE------------EEEecccc-------C--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI------------WVVVSKEL-------K-- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~------------~v~v~~~~-------~-- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|.|..++.+|.+.+ .. -..+.++. +
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 4788999999999999999999999999999999998777775421 00 01122211 0
Q ss_pred ----------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 164 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 01234567777887432 12344599999999999999999999996
No 120
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.27 E-value=1.2e-11 Score=95.49 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------EEEEEeccccCHHHHHHHHHHHCC
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------VIWVVVSKELKLERIQEDIGKKIR 204 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------~~~v~v~~~~~~~~~~~~il~~~~ 204 (237)
...++++++.+..|++++|+|+||+|||||++++.+. .|...+ .....+.+ .+.++.++
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~ 75 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVG 75 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEEhH--------HHHHHHcC
Confidence 3457888999999999999999999999999999742 222110 00112222 46788888
Q ss_pred CCCC-C----cCCCCHHHHHHHHHHHhhcC--CcEEEecC
Q 044827 205 LPTD-S----WKNRSIENEARDIYNILRKK--KFLLLLDD 237 (237)
Q Consensus 205 ~~~~-~----~~~~~~~~~~~~l~~~l~~~--~~LlvLDd 237 (237)
+... . ...+.|++++..|++++..+ +.+|+||+
T Consensus 76 L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDE 115 (176)
T cd03238 76 LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDE 115 (176)
T ss_pred CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeC
Confidence 7532 1 12345899999999999999 99999996
No 121
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.27 E-value=1.1e-11 Score=97.92 Aligned_cols=107 Identities=23% Similarity=0.207 Sum_probs=76.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEE----eccccC
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVV----VSKELK 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~----v~~~~~ 191 (237)
|+....+++++..+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..++. .....+
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 33345788999999999999999999999999999999998777774321 11111 000111
Q ss_pred H-------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 L-------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~-------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ...+.++++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 91 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 91 LRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 11345677777774321 1334599999999999999999999996
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.27 E-value=7.5e-12 Score=102.71 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-----------EEE-Eecccc------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-----------IWV-VVSKEL------ 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-----------~~v-~v~~~~------ 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ..+ .+.++.
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 44445788999999999999999999999999999999998777774321 0 001 111110
Q ss_pred C------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhh------cCCcEEEecC
Q 044827 191 K------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILR------KKKFLLLLDD 237 (237)
Q Consensus 191 ~------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~------~~~~LlvLDd 237 (237)
+ ......++++.+++... ....++|++++..|+++|. .++.+|+||+
T Consensus 92 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDE 166 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDE 166 (258)
T ss_pred CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC
Confidence 0 01234567777887531 1234459999999999999 5889999996
No 123
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=3.7e-12 Score=105.65 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-E-----------EEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-I-----------WVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-~-----------~v~v~~~~---------- 190 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++..|.+.+ . + -..+.+++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 3788899999999999999999999999999999998788885321 0 0 00111110
Q ss_pred ------------CH---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------KL---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------~~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++.... ...++|++++..|+++|..+|.+||||+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 166 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 166 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 01 12345677888885321 2334589999999999999999999996
No 124
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.27 E-value=1.2e-11 Score=101.61 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---E--------------------EEEEec
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---V--------------------IWVVVS 187 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~--------------------~~v~v~ 187 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ....+.
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 34345788899999999999999999999999999999998777774311 0 011222
Q ss_pred ccc--------C-------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 188 KEL--------K-------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 188 ~~~--------~-------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
++. . ......++++.+++... ....++|++++..|+++|..+|.+|+|
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llll 175 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 221 0 01123456778887421 123345999999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 176 DE 177 (258)
T PRK11701 176 DE 177 (258)
T ss_pred cC
Confidence 96
No 125
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.27 E-value=2e-11 Score=99.97 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc----CCCcceE------------EEEEEeccc----cC---
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY----GGHNFDI------------VIWVVVSKE----LK--- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~----~~~~f~~------------~~~v~v~~~----~~--- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ .....+.++ +.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 478889999999999999999999999999999999866 6674321 001122222 11
Q ss_pred -----------------HHHHHHHHHHHCCCCCC-------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTD-------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE 166 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADE 166 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01234556777887531 12344599999999999999999999996
No 126
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.27 E-value=5.5e-12 Score=96.40 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCcCCC
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSWKNR 213 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~~~ 213 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+.- ..+.. .+.... .-..++.- ...+
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g-~~~~~-~~~~~~---~~~~i~~~---~qLS 84 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG-KEVSF-ASPRDA---RRAGIAMV---YQLS 84 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-EECCc-CCHHHH---HhcCeEEE---EecC
Confidence 3467888889999999999999999999999999999877777542210 01111 111111 11112221 1256
Q ss_pred CHHHHHHHHHHHhhcCCcEEEecC
Q 044827 214 SIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 214 ~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+|++++..|++++..+|.+|+||+
T Consensus 85 ~G~~qrl~laral~~~p~illlDE 108 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDE 108 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEC
Confidence 799999999999999999999996
No 127
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.8e-12 Score=102.80 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL---- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~---- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+. .+.+..
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 91 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG-YLPQEASIFR 91 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE-EeccCCcccc
Confidence 34345788899999999999999999999999999999998777774321 011 111110
Q ss_pred --C-------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K-------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~-------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 92 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 92 RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 012345667777774321 2344699999999999999999999996
No 128
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=6.5e-12 Score=107.10 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE----------------E-EEEecccc------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV----------------I-WVVVSKEL------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~----------------~-~v~v~~~~------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. . ...+.+.+ +
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 46888999999999999999999999999999999987777753210 0 01112211 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 012345678888885321 1334599999999999999999999996
No 129
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=9.6e-12 Score=114.17 Aligned_cols=108 Identities=19% Similarity=0.307 Sum_probs=78.9
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----EEEEEe-cccc-------------
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----VIWVVV-SKEL------------- 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~~~v~v-~~~~------------- 190 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ ..++.- ...+
T Consensus 10 ~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~ 89 (638)
T PRK10636 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDR 89 (638)
T ss_pred EeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhH
Confidence 467777899999999999999999999999999999999998788886432 112110 0000
Q ss_pred ----------------------------------CHHHHHHHHHHHCCCCCC----C-cCCCCHHHHHHHHHHHhhcCCc
Q 044827 191 ----------------------------------KLERIQEDIGKKIRLPTD----S-WKNRSIENEARDIYNILRKKKF 231 (237)
Q Consensus 191 ----------------------------------~~~~~~~~il~~~~~~~~----~-~~~~~~~~~~~~l~~~l~~~~~ 231 (237)
.....+..++..+|+... . ...++|++++..|+++|..+|.
T Consensus 90 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~ 169 (638)
T PRK10636 90 EYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSD 169 (638)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCC
Confidence 001233456777887521 1 2334699999999999999999
Q ss_pred EEEecC
Q 044827 232 LLLLDD 237 (237)
Q Consensus 232 LlvLDd 237 (237)
+|+||+
T Consensus 170 lLLLDE 175 (638)
T PRK10636 170 LLLLDE 175 (638)
T ss_pred EEEEcC
Confidence 999996
No 130
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.27 E-value=3.4e-12 Score=103.73 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL---- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~---- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ .+. .+.+..
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 90 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG-RKFQKPTVFE 90 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee-EeccccccCC
Confidence 33335788899999999999999999999999999999998777774221 011 111110
Q ss_pred --C--------------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K--------------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~--------------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDE 169 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDE 169 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 0 112345677778875321 1234589999999999999999999996
No 131
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.27 E-value=7.6e-12 Score=112.21 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=79.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---------------EEEEecccc----
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---------------IWVVVSKEL---- 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---------------~~v~v~~~~---- 190 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. ....+.++.
T Consensus 20 ~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 20 QYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred EeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 3565568899999999999999999999999999999999987777753210 011222211
Q ss_pred --C--------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K--------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~--------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred CCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0 123446678888885321 1334599999999999999999999996
No 132
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.26 E-value=1.3e-11 Score=98.46 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.++. +
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 5788889999999999999999999999999999998777775321 0 001112110 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 162 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 012345677778875321 2344589999999999999999999996
No 133
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.26 E-value=1.5e-11 Score=99.95 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceE--------------EE-EEEeccccC--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDI--------------VI-WVVVSKELK-- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~--------------~~-~v~v~~~~~-- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|.. ++.+|.+.+ .. ...+.++..
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 34345788999999999999999999999999999999984 466664311 00 111222210
Q ss_pred ----H-------------------------HHHHHHHHHHCCCCC----CCc-C-CCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 192 ----L-------------------------ERIQEDIGKKIRLPT----DSW-K-NRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 192 ----~-------------------------~~~~~~il~~~~~~~----~~~-~-~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
. ...+..+++.+++.. ... . .++|++++..|+++|..+|.+|+||
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 169 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD 169 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 0 122355677778752 112 2 4558999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 170 E 170 (243)
T TIGR01978 170 E 170 (243)
T ss_pred C
Confidence 6
No 134
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.26 E-value=8e-12 Score=111.62 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=78.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E--E--------E-Eeccc-------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I--W--------V-VVSKE------- 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~--~--------v-~v~~~------- 189 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. . + + .+.+.
T Consensus 13 ~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 13 LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 555558999999999999999999999999999999999987777753210 0 0 0 11110
Q ss_pred -------cC----------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 -------LK----------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 -------~~----------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. ......++++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred cchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 01 12234567888888532 12345699999999999999999999996
No 135
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.26 E-value=1.7e-11 Score=100.30 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--------E---------------EEEec
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--------I---------------WVVVS 187 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--------~---------------~v~v~ 187 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+- + ...+.
T Consensus 13 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 333346888999999999999999999999999999999987777743210 0 01111
Q ss_pred ccc--------C-------------------HHHHHHHHHHHCCCCC-CC----cCCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 188 KEL--------K-------------------LERIQEDIGKKIRLPT-DS----WKNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 188 ~~~--------~-------------------~~~~~~~il~~~~~~~-~~----~~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
++. . ....+.++++.+++.. .. ...++|++++..|+++|..+|.+|+|
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlll 172 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFM 172 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 110 0 0122345677788742 11 12345899999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 173 DE 174 (253)
T TIGR02323 173 DE 174 (253)
T ss_pred cC
Confidence 96
No 136
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.26 E-value=3.5e-12 Score=103.55 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=75.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----E----------EEE-Eecccc----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----V----------IWV-VVSKEL---- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~----------~~v-~v~~~~---- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ..+ .+.+..
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 34345788999999999999999999999999999999998777774311 0 000 111110
Q ss_pred --C-------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K-------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~-------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+|+.... ...++|++++..|++++..+|.+|+||+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 011234677888875321 1234599999999999999999999996
No 137
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.26 E-value=8.3e-12 Score=102.40 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-------------------------EE
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-------------------------IW 183 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-------------------------~~ 183 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .+
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 34345788899999999999999999999999999999998777774311 0 01
Q ss_pred EEecccc------CH-------------------HHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEE
Q 044827 184 VVVSKEL------KL-------------------ERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLL 233 (237)
Q Consensus 184 v~v~~~~------~~-------------------~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~Ll 233 (237)
..+.++. +. .....++++.+|+.... ...++|++++..|+++|..++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 174 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222211 00 11235677888885321 123458999999999999999999
Q ss_pred EecC
Q 044827 234 LLDD 237 (237)
Q Consensus 234 vLDd 237 (237)
+||+
T Consensus 175 llDE 178 (257)
T PRK10619 175 LFDE 178 (257)
T ss_pred EEeC
Confidence 9996
No 138
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.26 E-value=1.7e-11 Score=101.09 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-------------E-EEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-------------I-WVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-------------~-~v~v~~~~---------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+. . -..+.++.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 47889999999999999999999999999999999998877753210 0 01112210
Q ss_pred --------------C---HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------K---LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------~---~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ....+.++++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE 175 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 0 01233567888888421 12344599999999999999999999996
No 139
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=5.2e-12 Score=104.51 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E-----------EE-Eeccc----c---C-
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I-----------WV-VVSKE----L---K- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~-----------~v-~v~~~----~---~- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. + .+ .+.++ + +
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 47889999999999999999999999999999999987777743110 0 00 11111 0 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..+++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 162 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 01234556777887432 12334599999999999999999999996
No 140
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.25 E-value=4.7e-12 Score=101.44 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--------------EEEEecccc-----C----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--------------IWVVVSKEL-----K---- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--------------~~v~v~~~~-----~---- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|...+. .-..+.++. +
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 97 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence 47889999999999999999999999999999999987777753210 001112211 0
Q ss_pred --------HHHHHHHHHHHCCCCCC---------------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------LERIQEDIGKKIRLPTD---------------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------~~~~~~~il~~~~~~~~---------------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..+++.+++... ....++|++++..|++++..+|.+||||+
T Consensus 98 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDE 166 (220)
T cd03245 98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE 166 (220)
T ss_pred hhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01123445566665321 01345689999999999999999999996
No 141
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.25 E-value=1.7e-11 Score=99.94 Aligned_cols=107 Identities=22% Similarity=0.216 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC-----CCcceE-----E-----------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG-----GHNFDI-----V-----------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~-----~~~f~~-----~-----------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|.|..++. +|.+.+ . ....+.+.
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 90 (247)
T TIGR00972 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK 90 (247)
T ss_pred ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecC
Confidence 34445788999999999999999999999999999999998665 664311 0 00111111
Q ss_pred c-----C-------------------HHHHHHHHHHHCCCC----CC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K-------------------LERIQEDIGKKIRLP----TD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~-------------------~~~~~~~il~~~~~~----~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + .......+++.+++. .. ....++|++++..|+++|..+|.+|+||+
T Consensus 91 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 170 (247)
T TIGR00972 91 PNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170 (247)
T ss_pred cccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 0 012234567777875 21 12334589999999999999999999996
No 142
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=100.80 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE----------------EEEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI----------------VIWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~----------------~~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|... +..|.+.+ .....+.++
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 95 (253)
T PRK14242 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQK 95 (253)
T ss_pred ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecC
Confidence 454468899999999999999999999999999999999752 24554211 001122221
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ...+..+++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 96 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE 175 (253)
T PRK14242 96 PNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175 (253)
T ss_pred CCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 00 112344566667631 112344589999999999999999999996
No 143
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=8.1e-12 Score=102.31 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~----- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+..+.+..
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 44445788999999999999999999999999999999998777774211 0011222211
Q ss_pred -CH---------------------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcE
Q 044827 191 -KL---------------------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFL 232 (237)
Q Consensus 191 -~~---------------------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~L 232 (237)
+. ......+++.+|+.... ...++|++++..|+++|..+|.+
T Consensus 95 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 174 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174 (255)
T ss_pred CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 10 01234456677774311 23345999999999999999999
Q ss_pred EEecC
Q 044827 233 LLLDD 237 (237)
Q Consensus 233 lvLDd 237 (237)
|+||+
T Consensus 175 lllDE 179 (255)
T PRK11300 175 LMLDE 179 (255)
T ss_pred EEEcC
Confidence 99996
No 144
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.25 E-value=8.9e-12 Score=109.59 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE-------E------E-Eecccc-------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI-------W------V-VVSKEL------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~-------~------v-~v~~~~------- 190 (237)
-..++++++.+..|++++|||.+|+|||||+++|.+..++..|...+ .. | + .+.++.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 36689999999999999999999999999999999999887775322 10 0 0 111110
Q ss_pred --------------------CHHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------------KLERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------------~~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......++++..+++.. ....++|++++..||++|..+|.+||+|+
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE 455 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE 455 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC
Confidence 012345667888888642 23445799999999999999999999996
No 145
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.25 E-value=1.5e-11 Score=99.26 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--------------EEE-Eecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--------------IWV-VVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--------------~~v-~v~~~~----- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. ..+ .+.++.
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 444457899999999999999999999999999999999987777743210 001 112211
Q ss_pred -C---------------HHHHHHHHHHHCC-CCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K---------------LERIQEDIGKKIR-LPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~---------------~~~~~~~il~~~~-~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .......+++.++ +.. .....++|++++..|+++|..+|.+|+||+
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 90 LTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred CcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 0 0112244555554 221 112344589999999999999999999996
No 146
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.8e-12 Score=103.77 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE------------EEEecccc------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI------------WVVVSKEL------ 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~------------~v~v~~~~------ 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ .. ...+.++.
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 44445789999999999999999999999999999999998777774321 00 01111110
Q ss_pred C----------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K----------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~----------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++... ....++|++++..|++++..+|.+|+||+
T Consensus 97 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 169 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE 169 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 01234567777777421 12344699999999999999999999996
No 147
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.25 E-value=1.4e-11 Score=113.25 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=77.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--EEE-Eeccc---------c-------
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--IWV-VVSKE---------L------- 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--~~v-~v~~~---------~------- 190 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. ..+ .+.+. +
T Consensus 12 ~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~ 91 (635)
T PRK11147 12 SFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91 (635)
T ss_pred EeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence 3566668999999999999999999999999999999999987777764321 000 00000 0
Q ss_pred ------------------------------------------CHHHHHHHHHHHCCCCCCC--cCCCCHHHHHHHHHHHh
Q 044827 191 ------------------------------------------KLERIQEDIGKKIRLPTDS--WKNRSIENEARDIYNIL 226 (237)
Q Consensus 191 ------------------------------------------~~~~~~~~il~~~~~~~~~--~~~~~~~~~~~~l~~~l 226 (237)
.....+..+++.+|+.... ...++|++++..|+++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHH
Confidence 0011234566777774221 23456999999999999
Q ss_pred hcCCcEEEecC
Q 044827 227 RKKKFLLLLDD 237 (237)
Q Consensus 227 ~~~~~LlvLDd 237 (237)
..+|.+|+||+
T Consensus 172 ~~~P~lLLLDE 182 (635)
T PRK11147 172 VSNPDVLLLDE 182 (635)
T ss_pred hcCCCEEEEcC
Confidence 99999999996
No 148
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=6.5e-12 Score=103.81 Aligned_cols=101 Identities=16% Similarity=0.250 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEeccc----c----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKE----L---- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~----~---- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..+ +.++ +
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~--v~q~~~~~~~~~t 100 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGI--IFQNPDNQFIGAT 100 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEE--EEeCHHHhcCccc
Confidence 5788999999999999999999999999999999998777774311 111 1111 0
Q ss_pred --------------CH---HHHHHHHHHHCCCCCC---C-cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------KL---ERIQEDIGKKIRLPTD---S-WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------~~---~~~~~~il~~~~~~~~---~-~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ...+.++++.+++... . ...++|++++..|+++|..++.+|+||+
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 1124556777887521 1 2344589999999999999999999996
No 149
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.25 E-value=3e-11 Score=97.46 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=70.6
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc----CCCcceE------------EEEEEecccc--------CH
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY----GGHNFDI------------VIWVVVSKEL--------KL 192 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~----~~~~f~~------------~~~v~v~~~~--------~~ 192 (237)
++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ ..-..+.++. +.
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 4567778889999999999999999999999999866 6774311 0011122211 10
Q ss_pred ------------------HHHHHHHHHHCCCCC------C-CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ------------------ERIQEDIGKKIRLPT------D-SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ------------------~~~~~~il~~~~~~~------~-~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....++++.+++.. . ....++|++++..|++++..+|.+|+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 112345677777752 1 12344699999999999999999999996
No 150
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.7e-11 Score=102.13 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----E-----------EEEEecccc-------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----V-----------IWVVVSKEL-------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~-----------~~v~v~~~~-------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.++. +
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 4788999999999999999999999999999999998777775311 0 001122211 0
Q ss_pred ------------------HHHHHHHHHHHCCCC--CCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLP--TDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~--~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+|+. ... ...++|++++..|+++|..+|.+||||+
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE 170 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 012345678888885 111 2334599999999999999999999996
No 151
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.6e-11 Score=101.46 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------EEEEEecccc-------------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------VIWVVVSKEL------------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------~~~v~v~~~~------------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.++.
T Consensus 21 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 100 (272)
T PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100 (272)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhh
Confidence 4678889999999999999999999999999999998777775321 0011111110
Q ss_pred -----------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
........+++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 168 (272)
T PRK15056 101 VMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE 168 (272)
T ss_pred eecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0012345677888875321 2334589999999999999999999996
No 152
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=7.6e-12 Score=103.80 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE------------EEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI------------WVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~------------~v~v~~~~---------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. -..+.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 4788899999999999999999999999999999998888885321 00 01111110
Q ss_pred ------------CH---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------KL---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------~~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. ......++..+|+.... ...++|++++..|+++|..+|.+|+||+
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 12245667777875321 2334589999999999999999999996
No 153
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.24 E-value=6e-12 Score=112.68 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---------------EEEEeccc------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---------------IWVVVSKE------ 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---------------~~v~v~~~------ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. ....+.++
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 454567899999999999999999999999999999999987777753210 00111111
Q ss_pred -------------------cCH---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 -------------------LKL---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 -------------------~~~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+. .....++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 167 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE 167 (501)
T ss_pred CcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 001 12345678888886422 2334599999999999999999999996
No 154
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.24 E-value=1.2e-11 Score=97.76 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceE--------------EEEE-EeccccC--H
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDI--------------VIWV-VVSKELK--L 192 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~--------------~~~v-~v~~~~~--~ 192 (237)
+....++++++.+..|++++|+|+||+|||||++.|+|.. ++..|.+.+ ...+ .+.+... .
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 3345788999999999999999999999999999999983 466674321 0001 1222211 1
Q ss_pred HHHHHHHHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ERIQEDIGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....+++... ....++|++++..|++++..+|.+|+||+
T Consensus 91 ~~~~~~~l~~~-----~~~LS~G~~qrv~laral~~~p~illlDE 130 (200)
T cd03217 91 GVKNADFLRYV-----NEGFSGGEKKRNEILQLLLLEPDLAILDE 130 (200)
T ss_pred CccHHHHHhhc-----cccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11122222211 12355699999999999999999999996
No 155
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.1e-11 Score=101.34 Aligned_cols=107 Identities=21% Similarity=0.142 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE--------------EEEEEecccc-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI--------------VIWVVVSKEL- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~--------------~~~v~v~~~~- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|...+ .....+.++.
T Consensus 13 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 92 (250)
T PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN 92 (250)
T ss_pred ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc
Confidence 3434578899999999999999999999999999999998742 3563211 0000111110
Q ss_pred -----CH--------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----KL--------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----~~--------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ...+.++++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 93 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14247 93 PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE 172 (250)
T ss_pred cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00 122345677777632 112344599999999999999999999996
No 156
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.24 E-value=4.3e-12 Score=104.00 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~----- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+ ..+.+++
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~ 89 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRV-ALVEQDSDTAVP 89 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhhe-EEecccCccCCC
Confidence 34445788999999999999999999999999999999998777774321 01 1111110
Q ss_pred -C----------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K----------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~----------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+++... ....++|++++..|++++..++.+++||+
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 163 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDE 163 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 01133456777777421 12344599999999999999999999996
No 157
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=9.1e-12 Score=107.74 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------------EEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------------IWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------------~~v~v~~~~-- 190 (237)
+|....++++++.+..|++++|+|+||+|||||+++|++..++..|.+.+ . ....+.+..
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34444578888999999999999999999999999999998887775321 0 011222211
Q ss_pred ----C---------------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----K---------------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~---------------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ . .....++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0 0 12345678888885321 2344599999999999999999999996
No 158
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.24 E-value=3.3e-11 Score=96.82 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---------------------E-EEEeccccC-
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---------------------I-WVVVSKELK- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---------------------~-~v~v~~~~~- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. . ...+.++..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 46888999999999999999999999999999999987777753221 0 011122110
Q ss_pred -----------------------HHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------------LERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------------~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 175 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDE 175 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012335567788875321 2234589999999999999999999996
No 159
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.24 E-value=9.5e-13 Score=101.01 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=82.2
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----E-------EE---EEecccc---
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----V-------IW---VVVSKEL--- 190 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~-------~~---v~v~~~~--- 190 (237)
..|+....+++++..+..|+++++.||||+||||..-++.|...+.+|...+ . +- -+..|+.
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4578888899999999999999999999999999999999999888885432 0 00 0111111
Q ss_pred ------------------C-----HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------------K-----LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------------~-----~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .+..+.++++.|.+.+- ....++|+.++..||++|..+|.+++||+
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecC
Confidence 1 12235678888887532 12445799999999999999999999996
No 160
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.24 E-value=1.1e-11 Score=102.45 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-----------------EEEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-----------------IWVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-----------------~~v~v~~~~--- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. ....+.+..
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 444457888999999999999999999999999999999987777743110 001122211
Q ss_pred ---CH-------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---KL-------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~~-------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ......+++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 169 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169 (269)
T ss_pred CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 10 01223467778875321 2344589999999999999999999996
No 161
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.24 E-value=1.7e-11 Score=111.11 Aligned_cols=108 Identities=21% Similarity=0.178 Sum_probs=76.3
Q ss_pred ccc-hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEEEecccc------CH-------
Q 044827 130 IVG-QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWVVVSKEL------KL------- 192 (237)
Q Consensus 130 ~~g-~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v~v~~~~------~~------- 192 (237)
.|| ....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. ....+.+.+ +.
T Consensus 15 ~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 15 VVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEG 94 (556)
T ss_pred EeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHh
Confidence 355 4568999999999999999999999999999999999987888865321 011222211 00
Q ss_pred -----------------------------------------------HHHHHHHHHHCCCCCC---CcCCCCHHHHHHHH
Q 044827 193 -----------------------------------------------ERIQEDIGKKIRLPTD---SWKNRSIENEARDI 222 (237)
Q Consensus 193 -----------------------------------------------~~~~~~il~~~~~~~~---~~~~~~~~~~~~~l 222 (237)
...+..+++.+|+... ....++|++++..|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~l 174 (556)
T PRK11819 95 VAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVAL 174 (556)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHH
Confidence 0112234555666321 12334689999999
Q ss_pred HHHhhcCCcEEEecC
Q 044827 223 YNILRKKKFLLLLDD 237 (237)
Q Consensus 223 ~~~l~~~~~LlvLDd 237 (237)
+++|..+|.+|+||+
T Consensus 175 a~al~~~p~vlLLDE 189 (556)
T PRK11819 175 CRLLLEKPDMLLLDE 189 (556)
T ss_pred HHHHhCCCCEEEEcC
Confidence 999999999999996
No 162
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.6e-11 Score=110.64 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=78.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEEEeccc--------cC--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWVVVSKE--------LK-------- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v~v~~~--------~~-------- 191 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. ....+.+. ..
T Consensus 329 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 408 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQW 408 (530)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHh
Confidence 565568999999999999999999999999999999999987777864321 01112211 01
Q ss_pred -----HHHHHHHHHHHCCCCC-C----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----LERIQEDIGKKIRLPT-D----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----~~~~~~~il~~~~~~~-~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..+++.+++.. . ....++|++++..|++++..++.+||||+
T Consensus 409 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 409 RQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred ccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1223456788888741 1 12344599999999999999999999996
No 163
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1e-11 Score=108.44 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=83.1
Q ss_pred cCcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------------------
Q 044827 127 ERTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------------------- 180 (237)
Q Consensus 127 ~~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------------------- 180 (237)
-+..||.-..++++++.+..|++++++|.||+|||||+|+|+|-+++..|...+
T Consensus 14 i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS 93 (500)
T ss_pred ceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence 345689989999999999999999999999999999999999999888885432
Q ss_pred -EEEEEecccc----------------CHHHHHHHHHHHCCCCCC---CcCC-CCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 181 -VIWVVVSKEL----------------KLERIQEDIGKKIRLPTD---SWKN-RSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 181 -~~~v~v~~~~----------------~~~~~~~~il~~~~~~~~---~~~~-~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+|.++. ......+.++..+++... .... +-+++|...|++++..+..+||||+
T Consensus 94 L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDE 171 (500)
T COG1129 94 LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDE 171 (500)
T ss_pred ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0111111110 123456778888887422 1112 2378888999999999999999996
No 164
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.24 E-value=1.2e-11 Score=99.61 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------E---------EEEEecccc-------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------V---------IWVVVSKEL------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------~---------~~v~v~~~~------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 4788999999999999999999999999999999998777774321 0 001111110
Q ss_pred -CH----------------HHH----HHHHHHHCCCCC-C----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -KL----------------ERI----QEDIGKKIRLPT-D----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~~----------------~~~----~~~il~~~~~~~-~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ... ..++++.+++.. . ....++|++++..|+++|..++.+|+||+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 171 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADE 171 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 00 011 125667777742 1 12334599999999999999999999996
No 165
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.5e-11 Score=98.90 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE-E-----------E-Eecccc--------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI-W-----------V-VVSKEL-------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~-~-----------v-~v~~~~-------- 190 (237)
...+++++..+..|+.++|+|+||+|||||++++.|..++..|...+ .. . + .|.|+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 46788999999999999999999999999999999999888886411 00 0 0 111111
Q ss_pred -----------------CHHHHHHHHHHHCCCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------------KLERIQEDIGKKIRLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------------~~~~~~~~il~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+.++.+|+.. ..+..++|++++..||.+|..+|.+||||+
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 12345677888888853 234556799999999999999999999996
No 166
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=2.4e-11 Score=98.13 Aligned_cols=105 Identities=20% Similarity=0.174 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEecccc------C-
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKEL------K- 191 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~~------~- 191 (237)
+....+++++..+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+.+ +.++. +
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~-~~q~~~~~~~~t~ 89 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNT-VFQNYALFPHLTV 89 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEE-EecccccCCCCcH
Confidence 3345788999999999999999999999999999999998777774321 1111 11110 0
Q ss_pred --------------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......+++.+++.... ...+.|++++..|++++..++.+++||+
T Consensus 90 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 90 FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 11334567778885321 1234589999999999999999999996
No 167
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.23 E-value=3.2e-11 Score=96.50 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc-----C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL-----K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~-----~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+.. +
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 4788899999999999999999999999999999998777774221 0011222221 0
Q ss_pred H-----------HHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 L-----------ERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~-----------~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......+++.+++.. .....++|++++..|++++..+|.+|+||+
T Consensus 95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 166 (218)
T cd03290 95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDD 166 (218)
T ss_pred HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 0 112234445554321 112334599999999999999999999996
No 168
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.6e-11 Score=101.73 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE--------------------------------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI-------------------------------- 182 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~-------------------------------- 182 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+..
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 478889999999999999999999999999999999887777642210
Q ss_pred ------EEEecccc-------C------------------HHHHHHHHHHHCCCCC-CC----cCCCCHHHHHHHHHHHh
Q 044827 183 ------WVVVSKEL-------K------------------LERIQEDIGKKIRLPT-DS----WKNRSIENEARDIYNIL 226 (237)
Q Consensus 183 ------~v~v~~~~-------~------------------~~~~~~~il~~~~~~~-~~----~~~~~~~~~~~~l~~~l 226 (237)
-..+.++. + ......++++.+|+.. .. ...++|++++..|+++|
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 01222221 0 0123456788888852 11 23345899999999999
Q ss_pred hcCCcEEEecC
Q 044827 227 RKKKFLLLLDD 237 (237)
Q Consensus 227 ~~~~~LlvLDd 237 (237)
..+|.+|+||+
T Consensus 181 ~~~P~lLlLDE 191 (305)
T PRK13651 181 AMEPDFLVFDE 191 (305)
T ss_pred HhCCCEEEEeC
Confidence 99999999996
No 169
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=2.1e-11 Score=97.24 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------------EEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------------IWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------------~~v~v~~~~-- 190 (237)
||+... ++++.+.. ++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+++..
T Consensus 10 ~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 10 LPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred cCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 455433 88889999 999999999999999999999998777775311 0 011222211
Q ss_pred ----CH----------------HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----KL----------------ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~~----------------~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++... ....++|++++..|++++..+|.+|+||+
T Consensus 87 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 87 FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 10 1234567788887531 12344599999999999999999999996
No 170
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.23 E-value=2e-11 Score=92.70 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=76.0
Q ss_pred ccchH--HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEeccc---
Q 044827 130 IVGQQ--ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKE--- 189 (237)
Q Consensus 130 ~~g~~--~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~--- 189 (237)
++|+. ..++.+++.|..++.++|+|.||+|||||++++.|..+|.+|..-+ .+. .+.++
T Consensus 20 lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IR-MiFQDpnt 98 (267)
T COG4167 20 LFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIR-MIFQDPNT 98 (267)
T ss_pred hhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhhee-eeecCCcc
Confidence 45553 4688899999999999999999999999999999999998885321 010 11111
Q ss_pred -c--------------------CH---HHHHHHHHHHCCCCCCCc-----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 -L--------------------KL---ERIQEDIGKKIRLPTDSW-----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 -~--------------------~~---~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ++ ...+.+-++..|+-.+.. ....+++++..|+++|.-.|.+||.||
T Consensus 99 s~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 99 SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred ccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 1 11 222344556677643321 223589999999999999999999996
No 171
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=8e-12 Score=103.59 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~---------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++.
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 4788999999999999999999999999999999998787775321 0 001122210
Q ss_pred ------------CH---HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------KL---ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------~~---~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 1123566777787531 12344699999999999999999999996
No 172
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.23 E-value=2e-11 Score=110.05 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-------------EEEEecccc----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-------------IWVVVSKEL---------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-------------~~v~v~~~~---------- 190 (237)
...+++++..+..|+.++|+|++|+|||||++.+.+..++.+|..-.- ....|+|+.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 347999999999999999999999999999999999998888864220 112233321
Q ss_pred -------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++..++.+ ....-++|++||..|||++..++.+|||||
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01233345555554421 011234589999999999999999999997
No 173
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=1.1e-11 Score=97.96 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc---cCCCcceE---EE---------EE-Eecccc---CHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC---YGGHNFDI---VI---------WV-VVSKEL---KLERI 195 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~---~~~~~f~~---~~---------~v-~v~~~~---~~~~~ 195 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..+ +..|...+ .+ .+ .+.++. ....+
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 100 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTV 100 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcH
Confidence 46888889999999999999999999999999999986 56664321 00 01 122211 11112
Q ss_pred HHHHHH--HCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIGK--KIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.- ...........++|++++..|+++|..+|.+|+||+
T Consensus 101 ~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDE 144 (202)
T cd03233 101 RETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDN 144 (202)
T ss_pred HHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 122211 111211222345689999999999999999999996
No 174
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.23 E-value=2.1e-11 Score=99.74 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=75.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE-------------------------E
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI-------------------------W 183 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~-------------------------~ 183 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. -
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 33345788889999999999999999999999999999998777774321 00 0
Q ss_pred EEecccc------C-------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEE
Q 044827 184 VVVSKEL------K-------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLL 234 (237)
Q Consensus 184 v~v~~~~------~-------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~Llv 234 (237)
..+.++. + ....+.++++.+++.... ...++|++++..|+++|..+|.+|+
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 169 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVML 169 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 0111110 0 012235677778875321 2334589999999999999999999
Q ss_pred ecC
Q 044827 235 LDD 237 (237)
Q Consensus 235 LDd 237 (237)
||+
T Consensus 170 lDE 172 (252)
T TIGR03005 170 FDE 172 (252)
T ss_pred EeC
Confidence 996
No 175
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.23 E-value=8.9e-12 Score=111.82 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=77.8
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEE--------
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWV-------- 184 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v-------- 184 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..++
T Consensus 14 ~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 93 (510)
T PRK09700 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVID 93 (510)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccC
Confidence 355556789999999999999999999999999999999998776764311 1111
Q ss_pred --Eecccc-------------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 --VVSKEL-------------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 --~v~~~~-------------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++.++. .....+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE 171 (510)
T PRK09700 94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE 171 (510)
T ss_pred CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 000000 0112345678888885321 1334599999999999999999999996
No 176
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.9e-11 Score=100.78 Aligned_cols=103 Identities=19% Similarity=0.181 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------------EEEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------------IWVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------------~~v~v~~~~------ 190 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 4789999999999999999999999999999999998887774321 0 001122210
Q ss_pred -C------------------HHHHHHHHHHHCCCC-CC---C-cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K------------------LERIQEDIGKKIRLP-TD---S-WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~------------------~~~~~~~il~~~~~~-~~---~-~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++. .. . ...++|++++..|+++|..+|.+||||+
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDE 171 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0 011235567778884 21 1 2344599999999999999999999996
No 177
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.23 E-value=4.9e-11 Score=103.61 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEE---ecc---------------------cc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVV---VSK---------------------EL 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~---v~~---------------------~~ 190 (237)
..+.++++-+.-+..+++|||||+|||||+++++++..+..|......-.. ..+ +-
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 678888888888999999999999999999999999988888543211110 011 01
Q ss_pred CHHHHHHHHHHHCCCCCCCc-----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 KLERIQEDIGKKIRLPTDSW-----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+.++.++|+..... ..++|++.++.++.++...|.+||||+
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE 535 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE 535 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC
Confidence 34567788999999974422 234589999999999999999999996
No 178
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.22 E-value=4.5e-11 Score=94.65 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEEeccc-----------------cCHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVVVSKE-----------------LKLER 194 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~v~~~-----------------~~~~~ 194 (237)
..++++++.+..|++++|+|+||+|||||++.|+|..++..|.+.+ ..++ .++ ++ ..
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~--~q~~~l~~~t~~enl~~~~~~~-~~ 95 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYV--SQEPWIQNGTIRENILFGKPFD-EE 95 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEE--ecCchhccCcHHHHhccCCCcC-HH
Confidence 4788999999999999999999999999999999998888886532 1221 111 11 11
Q ss_pred HHHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 195 IQEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 195 ~~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....++.+++. ......+.|++++..|++++..+|.+++||+
T Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE 153 (204)
T cd03250 96 RYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD 153 (204)
T ss_pred HHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 122333333221 0112344599999999999999999999996
No 179
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=2.1e-11 Score=103.24 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc-------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.++.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 5789999999999999999999999999999999998777774321 0 001222211
Q ss_pred -C-------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K-------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~-------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+|+... ....++|++++..|+++|..++.+||+|+
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE 180 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE 180 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0 11234667888888521 12345699999999999999999999996
No 180
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.22 E-value=2e-11 Score=95.04 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--E-------------EEEecccc-----C-HHH
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--I-------------WVVVSKEL-----K-LER 194 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--~-------------~v~v~~~~-----~-~~~ 194 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. . ...+.++. . ...
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 94 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence 6888889999999999999999999999999999987777753210 0 01122211 0 011
Q ss_pred HHHHHHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 195 IQEDIGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 195 ~~~~il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+...+. .. ...+.|++++..|++++..++.+|+||+
T Consensus 95 ~~e~l~----~~---~~LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 95 VAENIA----LS---SLLSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred HHHHHH----HH---hhcCHHHHHHHHHHHHHccCCCEEEECC
Confidence 111111 00 0155689999999999999999999996
No 181
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.22 E-value=5.9e-11 Score=96.64 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=65.9
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE--EEEeccc------cCHH--------------HHHHHHHH
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI--WVVVSKE------LKLE--------------RIQEDIGK 201 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~--~v~v~~~------~~~~--------------~~~~~il~ 201 (237)
+..|++++|+|+||+|||||+++|+|..++..|.+.+.. -..+.+. .+.. ....++++
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 346799999999999999999999999878888653210 0111111 0111 12345677
Q ss_pred HCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 202 KIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 202 ~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+++... ....++|++++..|+++|..++.+++||+
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDE 141 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDE 141 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7777531 12345699999999999999999999996
No 182
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.22 E-value=3.5e-11 Score=95.96 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------EEEEecccc------C-------
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------IWVVVSKEL------K------- 191 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------~~v~v~~~~------~------- 191 (237)
+.+++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++. +
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 35778888999999999999999999999999998777775321 0 011112110 0
Q ss_pred -----------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|++++..+|.+++||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012345577888874311 2344599999999999999999999996
No 183
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=3.5e-11 Score=97.19 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=70.8
Q ss_pred HHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEecccc------C--------
Q 044827 139 KVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKEL------K-------- 191 (237)
Q Consensus 139 ~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~~------~-------- 191 (237)
++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+. .+.+.. +
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVS-MLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEE-EEecccccccCCcHHHHHhcc
Confidence 678888999999999999999999999999998777774321 011 111110 0
Q ss_pred ----------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++... ....++|++++..|++++..++.+|+||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01234567788887421 12345699999999999999999999996
No 184
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.22 E-value=2e-11 Score=97.89 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----C---
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL-----K--- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~-----~--- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ .+. .+.+.. +
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~e 96 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS-IIPQDPVLFSGTIRS 96 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE-EECCCCccccchHHH
Confidence 4789999999999999999999999999999999998788785421 011 111111 0
Q ss_pred --------HHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------LERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
........++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 165 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDE 165 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0112233444444321 112334589999999999999999999996
No 185
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.22 E-value=1.7e-11 Score=112.57 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=78.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEEEeccc---c----CH--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWVVVSKE---L----KL-------- 192 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v~v~~~---~----~~-------- 192 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. -..++.+. + +.
T Consensus 329 ~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGK 408 (635)
T ss_pred ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhc
Confidence 555568999999999999999999999999999999999987888865321 01122221 0 11
Q ss_pred --------HHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 --------ERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 --------~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+..++..+++... ....++|++++..|+++|..++.+||||+
T Consensus 409 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDE 466 (635)
T PRK11147 409 QEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDE 466 (635)
T ss_pred ccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1224556777777421 12345699999999999999999999996
No 186
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.5e-11 Score=101.57 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc-------C-
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-------K- 191 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-------~- 191 (237)
.+++++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+ ..++ .++. .
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~~v 101 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIV--FQNPDNQFVGSIV 101 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEE--EeChHHhcccccH
Confidence 688899999999999999999999999999999998777774321 1111 1110 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..+++.+++.... ...++|++++..|++++..++.+||||+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 012345667788875321 2344599999999999999999999996
No 187
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=2.5e-11 Score=101.25 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------------EEEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------------IWVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------------~~v~v~~~~------ 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . .-..+.++.
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 4788999999999999999999999999999999998777775421 0 001222211
Q ss_pred ----------------C---HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----------------K---LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----------------~---~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE 171 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0 01234567778888521 12234599999999999999999999996
No 188
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.21 E-value=5.5e-11 Score=97.28 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=75.2
Q ss_pred cchH-HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce-------------EE-E----------EE-
Q 044827 131 VGQQ-ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD-------------IV-I----------WV- 184 (237)
Q Consensus 131 ~g~~-~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~-------------~~-~----------~v- 184 (237)
|+.. ..+++++ .+..|++++|+|+||+|||||+++|+|..++..|.+. -. . .+
T Consensus 10 y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 88 (255)
T cd03236 10 YGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVK 88 (255)
T ss_pred ecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccc
Confidence 4433 4678887 5788999999999999999999999999988888652 00 0 00
Q ss_pred --Eecccc------------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 --VVSKEL------------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 --~v~~~~------------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.+.+ .......++++.+++.... ...+.|++++..|++++..++.+++||+
T Consensus 89 i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 165 (255)
T cd03236 89 VIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDE 165 (255)
T ss_pred eeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 001110 1123456778888885321 1234589999999999999999999996
No 189
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=2.9e-11 Score=99.25 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=72.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE--E--------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI--V--------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~--~--------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ .+|...+ . ....+.+.
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (258)
T PRK14241 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQR 93 (258)
T ss_pred ECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccc
Confidence 4434578899999999999999999999999999999998743 3563211 0 01112221
Q ss_pred c------CH-------------------HHHHHHHHHHCCCCC-------C-CcCCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 190 L------KL-------------------ERIQEDIGKKIRLPT-------D-SWKNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 190 ~------~~-------------------~~~~~~il~~~~~~~-------~-~~~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
. +. ...+.++++.+++.. . ....++|++++..|+++|..++.+|+||
T Consensus 94 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (258)
T PRK14241 94 PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173 (258)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 00 112344666777621 1 1234458999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 174 E 174 (258)
T PRK14241 174 E 174 (258)
T ss_pred C
Confidence 6
No 190
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.8e-11 Score=100.21 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ . ....+.++
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (254)
T PRK14273 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96 (254)
T ss_pred eCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeec
Confidence 4445578999999999999999999999999999999998754 2453211 0 00111221
Q ss_pred c-----C-------------------HHHHHHHHHHHCCCC--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K-------------------LERIQEDIGKKIRLP--------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~-------------------~~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + .......+++.+++. ......++|++++..|+++|..+|.+||||+
T Consensus 97 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 176 (254)
T PRK14273 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE 176 (254)
T ss_pred cccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 0 012234455666652 1112344589999999999999999999996
No 191
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.5e-11 Score=102.27 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E-------------EEEecccc-------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I-------------WVVVSKEL------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~-------------~v~v~~~~------- 190 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+. + -..+.+++
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 458899999999999999999999999999999999987777743210 0 01111211
Q ss_pred ---------------C---HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------K---LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------~---~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .......+++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 01234566777887531 12344599999999999999999999996
No 192
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.21 E-value=3.4e-11 Score=98.21 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceE--------------EEEE-Eecccc----
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDI--------------VIWV-VVSKEL---- 190 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~--------------~~~v-~v~~~~---- 190 (237)
+....+++++..+..|++++|+|+||+|||||+++|+|.. ++.+|...+ ...+ .+.++.
T Consensus 12 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 3345788899999999999999999999999999999984 366664311 0001 111111
Q ss_pred ---------------------------CHHHHHHHHHHHCCCCCC----Cc--CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------------------KLERIQEDIGKKIRLPTD----SW--KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------------------~~~~~~~~il~~~~~~~~----~~--~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....+..+++.++++.. .. ..++|++++..|++++..+|.+|+||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDE 171 (248)
T PRK09580 92 GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 171 (248)
T ss_pred chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 001223455666666421 11 355699999999999999999999996
No 193
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.21 E-value=1.6e-11 Score=105.53 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE----------------------EEEEecc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV----------------------IWVVVSK 188 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~----------------------~~v~v~~ 188 (237)
+|....++++++.+..|++++|+|+||+|||||+++|++..++..|.+.+. .-..+.+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 455556788889999999999999999999999999999987777743110 0011222
Q ss_pred cc------C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 EL------K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 ~~------~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ + ......++++.+|+.... ...++|++++..|+++|..+|.+|+||+
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 11 0 012345678888885422 2344599999999999999999999996
No 194
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.21 E-value=3.9e-11 Score=108.66 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=43.0
Q ss_pred cc-hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce
Q 044827 131 VG-QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD 179 (237)
Q Consensus 131 ~g-~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~ 179 (237)
|+ ....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.
T Consensus 14 ~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~ 63 (552)
T TIGR03719 14 VPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR 63 (552)
T ss_pred cCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 44 44578999999999999999999999999999999999878888653
No 195
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=4e-11 Score=102.62 Aligned_cols=99 Identities=20% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------------EEEecccc------C---
Q 044827 139 KVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------------WVVVSKEL------K--- 191 (237)
Q Consensus 139 ~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------------~v~v~~~~------~--- 191 (237)
++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ .. ...+.+++ +
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 677888899999999999999999999999998777774321 00 01222221 1
Q ss_pred ---------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE 154 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 122345678888885321 2344599999999999999999999996
No 196
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.2e-11 Score=99.92 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE--------------EEEecccc-------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI--------------WVVVSKEL-------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~--------------~v~v~~~~-------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. ...+.++. +
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 4788899999999999999999999999999999998777775421 00 01222221 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+++.... ...++|++++..|+++|..+|.+||||+
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 012345677788875321 2334589999999999999999999996
No 197
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.20 E-value=3.9e-11 Score=94.35 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=69.3
Q ss_pred HHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE---------EE-Eecccc------C------------
Q 044827 140 VLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI---------WV-VVSKEL------K------------ 191 (237)
Q Consensus 140 i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~---------~v-~v~~~~------~------------ 191 (237)
+++.+..|++++|+|+||+|||||+++|+|..++..|...+.- .+ .+.+.. +
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 98 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY 98 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence 6777889999999999999999999999999877777532100 01 122211 1
Q ss_pred -HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+++.... ...++|++++..|++++..++.+++||+
T Consensus 99 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE 149 (195)
T PRK13541 99 NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149 (195)
T ss_pred ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 112345566777774311 2234589999999999999999999996
No 198
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=3.7e-11 Score=100.09 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------------EEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------------WVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------------~v~v~~~~------ 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. -..+.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 4788999999999999999999999999999999998777774311 00 01222211
Q ss_pred ----------------C---HHHHHHHHHHHCCCC-CC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----------------K---LERIQEDIGKKIRLP-TD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----------------~---~~~~~~~il~~~~~~-~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+|+. .. ....++|++++..|+++|..+|.+|+||+
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE 171 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 0 112345677788885 21 12334589999999999999999999996
No 199
>PRK13409 putative ATPase RIL; Provisional
Probab=99.20 E-value=3.9e-11 Score=108.99 Aligned_cols=101 Identities=21% Similarity=0.202 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEE-Eecccc------C-------------HHHHH
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWV-VVSKEL------K-------------LERIQ 196 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v-~v~~~~------~-------------~~~~~ 196 (237)
++.++..+..|++++|+|+||+|||||+++|+|..++..|.+.+...+ .+.+.. + .....
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 434 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYK 434 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHH
Confidence 677788889999999999999999999999999998888865432111 122221 1 11234
Q ss_pred HHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 197 EDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 197 ~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.++++.+++... ....++|++++..|+++|..++.+||||+
T Consensus 435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE 479 (590)
T PRK13409 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479 (590)
T ss_pred HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 567788887531 12345699999999999999999999996
No 200
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.8e-11 Score=98.65 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEeccccC--------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKELK-------- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~~-------- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+. .+.++..
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~ 95 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG-VVLQDTFLFSGTIME 95 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE-EecCCchhhhhHHHH
Confidence 4789999999999999999999999999999999998777775421 011 1122110
Q ss_pred ---------HHHHHHHHHHHCCC-----------CC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------LERIQEDIGKKIRL-----------PT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------~~~~~~~il~~~~~-----------~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
........++.+++ .. .....++|++++..|+++|..+|.+|+||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDE 165 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE 165 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01111222222222 10 112344599999999999999999999996
No 201
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.20 E-value=3.8e-11 Score=98.96 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------------EEEEEeccc----c-
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------------VIWVVVSKE----L- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------------~~~v~v~~~----~- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..+ +.+. +
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~--v~q~~~~~~~ 102 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQL--VFQDSPSAVN 102 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEE--EecChhhhcC
Confidence 4788999999999999999999999999999999998777774311 111 1111 0
Q ss_pred ---C-------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---K-------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~-------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+..+++.+++... ....++|++++..|+++|..++.+|+||+
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE 176 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 01233567788888421 12344699999999999999999999996
No 202
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.20 E-value=3.9e-11 Score=102.76 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=71.4
Q ss_pred HHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------------EEEecccc------CH--
Q 044827 139 KVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------------WVVVSKEL------KL-- 192 (237)
Q Consensus 139 ~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------------~v~v~~~~------~~-- 192 (237)
++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .. ...+.++. +.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 677888899999999999999999999999998777775311 00 01122211 00
Q ss_pred --------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 --------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 --------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11246678888885321 2344699999999999999999999996
No 203
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.9e-11 Score=100.59 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE---EE-------------EEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI---VI-------------WVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~---~~-------------~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ +..|.+.+ .+ ...+.++
T Consensus 49 ~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~ 128 (285)
T PRK14254 49 YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQK 128 (285)
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 444568999999999999999999999999999999999874 35564321 00 0122221
Q ss_pred c-----CH-----------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-----------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-----------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ...+..+++.+++.. .....++|++++..|+++|..++.+||||+
T Consensus 129 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE 206 (285)
T PRK14254 129 PNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206 (285)
T ss_pred CccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 10 112345666777631 112345699999999999999999999996
No 204
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.1e-11 Score=98.95 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE-----E-----------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI-----V-----------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~-----~-----------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ +..|.+.+ . ....+.+.
T Consensus 23 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~ 102 (269)
T PRK14259 23 YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQ 102 (269)
T ss_pred ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccC
Confidence 444457899999999999999999999999999999999864 24553211 0 01122221
Q ss_pred c-----C-----------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K-----------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~-----------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + ......++++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 103 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 180 (269)
T PRK14259 103 PNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180 (269)
T ss_pred CccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 0 0122344566666521 112244589999999999999999999996
No 205
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.20 E-value=1.3e-11 Score=100.01 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------EEEE-Eecccc------C--
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------VIWV-VVSKEL------K-- 191 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------~~~v-~v~~~~------~-- 191 (237)
+....+++++..+..|++++|+|+||+|||||++.|+|..++..|.+.+ .-.+ .+++.. +
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 3345788888999999999999999999999999999998777774321 0001 111110 0
Q ss_pred ----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...+.|++++..|+++|..++.+++||+
T Consensus 91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 012235667777774211 2344589999999999999999999996
No 206
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.20 E-value=1.3e-11 Score=104.72 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc-------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . -...+.++.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 4788999999999999999999999999999999998777774321 0 011222211
Q ss_pred -C--------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K--------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~--------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++... ....++|++++..|+++|..++.+||+|+
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE 187 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 187 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 01223456778887421 12345699999999999999999999996
No 207
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.20 E-value=6.3e-11 Score=94.04 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--------------EEEEeccccC--HHHHH--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--------------IWVVVSKELK--LERIQ-- 196 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--------------~~v~v~~~~~--~~~~~-- 196 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+. ....+.++.. ...+.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 47889999999999999999999999999999999987777753220 0111222110 00000
Q ss_pred ---------HHHHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 197 ---------EDIGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 197 ---------~~il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+.+.+.+.......++|++++..|++++..++.+|+||+
T Consensus 102 l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 151 (207)
T cd03369 102 LDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE 151 (207)
T ss_pred hcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 11222233322223445689999999999999999999996
No 208
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.5e-11 Score=104.40 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc----cCCCcceE--E----------------EEEEecccc-
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC----YGGHNFDI--V----------------IWVVVSKEL- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~----~~~~~f~~--~----------------~~v~v~~~~- 190 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..+ +..|.+.+ . ....+.++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 357899999999999999999999999999999999874 24453211 0 001122211
Q ss_pred -------C------------------------HHHHHHHHHHHCCCCCC-------CcCCCCHHHHHHHHHHHhhcCCcE
Q 044827 191 -------K------------------------LERIQEDIGKKIRLPTD-------SWKNRSIENEARDIYNILRKKKFL 232 (237)
Q Consensus 191 -------~------------------------~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~L 232 (237)
+ ......++++.+|+... ....++|++++..|+++|..++.+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 0 01234567888888531 123456999999999999999999
Q ss_pred EEecC
Q 044827 233 LLLDD 237 (237)
Q Consensus 233 lvLDd 237 (237)
||+|+
T Consensus 180 lilDE 184 (330)
T PRK15093 180 LIADE 184 (330)
T ss_pred EEEeC
Confidence 99996
No 209
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4e-11 Score=100.72 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE----------------EEEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI----------------VIWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~----------------~~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ +..|.+.+ .....+.+.
T Consensus 55 ~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~ 134 (305)
T PRK14264 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQS 134 (305)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccC
Confidence 454568999999999999999999999999999999999874 34563211 001122222
Q ss_pred cC------------------------------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHH
Q 044827 190 LK------------------------------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNI 225 (237)
Q Consensus 190 ~~------------------------------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~ 225 (237)
.. ....+..+++.+++.. .....++|++++..|+++
T Consensus 135 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAra 214 (305)
T PRK14264 135 PNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARC 214 (305)
T ss_pred CccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHH
Confidence 10 0112344556666521 112344589999999999
Q ss_pred hhcCCcEEEecC
Q 044827 226 LRKKKFLLLLDD 237 (237)
Q Consensus 226 l~~~~~LlvLDd 237 (237)
|..++.+|+||+
T Consensus 215 L~~~p~lLLLDE 226 (305)
T PRK14264 215 LAVDPEVILMDE 226 (305)
T ss_pred HhcCCCEEEEeC
Confidence 999999999996
No 210
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.19 E-value=2.7e-11 Score=99.13 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=79.5
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc------------------------------ceEEEEEEe
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN------------------------------FDIVIWVVV 186 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~------------------------------f~~~~~v~v 186 (237)
+.++++.+..|++..|.|.+|+|||||++++.+..+++.|. |-...|.+|
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 35667778889999999999999999999999999888883 333555555
Q ss_pred cccc------------CHHHHHHHHHHHCCCCCCCc----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 187 SKEL------------KLERIQEDIGKKIRLPTDSW----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 187 ~~~~------------~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
-++. ...+...+.++..|+..... ..++|+||+.-|+++|.+++.+|++|+
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 4432 23456677888899875432 345799999999999999999999996
No 211
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.8e-11 Score=101.62 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc--------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+. .+.++.
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~~~ 102 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAG-MVFQNPDNQIVATI 102 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheE-EEecChhhhhcccc
Confidence 4788999999999999999999999999999999998777774311 011 111110
Q ss_pred --------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .......+++.+|+.... ...++|++++..|+++|..+|.+||||+
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 170 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 012345677778875321 2334599999999999999999999996
No 212
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2.2e-11 Score=100.01 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE---E------------E-EEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI---V------------I-WVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~---~------------~-~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ +..|.+.+ . - ...+.++
T Consensus 23 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 102 (260)
T PRK10744 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQK 102 (260)
T ss_pred eCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecC
Confidence 444457899999999999999999999999999999999874 24563211 0 0 0111221
Q ss_pred c-----C----------------H---HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K----------------L---ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~----------------~---~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + . .....++++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 103 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 182 (260)
T PRK10744 103 PTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE 182 (260)
T ss_pred CccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 0 0 0 122345667777521 112344599999999999999999999996
No 213
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=4.9e-11 Score=99.04 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------------EEEEEecccc----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------------VIWVVVSKEL---- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------------~~~v~v~~~~---- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ ..+ +.+..
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~--~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGL--VFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEE--EeeChhhhh
Confidence 3688899999999999999999999999999999998777775311 111 12210
Q ss_pred ---C---------------H---HHHHHHHHHHCCCCCC----C-cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---K---------------L---ERIQEDIGKKIRLPTD----S-WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~---------------~---~~~~~~il~~~~~~~~----~-~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ . ......+++.+++... . ...++|++++..|+++|..+|.+|+||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 171 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDE 171 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 0 1123456677787521 1 1234589999999999999999999996
No 214
>PRK13409 putative ATPase RIL; Provisional
Probab=99.19 E-value=3.2e-11 Score=109.55 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=77.3
Q ss_pred cccchH-HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce-----------E----------------
Q 044827 129 TIVGQQ-ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD-----------I---------------- 180 (237)
Q Consensus 129 ~~~g~~-~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~-----------~---------------- 180 (237)
..||.. ..++++. .+..|++++|+|+||+|||||+++|+|..++..|.+. +
T Consensus 81 ~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~ 159 (590)
T PRK13409 81 HRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGE 159 (590)
T ss_pred EEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccC
Confidence 346653 4688887 7889999999999999999999999999878888753 1
Q ss_pred --EEE--EEecccc-----C---------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 181 --VIW--VVVSKEL-----K---------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 181 --~~~--v~v~~~~-----~---------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+ -.+.+.. + ......++++.+++.... ...++|++++..|+++|..++.+++||+
T Consensus 160 ~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE 238 (590)
T PRK13409 160 IKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238 (590)
T ss_pred cceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 000 0111110 1 122346678888885321 2344589999999999999999999996
No 215
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.19 E-value=1.8e-10 Score=92.49 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=66.4
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------EEEEEeccc------c--C------------
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------VIWVVVSKE------L--K------------ 191 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------~~~v~v~~~------~--~------------ 191 (237)
.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..++ .++ + +
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v--~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYV--PQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEe--cccccccCCCCccHHHHHHhccccc
Confidence 35678999999999999999999999998777774321 1111 111 0 0
Q ss_pred ----------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.+++.... ...+.|++++..|+++|..++.+|+||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE 139 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE 139 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 112345677888875321 1234589999999999999999999996
No 216
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.19 E-value=4.3e-11 Score=107.69 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceEE---------------------------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDIV--------------------------- 181 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~~--------------------------- 181 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|.. ++..|.+.+.
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 10 FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred ECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccc
Confidence 45556789999999999999999999999999999999985 4666653211
Q ss_pred --------------------EEEEeccc-c------CH------------------HHHHHHHHHHCCCCCC----CcCC
Q 044827 182 --------------------IWVVVSKE-L------KL------------------ERIQEDIGKKIRLPTD----SWKN 212 (237)
Q Consensus 182 --------------------~~v~v~~~-~------~~------------------~~~~~~il~~~~~~~~----~~~~ 212 (237)
....+.++ . +. ...+.++++.+++... ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 169 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccC
Confidence 01122221 0 10 1234457788888532 1234
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 213 RSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 213 ~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++|++++..|+++|..+|.+|+||+
T Consensus 170 SgGq~qrv~iA~al~~~p~lllLDE 194 (520)
T TIGR03269 170 SGGEKQRVVLARQLAKEPFLFLADE 194 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeeC
Confidence 5699999999999999999999996
No 217
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=2e-11 Score=101.48 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCC---CcceE----------------EEEEEecccc-----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGG---HNFDI----------------VIWVVVSKEL----- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~---~~f~~----------------~~~v~v~~~~----- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.. |.+.+ ..++ .++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v--~q~~~~~~~ 98 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIV--FQNPDNQFV 98 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEE--EECHHHhhc
Confidence 47888899999999999999999999999999999986655 43211 1111 1110
Q ss_pred --C---------------H---HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K---------------L---ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~---------------~---~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ . ......+++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 99 GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0 0 1234567788887532 12334589999999999999999999996
No 218
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.18 E-value=2.7e-11 Score=109.77 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=78.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEEEecccc-------CH--------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWVVVSKEL-------KL-------- 192 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v~v~~~~-------~~-------- 192 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|...+. ....+.++. +.
T Consensus 334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 413 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGL 413 (556)
T ss_pred ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhc
Confidence 455568999999999999999999999999999999999987888864321 011222211 11
Q ss_pred --------HHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 --------ERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 --------~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.+++.+++... ....++|++++..|++++..++.+||||+
T Consensus 414 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 471 (556)
T PRK11819 414 DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE 471 (556)
T ss_pred ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1123467888888521 12344599999999999999999999996
No 219
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=5e-11 Score=100.96 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc----CCCcceE--E----------------EEEEecccc--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY----GGHNFDI--V----------------IWVVVSKEL-- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~----~~~~f~~--~----------------~~v~v~~~~-- 190 (237)
..++++++.+..|++++|+|+||+|||||++.|.|..++ ..|.+.+ . .-..+.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 478999999999999999999999999999999998742 3442211 0 011122211
Q ss_pred ------C-------------------HHHHHHHHHHHCCCCC-------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------K-------------------LERIQEDIGKKIRLPT-------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------~-------------------~~~~~~~il~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+|+.. .....++|++++..|+++|..++.+||+|+
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 0123456788888853 112345699999999999999999999996
No 220
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.18 E-value=2.1e-11 Score=98.72 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc-----CH---
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL-----KL--- 192 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~-----~~--- 192 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .....+.++. +.
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 95 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence 4678889999999999999999999999999999998777774311 0011122211 00
Q ss_pred ---------HHHHH---------HHHHHC--CCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ---------ERIQE---------DIGKKI--RLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ---------~~~~~---------~il~~~--~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+. +++..+ ++.. .....++|++++..|++++..+|.+|+||+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 164 (237)
T cd03252 96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDE 164 (237)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 11111 122222 2211 112344589999999999999999999996
No 221
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=2.4e-11 Score=98.18 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----CH--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL-----KL-- 192 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~-----~~-- 192 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ .+. .+.++. +.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG-LVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE-EeCCCCeeccccHHH
Confidence 4788899999999999999999999999999999998788885421 011 111110 00
Q ss_pred ----------HHHH---------HHHHHHC--CCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ----------ERIQ---------EDIGKKI--RLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ----------~~~~---------~~il~~~--~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.... ..+++.+ ++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE 164 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDE 164 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0111 1222223 2221 112344589999999999999999999996
No 222
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=4.4e-11 Score=99.58 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc--c---CCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC--Y---GGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~--~---~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|... + ..|.+.+ . ....+.++
T Consensus 49 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 128 (286)
T PRK14275 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128 (286)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCC
Confidence 444457889999999999999999999999999999999642 2 5564321 0 01122222
Q ss_pred cC------------------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 LK------------------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~~------------------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. ....+..+++.+++.. .....++|++++..|+++|..++.+||||+
T Consensus 129 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 208 (286)
T PRK14275 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDE 208 (286)
T ss_pred CCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 10 0112334556666521 112334589999999999999999999996
No 223
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=6.6e-11 Score=99.92 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE------E---------------E--------E-
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV------I---------------W--------V- 184 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~------~---------------~--------v- 184 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+. . + +
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 48999999999999999999999999999999999987777743210 0 0 1
Q ss_pred Eecccc-------C------------------HHHHHHHHHHHCCCCC-C----CcCCCCHHHHHHHHHHHhhcCCcEEE
Q 044827 185 VVSKEL-------K------------------LERIQEDIGKKIRLPT-D----SWKNRSIENEARDIYNILRKKKFLLL 234 (237)
Q Consensus 185 ~v~~~~-------~------------------~~~~~~~il~~~~~~~-~----~~~~~~~~~~~~~l~~~l~~~~~Llv 234 (237)
.+.++. + ......++++.+++.. . ....++|++++..|+++|..++.+||
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 122211 0 1123455777888852 1 12345699999999999999999999
Q ss_pred ecC
Q 044827 235 LDD 237 (237)
Q Consensus 235 LDd 237 (237)
||+
T Consensus 200 LDE 202 (320)
T PRK13631 200 FDE 202 (320)
T ss_pred EEC
Confidence 996
No 224
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.3e-11 Score=99.10 Aligned_cols=106 Identities=24% Similarity=0.220 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc---cCCCcceE---------------EEEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC---YGGHNFDI---------------VIWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~---~~~~~f~~---------------~~~v~v~~~~-- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|... +..|...+ .+. .+.+..
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~-~~~q~~~l 90 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG-MVFQQPNV 90 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE-EEecCCcc
Confidence 444457889999999999999999999999999999999863 35563211 011 111110
Q ss_pred ---------C--------------HHHHHHHHHHHCCCCC-------C-CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------K--------------LERIQEDIGKKIRLPT-------D-SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~--------------~~~~~~~il~~~~~~~-------~-~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++.. . ....++|++++..|+++|..++.+|+||+
T Consensus 91 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 168 (246)
T PRK14269 91 FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDE 168 (246)
T ss_pred ccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 0112346778888742 1 12234599999999999999999999996
No 225
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.18 E-value=5.5e-11 Score=97.80 Aligned_cols=103 Identities=20% Similarity=0.153 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEE----eccc---------------cCH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVV----VSKE---------------LKL 192 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~----v~~~---------------~~~ 192 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ ..++. +... ++.
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 3577888899999999999999999999999999998777775422 11110 0000 011
Q ss_pred H---HHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 E---RIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ~---~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .....+++.+++.... ...++|++++..|++++..+|.+|+||+
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE 169 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE 169 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 1 1123355556654311 2344589999999999999999999996
No 226
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=5.5e-11 Score=99.12 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------------EEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------------WVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------------~v~v~~~~------ 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ .. -..+.++.
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 4788999999999999999999999999999999998787774311 00 01222211
Q ss_pred ---------C----------HHHHHHHHHHHCCCCCC----C-cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------K----------LERIQEDIGKKIRLPTD----S-WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~----------~~~~~~~il~~~~~~~~----~-~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++... . ...++|++++..|+++|..+|.+||||+
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE 170 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE 170 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 0 01234566777787421 1 2234599999999999999999999996
No 227
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=3.1e-11 Score=108.25 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=77.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc--CCCcceE-----------------EEEEEeccc-
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY--GGHNFDI-----------------VIWVVVSKE- 189 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~--~~~~f~~-----------------~~~v~v~~~- 189 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++ .+|.+.+ ..++ .++
T Consensus 14 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~ 91 (506)
T PRK13549 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAII--HQEL 91 (506)
T ss_pred EeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEE--Eecc
Confidence 35555689999999999999999999999999999999999854 5664311 1111 111
Q ss_pred -----------------------cC---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 -----------------------LK---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 -----------------------~~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ ....+.++++.+++.... ...++|++++..|+++|..+|.+||||+
T Consensus 92 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE 169 (506)
T PRK13549 92 ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE 169 (506)
T ss_pred ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 112356778888885321 1334599999999999999999999996
No 228
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.18 E-value=7.7e-11 Score=96.36 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhc--cccCCCcceE-------------E--EEEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNN--FCYGGHNFDI-------------V--IWVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~--~~~~~~~f~~-------------~--~~v~v~~~~--- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|. .++..|.+.+ . ....+.+..
T Consensus 17 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~ 96 (252)
T CHL00131 17 VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEI 96 (252)
T ss_pred eCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccc
Confidence 3333578999999999999999999999999999999996 3456664311 0 011122210
Q ss_pred ---CH-------------------------HHHHHHHHHHCCCCC----CCc-C-CCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 191 ---KL-------------------------ERIQEDIGKKIRLPT----DSW-K-NRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 191 ---~~-------------------------~~~~~~il~~~~~~~----~~~-~-~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
+. .....++++.+++.. ... . .++|++++..|+++|..+|.+||||
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 176 (252)
T CHL00131 97 PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILD 176 (252)
T ss_pred ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 00 012345677777752 111 2 4569999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 177 E 177 (252)
T CHL00131 177 E 177 (252)
T ss_pred C
Confidence 6
No 229
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=1.1e-11 Score=100.47 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~----- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.++.
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 34445788999999999999999999999999999999998777774311 0011112110
Q ss_pred -CH----------------HHHHHHHHHHC-CCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -KL----------------ERIQEDIGKKI-RLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~~----------------~~~~~~il~~~-~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ...+..+++.+ ++.. .....++|++++..|++++..+|.+|+||+
T Consensus 95 ~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 95 MTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred CcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 00 11123344444 2321 112344589999999999999999999996
No 230
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.18 E-value=4e-11 Score=94.27 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceE--E---------EEEEecccc---CHHHHHH
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDI--V---------IWVVVSKEL---KLERIQE 197 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~--~---------~~v~v~~~~---~~~~~~~ 197 (237)
...+++++..+..|++++|+|+||+|||||+++|+|.. ++..|.+.+ . ....+.++. ....+..
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 35788999999999999999999999999999999998 788886422 0 011222221 1112222
Q ss_pred HHHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 198 DIGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 198 ~il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.-...+ ...++|++++..|+++|..++.+|+||+
T Consensus 102 ~i~~~~~~----~~LS~G~~qrv~laral~~~p~illlDE 137 (194)
T cd03213 102 TLMFAAKL----RGLSGGERKRVSIALELVSNPSLLFLDE 137 (194)
T ss_pred HHHHHHHh----ccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 22110001 0455789999999999999999999996
No 231
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.18 E-value=7.3e-11 Score=97.39 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-E--------------EEEeccc----c---
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-I--------------WVVVSKE----L--- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-~--------------~v~v~~~----~--- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . + -..+.++ +
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 4788999999999999999999999999999999998777775321 0 0 0011111 0
Q ss_pred -C-------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K-------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~-------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.+++..+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE 177 (268)
T PRK10419 106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE 177 (268)
T ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 01134567788887421 12345699999999999999999999996
No 232
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.18 E-value=3e-11 Score=109.34 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=78.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----EEEEEeccc-------cCH------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----VIWVVVSKE-------LKL------ 192 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~~~v~v~~~-------~~~------ 192 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..++ .++ .+.
T Consensus 332 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~ 409 (552)
T TIGR03719 332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYV--DQSRDALDPNKTVWEEISG 409 (552)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEE--eCCccccCCCCcHHHHHHh
Confidence 45556899999999999999999999999999999999998777786432 1122 211 010
Q ss_pred ----------HHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ----------ERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ----------~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.+++.+++... ....++|++++..|+++|..++.+|+||+
T Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE 469 (552)
T TIGR03719 410 GLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469 (552)
T ss_pred hccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 1123467888888521 12344599999999999999999999996
No 233
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.5e-11 Score=100.12 Aligned_cols=108 Identities=21% Similarity=0.211 Sum_probs=72.4
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE----------------EEEEEecc
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI----------------VIWVVVSK 188 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~----------------~~~v~v~~ 188 (237)
.|+....++++++.+..|++++|+|+||+|||||+++|+|... +..|.+.+ .....+.+
T Consensus 30 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 109 (268)
T PRK14248 30 YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ 109 (268)
T ss_pred EeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEec
Confidence 3555568999999999999999999999999999999999642 34563211 00012222
Q ss_pred cc-----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 189 EL-----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 189 ~~-----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
.. +. ......++..+++.. .....++|++++..|+++|..++.+|+||
T Consensus 110 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 11 00 011234455565521 11234458999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 190 E 190 (268)
T PRK14248 190 E 190 (268)
T ss_pred C
Confidence 6
No 234
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=7.8e-11 Score=98.27 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-----------------EEEEecccc------
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-----------------IWVVVSKEL------ 190 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-----------------~~v~v~~~~------ 190 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . ....+.++.
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 105 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ 105 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence 788899999999999999999999999999999998777774311 0 001122211
Q ss_pred -CH------------------HHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -KL------------------ERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~~------------------~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ...+..+++.++++.. ....++|++++..|+++|..+|.+||||+
T Consensus 106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE 176 (289)
T PRK13645 106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176 (289)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 00 0122356677777321 12334599999999999999999999996
No 235
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.17 E-value=6.4e-11 Score=107.19 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------E-EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------V-IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~-~~v~v~~~~--------- 190 (237)
...+++++..+..|+.++|+|++|+|||||++.++|..++.+|...+ + ....+.++.
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 415 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP 415 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhcc
Confidence 34799999999999999999999999999999999999888885321 0 011223321
Q ss_pred ----CHHHHHHHHHHHCCCCCC---------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----KLERIQEDIGKKIRLPTD---------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~~~~~~~~il~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++.+++... ....++|++++..|++++..+|.+|+|||
T Consensus 416 n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE 475 (547)
T PRK10522 416 EGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475 (547)
T ss_pred ccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 012344567777776432 12345699999999999999999999997
No 236
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-10 Score=101.35 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEec---------cc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVS---------KE 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~---------~~ 189 (237)
..++++++.+..|+.|+|+|++|+|||||++.+.+...+.+|+... ..|++=+ ++
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 5899999999999999999999999999999999988888885422 1111100 00
Q ss_pred c------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .-.+.+.+++++.|+.+ ....-++|+++|..|+++|.+...+++||+
T Consensus 432 L~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDE 500 (573)
T COG4987 432 LRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDE 500 (573)
T ss_pred HhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecC
Confidence 0 11244566777776631 111234699999999999999999999996
No 237
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.9e-11 Score=109.44 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v~v~~~~--- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+ +.+..
T Consensus 14 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~--v~q~~~~~ 91 (501)
T PRK11288 14 FPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI--IYQELHLV 91 (501)
T ss_pred ECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE--EEechhcc
Confidence 45445789999999999999999999999999999999998777775321 111 11110
Q ss_pred ---------------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+++.... ...++|++++..|+++|..++.+||||+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 166 (501)
T PRK11288 92 PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE 166 (501)
T ss_pred CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 0 012345678888885321 1234599999999999999999999996
No 238
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=4.5e-11 Score=94.74 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEE----eccccC----------------
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVV----VSKELK---------------- 191 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~----v~~~~~---------------- 191 (237)
....+++++++.+..|+.++|+|.||+|||||+++|+|-.+|++|...+.--+. ++..++
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 334678999999999999999999999999999999999999999876643321 222221
Q ss_pred ------HHHHHHHHHHHCCCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------LERIQEDIGKKIRLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------~~~~~~~il~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+...+|++-..+.+ .-...++|+..|..++-+..-+|.+||+|+
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE 173 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE 173 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh
Confidence 1233344444333321 112445799999999999999999999995
No 239
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.17 E-value=3.8e-11 Score=101.77 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC---CCcceE--E----------------EEEEecccc--
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG---GHNFDI--V----------------IWVVVSKEL-- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~---~~~f~~--~----------------~~v~v~~~~-- 190 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++. +|.+.+ . .-..+.++.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 35789999999999999999999999999999999998653 563311 0 001122221
Q ss_pred ------CH-------------------HHHHHHHHHHCCCCCC-------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------KL-------------------ERIQEDIGKKIRLPTD-------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------~~-------------------~~~~~~il~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. .....++++.++++.. ....++|++++..|+++|..+|.|||+|+
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE 187 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 187 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 1233456777887531 12345699999999999999999999996
No 240
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.17 E-value=4.8e-11 Score=107.40 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E------------------EEEecccc---
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I------------------WVVVSKEL--- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~------------------~v~v~~~~--- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. . ...+.++.
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 47899999999999999999999999999999999987777754321 0 01222221
Q ss_pred ---CH-----------------HHHHHHHHHHCCCCCC---------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---KL-----------------ERIQEDIGKKIRLPTD---------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~~-----------------~~~~~~il~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDE 453 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453 (520)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 1123457788888531 12334599999999999999999999996
No 241
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.7e-11 Score=99.11 Aligned_cols=107 Identities=21% Similarity=0.168 Sum_probs=72.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE-----E-----------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI-----V-----------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~-----~-----------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ . .-..+.++
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecC
Confidence 4445678999999999999999999999999999999999754 2554211 0 00111111
Q ss_pred c------CH--------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 190 L------KL--------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 190 ~------~~--------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
. +. .....++++.+++.. .....++|++++..|+++|..+|.+|||
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 00 012345566677531 1112345899999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 174 DE 175 (253)
T PRK14267 174 DE 175 (253)
T ss_pred cC
Confidence 96
No 242
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.17 E-value=3.3e-11 Score=107.65 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=76.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v~v~~~~--- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ .++.
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~ 85 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV--HQELNLV 85 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE--ecccccc
Confidence 44445789999999999999999999999999999999998777774311 1111 1110
Q ss_pred ---------------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|+++|..+|.+||||+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 012345677888875321 2344599999999999999999999996
No 243
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.17 E-value=5.9e-11 Score=102.50 Aligned_cols=104 Identities=15% Similarity=0.260 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce-----EEEEE---------Eecc-----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD-----IVIWV---------VVSK----------- 188 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~-----~~~~v---------~v~~----------- 188 (237)
...++++++.+..|+.++|+||+|+|||||++.+.|-.++.+|... ..-|- +..|
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIae 428 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE 428 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHH
Confidence 4678999999999999999999999999999999999988888532 22221 1111
Q ss_pred -------ccCHHHHH--------HHHHHHCCCC------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 -------ELKLERIQ--------EDIGKKIRLP------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 -------~~~~~~~~--------~~il~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.+..+++ .+++-.+-.. ......++|++|+..|+++|.+.|+|+|||+
T Consensus 429 NIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE 498 (580)
T COG4618 429 NIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE 498 (580)
T ss_pred HHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC
Confidence 12333332 1222222110 1112344699999999999999999999996
No 244
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.16 E-value=5.3e-11 Score=95.38 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E--------------EEE-Eecccc------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V--------------IWV-VVSKEL------ 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~--------------~~v-~v~~~~------ 190 (237)
...++++++.+..|++++|+|+||+|||||++.|+|..++.+|...+ . ..+ .+.++.
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 34788899999999999999999999999999999998777774311 0 001 111110
Q ss_pred C-------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K-------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~-------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...+.|++++..|+++|..+|.+|+||+
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDE 167 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADE 167 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 112346677888875321 2334589999999999999999999996
No 245
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.4e-11 Score=100.20 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ . ....+.+.
T Consensus 29 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 108 (267)
T PRK14235 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQK 108 (267)
T ss_pred ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecC
Confidence 4444578889999999999999999999999999999998743 5664311 0 00112221
Q ss_pred c-----C--------------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 190 L-----K--------------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 190 ~-----~--------------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
. + .......+++.+++.. .....++|++++..|+++|..+|.+|+||
T Consensus 109 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 188 (267)
T PRK14235 109 PNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188 (267)
T ss_pred CCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 0 0112345677777742 11233459999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 189 E 189 (267)
T PRK14235 189 E 189 (267)
T ss_pred C
Confidence 6
No 246
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.16 E-value=7.3e-11 Score=94.92 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc---------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL--------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~--------- 190 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+. .+.+..
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~~ 106 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS-LVGQEPVLFARSLQD 106 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEE-EEecccHHHhhhHHH
Confidence 4789999999999999999999999999999999998777775321 011 111110
Q ss_pred ---------CHHH--------HHHHHHHHC--CCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLER--------IQEDIGKKI--RLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~--------~~~~il~~~--~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.... .+..+++.+ |+... ....++|++++..|+++|..+|.+|+||+
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 176 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE 176 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0000 013445555 44321 12234599999999999999999999996
No 247
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=9.6e-11 Score=94.10 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------------------EEEEEe-cc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------------------VIWVVV-SK 188 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------------------~~~v~v-~~ 188 (237)
..+.+|++.+..|++++++|+||+||||++|++.|...|.+|+... ..|-.- .+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 3788999999999999999999999999999999999888885433 334321 11
Q ss_pred ccC------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 ELK------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 ~~~------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++. ..+....+.+-+++... -...+.|++++..|+.+|.++|.+|+||+
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 111 12333445555565421 12344599999999999999999999996
No 248
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.16 E-value=2.4e-11 Score=99.95 Aligned_cols=105 Identities=13% Similarity=0.203 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCC---Ccce-----E----------------EEEEEe
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGG---HNFD-----I----------------VIWVVV 186 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~---~~f~-----~----------------~~~v~v 186 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++.. |.+. . ..+ +
T Consensus 14 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~--~ 91 (262)
T PRK09984 14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGY--I 91 (262)
T ss_pred eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEE--E
Confidence 454567899999999999999999999999999999999985532 4211 0 111 1
Q ss_pred cccc------C--------------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCC
Q 044827 187 SKEL------K--------------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKK 230 (237)
Q Consensus 187 ~~~~------~--------------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~ 230 (237)
.++. + ......++++.+++... ....++|++++..|+++|..+|
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 171 (262)
T PRK09984 92 FQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQA 171 (262)
T ss_pred ccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCC
Confidence 1110 0 01234567777887531 1233459999999999999999
Q ss_pred cEEEecC
Q 044827 231 FLLLLDD 237 (237)
Q Consensus 231 ~LlvLDd 237 (237)
.+|+||+
T Consensus 172 ~llllDE 178 (262)
T PRK09984 172 KVILADE 178 (262)
T ss_pred CEEEecC
Confidence 9999996
No 249
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=6.5e-11 Score=106.21 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------E----EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------V----IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------~----~~v~v~~~~--------- 190 (237)
...++++++.+..|+++++|||+|.||||++.++.+.+.|.+|..-. . --..|+|++
T Consensus 481 ~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~e 560 (716)
T KOG0058|consen 481 VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRE 560 (716)
T ss_pred chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHH
Confidence 35899999999999999999999999999999999999898885321 1 111344432
Q ss_pred ---------CHHHHH--------HHHHHHCCC--C----CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLERIQ--------EDIGKKIRL--P----TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~~~--------~~il~~~~~--~----~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.+++. .+.+..+-- + ......++|++||..|||+|..+|.+||||+
T Consensus 561 NI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDE 630 (716)
T KOG0058|consen 561 NIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDE 630 (716)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEec
Confidence 122221 112222211 0 1112344699999999999999999999996
No 250
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=6.8e-11 Score=95.28 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=69.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EEE----------------------------EEecccc----
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VIW----------------------------VVVSKEL---- 190 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~~----------------------------v~v~~~~---- 190 (237)
....+.+|.|++|+|||||+++|.|...+..|.... ..| .+|..+.
T Consensus 22 p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~ 101 (352)
T COG4148 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM 101 (352)
T ss_pred CCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence 334899999999999999999999999888885432 111 1222221
Q ss_pred --CHHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --KLERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....-+.++...+|+.+- ....++|++|+..|.++|.+.|.||+||+
T Consensus 102 ~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE 154 (352)
T COG4148 102 WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred cccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC
Confidence 224456778888888642 23456799999999999999999999996
No 251
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=6.9e-11 Score=95.67 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=73.7
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE------------EEEEecccc------C------
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV------------IWVVVSKEL------K------ 191 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~------------~~v~v~~~~------~------ 191 (237)
.++++++.+..|++++|+|+||+|||||+++++|..++..|.+.+. ....+.++. +
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 6888889999999999999999999999999999987877754220 001111110 0
Q ss_pred ------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|++++..++.+++||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 111234567778875311 2345699999999999999999999996
No 252
>PLN03073 ABC transporter F family; Provisional
Probab=99.16 E-value=9.2e-11 Score=108.58 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--E-EEEecccc--------C------------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--I-WVVVSKEL--------K------------ 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--~-~v~v~~~~--------~------------ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+. . ...+.+.. +
T Consensus 523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~ 602 (718)
T PLN03073 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGV 602 (718)
T ss_pred eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCC
Confidence 47899999999999999999999999999999999988888865321 0 01111110 0
Q ss_pred HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..++..+++... ....++|++++..|++++..++.+||||+
T Consensus 603 ~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 603 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 12234667888888531 12344599999999999999999999996
No 253
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.1e-11 Score=100.21 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=76.2
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE----------------EEEEEec
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI----------------VIWVVVS 187 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~----------------~~~v~v~ 187 (237)
..||....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ .....+.
T Consensus 16 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 95 (261)
T PRK14263 16 IFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVF 95 (261)
T ss_pred EEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEe
Confidence 346766789999999999999999999999999999999998754 3553211 0011222
Q ss_pred ccc-----CH-----------------HHHHHHHHHHCCCCCC--------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 188 KEL-----KL-----------------ERIQEDIGKKIRLPTD--------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 188 ~~~-----~~-----------------~~~~~~il~~~~~~~~--------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++. +. .....++++.+++... ....++|++++..|+++|..++.+|+||+
T Consensus 96 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (261)
T PRK14263 96 QQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 (261)
T ss_pred cCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 211 00 1233556777776321 11245699999999999999999999996
No 254
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.16 E-value=8.7e-11 Score=105.42 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=74.3
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-------------EEEEeccc---------cC
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-------------IWVVVSKE---------LK 191 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-------------~~v~v~~~---------~~ 191 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . -..++.+. .+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 488899999999999999999999999999999998677775421 0 01122221 00
Q ss_pred ---------------------HHHHHHHHHHHCCCC-CCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------------------LERIQEDIGKKIRLP-TDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------------------~~~~~~~il~~~~~~-~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++. ... ...++|++++..|+++|..++.+||||+
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 011234677888885 221 2345699999999999999999999996
No 255
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.15 E-value=5.5e-11 Score=106.51 Aligned_cols=105 Identities=20% Similarity=0.306 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc--CCCcceE-----------------EEEEEecccc-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY--GGHNFDI-----------------VIWVVVSKEL- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~--~~~~f~~-----------------~~~v~v~~~~- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ .+|.+.+ ..+ +.+..
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~--v~q~~~ 88 (500)
T TIGR02633 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVI--IHQELT 88 (500)
T ss_pred eCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEE--Eeeccc
Confidence 4544578999999999999999999999999999999998854 4664311 111 11110
Q ss_pred ------------------------C---HHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------------------K---LERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------------------~---~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 89 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 89 LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 0 012345678888885321 1344699999999999999999999996
No 256
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.5e-11 Score=98.31 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE---E------------E-EEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI---V------------I-WVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~---~------------~-~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ +..|...+ . . -..+.++
T Consensus 14 ~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (251)
T PRK14251 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQ 93 (251)
T ss_pred ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecC
Confidence 444457888999999999999999999999999999999874 24553211 0 0 0112221
Q ss_pred c-----C----------------H---HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K----------------L---ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~----------------~---~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + . ......+++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE 173 (251)
T PRK14251 94 PTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE 173 (251)
T ss_pred CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 1 0 0 112344566667621 112334589999999999999999999996
No 257
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.15 E-value=3.2e-11 Score=109.69 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~---------- 190 (237)
..+++++..+..|+.++|+|++|+|||||++.++|..++.+|...+ . .-..+.|+.
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence 5799999999999999999999999999999999999888885321 0 001122221
Q ss_pred -------CHHHHHHHHHHHCCCCCC--------------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------KLERIQEDIGKKIRLPTD--------------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~~~~~~~~il~~~~~~~~--------------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++..++... ....++|++++..|++++..++.+|||||
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 112344556676665321 11234589999999999999999999997
No 258
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=4.6e-11 Score=97.97 Aligned_cols=108 Identities=23% Similarity=0.279 Sum_probs=74.9
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce-----------E---------EEEEEeccc
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD-----------I---------VIWVVVSKE 189 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~-----------~---------~~~v~v~~~ 189 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|...+..|.+. . .....+.+.
T Consensus 19 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~ 98 (257)
T PRK14246 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQ 98 (257)
T ss_pred ecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccC
Confidence 35666789999999999999999999999999999999999866654210 0 000111111
Q ss_pred c------C----------------H---HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 190 L------K----------------L---ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 190 ~------~----------------~---~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
. + . ...+..+++.+++.. .....+.|++++..|++++..+|.+++||
T Consensus 99 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllD 178 (257)
T PRK14246 99 PNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178 (257)
T ss_pred CccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 0 0 0 012345566677632 11123458999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 179 E 179 (257)
T PRK14246 179 E 179 (257)
T ss_pred C
Confidence 6
No 259
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1e-10 Score=96.02 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE---EE-------------EEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI---VI-------------WVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~---~~-------------~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ .+ ...+.+.
T Consensus 22 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 101 (258)
T PRK14268 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQK 101 (258)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecC
Confidence 4444578999999999999999999999999999999998743 4563211 00 0111221
Q ss_pred c-----CH------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. .....++++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 102 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 180 (258)
T PRK14268 102 PNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180 (258)
T ss_pred CccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 00 112345677777621 111334589999999999999999999996
No 260
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.1e-11 Score=99.87 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=71.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE----------------EEEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI----------------VIWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~----------------~~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|...+ ..|.+.+ .-...+.++
T Consensus 30 ~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~ 109 (274)
T PRK14265 30 YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQR 109 (274)
T ss_pred eCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccC
Confidence 4544578999999999999999999999999999999997632 3453211 000122221
Q ss_pred c-----CH-----------------HHHHHHHHHHCCCC--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-----------------ERIQEDIGKKIRLP--------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-----------------~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ......+++.+++. ......++|++++..|+++|..++.+||||+
T Consensus 110 ~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 187 (274)
T PRK14265 110 PNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE 187 (274)
T ss_pred CccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 1 00 11123345555542 1112234589999999999999999999996
No 261
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=3.3e-11 Score=99.95 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=73.2
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEeccc----c---C--
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKE----L---K-- 191 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~----~---~-- 191 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ .+. .+.++ + +
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG-MVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE-EEEECHHHhhccCCHH
Confidence 688899999999999999999999999999999999887775321 011 11111 0 0
Q ss_pred -------------H---HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -------------L---ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -------------~---~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......+++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE 166 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 1123456677776421 12344589999999999999999999996
No 262
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.15 E-value=3.2e-11 Score=111.96 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~--------- 190 (237)
...+++++..+..|+.++|+|++|+|||||++.+.|...+.+|..-+ . ....+.|+.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHH
Confidence 45799999999999999999999999999999999999888885321 0 011222221
Q ss_pred -------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++..++.. .....++|++|+..|+|++..+|.+|+||+
T Consensus 546 Ni~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE 614 (686)
T TIGR03797 546 NIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 (686)
T ss_pred HHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11223345555554421 011234599999999999999999999997
No 263
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.15 E-value=5.5e-11 Score=109.00 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E--------------------------EEEEe
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V--------------------------IWVVV 186 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~--------------------------~~v~v 186 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . -...+
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 4789999999999999999999999999999999998666664311 0 00122
Q ss_pred cccc--------CH-------------------HHHHHHHHHHCCCCC-------CCcCCCCHHHHHHHHHHHhhcCCcE
Q 044827 187 SKEL--------KL-------------------ERIQEDIGKKIRLPT-------DSWKNRSIENEARDIYNILRKKKFL 232 (237)
Q Consensus 187 ~~~~--------~~-------------------~~~~~~il~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~L 232 (237)
.++. +. ...+.++++.+|++. .....++|++++..|+++|..++.+
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l 189 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 2211 10 123345788888852 1123456999999999999999999
Q ss_pred EEecC
Q 044827 233 LLLDD 237 (237)
Q Consensus 233 lvLDd 237 (237)
||||+
T Consensus 190 LllDE 194 (623)
T PRK10261 190 LIADE 194 (623)
T ss_pred EEEeC
Confidence 99996
No 264
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.15 E-value=4.3e-11 Score=98.70 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE----------------EEEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI----------------VIWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~----------------~~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ +..|.+.+ .....+.+.
T Consensus 30 ~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 109 (267)
T PRK14237 30 YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQR 109 (267)
T ss_pred ECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecC
Confidence 444567899999999999999999999999999999999874 24664311 001122221
Q ss_pred c-----C-------------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K-------------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~-------------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + ......++++.+++.. .....++|++++..|++++..++.+|+||+
T Consensus 110 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 189 (267)
T PRK14237 110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE 189 (267)
T ss_pred CccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 0 0112234466666531 112334589999999999999999999996
No 265
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.14 E-value=3.3e-11 Score=99.57 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC--------CCcceE-----E---------EEEEecc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG--------GHNFDI-----V---------IWVVVSK 188 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~--------~~~f~~-----~---------~~v~v~~ 188 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++. .|...+ . ....+.+
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q 90 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQ 90 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecc
Confidence 44446789999999999999999999999999999999998655 553211 0 0011111
Q ss_pred cc------C----------------------HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhh---------
Q 044827 189 EL------K----------------------LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILR--------- 227 (237)
Q Consensus 189 ~~------~----------------------~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~--------- 227 (237)
.. + .......+++.+++... ....++|++++..|+++|.
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~ 170 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170 (272)
T ss_pred cCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccC
Confidence 10 0 01234567777877531 1234458999999999999
Q ss_pred cCCcEEEecC
Q 044827 228 KKKFLLLLDD 237 (237)
Q Consensus 228 ~~~~LlvLDd 237 (237)
.++.+|+||+
T Consensus 171 ~~p~lllLDE 180 (272)
T PRK13547 171 QPPRYLLLDE 180 (272)
T ss_pred CCCCEEEEcC
Confidence 4899999996
No 266
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.14 E-value=9.3e-11 Score=105.70 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE------------------EEEEEecccc-
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI------------------VIWVVVSKEL- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~------------------~~~v~v~~~~- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++ .+|.+.+ .-...+.++.
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 578999999999999999999999999999999999854 4564311 0011222221
Q ss_pred ---C-----------------------HHHHHHHHHHHCCCCC-------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---K-----------------------LERIQEDIGKKIRLPT-------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~-----------------------~~~~~~~il~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ....+.++++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 0122345777888853 112345699999999999999999999996
No 267
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.14 E-value=4.6e-11 Score=90.47 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=81.8
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------------------
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------------------- 180 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------------------- 180 (237)
.-||....++.++.....|++|+|+|.+|+||||+++.|.-...|..|....
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 3589999999999999999999999999999999999999888787774322
Q ss_pred ---------EEEEEec--cc-------------cCHHHHHHHHHHHCCCCCCCc----CCCCHHHHHHHHHHHhhcCCcE
Q 044827 181 ---------VIWVVVS--KE-------------LKLERIQEDIGKKIRLPTDSW----KNRSIENEARDIYNILRKKKFL 232 (237)
Q Consensus 181 ---------~~~v~v~--~~-------------~~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~L 232 (237)
..|-+++ ++ ....+....++...|+..... ..++|+|++..|+++|.-.|.+
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~v 173 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEV 173 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCce
Confidence 1221100 00 012334556778888854322 3346999999999999999999
Q ss_pred EEecC
Q 044827 233 LLLDD 237 (237)
Q Consensus 233 lvLDd 237 (237)
+++|+
T Consensus 174 mLFDE 178 (256)
T COG4598 174 MLFDE 178 (256)
T ss_pred EeecC
Confidence 99996
No 268
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=94.82 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=70.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE----------------EEEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI----------------VIWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~----------------~~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ .....+.++
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14240 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQ 92 (250)
T ss_pred ECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecC
Confidence 3434578899999999999999999999999999999997531 3553211 001122222
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ...+.++++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 93 ~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (250)
T PRK14240 93 PNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 00 112233445555421 112344589999999999999999999996
No 269
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.14 E-value=1.1e-10 Score=104.49 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=74.0
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EE------------EEEecccc---------C
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VI------------WVVVSKEL---------K 191 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~------------~v~v~~~~---------~ 191 (237)
.++++++.+..|++++|+|+||+|||||++.|+|..++..|.+.+ .+ ...+.+.. +
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 588999999999999999999999999999999998776665321 00 01122210 0
Q ss_pred ------------------------HHHHHHHHHHHCCCC-CCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------------LERIQEDIGKKIRLP-TDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------------~~~~~~~il~~~~~~-~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++. ... ...++|++++..|+++|..++.+|+||+
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE 421 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE 421 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 012345678888884 211 1334699999999999999999999996
No 270
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.4e-10 Score=104.12 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EE------------EEEeccc-----c----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VI------------WVVVSKE-----L---- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~------------~v~v~~~-----~---- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .+ ...+.+. +
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 4789999999999999999999999999999999998666664321 00 0112211 0
Q ss_pred C---------------------------HHHHHHHHHHHCCCC-CCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K---------------------------LERIQEDIGKKIRLP-TDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~---------------------------~~~~~~~il~~~~~~-~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++. ... ...++|++++..|+++|..++.+||||+
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 0 011245678888885 221 2345699999999999999999999996
No 271
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.4e-11 Score=93.22 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=82.3
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------------------E
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------------------V 181 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------------------~ 181 (237)
+..||....+++++..+..|.+.+|+||||+|||||+-++....+..+|...+ .
T Consensus 8 ~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 45688888999999999999999999999999999999999998777775332 0
Q ss_pred EEEEecc-----------c---cCHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 182 IWVVVSK-----------E---LKLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 182 ~~v~v~~-----------~---~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..++|.+ . ........+.++.+.+..-. ...++|+.++..+|..+......++||+
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence 1111111 0 12344567777777775322 2445788999999999999999999996
No 272
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.1e-10 Score=96.73 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=74.4
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE--E-------------EEEEeccc
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI--V-------------IWVVVSKE 189 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~--~-------------~~v~v~~~ 189 (237)
.|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ . ....+.++
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 109 (276)
T PRK14271 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109 (276)
T ss_pred EECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccC
Confidence 35555689999999999999999999999999999999998753 3553211 0 00122221
Q ss_pred c-----C----------------HH---HHHHHHHHHCCCCCC--------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K----------------LE---RIQEDIGKKIRLPTD--------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~----------------~~---~~~~~il~~~~~~~~--------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + .. ....++++.+++... ....++|++++..|+++|..++.+||||+
T Consensus 110 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE 189 (276)
T PRK14271 110 PNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE 189 (276)
T ss_pred CccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 0 00 112345666776421 12344599999999999999999999996
No 273
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.13 E-value=5.1e-11 Score=111.00 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~--------- 190 (237)
...+++++..+..|+.++|+|++|+|||||++++.|..++.+|...+ .....+.|+.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~e 571 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRD 571 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHH
Confidence 45799999999999999999999999999999999999888885422 0011222221
Q ss_pred --------CHHHHHHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------KLERIQEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------~~~~~~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++..++. ......++|++|+..|+|++..++.+|+||+
T Consensus 572 Ni~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred HhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 0122233444444331 1112344699999999999999999999997
No 274
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.13 E-value=3.2e-11 Score=110.08 Aligned_cols=103 Identities=19% Similarity=0.138 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEeccc---------
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKE--------- 189 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~--------- 189 (237)
....+++++..+..|+.++|+|++|+|||||++.+.+.. +.+|..-. . ....|+|+
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 345799999999999999999999999999999999999 87885421 0 01123332
Q ss_pred ---------cCHHHHHHHHHHHCCC-----------CC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 ---------LKLERIQEDIGKKIRL-----------PT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ---------~~~~~~~~~il~~~~~-----------~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.. .+.+.++..++ +. .....++|++||..|||++..++.+|||||
T Consensus 441 eNI~~g~~~~~~e-ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE 511 (588)
T PRK11174 441 DNVLLGNPDASDE-QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511 (588)
T ss_pred HHhhcCCCCCCHH-HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1222 22333333322 11 112344699999999999999999999997
No 275
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.13 E-value=5.2e-11 Score=110.79 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~---------- 190 (237)
..+++++..+..|++++|+|++|+|||||++.|.|..++.+|..-+ . ....++|+.
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN 574 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN 574 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence 5799999999999999999999999999999999999888885421 0 011223321
Q ss_pred -------CHHHHHHHHHHHCCCC-----------C----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------KLERIQEDIGKKIRLP-----------T----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~~~~~~~~il~~~~~~-----------~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++..++. . ....-++|++|+..|+|++..++.++||||
T Consensus 575 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDE 643 (711)
T TIGR00958 575 IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDE 643 (711)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 1123344455554432 1 011234589999999999999999999997
No 276
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=6.4e-11 Score=96.85 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc--c---CCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC--Y---GGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~--~---~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ + ..|.+.+ . ....+.++
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (252)
T PRK14256 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93 (252)
T ss_pred eCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecC
Confidence 343457889999999999999999999999999999999863 2 3453211 0 00111221
Q ss_pred c------C-------------------HHHHHHHHHHHCCCCC-------C-CcCCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 190 L------K-------------------LERIQEDIGKKIRLPT-------D-SWKNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 190 ~------~-------------------~~~~~~~il~~~~~~~-------~-~~~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
. + .......+++.+++.. . ....++|++++..|+++|..++.+|+||
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 0 0122345666777632 1 1223458999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 174 E 174 (252)
T PRK14256 174 E 174 (252)
T ss_pred C
Confidence 6
No 277
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=7.4e-11 Score=92.57 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceE----------EEEEEecccc---CHHHHHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDI----------VIWVVVSKEL---KLERIQEDI 199 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~----------~~~v~v~~~~---~~~~~~~~i 199 (237)
..++++++.+..|++++|+|+||+|||||+++|+|.. ++..|.+.+ .....+.+.. ....+...+
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREAL 100 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHH
Confidence 4678888999999999999999999999999999964 256675321 0112223321 111222222
Q ss_pred HHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 200 GKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.-...+ ...++|++++..|++++..++.+|+||+
T Consensus 101 ~~~~~~----~~LSgGe~qrv~la~al~~~p~vlllDE 134 (192)
T cd03232 101 RFSALL----RGLSVEQRKRLTIGVELAAKPSILFLDE 134 (192)
T ss_pred HHHHHH----hcCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence 110000 0455789999999999999999999996
No 278
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=6.7e-11 Score=97.41 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=70.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|... +..|...+ . ....+.++
T Consensus 20 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 99 (264)
T PRK14243 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQK 99 (264)
T ss_pred ECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccC
Confidence 454467899999999999999999999999999999998753 13453211 0 00112221
Q ss_pred c-----C-----------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K-----------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~-----------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + .......+++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 100 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 177 (264)
T PRK14243 100 PNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE 177 (264)
T ss_pred CccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 0 0112233445555421 112344589999999999999999999996
No 279
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.12 E-value=4.9e-11 Score=105.34 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----EEEEE--eccccC---------------H
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----VIWVV--VSKELK---------------L 192 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~~~v~--v~~~~~---------------~ 192 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ ..... .....+ .
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~ 117 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTK 117 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCH
Confidence 3688899999999999999999999999999999998788886432 11110 011111 1
Q ss_pred ---HHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ---ERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ---~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+++.+++... ....++|++++..|+++|..+|.+||||+
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE 169 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE 169 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 1123356777777432 12344589999999999999999999996
No 280
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.12 E-value=6.2e-11 Score=96.07 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF 178 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f 178 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 60 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE
Confidence 36888899999999999999999999999999999987788854
No 281
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.12 E-value=1.1e-10 Score=95.31 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=70.8
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc-----------
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL----------- 190 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~----------- 190 (237)
.++++++.+..|++++|+|+||+|||||+++|+|.. +..|.+.+ .....+.+..
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 578888999999999999999999999999999987 44664311 0011122210
Q ss_pred ---------C---HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhc-------CCcEEEecC
Q 044827 191 ---------K---LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRK-------KKFLLLLDD 237 (237)
Q Consensus 191 ---------~---~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~-------~~~LlvLDd 237 (237)
+ ......++++.+++... ....++|++++..|+++|.. ++.+|+||+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE 159 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE 159 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC
Confidence 0 01234667888887531 12334589999999999986 568999996
No 282
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.12 E-value=1.1e-10 Score=93.93 Aligned_cols=104 Identities=20% Similarity=0.192 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc---cCCCcceE----------E-EEEEecccc------CHH
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC---YGGHNFDI----------V-IWVVVSKEL------KLE 193 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~---~~~~~f~~----------~-~~v~v~~~~------~~~ 193 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..+ +..|...+ . ....+.++. +..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 457889999999999999999999999999999999986 56664211 0 011122210 000
Q ss_pred ---------------------HHHHH-HHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 194 ---------------------RIQED-IGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 194 ---------------------~~~~~-il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..... +++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDE 169 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE 169 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 01122 56666654211 2334589999999999999999999996
No 283
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=5.3e-11 Score=97.74 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=71.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc--c---CCCcceE-----E-----------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC--Y---GGHNFDI-----V-----------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~--~---~~~~f~~-----~-----------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|... + ..|.+.+ . ....+.++
T Consensus 22 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 101 (259)
T PRK14274 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQK 101 (259)
T ss_pred ECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecC
Confidence 444457888899999999999999999999999999999864 2 3564211 0 00112221
Q ss_pred c-----C----------------H---HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K----------------L---ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~----------------~---~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + . ......+++.+++.. .....++|++++..|+++|..++.+++||+
T Consensus 102 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDE 181 (259)
T PRK14274 102 GNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE 181 (259)
T ss_pred CcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 0 0 112234566666631 111234589999999999999999999996
No 284
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=7.7e-11 Score=96.18 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE---------------EEEEEecccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI---------------VIWVVVSKEL 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~---------------~~~v~v~~~~ 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|...+ .....+.++.
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~ 92 (249)
T PRK14253 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92 (249)
T ss_pred ECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCC
Confidence 4444578999999999999999999999999999999998753 2453211 0011122211
Q ss_pred -----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....+.++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 93 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 171 (249)
T PRK14253 93 NPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE 171 (249)
T ss_pred CcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 011123344555421 111334589999999999999999999996
No 285
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.12 E-value=6.1e-11 Score=106.92 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~---------- 190 (237)
..+++++..+..|+.++|+|++|+|||||++.|.|..++.+|..-. . -...++|+.
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 5799999999999999999999999999999999999888875321 0 011222221
Q ss_pred -------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++..++.+ .....++|++|+..|+|++..++.+++|||
T Consensus 416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE 484 (529)
T TIGR02857 416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01233344555544421 112344699999999999999999999997
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.12 E-value=1.5e-10 Score=103.67 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-CCCcceEE---E------------EEEeccc--------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-GGHNFDIV---I------------WVVVSKE-------- 189 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-~~~~f~~~---~------------~v~v~~~-------- 189 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++ .+|.+.+. + ...+.++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4589999999999999999999999999999999999853 56643210 0 0011111
Q ss_pred ---------------c------C---HHHHHHHHHHHCCCCCC-C----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 ---------------L------K---LERIQEDIGKKIRLPTD-S----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ---------------~------~---~~~~~~~il~~~~~~~~-~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ . ....+.++++.+++... . ...++|++++..|+++|..+|.+||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE 429 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 0 0 01234667888888531 1 1344699999999999999999999996
No 287
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=7.8e-11 Score=96.27 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=71.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC-----CCcceE-----E-----------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG-----GHNFDI-----V-----------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~-----~~~f~~-----~-----------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||++.|+|..++. .|.+.+ . .-..+.++
T Consensus 14 ~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~ 93 (251)
T PRK14249 14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93 (251)
T ss_pred ECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecC
Confidence 34445788999999999999999999999999999999998554 353211 0 01112221
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCC--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLP--------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ......+++.+++. ......++|++++..|+++|..+|.+|+||+
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 173 (251)
T PRK14249 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE 173 (251)
T ss_pred CccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 00 01122334445542 1112334589999999999999999999996
No 288
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-10 Score=101.86 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecc---------c
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSK---------E 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~---------~ 189 (237)
..+.+++..+..|+.++|||++|+|||||++.|.|..++..|++.+ ..|+.-.. +
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 6899999999999999999999999999999999999878887643 44552111 1
Q ss_pred c------CHHHHHHHHHHHCCCCCC--------------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L------KLERIQEDIGKKIRLPTD--------------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~------~~~~~~~~il~~~~~~~~--------------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ...+.+.+.+++.++.+- ....++|+.+|..|+|+|..++.+++||+
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 0 123444555665554210 01123489999999999999999999996
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=4.1e-11 Score=97.02 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE--------------EEEEecccc-----CH---
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV--------------IWVVVSKEL-----KL--- 192 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~--------------~~v~v~~~~-----~~--- 192 (237)
..+++++..+..|++++|+|+||+|||||+++|+|..++.+|.+.+. ....+.++. +.
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 94 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence 46888889999999999999999999999999999987888853220 011122111 00
Q ss_pred ---------HHHHHHHHHHCCC-----------CC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ---------ERIQEDIGKKIRL-----------PT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ---------~~~~~~il~~~~~-----------~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+...++ .. .....++|++++..|+++|..+|.+|+||+
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDE 163 (236)
T cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDE 163 (236)
T ss_pred HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0111111222221 10 112344589999999999999999999996
No 290
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=5.9e-11 Score=96.92 Aligned_cols=107 Identities=24% Similarity=0.223 Sum_probs=71.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE-----E-----------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI-----V-----------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~-----~-----------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|...+ . ....+.++
T Consensus 13 ~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14262 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQK 92 (250)
T ss_pred eCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecC
Confidence 3444578899999999999999999999999999999998642 4553211 0 00112221
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ......+++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE 172 (250)
T PRK14262 93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 1 00 011233455556531 112334589999999999999999999996
No 291
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.11 E-value=1.3e-10 Score=96.42 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEEecccc-----CH-----------HH
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVVVSKEL-----KL-----------ER 194 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~v~~~~-----~~-----------~~ 194 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++..|...+ ..++ .+.. +. ..
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv--~q~~~l~~~tv~enl~~~~~~~~~ 127 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFS--SQFSWIMPGTIKENIIFGVSYDEY 127 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEE--eCcccccccCHHHHhhcccccCHH
Confidence 45889999999999999999999999999999999998788886432 1121 1110 00 01
Q ss_pred HHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 195 IQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 195 ~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....++..+++.. .....++|++++..|+++|..++.+++||+
T Consensus 128 ~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 128 RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 1123333333310 001344599999999999999999999996
No 292
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=7.6e-11 Score=96.34 Aligned_cols=106 Identities=22% Similarity=0.196 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE---E-------------EEEEecccc
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI---V-------------IWVVVSKEL 190 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~---~-------------~~v~v~~~~ 190 (237)
+....+++++..+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ . ....+.++.
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 333578889999999999999999999999999999998643 4563211 0 001111111
Q ss_pred -----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ......+++.+++.. .....++|++++..|++++..++.+|+||+
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 173 (251)
T PRK14270 95 NPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE 173 (251)
T ss_pred CcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 012234566776521 112334589999999999999999999996
No 293
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.11 E-value=8.4e-11 Score=96.12 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc--c---CCCcceE---------------EEEE-Eeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC--Y---GGHNFDI---------------VIWV-VVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~--~---~~~~f~~---------------~~~v-~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|... + ..|.+.+ ...+ .+.++
T Consensus 15 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 94 (252)
T PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94 (252)
T ss_pred ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecC
Confidence 344457889999999999999999999999999999998732 3 2553211 0001 12221
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ......+++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 174 (252)
T PRK14239 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE 174 (252)
T ss_pred CccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 00 111223455665421 112344699999999999999999999996
No 294
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.5e-10 Score=106.13 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc-------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ . ....+.++.
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 4689999999999999999999999999999999998777775422 0 001222221
Q ss_pred -CH-------------------HHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -KL-------------------ERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~~-------------------~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+|+... ....++|++++..|+++|..++.|||||+
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDE 489 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE 489 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 1233567888888421 12345699999999999999999999996
No 295
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.11 E-value=1.8e-10 Score=105.05 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEeccc----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKE---------- 189 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~---------- 189 (237)
...+++++..+..|+.++|+|++|+|||||+++|+|..++.+|..-+ .....++|+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 435 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIAN 435 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHH
Confidence 34799999999999999999999999999999999999888885321 001122222
Q ss_pred ---------cCHHHHHHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 ---------LKLERIQEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ---------~~~~~~~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ .+.+.+.++..++. ......++|++|+..|+|+|..++.+||||+
T Consensus 436 Ni~~~~~~~~~-~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE 506 (582)
T PRK11176 436 NIAYARTEQYS-REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_pred HHhcCCCCCCC-HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 11 22334444444321 0112245699999999999999999999997
No 296
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=6.9e-11 Score=96.61 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred ECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3444578999999999999999999999999999999998743
No 297
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.11 E-value=7.8e-11 Score=105.53 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E------------EEEeccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I------------WVVVSKE---------- 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~------------~v~v~~~---------- 189 (237)
..++++++.+..|++++|+|+||+|||||++.|+|..++..|.+.+. + ...+.++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 47899999999999999999999999999999999986666643210 0 0011110
Q ss_pred -----c---------------C---HHHHHHHHHHHCCCC-CCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 -----L---------------K---LERIQEDIGKKIRLP-TDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 -----~---------------~---~~~~~~~il~~~~~~-~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. . .......+++.+++. ... ...++|++++..|+++|..++.|||||+
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDE 422 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE 422 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 0 0 012345678888883 211 2345699999999999999999999996
No 298
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.11 E-value=3.8e-11 Score=99.23 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~---------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|++..+ ..|.+.+ . .-..+.++.
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 47899999999999999999999999999999999984 6675322 0 001122211
Q ss_pred -C-----HHHHHHHHHHHCCCCCCC---------------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K-----LERIQEDIGKKIRLPTDS---------------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~-----~~~~~~~il~~~~~~~~~---------------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+...++.+|+.... ...++|++++..|++++..++.+|+||+
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDE 164 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 164 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0 122334556667664210 1144589999999999999999999996
No 299
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=7.7e-11 Score=96.77 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE---EE-------------EEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI---VI-------------WVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~---~~-------------~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ .+|.+.+ .+ -..+.++
T Consensus 17 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (259)
T PRK14260 17 YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQR 96 (259)
T ss_pred ECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecc
Confidence 3444578899999999999999999999999999999998742 2553211 00 0111121
Q ss_pred c-----C-------------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K-------------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~-------------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + ......++++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 97 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 176 (259)
T PRK14260 97 PNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176 (259)
T ss_pred cccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 0 0112344566666521 111334589999999999999999999996
No 300
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=9.9e-11 Score=96.25 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC-----CCcc-----eE----------E-EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG-----GHNF-----DI----------V-IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~-----~~~f-----~~----------~-~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++. .|.+ +. . ....+.++
T Consensus 17 ~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 96 (261)
T PRK14258 17 YDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96 (261)
T ss_pred eCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecC
Confidence 34445788999999999999999999999999999999998542 3421 10 0 00111221
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCCC-------C-CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLPT-------D-SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~~-------~-~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. ......+++.+++.. . ....++|++++..|+++|..++.+|+||+
T Consensus 97 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDE 176 (261)
T PRK14258 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176 (261)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 00 112334556666521 1 12344589999999999999999999996
No 301
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=7.2e-11 Score=96.51 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE-----------------EEEEEeccc
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI-----------------VIWVVVSKE 189 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~-----------------~~~v~v~~~ 189 (237)
+....++++++.+..|++++|+|+||+|||||+++|+|... +..|...+ .+ ..+.++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i-~~v~q~ 94 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKV-GMVFQK 94 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhE-EEEecC
Confidence 33457888999999999999999999999999999999863 23563211 00 011121
Q ss_pred c-----C--------------------HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 190 L-----K--------------------LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 190 ~-----~--------------------~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
. + ......++++.+++.. .....++|++++..|+++|..++.+|+||
T Consensus 95 ~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 95 PNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred cccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 0 0112235677778742 11233458999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 175 E 175 (251)
T PRK14244 175 E 175 (251)
T ss_pred C
Confidence 6
No 302
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=2e-10 Score=102.97 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-cCCCcceEE---E------------EEEeccc--------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-YGGHNFDIV---I------------WVVVSKE-------- 189 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-~~~~~f~~~---~------------~v~v~~~-------- 189 (237)
...++++++.+..|++++|+|+||+|||||++.|+|..+ +.+|.+.+. + ...+.+.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 357899999999999999999999999999999999975 356643210 0 0111111
Q ss_pred -------c--------------C---HHHHHHHHHHHCCCCC-CC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 -------L--------------K---LERIQEDIGKKIRLPT-DS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 -------~--------------~---~~~~~~~il~~~~~~~-~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + ....+.++++.+++.. .. ...++|++++..|+++|..+|.+||||+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDE 431 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE 431 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 0 0 0123456788888842 21 2345699999999999999999999996
No 303
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.8e-10 Score=102.93 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E------------EEEeccc---------c
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I------------WVVVSKE---------L 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~------------~v~v~~~---------~ 190 (237)
..++++++.+..|++++|+|+||+|||||++.|+|..++.+|.+.+. + ...+.+. .
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 47899999999999999999999999999999999987777754320 0 0011110 0
Q ss_pred ---------------------C---HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------------K---LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------------~---~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .......+++.+++... ....++|++++..|++++..+|.+|+||+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE 417 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE 417 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 01223556677777421 12345699999999999999999999996
No 304
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.10 E-value=2.1e-10 Score=103.47 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EE-EEEecccc-------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VI-WVVVSKEL------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~-~v~v~~~~------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|.. +.+|.+.+ .. ...+.++.
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 4789999999999999999999999999999999988 46664321 00 01222211
Q ss_pred -C--------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K--------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~--------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+++... ....++|++++..|+++|..++.+||||+
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 451 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeC
Confidence 0 01233567788888521 12345699999999999999999999996
No 305
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.10 E-value=6.6e-11 Score=97.82 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-----cCCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-----YGGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-----~~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ +..|.+.+ . ....+.++
T Consensus 34 ~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 113 (271)
T PRK14238 34 YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQK 113 (271)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecC
Confidence 444567899999999999999999999999999999999874 35664311 0 01122222
Q ss_pred cC-----H-------------------HHHHHHHHHHCCCC--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 LK-----L-------------------ERIQEDIGKKIRLP--------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~~-----~-------------------~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. . ...+.++++.+++. ......++|++++..|+++|..++.+|+||+
T Consensus 114 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDE 193 (271)
T PRK14238 114 PNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDE 193 (271)
T ss_pred CccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 10 0 01112333334321 1112334589999999999999999999996
No 306
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=6.6e-11 Score=96.64 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=71.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhc---ccc--CCCcceE-----EE-----------EEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNN---FCY--GGHNFDI-----VI-----------WVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~---~~~--~~~~f~~-----~~-----------~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|. .++ ..|.+.+ .. ...+.+.
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 92 (250)
T PRK14245 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQR 92 (250)
T ss_pred ECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecC
Confidence 3444578888999999999999999999999999999885 222 2454311 00 0111111
Q ss_pred c-----C-------------------HHHHHHHHHHHCCCCCC--------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----K-------------------LERIQEDIGKKIRLPTD--------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~-------------------~~~~~~~il~~~~~~~~--------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + ......++++.+++... ....++|++++..|+++|..++.+|+||+
T Consensus 93 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14245 93 PNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 0 01123456677776321 11344599999999999999999999996
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.09 E-value=1.5e-10 Score=103.41 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-CCCcceE-----------------EEEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-GGHNFDI-----------------VIWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-~~~~f~~-----------------~~~v~v~~~~-- 190 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ ..|.+.+ ..+ +.++.
T Consensus 270 ~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~--v~q~~~~ 347 (490)
T PRK10938 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY--VSSSLHL 347 (490)
T ss_pred ECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE--ECHHHHh
Confidence 4555678999999999999999999999999999999997643 2442211 011 11100
Q ss_pred --------------------------C--HHHHHHHHHHHCCCCC-CC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------------------K--LERIQEDIGKKIRLPT-DS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------------------~--~~~~~~~il~~~~~~~-~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++.. .. ...++|++++..|+++|..++.+|+||+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 427 (490)
T PRK10938 348 DYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE 427 (490)
T ss_pred hcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 0123467788888864 21 1334599999999999999999999996
No 308
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=8.1e-11 Score=89.33 Aligned_cols=94 Identities=26% Similarity=0.290 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCcCCCC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSWKNRS 214 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~~~~ 214 (237)
..+++++..+.+|++++|+|+||+|||||++.|++..++..|.+.+..- .+.. .... .....++... ..++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~-~~~~-~~~~----~~~~~i~~~~---qlS~ 83 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK-DIAK-LPLE----ELRRRIGYVP---QLSG 83 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE-Eccc-CCHH----HHHhceEEEe---eCCH
Confidence 4677778888899999999999999999999999998766665422110 1111 0111 1112222211 1557
Q ss_pred HHHHHHHHHHHhhcCCcEEEecC
Q 044827 215 IENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 215 ~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
|++++..|++++..++.+++||+
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeC
Confidence 89999999999999999999996
No 309
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.09 E-value=7.5e-11 Score=109.60 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEeccc-----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKE----------- 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~----------- 189 (237)
..+++++..+..|+.++|+|++|+|||||++.+.|..++.+|..-+ . .-..+.|+
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 4799999999999999999999999999999999999888885422 0 01123332
Q ss_pred -------cCHHHHHHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 -------LKLERIQEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 -------~~~~~~~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ .+.+.+.++..++. ......++|++|+..|++++..++.++|||+
T Consensus 559 i~~~~~~~~-~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE 627 (694)
T TIGR03375 559 IALGAPYAD-DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627 (694)
T ss_pred HhCCCCCCC-HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 12 22223344444331 1112344589999999999999999999997
No 310
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.09 E-value=1.8e-10 Score=106.21 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEEEecccc--------------------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWVVVSKEL-------------------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v~v~~~~-------------------- 190 (237)
...+++++..+..|++++|+|+||+|||||+++|+|..++..|..... .-..+.++.
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhh
Confidence 358999999999999999999999999999999999987777754220 011122210
Q ss_pred ----CHHHHHHHHHHHCCCCCC-------------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----KLERIQEDIGKKIRLPTD-------------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~~~~~~~~il~~~~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.++++.+++... ....++|++++..|++++..+|.++|||+
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE 608 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 012334567777777421 02345699999999999999999999997
No 311
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.09 E-value=7e-11 Score=107.83 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc-------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~------- 190 (237)
...+++++..+..|+.++|+|++|+|||||++.+.|..++.+|..-+ ..+ ++|+.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~--v~Q~~~lf~~Ti 425 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV--VFQDAGLFNRSI 425 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE--EecCcccccccH
Confidence 45799999999999999999999999999999999999888885311 122 22221
Q ss_pred ---------C-HHHHHHHHHHHCCC-----------CC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------K-LERIQEDIGKKIRL-----------PT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~-~~~~~~~il~~~~~-----------~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..+.+...++..++ +. .....++|++|+..|+|+|..++.++|||+
T Consensus 426 ~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE 497 (588)
T PRK13657 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE 497 (588)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 11223333443332 11 111244589999999999999999999997
No 312
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.08 E-value=9.2e-11 Score=97.00 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE----------------EEEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI----------------VIWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~----------------~~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..++ .+|.+.+ .....+.++
T Consensus 35 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~ 114 (272)
T PRK14236 35 YGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQR 114 (272)
T ss_pred ECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecC
Confidence 4555678999999999999999999999999999999998742 4664211 001122221
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. .....++++.+++.. .....++|++++..|+++|..++.+||||+
T Consensus 115 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 194 (272)
T PRK14236 115 PNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194 (272)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 1 00 112334555666531 112334589999999999999999999996
No 313
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.08 E-value=1e-10 Score=108.98 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEeccc----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKE---------- 189 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~---------- 189 (237)
...+++++..+..|+.++|+|++|+|||||++.+.|...+.+|..-+ . ....++|+
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 566 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILE 566 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHH
Confidence 46799999999999999999999999999999999999888885422 0 01122222
Q ss_pred ---------cCHHHHHHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 ---------LKLERIQEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ---------~~~~~~~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+. +.+.+.++..++. ......++|++|+..|+|++..+|.+|+||+
T Consensus 567 Ni~l~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE 637 (708)
T TIGR01193 567 NLLLGAKENVSQ-DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637 (708)
T ss_pred HHhccCCCCCCH-HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 122 2234444444331 1112234699999999999999999999997
No 314
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.08 E-value=9.4e-11 Score=107.08 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~--------- 190 (237)
...+++++..+..|+.++|+|++|+|||||++.++|..+|.+|...+ . ....++|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLA 433 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHH
Confidence 35799999999999999999999999999999999999888885321 0 011223321
Q ss_pred -------CHHHHHHHHHHHCCCC-----------C----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------KLERIQEDIGKKIRLP-----------T----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~~~~~~~~il~~~~~~-----------~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....+.+.++..|+. . .....++|+.|+..|+|+|..++.+|+||+
T Consensus 434 NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE 502 (592)
T PRK10790 434 NVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502 (592)
T ss_pred HHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0122334455555432 1 111234589999999999999999999996
No 315
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.07 E-value=1.6e-10 Score=104.76 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE------------EEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI------------WVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~------------~v~v~~~~---------- 190 (237)
..+++++..+..|++++|+|++|+|||||++.+.+..++.+|...+ .. ...+.++.
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 3789999999999999999999999999999999998888885321 00 01222221
Q ss_pred ----CHHHHHHHHHHHCCCCCCC----------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----KLERIQEDIGKKIRLPTDS----------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~~~~~~~~il~~~~~~~~~----------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++.+++.... ...++|++++..|++++..++.++|||+
T Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 436 EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0123345677887764311 1244689999999999999999999997
No 316
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.07 E-value=1.2e-10 Score=105.79 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEeccc----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKE---------- 189 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~---------- 189 (237)
...+++++..+..|+.++|+|+||+|||||++.+.|..++.+|...+ . ....+.++
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 407 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHH
Confidence 35799999999999999999999999999999999999888885321 0 00111221
Q ss_pred --------cCHHHHHHHHHHHCCCC-------C--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 --------LKLERIQEDIGKKIRLP-------T--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 --------~~~~~~~~~il~~~~~~-------~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+. +.+...++..++. . .....++|++++..|++++..+|.+++||+
T Consensus 408 Ni~~~~~~~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE 477 (569)
T PRK10789 408 NIALGRPDATQ-QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477 (569)
T ss_pred HHhcCCCCCCH-HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 111 2223334443331 0 111244589999999999999999999997
No 317
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.3e-10 Score=94.98 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc--c---CCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC--Y---GGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~--~---~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|... + ..|.+.+ . ....+.++
T Consensus 13 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14266 13 FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQK 92 (250)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecC
Confidence 343457888999999999999999999999999999998742 1 4553211 0 00111111
Q ss_pred c---------------------C---HHHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L---------------------K---LERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~---------------------~---~~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. + ....+.++++.+++.. .....++|++++..|+++|..++.+|+||+
T Consensus 93 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 172 (250)
T PRK14266 93 PNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE 172 (250)
T ss_pred CccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 0 0 0112334556666521 112334589999999999999999999996
No 318
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=3.2e-10 Score=93.41 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=71.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE-----------------E-EEEEec
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI-----------------V-IWVVVS 187 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~-----------------~-~~v~v~ 187 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|...+ .+|.+.+ . ....+.
T Consensus 26 ~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 105 (265)
T PRK14252 26 YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105 (265)
T ss_pred ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEc
Confidence 4444689999999999999999999999999999999998643 3453211 0 001222
Q ss_pred ccc-----CH-------------------HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 188 KEL-----KL-------------------ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 188 ~~~-----~~-------------------~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
+.. +. ......+++.+++.. .....++|++++..|+++|..++.+|+|
T Consensus 106 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 185 (265)
T PRK14252 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLF 185 (265)
T ss_pred cCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 221 00 112234445555421 1123345899999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 186 DE 187 (265)
T PRK14252 186 DE 187 (265)
T ss_pred eC
Confidence 96
No 319
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.07 E-value=3.7e-10 Score=99.53 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC----CCcceE------------------EEEEEecccc--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG----GHNFDI------------------VIWVVVSKEL-- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~----~~~f~~------------------~~~v~v~~~~-- 190 (237)
..++++++.+..|++++|+|.+|+||||+++.|.|..+.. .|..-+ .....+.|+.
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 5789999999999999999999999999999999998544 343211 0011222211
Q ss_pred --C-----------------------HHHHHHHHHHHCCCCCCC------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K-----------------------LERIQEDIGKKIRLPTDS------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~-----------------------~~~~~~~il~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++..|+++.. +..++|++|+..|+.+|..+|.|||+|+
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE 180 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC
Confidence 1 233455688888986533 2345799999999999999999999996
No 320
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.8e-10 Score=88.07 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceE-------------------EEEE--------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDI-------------------VIWV-------- 184 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~-------------------~~~v-------- 184 (237)
..+++.++..+..|++.+|.||||+|||||+..|.|+. ..++|..-+ .+|-
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 58999999999999999999999999999999999986 234443211 2221
Q ss_pred Eecc---------------ccCHHHHHHHHHHHCCCCCCC------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 VVSK---------------ELKLERIQEDIGKKIRLPTDS------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 ~v~~---------------~~~~~~~~~~il~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++.. .......+++.++.++++..- ..-++|++++..|.+.+.-+|.+.|||+
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE 170 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDE 170 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecC
Confidence 1110 012245566778888886421 1224589999999999999999999996
No 321
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4.2e-10 Score=92.09 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=70.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE----------------EEEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI----------------VIWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~----------------~~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|...+ ..|...+ .....+.+.
T Consensus 16 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 95 (253)
T PRK14261 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQR 95 (253)
T ss_pred ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecC
Confidence 4444678999999999999999999999999999999987531 2453211 000111221
Q ss_pred c---------------------CH---HHHHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L---------------------KL---ERIQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~---------------------~~---~~~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. .....++++.+++.. .....++|++++..|++++..+|.+++||+
T Consensus 96 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (253)
T PRK14261 96 PNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE 175 (253)
T ss_pred CccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 00 112334555665521 112344589999999999999999999996
No 322
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.05 E-value=1.9e-10 Score=104.58 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EE-EEEeccc-----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VI-WVVVSKE----------- 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~-~v~v~~~----------- 189 (237)
..+++++..+..|+.++|+|++|+|||||++.+.|..++.+|..-. .- ...++|+
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence 4789999999999999999999999999999999999888785321 00 1122221
Q ss_pred --------cCHHHHHHHHHHHCCCC-----------C----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 --------LKLERIQEDIGKKIRLP-----------T----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 --------~~~~~~~~~il~~~~~~-----------~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ ...+.+.++..++. . ....-++|++|+..|+|++..++.+++||+
T Consensus 426 i~~~~~~~~~-~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDE 495 (571)
T TIGR02203 426 IAYGRTEQAD-RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDE 495 (571)
T ss_pred HhcCCCCCCC-HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 12 22334445544431 1 111234699999999999999999999996
No 323
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.04 E-value=2e-10 Score=104.59 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~---------- 190 (237)
..+++++..+..|+.++|+|++|+|||||++.++|..++.+|...+ . ....++|+.
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 4799999999999999999999999999999999999888885321 0 011122211
Q ss_pred -------CHHHHHHHHHHHCCCC-----------C----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------KLERIQEDIGKKIRLP-----------T----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~~~~~~~~il~~~~~~-----------~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.+.+.++..++. . .....++|++++..|++++..++.+++|||
T Consensus 434 i~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDE 502 (576)
T TIGR02204 434 IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE 502 (576)
T ss_pred HhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 0122333444444331 1 111234589999999999999999999997
No 324
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.04 E-value=7e-10 Score=108.25 Aligned_cols=98 Identities=21% Similarity=0.384 Sum_probs=64.9
Q ss_pred CcccchHHHHHHHHHHhhc----CCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEE-----eccc---------
Q 044827 128 RTIVGQQATFQKVLNCLAE----NAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVV-----VSKE--------- 189 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~----~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~-----v~~~--------- 189 (237)
..++|++..++++...+.. .++++|+||||+||||||+.+|+.. ...|+..+|+. ....
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 4589999999998877753 3899999999999999999999965 45677666652 1110
Q ss_pred cC-HHHHHHHHHHH----CCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 LK-LERIQEDIGKK----IRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~~-~~~~~~~il~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ...+..+++.. .++. ... ...+.+.|.++++||||||
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~-----~~~----~~~~~~~L~~krvLLVLDd 304 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIK-----IYH----LGAMEERLKHRKVLIFIDD 304 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcc-----cCC----HHHHHHHHhCCeEEEEEeC
Confidence 01 11222333333 3221 111 1246667889999999998
No 325
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.04 E-value=4.5e-10 Score=92.16 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~---------- 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+.+..
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN 114 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHh
Confidence 4788889999999999999999999999999999998777775321 0001112110
Q ss_pred -CH-----HHHHHHHHHHCCC-----------CCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -KL-----ERIQEDIGKKIRL-----------PTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~~-----~~~~~~il~~~~~-----------~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. ......++...++ ... ....++|++++..|+++|..++.+|+||+
T Consensus 115 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 182 (257)
T cd03288 115 LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE 182 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 1111222222222 110 11334589999999999999999999996
No 326
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.03 E-value=2e-11 Score=93.45 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=82.0
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------------------
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------------------- 180 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------------------- 180 (237)
..||.-..++++++.+..|+.-.|+||||+||||++-.|.|..++..|..-+
T Consensus 13 VsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 13 VSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred EEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 3467778999999999999999999999999999999999999777674211
Q ss_pred ------------------EEEEEeccc--cCHHHHHHHHHHHCCCCCCCcC----CCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 181 ------------------VIWVVVSKE--LKLERIQEDIGKKIRLPTDSWK----NRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 181 ------------------~~~v~v~~~--~~~~~~~~~il~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
..|.+.... ......+.+++..+|+.+.... .+-|++|...|...+...|.||+||
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlD 172 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLD 172 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEec
Confidence 111111111 1234466788888888654332 2348999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 173 E 173 (249)
T COG4674 173 E 173 (249)
T ss_pred C
Confidence 6
No 327
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.03 E-value=3.1e-10 Score=102.73 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEeccc----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKE---------- 189 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~---------- 189 (237)
...+++++..+..|+.++|+|++|+|||||++.++|..++.+|...+ . ....+.++
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 410 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHH
Confidence 35799999999999999999999999999999999999888885321 0 01112221
Q ss_pred --------cCHHHH--------HHHHHHHC--CCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 --------LKLERI--------QEDIGKKI--RLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 --------~~~~~~--------~~~il~~~--~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+..++ +.+.++.+ |++. .....++|++++..|++++..+|.+|||||
T Consensus 411 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDE 480 (544)
T TIGR01842 411 NIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480 (544)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111221 12233334 2221 112345699999999999999999999997
No 328
>PLN03211 ABC transporter G-25; Provisional
Probab=99.03 E-value=1.4e-10 Score=106.64 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=76.8
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC--CCcceE--E--------EEEEecccc-------
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG--GHNFDI--V--------IWVVVSKEL------- 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~--~~~f~~--~--------~~v~v~~~~------- 190 (237)
.++....+++++..+..|++++|+|+||+|||||+++|+|..++. .|...+ . .-..+.++.
T Consensus 77 ~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCC
Confidence 356667899999999999999999999999999999999987442 453211 0 001111110
Q ss_pred -----------------CH---HHHHHHHHHHCCCCCCC---------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------------KL---ERIQEDIGKKIRLPTDS---------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------------~~---~~~~~~il~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+|+.... ...++|++++..|+++|..+|.+|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 01 12345678888885321 1245699999999999999999999996
No 329
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=3.1e-10 Score=96.18 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCcceE-----------------EEEEEecccc--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHNFDI-----------------VIWVVVSKEL-- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~f~~-----------------~~~v~v~~~~-- 190 (237)
..++++++.+..|++++|+|++|+|||||+++|++.... ..|.+.+ .+. .+.+..
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~-~v~q~~~~ 174 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIG-MVFQKPTP 174 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEE-EEecCCcc
Confidence 479999999999999999999999999999999998742 3564211 011 111110
Q ss_pred ---------C--H-------HH----HHHHHHHHCCCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------K--L-------ER----IQEDIGKKIRLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~--~-------~~----~~~~il~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. . .. ....+++.+++.. .....++|++++..|++++..++.+|+|||
T Consensus 175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDE 251 (329)
T PRK14257 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDE 251 (329)
T ss_pred CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 0 11 1344566666521 112334589999999999999999999997
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.01 E-value=4e-10 Score=104.36 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|.
T Consensus 186 ~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 186 SVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46666789999999999999999999999999999999985
No 331
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.01 E-value=2.9e-10 Score=105.74 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE------------EEEeccc----------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI------------WVVVSKE---------- 189 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~------------~v~v~~~---------- 189 (237)
...+++++..+..|+.++|+|++|+|||||++++.|..++.+|..-+ .. -..+.++
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHH
Confidence 34799999999999999999999999999999999999888885311 00 0112221
Q ss_pred --------cCHHHHHHHHHHHCCC-----------CC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 --------LKLERIQEDIGKKIRL-----------PT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 --------~~~~~~~~~il~~~~~-----------~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ .+.+.+.++..++ +. .....++|++++..|++++..++.+|+||+
T Consensus 550 Ni~~~~~~~~-~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDE 619 (694)
T TIGR01846 550 NIALCNPGAP-FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE 619 (694)
T ss_pred HHhcCCCCCC-HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 11 1222333333332 11 112334589999999999999999999996
No 332
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.2e-10 Score=94.34 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc-----CCCc--ceEE-------------EE---EEecccc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY-----GGHN--FDIV-------------IW---VVVSKEL 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~-----~~~~--f~~~-------------~~---v~v~~~~ 190 (237)
-..++++++.+..|++++|||.+|+||||+++.|.+..+. ..|. |+.. -| -.+.|+.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 4678999999999999999999999999999999998842 2232 2210 01 1222221
Q ss_pred ----C------------------------HHHHHHHHHHHCCCCCC-------CcCCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 191 ----K------------------------LERIQEDIGKKIRLPTD-------SWKNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 191 ----~------------------------~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
+ ..+.+.++++.+|++.. .+..++|+.||..||.+|..+|.|||.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 0 01245678888898743 245567999999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 178 DE 179 (316)
T COG0444 178 DE 179 (316)
T ss_pred CC
Confidence 96
No 333
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.01 E-value=3e-10 Score=103.27 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=72.9
Q ss_pred cc-hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEE-Eecccc-----
Q 044827 131 VG-QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWV-VVSKEL----- 190 (237)
Q Consensus 131 ~g-~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v-~v~~~~----- 190 (237)
|+ ....++++++.+..|+.++|||++|+|||||++.+.+...+.+|..-. +..+ .|+|+.
T Consensus 338 y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~ 417 (567)
T COG1132 338 YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417 (567)
T ss_pred cCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecc
Confidence 44 357899999999999999999999999999999999999777775432 0000 122221
Q ss_pred -----------C-HHHHHHHHHH---------HC--CCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------K-LERIQEDIGK---------KI--RLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------~-~~~~~~~il~---------~~--~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..+.+.+.++ .+ |++. ....-++|++|+..|||++..++.+|||||
T Consensus 418 TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE 491 (567)
T COG1132 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491 (567)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 0 1122233333 22 2211 111234589999999999999999999997
No 334
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=1.1e-09 Score=89.49 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc--c---CCCcceE---E-------------EEEEeccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC--Y---GGHNFDI---V-------------IWVVVSKE 189 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~--~---~~~~f~~---~-------------~~v~v~~~ 189 (237)
|+....++++++.+..|++++|+|+||+|||||+++|+|..+ + ..|...+ . .-..+.++
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 94 (252)
T PRK14255 15 YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQ 94 (252)
T ss_pred ECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECC
Confidence 444457888999999999999999999999999999999642 2 2443110 0 00112221
Q ss_pred c-----CH-------------------HHHHHHHHHHCCCC--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-----KL-------------------ERIQEDIGKKIRLP--------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-----~~-------------------~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. +. .......++.+++. ......++|++++..|+++|..++.+|+||+
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 174 (252)
T PRK14255 95 PNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE 174 (252)
T ss_pred CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 00 01122334445442 1112334599999999999999999999996
No 335
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.00 E-value=3.7e-10 Score=102.98 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~--------- 190 (237)
...+++++..+..|+.++|+|++|+|||||++.+.|..++.+|..-+ . ....+.++.
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 427 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHH
Confidence 34799999999999999999999999999999999999888885321 0 001122221
Q ss_pred ---------CHHHHHHHHHHHC-----------CCCC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLERIQEDIGKKI-----------RLPT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~~~~~il~~~-----------~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+..+ +...++.. |+.. .....++|++++..|+++|..+|.+||||+
T Consensus 428 Ni~~~~~~~~~~~-~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE 497 (585)
T TIGR01192 428 NIRLGREGATDEE-VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE 497 (585)
T ss_pred HHhcCCCCCCHHH-HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 1111 22222222 1111 112234599999999999999999999997
No 336
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.99 E-value=1.3e-09 Score=88.64 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=60.7
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc--cCHHHHHHHHHHHCCCCCCCcCCCCHHH----
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE--LKLERIQEDIGKKIRLPTDSWKNRSIEN---- 217 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~--~~~~~~~~~il~~~~~~~~~~~~~~~~~---- 217 (237)
+..|+.++|+|++|+|||||++.+++.. ... +|+...|+++..+ ++..++++.+...+-... ...+...+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~--~~~~~~~~~~~~ 88 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAI-TKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST--FDEPPERHVQVA 88 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcc-ccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEec--CCCCHHHHHHHH
Confidence 4567999999999999999999999987 333 8999999998776 788888888722221111 01112211
Q ss_pred -HHHHHHHHh--hcCCcEEEecC
Q 044827 218 -EARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 218 -~~~~l~~~l--~~~~~LlvLDd 237 (237)
.....++.+ .+++.+|++|+
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDe 111 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDS 111 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC
Confidence 122233322 36889999996
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=98.97 E-value=1.4e-09 Score=108.75 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCC-CcceEEEEE-Eeccc-----------------cCHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGG-HNFDIVIWV-VVSKE-----------------LKLERI 195 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~-~~f~~~~~v-~v~~~-----------------~~~~~~ 195 (237)
..+++++..+..|+.++|+|++|+|||||++.|.|..++.+ |.....-.+ .++|+ ++ .+.
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d-~e~ 709 (1622)
T PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFD-PER 709 (1622)
T ss_pred ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCccc-HHH
Confidence 46899999999999999999999999999999999998888 665432111 22222 22 223
Q ss_pred HHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+.++..++. ......++|+++|..|||++..++.+++|||
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 34444443321 1112344699999999999999999999998
No 338
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.5e-09 Score=94.67 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=77.6
Q ss_pred ccchHH-HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc----
Q 044827 130 IVGQQA-TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL---- 190 (237)
Q Consensus 130 ~~g~~~-~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~---- 190 (237)
-||.+. .++.+++.+..|+.+||+|.||+||||+++.++... ..+|..-. ..--+|.|+.
T Consensus 360 ~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~-d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn 438 (591)
T KOG0057|consen 360 SYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-DYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN 438 (591)
T ss_pred EeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh-ccCCcEEECCeeHhhhChHHhhhheeEeCCcccccc
Confidence 467666 999999999999999999999999999999999988 46775421 1112344431
Q ss_pred -------------CHHHHHHHHHHHCCCCCC---------------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------------KLERIQEDIGKKIRLPTD---------------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------------~~~~~~~~il~~~~~~~~---------------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
--.+...++++.+++.+. ....++||+|+..|++++...+.++++|+
T Consensus 439 dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 439 DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 012334556666665321 12344699999999999999999999996
No 339
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.95 E-value=1.4e-09 Score=81.06 Aligned_cols=110 Identities=21% Similarity=0.290 Sum_probs=81.2
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC-------cceE--------------------
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH-------NFDI-------------------- 180 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~-------~f~~-------------------- 180 (237)
+.+||....+-+|...-..|+.+.+.||+|+|||||++.+.=..-+.+| +||+
T Consensus 9 n~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 9 NCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred ccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 4679999999999999999999999999999999999998766655555 3443
Q ss_pred ---EEEEEec--ccc-------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 181 ---VIWVVVS--KEL-------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 181 ---~~~v~v~--~~~-------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..|-+.. ++. .......++++++.+.... ...++|++++..|+++|.-+|.+|++|+
T Consensus 89 qqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde 167 (242)
T COG4161 89 QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred hhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC
Confidence 2343211 110 1223345677777765322 2456799999999999999999999996
No 340
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=79.78 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EEEE---------------------------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VIWV--------------------------- 184 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~~v--------------------------- 184 (237)
.-.+.+++..+.+|+++.|.||+|||||||+..+.|.. .+.|++ .+|+
T Consensus 15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~L---a~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFph 91 (213)
T COG4136 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL---AGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPH 91 (213)
T ss_pred ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhc---ccCcceeeEEEECCeeccccchhhhheeeeecccccccc
Confidence 34455677888899999999999999999999999976 556655 2332
Q ss_pred -Eecccc-----------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 -VVSKEL-----------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 -~v~~~~-----------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+|.++. .........++..|+...- ...++|++.+..|.++|...|.+++||+
T Consensus 92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 122211 1233455677777775322 2344688888899999999999999996
No 341
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.6e-09 Score=92.48 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce--E---EEEEE------eccc----------c
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD--I---VIWVV------VSKE----------L 190 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~--~---~~~v~------v~~~----------~ 190 (237)
|....+..+.+-+.-...|+||||||+|||||++++.|...|..|... . +-|.. .... |
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F 677 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKF 677 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhc
Confidence 556778888887877899999999999999999999999988777432 1 22221 0000 1
Q ss_pred C-HHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K-LERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~-~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ +....+.-+..||+.... ...++|+..+..|+..-.+.|.+||||+
T Consensus 678 Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 1 122345566677774322 1345688888999999999999999995
No 342
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.95 E-value=3.9e-10 Score=113.22 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE------------E-EEEecccc------C---
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV------------I-WVVVSKEL------K--- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~------------~-~v~v~~~~------~--- 191 (237)
...+++++..+..|++++|+|+||+|||||+++|+|..++.+|...+. - ...+.+.. +
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E 1022 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAE 1022 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHH
Confidence 457899999999999999999999999999999999988888754210 0 00111110 0
Q ss_pred ---------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 1023 ~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1023 HILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 112345678888885421 2344699999999999999999999996
No 343
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1.7e-09 Score=81.29 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---EEE-------------------Eecccc--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---IWV-------------------VVSKEL-- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~~v-------------------~v~~~~-- 190 (237)
..++++++.+..|+.+.+-|++|+|||||++.+|+++.+..|+.... .|+ +|||-.
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 35778889999999999999999999999999999998888865431 222 111100
Q ss_pred ----------------------CHHHHHHHHHHHCCCCCCCc-----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----------------------KLERIQEDIGKKIRLPTDSW-----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----------------------~~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+.++.+++++...+ .-++|+|++.-|++.+...-.+|+||+
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDE 178 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDE 178 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecC
Confidence 12334567888898875433 234699999999998887777788885
No 344
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.6e-09 Score=93.89 Aligned_cols=106 Identities=26% Similarity=0.247 Sum_probs=75.0
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce----E-EEEEEec---------------c
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD----I-VIWVVVS---------------K 188 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~----~-~~~v~v~---------------~ 188 (237)
..||....+.+-...|..|+..|+||+||+|||||+++|.+- .+++ |. + ...+... +
T Consensus 88 La~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~--~v~~-f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~ 164 (582)
T KOG0062|consen 88 LAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG--QVSG-FHVEQEVRGDDTEALQSVLESDTERLDFLAE 164 (582)
T ss_pred eeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc--CcCc-cCchhheeccchHHHhhhhhccHHHHHHHHh
Confidence 358988899999999999999999999999999999999982 1111 11 1 1111000 0
Q ss_pred c------cCHHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 E------LKLERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 ~------~~~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....++...+|..+|+.... ..-++|-+.+..||++|-.+|.||+||+
T Consensus 165 e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE 224 (582)
T KOG0062|consen 165 EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE 224 (582)
T ss_pred hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC
Confidence 0 01233334478888886431 2345689999999999999999999996
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.94 E-value=3.6e-09 Score=82.44 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----EEE---------EEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----VIW---------VVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~~~---------v~v~~~~--------- 190 (237)
..+++.++..+..++.+.|+|.||+|||||++.|+|+..+++|..-+ .-| ..|.|++
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 46788899999999999999999999999999999999888886432 100 0122211
Q ss_pred -----------------------CHHHHHHHHHHHCCCCCCC------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------------------KLERIQEDIGKKIRLPTDS------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------------------~~~~~~~~il~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+..++-+..+++.-.+ ...++|++|+..|..+..++|.+|+||+
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 1122333444444432111 1234688888899999999999999996
No 346
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.93 E-value=9.8e-10 Score=110.40 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=77.5
Q ss_pred cch--HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---E----------EEEecccc-----
Q 044827 131 VGQ--QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---I----------WVVVSKEL----- 190 (237)
Q Consensus 131 ~g~--~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---~----------~v~v~~~~----- 190 (237)
||. ...+++++..+..|++++|+|+||+|||||+++|+|...+..|...+. + .-.+.+..
T Consensus 1947 Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~ 2026 (2272)
T TIGR01257 1947 YSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDL 2026 (2272)
T ss_pred ECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCC
Confidence 553 358899999999999999999999999999999999988888864220 0 11122210
Q ss_pred -C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .......+++.+++.... ...++|++++..|+++|.++|.+|+||+
T Consensus 2027 LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE 2096 (2272)
T TIGR01257 2027 LTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096 (2272)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 1 012234567788875321 2344689999999999999999999996
No 347
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.93 E-value=3.9e-09 Score=89.27 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~------ 190 (237)
..+++++..+..|+.++|||.+|+|||||.+.+.... +..|...+ .+-+.+.+.|
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-CcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 4578899999999999999999999999999999998 54574322 0111111111
Q ss_pred ---------------------CHHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------------KLERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------------~~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+.+...|++.. .++-++|+.++..|++++.-+|-+++||+
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDE 452 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDE 452 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecC
Confidence 112344567788888643 23445799999999999999999999996
No 348
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.92 E-value=4.2e-09 Score=89.29 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=59.5
Q ss_pred EEcCCCCcHHHHHHHHHhccccCCCcceE--E----------EEEEecccc------C------------------HHHH
Q 044827 152 LYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------IWVVVSKEL------K------------------LERI 195 (237)
Q Consensus 152 IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------~~v~v~~~~------~------------------~~~~ 195 (237)
|+|+||+|||||+++|+|..++.+|.+.+ . ....+.+++ + ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999998777775421 0 001112211 0 0123
Q ss_pred HHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDE 126 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDE 126 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 45677888885321 2334599999999999999999999996
No 349
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.92 E-value=1.2e-09 Score=95.15 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEE---------Eec-------c------
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWV---------VVS-------K------ 188 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v---------~v~-------~------ 188 (237)
+-+...+.+..+.|..|+.++|+|+||+||||+++.|++...|...++++...- ++. +
T Consensus 85 ~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle 164 (614)
T KOG0927|consen 85 FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLE 164 (614)
T ss_pred cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHH
Confidence 444567788888899999999999999999999999999998888877653221 000 0
Q ss_pred -----------cc------------------CHHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEE
Q 044827 189 -----------EL------------------KLERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLL 234 (237)
Q Consensus 189 -----------~~------------------~~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~Llv 234 (237)
+. .....+..++..+|..... ...++|.++|..|+++|.-+|.||+
T Consensus 165 ~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLL 244 (614)
T KOG0927|consen 165 YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL 244 (614)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEE
Confidence 00 0112233455555543211 2345699999999999999999999
Q ss_pred ecC
Q 044827 235 LDD 237 (237)
Q Consensus 235 LDd 237 (237)
|||
T Consensus 245 LDE 247 (614)
T KOG0927|consen 245 LDE 247 (614)
T ss_pred ecC
Confidence 997
No 350
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.90 E-value=3.3e-09 Score=97.78 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL------ 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~------ 190 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|.+.+ .....+++++
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 4688899999999999999999999999999999998777774311 0011222211
Q ss_pred C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...+.|++++..|+++|..+|.+|+||+
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDE 170 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE 170 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 1 012335577788875321 2334589999999999999999999996
No 351
>PLN03232 ABC transporter C family member; Provisional
Probab=98.89 E-value=2e-09 Score=107.21 Aligned_cols=104 Identities=11% Similarity=0.161 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~--------- 190 (237)
...+++++..+..|+.+||||++|+|||||++.+.+..++.+|..-+ . ....++|+.
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 35899999999999999999999999999999999999888885421 0 001222221
Q ss_pred --C-----HHHHHHHHHHHCCCC-----------C----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K-----LERIQEDIGKKIRLP-----------T----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~-----~~~~~~~il~~~~~~-----------~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..+.+.+.++..++. . ....-++|++|+..|+|+|..++.+||||+
T Consensus 1329 NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE 1397 (1495)
T PLN03232 1329 NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE 1397 (1495)
T ss_pred HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 1 112234444444331 1 011234589999999999999999999997
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=98.88 E-value=3.2e-09 Score=105.80 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc-eEEEE-EEeccc-----------------cCHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF-DIVIW-VVVSKE-----------------LKLERI 195 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f-~~~~~-v~v~~~-----------------~~~~~~ 195 (237)
..+++++..+..|+.++|+|++|+|||||++.|.|..++.+|.. ...-. ..++|+ ++. +.
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~-e~ 709 (1495)
T PLN03232 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFES-ER 709 (1495)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCH-HH
Confidence 46899999999999999999999999999999999997777643 21111 122222 222 22
Q ss_pred HHHHHHHCCCC-------C--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIGKKIRLP-------T--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il~~~~~~-------~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..++++..++. . .....++|+++|..|||++..++.+++|||
T Consensus 710 ~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDE 766 (1495)
T PLN03232 710 YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDD 766 (1495)
T ss_pred HHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34444443331 1 111234589999999999999999999998
No 353
>PTZ00243 ABC transporter; Provisional
Probab=98.87 E-value=3.3e-09 Score=105.82 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEE-EEecccc--------------CH--HHHH
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIW-VVVSKEL--------------KL--ERIQ 196 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~-v~v~~~~--------------~~--~~~~ 196 (237)
...+++++..+..|++++|+|+||+|||||++.|.|..++..|.+...-- .+++++. .. ....
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~ 752 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL 752 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence 34688899999999999999999999999999999998788887543111 1222221 00 0111
Q ss_pred HH---------HHHHC--CCC----CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 197 ED---------IGKKI--RLP----TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 197 ~~---------il~~~--~~~----~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+ .++.+ |+. ......++|++++..|+++|..++.+++|||
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 12 22223 221 1112345699999999999999999999997
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=98.87 E-value=4.9e-09 Score=104.83 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~---------- 190 (237)
..++++++.+..|+.|||||++|+|||||++.+++...+.+|..-+ . -...|+|+.
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 5799999999999999999999999999999999998888885421 0 011233321
Q ss_pred -C-----HHHHHHHHHHHCCC-----------CCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K-----LERIQEDIGKKIRL-----------PTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~-----~~~~~~~il~~~~~-----------~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..+.+.+.++..++ +.. ...-++|++|+..|||+|..++.+||||+
T Consensus 1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1 12233444444333 111 11234589999999999999999999997
No 355
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.87 E-value=2e-09 Score=106.66 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
..++++++.+..|+.++|||++|+|||||+++|.+...+
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999999999865
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.86 E-value=4.9e-09 Score=104.60 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEE-EEeccc-----------------cCHHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIW-VVVSKE-----------------LKLERIQ 196 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~-v~v~~~-----------------~~~~~~~ 196 (237)
..+++++..+..|++++|+|++|+|||||++.|.|..++..|.+.+.-. .+++|+ ++.. ..
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~-~~ 730 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEK-YY 730 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHH-HH
Confidence 4799999999999999999999999999999999999888887543111 122222 1111 12
Q ss_pred HHHHHHC------CC-C--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 197 EDIGKKI------RL-P--------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 197 ~~il~~~------~~-~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.++++.. +. + ......++|++++..|++++..++.+++|||
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDE 786 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 786 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 2222221 11 1 1112345699999999999999999999997
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.86 E-value=4.6e-09 Score=104.56 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE-EEEeccc-----------------cCHHHH
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI-WVVVSKE-----------------LKLERI 195 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~-~v~v~~~-----------------~~~~~~ 195 (237)
...+++++..+..|++++|+|++|+|||||++.|+|..++..|.+.+.- -.++++. ++.. .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~-~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEY-R 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchH-H
Confidence 3478899999999999999999999999999999999988888754311 0112221 1110 1
Q ss_pred HHHHH---------HHCCCCC------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIG---------KKIRLPT------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il---------~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+.+ ..+.... .....++|++++..|++++..++.+++|||
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDe 574 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 574 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11222 2221111 112345699999999999999999999997
No 358
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.85 E-value=3.8e-09 Score=96.86 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC---CCcceE-------------EEEE----------Ee
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG---GHNFDI-------------VIWV----------VV 186 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~---~~~f~~-------------~~~v----------~v 186 (237)
....+++++..+..|++++|+|++|+|||||+++|.|..++. .|...+ ..++ +|
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 445789999999999999999999999999999999987442 342211 0111 11
Q ss_pred cccc------------C---HHHHHHHHHHHCCCCCC---Cc-------CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 187 SKEL------------K---LERIQEDIGKKIRLPTD---SW-------KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 187 ~~~~------------~---~~~~~~~il~~~~~~~~---~~-------~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.++. . ......++++.+|+... .. ..++|++++..|+++|..+|.+++|||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 1100 0 12245678888887531 11 245689999999999999999999997
No 359
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.83 E-value=4.4e-09 Score=104.23 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF 178 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f 178 (237)
..++++++.+..|++++|+|+||+|||||+++|.+...+.+|.+
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 442 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE
Confidence 58999999999999999999999999999999999988888864
No 360
>PTZ00243 ABC transporter; Provisional
Probab=98.83 E-value=4.5e-09 Score=104.88 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~---------- 190 (237)
..++++++.+..|+.|+|||++|+|||||++.+.+...+.+|..-+ .....++|+.
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence 4799999999999999999999999999999999999888885421 0111233321
Q ss_pred -CH-----HHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcC-CcEEEecC
Q 044827 191 -KL-----ERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKK-KFLLLLDD 237 (237)
Q Consensus 191 -~~-----~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~-~~LlvLDd 237 (237)
++ .+.+.+.++..++.. .....++|++|+..|+|+|..+ +.+||||+
T Consensus 1404 Idp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDE 1472 (1560)
T PTZ00243 1404 VDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDE 1472 (1560)
T ss_pred hCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 11 233455666555421 0112345899999999999985 78999997
No 361
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.82 E-value=2.4e-08 Score=85.68 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEE-----ecccc--CHHHHHHHHHH--------------HCCC
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVV-----VSKEL--KLERIQEDIGK--------------KIRL 205 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~-----v~~~~--~~~~~~~~il~--------------~~~~ 205 (237)
+++++|+||||+||||++++++|-.+|..|. ....-++ ++.++ +...++..+.. -|.+
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l 445 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL 445 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence 3999999999999999999999999888886 2222221 22222 33333333333 2333
Q ss_pred CC----CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 206 PT----DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 206 ~~----~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.. .....++|+-|+..++.+|.....|.+||+
T Consensus 446 ~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDE 481 (591)
T COG1245 446 EDLLERPVDELSGGELQRVAIAAALSREADLYLLDE 481 (591)
T ss_pred HHHHhcccccCCchhHHHHHHHHHhccccCEEEecC
Confidence 21 112345689999999999999999999996
No 362
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=5.1e-09 Score=99.36 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------EEEE-----Eecccc----------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------VIWV-----VVSKEL---------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------~~~v-----~v~~~~---------- 190 (237)
.+++++++.+..|+.++|||++|+||||+++++.+...|..|..-. ..|. .|+|++
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eN 446 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIREN 446 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHH
Confidence 6788999999999999999999999999999999999888885421 1111 223321
Q ss_pred --------CHHHHHHHHHHH---------C--CCC----CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------KLERIQEDIGKK---------I--RLP----TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------~~~~~~~~il~~---------~--~~~----~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+..+ ..+.++. + |.. ......++|++||..||++|..+|.+|+||+
T Consensus 447 I~~G~~dat~~~-i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDE 515 (1228)
T KOG0055|consen 447 IRYGKPDATREE-IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDE 515 (1228)
T ss_pred HhcCCCcccHHH-HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecC
Confidence 1111 1222211 1 110 1122355799999999999999999999996
No 363
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.80 E-value=1.6e-07 Score=77.35 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhcC-CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCcCC
Q 044827 134 QATFQKVLNCLAEN-AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSWKN 212 (237)
Q Consensus 134 ~~~~~~i~~~l~~~-~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~~ 212 (237)
...+..+...+..+ ..+.|+|++|+|||||++.+++...+ +.+ ...|+ +....+..+++..++..+|++......
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~--~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~ 104 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ--ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDK 104 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC--CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCH
Confidence 44566666666655 58999999999999999999997632 221 22233 223456677888899999886321110
Q ss_pred CC-HHHHHHHHHH-HhhcCCcEEEecC
Q 044827 213 RS-IENEARDIYN-ILRKKKFLLLLDD 237 (237)
Q Consensus 213 ~~-~~~~~~~l~~-~l~~~~~LlvLDd 237 (237)
.. ..+....+.. ...+++.+||+||
T Consensus 105 ~~~~~~l~~~l~~~~~~~~~~vliiDe 131 (269)
T TIGR03015 105 AALLRELEDFLIEQFAAGKRALLVVDE 131 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 00 1111222222 3356788999997
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.80 E-value=8.1e-09 Score=103.10 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~--------- 190 (237)
...++++++.+..|+.+||||++|+|||||++.+++...+.+|..-+ . ....++|+.
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHH
Confidence 35899999999999999999999999999999999999888885421 0 001222221
Q ss_pred --C-----HHHHHHHHHHHCCCC-----------CC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K-----LERIQEDIGKKIRLP-----------TD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~-----~~~~~~~il~~~~~~-----------~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..+.+.+.++..++. .. ...-++|++|+..|+|+|..++.+||||+
T Consensus 1379 NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDE 1447 (1522)
T TIGR00957 1379 NLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDE 1447 (1522)
T ss_pred HcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1 122234445544331 10 11233489999999999999999999997
No 365
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.78 E-value=1e-07 Score=82.90 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=72.6
Q ss_pred CcccchHHHHHHHHHHhhcC------CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAEN------AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGK 201 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~------~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~ 201 (237)
..++||+.+++.+...+... ..+.|+|+.|+||||+++.+++.... .+..-..+++......+...++..++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 56899999999988887432 56789999999999999999987632 221222344444444566778888888
Q ss_pred HCCCCCCCcCCCCHHHHHHHHHHHhhc--CCcEEEecC
Q 044827 202 KIRLPTDSWKNRSIENEARDIYNILRK--KKFLLLLDD 237 (237)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvLDd 237 (237)
+++.........+..+....+...+.. ++.+||+||
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE 146 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDD 146 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 886421111222344455556666653 457899997
No 366
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.1e-08 Score=88.50 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------------------EEE
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------------------VIW 183 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------------------~~~ 183 (237)
+...+.++++.+..|+.+++|||+|.||||++++++....-.+|...+ .+.
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~ 629 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTIL 629 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceee
Confidence 456789999999999999999999999999999999887545553221 111
Q ss_pred --EEeccc-cCHHHH-----HHHHHHH-CCCC--------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 184 --VVVSKE-LKLERI-----QEDIGKK-IRLP--------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 184 --v~v~~~-~~~~~~-----~~~il~~-~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+...+. .+.+++ ..+|-++ ++++ ......++|++++..+++.+...|.+|+||+
T Consensus 630 yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE 700 (790)
T KOG0056|consen 630 YNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE 700 (790)
T ss_pred eheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc
Confidence 111111 111211 1112222 1222 1123456799999999999999999999996
No 367
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.77 E-value=8.1e-09 Score=92.32 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE-----EEE---------------Eecccc--C
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV-----IWV---------------VVSKEL--K 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~-----~~v---------------~v~~~~--~ 191 (237)
...+++++..+..|+-+-|.|++|+|||||+|.|+|..+-.+|....- .++ +..... -
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~ 485 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDF 485 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCC
Confidence 367888899999999999999999999999999999996666654321 221 111111 1
Q ss_pred HHHHHHHHHHHCCCCCC----------CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 LERIQEDIGKKIRLPTD----------SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~~~~~~~il~~~~~~~~----------~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+.+.+++.+.|+.+- ....++|+||+..+|+.+.+||.++|||+
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE 541 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec
Confidence 23455677777777421 11234599999999999999999999996
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.77 E-value=2.3e-08 Score=80.43 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHH
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLL 164 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~ 164 (237)
...++++++.+..|++++|+|+||+|||||+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3568889999999999999999999999996
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=98.77 E-value=4.4e-09 Score=104.00 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc--CCCcceE-----------EEEEEecccc---------
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY--GGHNFDI-----------VIWVVVSKEL--------- 190 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~--~~~~f~~-----------~~~v~v~~~~--------- 190 (237)
+...+++++..+..|++++|+|+||+|||||++.|+|...+ ..|...+ ..-..+.|+.
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 34578999999999999999999999999999999998632 3443211 0001122210
Q ss_pred ---------------CH---HHHHHHHHHHCCCCCCC---------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------------KL---ERIQEDIGKKIRLPTDS---------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------------~~---~~~~~~il~~~~~~~~~---------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. .....++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDE 1045 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE 1045 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 00 11245678888875311 1234589999999999999999999996
No 370
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.76 E-value=3.6e-09 Score=104.60 Aligned_cols=103 Identities=16% Similarity=0.024 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc----ccCCCcceE------------EE-EEEecccc-------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF----CYGGHNFDI------------VI-WVVVSKEL------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~----~~~~~~f~~------------~~-~v~v~~~~------- 190 (237)
..+++++..+..|++++|+|+||+|||||++.|+|.. .+.+|.+.+ .. ...+.++.
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 4688888899999999999999999999999999975 234554321 00 11122210
Q ss_pred ---------------------CHH----HHHHHHHHHCCCCCCCc---------CCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 191 ---------------------KLE----RIQEDIGKKIRLPTDSW---------KNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 191 ---------------------~~~----~~~~~il~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
... .....+++.+|+.+... ..++|++++..|+++|..++.+++||
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 001 11245788888864221 24569999999999999999999999
Q ss_pred C
Q 044827 237 D 237 (237)
Q Consensus 237 d 237 (237)
+
T Consensus 235 E 235 (1394)
T TIGR00956 235 N 235 (1394)
T ss_pred C
Confidence 7
No 371
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.76 E-value=3e-08 Score=83.80 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE----------------------EE---Eecc-
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI----------------------WV---VVSK- 188 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~----------------------~v---~v~~- 188 (237)
-.+..|+..++.|+++-|+|.||+||||+++.+.|...|.+|..-+-- |. .+..
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 457788899999999999999999999999999999988888542200 00 0110
Q ss_pred ccCHHHHHHHHHHHCCCC------CCC---cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 ELKLERIQEDIGKKIRLP------TDS---WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 ~~~~~~~~~~il~~~~~~------~~~---~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.....+...++++.+. +.. .+.+.|++++..+-.++.+.|.++|+|+
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE 474 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE 474 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh
Confidence 101122223334444332 211 2334589999888889999999999996
No 372
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.74 E-value=5.1e-09 Score=103.56 Aligned_cols=104 Identities=20% Similarity=0.184 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc---cCCCcceE--E--------EEEEecccc------C---
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC---YGGHNFDI--V--------IWVVVSKEL------K--- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~---~~~~~f~~--~--------~~v~v~~~~------~--- 191 (237)
...+++++..+..|++++|+|+||+|||||+++|+|..+ +..|...+ . .-..+.|+. +
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E 855 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRE 855 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHH
Confidence 457899999999999999999999999999999999874 24454311 0 001222210 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCCc--------CCCCHHHHHHHHHHHhhcCCc-EEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDSW--------KNRSIENEARDIYNILRKKKF-LLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~~~~-LlvLDd 237 (237)
......++++.+++..... ..++|++++..|+++|..+|. +|+||+
T Consensus 856 ~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDE 928 (1394)
T TIGR00956 856 SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDE 928 (1394)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcC
Confidence 0123456788888753211 244689999999999999995 999996
No 373
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.72 E-value=1.9e-08 Score=86.06 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=64.0
Q ss_pred HHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc--cCHHHHHHHHHHHCCCCCCCcCCCCHH
Q 044827 139 KVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE--LKLERIQEDIGKKIRLPTDSWKNRSIE 216 (237)
Q Consensus 139 ~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~--~~~~~~~~~il~~~~~~~~~~~~~~~~ 216 (237)
++..-+..|+.++|+|++|+|||||++.|++.. .. .+|+...|+.+.++ .+..++++.++..+=... ...+...
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I-~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast--~d~p~~~ 235 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI-TR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPASR 235 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh-cc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEec--CCCChHH
Confidence 455566778999999999999999999999987 32 27999999999866 678888888744322111 1111111
Q ss_pred -----HHHHHHHHHh--hcCCcEEEecC
Q 044827 217 -----NEARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 217 -----~~~~~l~~~l--~~~~~LlvLDd 237 (237)
......++.+ .++..+|++|+
T Consensus 236 ~~~va~~v~e~Ae~~~~~GkdVVLlIDE 263 (415)
T TIGR00767 236 HVQVAEMVIEKAKRLVEHKKDVVILLDS 263 (415)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 1122222222 46888999996
No 374
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.70 E-value=3.5e-08 Score=98.40 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~--------- 190 (237)
...++++++.+..|+.|+|||++|+|||||++.|++.. +.+|..-+ . -...++|+.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~-~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-STEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-CCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH
Confidence 45799999999999999999999999999999999998 46675311 0 011223321
Q ss_pred --C-----HHHHHHHHHHHCCCCC-----------C----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --K-----LERIQEDIGKKIRLPT-----------D----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~-----~~~~~~~il~~~~~~~-----------~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..+.+.+.++..++.. . ....++|++|+..|+|+|..++.+||||+
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDE 1379 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDE 1379 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 1 1233455566554421 0 01234589999999999999999999996
No 375
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=3.3e-08 Score=90.32 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc---CCCcceE-----------EEEEEecccc--------
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY---GGHNFDI-----------VIWVVVSKEL-------- 190 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~---~~~~f~~-----------~~~v~v~~~~-------- 190 (237)
....+++++.....|++.||.|++|+|||||+++++|.... ..|..-. ..--.|.|+.
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 45678888888999999999999999999999999998732 2221110 0001122210
Q ss_pred -------------------CHHHHHHHHHHHCCCCCCCc---------CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------------------KLERIQEDIGKKIRLPTDSW---------KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------------------~~~~~~~~il~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+++.++|+..-.. .-++||++|..++.-+.+.|.+|+||+
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDE 196 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDE 196 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecC
Confidence 12456688999999862111 133589999999999999999999997
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=98.69 E-value=5.7e-09 Score=103.26 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC---CCcceE--E---------EEEEecccc------CH-
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG---GHNFDI--V---------IWVVVSKEL------KL- 192 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~---~~~f~~--~---------~~v~v~~~~------~~- 192 (237)
..++++++..+..|++++|+|+||+|||||+++|+|...+. .|.+.+ . .-..+.++. +.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 34688888888999999999999999999999999987554 453311 0 001122210 00
Q ss_pred ------------------------H---------------------------HHHHHHHHHCCCCCCC---------cCC
Q 044827 193 ------------------------E---------------------------RIQEDIGKKIRLPTDS---------WKN 212 (237)
Q Consensus 193 ------------------------~---------------------------~~~~~il~~~~~~~~~---------~~~ 212 (237)
. .....+++.+|+.... ...
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 0 0124577888886321 134
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 213 RSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 213 ~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++|++++..|+++|..++.+++||+
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDE 362 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDE 362 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeC
Confidence 5699999999999999999999997
No 377
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.68 E-value=8e-08 Score=75.68 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=57.8
Q ss_pred HHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC---------cc----------eEEEEE-EeccccC------HH
Q 044827 140 VLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH---------NF----------DIVIWV-VVSKELK------LE 193 (237)
Q Consensus 140 i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~---------~f----------~~~~~v-~v~~~~~------~~ 193 (237)
++..+..| +++|+|+||+|||||+++|++..++..+ .. .....+ .+.++++ ..
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~ 94 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQ 94 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEeh
Confidence 44455666 9999999999999999999977532211 00 001111 2223221 12
Q ss_pred HHHHHHHHHCCCCCCC-cCCCCHHHHHHHHHHHhh----cCCcEEEecC
Q 044827 194 RIQEDIGKKIRLPTDS-WKNRSIENEARDIYNILR----KKKFLLLLDD 237 (237)
Q Consensus 194 ~~~~~il~~~~~~~~~-~~~~~~~~~~~~l~~~l~----~~~~LlvLDd 237 (237)
..+.++++..+..... ...++|++++..|++++. .++.+++||+
T Consensus 95 ~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 95 GDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred hhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 3445566552221111 233458889999999875 5668999996
No 378
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=6.6e-08 Score=93.71 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------EEEE---Eec------cccCHHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------VIWV---VVS------KELKLERIQ 196 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------~~~v---~v~------~~~~~~~~~ 196 (237)
..+++|+..+..|+.++|+|+-|+|||+|+..|.|..+..+|.... ..|+ ++. .+++. +..
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~-~rY 613 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDE-ERY 613 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccH-HHH
Confidence 3899999999999999999999999999999999999888886543 2343 111 12232 333
Q ss_pred HHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 197 EDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 197 ~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
++.++...+. ......++|+++|..|||++..+..+.+|||
T Consensus 614 ~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 614 DKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred HHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 4445444332 1112345689999999999999999999998
No 379
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=9.6e-08 Score=69.84 Aligned_cols=89 Identities=24% Similarity=0.395 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccccCC--CcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCcCCCCHHHHHHHHHH
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCYGG--HNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSWKNRSIENEARDIYN 224 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~~~--~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~ 224 (237)
+..+.|+|++|+||||+++.+........ ..-...+|+......+...+...++..++..... ..+.......+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 46789999999999999999998762110 0023345888777778899999999999875432 2345666677777
Q ss_pred HhhcCCc-EEEecC
Q 044827 225 ILRKKKF-LLLLDD 237 (237)
Q Consensus 225 ~l~~~~~-LlvLDd 237 (237)
.+...+. +||+||
T Consensus 82 ~l~~~~~~~lviDe 95 (131)
T PF13401_consen 82 ALDRRRVVLLVIDE 95 (131)
T ss_dssp HHHHCTEEEEEEET
T ss_pred HHHhcCCeEEEEeC
Confidence 7776665 999997
No 380
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.64 E-value=1.2e-07 Score=81.07 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=59.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc--CHHHHHHHHHHHCCCCCCCcCCCCHHHH----
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL--KLERIQEDIGKKIRLPTDSWKNRSIENE---- 218 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~--~~~~~~~~il~~~~~~~~~~~~~~~~~~---- 218 (237)
-.|+..+|+|++|+|||||++.|++.. ... +|++.+|+.+.++. ...+++++++..+=. .....+.+.+.
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I-~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~--st~d~~~~~~~~~a~ 242 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSI-TTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVA--STFDEPAERHVQVAE 242 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHH-Hhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEE--ECCCCCHHHHHHHHH
Confidence 346999999999999999999999987 333 89999999998876 556666666521111 11222222222
Q ss_pred -HHHHHHHh--hcCCcEEEecC
Q 044827 219 -ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 219 -~~~l~~~l--~~~~~LlvLDd 237 (237)
....++.+ .++..+|++|+
T Consensus 243 ~~ie~Ae~~~e~G~dVlL~iDs 264 (416)
T PRK09376 243 MVIEKAKRLVEHGKDVVILLDS 264 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEEEC
Confidence 22334443 45888999996
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.63 E-value=2.8e-07 Score=74.88 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 044827 147 NAIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~ 168 (237)
+++++|+||||+|||||+++|+
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999999998
No 382
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=4.3e-08 Score=93.22 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----EE----E-----EEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----VI----W-----VVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~~----~-----v~v~~~~--------- 190 (237)
...+++++..+..|+.+|||||+|+||||.+.+|-..+.+..|..-. .- | .-|+|++
T Consensus 1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrE 1082 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRE 1082 (1228)
T ss_pred chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHH
Confidence 46799999999999999999999999999999998887787875422 00 1 1233332
Q ss_pred ---------CHHHHHHHHHHHC-------CCCC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLERIQEDIGKKI-------RLPT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~~~~~il~~~-------~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+..++ .+.++.. +++. .....++|++||..|||++..+|.+|+||+
T Consensus 1083 NI~YG~~~vs~~eI-i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDE 1152 (1228)
T KOG0055|consen 1083 NIAYGSEEVSEEEI-IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDE 1152 (1228)
T ss_pred HHhccCCCCCHHHH-HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeec
Confidence 11221 2222221 1221 112344699999999999999999999996
No 383
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.61 E-value=6.1e-07 Score=77.21 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=71.1
Q ss_pred CcccchHHHHHHHHHHhhc---C---CEEEEEcCCCCcHHHHHHHHHhccccCCCc--c-eEEEEEEeccccCHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAE---N---AIIGLYGSGGVGKTTLLKQINNNFCYGGHN--F-DIVIWVVVSKELKLERIQED 198 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~---~---~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~--f-~~~~~v~v~~~~~~~~~~~~ 198 (237)
..++||+.+++.+...+.. + ..+.|+|+.|+|||++++.+++........ . -..+|+......+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999888863 2 678999999999999999999865221111 1 12345554444566777888
Q ss_pred HHHHC---CCCCCCcCCCCHHHHHHHHHHHhh--cCCcEEEecC
Q 044827 199 IGKKI---RLPTDSWKNRSIENEARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 199 il~~~---~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvLDd 237 (237)
+++++ +.... ....+..+....+...+. +++.+||||+
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE 137 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDE 137 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 88877 33211 111233444445555553 4567899996
No 384
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.60 E-value=4.9e-08 Score=82.76 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC--------cceEEEEE----------------Eecc
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH--------NFDIVIWV----------------VVSK 188 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~--------~f~~~~~v----------------~v~~ 188 (237)
....+++|++.+..|+.++|||.+|+|||..+..|.+.. +..+ .|+-.-.+ .+.+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL-p~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc-CCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 446789999999999999999999999999999999998 4321 23221110 1111
Q ss_pred cc---------------------------CHHHHHHHHHHHCCCCCC-------CcCCCCHHHHHHHHHHHhhcCCcEEE
Q 044827 189 EL---------------------------KLERIQEDIGKKIRLPTD-------SWKNRSIENEARDIYNILRKKKFLLL 234 (237)
Q Consensus 189 ~~---------------------------~~~~~~~~il~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~Llv 234 (237)
+. .......++++..|++.. .+..++|+.++.+|+.+|.++|.|||
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLI 180 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEe
Confidence 10 112334567788888643 23456799999999999999999999
Q ss_pred ecC
Q 044827 235 LDD 237 (237)
Q Consensus 235 LDd 237 (237)
.|+
T Consensus 181 ADE 183 (534)
T COG4172 181 ADE 183 (534)
T ss_pred ecC
Confidence 996
No 385
>PTZ00202 tuzin; Provisional
Probab=98.55 E-value=3.7e-06 Score=72.84 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=54.6
Q ss_pred CcccchHHHHHHHHHHhhcC-----CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAEN-----AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKK 202 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~-----~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~ 202 (237)
..|+||+.++..+...+... .++.|+|++|+|||||++.+..... ...++ ....+..+.++.++..
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-------~~qL~--vNprg~eElLr~LL~A 332 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-------MPAVF--VDVRGTEDTLRSVVKA 332 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-------ceEEE--ECCCCHHHHHHHHHHH
Confidence 57899999999998877532 6899999999999999999998652 11222 2222678999999999
Q ss_pred CCCC
Q 044827 203 IRLP 206 (237)
Q Consensus 203 ~~~~ 206 (237)
||++
T Consensus 333 LGV~ 336 (550)
T PTZ00202 333 LGVP 336 (550)
T ss_pred cCCC
Confidence 9984
No 386
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.52 E-value=4.3e-07 Score=70.25 Aligned_cols=43 Identities=26% Similarity=0.486 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHHHh-----hcCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 130 IVGQQATFQKVLNCL-----AENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l-----~~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
++||+.+++.+...+ ..+..+.|+|+.|+|||||++.++....
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999 2338999999999999999999988873
No 387
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.6e-07 Score=79.90 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEE-----------Eeccc--------
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWV-----------VVSKE-------- 189 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v-----------~v~~~-------- 189 (237)
++...+.++++.+..|..++|||++|.||||+++.++......+|.... -+|. .|.++
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti 353 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTI 353 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhH
Confidence 5778899999999999999999999999999999999998777774322 1111 11111
Q ss_pred ----------cCHHHH--------HHHHHHHC------CCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 ----------LKLERI--------QEDIGKKI------RLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ----------~~~~~~--------~~~il~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+..++ +...++.+ +........++|++|+..+++.+..+|.+++||+
T Consensus 354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~de 425 (497)
T COG5265 354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDE 425 (497)
T ss_pred HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEeh
Confidence 011111 11222222 1111123455799999999999999999999996
No 388
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.50 E-value=5.5e-08 Score=82.69 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc--------cCCCcceEEEE---EEec----cccCH--------
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC--------YGGHNFDIVIW---VVVS----KELKL-------- 192 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~--------~~~~~f~~~~~---v~v~----~~~~~-------- 192 (237)
.+++++..+..|++++|+|++|+||||++++|.|... |.+|....... ..+. ..++.
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~ 477 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLR 477 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHh
Confidence 4677777788889999999999999999999999762 22332221100 0111 11221
Q ss_pred -----HHHHHHHHHHCCCCCCCc------CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 -----ERIQEDIGKKIRLPTDSW------KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 -----~~~~~~il~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....-.+++..|+++... ..+.|++.+..||+++.+++.+++.|+
T Consensus 478 s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 478 SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 122345777788764321 234589999999999999999999884
No 389
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.50 E-value=5e-08 Score=92.79 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=80.8
Q ss_pred CcccchHH-HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----EEEEE-------ec---cc--
Q 044827 128 RTIVGQQA-TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----VIWVV-------VS---KE-- 189 (237)
Q Consensus 128 ~~~~g~~~-~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----~~~v~-------v~---~~-- 189 (237)
...||... .+++++..+..+++.|+.|+||+||||+++++.|+.++..|.... ..+.. ++ |.
T Consensus 571 ~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~ 650 (885)
T KOG0059|consen 571 SKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDA 650 (885)
T ss_pred eeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhh
Confidence 34566655 889999999999999999999999999999999999888875332 11111 11 10
Q ss_pred ----------------------cCHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 ----------------------LKLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ----------------------~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+....+..+++.+++.+.. ...++|.+++..++-++.++|.+++||+
T Consensus 651 l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDE 724 (885)
T KOG0059|consen 651 LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDE 724 (885)
T ss_pred hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecC
Confidence 02334456677778875432 2344688999999999999999999996
No 390
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.47 E-value=1.2e-06 Score=64.47 Aligned_cols=41 Identities=37% Similarity=0.554 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHhhc--CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 131 VGQQATFQKVLNCLAE--NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~--~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|++..+..+...+.. +..+.|+|++|+|||||++.+++..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3667788888888877 6899999999999999999999976
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.46 E-value=1.7e-06 Score=70.74 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.+|+|+||+|||||+++|++..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll 49 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVL 49 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998764
No 392
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.45 E-value=1.4e-06 Score=68.96 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHH----hccccCC
Q 044827 148 AIIGLYGSGGVGKTTLLKQIN----NNFCYGG 175 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~----~~~~~~~ 175 (237)
.+++|+|+||+|||||+..|+ |...+..
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~ 54 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTGELPPNS 54 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCccc
Confidence 499999999999999999994 7664433
No 393
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.42 E-value=2.6e-06 Score=67.90 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
+++++|+|+||+|||||++.|..
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhee
Confidence 67999999999999999999884
No 394
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.41 E-value=2.5e-07 Score=73.11 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
+..+++++|+|+||+|||||++.|...
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 335589999999999999999999843
No 395
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.39 E-value=4.9e-06 Score=72.59 Aligned_cols=68 Identities=22% Similarity=0.237 Sum_probs=56.6
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQ 196 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~ 196 (237)
..++..+..++.+...+..+..+.+.||+|+||||+|+.++... .....++...|+++++.++....+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHh
Confidence 34677888999999999999999999999999999999999876 334467788899999887765553
No 396
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.39 E-value=6.6e-07 Score=78.96 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------EEEE------Eec-----------
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------VIWV------VVS----------- 187 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------~~~v------~v~----------- 187 (237)
.+..+++++..+.+|+-+-|.|++|||||.|++.+.+..+-.+|+... ..++ ++.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 456788899999999999999999999999999999999556664322 1111 000
Q ss_pred ------cccCHHHHHHH---------HHHHCCCCCC----C--cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 188 ------KELKLERIQED---------IGKKIRLPTD----S--WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 188 ------~~~~~~~~~~~---------il~~~~~~~~----~--~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+..+.. .+.. ++++.|--++ . ...+.|++||..+|+.+..+|-+-|||+
T Consensus 527 ~~~~~~~~~~d~-~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE 596 (659)
T KOG0060|consen 527 AEDMDSKSASDE-DILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE 596 (659)
T ss_pred cccccccCCCHH-HHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec
Confidence 011111 2233 3333332111 0 1233599999999999999999999996
No 397
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=8e-07 Score=86.42 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------------------E-EEe
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------------------W-VVV 186 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------------------~-v~v 186 (237)
+....+++|+..+..++.|||||--|+|||||++.++....+..|+..+ .- + -++
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 3457899999999999999999999999999999999999777785422 10 0 022
Q ss_pred ccccCH-----HHH---------HHHHHHHC--CCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 187 SKELKL-----ERI---------QEDIGKKI--RLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 187 ~~~~~~-----~~~---------~~~il~~~--~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+.|+ .+. +++..+++ |++..- .+-+-|++|...|+|+|..+..+||||+
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDE 1301 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDE 1301 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEec
Confidence 222222 111 23333332 222111 1112388888999999999999999996
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.3e-07 Score=81.01 Aligned_cols=92 Identities=26% Similarity=0.237 Sum_probs=64.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEE---EEecccc--------------------------------
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIW---VVVSKEL-------------------------------- 190 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~---v~v~~~~-------------------------------- 190 (237)
.|..+++|||||.|||||+++|......+..+++.... |.+....
T Consensus 289 ~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~t 368 (807)
T KOG0066|consen 289 YGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTT 368 (807)
T ss_pred ecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchH
Confidence 34889999999999999999999987666666665332 1111110
Q ss_pred ------------------CHHHHHHHHHHHCCCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------------KLERIQEDIGKKIRLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------------~~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......+.|+..+|++... ..-++|-..++.|+++|.-.|-||.||+
T Consensus 369 aaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDE 438 (807)
T KOG0066|consen 369 AAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDE 438 (807)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecC
Confidence 1122345577777775321 1234588889999999999999999995
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.36 E-value=3.8e-07 Score=71.96 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=24.4
Q ss_pred HHHHhhcC-CEEEEEcCCCCcHHHHHHHHH
Q 044827 140 VLNCLAEN-AIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 140 i~~~l~~~-~vi~IvG~~G~GKTTL~~~i~ 168 (237)
++..+..+ ++++|.||||+|||||++.|.
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 34556666 589999999999999999988
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.35 E-value=5.9e-07 Score=77.37 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=62.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-EEEE-----------------------Eecccc-----------
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-VIWV-----------------------VVSKEL----------- 190 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-~~~v-----------------------~v~~~~----------- 190 (237)
.|.|++|+|+||+||||.+++++|...|.-|.++- .-|- .+.+..
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~K 178 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVK 178 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhc
Confidence 46899999999999999999999998777775542 1111 010000
Q ss_pred ----------CHHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----------KLERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----------~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+......++++++++..- ....++|+-|+..|+.++..+..+.++|+
T Consensus 179 G~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDE 239 (591)
T COG1245 179 GKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE 239 (591)
T ss_pred chHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcC
Confidence 111223455666666421 12345688888999999999999999985
No 401
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.35 E-value=3.3e-06 Score=68.88 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++|+|+||+|||||+.+|+...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l 46 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVL 46 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998655
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=9.3e-07 Score=77.05 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecc-----------------------ccC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSK-----------------------ELK 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~-----------------------~~~ 191 (237)
..+.++.........++++|+||.||||+.+++.++..+..|......-..+.. +-.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 355566666666699999999999999999999998866776433222111110 001
Q ss_pred HHHHHHHHHHHCCCCCCCc-----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 LERIQEDIGKKIRLPTDSW-----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+..+.-+..||++.... ..++|++.+..+|.....+|.|||||+
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 3455677888899975432 245688999999999999999999996
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.32 E-value=6.4e-06 Score=64.90 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=52.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccC-----CC----------cceEEEEEEecc--c----c--CHHHHHHHHHHHCC
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYG-----GH----------NFDIVIWVVVSK--E----L--KLERIQEDIGKKIR 204 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~-----~~----------~f~~~~~v~v~~--~----~--~~~~~~~~il~~~~ 204 (237)
.+.+|+|+||+|||||+..|+...... .+ .....+.+.+.. . . .....+.++++.-.
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTSNK 101 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcccc
Confidence 578999999999999999987432111 01 111223333221 0 1 11234445555411
Q ss_pred CCCC-CcCCCCHHHHHHHHHHHh----hcCCcEEEecC
Q 044827 205 LPTD-SWKNRSIENEARDIYNIL----RKKKFLLLLDD 237 (237)
Q Consensus 205 ~~~~-~~~~~~~~~~~~~l~~~l----~~~~~LlvLDd 237 (237)
.... ....+.|++++..|+.++ ..++.++|||+
T Consensus 102 ~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 102 AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1111 123345888889999988 58999999996
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.31 E-value=2.5e-06 Score=67.28 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++++|+|+||+|||||++.|.+..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 36899999999999999999998754
No 405
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.30 E-value=1.4e-06 Score=69.51 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 044827 148 AIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
.++.|+|+||+|||||++.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999883
No 406
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.24 E-value=6.8e-06 Score=59.84 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..+.|+|++|+||||+++.++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3678999999999999999999987
No 407
>PRK08118 topology modulation protein; Reviewed
Probab=98.24 E-value=8.6e-07 Score=67.94 Aligned_cols=36 Identities=39% Similarity=0.675 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEE
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIW 183 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~ 183 (237)
..|.|+|++|+|||||++.|+.......-+||...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999987433345666663
No 408
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.24 E-value=3.2e-06 Score=67.36 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 044827 148 AIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~ 168 (237)
++++|+||||+|||||+++|.
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999987
No 409
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.18 E-value=7.2e-06 Score=67.25 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHH
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQI 167 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i 167 (237)
-++++...+..|.+++|.|.+|+|||||++.+
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 45666777888899999999999999999866
No 410
>PRK08149 ATP synthase SpaL; Validated
Probab=98.18 E-value=5e-06 Score=72.40 Aligned_cols=102 Identities=15% Similarity=0.272 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc-cCHHHHHHHHHHHCCCCC-
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE-LKLERIQEDIGKKIRLPT- 207 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~-~~~~~~~~~il~~~~~~~- 207 (237)
+.+....++.+ ..+..|+.++|+|++|+|||||++.|++...+ +..+...+... .+...+..+.+....+..
T Consensus 135 l~tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~-----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~ 208 (428)
T PRK08149 135 LITGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEA-----DVFVIGLIGERGREVTEFVESLRASSRREKC 208 (428)
T ss_pred ccCCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCC-----CeEEEEEEeeCCccHHHHHHHHhhcccccce
Confidence 44555678888 88889999999999999999999999986522 22233334432 234444455554433221
Q ss_pred ----CCcCCCCHH-----HHHHHHHHHh--hcCCcEEEecC
Q 044827 208 ----DSWKNRSIE-----NEARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 208 ----~~~~~~~~~-----~~~~~l~~~l--~~~~~LlvLDd 237 (237)
...+.+..+ .....+++++ .++..||++||
T Consensus 209 ~vV~~~sd~p~~~r~~a~~~a~tiAE~fr~~G~~Vll~~Ds 249 (428)
T PRK08149 209 VLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDS 249 (428)
T ss_pred EEEEECCCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 111222222 2334466665 46889999997
No 411
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.18 E-value=3.2e-07 Score=69.56 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=62.5
Q ss_pred HHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------------------EEEEE--
Q 044827 138 QKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------------------VIWVV-- 185 (237)
Q Consensus 138 ~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------------------~~~v~-- 185 (237)
..++..+..|+++-++||||+|||||+-.++|.. +-+|...+ .+|-+
T Consensus 16 ~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred cccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 3445556778999999999999999999999998 66664322 23322
Q ss_pred eccc-cCHHHHHHHHHHHCCCCCCCc----CCCCHHHHHHHHHHHhhc-------CCcEEEecC
Q 044827 186 VSKE-LKLERIQEDIGKKIRLPTDSW----KNRSIENEARDIYNILRK-------KKFLLLLDD 237 (237)
Q Consensus 186 v~~~-~~~~~~~~~il~~~~~~~~~~----~~~~~~~~~~~l~~~l~~-------~~~LlvLDd 237 (237)
.+++ ......+.++...+++.+... ..++|+=++..|+..+.. ...||+||+
T Consensus 95 L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 95 LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 2222 123456677888888864322 233566666666654321 234777774
No 412
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.17 E-value=2.1e-06 Score=66.86 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 044827 149 IIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~ 168 (237)
++.|.|+||.||||+++.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999988
No 413
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.16 E-value=8.1e-06 Score=62.21 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=43.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccCC-----------CcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCcCCCCHH
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYGG-----------HNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSWKNRSIE 216 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~~-----------~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 216 (237)
.++.|+||||+||||+++.+.-...... +.+....-+.. +.... ..+.++
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------i~~~~-------~lS~G~ 82 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL------------IFTRL-------QLSGGE 82 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE------------ehhee-------eccccH
Confidence 5999999999999999998754432222 11111111111 11111 234567
Q ss_pred HHHHHHHHHhhc----CCcEEEecC
Q 044827 217 NEARDIYNILRK----KKFLLLLDD 237 (237)
Q Consensus 217 ~~~~~l~~~l~~----~~~LlvLDd 237 (237)
+++..++++|.. ++.+++||+
T Consensus 83 ~~~~~la~~L~~~~~~~~~llllDE 107 (162)
T cd03227 83 KELSALALILALASLKPRPLYILDE 107 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeC
Confidence 778888888864 678888886
No 414
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.15 E-value=4.2e-07 Score=70.90 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc----CCC--cceEEEEE-------------Eec---c
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY----GGH--NFDIVIWV-------------VVS---K 188 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~----~~~--~f~~~~~v-------------~v~---~ 188 (237)
-|+-+.++.++..+.+|++-++||.+|+|||-+|+.|+|-.+. +.. .|+-.-.. .++ +
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 4777888999999999999999999999999999999997521 011 12110000 000 1
Q ss_pred c-------------------------------cC-HHHHHHHHHHHCCCCCCC-------cCCCCHHHHHHHHHHHhhcC
Q 044827 189 E-------------------------------LK-LERIQEDIGKKIRLPTDS-------WKNRSIENEARDIYNILRKK 229 (237)
Q Consensus 189 ~-------------------------------~~-~~~~~~~il~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~~ 229 (237)
+ |. .+...-+++.+.|+.+.. .+..+|+-+..+|+.++.++
T Consensus 97 eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~Anq 176 (330)
T COG4170 97 EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccC
Confidence 0 01 123344566777775432 12234788889999999999
Q ss_pred CcEEEecC
Q 044827 230 KFLLLLDD 237 (237)
Q Consensus 230 ~~LlvLDd 237 (237)
+.|||.|+
T Consensus 177 PrLLIADE 184 (330)
T COG4170 177 PRLLIADE 184 (330)
T ss_pred CceEeccC
Confidence 99999985
No 415
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.14 E-value=7.1e-06 Score=71.45 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCCCC-----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLPTD----- 208 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~~~----- 208 (237)
..++.+ ..+..|+.++|+|++|+|||||++.|++... .+..+..-+.+... ..++..+++..-++...
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~a 224 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT-----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAA 224 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC-----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEE
Confidence 445555 6677889999999999999999999998652 23445555665433 33344444443333211
Q ss_pred CcCCCCHHHH-----HHHHHHHh--hcCCcEEEecC
Q 044827 209 SWKNRSIENE-----ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 ~~~~~~~~~~-----~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+..++. +..+|+++ .++..||++||
T Consensus 225 tsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~Ds 260 (444)
T PRK08972 225 PADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDS 260 (444)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 0112222222 23466666 56889999997
No 416
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.12 E-value=7e-06 Score=72.36 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEE----------
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWV---------- 184 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v---------- 184 (237)
+....++++++.+..|++++|.|.-|+|+|-|++.|+|..+...|.... ..++
T Consensus 270 ~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~ 349 (500)
T COG1129 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349 (500)
T ss_pred CCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCc
Confidence 3344688999999999999999999999999999999977555553321 0010
Q ss_pred ---------Eec-----------cccCHHHHHHHHHHHCCCCCCCc-----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 185 ---------VVS-----------KELKLERIQEDIGKKIRLPTDSW-----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 185 ---------~v~-----------~~~~~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+++ ..-..........+.+++..... ..++|.||+..|+++|...|.+||||+
T Consensus 350 l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred CCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 000 00112334556677777643221 345699999999999999999999996
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.11 E-value=8.3e-07 Score=70.22 Aligned_cols=35 Identities=23% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++......++++.|.|+||+||||+++.+++..
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444455567999999999999999999997653
No 418
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.11 E-value=1.5e-06 Score=67.59 Aligned_cols=100 Identities=25% Similarity=0.239 Sum_probs=62.6
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc---------ce-------------EEEEEEec---c---
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN---------FD-------------IVIWVVVS---K--- 188 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~---------f~-------------~~~~v~v~---~--- 188 (237)
+.+++..|..+....+||.||+|||||++++.|.. -+.+. |. ...|.... .
T Consensus 30 ~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh-mv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevp 108 (291)
T KOG2355|consen 30 FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH-MVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVP 108 (291)
T ss_pred EEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc-cccCCeEEEcCcCccccccccccCceeEeccccccccccccccc
Confidence 34445678888999999999999999999999876 32221 11 02333111 1
Q ss_pred ---ccCHHH-----------HHHHHHHHCCCCC--CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 189 ---ELKLER-----------IQEDIGKKIRLPT--DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 189 ---~~~~~~-----------~~~~il~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+++..+ .-..++.-+.++- ..+..++|++++..|+.-|..+=.+|+||+
T Consensus 109 lq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDE 173 (291)
T KOG2355|consen 109 LQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 173 (291)
T ss_pred ccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeee
Confidence 122221 1133444444432 123456799999999999987777888885
No 419
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.10 E-value=1.1e-05 Score=70.42 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc-CHHHHHHHHHHHCCCCC-
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL-KLERIQEDIGKKIRLPT- 207 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~-~~~~~~~~il~~~~~~~- 207 (237)
+......++.+ ..+..|++++|+|++|+|||||++.|++...+ +...+..+.+.. ...+.+.+.+..-.+..
T Consensus 139 l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~-----d~~vi~~iGeRgrEv~efl~~~~~~~~~~rt 212 (433)
T PRK07594 139 LMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA-----DSNVLVLIGERGREVREFIDFTLSEETRKRC 212 (433)
T ss_pred eCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCC-----CEEEEEEECCCchHHHHHHHHhhccCCcceE
Confidence 33445677777 88888999999999999999999999997632 234444444432 23233343322111110
Q ss_pred ----CCcCCCCHHHH-----HHHHHHHh--hcCCcEEEecC
Q 044827 208 ----DSWKNRSIENE-----ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 208 ----~~~~~~~~~~~-----~~~l~~~l--~~~~~LlvLDd 237 (237)
.....+..++. ...+|+++ .++..||++||
T Consensus 213 v~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Ds 253 (433)
T PRK07594 213 VIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADS 253 (433)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 00112223332 23366666 46789999997
No 420
>PF05729 NACHT: NACHT domain
Probab=98.10 E-value=1.3e-05 Score=60.69 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=29.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccCCCc----ceEEEEEEecc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYGGHN----FDIVIWVVVSK 188 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~----f~~~~~v~v~~ 188 (237)
+++.|.|++|+||||+++.++..... .+. +.+.+|.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 44 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRD 44 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehh
Confidence 47899999999999999999987632 222 34555665554
No 421
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.09 E-value=1e-05 Score=70.47 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc-CHHHHHHHHHHHCCCCCC-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL-KLERIQEDIGKKIRLPTD- 208 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~-~~~~~~~~il~~~~~~~~- 208 (237)
.+.-..++ ....+..|++++|+|++|+|||||+++|++...+.. .....+.+.. ...++.+..+..-++...
T Consensus 125 ~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~-----gvi~~iGer~~ev~~~~~~~l~~~~~~~tv 198 (418)
T TIGR03498 125 DTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADV-----VVIALVGERGREVREFLEDDLGEEGLKRSV 198 (418)
T ss_pred CCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCE-----EEEEEEeeechHHHHHHHHhhhccccceeE
Confidence 34444454 467788899999999999999999999999763322 2222233322 233344444443333211
Q ss_pred ----CcCCCCHHHH-----HHHHHHHh--hcCCcEEEecC
Q 044827 209 ----SWKNRSIENE-----ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 ----~~~~~~~~~~-----~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+...+. ...+|+++ .++..||++||
T Consensus 199 vv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll~~Ds 238 (418)
T TIGR03498 199 VVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDS 238 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 1122223333 23466766 46788999997
No 422
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.08 E-value=1.8e-06 Score=75.65 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce-----EEEEE------Eec--------cc----
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD-----IVIWV------VVS--------KE---- 189 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~-----~~~~v------~v~--------~~---- 189 (237)
.+..+.++.+.+..|..+.|.||||||||+|.+++.|..+-..|... ...++ +.+ ++
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHH
Confidence 34567788888889999999999999999999999999844334221 11111 111 00
Q ss_pred c----CHHHHHHHHHHHCCC----------C---CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L----KLERIQEDIGKKIRL----------P---TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~----~~~~~~~~il~~~~~----------~---~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ -...-+..|+..+.+ + +.+...++|++|+...|+.+.++|..-|||+
T Consensus 574 ~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 574 MKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred HHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 0 001122333333322 1 1222345799999999999999999999985
No 423
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.07 E-value=1.4e-05 Score=65.87 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=27.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccCCCcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYGGHNF 178 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f 178 (237)
.-++|+|++|+|||||++.+++...+..|.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i 142 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL 142 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE
Confidence 5789999999999999999999997777754
No 424
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.06 E-value=1.7e-05 Score=69.29 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCCCC-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLPTD- 208 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~~~- 208 (237)
......++.+ ..+..|+.++|+|++|+|||||++.|++... .++.+++-+.+... ..++....+..-++...
T Consensus 147 ~TGi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~-----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtv 220 (439)
T PRK06936 147 SLGVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE-----VDVTVLALIGERGREVREFIESDLGEEGLRKAV 220 (439)
T ss_pred cCCcceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC-----CCEEEEEEEccCcHHHHHHHHHHhcccccceeE
Confidence 3344567777 7788899999999999999999999999762 24556666665432 23333333333222211
Q ss_pred ----CcCCCCHHHH-----HHHHHHHh--hcCCcEEEecC
Q 044827 209 ----SWKNRSIENE-----ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 ----~~~~~~~~~~-----~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+...+. ...+|+++ .++..||++||
T Consensus 221 vv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~Ds 260 (439)
T PRK06936 221 LVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDS 260 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 0112223222 23466666 46889999996
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.04 E-value=1.1e-06 Score=61.70 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHH
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~ 168 (237)
++.++..+..++.++|+|++|+|||||++++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 44556667778999999999999999999986
No 426
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=2.4e-05 Score=68.53 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc-CHHHHHHHHHHHCCCCCC--
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL-KLERIQEDIGKKIRLPTD-- 208 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~-~~~~~~~~il~~~~~~~~-- 208 (237)
..-..++.+ ..+..|++++|+|++|+|||||++++++... .+..+...+.... ....+...++..-++...
T Consensus 154 TGi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~-----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvv 227 (451)
T PRK05688 154 VGIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE-----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVV 227 (451)
T ss_pred cceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEE
Confidence 344567777 7788889999999999999999999998652 1233333444332 344444555544444311
Q ss_pred ---CcCCCCHHHH-----HHHHHHHh--hcCCcEEEecC
Q 044827 209 ---SWKNRSIENE-----ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 ---~~~~~~~~~~-----~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+..++. ...+++++ .++..||++||
T Consensus 228 v~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~Ds 266 (451)
T PRK05688 228 VASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDS 266 (451)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecc
Confidence 1122223222 23466666 46889999996
No 427
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=1.6e-05 Score=69.42 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc-cCHHHHHHHHHHHCCCCCC-----C
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE-LKLERIQEDIGKKIRLPTD-----S 209 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~-~~~~~~~~~il~~~~~~~~-----~ 209 (237)
.++. ...+..|+.++|+|++|+|||||++.+++...+..+ ....+.+. ....+.+.+.+..-++... .
T Consensus 146 aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~g-----vI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~t 219 (432)
T PRK06793 146 SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADIN-----VISLVGERGREVKDFIRKELGEEGMRKSVVVVAT 219 (432)
T ss_pred EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeE-----EEEeCCCCcccHHHHHHHHhhhcccceeEEEEEC
Confidence 3444 366677899999999999999999999997743322 12223332 3444555555555444321 1
Q ss_pred cCCCCHHHHHHH-----HHHHh--hcCCcEEEecC
Q 044827 210 WKNRSIENEARD-----IYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 210 ~~~~~~~~~~~~-----l~~~l--~~~~~LlvLDd 237 (237)
.+.+.+++.+.. +|+++ .+++.||++||
T Consensus 220 sd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 220 SDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 122334444433 33333 37899999997
No 428
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.04 E-value=1.7e-05 Score=69.38 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=61.3
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc-cCHHHHHHHHHHHCCCCCC
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE-LKLERIQEDIGKKIRLPTD 208 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~-~~~~~~~~~il~~~~~~~~ 208 (237)
+......++.+ ..+..|++++|+|++|+|||||++.+++...+. ......+.+. ....++.+.+...-++...
T Consensus 147 l~TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d-----~~vi~~iGer~~ev~ef~~~~~~~~~l~rt 220 (441)
T PRK09099 147 LPTGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD-----VNVIALIGERGREVREFIELILGEDGMARS 220 (441)
T ss_pred cCCCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----eEEEEEEccChHHHHHHHHHHhhcCCcceE
Confidence 44555678888 778889999999999999999999999876332 2223333332 2333344444443333211
Q ss_pred -----CcCCCCHHH-----HHHHHHHHh--hcCCcEEEecC
Q 044827 209 -----SWKNRSIEN-----EARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 -----~~~~~~~~~-----~~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+..++ ....+++++ .++..||++||
T Consensus 221 vvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Ds 261 (441)
T PRK09099 221 VVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDS 261 (441)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 011122222 233466666 36788999996
No 429
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.04 E-value=4.9e-06 Score=72.84 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
...+++++..+..|++++|+|++|+|||||++ .+...+..|
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG 59 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG 59 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence 35567777778899999999999999999999 455545555
No 430
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=1.9e-05 Score=67.80 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=38.2
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecc-ccCHHHHHHHHHHHCCCC
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSK-ELKLERIQEDIGKKIRLP 206 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~-~~~~~~~~~~il~~~~~~ 206 (237)
++..+.+++++||+|+||||++..|........|.. .+..++... .....+.++...+.+|++
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLTTDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEecccccccHHHHHHHHHHHcCCc
Confidence 455678999999999999999999998652222221 222332211 123344555556666654
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.04 E-value=1e-05 Score=63.11 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
...+-+...+..+..++|+|++|+|||||++.+.+..++..+
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~ 54 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDER 54 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence 456667777888999999999999999999999998754433
No 432
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.03 E-value=2e-06 Score=68.98 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=49.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccc-cCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc-CCCCHHHHHHHH
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFC-YGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW-KNRSIENEARDI 222 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~-~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~-~~~~~~~~~~~l 222 (237)
..++++.|.|+||+||||+++.|.-..- ...|.| +... .........++..+++.+... ..+.++..+..+
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~-----vpa~--~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~ 100 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCF-----VPCD--SADIPIVDCILARVGASDSQLKGVSTFMAEMLET 100 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCC-----cCcc--cEEEeccceeEeeeccccchhcCcChHHHHHHHH
Confidence 3568999999999999999998763210 111211 1000 000112234455555543322 223466666667
Q ss_pred HHHh--hcCCcEEEecC
Q 044827 223 YNIL--RKKKFLLLLDD 237 (237)
Q Consensus 223 ~~~l--~~~~~LlvLDd 237 (237)
+..+ .+++.|++||+
T Consensus 101 a~il~~~~~~sLvLLDE 117 (222)
T cd03285 101 AAILKSATENSLIIIDE 117 (222)
T ss_pred HHHHHhCCCCeEEEEec
Confidence 7777 57888999996
No 433
>PRK07261 topology modulation protein; Provisional
Probab=98.02 E-value=2e-05 Score=60.60 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|.|+|++|+|||||++.|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 434
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=8.1e-05 Score=64.03 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=73.3
Q ss_pred CcccchHHHHHHHHHHhhcC------CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAEN------AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGK 201 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~------~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~ 201 (237)
..+.+|+..++.+...+..- .-+-|.|+.|+|||+.++.++..........+ .+++......+...++..++.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 34789999998888777531 45889999999999999999998744333333 555655556678888899999
Q ss_pred HCCCCCCCcCCCCHHHHHHHHHHHhh--cCCcEEEecC
Q 044827 202 KIRLPTDSWKNRSIENEARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvLDd 237 (237)
.++-.. ....+..+.-..+...+. ++..++|||+
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDE 131 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDE 131 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 886211 112223333344555544 4788999996
No 435
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.00 E-value=2.3e-05 Score=68.49 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...-..++.+ ..+..|++++|+|+||+|||||+++|.+..
T Consensus 140 ~TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 140 DVGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ccceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 3344678888 888899999999999999999999999976
No 436
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.99 E-value=1.7e-05 Score=66.83 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc-cCHHHHHHHHHHHCCCCCC---
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE-LKLERIQEDIGKKIRLPTD--- 208 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~-~~~~~~~~~il~~~~~~~~--- 208 (237)
....++.+ ..+..|++++|+|++|+|||||++.|++...+ +......+... -+........+..-++...
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv 129 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTA-----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVV 129 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCC-----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEE
Confidence 34567777 77888899999999999999999999997633 22233333332 2334444444444333211
Q ss_pred --CcCCCCHHH-----HHHHHHHHh--hcCCcEEEecC
Q 044827 209 --SWKNRSIEN-----EARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 --~~~~~~~~~-----~~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+.+.+ ....+++.+ .++..||++||
T Consensus 130 ~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Ds 167 (326)
T cd01136 130 VATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDS 167 (326)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 112222222 223455555 46888999996
No 437
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=3.2e-05 Score=67.87 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
....++.+ ..+..|++++|+|++|+|||||+++|.+...+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~ 184 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA 184 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34567777 88889999999999999999999999998744
No 438
>PRK05922 type III secretion system ATPase; Validated
Probab=97.97 E-value=2.7e-05 Score=68.00 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc-cCHHHHHHHHHHHCCCCCCC----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE-LKLERIQEDIGKKIRLPTDS---- 209 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~-~~~~~~~~~il~~~~~~~~~---- 209 (237)
..++.+ ..+..|+.++|+|+||+|||||++.|.+...+..+ ..+.+.+. ......+.+....+......
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~g-----vi~liGerg~ev~eyl~q~~~~~~~~rTVlv~a 219 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTIN-----VIALIGERGREVREYIEQHKEGLAAQRTIIIAS 219 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCce-----EEEEeCCCCchHHHHHHHHHhhccccceEEEEE
Confidence 344443 66778899999999999999999999997643322 22222221 12233444444433332110
Q ss_pred -cCCCCHHH-----HHHHHHHHh--hcCCcEEEecC
Q 044827 210 -WKNRSIEN-----EARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 210 -~~~~~~~~-----~~~~l~~~l--~~~~~LlvLDd 237 (237)
.+.+..++ ....+|+++ .++..||++||
T Consensus 220 tsd~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Ds 255 (434)
T PRK05922 220 PAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDS 255 (434)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 11222222 233466666 46889999996
No 439
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.94 E-value=1.4e-05 Score=63.47 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=34.0
Q ss_pred CcccchHHHHHHHHHHhhc----C---CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAE----N---AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~----~---~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++|.++.++++...+.. + .-+-++||+|+||||||++|++..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 4689999998887665542 2 678999999999999999999976
No 440
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.93 E-value=0.00013 Score=62.50 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=56.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-EEEEEeccc-cCHHHHHHHHHHHCCCCCCCcCCCCHH-----HH
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-VIWVVVSKE-LKLERIQEDIGKKIRLPTDSWKNRSIE-----NE 218 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-~~~v~v~~~-~~~~~~~~~il~~~~~~~~~~~~~~~~-----~~ 218 (237)
.|+...|+|+.|+|||||++.+++..... +-+. .+|+.+.+. ....++.+.+...+..+.. ...... ..
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~--de~~~~~~~v~~~ 207 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF--DRPPDEHIRVAEL 207 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC--CCCHHHHHHHHHH
Confidence 56999999999999999999988866222 2233 466667654 4566777777776654321 111211 12
Q ss_pred HHHHHHHh--hcCCcEEEecC
Q 044827 219 ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 219 ~~~l~~~l--~~~~~LlvLDd 237 (237)
...++..+ .++..+||+|+
T Consensus 208 ~~~~Ae~f~~~GkdVVLvlDs 228 (380)
T PRK12608 208 VLERAKRLVEQGKDVVILLDS 228 (380)
T ss_pred HHHHHHHHHHcCCCEEEEEeC
Confidence 22344444 36888999996
No 441
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=8.1e-05 Score=64.92 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++++++|+||+||||++..|++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998753
No 442
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.93 E-value=2.6e-05 Score=56.65 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 044827 150 IGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 150 i~IvG~~G~GKTTL~~~i~~~~ 171 (237)
|.|+|++|+||||+++.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999986
No 443
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.93 E-value=2.6e-05 Score=69.00 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=26.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
.+.+++++|+||+||||++..|++......|.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 36899999999999999999999876334443
No 444
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.92 E-value=1.2e-05 Score=64.16 Aligned_cols=42 Identities=36% Similarity=0.582 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 130 IVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
|+||+.+++.+...+..+ ..+.|+|+.|+|||+|++.+....
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 689999999999999875 899999999999999999999866
No 445
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.92 E-value=5e-05 Score=64.70 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=30.9
Q ss_pred cccchHHHH---HHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATF---QKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~---~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+..+ ..+-..+..+ .-.-+|||+|+||||||++|++..
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 456655544 3344455555 455689999999999999999954
No 446
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.91 E-value=6.7e-05 Score=62.40 Aligned_cols=87 Identities=23% Similarity=0.367 Sum_probs=47.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecc-ccCHHHHHHHHHHHCCCCCCCcCCCCHHHHHHHHHH
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSK-ELKLERIQEDIGKKIRLPTDSWKNRSIENEARDIYN 224 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~-~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~ 224 (237)
.+.+++|+|++|+||||++..++.......|.+. +..++... .......+....+.++++... ..+.......+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~-V~li~~D~~r~~a~eql~~~~~~~~~p~~~--~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKK-VALITTDTYRIGAVEQLKTYAKILGVPVKV--ARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCe-EEEEECCccchhHHHHHHHHHHHhCCceec--cCCHHHHHHHHHH
Confidence 3579999999999999999999887622213222 22333221 112233445555566664321 1233333333333
Q ss_pred HhhcCCcEEEecC
Q 044827 225 ILRKKKFLLLLDD 237 (237)
Q Consensus 225 ~l~~~~~LlvLDd 237 (237)
+ ....+||+|.
T Consensus 270 ~--~~~d~vliDt 280 (282)
T TIGR03499 270 L--RDKDLILIDT 280 (282)
T ss_pred c--cCCCEEEEeC
Confidence 2 3457888883
No 447
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.91 E-value=9.1e-05 Score=64.76 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.....++.+ ..+..|++++|+|++|+|||||++.|++..
T Consensus 143 tgi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 143 VGVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred chhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 345577777 778889999999999999999999999865
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.91 E-value=0.0001 Score=55.34 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.|+|++|+||||+++.+++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999877
No 449
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.90 E-value=0.00071 Score=63.82 Aligned_cols=44 Identities=32% Similarity=0.447 Sum_probs=37.2
Q ss_pred CcccchHHHHHHHHHHhh--------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...||.+...+.|..++. .+.++.++||+|+||||+++.+++..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347899888888876665 34899999999999999999999866
No 450
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.90 E-value=7.7e-05 Score=65.35 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=35.9
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
+......++.+ ..+..+++++|+|++|+|||||+++|++...
T Consensus 129 l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~ 170 (422)
T TIGR02546 129 LPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS 170 (422)
T ss_pred cCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC
Confidence 33445678888 8888999999999999999999999999763
No 451
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.89 E-value=4e-05 Score=61.80 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=28.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEE
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVV 185 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~ 185 (237)
...-.++|+|+.|+|||||+..|.... ...|....+++
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t 48 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLIT 48 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEe
Confidence 334588999999999999999988755 44666655553
No 452
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.88 E-value=9.6e-06 Score=64.33 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.+.+++|+|++|+|||||++.|++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 458999999999999999999999763
No 453
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.88 E-value=1.1e-05 Score=58.07 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|.|.|++|+||||+++.|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 454
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.88 E-value=0.00034 Score=57.98 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcC-----CEEEEEcCCCCcHHHHHHHHHhccccCCCc-ce--EEEEEEeccccCHHHHHHHHHHHCCCC
Q 044827 135 ATFQKVLNCLAEN-----AIIGLYGSGGVGKTTLLKQINNNFCYGGHN-FD--IVIWVVVSKELKLERIQEDIGKKIRLP 206 (237)
Q Consensus 135 ~~~~~i~~~l~~~-----~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~-f~--~~~~v~v~~~~~~~~~~~~il~~~~~~ 206 (237)
..++.+...+... .-+.|||.+|.||||+++......++.... -. .++.+......+...+...|+..+|.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 4455555555443 668999999999999999999877443221 11 244556667788999999999999987
Q ss_pred CCCcCCCC-HHHHHHHHHHHhhcCCcEEEecC
Q 044827 207 TDSWKNRS-IENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 207 ~~~~~~~~-~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
........ .+++...+-+.+ +..+||+|+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~--~vrmLIIDE 153 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRL--GVRMLIIDE 153 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHc--CCcEEEeec
Confidence 54322222 222222333333 566899986
No 455
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.88 E-value=5.6e-05 Score=66.42 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.....++.+ ..+..|++++|+|++|+|||||++.|.+..
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334566776 778889999999999999999999999976
No 456
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.88 E-value=1.1e-05 Score=64.50 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=28.7
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHh-ccccCCCcc
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINN-NFCYGGHNF 178 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~-~~~~~~~~f 178 (237)
..+..++++.|.|+||+||||+++.+.+ ...+..|.|
T Consensus 26 ~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~ 63 (222)
T cd03287 26 LSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF 63 (222)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 3445678999999999999999999998 333445544
No 457
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.86 E-value=3.6e-05 Score=67.07 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc-CHHHHHHHHHHHCCCCCC---
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL-KLERIQEDIGKKIRLPTD--- 208 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~-~~~~~~~~il~~~~~~~~--- 208 (237)
.-..++.+ ..+..|+.++|+|++|+|||||++.|++...+.. .....+.+.. ...+...+.+..-++...
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~-----gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v 197 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADI-----NVIALIGERGREVRDFIEKDLGEEGLKRSVVV 197 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCe-----EEEEEEccchHHHHHHHHHHhcccccceEEEE
Confidence 34556666 7777889999999999999999999998763322 2222333322 223333333333232211
Q ss_pred --CcCCCCHHHH-----HHHHHHHh--hcCCcEEEecC
Q 044827 209 --SWKNRSIENE-----ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 --~~~~~~~~~~-----~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+.+++. ...+|+++ .++..||++||
T Consensus 198 ~~tsd~~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Ds 235 (413)
T TIGR03497 198 VATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDS 235 (413)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 1112223322 24466666 46889999996
No 458
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.86 E-value=6.6e-05 Score=65.85 Aligned_cols=43 Identities=28% Similarity=0.430 Sum_probs=34.0
Q ss_pred cccchHHHHHH---HHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQK---VLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~---i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+..+.. +...+..+ ..+.|+|++|+||||||+.+++..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46787777555 66666655 567889999999999999999865
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.84 E-value=3.2e-05 Score=67.68 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
...++.+. .+..|++++|+|++|+|||||+++|++...+
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~p 191 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAF 191 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34455553 6888999999999999999999999987644
No 460
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.83 E-value=4.7e-05 Score=66.32 Aligned_cols=98 Identities=21% Similarity=0.311 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc-CHHHHHHHHHHHCCCCCC----
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL-KLERIQEDIGKKIRLPTD---- 208 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~-~~~~~~~~il~~~~~~~~---- 208 (237)
...++.+ ..+..|++++|+|++|+|||||++.|.+...+ +..+...+.+.. ...++...++..-++...
T Consensus 125 i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~-----~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~ 198 (411)
T TIGR03496 125 VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEA-----DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVA 198 (411)
T ss_pred EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCC-----CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEE
Confidence 4556666 77788899999999999999999999987632 233334444432 233333333332222211
Q ss_pred -CcCCCCHHHH-----HHHHHHHh--hcCCcEEEecC
Q 044827 209 -SWKNRSIENE-----ARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 209 -~~~~~~~~~~-----~~~l~~~l--~~~~~LlvLDd 237 (237)
..+.+..++. ...+|+++ .++..||++||
T Consensus 199 ~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Ds 235 (411)
T TIGR03496 199 ATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDS 235 (411)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 1122222222 23456665 46789999997
No 461
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.83 E-value=8.4e-05 Score=57.54 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
+..|+|+||+|||+++..|+--
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~ 45 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFV 45 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999998554
No 462
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=6.5e-05 Score=69.74 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+++++|+||+||||++..|++..
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 45799999999999999999999876
No 463
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.80 E-value=9.6e-05 Score=58.10 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEec-cccCHHHHHHHHHHHCCCC
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVS-KELKLERIQEDIGKKIRLP 206 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~-~~~~~~~~~~~il~~~~~~ 206 (237)
.++++|||+|+||||.+-.++...... + ..+..++.. ......+.++...+.++++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~--~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-G--KKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-c--ccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 479999999999999988888776322 2 122333332 1123344555556666554
No 464
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=2.9e-06 Score=81.46 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++...++++...+..|...|++|.+|+|||||++.+++..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~ 841 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK 841 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc
Confidence 5667899999999999999999999999999999999974
No 465
>PRK06820 type III secretion system ATPase; Validated
Probab=97.79 E-value=0.00012 Score=64.24 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-..++.+ ..+..|+.++|+|++|+|||||++.|++..
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccC
Confidence 4556666 667788999999999999999999999865
No 466
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.77 E-value=4.1e-05 Score=61.69 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
.+++|.|+||+|||||++.|.+..++..+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 799999999999999999999988555554
No 467
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00024 Score=63.39 Aligned_cols=28 Identities=36% Similarity=0.671 Sum_probs=24.2
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..+++++|+|++|+||||++..|+...
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457999999999999999999888754
No 468
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.76 E-value=0.0022 Score=60.80 Aligned_cols=43 Identities=35% Similarity=0.511 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHHhh--------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA--------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~--------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+...+.+...+. .+.++.++||+|+||||+++.|++..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888888877776543 23689999999999999999999976
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.76 E-value=2.3e-05 Score=61.05 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
|.++.|+||+|+|||||++.|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998875
No 470
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.74 E-value=0.00022 Score=62.40 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=54.9
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCCCC-----CcCCCCH
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLPTD-----SWKNRSI 215 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~~~-----~~~~~~~ 215 (237)
..+..|++++|+|++|+|||||++.|++...+ +..+.+-+.+... ..+...+.+..-++... ..+.+..
T Consensus 153 ~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~-----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~ 227 (442)
T PRK08927 153 LTCCRGQRMGIFAGSGVGKSVLLSMLARNADA-----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPAL 227 (442)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHH
Confidence 34556799999999999999999999987622 3444455555433 23344444443333211 1112223
Q ss_pred HH-----HHHHHHHHh--hcCCcEEEecC
Q 044827 216 EN-----EARDIYNIL--RKKKFLLLLDD 237 (237)
Q Consensus 216 ~~-----~~~~l~~~l--~~~~~LlvLDd 237 (237)
.+ ....+|+++ .++..|+++||
T Consensus 228 ~r~~a~~~a~tiAEyfrd~G~~Vll~~Ds 256 (442)
T PRK08927 228 MRRQAAYLTLAIAEYFRDQGKDVLCLMDS 256 (442)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 22 233466666 46889999997
No 471
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.74 E-value=2.8e-05 Score=60.11 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.|++++|+|++|+|||||++.+++...
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 468999999999999999999999763
No 472
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.72 E-value=2e-05 Score=63.11 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
+|||.|++|+|||||++.|.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999873
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.72 E-value=4.8e-05 Score=60.08 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|.+++|+|++|+|||||++.+++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356899999999999999999999976
No 474
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.71 E-value=0.0003 Score=59.43 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
+.+++++|+||+||||++..+++...+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 589999999999999999999998743
No 475
>PRK13695 putative NTPase; Provisional
Probab=97.70 E-value=2.7e-05 Score=59.97 Aligned_cols=24 Identities=46% Similarity=0.634 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.++|+|++|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 476
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.70 E-value=0.00029 Score=56.82 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=34.9
Q ss_pred hhcCCEEEEEcCCCCcHHHHH-HHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCC
Q 044827 144 LAENAIIGLYGSGGVGKTTLL-KQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRL 205 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~-~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~ 205 (237)
+..++++.|.|++|+|||||+ +.+++..+ .| ....+++ .+.+...+++.+ ..+|.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g--~~~~yi~--~e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ--NG--YSVSYVS--TQLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh--CC--CcEEEEe--CCCCHHHHHHHH-HHhCC
Confidence 566799999999999999995 77777542 22 2234444 223444555554 44554
No 477
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.67 E-value=3.4e-05 Score=61.24 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=23.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|+|.|++|+|||||++.|++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34799999999999999999999976
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.67 E-value=3.7e-05 Score=59.39 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
|.+++|+|++|+|||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 3689999999999999999999865
No 479
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.67 E-value=0.00053 Score=65.92 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=49.2
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecc-ccCHHHHHHHHHHHCC
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSK-ELKLERIQEDIGKKIR 204 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~-~~~~~~~~~~il~~~~ 204 (237)
+..+-|...++.+.. .....++.|.||.|.||||++....... + ...|+++.. +.++..+...++..++
T Consensus 14 ~~~~~R~rl~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 14 HNTVVRERLLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred cccCcchHHHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHH
Confidence 456777777776643 3445899999999999999999887532 2 578999864 4455666666666653
No 480
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.66 E-value=5.4e-05 Score=64.37 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHHhhc--------CCEEEEEcCCCCcHHHHHHHHHhccccC----CCcceEEEE
Q 044827 129 TIVGQQATFQKVLNCLAE--------NAIIGLYGSGGVGKTTLLKQINNNFCYG----GHNFDIVIW 183 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~--------~~vi~IvG~~G~GKTTL~~~i~~~~~~~----~~~f~~~~~ 183 (237)
.++|.+..++.+...+.. ..+++|+||+|+|||||++.|.+..... .|.+-...|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 689999999999888854 2889999999999999999998887332 345555555
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.66 E-value=9.6e-05 Score=54.19 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..-+.+...+..+.++.+.|+.|+|||||++.++...
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3445566667788999999999999999999999876
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.65 E-value=3.3e-05 Score=60.75 Aligned_cols=23 Identities=43% Similarity=0.744 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|+|.|++|+|||||++.|.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 483
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.64 E-value=5.8e-05 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+..|.|+||+|||||+-++.-..
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999998876544
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.64 E-value=4.6e-05 Score=58.86 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++.|+|++|+|||||++.|....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999998876
No 485
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.63 E-value=0.0008 Score=57.18 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=60.8
Q ss_pred cCcccchHHHHHHHHHHhhcC-----CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHH
Q 044827 127 ERTIVGQQATFQKVLNCLAEN-----AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGK 201 (237)
Q Consensus 127 ~~~~~g~~~~~~~i~~~l~~~-----~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~ 201 (237)
.+.+.+|+..+..+...+-+. .++-|.|..|+|||.+.+.+++.. . ...+|++.-..++....+..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHH
Confidence 356789999999998888765 566899999999999999999865 1 12479999999999999999999
Q ss_pred HCCC
Q 044827 202 KIRL 205 (237)
Q Consensus 202 ~~~~ 205 (237)
+.+.
T Consensus 79 ~~~~ 82 (438)
T KOG2543|consen 79 KSQL 82 (438)
T ss_pred Hhcc
Confidence 9873
No 486
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.62 E-value=9.6e-05 Score=55.95 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.-++.+...+.. .++.++|++|+|||||++.+.+..
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345666666666 999999999999999999999874
No 487
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.61 E-value=6.6e-05 Score=61.28 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHhhcC-------CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN-------AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~-------~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.++..+++...+... +.+-+.||+|.||||||++|++..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 46899999999998888642 899999999999999999999976
No 488
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.61 E-value=4.8e-05 Score=60.79 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 044827 148 AIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
++++|+||||+||||+++.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999865
No 489
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.60 E-value=0.00052 Score=55.28 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=40.6
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccc-cC--CCcceEEEEEEeccccCHHHHHHHHHHHCCC
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFC-YG--GHNFDIVIWVVVSKELKLERIQEDIGKKIRL 205 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-~~--~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~ 205 (237)
+..|+++.|+|++|+|||||+..++.... +. .|.-...+|+.....++.. .+.++++.++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~-rl~~~~~~~~~ 79 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE-RLVQIAERFGL 79 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHH-HHHHHHHHhcc
Confidence 44569999999999999999999874431 11 1223457788766665543 44556666554
No 490
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.60 E-value=9.6e-05 Score=58.21 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.++.|+|++|+||||+++.+.+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999888763
No 491
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.60 E-value=0.00044 Score=56.90 Aligned_cols=93 Identities=20% Similarity=0.329 Sum_probs=56.0
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCCCC-----CcCCCCHH
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLPTD-----SWKNRSIE 216 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~~~-----~~~~~~~~ 216 (237)
-+-.|+.++|+|..|+|||||++.++...... +-++.+++-+.+... ..++.+++...-.+... ..+.+..+
T Consensus 65 pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 142 (274)
T cd01133 65 PYAKGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGA 142 (274)
T ss_pred CcccCCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHH
Confidence 34567999999999999999999999876321 124456666766543 33444444432222110 11222222
Q ss_pred H-----HHHHHHHHhh---cCCcEEEecC
Q 044827 217 N-----EARDIYNILR---KKKFLLLLDD 237 (237)
Q Consensus 217 ~-----~~~~l~~~l~---~~~~LlvLDd 237 (237)
+ ....+++++. ++..|+++||
T Consensus 143 r~~~~~~a~~~AEyfr~~~g~~Vl~~~Ds 171 (274)
T cd01133 143 RARVALTGLTMAEYFRDEEGQDVLLFIDN 171 (274)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 2 2345677773 7789999997
No 492
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.59 E-value=0.00016 Score=55.64 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=25.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+.+|.|+|++|+||||+++.+++..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456899999999999999999999877
No 493
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.59 E-value=0.00093 Score=53.48 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=54.1
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC----cceEEEEEEeccccCHHHHHHHHHHHCCCCCCC-------cC
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH----NFDIVIWVVVSKELKLERIQEDIGKKIRLPTDS-------WK 211 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~----~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~-------~~ 211 (237)
-+..++++.|.|++|+|||+|+..++... ...+ .-...+|+.....++... +..+...++..... ..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~ 92 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPER-LVQLAVRFGLDPEEVLDNIYVAR 92 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHH-HHHHHHHhccchhhhhccEEEEe
Confidence 35556999999999999999999887654 1111 113456776655555543 34555554432110 01
Q ss_pred CCCHHHHHHHHHHHhh----cCCcEEEecC
Q 044827 212 NRSIENEARDIYNILR----KKKFLLLLDD 237 (237)
Q Consensus 212 ~~~~~~~~~~l~~~l~----~~~~LlvLDd 237 (237)
..+.++....+..... .+..++|+|.
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~lvVIDs 122 (226)
T cd01393 93 PYNGEQQLEIVEELERIMSSGRVDLVVVDS 122 (226)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeeEEEEcC
Confidence 1234444444444432 3667899983
No 494
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.59 E-value=0.0013 Score=60.54 Aligned_cols=45 Identities=36% Similarity=0.424 Sum_probs=37.0
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
+.++|....+..+...+... ..+.|+|++|+||||||+.+++...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 34688888888777777544 7899999999999999999998763
No 495
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.58 E-value=5.4e-05 Score=62.93 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.+|||.|++|+|||||++.+.+...
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999987763
No 496
>PRK04195 replication factor C large subunit; Provisional
Probab=97.58 E-value=0.00034 Score=62.63 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHhhc------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAE------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+..++.. ...+.|+||+|+||||+++.+++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999888888888763 3789999999999999999999976
No 497
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.57 E-value=6.4e-05 Score=58.94 Aligned_cols=24 Identities=46% Similarity=0.710 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
+|+|.|++|+|||||++.|.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999873
No 498
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0017 Score=59.41 Aligned_cols=42 Identities=36% Similarity=0.525 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHHhh--------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 130 IVGQQATFQKVLNCLA--------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~--------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
=||-+...+.|...|. .|.++++|||+|+|||+|++.|+.-.
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 4898888888888774 34899999999999999999999865
No 499
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.53 E-value=6e-05 Score=70.81 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHhhcC-CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 142 NCLAEN-AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 142 ~~l~~~-~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
..+..+ ++++|+||||+|||||++.+.+.
T Consensus 316 i~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 316 LNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 334444 89999999999999999999887
No 500
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.52 E-value=0.00017 Score=62.16 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=35.4
Q ss_pred CcccchHHHHHHHHHHhhc---------------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAE---------------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~---------------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.|.+..++.+...+.. ..-+.|+||+|+|||||++.+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 3578888888888776532 2458999999999999999999966
Done!