Query 044827
Match_columns 237
No_of_seqs 202 out of 2949
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.7 6.9E-16 2.4E-20 138.2 12.2 108 129-237 129-251 (549)
2 4g1u_C Hemin import ATP-bindin 99.5 4.5E-14 1.5E-18 115.1 5.2 106 130-237 20-173 (266)
3 2pcj_A ABC transporter, lipopr 99.4 2.2E-14 7.5E-19 114.1 2.7 107 131-237 14-166 (224)
4 3rlf_A Maltose/maltodextrin im 99.4 2.9E-14 9.8E-19 121.3 2.5 108 130-237 12-159 (381)
5 3fvq_A Fe(3+) IONS import ATP- 99.4 3.1E-14 1E-18 120.3 1.6 108 130-237 13-164 (359)
6 1z47_A CYSA, putative ABC-tran 99.4 6.7E-14 2.3E-18 118.1 3.2 106 132-237 26-171 (355)
7 2olj_A Amino acid ABC transpor 99.4 4.7E-14 1.6E-18 114.7 1.9 105 131-237 34-185 (263)
8 3gfo_A Cobalt import ATP-bindi 99.4 9.1E-14 3.1E-18 113.7 3.6 103 135-237 22-169 (275)
9 1sgw_A Putative ABC transporte 99.4 9.9E-14 3.4E-18 109.4 3.6 104 131-237 20-159 (214)
10 3tif_A Uncharacterized ABC tra 99.4 1.3E-13 4.3E-18 110.5 3.9 100 136-237 20-171 (235)
11 2it1_A 362AA long hypothetical 99.4 1E-13 3.4E-18 117.4 3.4 107 131-237 13-159 (362)
12 1b0u_A Histidine permease; ABC 99.4 5E-14 1.7E-18 114.6 1.1 107 131-237 16-179 (262)
13 2nq2_C Hypothetical ABC transp 99.4 6E-14 2.1E-18 113.6 1.5 103 133-237 17-154 (253)
14 1vpl_A ABC transporter, ATP-bi 99.4 1E-13 3.5E-18 112.3 2.5 105 131-237 25-172 (256)
15 3tui_C Methionine import ATP-b 99.4 1.5E-13 5.2E-18 116.1 3.6 103 135-237 42-189 (366)
16 2yyz_A Sugar ABC transporter, 99.4 8.2E-14 2.8E-18 117.9 1.5 107 131-237 13-159 (359)
17 1ji0_A ABC transporter; ATP bi 99.4 1.7E-13 5.8E-18 110.1 3.3 105 131-237 16-165 (240)
18 1g6h_A High-affinity branched- 99.4 3.7E-14 1.2E-18 115.2 -1.0 105 131-237 17-179 (257)
19 1mv5_A LMRA, multidrug resista 99.4 1.2E-13 4E-18 111.3 1.9 103 135-237 16-165 (243)
20 3d31_A Sulfate/molybdate ABC t 99.4 4.7E-14 1.6E-18 118.9 -0.7 106 131-237 11-153 (348)
21 1oxx_K GLCV, glucose, ABC tran 99.4 2.3E-13 7.8E-18 115.1 3.4 107 131-237 13-166 (353)
22 2ihy_A ABC transporter, ATP-bi 99.4 1.2E-13 4E-18 113.3 1.6 106 130-237 30-187 (279)
23 1g29_1 MALK, maltose transport 99.3 2.9E-13 1E-17 115.1 3.8 107 131-237 13-165 (372)
24 1vt4_I APAF-1 related killer D 99.3 1.3E-12 4.3E-17 122.4 7.7 107 130-237 130-252 (1221)
25 1v43_A Sugar-binding transport 99.3 9.6E-14 3.3E-18 118.0 0.1 107 131-237 21-167 (372)
26 2cbz_A Multidrug resistance-as 99.3 1.5E-13 5E-18 110.2 1.0 101 135-237 19-153 (237)
27 2onk_A Molybdate/tungstate ABC 99.3 1.1E-13 3.7E-18 111.2 -0.7 100 137-237 15-152 (240)
28 2pjz_A Hypothetical protein ST 99.3 3E-13 1E-17 110.0 1.4 101 134-237 18-154 (263)
29 2pze_A Cystic fibrosis transme 99.3 3.7E-13 1.3E-17 107.4 1.6 101 135-237 22-156 (229)
30 2yz2_A Putative ABC transporte 99.3 1.5E-12 5.2E-17 106.1 5.1 103 135-237 21-164 (266)
31 2d2e_A SUFC protein; ABC-ATPas 99.3 1.2E-13 4.2E-18 111.6 -1.5 107 131-237 13-169 (250)
32 2ff7_A Alpha-hemolysin translo 99.3 6.1E-13 2.1E-17 107.3 2.7 101 135-237 23-171 (247)
33 3sfz_A APAF-1, apoptotic pepti 99.3 7.2E-12 2.5E-16 121.1 10.5 110 128-237 124-244 (1249)
34 2zu0_C Probable ATP-dependent 99.3 7.1E-13 2.4E-17 108.1 2.1 108 130-237 29-190 (267)
35 2qi9_C Vitamin B12 import ATP- 99.3 1.4E-12 4.6E-17 105.3 3.4 99 136-237 15-159 (249)
36 1z6t_A APAF-1, apoptotic prote 99.3 1.5E-11 5.1E-16 110.8 10.0 108 128-237 124-244 (591)
37 3gd7_A Fusion complex of cysti 99.2 2E-12 6.7E-17 110.6 2.6 105 132-237 32-181 (390)
38 3nh6_A ATP-binding cassette SU 99.2 9.4E-13 3.2E-17 109.1 0.5 102 134-237 67-216 (306)
39 2ixe_A Antigen peptide transpo 99.2 2.8E-12 9.7E-17 104.7 2.3 102 134-237 32-182 (271)
40 2ghi_A Transport protein; mult 99.2 1.4E-11 4.6E-16 100.1 4.8 99 136-237 35-181 (260)
41 3b5x_A Lipid A export ATP-bind 99.2 1.4E-11 4.9E-16 110.9 5.2 104 134-237 356-506 (582)
42 2bbs_A Cystic fibrosis transme 99.2 4.6E-12 1.6E-16 104.3 1.8 101 135-237 52-185 (290)
43 1yqt_A RNAse L inhibitor; ATP- 99.2 1.1E-11 3.9E-16 110.4 3.3 105 131-237 31-184 (538)
44 3bk7_A ABC transporter ATP-bin 99.1 7.6E-11 2.6E-15 106.3 8.5 94 144-237 379-497 (607)
45 3j16_B RLI1P; ribosome recycli 99.1 1.2E-10 4E-15 105.0 9.1 95 143-237 99-247 (608)
46 1yqt_A RNAse L inhibitor; ATP- 99.1 6.1E-11 2.1E-15 105.7 7.2 94 144-237 309-427 (538)
47 3ozx_A RNAse L inhibitor; ATP 99.1 9.6E-11 3.3E-15 104.3 7.5 93 145-237 23-164 (538)
48 3bk7_A ABC transporter ATP-bin 99.1 1.8E-11 6.1E-16 110.4 2.6 106 130-237 100-254 (607)
49 3ozx_A RNAse L inhibitor; ATP 99.1 1E-10 3.6E-15 104.0 6.9 94 144-237 291-411 (538)
50 3b85_A Phosphate starvation-in 99.1 1.9E-11 6.6E-16 95.9 1.1 104 128-237 7-130 (208)
51 3j16_B RLI1P; ribosome recycli 99.0 4E-10 1.4E-14 101.5 8.7 100 136-237 362-493 (608)
52 3b60_A Lipid A export ATP-bind 99.0 1.4E-11 4.9E-16 110.9 -1.1 102 134-237 356-506 (582)
53 3qf4_A ABC transporter, ATP-bi 99.0 6.6E-11 2.2E-15 106.6 2.9 102 134-237 356-505 (587)
54 2yl4_A ATP-binding cassette SU 99.0 2.3E-11 7.8E-16 109.9 -0.1 101 135-237 358-509 (595)
55 4a82_A Cystic fibrosis transme 99.0 1.9E-11 6.4E-16 110.0 -1.6 101 135-237 355-503 (578)
56 2iw3_A Elongation factor 3A; a 99.0 9.6E-11 3.3E-15 109.9 2.2 42 135-176 687-728 (986)
57 4gp7_A Metallophosphoesterase; 99.0 1.3E-10 4.5E-15 88.3 2.3 86 142-237 4-109 (171)
58 3qf4_B Uncharacterized ABC tra 99.0 1.8E-11 6.3E-16 110.5 -3.3 104 134-237 368-517 (598)
59 2iw3_A Elongation factor 3A; a 98.9 2.2E-10 7.7E-15 107.4 2.4 105 130-237 444-574 (986)
60 2qby_A CDC6 homolog 1, cell di 98.9 1.3E-08 4.4E-13 86.3 11.1 109 128-237 20-136 (386)
61 3qfl_A MLA10; coiled-coil, (CC 98.8 3.1E-09 1.1E-13 75.2 5.2 62 3-71 15-83 (115)
62 4f4c_A Multidrug resistance pr 98.8 1.2E-09 4.3E-14 106.4 4.0 100 135-237 432-580 (1321)
63 1w5s_A Origin recognition comp 98.8 2.3E-08 7.8E-13 85.7 10.6 109 128-237 22-146 (412)
64 1htw_A HI0065; nucleotide-bind 98.8 3.5E-09 1.2E-13 79.4 4.8 47 130-177 16-62 (158)
65 3ux8_A Excinuclease ABC, A sub 98.8 1.5E-09 5.3E-14 99.2 3.4 31 134-164 31-61 (670)
66 4f4c_A Multidrug resistance pr 98.8 8.1E-10 2.8E-14 107.8 1.0 101 135-237 1093-1243(1321)
67 2qen_A Walker-type ATPase; unk 98.8 4E-08 1.4E-12 82.1 11.1 102 128-237 12-136 (350)
68 2pt7_A CAG-ALFA; ATPase, prote 98.8 9.8E-09 3.3E-13 86.0 7.2 89 136-237 160-248 (330)
69 1fnn_A CDC6P, cell division co 98.8 9.4E-08 3.2E-12 81.1 13.4 107 128-237 17-133 (389)
70 3g5u_A MCG1178, multidrug resi 98.8 2.2E-09 7.5E-14 104.5 3.3 103 135-237 404-552 (1284)
71 2qby_B CDC6 homolog 3, cell di 98.7 2.4E-08 8.3E-13 84.8 8.7 109 128-237 20-141 (384)
72 3g5u_A MCG1178, multidrug resi 98.7 1.9E-09 6.6E-14 104.9 1.7 101 135-237 1047-1197(1284)
73 2v1u_A Cell division control p 98.7 7.2E-08 2.5E-12 81.7 10.9 109 128-237 19-138 (387)
74 2npi_A Protein CLP1; CLP1-PCF1 98.7 1.2E-09 4.2E-14 95.3 -0.2 104 134-237 125-267 (460)
75 1tq4_A IIGP1, interferon-induc 98.7 4.3E-09 1.5E-13 90.5 2.4 103 134-236 36-191 (413)
76 1ye8_A Protein THEP1, hypothet 98.7 6.9E-09 2.4E-13 79.3 2.9 23 149-171 2-24 (178)
77 3ux8_A Excinuclease ABC, A sub 98.6 1.8E-08 6.2E-13 92.1 3.9 34 135-168 336-369 (670)
78 2eyu_A Twitching motility prot 98.6 6.8E-08 2.3E-12 78.2 6.5 87 135-237 15-106 (261)
79 1z6g_A Guanylate kinase; struc 98.5 5.4E-08 1.8E-12 76.7 3.9 38 134-171 10-47 (218)
80 4a74_A DNA repair and recombin 98.5 3.3E-07 1.1E-11 72.1 8.1 70 136-206 13-86 (231)
81 2fna_A Conserved hypothetical 98.5 8.6E-07 2.9E-11 74.1 11.1 42 128-171 13-54 (357)
82 2obl_A ESCN; ATPase, hydrolase 98.5 1.1E-07 3.9E-12 80.0 4.8 47 127-174 51-98 (347)
83 2jeo_A Uridine-cytidine kinase 98.5 7.8E-08 2.7E-12 77.0 3.4 41 131-171 9-49 (245)
84 3b9q_A Chloroplast SRP recepto 98.4 2.3E-07 7.9E-12 76.7 6.1 34 144-177 97-130 (302)
85 2og2_A Putative signal recogni 98.4 4.7E-07 1.6E-11 76.5 7.7 34 144-177 154-187 (359)
86 2w0m_A SSO2452; RECA, SSPF, un 98.4 1E-06 3.5E-11 69.2 8.9 39 135-173 10-49 (235)
87 2cvh_A DNA repair and recombin 98.4 1.3E-06 4.4E-11 68.2 9.1 96 135-237 7-113 (220)
88 1cr0_A DNA primase/helicase; R 98.4 8E-07 2.7E-11 73.0 8.2 42 135-176 23-64 (296)
89 2v9p_A Replication protein E1; 98.4 2.4E-07 8.3E-12 76.5 4.8 38 134-171 113-150 (305)
90 2dpy_A FLII, flagellum-specifi 98.4 2.9E-07 9.8E-12 79.9 5.3 48 128-176 138-186 (438)
91 3ec2_A DNA replication protein 98.4 8.1E-07 2.8E-11 67.5 7.3 44 133-176 19-67 (180)
92 1njg_A DNA polymerase III subu 98.3 2E-06 6.8E-11 67.5 8.6 44 128-171 23-69 (250)
93 1znw_A Guanylate kinase, GMP k 98.3 3.1E-07 1.1E-11 71.6 3.7 30 142-171 15-44 (207)
94 2kjq_A DNAA-related protein; s 98.3 8.8E-07 3E-11 65.5 5.7 28 146-173 35-62 (149)
95 2gza_A Type IV secretion syste 98.3 5.1E-07 1.7E-11 76.5 4.4 40 138-177 166-205 (361)
96 2vf7_A UVRA2, excinuclease ABC 98.3 1.4E-07 4.9E-12 87.6 0.7 34 136-169 512-546 (842)
97 3pih_A Uvrabc system protein A 98.3 2.9E-07 1E-11 86.2 2.7 30 135-164 598-627 (916)
98 1tf7_A KAIC; homohexamer, hexa 98.3 3.9E-06 1.3E-10 74.6 9.7 89 142-236 276-378 (525)
99 3jvv_A Twitching mobility prot 98.3 2.5E-06 8.4E-11 72.1 8.0 42 131-174 109-150 (356)
100 3e70_C DPA, signal recognition 98.3 4.6E-06 1.6E-10 69.6 9.6 33 145-177 127-159 (328)
101 1n0w_A DNA repair protein RAD5 98.2 3.6E-06 1.2E-10 66.7 8.6 101 136-237 12-127 (243)
102 4aby_A DNA repair protein RECN 98.2 1.3E-06 4.6E-11 75.1 6.3 35 136-171 50-84 (415)
103 3tr0_A Guanylate kinase, GMP k 98.2 6.4E-07 2.2E-11 69.3 3.8 28 144-171 4-31 (205)
104 1pzn_A RAD51, DNA repair and r 98.2 3.3E-06 1.1E-10 71.2 8.1 101 136-237 119-239 (349)
105 2qag_B Septin-6, protein NEDD5 98.2 6.8E-07 2.3E-11 77.0 3.7 41 130-171 24-66 (427)
106 2qm8_A GTPase/ATPase; G protei 98.2 9.5E-07 3.3E-11 74.1 4.5 47 131-177 39-85 (337)
107 1ewq_A DNA mismatch repair pro 98.2 1.1E-06 3.8E-11 81.1 5.2 82 147-237 576-663 (765)
108 1sq5_A Pantothenate kinase; P- 98.2 1.6E-06 5.4E-11 71.9 5.6 33 145-177 78-112 (308)
109 1in4_A RUVB, holliday junction 98.2 8.7E-07 3E-11 74.2 4.1 44 128-171 25-75 (334)
110 3aez_A Pantothenate kinase; tr 98.2 1.5E-06 5.1E-11 72.1 5.1 92 144-237 87-202 (312)
111 2chg_A Replication factor C sm 98.2 8E-06 2.7E-10 63.2 8.9 44 128-171 17-62 (226)
112 3lnc_A Guanylate kinase, GMP k 98.1 5.1E-07 1.7E-11 71.5 1.6 37 135-171 15-52 (231)
113 2px0_A Flagellar biosynthesis 98.1 1.1E-05 3.6E-10 66.5 9.5 85 146-236 104-189 (296)
114 2r6f_A Excinuclease ABC subuni 98.1 7.7E-07 2.6E-11 83.3 2.5 32 136-167 639-670 (972)
115 3c8u_A Fructokinase; YP_612366 98.1 9.9E-07 3.4E-11 68.7 2.7 38 136-173 7-48 (208)
116 1zp6_A Hypothetical protein AT 98.1 1.2E-06 4.2E-11 66.9 3.2 28 143-170 5-32 (191)
117 3te6_A Regulatory protein SIR3 98.1 1.2E-05 4.1E-10 66.7 9.2 107 130-237 22-140 (318)
118 1s96_A Guanylate kinase, GMP k 98.1 1.7E-06 6E-11 68.1 3.9 30 143-172 12-41 (219)
119 2yhs_A FTSY, cell division pro 98.1 1.8E-06 6.2E-11 75.5 4.3 34 144-177 290-323 (503)
120 3a00_A Guanylate kinase, GMP k 98.1 1.9E-06 6.4E-11 65.9 3.9 25 148-172 2-26 (186)
121 1vma_A Cell division protein F 98.1 5.9E-06 2E-10 68.3 7.1 86 146-236 103-193 (306)
122 2ygr_A Uvrabc system protein A 98.1 8.6E-07 2.9E-11 83.2 2.2 32 136-167 657-688 (993)
123 3b9p_A CG5977-PA, isoform A; A 98.1 2.5E-05 8.5E-10 63.9 10.5 44 128-171 21-78 (297)
124 2i3b_A HCR-ntpase, human cance 98.1 1.4E-06 4.8E-11 67.0 2.7 29 147-176 1-29 (189)
125 3thx_A DNA mismatch repair pro 98.1 1.9E-06 6.6E-11 81.0 4.0 29 139-167 654-682 (934)
126 1lvg_A Guanylate kinase, GMP k 98.0 2.1E-06 7.1E-11 66.5 3.1 26 146-171 3-28 (198)
127 3h4m_A Proteasome-activating n 98.0 1.4E-05 4.8E-10 64.9 8.2 44 128-171 17-75 (285)
128 3nwj_A ATSK2; P loop, shikimat 98.0 2.9E-06 9.9E-11 68.1 3.9 40 132-171 30-72 (250)
129 3lda_A DNA repair protein RAD5 98.0 2E-05 6.7E-10 67.5 9.2 102 135-237 165-281 (400)
130 1rj9_A FTSY, signal recognitio 98.0 3.4E-06 1.2E-10 69.7 4.3 31 147-177 102-132 (304)
131 3sop_A Neuronal-specific septi 98.0 2.4E-06 8.3E-11 69.4 3.0 28 149-176 4-31 (270)
132 3asz_A Uridine kinase; cytidin 98.0 2.8E-06 9.4E-11 66.1 3.3 27 145-171 4-30 (211)
133 3vaa_A Shikimate kinase, SK; s 98.0 3.6E-06 1.2E-10 65.0 3.8 38 134-171 12-49 (199)
134 2ehv_A Hypothetical protein PH 98.0 3.1E-06 1.1E-10 67.3 3.5 26 143-168 26-51 (251)
135 2oap_1 GSPE-2, type II secreti 98.0 5.7E-06 2E-10 73.1 5.5 43 134-176 247-289 (511)
136 1kgd_A CASK, peripheral plasma 98.0 4E-06 1.4E-10 63.7 3.8 26 146-171 4-29 (180)
137 1nlf_A Regulatory protein REPA 98.0 2.6E-05 8.8E-10 63.4 8.6 28 144-171 27-54 (279)
138 3uie_A Adenylyl-sulfate kinase 98.0 4.7E-06 1.6E-10 64.4 3.9 41 136-177 14-54 (200)
139 1lv7_A FTSH; alpha/beta domain 98.0 5.2E-05 1.8E-09 60.7 10.1 44 128-171 12-69 (257)
140 2j41_A Guanylate kinase; GMP, 97.9 5.2E-06 1.8E-10 64.1 3.7 28 144-171 3-30 (207)
141 1tf7_A KAIC; homohexamer, hexa 97.9 3.8E-06 1.3E-10 74.6 3.3 47 130-176 21-70 (525)
142 3euj_A Chromosome partition pr 97.9 4.9E-06 1.7E-10 72.8 3.8 41 136-177 19-59 (483)
143 3tqc_A Pantothenate kinase; bi 97.9 8.1E-06 2.8E-10 67.9 4.9 43 130-172 69-117 (321)
144 4eun_A Thermoresistant glucoki 97.9 5.7E-06 1.9E-10 63.9 3.8 28 144-171 26-53 (200)
145 1jbk_A CLPB protein; beta barr 97.9 1.4E-05 4.9E-10 60.2 5.8 44 128-171 22-67 (195)
146 2rcn_A Probable GTPase ENGC; Y 97.9 1.2E-05 4.2E-10 67.7 5.4 40 137-177 206-246 (358)
147 1sxj_C Activator 1 40 kDa subu 97.9 1.1E-05 3.8E-10 67.5 5.1 44 128-171 25-70 (340)
148 1p9r_A General secretion pathw 97.9 1E-05 3.5E-10 69.7 4.8 42 134-177 156-197 (418)
149 3cf0_A Transitional endoplasmi 97.9 0.00013 4.3E-09 60.0 11.2 44 128-171 15-73 (301)
150 3hr8_A Protein RECA; alpha and 97.9 0.00022 7.7E-09 60.0 12.7 95 135-237 47-147 (356)
151 1sxj_B Activator 1 37 kDa subu 97.9 2.6E-05 8.7E-10 64.3 6.8 44 128-171 21-66 (323)
152 3thx_B DNA mismatch repair pro 97.8 6.6E-07 2.3E-11 83.9 -3.5 27 144-170 670-696 (918)
153 1rz3_A Hypothetical protein rb 97.8 1.8E-05 6.3E-10 61.1 5.3 40 134-173 4-48 (201)
154 2o8b_B DNA mismatch repair pro 97.8 8.9E-07 3E-11 84.2 -2.7 81 147-237 789-876 (1022)
155 3tau_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 62.8 3.9 28 145-172 6-33 (208)
156 2qz4_A Paraplegin; AAA+, SPG7, 97.8 4.2E-05 1.4E-09 61.1 7.4 44 128-171 6-63 (262)
157 1lw7_A Transcriptional regulat 97.8 4.4E-06 1.5E-10 70.8 1.6 37 139-175 160-198 (365)
158 2bdt_A BH3686; alpha-beta prot 97.8 9E-06 3.1E-10 62.1 3.2 23 148-170 3-25 (189)
159 2p65_A Hypothetical protein PF 97.8 2E-05 6.8E-10 59.3 5.1 44 128-171 22-67 (187)
160 1u0l_A Probable GTPase ENGC; p 97.8 1.3E-05 4.5E-10 66.1 4.2 35 144-178 166-200 (301)
161 2x8a_A Nuclear valosin-contain 97.8 5.9E-06 2E-10 67.2 2.0 22 150-171 47-68 (274)
162 2ce7_A Cell division protein F 97.8 9.2E-05 3.1E-09 64.8 9.6 87 128-237 16-116 (476)
163 1svm_A Large T antigen; AAA+ f 97.8 1.9E-05 6.4E-10 67.1 5.0 38 134-171 156-193 (377)
164 3k1j_A LON protease, ATP-depen 97.8 2.1E-05 7.3E-10 71.0 5.6 46 128-173 41-86 (604)
165 2bbw_A Adenylate kinase 4, AK4 97.8 6.1E-06 2.1E-10 65.9 1.7 25 147-171 27-54 (246)
166 1kag_A SKI, shikimate kinase I 97.8 1.2E-05 4.2E-10 60.3 3.2 25 147-171 4-28 (173)
167 2ewv_A Twitching motility prot 97.8 1.1E-05 3.7E-10 68.6 3.0 40 136-177 127-167 (372)
168 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.0003 1E-08 58.4 11.7 44 128-171 12-69 (322)
169 3ice_A Transcription terminati 97.8 2E-05 6.7E-10 66.8 4.4 95 139-237 166-269 (422)
170 1knq_A Gluconate kinase; ALFA/ 97.8 1.6E-05 5.4E-10 59.9 3.4 26 146-171 7-32 (175)
171 3pvs_A Replication-associated 97.7 8E-05 2.7E-09 64.8 8.3 44 128-171 26-74 (447)
172 2zr9_A Protein RECA, recombina 97.7 0.00032 1.1E-08 59.0 11.6 94 135-237 47-147 (349)
173 4e22_A Cytidylate kinase; P-lo 97.7 9E-06 3.1E-10 65.3 2.0 24 145-168 25-48 (252)
174 2yv5_A YJEQ protein; hydrolase 97.7 2.7E-05 9.2E-10 64.2 4.9 34 144-178 162-195 (302)
175 1wb9_A DNA mismatch repair pro 97.7 2.5E-05 8.6E-10 72.5 4.5 27 145-171 605-631 (800)
176 1t9h_A YLOQ, probable GTPase E 97.7 8.6E-06 2.9E-10 67.3 1.2 34 144-177 170-203 (307)
177 1ls1_A Signal recognition part 97.7 0.00012 4.3E-09 60.0 8.1 89 146-237 97-188 (295)
178 3d8b_A Fidgetin-like protein 1 97.7 0.00022 7.6E-09 60.1 9.8 44 128-171 84-141 (357)
179 3ney_A 55 kDa erythrocyte memb 97.7 3.1E-05 1.1E-09 59.8 3.8 27 145-171 17-43 (197)
180 1sxj_E Activator 1 40 kDa subu 97.6 4.1E-05 1.4E-09 64.1 4.9 43 128-170 14-59 (354)
181 2f1r_A Molybdopterin-guanine d 97.6 9.2E-06 3.1E-10 61.4 0.6 27 148-174 3-29 (171)
182 1ixz_A ATP-dependent metallopr 97.6 1.6E-05 5.6E-10 63.6 2.1 23 149-171 51-73 (254)
183 3n70_A Transport activator; si 97.6 7E-05 2.4E-09 54.7 5.3 42 130-171 3-48 (145)
184 4fcw_A Chaperone protein CLPB; 97.6 4.5E-05 1.5E-09 62.6 4.6 45 129-173 18-73 (311)
185 2vp4_A Deoxynucleoside kinase; 97.6 2.3E-05 8E-10 61.9 2.5 26 145-170 18-43 (230)
186 1nij_A Hypothetical protein YJ 97.6 3.5E-05 1.2E-09 64.0 3.5 24 148-171 5-28 (318)
187 1jjv_A Dephospho-COA kinase; P 97.6 3.6E-05 1.2E-09 59.5 3.4 21 149-169 4-24 (206)
188 1qhl_A Protein (cell division 97.6 4.6E-06 1.6E-10 65.9 -1.8 29 148-176 28-56 (227)
189 2qp9_X Vacuolar protein sortin 97.6 0.00013 4.6E-09 61.4 7.1 44 128-171 51-108 (355)
190 1cke_A CK, MSSA, protein (cyti 97.6 3.8E-05 1.3E-09 60.2 3.4 25 147-171 5-29 (227)
191 2if2_A Dephospho-COA kinase; a 97.6 3.6E-05 1.2E-09 59.3 3.2 21 149-169 3-23 (204)
192 4b4t_L 26S protease subunit RP 97.6 0.00037 1.2E-08 60.2 9.7 43 129-171 182-239 (437)
193 3eie_A Vacuolar protein sortin 97.6 0.0003 1E-08 58.3 9.0 44 128-171 18-75 (322)
194 1iy2_A ATP-dependent metallopr 97.6 2.2E-05 7.7E-10 63.7 2.1 23 149-171 75-97 (278)
195 2qt1_A Nicotinamide riboside k 97.6 3.7E-05 1.3E-09 59.5 3.2 28 144-171 18-45 (207)
196 3kta_A Chromosome segregation 97.6 4.8E-05 1.6E-09 57.5 3.7 24 148-171 27-50 (182)
197 4b4t_J 26S protease regulatory 97.6 0.00029 1E-08 60.1 8.9 43 129-171 149-206 (405)
198 4b4t_M 26S protease regulatory 97.6 0.00034 1.2E-08 60.4 9.3 43 129-171 182-239 (434)
199 3vfd_A Spastin; ATPase, microt 97.5 0.00026 8.8E-09 60.3 8.4 44 128-171 115-172 (389)
200 4b4t_K 26S protease regulatory 97.5 0.00034 1.2E-08 60.3 9.1 44 128-171 172-230 (428)
201 1v5w_A DMC1, meiotic recombina 97.5 0.00048 1.7E-08 57.7 9.8 70 136-206 110-183 (343)
202 1sxj_D Activator 1 41 kDa subu 97.5 6.4E-05 2.2E-09 62.8 4.2 44 128-171 37-82 (353)
203 2z4s_A Chromosomal replication 97.5 0.00016 5.5E-09 62.7 6.8 24 148-171 131-154 (440)
204 2p67_A LAO/AO transport system 97.5 7.1E-05 2.4E-09 62.8 4.3 42 131-172 40-81 (341)
205 3syl_A Protein CBBX; photosynt 97.5 0.0003 1E-08 57.6 8.0 43 129-171 32-91 (309)
206 2qnr_A Septin-2, protein NEDD5 97.5 2E-05 6.8E-10 65.0 0.7 34 131-170 8-41 (301)
207 3cr8_A Sulfate adenylyltranfer 97.5 8.2E-05 2.8E-09 66.3 4.6 33 144-176 366-398 (552)
208 4b4t_H 26S protease regulatory 97.5 0.00052 1.8E-08 59.5 9.4 43 129-171 210-267 (467)
209 1pui_A ENGB, probable GTP-bind 97.5 2.5E-05 8.7E-10 60.2 1.2 30 142-171 21-50 (210)
210 2ga8_A Hypothetical 39.9 kDa p 97.5 9.9E-05 3.4E-09 61.9 4.7 37 135-171 10-48 (359)
211 1oix_A RAS-related protein RAB 97.5 6.3E-05 2.2E-09 57.4 3.2 24 148-171 30-53 (191)
212 1sky_E F1-ATPase, F1-ATP synth 97.4 0.00054 1.8E-08 59.6 9.1 100 135-237 140-253 (473)
213 3uk6_A RUVB-like 2; hexameric 97.4 0.0003 1E-08 59.1 7.4 44 128-171 44-94 (368)
214 2qor_A Guanylate kinase; phosp 97.4 7.7E-05 2.6E-09 57.6 3.3 27 145-171 10-36 (204)
215 3t61_A Gluconokinase; PSI-biol 97.4 6.8E-05 2.3E-09 57.8 2.9 24 148-171 19-42 (202)
216 2f9l_A RAB11B, member RAS onco 97.4 8.1E-05 2.8E-09 57.0 3.4 23 149-171 7-29 (199)
217 2z43_A DNA repair and recombin 97.4 0.00069 2.4E-08 56.2 9.3 101 136-237 95-211 (324)
218 1ypw_A Transitional endoplasmi 97.4 0.00017 5.7E-09 67.3 6.0 43 129-171 205-262 (806)
219 1odf_A YGR205W, hypothetical 3 97.4 0.00016 5.5E-09 59.2 5.0 26 147-172 31-56 (290)
220 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.5E-09 54.9 3.5 24 148-171 2-25 (173)
221 3kl4_A SRP54, signal recogniti 97.4 0.00051 1.8E-08 59.3 8.2 27 147-173 97-123 (433)
222 3lw7_A Adenylate kinase relate 97.4 9.6E-05 3.3E-09 55.0 3.2 20 148-167 2-21 (179)
223 2pez_A Bifunctional 3'-phospho 97.4 0.00011 3.6E-09 55.5 3.5 26 146-171 4-29 (179)
224 1jr3_A DNA polymerase III subu 97.4 0.00019 6.5E-09 60.3 5.4 44 128-171 16-62 (373)
225 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 0.00025 8.7E-09 62.4 6.3 43 129-171 23-65 (500)
226 1iqp_A RFCS; clamp loader, ext 97.4 0.0002 6.8E-09 58.9 5.4 44 128-171 25-70 (327)
227 2zan_A Vacuolar protein sortin 97.4 0.00055 1.9E-08 59.4 8.3 44 128-171 134-191 (444)
228 4b4t_I 26S protease regulatory 97.3 0.00083 2.8E-08 57.7 9.0 43 129-171 183-240 (437)
229 2w58_A DNAI, primosome compone 97.3 0.00021 7.1E-09 54.9 4.9 37 135-171 36-78 (202)
230 2r44_A Uncharacterized protein 97.3 0.00014 4.8E-09 60.4 4.1 43 129-171 28-70 (331)
231 1d2n_A N-ethylmaleimide-sensit 97.3 0.00037 1.3E-08 56.2 6.5 24 148-171 65-88 (272)
232 1y63_A LMAJ004144AAA protein; 97.3 0.00012 4.2E-09 55.5 3.4 28 143-170 6-33 (184)
233 3io5_A Recombination and repai 97.3 0.00064 2.2E-08 56.2 7.6 86 144-236 26-118 (333)
234 1qhx_A CPT, protein (chloramph 97.3 0.00015 5E-09 54.5 3.5 25 147-171 3-27 (178)
235 2yvu_A Probable adenylyl-sulfa 97.3 0.00018 6E-09 54.6 4.0 27 146-172 12-38 (186)
236 1ofh_A ATP-dependent HSL prote 97.3 0.00027 9.1E-09 57.8 5.0 44 128-171 15-74 (310)
237 3pxg_A Negative regulator of g 97.3 0.00029 9.8E-09 61.6 5.4 44 128-171 180-225 (468)
238 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00017 5.9E-09 53.0 3.4 22 147-168 23-44 (149)
239 1u94_A RECA protein, recombina 97.3 0.0013 4.4E-08 55.4 9.1 95 135-237 49-149 (356)
240 3szr_A Interferon-induced GTP- 97.2 9.3E-05 3.2E-09 66.8 2.1 30 148-177 46-76 (608)
241 3bos_A Putative DNA replicatio 97.2 0.00041 1.4E-08 54.3 5.7 38 134-171 37-76 (242)
242 2ze6_A Isopentenyl transferase 97.2 0.00017 5.8E-09 57.8 3.4 23 149-171 3-25 (253)
243 1ly1_A Polynucleotide kinase; 97.2 0.00018 6.2E-09 53.9 3.4 22 148-169 3-24 (181)
244 2qag_C Septin-7; cell cycle, c 97.2 0.00017 5.8E-09 62.1 3.6 23 150-172 34-56 (418)
245 1w1w_A Structural maintenance 97.2 0.00019 6.6E-09 62.0 3.9 29 145-173 24-52 (430)
246 3hu3_A Transitional endoplasmi 97.2 0.0015 5E-08 57.4 9.5 43 129-171 205-262 (489)
247 1via_A Shikimate kinase; struc 97.2 0.00016 5.5E-09 54.3 3.0 23 149-171 6-28 (175)
248 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00075 2.6E-08 62.4 8.0 44 128-171 186-231 (758)
249 2jaq_A Deoxyguanosine kinase; 97.2 0.00019 6.7E-09 54.9 3.4 23 149-171 2-24 (205)
250 2r6a_A DNAB helicase, replicat 97.2 0.0011 3.9E-08 57.5 8.7 37 135-171 191-227 (454)
251 3pxi_A Negative regulator of g 97.2 0.00033 1.1E-08 64.8 5.5 44 128-171 180-225 (758)
252 2wji_A Ferrous iron transport 97.2 0.0002 6.9E-09 53.1 3.2 24 148-171 4-27 (165)
253 1m7g_A Adenylylsulfate kinase; 97.2 0.00033 1.1E-08 54.3 4.6 31 142-172 20-50 (211)
254 3dm5_A SRP54, signal recogniti 97.2 0.0016 5.5E-08 56.3 9.2 25 147-171 100-124 (443)
255 3cm0_A Adenylate kinase; ATP-b 97.2 0.00024 8.1E-09 53.7 3.4 25 147-171 4-28 (186)
256 2p5t_B PEZT; postsegregational 97.2 0.0003 1E-08 56.3 4.1 24 148-171 33-56 (253)
257 2ck3_D ATP synthase subunit be 97.2 0.0038 1.3E-07 54.2 11.1 94 142-237 148-261 (482)
258 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00052 1.8E-08 56.8 5.5 27 144-170 120-146 (331)
259 3trf_A Shikimate kinase, SK; a 97.1 0.00026 8.9E-09 53.5 3.5 25 147-171 5-29 (185)
260 1xp8_A RECA protein, recombina 97.1 0.0019 6.5E-08 54.6 9.1 94 136-237 61-160 (366)
261 3pfi_A Holliday junction ATP-d 97.1 0.00029 1E-08 58.5 4.1 44 128-171 29-79 (338)
262 1hqc_A RUVB; extended AAA-ATPa 97.1 0.00032 1.1E-08 57.8 4.2 44 128-171 12-62 (324)
263 1gvn_B Zeta; postsegregational 97.1 0.00042 1.4E-08 56.6 4.8 24 148-171 34-57 (287)
264 1kht_A Adenylate kinase; phosp 97.1 0.00027 9.3E-09 53.4 3.4 25 147-171 3-27 (192)
265 3bh0_A DNAB-like replicative h 97.1 0.0022 7.7E-08 52.9 9.2 49 135-186 56-104 (315)
266 2chq_A Replication factor C sm 97.1 0.00042 1.4E-08 56.8 4.7 44 128-171 17-62 (319)
267 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 0.00028 9.5E-09 60.2 3.6 27 144-170 17-43 (392)
268 1sxj_A Activator 1 95 kDa subu 97.1 0.00055 1.9E-08 60.6 5.6 44 128-171 39-101 (516)
269 3hws_A ATP-dependent CLP prote 97.1 0.00051 1.7E-08 57.8 5.2 42 130-171 17-75 (363)
270 3m6a_A ATP-dependent protease 97.1 0.00016 5.5E-09 64.4 2.1 43 129-171 82-132 (543)
271 1uf9_A TT1252 protein; P-loop, 97.1 0.00029 9.9E-09 53.9 3.2 23 148-170 9-31 (203)
272 2wjg_A FEOB, ferrous iron tran 97.1 0.00033 1.1E-08 52.7 3.4 23 148-170 8-30 (188)
273 1nks_A Adenylate kinase; therm 97.1 0.00031 1.1E-08 53.2 3.2 23 149-171 3-25 (194)
274 1np6_A Molybdopterin-guanine d 97.1 0.00036 1.2E-08 52.7 3.5 24 148-171 7-30 (174)
275 2zej_A Dardarin, leucine-rich 97.1 0.0003 1E-08 53.1 3.1 22 149-170 4-25 (184)
276 2c95_A Adenylate kinase 1; tra 97.1 0.00049 1.7E-08 52.3 4.3 28 144-171 6-33 (196)
277 1zuh_A Shikimate kinase; alpha 97.1 0.00037 1.3E-08 51.8 3.5 24 148-171 8-31 (168)
278 1zu4_A FTSY; GTPase, signal re 97.0 0.00042 1.4E-08 57.5 4.0 30 145-174 103-132 (320)
279 2gj8_A MNME, tRNA modification 97.0 0.00033 1.1E-08 52.3 3.2 25 147-171 4-28 (172)
280 1vht_A Dephospho-COA kinase; s 97.0 0.00035 1.2E-08 54.3 3.4 22 148-169 5-26 (218)
281 2dr3_A UPF0273 protein PH0284; 97.0 0.00033 1.1E-08 55.3 3.2 35 137-171 12-47 (247)
282 1q3t_A Cytidylate kinase; nucl 97.0 0.00039 1.3E-08 54.9 3.7 26 146-171 15-40 (236)
283 2rhm_A Putative kinase; P-loop 97.0 0.00035 1.2E-08 53.0 3.2 25 147-171 5-29 (193)
284 2bwj_A Adenylate kinase 5; pho 97.0 0.00036 1.2E-08 53.2 3.2 28 144-171 9-36 (199)
285 3r20_A Cytidylate kinase; stru 97.0 0.00035 1.2E-08 55.3 3.2 25 147-171 9-33 (233)
286 2www_A Methylmalonic aciduria 97.0 0.00047 1.6E-08 57.9 4.1 26 147-172 74-99 (349)
287 4eaq_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 55.0 3.2 27 146-172 25-51 (229)
288 3iij_A Coilin-interacting nucl 97.0 0.00033 1.1E-08 52.8 2.9 26 146-171 10-35 (180)
289 2o5v_A DNA replication and rep 97.0 0.00037 1.3E-08 58.8 3.4 25 144-169 24-48 (359)
290 1gtv_A TMK, thymidylate kinase 97.0 0.00017 5.7E-09 55.8 1.2 23 149-171 2-24 (214)
291 1tev_A UMP-CMP kinase; ploop, 97.0 0.00044 1.5E-08 52.4 3.4 25 147-171 3-27 (196)
292 1ex7_A Guanylate kinase; subst 97.0 0.0004 1.4E-08 53.0 3.1 23 149-171 3-25 (186)
293 3u61_B DNA polymerase accessor 97.0 0.0008 2.8E-08 55.5 5.3 44 128-171 26-72 (324)
294 1j8m_F SRP54, signal recogniti 97.0 0.0025 8.4E-08 52.3 8.1 27 147-173 98-124 (297)
295 3qf7_A RAD50; ABC-ATPase, ATPa 97.0 0.00041 1.4E-08 58.7 3.4 21 148-168 24-44 (365)
296 2i1q_A DNA repair and recombin 97.0 0.0013 4.5E-08 54.3 6.3 101 136-237 86-212 (322)
297 3ake_A Cytidylate kinase; CMP 96.9 0.00048 1.6E-08 52.9 3.4 23 149-171 4-26 (208)
298 2iyv_A Shikimate kinase, SK; t 96.9 0.00039 1.3E-08 52.5 2.8 24 148-171 3-26 (184)
299 2bjv_A PSP operon transcriptio 96.9 0.001 3.6E-08 53.2 5.4 43 129-171 7-53 (265)
300 1e6c_A Shikimate kinase; phosp 96.9 0.00047 1.6E-08 51.3 3.1 24 148-171 3-26 (173)
301 3cf2_A TER ATPase, transitiona 96.9 0.0014 4.7E-08 60.8 6.8 24 148-171 239-262 (806)
302 3qks_A DNA double-strand break 96.9 0.00051 1.7E-08 53.1 3.4 21 148-168 24-44 (203)
303 2pt5_A Shikimate kinase, SK; a 96.9 0.00055 1.9E-08 50.7 3.4 23 149-171 2-24 (168)
304 3co5_A Putative two-component 96.9 0.0002 6.8E-09 52.1 0.9 43 129-171 5-51 (143)
305 3qkt_A DNA double-strand break 96.9 0.00045 1.6E-08 57.7 3.2 22 147-168 23-44 (339)
306 2ffh_A Protein (FFH); SRP54, s 96.9 0.0036 1.2E-07 53.8 8.9 28 146-173 97-124 (425)
307 2v54_A DTMP kinase, thymidylat 96.9 0.00065 2.2E-08 52.0 3.8 26 146-171 3-28 (204)
308 2grj_A Dephospho-COA kinase; T 96.9 0.00056 1.9E-08 52.5 3.4 23 148-170 13-35 (192)
309 1xjc_A MOBB protein homolog; s 96.9 0.00063 2.1E-08 51.1 3.5 24 148-171 5-28 (169)
310 2plr_A DTMP kinase, probable t 96.9 0.00057 1.9E-08 52.6 3.4 25 147-171 4-28 (213)
311 2r62_A Cell division protease 96.9 0.0003 1E-08 56.5 1.9 44 128-171 11-68 (268)
312 2pbr_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 51.7 3.4 23 149-171 2-24 (195)
313 2vli_A Antibiotic resistance p 96.9 0.0004 1.4E-08 52.2 2.4 25 147-171 5-29 (183)
314 2z0h_A DTMP kinase, thymidylat 96.9 0.00061 2.1E-08 51.8 3.4 23 149-171 2-24 (197)
315 3fb4_A Adenylate kinase; psych 96.9 0.00056 1.9E-08 53.0 3.2 23 149-171 2-24 (216)
316 1qf9_A UMP/CMP kinase, protein 96.9 0.00058 2E-08 51.6 3.2 24 148-171 7-30 (194)
317 2wwf_A Thymidilate kinase, put 96.9 0.00065 2.2E-08 52.3 3.5 26 146-171 9-34 (212)
318 1e69_A Chromosome segregation 96.9 0.00044 1.5E-08 57.4 2.6 22 148-169 25-46 (322)
319 1qvr_A CLPB protein; coiled co 96.8 0.00081 2.8E-08 63.1 4.6 44 128-171 170-215 (854)
320 1ukz_A Uridylate kinase; trans 96.8 0.00066 2.2E-08 52.1 3.3 24 148-171 16-39 (203)
321 1ega_A Protein (GTP-binding pr 96.8 0.00062 2.1E-08 55.9 3.4 24 148-171 9-32 (301)
322 2cdn_A Adenylate kinase; phosp 96.8 0.00068 2.3E-08 52.0 3.4 24 148-171 21-44 (201)
323 1uj2_A Uridine-cytidine kinase 96.8 0.00064 2.2E-08 54.2 3.4 24 148-171 23-46 (252)
324 1l8q_A Chromosomal replication 96.8 0.0018 6.2E-08 53.5 6.2 24 148-171 38-61 (324)
325 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0012 4.2E-08 58.0 5.4 44 128-171 31-88 (499)
326 3dl0_A Adenylate kinase; phosp 96.8 0.00066 2.3E-08 52.6 3.3 23 149-171 2-24 (216)
327 1nn5_A Similar to deoxythymidy 96.8 0.00074 2.5E-08 52.1 3.5 26 146-171 8-33 (215)
328 2xau_A PRE-mRNA-splicing facto 96.8 0.0022 7.4E-08 59.5 7.1 35 137-171 99-133 (773)
329 1udx_A The GTP-binding protein 96.8 0.00036 1.2E-08 60.0 1.8 34 138-171 148-181 (416)
330 3lxx_A GTPase IMAP family memb 96.8 0.00092 3.1E-08 52.7 3.9 25 148-172 30-54 (239)
331 1zd8_A GTP:AMP phosphotransfer 96.8 0.0007 2.4E-08 53.0 3.2 25 147-171 7-31 (227)
332 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00077 2.6E-08 54.1 3.4 25 147-171 4-28 (260)
333 1aky_A Adenylate kinase; ATP:A 96.8 0.00093 3.2E-08 52.0 3.8 25 147-171 4-28 (220)
334 2b8t_A Thymidine kinase; deoxy 96.7 0.00056 1.9E-08 53.8 2.2 26 146-171 11-36 (223)
335 1fx0_B ATP synthase beta chain 96.7 0.011 3.9E-07 51.5 10.5 94 142-237 160-274 (498)
336 1ojl_A Transcriptional regulat 96.7 0.0012 4.2E-08 54.2 4.3 43 129-171 3-49 (304)
337 3t15_A Ribulose bisphosphate c 96.7 0.0016 5.5E-08 53.2 4.9 24 148-171 37-60 (293)
338 1zak_A Adenylate kinase; ATP:A 96.7 0.0007 2.4E-08 52.8 2.6 24 148-171 6-29 (222)
339 1um8_A ATP-dependent CLP prote 96.7 0.0018 6E-08 54.8 5.2 24 148-171 73-96 (376)
340 3k53_A Ferrous iron transport 96.7 0.0009 3.1E-08 54.0 3.2 24 148-171 4-27 (271)
341 1mky_A Probable GTP-binding pr 96.7 0.0017 5.9E-08 56.2 5.1 41 131-171 151-204 (439)
342 2ged_A SR-beta, signal recogni 96.7 0.0011 3.7E-08 50.1 3.4 24 148-171 49-72 (193)
343 2f6r_A COA synthase, bifunctio 96.7 0.00096 3.3E-08 54.3 3.2 22 148-169 76-97 (281)
344 4a1f_A DNAB helicase, replicat 96.6 0.0066 2.3E-07 50.6 8.2 37 135-171 34-70 (338)
345 2gno_A DNA polymerase III, gam 96.6 0.006 2.1E-07 50.1 7.9 38 133-170 2-41 (305)
346 2dyk_A GTP-binding protein; GT 96.6 0.0012 4.2E-08 48.0 3.4 23 149-171 3-25 (161)
347 1z2a_A RAS-related protein RAB 96.6 0.0012 4.1E-08 48.4 3.4 23 149-171 7-29 (168)
348 2ce2_X GTPase HRAS; signaling 96.6 0.0011 3.9E-08 48.2 3.2 23 149-171 5-27 (166)
349 3umf_A Adenylate kinase; rossm 96.6 0.0012 4.1E-08 51.6 3.4 29 143-171 25-53 (217)
350 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4.2E-08 51.6 3.4 23 149-171 2-24 (223)
351 3tlx_A Adenylate kinase 2; str 96.6 0.0023 7.8E-08 50.8 5.0 26 146-171 28-53 (243)
352 2nzj_A GTP-binding protein REM 96.6 0.0013 4.3E-08 48.7 3.3 23 149-171 6-28 (175)
353 2q6t_A DNAB replication FORK h 96.6 0.016 5.3E-07 50.2 10.6 37 135-171 188-224 (444)
354 2qgz_A Helicase loader, putati 96.6 0.0022 7.4E-08 52.9 4.9 38 134-171 134-176 (308)
355 2erx_A GTP-binding protein DI- 96.6 0.0014 4.9E-08 48.1 3.4 23 149-171 5-27 (172)
356 1e4v_A Adenylate kinase; trans 96.6 0.0012 4.2E-08 51.1 3.2 23 149-171 2-24 (214)
357 3d3q_A TRNA delta(2)-isopenten 96.6 0.0013 4.3E-08 54.9 3.3 24 148-171 8-31 (340)
358 1a7j_A Phosphoribulokinase; tr 96.6 0.00065 2.2E-08 55.6 1.6 25 147-171 5-29 (290)
359 2wsm_A Hydrogenase expression/ 96.5 0.0017 5.7E-08 50.3 3.7 37 135-171 16-54 (221)
360 2qe7_A ATP synthase subunit al 96.5 0.015 5.1E-07 50.8 9.9 90 143-237 158-262 (502)
361 1u8z_A RAS-related protein RAL 96.5 0.0016 5.4E-08 47.6 3.4 23 149-171 6-28 (168)
362 1kao_A RAP2A; GTP-binding prot 96.5 0.0016 5.5E-08 47.5 3.4 23 149-171 5-27 (167)
363 1z08_A RAS-related protein RAB 96.5 0.0016 5.5E-08 47.8 3.4 23 149-171 8-30 (170)
364 3q72_A GTP-binding protein RAD 96.5 0.0012 4.1E-08 48.4 2.7 23 149-171 4-26 (166)
365 1z0j_A RAB-22, RAS-related pro 96.5 0.0017 5.7E-08 47.7 3.4 23 149-171 8-30 (170)
366 3q85_A GTP-binding protein REM 96.5 0.0016 5.4E-08 47.9 3.2 23 149-171 4-26 (169)
367 1fzq_A ADP-ribosylation factor 96.5 0.0012 4.2E-08 49.5 2.7 23 148-170 17-39 (181)
368 3be4_A Adenylate kinase; malar 96.5 0.0014 4.8E-08 51.0 3.0 24 148-171 6-29 (217)
369 1c1y_A RAS-related protein RAP 96.5 0.0017 5.8E-08 47.5 3.4 23 149-171 5-27 (167)
370 3sr0_A Adenylate kinase; phosp 96.5 0.0015 5.2E-08 50.6 3.2 23 149-171 2-24 (206)
371 3con_A GTPase NRAS; structural 96.5 0.0017 5.7E-08 48.9 3.4 24 148-171 22-45 (190)
372 1ky3_A GTP-binding protein YPT 96.5 0.0017 6E-08 48.1 3.4 24 148-171 9-32 (182)
373 1ek0_A Protein (GTP-binding pr 96.5 0.0018 6E-08 47.5 3.4 23 149-171 5-27 (170)
374 1m2o_B GTP-binding protein SAR 96.5 0.0016 5.4E-08 49.4 3.2 23 148-170 24-46 (190)
375 2lkc_A Translation initiation 96.5 0.0018 6E-08 48.0 3.4 25 147-171 8-32 (178)
376 3t1o_A Gliding protein MGLA; G 96.5 0.0017 5.9E-08 48.9 3.4 24 148-171 15-38 (198)
377 2hf9_A Probable hydrogenase ni 96.5 0.0028 9.5E-08 49.2 4.6 24 148-171 39-62 (226)
378 1g8p_A Magnesium-chelatase 38 96.5 0.0017 5.8E-08 53.9 3.5 44 128-171 24-69 (350)
379 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0019 6.4E-08 47.9 3.4 23 149-171 9-31 (177)
380 2fn4_A P23, RAS-related protei 96.5 0.0017 6E-08 48.1 3.2 24 148-171 10-33 (181)
381 1g41_A Heat shock protein HSLU 96.5 0.0033 1.1E-07 54.4 5.3 43 129-171 16-74 (444)
382 2c9o_A RUVB-like 1; hexameric 96.4 0.0035 1.2E-07 54.4 5.5 44 128-171 37-87 (456)
383 1ltq_A Polynucleotide kinase; 96.4 0.0018 6E-08 52.9 3.4 23 148-170 3-25 (301)
384 1g16_A RAS-related protein SEC 96.4 0.0018 6.2E-08 47.5 3.2 23 149-171 5-27 (170)
385 1svi_A GTP-binding protein YSX 96.4 0.0016 5.5E-08 49.2 3.0 24 148-171 24-47 (195)
386 3b1v_A Ferrous iron uptake tra 96.4 0.0017 5.9E-08 52.5 3.3 24 148-171 4-27 (272)
387 3vr4_D V-type sodium ATPase su 96.4 0.0067 2.3E-07 52.4 7.0 96 142-237 146-256 (465)
388 3crm_A TRNA delta(2)-isopenten 96.4 0.0018 6.2E-08 53.6 3.4 24 148-171 6-29 (323)
389 3ihw_A Centg3; RAS, centaurin, 96.4 0.002 6.9E-08 48.5 3.4 23 148-170 21-43 (184)
390 3pqc_A Probable GTP-binding pr 96.4 0.0017 5.7E-08 48.9 3.0 24 148-171 24-47 (195)
391 3tw8_B RAS-related protein RAB 96.4 0.0017 5.7E-08 48.2 2.9 24 148-171 10-33 (181)
392 1r2q_A RAS-related protein RAB 96.4 0.002 7E-08 47.1 3.4 23 149-171 8-30 (170)
393 1f6b_A SAR1; gtpases, N-termin 96.4 0.0012 4.3E-08 50.3 2.2 34 136-170 15-48 (198)
394 3gqb_B V-type ATP synthase bet 96.4 0.0076 2.6E-07 52.1 7.2 94 143-237 143-259 (464)
395 1r8s_A ADP-ribosylation factor 96.4 0.0021 7.2E-08 46.9 3.4 23 149-171 2-24 (164)
396 1tue_A Replication protein E1; 96.4 0.0032 1.1E-07 48.7 4.4 35 137-171 48-82 (212)
397 2hxs_A RAB-26, RAS-related pro 96.4 0.0024 8.1E-08 47.3 3.6 23 149-171 8-30 (178)
398 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0021 7.3E-08 48.0 3.4 23 149-171 6-28 (189)
399 1upt_A ARL1, ADP-ribosylation 96.4 0.0021 7.3E-08 47.2 3.4 24 148-171 8-31 (171)
400 2c61_A A-type ATP synthase non 96.4 0.0095 3.3E-07 51.7 7.8 94 144-237 149-257 (469)
401 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0017 5.7E-08 54.9 3.0 24 148-171 180-203 (364)
402 2oil_A CATX-8, RAS-related pro 96.4 0.0022 7.4E-08 48.5 3.4 24 148-171 26-49 (193)
403 2cxx_A Probable GTP-binding pr 96.4 0.0018 6.1E-08 48.6 2.9 23 149-171 3-25 (190)
404 1ak2_A Adenylate kinase isoenz 96.4 0.0021 7.2E-08 50.5 3.4 24 148-171 17-40 (233)
405 3llm_A ATP-dependent RNA helic 96.4 0.0031 1.1E-07 49.6 4.4 34 136-169 65-98 (235)
406 1m7b_A RND3/RHOE small GTP-bin 96.4 0.002 7E-08 48.3 3.2 24 148-171 8-31 (184)
407 1z0f_A RAB14, member RAS oncog 96.4 0.0023 7.8E-08 47.4 3.4 24 148-171 16-39 (179)
408 3bc1_A RAS-related protein RAB 96.4 0.0023 7.7E-08 48.0 3.4 24 148-171 12-35 (195)
409 2xxa_A Signal recognition part 96.4 0.018 6.1E-07 49.7 9.4 24 148-171 101-124 (433)
410 2cjw_A GTP-binding protein GEM 96.3 0.0023 7.9E-08 48.6 3.4 23 148-170 7-29 (192)
411 1nrj_B SR-beta, signal recogni 96.3 0.0023 7.8E-08 49.4 3.4 24 148-171 13-36 (218)
412 2qag_A Septin-2, protein NEDD5 96.3 0.0015 5.3E-08 55.0 2.5 24 148-171 38-61 (361)
413 3clv_A RAB5 protein, putative; 96.3 0.0024 8.3E-08 48.2 3.4 24 148-171 8-31 (208)
414 2y8e_A RAB-protein 6, GH09086P 96.3 0.0023 8E-08 47.3 3.2 24 148-171 15-38 (179)
415 3kkq_A RAS-related protein M-R 96.3 0.0025 8.6E-08 47.5 3.4 24 148-171 19-42 (183)
416 3cbq_A GTP-binding protein REM 96.3 0.0016 5.6E-08 49.6 2.3 23 148-170 24-46 (195)
417 2bme_A RAB4A, RAS-related prot 96.3 0.0024 8.2E-08 47.7 3.2 24 148-171 11-34 (186)
418 2a9k_A RAS-related protein RAL 96.3 0.0026 8.9E-08 47.4 3.4 24 148-171 19-42 (187)
419 2efe_B Small GTP-binding prote 96.3 0.0027 9.2E-08 47.2 3.4 24 148-171 13-36 (181)
420 3oaa_A ATP synthase subunit al 96.3 0.033 1.1E-06 48.7 10.6 98 135-237 151-262 (513)
421 1vg8_A RAS-related protein RAB 96.3 0.0026 9E-08 48.4 3.4 24 148-171 9-32 (207)
422 2g6b_A RAS-related protein RAB 96.3 0.0027 9.1E-08 47.1 3.4 24 148-171 11-34 (180)
423 2bov_A RAla, RAS-related prote 96.3 0.0027 9.1E-08 48.3 3.4 24 148-171 15-38 (206)
424 3vr4_A V-type sodium ATPase ca 96.3 0.029 9.9E-07 49.8 10.1 49 135-189 221-269 (600)
425 3zvl_A Bifunctional polynucleo 96.2 0.0027 9.4E-08 54.5 3.6 25 147-171 258-282 (416)
426 3exa_A TRNA delta(2)-isopenten 96.2 0.0028 9.6E-08 52.2 3.5 25 147-171 3-27 (322)
427 2iwr_A Centaurin gamma 1; ANK 96.2 0.0023 7.7E-08 47.5 2.7 24 148-171 8-31 (178)
428 1moz_A ARL1, ADP-ribosylation 96.2 0.0015 5.1E-08 48.8 1.7 24 147-170 18-41 (183)
429 2gf9_A RAS-related protein RAB 96.2 0.003 1E-07 47.5 3.4 24 148-171 23-46 (189)
430 2fg5_A RAB-22B, RAS-related pr 96.2 0.0028 9.6E-08 47.9 3.2 24 148-171 24-47 (192)
431 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.003 1E-07 47.0 3.4 23 149-171 7-29 (186)
432 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0025 8.7E-08 54.2 3.2 28 143-170 18-45 (396)
433 3c5c_A RAS-like protein 12; GD 96.2 0.0031 1.1E-07 47.5 3.4 24 148-171 22-45 (187)
434 2h92_A Cytidylate kinase; ross 96.2 0.0025 8.7E-08 49.3 3.0 24 148-171 4-27 (219)
435 2gf0_A GTP-binding protein DI- 96.2 0.0029 1E-07 47.8 3.2 24 148-171 9-32 (199)
436 3oes_A GTPase rhebl1; small GT 96.2 0.0029 9.9E-08 48.2 3.2 24 148-171 25-48 (201)
437 3t5g_A GTP-binding protein RHE 96.2 0.003 1E-07 47.0 3.2 24 148-171 7-30 (181)
438 1ksh_A ARF-like protein 2; sma 96.2 0.0029 9.9E-08 47.4 3.1 25 147-171 18-42 (186)
439 3tkl_A RAS-related protein RAB 96.2 0.0032 1.1E-07 47.5 3.4 24 148-171 17-40 (196)
440 3upu_A ATP-dependent DNA helic 96.2 0.0064 2.2E-07 52.8 5.7 40 132-171 29-69 (459)
441 3dz8_A RAS-related protein RAB 96.2 0.003 1E-07 47.7 3.2 24 148-171 24-47 (191)
442 1zbd_A Rabphilin-3A; G protein 96.2 0.0032 1.1E-07 47.9 3.4 23 149-171 10-32 (203)
443 3lxw_A GTPase IMAP family memb 96.2 0.0031 1.1E-07 50.1 3.4 24 148-171 22-45 (247)
444 3bwd_D RAC-like GTP-binding pr 96.2 0.0033 1.1E-07 46.7 3.4 24 148-171 9-32 (182)
445 2ew1_A RAS-related protein RAB 96.2 0.003 1E-07 48.4 3.2 24 148-171 27-50 (201)
446 3iby_A Ferrous iron transport 96.2 0.003 1E-07 50.6 3.3 23 149-171 3-25 (256)
447 3llu_A RAS-related GTP-binding 96.2 0.0029 1E-07 48.0 3.1 24 148-171 21-44 (196)
448 3cmu_A Protein RECA, recombina 96.2 0.018 6.1E-07 58.2 9.3 93 137-237 1415-1513(2050)
449 2atv_A RERG, RAS-like estrogen 96.2 0.0033 1.1E-07 47.6 3.4 24 148-171 29-52 (196)
450 1zd9_A ADP-ribosylation factor 96.2 0.0033 1.1E-07 47.3 3.4 24 148-171 23-46 (188)
451 2r9v_A ATP synthase subunit al 96.1 0.019 6.7E-07 50.2 8.5 91 142-237 170-275 (515)
452 2e87_A Hypothetical protein PH 96.1 0.0025 8.7E-08 53.5 2.9 24 148-171 168-191 (357)
453 2a5j_A RAS-related protein RAB 96.1 0.0034 1.2E-07 47.3 3.4 24 148-171 22-45 (191)
454 3reg_A RHO-like small GTPase; 96.1 0.0035 1.2E-07 47.4 3.4 24 148-171 24-47 (194)
455 3cmu_A Protein RECA, recombina 96.1 0.03 1E-06 56.6 10.7 94 135-236 369-468 (2050)
456 1z06_A RAS-related protein RAB 96.1 0.0036 1.2E-07 47.1 3.4 24 148-171 21-44 (189)
457 3f9v_A Minichromosome maintena 96.1 0.0021 7E-08 57.9 2.3 44 128-171 295-351 (595)
458 2fh5_B SR-beta, signal recogni 96.1 0.0035 1.2E-07 48.2 3.4 24 148-171 8-31 (214)
459 1gwn_A RHO-related GTP-binding 96.1 0.0033 1.1E-07 48.3 3.2 24 148-171 29-52 (205)
460 1wf3_A GTP-binding protein; GT 96.1 0.0033 1.1E-07 51.6 3.4 24 148-171 8-31 (301)
461 3a1s_A Iron(II) transport prot 96.1 0.0034 1.2E-07 50.3 3.4 24 148-171 6-29 (258)
462 2xtp_A GTPase IMAP family memb 96.1 0.0033 1.1E-07 50.1 3.2 24 148-171 23-46 (260)
463 2qu8_A Putative nucleolar GTP- 96.1 0.0032 1.1E-07 49.1 3.1 24 148-171 30-53 (228)
464 2p5s_A RAS and EF-hand domain 96.1 0.0037 1.3E-07 47.5 3.4 24 148-171 29-52 (199)
465 3foz_A TRNA delta(2)-isopenten 96.1 0.0036 1.2E-07 51.5 3.4 24 148-171 11-34 (316)
466 1x3s_A RAS-related protein RAB 96.1 0.0038 1.3E-07 46.9 3.4 24 148-171 16-39 (195)
467 1zj6_A ADP-ribosylation factor 96.1 0.0035 1.2E-07 47.0 3.2 24 147-170 16-39 (187)
468 3a8t_A Adenylate isopentenyltr 96.1 0.0036 1.2E-07 52.1 3.4 25 147-171 40-64 (339)
469 2j37_W Signal recognition part 96.1 0.026 9E-07 49.6 9.1 24 148-171 102-125 (504)
470 2bcg_Y Protein YP2, GTP-bindin 96.1 0.0035 1.2E-07 47.8 3.2 24 148-171 9-32 (206)
471 4bas_A ADP-ribosylation factor 96.1 0.0032 1.1E-07 47.6 2.9 24 148-171 18-41 (199)
472 2o52_A RAS-related protein RAB 96.1 0.0034 1.2E-07 47.8 3.1 24 148-171 26-49 (200)
473 3t5d_A Septin-7; GTP-binding p 96.1 0.0026 9.1E-08 51.3 2.5 23 149-171 10-32 (274)
474 3cnl_A YLQF, putative uncharac 96.1 0.0061 2.1E-07 49.0 4.6 34 138-171 89-123 (262)
475 2g3y_A GTP-binding protein GEM 96.0 0.0038 1.3E-07 48.4 3.3 23 148-170 38-60 (211)
476 3bgw_A DNAB-like replicative h 96.0 0.032 1.1E-06 48.3 9.4 37 135-171 185-221 (444)
477 3iev_A GTP-binding protein ERA 96.0 0.0037 1.3E-07 51.4 3.4 24 148-171 11-34 (308)
478 3p32_A Probable GTPase RV1496/ 96.0 0.0054 1.8E-07 51.5 4.4 24 148-171 80-103 (355)
479 2dby_A GTP-binding protein; GD 96.0 0.0034 1.2E-07 53.0 3.2 23 149-171 3-25 (368)
480 2il1_A RAB12; G-protein, GDP, 96.0 0.0033 1.1E-07 47.5 2.8 24 148-171 27-50 (192)
481 3cph_A RAS-related protein SEC 96.0 0.0041 1.4E-07 47.5 3.4 24 148-171 21-44 (213)
482 2fv8_A H6, RHO-related GTP-bin 96.0 0.0039 1.3E-07 47.7 3.2 24 148-171 26-49 (207)
483 2h57_A ADP-ribosylation factor 96.0 0.0028 9.5E-08 47.7 2.3 24 148-171 22-45 (190)
484 2j1l_A RHO-related GTP-binding 96.0 0.0038 1.3E-07 48.2 3.1 24 148-171 35-58 (214)
485 3pxi_A Negative regulator of g 96.0 0.0059 2E-07 56.5 4.9 44 128-171 491-545 (758)
486 2q3h_A RAS homolog gene family 96.0 0.0041 1.4E-07 47.2 3.2 24 148-171 21-44 (201)
487 2h17_A ADP-ribosylation factor 96.0 0.0034 1.2E-07 46.9 2.7 24 148-171 22-45 (181)
488 3cf2_A TER ATPase, transitiona 96.0 0.026 8.9E-07 52.4 9.1 86 129-237 478-578 (806)
489 3auy_A DNA double-strand break 96.0 0.0035 1.2E-07 53.0 3.0 21 148-168 26-46 (371)
490 3cmw_A Protein RECA, recombina 96.0 0.022 7.7E-07 56.8 8.9 95 135-237 718-818 (1706)
491 3i8s_A Ferrous iron transport 96.0 0.0042 1.4E-07 50.2 3.2 23 149-171 5-27 (274)
492 4dhe_A Probable GTP-binding pr 95.9 0.0023 7.9E-08 49.5 1.6 24 148-171 30-53 (223)
493 1q57_A DNA primase/helicase; d 95.9 0.049 1.7E-06 47.8 10.2 36 136-171 231-266 (503)
494 2qmh_A HPR kinase/phosphorylas 95.9 0.0046 1.6E-07 47.5 3.2 25 147-171 34-58 (205)
495 2b6h_A ADP-ribosylation factor 95.9 0.0038 1.3E-07 47.3 2.7 23 148-170 30-52 (192)
496 2f7s_A C25KG, RAS-related prot 95.9 0.0048 1.6E-07 47.5 3.3 24 148-171 26-49 (217)
497 3mfy_A V-type ATP synthase alp 95.9 0.02 6.8E-07 50.6 7.4 52 135-192 216-267 (588)
498 2atx_A Small GTP binding prote 95.9 0.0049 1.7E-07 46.5 3.2 24 148-171 19-42 (194)
499 2gco_A H9, RHO-related GTP-bin 95.9 0.0047 1.6E-07 47.0 3.2 24 148-171 26-49 (201)
500 4edh_A DTMP kinase, thymidylat 95.9 0.0051 1.7E-07 47.8 3.3 26 146-171 5-30 (213)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.65 E-value=6.9e-16 Score=138.19 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=88.6
Q ss_pred cccchHHHHHHHHHHhhcC-----CEEEEEcCCCCcHHHHHHHHHh--ccccCCCcceEEEEEEecccc--CHHHHHHHH
Q 044827 129 TIVGQQATFQKVLNCLAEN-----AIIGLYGSGGVGKTTLLKQINN--NFCYGGHNFDIVIWVVVSKEL--KLERIQEDI 199 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~-----~vi~IvG~~G~GKTTL~~~i~~--~~~~~~~~f~~~~~v~v~~~~--~~~~~~~~i 199 (237)
..|||+..++.+..+|..+ .+|+|+||+|+||||||+.+|+ +. ....+|+..+|+++++.+ +...++..+
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 3369999999999988643 7999999999999999999998 34 567899999999999875 788899999
Q ss_pred HHHCCCCCC--C---cCCCCHHHHHHHHHHHhhcC-CcEEEecC
Q 044827 200 GKKIRLPTD--S---WKNRSIENEARDIYNILRKK-KFLLLLDD 237 (237)
Q Consensus 200 l~~~~~~~~--~---~~~~~~~~~~~~l~~~l~~~-~~LlvLDd 237 (237)
+.+++.... . ....+..+....|...|.++ ++||||||
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDd 251 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDD 251 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999986422 1 11223566678899999996 99999997
No 2
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.45 E-value=4.5e-14 Score=115.11 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=80.9
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc---
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL--- 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~--- 190 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ .+..
T Consensus 20 ~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v--~q~~~~~ 97 (266)
T 4g1u_C 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM--RQYSELA 97 (266)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE--CSCCCCC
T ss_pred EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE--ecCCccC
Confidence 356667788999999999999999999999999999999999888885422 1222 1110
Q ss_pred -------------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhc------CCcEEEecC
Q 044827 191 -------------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRK------KKFLLLLDD 237 (237)
Q Consensus 191 -------------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~------~~~LlvLDd 237 (237)
.......++++.+++.... ...++|++++..|+++|.. +|.+|+||+
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDE 173 (266)
T 4g1u_C 98 FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE 173 (266)
T ss_dssp SCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECC
T ss_pred CCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC
Confidence 1234567788899885432 2344599999999999998 999999996
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.44 E-value=2.2e-14 Score=114.15 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=77.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~-- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .....+.++.
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 44445678888889999999999999999999999999998777664311 0011222221
Q ss_pred ----C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 166 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 012345678888885432 2344599999999999999999999996
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.43 E-value=2.9e-14 Score=121.26 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=80.4
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E----------EEEEecccc------C
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V----------IWVVVSKEL------K 191 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~----------~~v~v~~~~------~ 191 (237)
.||....++++++.+..|++++|+||||+|||||+++|+|..++.+|...+ . -.-.+.|++ +
T Consensus 12 ~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 12 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred EECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 356666788888999999999999999999999999999999777775321 0 011222321 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 92 V~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 92 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp HHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 123456788889885321 2345699999999999999999999996
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.41 E-value=3.1e-14 Score=120.26 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=80.5
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EEE--------------EEecccc---
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VIW--------------VVVSKEL--- 190 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~~--------------v~v~~~~--- 190 (237)
.||....++++++.+..|++++|+||||+|||||+++|+|..++.+|...+ ..+ -.+.|++
T Consensus 13 ~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 13 SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 456666788889999999999999999999999999999999777775321 111 1222221
Q ss_pred ---C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 93 p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 123457788888885322 2345699999999999999999999996
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.40 E-value=6.7e-14 Score=118.14 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------C--
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------K-- 191 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~-- 191 (237)
|....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .. .-.+.+++ +
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 5555678888999999999999999999999999999998777775321 00 11223321 0
Q ss_pred ----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 171 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE 171 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 123456788889885321 2345699999999999999999999996
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.40 E-value=4.7e-14 Score=114.72 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~~-- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+ +.++.
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~--v~Q~~~l 111 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGM--VFQRFNL 111 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEE--ECSSCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEE--EeCCCcC
Confidence 55555788889999999999999999999999999999998776665321 112 22211
Q ss_pred ----CH-------------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----KL-------------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~~-------------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+. ...+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 112 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE 185 (263)
T 2olj_A 112 FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE 185 (263)
T ss_dssp CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 10 12345678888885321 2344699999999999999999999996
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.40 E-value=9.1e-14 Score=113.70 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E-E-------------EEEecccc-------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V-I-------------WVVVSKEL-------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~-~-------------~v~v~~~~-------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ . + .-.+.|++ +
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 3788888999999999999999999999999999998777775321 0 0 11223321 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+.++++.+++.... ...++|++++..|+++|..+|.+||||+
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE 169 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE 169 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 123456788888885321 2344699999999999999999999996
No 9
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.40 E-value=9.9e-14 Score=109.44 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=77.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------EEEEEecccc------CH-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------VIWVVVSKEL------KL- 192 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------~~~v~v~~~~------~~- 192 (237)
||. ..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+ +.++. +.
T Consensus 20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~--v~q~~~~~~~~tv~ 96 (214)
T 1sgw_A 20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF--LPEEIIVPRKISVE 96 (214)
T ss_dssp SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE--ECSSCCCCTTSBHH
T ss_pred eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE--EeCCCcCCCCCCHH
Confidence 455 6778888899999999999999999999999999998777775422 122 22211 10
Q ss_pred ---------------HHHHHHHHHHCCCCCC--C-cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ---------------ERIQEDIGKKIRLPTD--S-WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ---------------~~~~~~il~~~~~~~~--~-~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.++++.+++... . ...++|++++..|+++|..+|.+|+||+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDE 159 (214)
T 1sgw_A 97 DYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD 159 (214)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2345667888888642 1 1234599999999999999999999996
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.39 E-value=1.3e-13 Score=110.51 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------------EEEEEecccc-----
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------------VIWVVVSKEL----- 190 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------------~~~v~v~~~~----- 190 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ .+++
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v--~Q~~~l~~~ 97 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFV--FQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEE--CTTCCCCTT
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEE--ecCCccCCC
Confidence 577888899999999999999999999999999999777775321 2222 2221
Q ss_pred -C---------------------HHHHHHHHHHHCCCCCC-----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K---------------------LERIQEDIGKKIRLPTD-----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~---------------------~~~~~~~il~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++... ....++|++++..|+++|..+|.+|+||+
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDE 171 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 11234567788887532 12344699999999999999999999996
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.39 E-value=1e-13 Score=117.44 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------C-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------K- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~- 191 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .. .-.+.+++ +
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 45445677888889999999999999999999999999998777775321 00 11222221 0
Q ss_pred -----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 93 YKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 012356788889986432 2344699999999999999999999996
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.38 E-value=5e-14 Score=114.63 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EE------------------------E
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VI------------------------W 183 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~------------------------~ 183 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .+ .
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 55555788888999999999999999999999999999998777775311 00 1
Q ss_pred EEecccc------CH-------------------HHHHHHHHHHCCCCCC-C----cCCCCHHHHHHHHHHHhhcCCcEE
Q 044827 184 VVVSKEL------KL-------------------ERIQEDIGKKIRLPTD-S----WKNRSIENEARDIYNILRKKKFLL 233 (237)
Q Consensus 184 v~v~~~~------~~-------------------~~~~~~il~~~~~~~~-~----~~~~~~~~~~~~l~~~l~~~~~Ll 233 (237)
..+.++. +. .....++++.+++... . ...++|++++..|+++|..+|.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 175 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVL 175 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222221 10 1234567888888532 1 234459999999999999999999
Q ss_pred EecC
Q 044827 234 LLDD 237 (237)
Q Consensus 234 vLDd 237 (237)
+||+
T Consensus 176 lLDE 179 (262)
T 1b0u_A 176 LFDE 179 (262)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9996
No 13
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.38 E-value=6e-14 Score=113.56 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEEecccc-------------------
Q 044827 133 QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVVVSKEL------------------- 190 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~v~~~~------------------- 190 (237)
....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.... ..++ .++.
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v--~q~~~~~~~~tv~enl~~~~~~~ 94 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFV--PQFFSSPFAYSVLDIVLMGRSTH 94 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEE--CSCCCCSSCCBHHHHHHGGGGGG
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEE--cCCCccCCCCCHHHHHHHhhhhh
Confidence 445677888889999999999999999999999999998777776531 1222 1110
Q ss_pred -------C--HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------K--LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~--~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE 154 (253)
T 2nq2_C 95 INTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE 154 (253)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred cccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 123456788888885321 2344599999999999999999999996
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.38 E-value=1e-13 Score=112.34 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=77.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------EEEEEecccc-----
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------VIWVVVSKEL----- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------~~~v~v~~~~----- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ ..+ +.++.
T Consensus 25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~--v~q~~~l~~~ 102 (256)
T 1vpl_A 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY--LPEEAGAYRN 102 (256)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE--ECTTCCCCTT
T ss_pred ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE--EcCCCCCCCC
Confidence 55555788888999999999999999999999999999998777775421 112 22211
Q ss_pred -C---------------H---HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -K---------------L---ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -~---------------~---~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ . .....++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 103 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 103 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp SBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1 0 12345678888885321 2345599999999999999999999996
No 15
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.38 E-value=1.5e-13 Score=116.11 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E---------------EEEEecccc------C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V---------------IWVVVSKEL------K 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~---------------~~v~v~~~~------~ 191 (237)
..++++++.+..|++++|+|+||+|||||+++|++..++.+|...+ . -.-.+.|++ +
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 4688899999999999999999999999999999999777775321 0 011223321 0
Q ss_pred ------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+|+.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDE 189 (366)
T 3tui_C 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ 189 (366)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 123456788888885322 2344599999999999999999999996
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.37 E-value=8.2e-14 Score=117.86 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------C-
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------K- 191 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~- 191 (237)
||....++++++.+..|++++|+||||+|||||+++|+|..++.+|...+ .. .-.+.+++ +
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45445677888889999999999999999999999999998777775321 00 01222221 0
Q ss_pred -------------H----HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 -------------L----ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 -------------~----~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .....++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0 12456788999885321 2345699999999999999999999996
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.37 E-value=1.7e-13 Score=110.10 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v~v~~~~--- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ .++.
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~l~ 93 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV--PEGRRIF 93 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE--CSSCCCC
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE--ecCCccC
Confidence 45445678888899999999999999999999999999998777764321 1222 2210
Q ss_pred --------------------CHHHHHHHHHHHCC-CCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------------KLERIQEDIGKKIR-LPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------------~~~~~~~~il~~~~-~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....+..+++.++ +... ....++|++++..|+++|..+|.+|+||+
T Consensus 94 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE 165 (240)
T 1ji0_A 94 PELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp TTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 01234456777774 5322 12344599999999999999999999996
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.36 E-value=3.7e-14 Score=115.15 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-----------------EEEEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-----------------VIWVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-----------------~~~v~v~~~~--- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+ +.++.
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~--v~q~~~l~ 94 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR--TFQTPQPL 94 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE--CCCCCGGG
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE--EccCCccC
Confidence 55555788889999999999999999999999999999998776664311 111 11110
Q ss_pred ------------------C----------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcE
Q 044827 191 ------------------K----------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFL 232 (237)
Q Consensus 191 ------------------~----------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~L 232 (237)
. ......++++.+++.... ...++|++++..|+++|..+|.+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l 174 (257)
T 1g6h_A 95 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKM 174 (257)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 0 112346678888885321 23445999999999999999999
Q ss_pred EEecC
Q 044827 233 LLLDD 237 (237)
Q Consensus 233 lvLDd 237 (237)
|+||+
T Consensus 175 llLDE 179 (257)
T 1g6h_A 175 IVMDE 179 (257)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99996
No 19
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.36 E-value=1.2e-13 Score=111.27 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEE---------Eeccc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWV---------VVSKE 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v---------~v~~~ 189 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ ++.++
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 95 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN 95 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHH
Confidence 4567788889999999999999999999999999998777775321 1111 11111
Q ss_pred c-------CHHHHHHHHHHHCCCCCCC---------------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 L-------KLERIQEDIGKKIRLPTDS---------------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ~-------~~~~~~~~il~~~~~~~~~---------------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ........+++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 96 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDE 165 (243)
T 1mv5_A 96 LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDE 165 (243)
T ss_dssp TTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0 0123345667777664311 1344599999999999999999999996
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.36 E-value=4.7e-14 Score=118.94 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------CH
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------KL 192 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~~ 192 (237)
||.. .++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .. .-.+.+++ +.
T Consensus 11 y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 11 WKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp CSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCH
T ss_pred ECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCH
Confidence 4444 677888889999999999999999999999999999777775322 10 01222321 10
Q ss_pred ---------------HHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ---------------ERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ---------------~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 90 ~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE 153 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 13456788889886432 2344699999999999999999999996
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.36 E-value=2.3e-13 Score=115.06 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=78.7
Q ss_pred cchHH--HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE---------------EEEecccc-
Q 044827 131 VGQQA--TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI---------------WVVVSKEL- 190 (237)
Q Consensus 131 ~g~~~--~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~---------------~v~v~~~~- 190 (237)
||... .++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .. .-.+.+++
T Consensus 13 y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~ 92 (353)
T 1oxx_K 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92 (353)
T ss_dssp EGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC
T ss_pred ECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCc
Confidence 55555 677888899999999999999999999999999998777775321 00 01222221
Q ss_pred --------------------C---HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------------------K---LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------------------~---~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ......++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 93 l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE 166 (353)
T 1oxx_K 93 LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE 166 (353)
T ss_dssp CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 0 123456788899885321 2345699999999999999999999996
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.35 E-value=1.2e-13 Score=113.33 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=77.6
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE------------------EEEEEeccc--
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI------------------VIWVVVSKE-- 189 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~------------------~~~v~v~~~-- 189 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ .++
T Consensus 30 ~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v--~Q~~~ 107 (279)
T 2ihy_A 30 MKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFV--SHSLL 107 (279)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEE--CHHHH
T ss_pred EECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEE--EcCcc
Confidence 355556788899999999999999999999999999999998776664311 1122 111
Q ss_pred --c----C----------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 --L----K----------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 --~----~----------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ + ....+.++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 108 ~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE 187 (279)
T 2ihy_A 108 EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187 (279)
T ss_dssp TTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0 0 012345678888885321 2344599999999999999999999996
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.35 E-value=2.9e-13 Score=115.11 Aligned_cols=107 Identities=15% Similarity=0.193 Sum_probs=78.1
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EEE----------------EEecccc--
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VIW----------------VVVSKEL-- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~~----------------v~v~~~~-- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+ -.+.|++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 45445677888889999999999999999999999999999777775321 111 1223321
Q ss_pred ----C------------------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----K------------------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----~------------------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ......++++.+++.... ...++|++|+..|+++|..+|.+|+||+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 165 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE 165 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 0 012346778888885321 2345699999999999999999999996
No 24
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.34 E-value=1.3e-12 Score=122.45 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHHHhhc---CCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-EEEEEeccccCHHHHHHHHHHHCCC
Q 044827 130 IVGQQATFQKVLNCLAE---NAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-VIWVVVSKELKLERIQEDIGKKIRL 205 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~---~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-~~~v~v~~~~~~~~~~~~il~~~~~ 205 (237)
.+||+..++.+...|.. ..+++|+||+|+||||||+.++++. .+..+|+. .+|+++++.++...++..++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 48999999999998875 3899999999999999999999865 44667886 8999999988887777776664321
Q ss_pred CC---C-CcCC-----CCHHHHHHHHHHHh---hcCCcEEEecC
Q 044827 206 PT---D-SWKN-----RSIENEARDIYNIL---RKKKFLLLLDD 237 (237)
Q Consensus 206 ~~---~-~~~~-----~~~~~~~~~l~~~l---~~~~~LlvLDd 237 (237)
.. . .... .+.+.....|...| .++++||||||
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDD 252 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEES
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 10 0 0000 11234445566655 67999999998
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.34 E-value=9.6e-14 Score=117.99 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEE----------Ee
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWV----------VV 186 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v----------~v 186 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ ++
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 55545678888899999999999999999999999999998777664321 1111 11
Q ss_pred ccc--c-------C---HHHHHHHHHHHCCCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 187 SKE--L-------K---LERIQEDIGKKIRLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 187 ~~~--~-------~---~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.++ + . ......++++.+++... ....++|++|+..|+++|..+|.+|+||+
T Consensus 101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111 0 1 12345678899988532 12455699999999999999999999996
No 26
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.34 E-value=1.5e-13 Score=110.25 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEEecccc-----CH-----------HHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVVVSKEL-----KL-----------ERI 195 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~v~~~~-----~~-----------~~~ 195 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ ..++ .++. +. ...
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v--~Q~~~~~~~tv~enl~~~~~~~~~~ 96 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYV--PQQAWIQNDSLRENILFGCQLEEPY 96 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEE--CSSCCCCSEEHHHHHHTTSCCCTTH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEE--cCCCcCCCcCHHHHhhCccccCHHH
Confidence 4577788889999999999999999999999999998777776432 2222 2211 00 111
Q ss_pred HHHHHHHCCC------C---------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIGKKIRL------P---------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il~~~~~------~---------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+++.+++ . ......++|++++..|+++|..+|.+|+||+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2233332221 1 1112345699999999999999999999996
No 27
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.32 E-value=1.1e-13 Score=111.15 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=72.9
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE----------EEEecccc------C-------
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI----------WVVVSKEL------K------- 191 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~----------~v~v~~~~------~------- 191 (237)
++++++.+.. ++++|+|+||+|||||+++|+|..++.+|...+ .. ...+.++. +
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence 6778888889 999999999999999999999998777665321 00 00111110 0
Q ss_pred ---------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ---------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ---------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|.+|+||+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 123456788889885422 2344599999999999999999999996
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.31 E-value=3e-13 Score=110.00 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE-------------EEEEEecccc----CH----
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI-------------VIWVVVSKEL----KL---- 192 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~-------------~~~v~v~~~~----~~---- 192 (237)
...++++++.+. |++++|+|+||+|||||+++|+|.. +.+|...+ ..| .+.++. +.
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl 94 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIV 94 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHH
Confidence 346777888999 9999999999999999999999998 87775422 110 233321 11
Q ss_pred ----------HHHHHHHHHHCCCC-CCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ----------ERIQEDIGKKIRLP-TDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ----------~~~~~~il~~~~~~-~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+.++++.+++. ... ...++|++++..|+++|..+|.+|+||+
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred HHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 23356788889886 321 2344599999999999999999999996
No 29
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.30 E-value=3.7e-13 Score=107.38 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEEecccc-----CH-----------HHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVVVSKEL-----KL-----------ERI 195 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~v~~~~-----~~-----------~~~ 195 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..++ .++. +. ...
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v--~q~~~~~~~tv~enl~~~~~~~~~~ 99 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC--SQFSWIMPGTIKENIIFGVSYDEYR 99 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEE--CSSCCCCSBCHHHHHHTTSCCCHHH
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEE--ecCCcccCCCHHHHhhccCCcChHH
Confidence 4677788889999999999999999999999999999777776533 2222 2211 10 111
Q ss_pred HHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDE 156 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 156 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 223333333310 012345599999999999999999999996
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.30 E-value=1.5e-12 Score=106.11 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EE---------EEEecccc-------C-----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VI---------WVVVSKEL-------K----- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~---------~v~v~~~~-------~----- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ .. ...+.++. +
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 3577788889999999999999999999999999998777775422 00 11222220 0
Q ss_pred ------------HHHHHHHHHHHCCCC--CC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------LERIQEDIGKKIRLP--TD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------~~~~~~~il~~~~~~--~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
......++++.+++. .. ....++|++++..|+++|..+|.+|+||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 101 AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp HHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 022356788888886 31 12345699999999999999999999996
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.30 E-value=1.2e-13 Score=111.62 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=71.4
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhc--cccCCCcceE--EE-------------EEEecccc---
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNN--FCYGGHNFDI--VI-------------WVVVSKEL--- 190 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~--~~~~~~~f~~--~~-------------~v~v~~~~--- 190 (237)
||....++++++.+..|++++|+|+||+|||||+++|+|. .++.+|...+ .. ...+.++.
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4444567788888999999999999999999999999996 4455553211 00 00111211
Q ss_pred ---C---------------------HHHHHHHHHHHCCCC-C---CC-cC-CCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---K---------------------LERIQEDIGKKIRLP-T---DS-WK-NRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---~---------------------~~~~~~~il~~~~~~-~---~~-~~-~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ....+.++++.+++. . .. .. .++|++++..|+++|..+|.+|+||+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE 169 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDE 169 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEEC
T ss_pred cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 012345677788883 2 11 23 56799999999999999999999996
No 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.30 E-value=6.1e-13 Score=107.26 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc-----C--
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-----K-- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-----~-- 191 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+ +.++. +
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~--v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV--VLQDNVLLNRSII 100 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE--ECSSCCCTTSBHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE--EeCCCccccccHH
Confidence 4677888889999999999999999999999999998777664321 122 22221 0
Q ss_pred ----------HHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ----------LERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ----------~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
....+..+++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDE 171 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 171 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1122334455555421 112345699999999999999999999996
No 33
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.30 E-value=7.2e-12 Score=121.12 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=82.4
Q ss_pred CcccchHHHHHHHHHHhhc----CCEEEEEcCCCCcHHHHHHHHHhccccCCC-cceEEEEEEeccccC--HHHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAE----NAIIGLYGSGGVGKTTLLKQINNNFCYGGH-NFDIVIWVVVSKELK--LERIQEDIG 200 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~----~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~-~f~~~~~v~v~~~~~--~~~~~~~il 200 (237)
+.++||+.+++.+...|.. ..+++|+||+|+||||||+.+++......+ .++...|+++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 4589999999999999942 379999999999999999999987532344 456788999988543 344456677
Q ss_pred HHCCCCCCC--cCCCCHHHHHHHHHHHhhcC--CcEEEecC
Q 044827 201 KKIRLPTDS--WKNRSIENEARDIYNILRKK--KFLLLLDD 237 (237)
Q Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~--~~LlvLDd 237 (237)
..++..... ....+.+.....|...+.++ ++||||||
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd 244 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDD 244 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEES
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEec
Confidence 776653321 12334677777888888877 99999998
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.28 E-value=7.1e-13 Score=108.11 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=75.7
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcceE--------------E-EEEEeccccC-
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFDI--------------V-IWVVVSKELK- 191 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~~--------------~-~~v~v~~~~~- 191 (237)
.||....++++++.+..|++++|+|+||+|||||+++|+|.. ++..|...+ . ....+.++..
T Consensus 29 ~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccc
Confidence 355556788889999999999999999999999999999973 344553211 0 0112222210
Q ss_pred ---------------------------H---HHHHHHHHHHCCCCC---CC-c--CCCCHHHHHHHHHHHhhcCCcEEEe
Q 044827 192 ---------------------------L---ERIQEDIGKKIRLPT---DS-W--KNRSIENEARDIYNILRKKKFLLLL 235 (237)
Q Consensus 192 ---------------------------~---~~~~~~il~~~~~~~---~~-~--~~~~~~~~~~~l~~~l~~~~~LlvL 235 (237)
. ...+.++++.+++.. .. . ..++|++++..|+++|..+|.+|+|
T Consensus 109 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlL 188 (267)
T 2zu0_C 109 IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 188 (267)
T ss_dssp CTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0 123456788888852 11 1 2456999999999999999999999
Q ss_pred cC
Q 044827 236 DD 237 (237)
Q Consensus 236 Dd 237 (237)
|+
T Consensus 189 DE 190 (267)
T 2zu0_C 189 DE 190 (267)
T ss_dssp ES
T ss_pred eC
Confidence 96
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.27 E-value=1.4e-12 Score=105.29 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc------C--
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL------K-- 191 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~------~-- 191 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++. |.+.+ ..++ .++. +
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL--SQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE--CSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE--CCCCccCCCCcHH
Confidence 456677788899999999999999999999999998776 75422 1222 2210 0
Q ss_pred -----------HHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCc-------EEEecC
Q 044827 192 -----------LERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKF-------LLLLDD 237 (237)
Q Consensus 192 -----------~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~-------LlvLDd 237 (237)
......++++.+++.... ...++|++++..|+++|..+|. +|+||+
T Consensus 92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 034456788888885321 2344599999999999999999 999996
No 36
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=110.79 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=77.1
Q ss_pred CcccchHHHHHHHHHHhhc----CCEEEEEcCCCCcHHHHHHHHHhccccC-CCcc-eEEEEEEeccccCHHHHH---HH
Q 044827 128 RTIVGQQATFQKVLNCLAE----NAIIGLYGSGGVGKTTLLKQINNNFCYG-GHNF-DIVIWVVVSKELKLERIQ---ED 198 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~----~~vi~IvG~~G~GKTTL~~~i~~~~~~~-~~~f-~~~~~v~v~~~~~~~~~~---~~ 198 (237)
+.++||+..++.+...+.. ..+++|+||+|+||||||+.+++.. .. .+.| +.+.|++++.. +...++ ..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 4689999999999999863 3799999999999999999999864 22 4567 57999998765 222232 33
Q ss_pred HHHHCCCCCC--CcCCCCHHHHHHHHHHHhhc--CCcEEEecC
Q 044827 199 IGKKIRLPTD--SWKNRSIENEARDIYNILRK--KKFLLLLDD 237 (237)
Q Consensus 199 il~~~~~~~~--~~~~~~~~~~~~~l~~~l~~--~~~LlvLDd 237 (237)
++..++.... .....+.+.....|...+.+ +++||||||
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDd 244 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDD 244 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeC
Confidence 3445543111 11233456666678887876 789999997
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.24 E-value=2e-12 Score=110.59 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--------------EEEEEecccc-------
Q 044827 132 GQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--------------VIWVVVSKEL------- 190 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--------------~~~v~v~~~~------- 190 (237)
|....++++++.+..|++++|+||||+|||||+++|+|..+ .+|...+ .....+.|++
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv 110 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEH
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCH
Confidence 44567888999999999999999999999999999999874 5553211 0001222211
Q ss_pred ---------CHHHHHHHHHHHCCCCC---C-CcC-----------CCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLERIQEDIGKKIRLPT---D-SWK-----------NRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~~~~~il~~~~~~~---~-~~~-----------~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......++++.+++.. . ... .++|++|+..|+++|..+|.+|+||+
T Consensus 111 ~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDE 181 (390)
T 3gd7_A 111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 181 (390)
T ss_dssp HHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11334567788887742 1 111 46699999999999999999999996
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.23 E-value=9.4e-13 Score=109.15 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc-------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~------- 190 (237)
...++++++.+..|++++|+|+||+|||||+++|++...+.+|.+.+ ..+ +.|+.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~--v~Q~~~lf~~Tv 144 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV--VPQDTVLFNDTI 144 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE--ECSSCCCCSEEH
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE--EecCCccCcccH
Confidence 45688889999999999999999999999999999998777775322 222 22221
Q ss_pred ----------CHHHHHHHHHHHCCCC---------------CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----------KLERIQEDIGKKIRLP---------------TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----------~~~~~~~~il~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.........++..++. ......++|++++..|+++|..++.+||||+
T Consensus 145 ~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDE 216 (306)
T 3nh6_A 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDE 216 (306)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 0012223333333321 1112345699999999999999999999996
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.21 E-value=2.8e-12 Score=104.73 Aligned_cols=102 Identities=24% Similarity=0.252 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc-----C-
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-----K- 191 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-----~- 191 (237)
...++++++.+..|++++|+|+||+|||||+++|+|..++.+|.+.+ ..++ .++. +
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v--~Q~~~l~~~tv 109 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV--GQEPLLFGRSF 109 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE--CSSCCCCSSBH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEE--ecCCccccccH
Confidence 34688888999999999999999999999999999998777675321 1222 2211 0
Q ss_pred ------------H-HHH--------HHHHHHHC--CCCCC----CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 ------------L-ERI--------QEDIGKKI--RLPTD----SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 ------------~-~~~--------~~~il~~~--~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. ... +.++++.+ |+... ....++|++++..|+++|..+|.+|+||+
T Consensus 110 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE 182 (271)
T 2ixe_A 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN 182 (271)
T ss_dssp HHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0 110 12345555 33211 12345599999999999999999999996
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.18 E-value=1.4e-11 Score=100.11 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc---------
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL--------- 190 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~--------- 190 (237)
.++++++.+..|++++|+|+||+|||||+++|+|..++ .|...+ ..+ +.++.
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~--v~Q~~~l~~~tv~e 111 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGI--VPQDTILFNETIKY 111 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEE--ECSSCCCCSEEHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEE--EcCCCcccccCHHH
Confidence 57778888999999999999999999999999998843 554311 112 22211
Q ss_pred --------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......++++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 112 nl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 181 (260)
T 2ghi_A 112 NILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE 181 (260)
T ss_dssp HHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 01122344555554311 112345699999999999999999999996
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.18 E-value=1.4e-11 Score=110.92 Aligned_cols=104 Identities=14% Similarity=0.211 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc---------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL--------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~--------- 190 (237)
...+++++..+..|++++|+|+||+|||||++.++|..++.+|...+ . ....+.|+.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIAN 435 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHH
Confidence 45899999999999999999999999999999999999888885321 0 011222221
Q ss_pred ---------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+...+.++.+++.. .....++|++|+..|+++|..+|.+|+||+
T Consensus 436 ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDE 506 (582)
T 3b5x_A 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE 506 (582)
T ss_pred HHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 01223445556555421 012345699999999999999999999997
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.17 E-value=4.6e-12 Score=104.34 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEEecccc-----CHH----------HHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVVVSKEL-----KLE----------RIQ 196 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~v~~~~-----~~~----------~~~ 196 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++.+|...+ ..+ +.++. +.. ...
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~--v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF--CSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEE--ECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEE--EeCCCccCcccHHHHhhCcccchHHH
Confidence 4577778888899999999999999999999999998777775422 222 22211 111 111
Q ss_pred HHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 197 EDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 197 ~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+++.+++.. .....++|++++..|+++|..+|.+|+||+
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 22333343310 002345699999999999999999999996
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.15 E-value=1.1e-11 Score=110.40 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=73.6
Q ss_pred cchH-HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc-----------e---------------EEEE
Q 044827 131 VGQQ-ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF-----------D---------------IVIW 183 (237)
Q Consensus 131 ~g~~-~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f-----------~---------------~~~~ 183 (237)
||.. ..+.+++ .+..|++++|+|+||+|||||+++|+|..++..|.. + ..+.
T Consensus 31 yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 109 (538)
T 1yqt_A 31 YGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109 (538)
T ss_dssp CSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCE
T ss_pred ECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhh
Confidence 4443 2456666 678899999999999999999999999887766652 0 0000
Q ss_pred EEecccc---------CHH---------HHHHHHHHHCCCCCCCc----CCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 184 VVVSKEL---------KLE---------RIQEDIGKKIRLPTDSW----KNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 184 v~v~~~~---------~~~---------~~~~~il~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+.+.. ... ....++++.+|+..... ..++|++++..|+++|..+|.+||||+
T Consensus 110 -~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDE 184 (538)
T 1yqt_A 110 -VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE 184 (538)
T ss_dssp -EECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred -hhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 111110 111 13467888899864321 234599999999999999999999996
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.15 E-value=7.6e-11 Score=106.33 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=67.6
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE-EEEecccc------CH--------------HHHHHHHHHH
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI-WVVVSKEL------KL--------------ERIQEDIGKK 202 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~-~v~v~~~~------~~--------------~~~~~~il~~ 202 (237)
+..|++++|+|+||+|||||+++|+|..++..|...+.. ...+.++. +. .....++++.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 467899999999999999999999999878788653211 11222221 11 1123556778
Q ss_pred CCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 203 IRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 203 ~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+++.... ...++|++++..|+++|..++.+||||+
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE 497 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE 497 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 8885322 1344599999999999999999999996
No 45
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.2e-10 Score=105.00 Aligned_cols=95 Identities=19% Similarity=0.120 Sum_probs=68.4
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEE---------------------------EEEEecccc-----
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIV---------------------------IWVVVSKEL----- 190 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~---------------------------~~v~v~~~~----- 190 (237)
.+..|++++|+|+||+|||||+++|+|..++..|.+... ..+...+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 356789999999999999999999999998888865200 000000000
Q ss_pred ------------------CHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------------KLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------------~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......++++.+++.... ...++|++++..|+++|..++.+|+||+
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE 247 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 0114566788888885322 2344599999999999999999999996
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.13 E-value=6.1e-11 Score=105.69 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=66.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEE-EEEecccc------CHH--------------HHHHHHHHH
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVI-WVVVSKEL------KLE--------------RIQEDIGKK 202 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~-~v~v~~~~------~~~--------------~~~~~il~~ 202 (237)
+..|++++|+|+||+|||||+++|+|..++..|...+.. ...+.++. +.. ....++++.
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 467899999999999999999999999877778653211 11223221 111 123445666
Q ss_pred CCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 203 IRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 203 ~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+++.... ...++|++++..|+++|..++.+||||+
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE 427 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 7764211 1344589999999999999999999996
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.11 E-value=9.6e-11 Score=104.29 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=65.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------------------------EEEEEecccc-------
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------------------------VIWVVVSKEL------- 190 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------------------------~~~v~v~~~~------- 190 (237)
..|++++|+|+||+|||||+++|+|...+..|.+.. .......+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 356999999999999999999999998777775410 0011111100
Q ss_pred --CHH---------HHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 --KLE---------RIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 --~~~---------~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
... ....++++.+++.... ...++|++++..|+++|..++.+||||+
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDE 164 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQ 164 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 111 1345678888875321 2344599999999999999999999996
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.11 E-value=1.8e-11 Score=110.39 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=74.5
Q ss_pred ccchH-HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc-----------e---------------EEE
Q 044827 130 IVGQQ-ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF-----------D---------------IVI 182 (237)
Q Consensus 130 ~~g~~-~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f-----------~---------------~~~ 182 (237)
.||.. ..+.+++ .+..|++++|+|+||+|||||+++|+|...+..|.. . ..+
T Consensus 100 ~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i 178 (607)
T 3bk7_A 100 RYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178 (607)
T ss_dssp ECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCC
T ss_pred EECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcce
Confidence 35543 2566676 778999999999999999999999999987777652 0 000
Q ss_pred EEEecccc---------CHH---------HHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 183 WVVVSKEL---------KLE---------RIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 183 ~v~v~~~~---------~~~---------~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .+.+.. +.. ....++++.+|+.... ...++|++++..|+++|..+|.+|+||+
T Consensus 179 ~-~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDE 254 (607)
T 3bk7_A 179 V-VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE 254 (607)
T ss_dssp E-EECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred E-EeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0 111110 111 2346788889986422 1335699999999999999999999996
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.09 E-value=1e-10 Score=104.04 Aligned_cols=94 Identities=22% Similarity=0.235 Sum_probs=65.3
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--EEEEEeccc------cCHH---------------HHHHHHH
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--VIWVVVSKE------LKLE---------------RIQEDIG 200 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~~~v~v~~~------~~~~---------------~~~~~il 200 (237)
+..|++++|+|+||+|||||+++|+|..++..|.... .....+.+. .+.. ....+++
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 5678999999999999999999999999888886421 101112221 0111 1234555
Q ss_pred HHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 201 KKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 201 ~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.+++.... ...++|++|+..|+++|..+|.+||||+
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE 411 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ 411 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 666664221 2334599999999999999999999996
No 50
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.07 E-value=1.9e-11 Score=95.92 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=63.8
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEE-----------EeccccCHHHH-
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWV-----------VVSKELKLERI- 195 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v-----------~v~~~~~~~~~- 195 (237)
+.-||....++++ ..|++++|+|+||+|||||+++|+|. ++.+|.+...... .+.++. ...+
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-~enl~ 80 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-NEKID 80 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------C
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-HHHHH
Confidence 3446776677774 78999999999999999999999999 7888887532111 011111 0000
Q ss_pred --HHHHHHHC-CCCCCC-----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 --QEDIGKKI-RLPTDS-----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 --~~~il~~~-~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.......+ ...... ....-|++++..|+++|..+|.+|+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 81 PYLRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp TTTHHHHHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeC
Confidence 00001111 000000 0001177788889999999999999996
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.05 E-value=4e-10 Score=101.53 Aligned_cols=100 Identities=21% Similarity=0.162 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcC-----CEEEEEcCCCCcHHHHHHHHHhccccCCCcceE---EEEEEeccc------------------
Q 044827 136 TFQKVLNCLAEN-----AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---VIWVVVSKE------------------ 189 (237)
Q Consensus 136 ~~~~i~~~l~~~-----~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---~~~v~v~~~------------------ 189 (237)
.++++++.+..| ++++|+|+||+|||||+++|+|..++..|..-. ..++ .+.
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~--~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK--PQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEE--CSSCCCCCCSBHHHHHHHHCS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEe--cccccccCCccHHHHHHHHhh
Confidence 345566666666 789999999999999999999999887774210 1111 111
Q ss_pred --cCHHHHHHHHHHHCCCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 --LKLERIQEDIGKKIRLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 --~~~~~~~~~il~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.......++++.+++.... ...++|++|+..|+++|..++.+|+||+
T Consensus 440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE 493 (608)
T ss_dssp STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 01123445677778875322 2344599999999999999999999996
No 52
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.04 E-value=1.4e-11 Score=110.92 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc-------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~------- 190 (237)
...+++++..+..|++++|+|+||+|||||++.++|..++.+|...+ ..+ +.|+.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~--v~Q~~~l~~~tv 433 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL--VSQNVHLFNDTV 433 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE--ECSSCCCCSSBH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeE--EccCCcCCCCCH
Confidence 35788899999999999999999999999999999998777774321 122 22221
Q ss_pred -----------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+...++++.+++.. .....++|++|+..|+++|..+|.+|+||+
T Consensus 434 ~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE 506 (582)
T 3b60_A 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET
T ss_pred HHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 01223445555555421 112345699999999999999999999997
No 53
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.03 E-value=6.6e-11 Score=106.64 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc-------
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL------- 190 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~------- 190 (237)
...+++++..+..|++++|+|+||+|||||++.+.+..++.+|...+ ..+ +.|+.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~--v~Q~~~lf~~tv 433 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA--VPQETVLFSGTI 433 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEE--ECSSCCCCSEEH
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEE--ECCCCcCcCccH
Confidence 35788899999999999999999999999999999998777775322 122 22221
Q ss_pred ----------CHHHHHHHHHHHCCC-----------C----CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ----------KLERIQEDIGKKIRL-----------P----TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ----------~~~~~~~~il~~~~~-----------~----~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+...+.++..++ . ......++|++|+..|+++|..+|.+|||||
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE 505 (587)
T 3qf4_A 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD 505 (587)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 011122223333222 1 1112345699999999999999999999997
No 54
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.03 E-value=2.3e-11 Score=109.87 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc--------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-------- 190 (237)
..+++++..+..|++++|+|+||+|||||++.|+|..++.+|...+ ..+ +.|+.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~--v~Q~~~l~~~tv~ 435 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGT--VSQEPILFSCSIA 435 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEE--ECSSCCCCSSBHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEE--EccCCcccCCCHH
Confidence 3688899999999999999999999999999999998777774321 122 22211
Q ss_pred ------------CHHHHHHHHHHHCCCCC---------------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ------------KLERIQEDIGKKIRLPT---------------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ------------~~~~~~~~il~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+...++++.+++.+ .....++|++++..|+++|..+|.+|+||+
T Consensus 436 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDE 509 (595)
T 2yl4_A 436 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE 509 (595)
T ss_dssp HHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 11233455666665421 012345599999999999999999999997
No 55
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.01 E-value=1.9e-11 Score=110.04 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc--------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-------- 190 (237)
..+++++..+..|++++|+|+||+|||||++.+.|..++.+|...+ ..+ +.|+.
T Consensus 355 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~--v~Q~~~l~~~tv~ 432 (578)
T 4a82_A 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL--VQQDNILFSDTVK 432 (578)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE--ECSSCCCCSSBHH
T ss_pred cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEE--EeCCCccCcccHH
Confidence 4688899999999999999999999999999999998777775422 122 22221
Q ss_pred ---------CHHHHHHHHHHHCCCC-------C--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 ---------KLERIQEDIGKKIRLP-------T--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 ---------~~~~~~~~il~~~~~~-------~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+...+.++..++. . .....++|++|+..|+++|..+|.+|+|||
T Consensus 433 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE 503 (578)
T 4a82_A 433 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 503 (578)
T ss_dssp HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 0112233344444331 0 011345699999999999999999999997
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.99 E-value=9.6e-11 Score=109.90 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
..++++++.+..|++++|+|+||+|||||+++|+|..++..|
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 467888999999999999999999999999999998765544
No 57
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.98 E-value=1.3e-10 Score=88.31 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=52.2
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHH------------hccccCCCcceEEEEEEeccccCH--HHHH---HHHHHHCC
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQIN------------NNFCYGGHNFDIVIWVVVSKELKL--ERIQ---EDIGKKIR 204 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~------------~~~~~~~~~f~~~~~v~v~~~~~~--~~~~---~~il~~~~ 204 (237)
+.+..|++++|+|+||+|||||++.++ +...+..+.. .+.. .... .......+
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g 73 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQ----------TVTGAAFDVLHYIVSKRLQLG 73 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCG----------GGHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccch----------hhHHHHHHHHHHHHHHHHhCC
Confidence 456778999999999999999999543 3332211110 0000 0111 11112233
Q ss_pred CCC---CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 205 LPT---DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
... .....+++++++..|++++..++.+|+||+
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDE 109 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNL 109 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 321 112234588888999999999999999996
No 58
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.97 E-value=1.8e-11 Score=110.50 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc-----CH--
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL-----KL-- 192 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~-----~~-- 192 (237)
...+++++..+..|++++|+|+||+|||||++.+.+..++.+|...+ . -...+.|+. +.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 447 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence 34788899999999999999999999999999999999777775322 0 011223321 00
Q ss_pred ----------HHHHHHHHHHCCCCC------CC---------cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ----------ERIQEDIGKKIRLPT------DS---------WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ----------~~~~~~il~~~~~~~------~~---------~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+...+.++..++.. .. ...++|++|+..|+++|..+|.+|+||+
T Consensus 448 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDE 517 (598)
T 3qf4_B 448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE 517 (598)
T ss_dssp HHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred HHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 112233333333210 00 1345699999999999999999999997
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.93 E-value=2.2e-10 Score=107.43 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=73.9
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc---eEEEEEEecccc-------CH-------
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF---DIVIWVVVSKEL-------KL------- 192 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f---~~~~~v~v~~~~-------~~------- 192 (237)
.||....++++++.+..|++++|+|+||+|||||+++|++-. +.|.- ... .+.+.++. +.
T Consensus 444 ~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~--i~g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~ 520 (986)
T 2iw3_A 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ--VDGFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFES 520 (986)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC--STTCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTT
T ss_pred EECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--cCCCcccccee-EEEEcccccccccCCcHHHHHHHh
Confidence 356666788899999999999999999999999999998521 11100 000 12222211 11
Q ss_pred ----HHHHHHHHHHCCCCC----C-CcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 193 ----ERIQEDIGKKIRLPT----D-SWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 193 ----~~~~~~il~~~~~~~----~-~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....++++.+|+.. . ....++|++++..|+++|..++.+||||+
T Consensus 521 ~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE 574 (986)
T 2iw3_A 521 GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574 (986)
T ss_dssp CSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred hcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 344567889999841 1 12445699999999999999999999996
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.87 E-value=1.3e-08 Score=86.25 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=75.0
Q ss_pred CcccchHHHHHHHHHHhhc------CCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAE------NAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGK 201 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~------~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~ 201 (237)
..++|++..++.+...+.. +..+.|+|++|+|||||++.+++......+.-...+|+......+....+..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999888874 4789999999999999999999876332210123455555555566777788888
Q ss_pred HCCCCCCCcCCCCHHHHHHHHHHHhhc--CCcEEEecC
Q 044827 202 KIRLPTDSWKNRSIENEARDIYNILRK--KKFLLLLDD 237 (237)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvLDd 237 (237)
.++..... ...+.......+...+.. ++.+|||||
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE 136 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDE 136 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEET
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcC
Confidence 77764221 222344444555555543 488999997
No 61
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.84 E-value=3.1e-09 Score=75.22 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=53.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchh-hHHHHHHhHHHh----hh-hhhhhHHHh
Q 044827 3 VMKVGDVSDLEDKLIALQNELQKLTEVRNDVMRRVVVAEQHY-MMKR-KAQGWKLLKLKL----GN-YKKLNLKKL 71 (237)
Q Consensus 3 ~~~~~~~~~~~~~~~~L~~~l~~l~~~l~d~~~~~~~a~~~~-~~~~-~v~~Wl~~l~~~----ed-l~~~~~~~~ 71 (237)
..|+.++.|++++++.|+++|+.|+++|.| |+.+. +..+ .++.|+.+|+++ || ||++.+...
T Consensus 15 ~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 15 TEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999 76651 2345 999999999999 88 999887654
No 62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.84 E-value=1.2e-09 Score=106.44 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEeccc---------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKE--------- 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~--------- 189 (237)
..+++++..+..|+.++|||++|+|||||++.|.+...+.+|...+ .. .|+|+
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~--~v~Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA--VVSQEPALFNCTIE 509 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE--EECSSCCCCSEEHH
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccc--ccCCcceeeCCchh
Confidence 4588899999999999999999999999999999999887775422 22 22332
Q ss_pred ---------cCHHHHHHHHHHHCCC-------CC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 190 ---------LKLERIQEDIGKKIRL-------PT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 190 ---------~~~~~~~~~il~~~~~-------~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+. +.+.+.++..++ +. .....++|++||..|||++..++.++||||
T Consensus 510 eNI~~g~~~~~~-~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE 580 (1321)
T 4f4c_A 510 ENISLGKEGITR-EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE 580 (1321)
T ss_dssp HHHHTTCTTCCH-HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHhhhcccchH-HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEec
Confidence 122 223334443332 11 112344699999999999999999999997
No 63
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.81 E-value=2.3e-08 Score=85.70 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred CcccchHHHHHHHHHHh-h--------cCCEEEE--EcCCCCcHHHHHHHHHhccccCC--Ccce-EEEEEEeccccCHH
Q 044827 128 RTIVGQQATFQKVLNCL-A--------ENAIIGL--YGSGGVGKTTLLKQINNNFCYGG--HNFD-IVIWVVVSKELKLE 193 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l-~--------~~~vi~I--vG~~G~GKTTL~~~i~~~~~~~~--~~f~-~~~~v~v~~~~~~~ 193 (237)
..++||+..++.+...+ . .+..+.| +|++|+|||||++.+++...... ..+. ..+|+......+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999988887 2 3466777 99999999999999998752210 0112 24566655666778
Q ss_pred HHHHHHHHHCCCCCCCcCCCCHHHHHHHHHHHhh--cCCcEEEecC
Q 044827 194 RIQEDIGKKIRLPTDSWKNRSIENEARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 194 ~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvLDd 237 (237)
.++..++..++..... ...+.......+...+. +++.+||+||
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe 146 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDE 146 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEES
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 8889999988764221 12233444455666554 5788999997
No 64
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.81 E-value=3.5e-09 Score=79.37 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 130 IVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
-||....++.+++.+..|++++|+|+||+|||||++.|++.. +..|.
T Consensus 16 ~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred HHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 356667889999999999999999999999999999999998 77764
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.81 E-value=1.5e-09 Score=99.20 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHH
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLL 164 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~ 164 (237)
...++++++.+..|++++|+||||+|||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4568889999999999999999999999997
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.79 E-value=8.1e-10 Score=107.77 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc--------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-------- 190 (237)
..++++++.+..|+.+||||++|+|||||++.+.+...+.+|..-+ ..+ |+|++
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~--V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI--VSQEPTLFDCSIA 1170 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE--ECSSCCCCSEEHH
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEE--ECCCCEeeCccHH
Confidence 3688899999999999999999999999999999999888885322 112 22221
Q ss_pred -------C----HHHHHHHHHHHCCCC-------C--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -------K----LERIQEDIGKKIRLP-------T--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -------~----~~~~~~~il~~~~~~-------~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ ..+.+.+.++..++. . ....-++|++|+..|||+|..++.+||||+
T Consensus 1171 eNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDE 1243 (1321)
T 4f4c_A 1171 ENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE 1243 (1321)
T ss_dssp HHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 122334445544431 1 111234589999999999999999999996
No 67
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.79 E-value=4e-08 Score=82.15 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc------CHHHHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL------KLERIQEDIGK 201 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~------~~~~~~~~il~ 201 (237)
..++||+.+++.+...+..+..+.|+|+.|+|||||++.+++.. + ..|+...... +...++..+..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHHHHHHHH
Confidence 56899999999999998878999999999999999999999864 1 4555544322 44455555555
Q ss_pred HCCC--------------CC--CCcCCCCHHHHHHHHHHHhhc-CCcEEEecC
Q 044827 202 KIRL--------------PT--DSWKNRSIENEARDIYNILRK-KKFLLLLDD 237 (237)
Q Consensus 202 ~~~~--------------~~--~~~~~~~~~~~~~~l~~~l~~-~~~LlvLDd 237 (237)
.++- .. .........+....+...... ++.+||+||
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe 136 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDE 136 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeC
Confidence 4431 00 000112334444445544442 489999997
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.79 E-value=9.8e-09 Score=86.04 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCcCCCCH
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSWKNRSI 215 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 215 (237)
.++.++..+..+++++|+|+||+|||||++.+.+..++..|.. .+.-........ .-+.+++ -..++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i----~i~~~~e~~~~~----~~~~i~~-----~~ggg 226 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII----SIEDTEEIVFKH----HKNYTQL-----FFGGN 226 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE----EEESSCCCCCSS----CSSEEEE-----ECBTT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE----EECCeecccccc----chhEEEE-----EeCCC
Confidence 6889999999999999999999999999999999986665532 111111100000 0000000 00056
Q ss_pred HHHHHHHHHHhhcCCcEEEecC
Q 044827 216 ENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 216 ~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+.++..|+++|..+|.+|+||+
T Consensus 227 ~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 227 ITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp BCHHHHHHHHTTSCCSEEEECC
T ss_pred hhHHHHHHHHhhhCCCEEEEcC
Confidence 7888899999999999999996
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.78 E-value=9.4e-08 Score=81.15 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=74.3
Q ss_pred CcccchHHHHHHHHHHhhc------CC--EEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAE------NA--IIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDI 199 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~------~~--vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~i 199 (237)
..++|++..++.+...+.. +. .+.|+|++|+|||||++.+++..... ..+ ..+++..+...+.......+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~-~~~-~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK-TTA-RFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS-CCC-EEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh-cCe-eEEEEeCccCCCHHHHHHHH
Confidence 4589999999988888765 15 89999999999999999999977322 112 23455555556677888888
Q ss_pred HHHCCCCCCCcCCCCHHHHHHHHHHHhh--cCCcEEEecC
Q 044827 200 GKKIRLPTDSWKNRSIENEARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvLDd 237 (237)
+..++.... ....+.......+...+. +++.+|+|||
T Consensus 95 ~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE 133 (389)
T 1fnn_A 95 ARSLNIPFP-RRGLSRDEFLALLVEHLRERDLYMFLVLDD 133 (389)
T ss_dssp HHHTTCCCC-SSCCCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred HHHhCccCC-CCCCCHHHHHHHHHHHHhhcCCeEEEEEEC
Confidence 888876422 112234444444555554 4678999997
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.77 E-value=2.2e-09 Score=104.49 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE--E------------EEEEecccc-----C----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI--V------------IWVVVSKEL-----K---- 191 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~--~------------~~v~v~~~~-----~---- 191 (237)
..++++++.+..|++++|+|++|+|||||+++|.+..++.+|...+ . ..-.|.|+. +
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 483 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence 4688999999999999999999999999999999998777775422 0 011233321 0
Q ss_pred --------HHHHHHHH---------HHHCC--CC----CCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 192 --------LERIQEDI---------GKKIR--LP----TDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 192 --------~~~~~~~i---------l~~~~--~~----~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
..+.+.+. +..+. +. ......++|++|+..|+++|..++.+|||||
T Consensus 484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDE 552 (1284)
T 3g5u_A 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE 552 (1284)
T ss_dssp HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 01112222 22221 11 1112345699999999999999999999997
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.75 E-value=2.4e-08 Score=84.80 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=73.2
Q ss_pred CcccchHHHHHHHHHHhhc------CCEEEEEcCCCCcHHHHHHHHHhccccC----CCc-ceEEEEEEecccc-CHHHH
Q 044827 128 RTIVGQQATFQKVLNCLAE------NAIIGLYGSGGVGKTTLLKQINNNFCYG----GHN-FDIVIWVVVSKEL-KLERI 195 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~------~~vi~IvG~~G~GKTTL~~~i~~~~~~~----~~~-f~~~~~v~v~~~~-~~~~~ 195 (237)
..++|++..++.+...+.. +..+.|+|++|+|||||++.+++..... .+. ....+|+...... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 4689999999988877754 4789999999999999999999865221 011 2234566555555 67777
Q ss_pred HHHHHHHC-CCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 196 QEDIGKKI-RLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 196 ~~~il~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+..++..+ +.... ....+.......+...+...+.+|||||
T Consensus 100 ~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~vlilDE 141 (384)
T 2qby_B 100 LSSLAGKLTGFSVP-KHGINLGEYIDKIKNGTRNIRAIIYLDE 141 (384)
T ss_dssp HHHHHHHHHCSCCC-SSSSCTHHHHHHHHHHHSSSCEEEEEET
T ss_pred HHHHHHHhcCCCCC-CCCCCHHHHHHHHHHHhccCCCEEEEEC
Confidence 77777776 43211 1122234444556677776666999997
No 72
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.74 E-value=1.9e-09 Score=104.89 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceE----------------EEEEEecccc--------
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI----------------VIWVVVSKEL-------- 190 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~----------------~~~v~v~~~~-------- 190 (237)
..++++++.+..|++++|+|+||+|||||++.|++..++.+|...+ ..++ .|+.
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v--~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV--SQEPILFDCSIA 1124 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE--ESSCCCCSSBHH
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE--CCCCccccccHH
Confidence 3688999999999999999999999999999999998777664311 1222 2211
Q ss_pred -----------CHHHHHHHHHHHCCC-------CC--------CCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 191 -----------KLERIQEDIGKKIRL-------PT--------DSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 191 -----------~~~~~~~~il~~~~~-------~~--------~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.....+...++..++ +. .....++|++|+..|+++|..+|.+||||+
T Consensus 1125 eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDE 1197 (1284)
T 3g5u_A 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197 (1284)
T ss_dssp HHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEES
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 011122233333222 10 112345699999999999999999999996
No 73
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.73 E-value=7.2e-08 Score=81.69 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=75.1
Q ss_pred CcccchHHHHHHHHHHhh------cCCEEEEEcCCCCcHHHHHHHHHhccccCC---CcceEEEEEEeccccCHHHHHHH
Q 044827 128 RTIVGQQATFQKVLNCLA------ENAIIGLYGSGGVGKTTLLKQINNNFCYGG---HNFDIVIWVVVSKELKLERIQED 198 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~------~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~---~~f~~~~~v~v~~~~~~~~~~~~ 198 (237)
..++|++..++.+...+. .+..+.|+|++|+|||||++.+++...... +.-...+|+......+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 568999999999988873 237899999999999999999998762210 11123455665666677788888
Q ss_pred HHHHCCCCCCCcCCCCHHHHHHHHHHHhh--cCCcEEEecC
Q 044827 199 IGKKIRLPTDSWKNRSIENEARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 199 il~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvLDd 237 (237)
++..++.... ....+.......+...+. +++.+|+|||
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE 138 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDE 138 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEET
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcc
Confidence 8888876422 122234444455666663 3477999997
No 74
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.2e-09 Score=95.35 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC-c-ceE--------------EEEEEeccccCHH----
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH-N-FDI--------------VIWVVVSKELKLE---- 193 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~-~-f~~--------------~~~v~v~~~~~~~---- 193 (237)
...+.++++.+..|++++|+|+||+|||||+++|+|...+..| . ..+ .....+....+..
T Consensus 125 ~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~ 204 (460)
T 2npi_A 125 HFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTW 204 (460)
T ss_dssp HHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTC
T ss_pred hehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhc
Confidence 3445678888999999999999999999999999998866656 4 211 0000000000100
Q ss_pred -----------HHHHHHHHHCCCCCCC--cCCCCHHHHHHHHHHH--hhcCCcE----EEecC
Q 044827 194 -----------RIQEDIGKKIRLPTDS--WKNRSIENEARDIYNI--LRKKKFL----LLLDD 237 (237)
Q Consensus 194 -----------~~~~~il~~~~~~~~~--~~~~~~~~~~~~l~~~--l~~~~~L----lvLDd 237 (237)
.....+++.+|+.... ...++|++++..|+++ |..++.+ ||||+
T Consensus 205 ~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 205 GQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp SCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred ccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 1112233344443211 1122489999999999 9999999 99996
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.70 E-value=4.3e-09 Score=90.54 Aligned_cols=103 Identities=11% Similarity=0.041 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhcCC--------------------EEEEEcCCCCcHHHHHHHHHhccccCCCcceE---------EEE-
Q 044827 134 QATFQKVLNCLAENA--------------------IIGLYGSGGVGKTTLLKQINNNFCYGGHNFDI---------VIW- 183 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~--------------------vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~---------~~~- 183 (237)
...+++++..+..|+ +++|+|+||+|||||++.|.|..++.+|.... .++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 357889999999998 99999999999999999999987665553210 010
Q ss_pred ------EEeccccC---HHHHHHHHHHHCCCCCCCc--CCCCH--HHHHHHHHHHhhc----------CCcEEEec
Q 044827 184 ------VVVSKELK---LERIQEDIGKKIRLPTDSW--KNRSI--ENEARDIYNILRK----------KKFLLLLD 236 (237)
Q Consensus 184 ------v~v~~~~~---~~~~~~~il~~~~~~~~~~--~~~~~--~~~~~~l~~~l~~----------~~~LlvLD 236 (237)
+++.+... ......++++.+++..... ..+.+ ++++..|+++|.. ++.+++||
T Consensus 116 ~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD 191 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITN 191 (413)
T ss_dssp CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH
T ss_pred ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccC
Confidence 11111111 1223567788887753211 12234 7888889999987 55555555
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.68 E-value=6.9e-09 Score=79.30 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|+|+||+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 77
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.60 E-value=1.8e-08 Score=92.11 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~ 168 (237)
..++++++.+..|++++|+|+||+|||||++.+.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4688888899999999999999999999997653
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.59 E-value=6.8e-08 Score=78.23 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC-CCcceEEEE-E-EeccccCHHHHHHHHH--HHCCCCCCC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG-GHNFDIVIW-V-VVSKELKLERIQEDIG--KKIRLPTDS 209 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~-~~~f~~~~~-v-~v~~~~~~~~~~~~il--~~~~~~~~~ 209 (237)
..+++++ +..|++++|+|+||+|||||++.+.+...+. .|.+...-. + .+.+... .++ ..+++..
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~------~~v~q~~~gl~~-- 84 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK------SIVNQREVGEDT-- 84 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS------SEEEEEEBTTTB--
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc------eeeeHHHhCCCH--
Confidence 5778877 7888999999999999999999999988554 564321100 0 0000000 000 0122211
Q ss_pred cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 210 WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
...+..|+++|..+|.+|++|+
T Consensus 85 ------~~l~~~la~aL~~~p~illlDE 106 (261)
T 2eyu_A 85 ------KSFADALRAALREDPDVIFVGE 106 (261)
T ss_dssp ------SCHHHHHHHHHHHCCSEEEESC
T ss_pred ------HHHHHHHHHHHhhCCCEEEeCC
Confidence 1236778999888999999986
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.52 E-value=5.4e-08 Score=76.69 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...++++++.+..|++++|+||||+|||||++.|.+..
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35688999999999999999999999999999999977
No 80
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.50 E-value=3.3e-07 Score=72.08 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=42.9
Q ss_pred HHHHHH-HHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc--CCCc-ceEEEEEEeccccCHHHHHHHHHHHCCCC
Q 044827 136 TFQKVL-NCLAENAIIGLYGSGGVGKTTLLKQINNNFCY--GGHN-FDIVIWVVVSKELKLERIQEDIGKKIRLP 206 (237)
Q Consensus 136 ~~~~i~-~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~--~~~~-f~~~~~v~v~~~~~~~~~~~~il~~~~~~ 206 (237)
.++.+. .-+..|++++|+|+||+|||||++.+++...+ ..+. -...+|+.-...+.. ..+..+++.+++.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~-~~i~~~~~~~~~~ 86 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP-ERIREIAQNRGLD 86 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH-HHHHHHHHHTTSC
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH-HHHHHHHHHcCCC
Confidence 444443 35667799999999999999999999985422 2221 223455543332232 2345556666653
No 81
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.50 E-value=8.6e-07 Score=74.08 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++||+.+++.+.. +.. .++.|+|+.|+|||||++.+.+..
T Consensus 13 ~~~~gR~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 568999999999999 776 799999999999999999999865
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.46 E-value=1.1e-07 Score=80.03 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=39.9
Q ss_pred cCcccc-hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC
Q 044827 127 ERTIVG-QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG 174 (237)
Q Consensus 127 ~~~~~g-~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~ 174 (237)
.+..|+ ....++.+ +.+..|++++|+|+||+|||||++.|++...+.
T Consensus 51 l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 51 IDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344565 55789999 999999999999999999999999999988544
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.45 E-value=7.8e-08 Score=77.02 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-|....++++++.+..+.+++|+|+||+|||||++.|.+..
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35667899999999999999999999999999999999865
No 84
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.45 E-value=2.3e-07 Score=76.67 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=29.2
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
+..+++++|+|+||+|||||++.|++...+..|.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~ 130 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 130 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence 4457899999999999999999999998666554
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.43 E-value=4.7e-07 Score=76.46 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=29.0
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
+..+++++|+|+||+|||||++.|++...+..|.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~ 187 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 187 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCE
Confidence 3456899999999999999999999998665554
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.41 E-value=1e-06 Score=69.22 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.2
Q ss_pred HHHHHHHH-HhhcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 135 ATFQKVLN-CLAENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 135 ~~~~~i~~-~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
..++++.. -+..|++++|+|+||+|||||++.+++...+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34555554 5677899999999999999999999977633
No 87
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.40 E-value=1.3e-06 Score=68.21 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHH-HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCC----
Q 044827 135 ATFQKVLN-CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDS---- 209 (237)
Q Consensus 135 ~~~~~i~~-~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~---- 209 (237)
..++.+.. -+..|++++|+|++|+|||||++.+++ . . + ....|+.....++...+ ..++..+++....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~-~--~--~~v~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-L-S--G--KKVAYVDTEGGFSPERL-VQMAETRGLNPEEALSR 79 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-H-H--C--SEEEEEESSCCCCHHHH-HHHHHTTTCCHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-H-c--C--CcEEEEECCCCCCHHHH-HHHHHhcCCChHHHhhc
Confidence 35556554 567789999999999999999999998 2 2 1 23455555443444333 3455555442100
Q ss_pred ---cCCCCHH--HHHHHHHHHhhc-CCcEEEecC
Q 044827 210 ---WKNRSIE--NEARDIYNILRK-KKFLLLLDD 237 (237)
Q Consensus 210 ---~~~~~~~--~~~~~l~~~l~~-~~~LlvLDd 237 (237)
....+++ .+....++.+.. ++.+||+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~ 113 (220)
T 2cvh_A 80 FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDS 113 (220)
T ss_dssp EEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEEC
T ss_pred EEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcC
Confidence 1112222 223334445554 488999995
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.40 E-value=8e-07 Score=73.03 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
..++++...+..|++++|+|+||+|||||++.+++...+..|
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 368888888999999999999999999999999998855545
No 89
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.38 E-value=2.4e-07 Score=76.47 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+++++..+..|++++|+|+||+|||||+++|.+..
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 56899999999999999999999999999999999875
No 90
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.38 E-value=2.9e-07 Score=79.92 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=40.4
Q ss_pred Ccccc-hHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 128 RTIVG-QQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 128 ~~~~g-~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
+..|+ ....++.+ +.+..|++++|+|+||+|||||++.|++...+..|
T Consensus 138 ~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 138 EHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred ceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 34455 45789999 99999999999999999999999999998855433
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.38 E-value=8.1e-07 Score=67.48 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHh-----hcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 133 QQATFQKVLNCL-----AENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 133 ~~~~~~~i~~~l-----~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
....++.+...+ ..++.+.|+|++|+|||||++.+++...+..|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 344555554444 34689999999999999999999998743344
No 92
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.32 E-value=2e-06 Score=67.50 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHhhcCC---EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAENA---IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~---vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+..+. .+.|+|++|+|||||++.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999988764 89999999999999999998876
No 93
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.32 E-value=3.1e-07 Score=71.60 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+..|++++|+|+||+|||||+++|.+..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 367889999999999999999999999987
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.30 E-value=8.8e-07 Score=65.48 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=25.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
.++.++|+|++|+|||||++.+++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999998743
No 95
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.28 E-value=5.1e-07 Score=76.52 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 138 QKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 138 ~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
+.++..+..|++++|+|++|+|||||++.+.+..++..|.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 8899999999999999999999999999999998665553
No 96
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.26 E-value=1.4e-07 Score=87.57 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHH-HHh
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQ-INN 169 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~-i~~ 169 (237)
.+++++..+..|++++|+|+||+|||||++. +++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 4667777788889999999999999999996 654
No 97
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.26 E-value=2.9e-07 Score=86.25 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLL 164 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~ 164 (237)
..+++++..+..|++++|+|+||+|||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 347788888888999999999999999997
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.25 E-value=3.9e-06 Score=74.58 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=57.3
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCC-------------C-
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLP-------------T- 207 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~-------------~- 207 (237)
..+..|++++|+|+||+|||||++.+++...+ .|. ..+++.. ++ ....+.. .+..++++ .
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~--~vi~~~~-ee-~~~~l~~-~~~~~g~~~~~~~~~g~~~~~~~ 349 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACA-NKE--RAILFAY-EE-SRAQLLR-NAYSWGMDFEEMERQNLLKIVCA 349 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTC--CEEEEES-SS-CHHHHHH-HHHTTSCCHHHHHHTTSEEECCC
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCC--CEEEEEE-eC-CHHHHHH-HHHHcCCCHHHHHhCCCEEEEEe
Confidence 35667799999999999999999999998744 343 1223322 22 1222222 12223321 0
Q ss_pred CCcCCCCHHHHHHHHHHHhhcCCcEEEec
Q 044827 208 DSWKNRSIENEARDIYNILRKKKFLLLLD 236 (237)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~~~~LlvLD 236 (237)
.....+.+++++..+++++..++.+||+|
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD 378 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID 378 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 01122457888889999999999999998
No 99
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.25 E-value=2.5e-06 Score=72.07 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG 174 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~ 174 (237)
+|....+.++ ....+.+++|+|++|+|||||++.+.+...+.
T Consensus 109 lg~~~~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 109 LGMGEVFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp TTCCHHHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 4544556655 34566899999999999999999999988554
No 100
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.25 E-value=4.6e-06 Score=69.60 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=28.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
..+++++|+|+||+||||+++.|++...+..|.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~ 159 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFS 159 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 356999999999999999999999998766664
No 101
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.25 E-value=3.6e-06 Score=66.66 Aligned_cols=101 Identities=13% Similarity=0.238 Sum_probs=57.7
Q ss_pred HHHHHH-HHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCC-CcceEEEEEEeccccCHHHHHHHHHHHCCCCCC---
Q 044827 136 TFQKVL-NCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGG-HNFDIVIWVVVSKELKLERIQEDIGKKIRLPTD--- 208 (237)
Q Consensus 136 ~~~~i~-~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~-~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~--- 208 (237)
.++.+. .-+..|++++|+|++|+|||||++.+++.. ++.. +.-...+|+.....+.... +..++..++....
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~-~~~~~~~~g~~~~~~~ 90 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER-LLAVAERYGLSGSDVL 90 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH-HHHHHHHcCCCHHHHh
Confidence 444444 346677999999999999999999999842 1110 1123456665554334433 3455666665421
Q ss_pred -C---cCCCCHHHHHH---HHHHHhh-cCCcEEEecC
Q 044827 209 -S---WKNRSIENEAR---DIYNILR-KKKFLLLLDD 237 (237)
Q Consensus 209 -~---~~~~~~~~~~~---~l~~~l~-~~~~LlvLDd 237 (237)
. ....+..+... .+...+. .++.+||+|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~ 127 (243)
T 1n0w_A 91 DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDS 127 (243)
T ss_dssp HTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred hCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 0 01223333222 2334443 5788999995
No 102
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.24 E-value=1.3e-06 Score=75.06 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++++...+..| +++|+|+||+|||||+++|+...
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 455566666777 99999999999999999997665
No 103
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.23 E-value=6.4e-07 Score=69.29 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=24.9
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..|++++|+||||+|||||++.|.+..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4567999999999999999999999975
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.22 E-value=3.3e-06 Score=71.18 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=58.8
Q ss_pred HHHHHH-HHhhcCCEEEEEcCCCCcHHHHHHHHHhcc--ccCCCcce-EEEEEEeccccCHHHHHHHHHHHCCCCCCC--
Q 044827 136 TFQKVL-NCLAENAIIGLYGSGGVGKTTLLKQINNNF--CYGGHNFD-IVIWVVVSKELKLERIQEDIGKKIRLPTDS-- 209 (237)
Q Consensus 136 ~~~~i~-~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~--~~~~~~f~-~~~~v~v~~~~~~~~~~~~il~~~~~~~~~-- 209 (237)
.++.+. .-+..|+++.|+|++|+|||||++.+++.. ++..|... ..+|+.....+.. ..+..+.+.+++....
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~-~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP-ERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH-HHHHHHHHTTTCCHHHHG
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH-HHHHHHHHHcCCCHHHHh
Confidence 445543 456778999999999999999999999976 23332111 3366655443333 3334556666553210
Q ss_pred -----cCC--CCHHHHHHHHHHHhh-------cCCcEEEecC
Q 044827 210 -----WKN--RSIENEARDIYNILR-------KKKFLLLLDD 237 (237)
Q Consensus 210 -----~~~--~~~~~~~~~l~~~l~-------~~~~LlvLDd 237 (237)
... ...+.+...++..+. .++.+||+|.
T Consensus 198 ~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs 239 (349)
T 1pzn_A 198 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239 (349)
T ss_dssp GGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred hCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence 011 122333333444443 5788999995
No 105
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.21 E-value=6.8e-07 Score=76.97 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHhhcCCE--EEEEcCCCCcHHHHHHHHHhcc
Q 044827 130 IVGQQATFQKVLNCLAENAI--IGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~v--i~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.||... ++++++.+..|.+ ++|+|+||+|||||++.|+|..
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 455555 9999999999999 9999999999999999999973
No 106
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.20 E-value=9.5e-07 Score=74.12 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
|+....+++++..+..+.+++|+|+||+|||||++.+.+...+..|.
T Consensus 39 ~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~ 85 (337)
T 2qm8_A 39 AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK 85 (337)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCE
Confidence 45567889999999999999999999999999999999877554443
No 107
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.20 E-value=1.1e-06 Score=81.11 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccc-cCCCcceE--EEEEEeccccCHHHHHHHHHHHCCCCCCCc-CCCCHHHHHHHH
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFC-YGGHNFDI--VIWVVVSKELKLERIQEDIGKKIRLPTDSW-KNRSIENEARDI 222 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~-~~~~~f~~--~~~v~v~~~~~~~~~~~~il~~~~~~~~~~-~~~~~~~~~~~l 222 (237)
|++++|+||||+|||||++.+++... +..|.|-. ...+.+-. +++..++...... ..+.++.....+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~---------~i~~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFD---------GIYTRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCS---------EEEEECCC------CCSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHH---------HhhccCCHHHHHHhcccHHHHHHHHH
Confidence 79999999999999999999998752 34554421 11111000 0122222221111 112355566677
Q ss_pred HHHh--hcCCcEEEecC
Q 044827 223 YNIL--RKKKFLLLLDD 237 (237)
Q Consensus 223 ~~~l--~~~~~LlvLDd 237 (237)
+.++ ..++.|++||+
T Consensus 647 a~il~~a~~p~LlLLDE 663 (765)
T 1ewq_A 647 ALILKEATENSLVLLDE 663 (765)
T ss_dssp HHHHHHCCTTEEEEEES
T ss_pred HHHHHhccCCCEEEEEC
Confidence 8877 78999999996
No 108
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.20 E-value=1.6e-06 Score=71.87 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=28.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccc--cCCCc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFC--YGGHN 177 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~--~~~~~ 177 (237)
..+.+++|+|+||+|||||++.|.+... +..|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 5668999999999999999999999875 45554
No 109
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.19 E-value=8.7e-07 Score=74.21 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHhhcC-------CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN-------AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~-------~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.++|.+..++.+...+..+ +.+.|+||+|+|||||+++|++..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45789889999999988754 789999999999999999999976
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.18 E-value=1.5e-06 Score=72.12 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=55.2
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEecccc-C-------------------HHHHHHHHHHHC
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKEL-K-------------------LERIQEDIGKKI 203 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~-~-------------------~~~~~~~il~~~ 203 (237)
+..+.+++|+|+||+|||||++.|.+...+..|.-. ..++.....+ . ....+.++++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~-v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR-VDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCC-EEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCe-EEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 456799999999999999999999998866544311 1222211110 0 012334455555
Q ss_pred CCCCCC----cCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 204 RLPTDS----WKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 204 ~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
+ .... ...+.|++++..+++++..++.+||||+
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDe 202 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEG 202 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEEC
T ss_pred C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECC
Confidence 4 1111 1122356666667777778888899885
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.17 E-value=8e-06 Score=63.20 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+..+ ..+.|+|+.|+|||||++.++...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999988876 359999999999999999998865
No 112
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.15 E-value=5.1e-07 Score=71.51 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHH-hcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQIN-NNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~-~~~ 171 (237)
...+++++.+..|++++|+||||+|||||++.|. +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3466778888899999999999999999999999 765
No 113
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.14 E-value=1.1e-05 Score=66.47 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=49.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEec-cccCHHHHHHHHHHHCCCCCCCcCCCCHHHHHHHHHH
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVS-KELKLERIQEDIGKKIRLPTDSWKNRSIENEARDIYN 224 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~-~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~ 224 (237)
.+.+++|+|+||+||||++..+++...+..|. .+..+... ......+.+....+..+++... ..+....+..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~~~~~~l~~al~~ 179 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--KIAFITTDTYRIAAVEQLKTYAELLQAPLEV--CYTKEEFQQAKEL 179 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--CEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--CSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--EEEEEecCcccchHHHHHHHHHHhcCCCeEe--cCCHHHHHHHHHH
Confidence 35899999999999999999999988444552 11122211 1222333444555556654321 1234444444553
Q ss_pred HhhcCCcEEEec
Q 044827 225 ILRKKKFLLLLD 236 (237)
Q Consensus 225 ~l~~~~~LlvLD 236 (237)
+ .+..++|+|
T Consensus 180 ~--~~~dlvIiD 189 (296)
T 2px0_A 180 F--SEYDHVFVD 189 (296)
T ss_dssp G--GGSSEEEEE
T ss_pred h--cCCCEEEEe
Confidence 2 566788887
No 114
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.13 E-value=7.7e-07 Score=83.32 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHH
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQI 167 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i 167 (237)
.+++++..+..|++++|+|+||+|||||++.+
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 46777788888999999999999999999985
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.12 E-value=9.9e-07 Score=68.73 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=30.0
Q ss_pred HHHHHHHHh----hcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 136 TFQKVLNCL----AENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 136 ~~~~i~~~l----~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
.++.+...+ ..+++++|+|+||+|||||++.|.+...+
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 444554444 34689999999999999999999998843
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.12 E-value=1.2e-06 Score=66.95 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.1
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.+..|++++|+|+||+|||||++.|++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567899999999999999999999996
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.2e-05 Score=66.74 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=64.3
Q ss_pred ccchHHHHHHHHHHhhc------CCEEEEEcCCCCcHHHHHHHHHhccccCCC--cceE--EEEEEeccccCHHHHHHHH
Q 044827 130 IVGQQATFQKVLNCLAE------NAIIGLYGSGGVGKTTLLKQINNNFCYGGH--NFDI--VIWVVVSKELKLERIQEDI 199 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~------~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~--~f~~--~~~v~v~~~~~~~~~~~~i 199 (237)
+.+|+.+++.+...|.. +..+-|+|++|+|||++++.++........ .... .+.+......+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 67899988888877653 378899999999999999999988743221 1111 2333333445666777888
Q ss_pred HHHCCCCCCCcCCCCHHHHHHHHHHH--hhcCCcEEEecC
Q 044827 200 GKKIRLPTDSWKNRSIENEARDIYNI--LRKKKFLLLLDD 237 (237)
Q Consensus 200 l~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvLDd 237 (237)
++++.... .......+.....+... -.+++.+++||+
T Consensus 102 ~~~L~g~~-~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE 140 (318)
T 3te6_A 102 WFAISKEN-LCGDISLEALNFYITNVPKAKKRKTLILIQN 140 (318)
T ss_dssp HHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEEC
T ss_pred HHHhcCCC-CCchHHHHHHHHHHHHhhhccCCceEEEEec
Confidence 88774321 11112233333333322 135678999996
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.11 E-value=1.7e-06 Score=68.06 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=25.4
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
....|++++|+||||+|||||++.|.+..+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346679999999999999999999999874
No 119
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.11 E-value=1.8e-06 Score=75.49 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=28.5
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
+..+.+++|+|+||+|||||++.|++...+..|.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~ 323 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKS 323 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCe
Confidence 3446899999999999999999999988655554
No 120
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.10 E-value=1.9e-06 Score=65.93 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
++++|+||||+|||||++.|.+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999998764
No 121
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.10 E-value=5.9e-06 Score=68.29 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=50.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC--HHHHHHHHHHHCCCCCCCcCCCCHHHHH---H
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK--LERIQEDIGKKIRLPTDSWKNRSIENEA---R 220 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~--~~~~~~~il~~~~~~~~~~~~~~~~~~~---~ 220 (237)
.+.+++|+|+||+||||++..+++...+..+.. .++.. +.+. ....+...++.++++.-. ...+++..+ .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV---~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~-~~s~~~~~~v~~~ 177 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV---VLAAA-DTFRAAAIEQLKIWGERVGATVIS-HSEGADPAAVAFD 177 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE---EEEEE-CTTCHHHHHHHHHHHHHHTCEEEC-CSTTCCHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE---EEEcc-ccccHHHHHHHHHHHHHcCCcEEe-cCCccCHHHHHHH
Confidence 358999999999999999999999884433322 12211 1121 222334556666654211 111222222 2
Q ss_pred HHHHHhhcCCcEEEec
Q 044827 221 DIYNILRKKKFLLLLD 236 (237)
Q Consensus 221 ~l~~~l~~~~~LlvLD 236 (237)
.+++++..++.++|+|
T Consensus 178 al~~a~~~~~dvvIiD 193 (306)
T 1vma_A 178 AVAHALARNKDVVIID 193 (306)
T ss_dssp HHHHHHHTTCSEEEEE
T ss_pred HHHHHHhcCCCEEEEE
Confidence 5777777788888888
No 122
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.09 E-value=8.6e-07 Score=83.25 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHH
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQI 167 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i 167 (237)
.+++++..+..|++++|+|+||+|||||++.+
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 46777888888999999999999999999985
No 123
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.08 E-value=2.5e-05 Score=63.89 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=36.4
Q ss_pred CcccchHHHHHHHHHHhh--------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. .+.-+.|+|++|+||||+++.+++..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 457888888888777662 24789999999999999999999865
No 124
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.08 E-value=1.4e-06 Score=67.02 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
|++++|+|+||+|||||++.|++..+ .+|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 36899999999999999999999874 555
No 125
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.07 E-value=1.9e-06 Score=81.01 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.4
Q ss_pred HHHHHhhcCCEEEEEcCCCCcHHHHHHHH
Q 044827 139 KVLNCLAENAIIGLYGSGGVGKTTLLKQI 167 (237)
Q Consensus 139 ~i~~~l~~~~vi~IvG~~G~GKTTL~~~i 167 (237)
+++..+..|++++|+||||+||||+++.+
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 34444556799999999999999999998
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.04 E-value=2.1e-06 Score=66.47 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+++|+||||+|||||++.+.+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999865
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=1.4e-05 Score=64.94 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHhh---------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA---------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~---------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..++.+...+. .+.-+.|+|++|+|||||++.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 457899888888877662 34779999999999999999999865
No 128
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.03 E-value=2.9e-06 Score=68.14 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHhhc---CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 132 GQQATFQKVLNCLAE---NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 132 g~~~~~~~i~~~l~~---~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+....++++++.+.. +.+|+|+|++|+||||+++.+.+..
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 556789999999999 9999999999999999999998854
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.03 E-value=2e-05 Score=67.55 Aligned_cols=102 Identities=14% Similarity=0.228 Sum_probs=57.5
Q ss_pred HHHHHHH-HHhhcCCEEEEEcCCCCcHHHHHHHHH--hccccCCC-cceEEEEEEeccccCHHHHHHHHHHHCCCCCC--
Q 044827 135 ATFQKVL-NCLAENAIIGLYGSGGVGKTTLLKQIN--NNFCYGGH-NFDIVIWVVVSKELKLERIQEDIGKKIRLPTD-- 208 (237)
Q Consensus 135 ~~~~~i~-~~l~~~~vi~IvG~~G~GKTTL~~~i~--~~~~~~~~-~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~-- 208 (237)
..++.+. .-+..|+++.|+|++|+|||||+..++ ...++..| .-...+|+.....+.... ++.+++.+++...
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~v 243 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDA 243 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhH
Confidence 3444443 345567999999999999999999654 33322222 223456665554444443 4557777876422
Q ss_pred -----CcCCCCHHHHHHHHH---HHh-hcCCcEEEecC
Q 044827 209 -----SWKNRSIENEARDIY---NIL-RKKKFLLLLDD 237 (237)
Q Consensus 209 -----~~~~~~~~~~~~~l~---~~l-~~~~~LlvLDd 237 (237)
.....+...+...+. ..+ ..++.+||+|.
T Consensus 244 leni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 244 LNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred hhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 011223333222222 222 35678999984
No 130
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.03 E-value=3.4e-06 Score=69.69 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
+++++|+|+||+|||||++.+++...+..|.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~ 132 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKK 132 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCE
Confidence 5899999999999999999999998666553
No 131
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.01 E-value=2.4e-06 Score=69.39 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
.++|+|+||+|||||++.|+|...+..|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 5899999999999999999998866655
No 132
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.01 E-value=2.8e-06 Score=66.09 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=24.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.+++|+|++|+|||||++.|.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999976
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=3.6e-06 Score=65.03 Aligned_cols=38 Identities=26% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...++++++.+..+.+|.|+|++|+||||+++.+....
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34677888888889999999999999999999999765
No 134
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.00 E-value=3.1e-06 Score=67.27 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=24.3
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHH
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~ 168 (237)
-+..|++++|+|+||+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 46778999999999999999999999
No 135
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.00 E-value=5.7e-06 Score=73.10 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
...++.+...+..+..++|+|++|+|||||++.+.+..++..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence 4567888888999999999999999999999999999866555
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.99 E-value=4e-06 Score=63.72 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|++++|+||+|+|||||++.+.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46899999999999999999999876
No 137
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.97 E-value=2.6e-05 Score=63.42 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=25.7
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..|++++|+|+||+|||||+..+++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6788999999999999999999999865
No 138
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.97 E-value=4.7e-06 Score=64.38 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
..+........+.+|+|+|++|+||||+++.+.+... ..|.
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 3455556667789999999999999999999999873 4443
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.96 E-value=5.2e-05 Score=60.68 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=32.5
Q ss_pred CcccchHHHHHHHHHHh---hc-----------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCL---AE-----------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l---~~-----------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+ .. ..-+.|+|++|+|||||++.+++..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45778776665554432 21 2568899999999999999999876
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.94 E-value=5.2e-06 Score=64.12 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=25.0
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..|.+++|+|++|+||||+++.|.+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999999876
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.94 E-value=3.8e-06 Score=74.60 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=39.3
Q ss_pred ccchHHHHHHHHH-HhhcCCEEEEEcCCCCcHHHHHHH--HHhccccCCC
Q 044827 130 IVGQQATFQKVLN-CLAENAIIGLYGSGGVGKTTLLKQ--INNNFCYGGH 176 (237)
Q Consensus 130 ~~g~~~~~~~i~~-~l~~~~vi~IvG~~G~GKTTL~~~--i~~~~~~~~~ 176 (237)
+.+....+++++. .+..|++++|+|+||+|||||++. +.+..++..|
T Consensus 21 ~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g 70 (525)
T 1tf7_A 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP 70 (525)
T ss_dssp ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3445568999999 999999999999999999999999 6787744444
No 142
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.94 E-value=4.9e-06 Score=72.78 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
.+++++..+.. ++++|+|+||+|||||+++|++..++..|.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 34556667778 999999999999999999999998776664
No 143
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=8.1e-06 Score=67.87 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHHhhcCC------EEEEEcCCCCcHHHHHHHHHhccc
Q 044827 130 IVGQQATFQKVLNCLAENA------IIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~~~~------vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.+|....+..+...+.... +++|.|++|+|||||++.|.+...
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3566677777777776654 999999999999999999998873
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.93 E-value=5.7e-06 Score=63.92 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+.+++|+|++|+|||||++.|.+..
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457999999999999999999999865
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=1.4e-05 Score=60.24 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+..+ ..+.|+|+.|+|||||++.++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999988765 678999999999999999998875
No 146
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.90 E-value=1.2e-05 Score=67.67 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-cCCCc
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC-YGGHN 177 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-~~~~~ 177 (237)
++++... ..|++++|+|+||+|||||++.|.+... +..|.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 4455443 4689999999999999999999999886 55554
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=1.1e-05 Score=67.47 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHhhcCCE--EEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAENAI--IGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~v--i~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..++.+...+..+++ +.++||+|+||||+++.+++..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999876 9999999999999999999876
No 148
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.88 E-value=1e-05 Score=69.70 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
...++++ . ...+++++|+|+||+|||||++.+.+...+..|+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~ 197 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 197 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCE
Confidence 3456666 2 3567899999999999999999999988665564
No 149
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.88 E-value=0.00013 Score=60.04 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=34.7
Q ss_pred CcccchHHHHHHHHHHhh---------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA---------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~---------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. .+..+.|+|++|+|||||++.+++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 357787777666665543 34789999999999999999999965
No 150
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.87 E-value=0.00022 Score=59.99 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=58.0
Q ss_pred HHHHHHHH--HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc--
Q 044827 135 ATFQKVLN--CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW-- 210 (237)
Q Consensus 135 ~~~~~i~~--~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~-- 210 (237)
..++.+.. -+..|.++.|.|++|+|||||+..++....+..+ .++|+.....++.. .++++++.....
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg---~VlyId~E~s~~~~-----ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG---VAAFIDAEHALDPV-----YAKNLGVDLKSLLI 118 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCCCHH-----HHHHHTCCGGGCEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEecccccchH-----HHHHcCCchhhhhh
Confidence 45555543 4556699999999999999999999987633222 24556554444443 455566643221
Q ss_pred -CCCCHHHHHHHHHHHhh-cCCcEEEecC
Q 044827 211 -KNRSIENEARDIYNILR-KKKFLLLLDD 237 (237)
Q Consensus 211 -~~~~~~~~~~~l~~~l~-~~~~LlvLDd 237 (237)
...+.++....+...+. .++.++|+|.
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~dlvVIDS 147 (356)
T 3hr8_A 119 SQPDHGEQALEIVDELVRSGVVDLIVVDS 147 (356)
T ss_dssp ECCSSHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred hhccCHHHHHHHHHHHhhhcCCCeEEehH
Confidence 22345544444444443 5678899984
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=2.6e-05 Score=64.26 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+..+ ..+.|+|+.|+||||+++.++...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45789999999999998876 239999999999999999999865
No 152
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.84 E-value=6.6e-07 Score=83.94 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
+..|++++|+||||+|||||++.+...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 345689999999999999999998653
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.84 E-value=1.8e-05 Score=61.12 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhh-----cCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 134 QATFQKVLNCLA-----ENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 134 ~~~~~~i~~~l~-----~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
...++.+...+. .+.+++|+|++|+||||+++.+.+...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 344555555444 3489999999999999999999987643
No 154
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.84 E-value=8.9e-07 Score=84.17 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcccc--CCCcce--EEEEEEeccccCHHHHHHHHHHHCCCCCCCcC---CCCHHHHH
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCY--GGHNFD--IVIWVVVSKELKLERIQEDIGKKIRLPTDSWK---NRSIENEA 219 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~--~~~~f~--~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~~---~~~~~~~~ 219 (237)
|++++|+||||+|||||++.+ |.... ..|.|- -...+++.+. ++..+|+.+.... ...++...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d~---------I~~rig~~d~~~~~~stf~~em~~ 858 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPIDR---------VFTRLGASDRIMSGESTFFVELSE 858 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCSB---------EEEECC---------CHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHHH---------HHHHcCCHHHHhhchhhhHHHHHH
Confidence 689999999999999999999 76521 123121 0112222211 1223333221111 11234444
Q ss_pred HHHHHHhhcCCcEEEecC
Q 044827 220 RDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 220 ~~l~~~l~~~~~LlvLDd 237 (237)
..++..+..++.|||||+
T Consensus 859 ~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp HHHHHHHCCTTCEEEEEC
T ss_pred HHHHHHhCCCCcEEEEEC
Confidence 667777888899999996
No 155
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.84 E-value=1.1e-05 Score=62.81 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
..|.+++|+||+|+|||||++.+.+..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999998763
No 156
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.83 E-value=4.2e-05 Score=61.15 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=32.6
Q ss_pred CcccchHHHHHHHHHHh---h-----------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCL---A-----------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l---~-----------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+ . ...-+.|+|++|+||||+++.+++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35678777666654443 2 12457899999999999999999865
No 157
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.83 E-value=4.4e-06 Score=70.75 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=30.8
Q ss_pred HHHHHhhc--CCEEEEEcCCCCcHHHHHHHHHhccccCC
Q 044827 139 KVLNCLAE--NAIIGLYGSGGVGKTTLLKQINNNFCYGG 175 (237)
Q Consensus 139 ~i~~~l~~--~~vi~IvG~~G~GKTTL~~~i~~~~~~~~ 175 (237)
.+...+.. ++.++|+|+||+|||||++.|++...+..
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 35555666 79999999999999999999999886554
No 158
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.83 E-value=9e-06 Score=62.06 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
++++|+|+||+|||||++.+.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 58999999999999999999873
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.82 E-value=2e-05 Score=59.31 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+..+ ..+.|+|+.|+|||||++.++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999888764 678999999999999999998876
No 160
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=1.3e-05 Score=66.06 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=27.6
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF 178 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f 178 (237)
...+++++|+|+||+|||||++.|.+...+..|..
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 34579999999999999999999999886666643
No 161
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.81 E-value=5.9e-06 Score=67.24 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 044827 150 IGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 150 i~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.|+||||+|||||++.|++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999976
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.80 E-value=9.2e-05 Score=64.78 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=52.7
Q ss_pred CcccchHHHHHHHHHH---hhc-----------CCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHH
Q 044827 128 RTIVGQQATFQKVLNC---LAE-----------NAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLE 193 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~---l~~-----------~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~ 193 (237)
..+.|.+...+.+... +.. ..-+.|+||+|+|||||++.+++.. . ..| +.++.+.-.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-~--~~f---~~is~~~~~--- 86 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-N--VPF---FHISGSDFV--- 86 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-T--CCE---EEEEGGGTT---
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-C--CCe---eeCCHHHHH---
Confidence 3567777665444433 322 1458899999999999999999965 1 112 122221110
Q ss_pred HHHHHHHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 194 RIQEDIGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 194 ~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
. .+...+....+..+..+..+.+.+|+|||
T Consensus 87 -------~-------~~~g~~~~~~r~lf~~A~~~~p~ILfIDE 116 (476)
T 2ce7_A 87 -------E-------LFVGVGAARVRDLFAQAKAHAPCIVFIDE 116 (476)
T ss_dssp -------T-------CCTTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred -------H-------HHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 0 01111244555667778888899999996
No 163
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.80 E-value=1.9e-05 Score=67.13 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 134 QATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 134 ~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+++++..+..+++++|+|++|+|||||++.+++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35678888888889999999999999999999999854
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.79 E-value=2.1e-05 Score=70.98 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=42.5
Q ss_pred CcccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 128 RTIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
..++|....++.+...+..++.+.|+|++|+|||||++.|++...+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3579999999999999999999999999999999999999998743
No 165
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.78 E-value=6.1e-06 Score=65.87 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH---hcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQIN---NNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~---~~~ 171 (237)
+.+++|+|+||+|||||++.|+ |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 5899999999999999999999 654
No 166
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.78 E-value=1.2e-05 Score=60.26 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|+|+|++|+||||+++.+.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 167
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.76 E-value=1.1e-05 Score=68.59 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC-CCc
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG-GHN 177 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~-~~~ 177 (237)
.+.++. +..+++++|+|++|+|||||++.+.+...+. .|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~ 167 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH 167 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcE
Confidence 355543 5678999999999999999999999987554 453
No 168
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.76 E-value=0.0003 Score=58.43 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=34.2
Q ss_pred CcccchHHHHHHHHHHhh--------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.|.+...+.+...+. ...-+.|+||.|+|||+||+.+++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 457787777777665542 12678999999999999999999865
No 169
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.75 E-value=2e-05 Score=66.82 Aligned_cols=95 Identities=14% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCC--CCCcCCCCHH
Q 044827 139 KVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLP--TDSWKNRSIE 216 (237)
Q Consensus 139 ~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~--~~~~~~~~~~ 216 (237)
++...+..|+.++|+|++|+|||||++.|.+........+.+. ++-+.+.... ..++.+.+.-. ......+...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~E---v~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEE---VTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHH---HHHHHTTCSSEEEEECTTSCHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHH---HHHHHHHhCeEEEEeCCCCCHHH
Confidence 4455566789999999999999999999988652222334443 4556654322 23334433110 0111222233
Q ss_pred HHH-----HHHHHHhh--cCCcEEEecC
Q 044827 217 NEA-----RDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 217 ~~~-----~~l~~~l~--~~~~LlvLDd 237 (237)
+.+ ..+++.+. ++..||++||
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~Ds 269 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDS 269 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 322 22444443 6778999997
No 170
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.75 E-value=1.6e-05 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+++|+|++|+||||+++.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999998854
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.75 E-value=8e-05 Score=64.76 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=37.6
Q ss_pred CcccchHHHH---HHHHHHhhcCC--EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATF---QKVLNCLAENA--IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~---~~i~~~l~~~~--vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..+ ..+...+..+. .+.|+|++|+|||||++.|++..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578988888 77888888775 58999999999999999999965
No 172
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=0.00032 Score=58.96 Aligned_cols=94 Identities=23% Similarity=0.318 Sum_probs=56.6
Q ss_pred HHHHHHHH--HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc--
Q 044827 135 ATFQKVLN--CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW-- 210 (237)
Q Consensus 135 ~~~~~i~~--~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~-- 210 (237)
..++.+.. -+..|+++.|.|++|+|||||+..++...... + ....|+.....++.. ..+.+|......
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i 118 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-G--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLV 118 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-C--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEE
Confidence 34555543 45567999999999999999999888655222 2 235666665555442 355666543211
Q ss_pred -CCCCHHHHHHHHHHHhh--cCCcEEEecC
Q 044827 211 -KNRSIENEARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 211 -~~~~~~~~~~~l~~~l~--~~~~LlvLDd 237 (237)
...+.++.. .+++.+. .++.+||+|.
T Consensus 119 ~~~~~~e~~l-~~~~~l~~~~~~~lIVIDs 147 (349)
T 2zr9_A 119 SQPDTGEQAL-EIADMLVRSGALDIIVIDS 147 (349)
T ss_dssp ECCSSHHHHH-HHHHHHHTTTCCSEEEEEC
T ss_pred ecCCCHHHHH-HHHHHHHhcCCCCEEEEcC
Confidence 122344433 3444442 4588999994
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.74 E-value=9e-06 Score=65.26 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~ 168 (237)
..+.+|+|+|++|+||||+++.|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999999
No 174
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.73 E-value=2.7e-05 Score=64.24 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=28.2
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNF 178 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f 178 (237)
+..+.+++|+|+||+|||||++.|. ...+..|..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i 195 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEV 195 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence 3457999999999999999999999 776666643
No 175
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.69 E-value=2.5e-05 Score=72.50 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|++++|+||||+|||||++.+++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 346899999999999999999998864
No 176
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.69 E-value=8.6e-06 Score=67.27 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=24.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHN 177 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~ 177 (237)
+..|++++|+|+||+|||||++.|.+...+..|.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~ 203 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE 203 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccc
Confidence 4568999999999999999999999887555443
No 177
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.68 E-value=0.00012 Score=60.01 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=49.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEec-cccCHHHHHHHHHHHCCCCCCCc-CCCCH-HHHHHHH
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVS-KELKLERIQEDIGKKIRLPTDSW-KNRSI-ENEARDI 222 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~-~~~~~~~~~~~il~~~~~~~~~~-~~~~~-~~~~~~l 222 (237)
.+++++|+|+||+||||++..+++...+..+.. .++... +.......+..+.+..+++.-.. ...+. +-++..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v---~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP---LLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE---EEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999999999884433322 122111 11111122334455556532110 11222 2234556
Q ss_pred HHHhhcCCcEEEecC
Q 044827 223 YNILRKKKFLLLLDD 237 (237)
Q Consensus 223 ~~~l~~~~~LlvLDd 237 (237)
+.+...+..++|+|.
T Consensus 174 ~~~~~~~~D~viiDt 188 (295)
T 1ls1_A 174 EKARLEARDLILVDT 188 (295)
T ss_dssp HHHHHHTCCEEEEEC
T ss_pred HHHHhCCCCEEEEeC
Confidence 666656677888883
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.68 E-value=0.00022 Score=60.05 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=36.3
Q ss_pred CcccchHHHHHHHHHHhh--------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. ...-+.|+|+.|+||||||+.+++..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457898888888877664 23789999999999999999999865
No 179
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.65 E-value=3.1e-05 Score=59.79 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=24.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.+++|+||+|+|||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 356899999999999999999999876
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=4.1e-05 Score=64.08 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHh-hcC--CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 128 RTIVGQQATFQKVLNCL-AEN--AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l-~~~--~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
..++|.+...+.+...+ ..+ ..+.|+|++|+||||+++.+++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999998888 554 33999999999999999999994
No 181
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.64 E-value=9.2e-06 Score=61.39 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccC
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYG 174 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~ 174 (237)
++++|+|++|+|||||++.|.+...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999987543
No 182
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.63 E-value=1.6e-05 Score=63.55 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-+.|+|++|+|||||++.+++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999976
No 183
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.63 E-value=7e-05 Score=54.66 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHHHh----hcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 130 IVGQQATFQKVLNCL----AENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l----~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++|....+..+...+ ..+.-+-|+|+.|+|||++|+.|+...
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 567777776666655 345778999999999999999999875
No 184
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.62 E-value=4.5e-05 Score=62.61 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHhhcC-----------CEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 129 TIVGQQATFQKVLNCLAEN-----------AIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~-----------~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
.++|....++.+...+... ..+.|+|++|+||||+|+.+++....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4678888888888877653 57999999999999999999997733
No 185
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.60 E-value=2.3e-05 Score=61.87 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
..|.+|+|.|++|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999986
No 186
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.59 E-value=3.5e-05 Score=63.98 Aligned_cols=24 Identities=50% Similarity=0.535 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++|+|++|+|||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999999875
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.58 E-value=3.6e-05 Score=59.46 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 044827 149 IIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~ 169 (237)
+|+|+|++|+||||+++.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 188
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.58 E-value=4.6e-06 Score=65.94 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
++++|+||||+|||||+++|++...+..|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 46689999999999999999998865554
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.58 E-value=0.00013 Score=61.37 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=35.2
Q ss_pred CcccchHHHHHHHHHHhh--------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. ...-+.|+|+.|+|||+||+.+++..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 457888888887777662 12458899999999999999999976
No 190
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.58 E-value=3.8e-05 Score=60.16 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|+|+|++|+||||+++.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.58 E-value=3.6e-05 Score=59.33 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 044827 149 IIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~ 169 (237)
+|+|+|++|+||||+++.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 192
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00037 Score=60.24 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=32.4
Q ss_pred cccchHHHHHHHHHHhhc---------------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLAE---------------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~---------------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.|-+...+.+...+.- ..-+.++||+|+|||+||+.|++..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456766666655544421 2778999999999999999999976
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.57 E-value=0.0003 Score=58.29 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHHHHhh----------c----CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA----------E----NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~----------~----~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. . ..-+.|+|++|+|||+||+.+++..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 457898888888877762 1 2568999999999999999999865
No 194
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.57 E-value=2.2e-05 Score=63.71 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-+.|+|++|+|||||++.|++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 38999999999999999999976
No 195
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.57 E-value=3.7e-05 Score=59.47 Aligned_cols=28 Identities=36% Similarity=0.530 Sum_probs=24.5
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..+.+|+|+|++|+||||+++.+.+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3446899999999999999999999864
No 196
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.57 E-value=4.8e-05 Score=57.52 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|+|+||+|||||+.+|+...
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999997754
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00029 Score=60.09 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=32.9
Q ss_pred cccchHHHHHHHHHHhhc---------------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLAE---------------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~---------------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.|-+...+.+...+.- ..-+-++||+|+|||+||+.+++..
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 456777766666555432 1668899999999999999999976
No 198
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00034 Score=60.37 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHHHhh----c-----------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA----E-----------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~----~-----------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.|-+...+.+...+. . ..-+.++||+|+|||+||+.+++..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 46677777666655432 1 2678999999999999999999976
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.54 E-value=0.00026 Score=60.29 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=36.8
Q ss_pred CcccchHHHHHHHHHHhh--------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. ...-+.|+|+.|+|||+||+.|+...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 457899988888887772 23689999999999999999998864
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00034 Score=60.29 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=33.1
Q ss_pred CcccchHHHHHHHHHHhhc-----------C----CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAE-----------N----AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~-----------~----~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++.|-+...+.+...+.- | .-+.++||+|+|||+||+.+++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3566777766666554421 1 558999999999999999999976
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.53 E-value=0.00048 Score=57.68 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=45.4
Q ss_pred HHHHHH-HHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-cC--CCcceEEEEEEeccccCHHHHHHHHHHHCCCC
Q 044827 136 TFQKVL-NCLAENAIIGLYGSGGVGKTTLLKQINNNFC-YG--GHNFDIVIWVVVSKELKLERIQEDIGKKIRLP 206 (237)
Q Consensus 136 ~~~~i~-~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-~~--~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~ 206 (237)
.++.+. .-+..|+++.|+|++|+|||||+..++.... +. .|.-...+|+.....++...+ ..++..++++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l-~~~~~~~g~~ 183 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL-RDIADRFNVD 183 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH-HHHHHHTTCC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 355544 2456679999999999999999999887531 11 011235667776665565543 4556677664
No 202
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=6.4e-05 Score=62.75 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..++.+...+..+ ..+.|+|++|+||||+++.+++..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999887 459999999999999999999875
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.51 E-value=0.00016 Score=62.70 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.-+.|+|++|+|||||++.|++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.51 E-value=7.1e-05 Score=62.75 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
++....+.++......+.+++|+|++|+|||||++.+.+...
T Consensus 40 ~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 40 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456667778777777789999999999999999999988763
No 205
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.50 E-value=0.0003 Score=57.63 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHHHhh-----------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA-----------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~-----------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+...+.+...+. .+.-+.|+|++|+|||||++.+++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35777666666654432 12568999999999999999888876
No 206
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.49 E-value=2e-05 Score=64.99 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 131 VGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
||+...++++.+ .|+|+|+||+|||||++.|++.
T Consensus 8 ~~~~~~l~~~~~------~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 8 VHRKSVKKGFEF------TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ----------CE------EEEEEEETTSSHHHHHHHHHC-
T ss_pred ECCEEEEcCCCE------EEEEECCCCCCHHHHHHHHhCC
Confidence 555555555543 3499999999999999999885
No 207
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.48 E-value=8.2e-05 Score=66.28 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.5
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH 176 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~ 176 (237)
+..|.+++|+|+||+|||||++.|++...+..|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 457799999999999999999999998855443
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00052 Score=59.48 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=33.0
Q ss_pred cccchHHHHHHHHHHhh---------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA---------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~---------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.|-+...+.|...+. ...-|.++||+|+|||+||+.|++..
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 45676776666655432 12778999999999999999999976
No 209
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.48 E-value=2.5e-05 Score=60.23 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+..+..++|+|++|+|||||++.+.+..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345567899999999999999999999875
No 210
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.47 E-value=9.9e-05 Score=61.92 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCE--EEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAENAI--IGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~v--i~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++.+...+..|++ +.|+|++|+||||+++.+++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345666666677766 9999999999999999998865
No 211
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.46 E-value=6.3e-05 Score=57.39 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.++|+|++|+|||||++.+.+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999999876
No 212
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.45 E-value=0.00054 Score=59.57 Aligned_cols=100 Identities=17% Similarity=0.284 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCCC-----C
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLPT-----D 208 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~~-----~ 208 (237)
..++.+ ..+..|+.++|+|++|+|||||++.+........+ ++.+++-+.+... ..++..++...-.+.. .
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~--~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~ 216 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHG--GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFG 216 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTC--CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccC--cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEE
Confidence 355554 44456789999999999999999999886522222 3345555555432 2233333332211110 0
Q ss_pred CcCCCCHHHH-----HHHHHHHhh---cCCcEEEecC
Q 044827 209 SWKNRSIENE-----ARDIYNILR---KKKFLLLLDD 237 (237)
Q Consensus 209 ~~~~~~~~~~-----~~~l~~~l~---~~~~LlvLDd 237 (237)
....+.+.+. ...+++++. ++..||++||
T Consensus 217 ~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~ 253 (473)
T 1sky_E 217 QMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDN 253 (473)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 1122234333 334666654 5688999997
No 213
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.44 E-value=0.0003 Score=59.12 Aligned_cols=44 Identities=27% Similarity=0.417 Sum_probs=34.6
Q ss_pred CcccchHHHHHH---HHHHhhcC----CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQK---VLNCLAEN----AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~---i~~~l~~~----~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+. +...+..+ ..+.|+||.|+|||||++.++...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457898877555 44444444 579999999999999999999977
No 214
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.43 E-value=7.7e-05 Score=57.65 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=24.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.++.|+|++|+|||||++.+....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456899999999999999999998765
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.42 E-value=6.8e-05 Score=57.75 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|+|++|+||||+++.|.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 216
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.42 E-value=8.1e-05 Score=57.03 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|+|++|+|||||++.+.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999874
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.42 E-value=0.00069 Score=56.24 Aligned_cols=101 Identities=20% Similarity=0.370 Sum_probs=59.9
Q ss_pred HHHHHH-HHhhcCCEEEEEcCCCCcHHHHHHHHHhccccC---CCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCC--
Q 044827 136 TFQKVL-NCLAENAIIGLYGSGGVGKTTLLKQINNNFCYG---GHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDS-- 209 (237)
Q Consensus 136 ~~~~i~-~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~---~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~-- 209 (237)
.++.+. .-+..|+++.|.|++|+|||||+..++...... .|.-...+|+.....++...+ .++++.++.+...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l-~~~~~~~g~~~~~~~ 173 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI-ENMAKALGLDIDNVM 173 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH-HHHHHHhCCCHHHHh
Confidence 344443 245667999999999999999999988754111 011235677776665655544 4556777764210
Q ss_pred -----cCCCCHHHH---HHHHHHHhh--cCCcEEEecC
Q 044827 210 -----WKNRSIENE---ARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 210 -----~~~~~~~~~---~~~l~~~l~--~~~~LlvLDd 237 (237)
....+.+++ ...+...+. .+..+||+|.
T Consensus 174 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDs 211 (324)
T 2z43_A 174 NNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDS 211 (324)
T ss_dssp HTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETT
T ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 112233332 223444443 4678999984
No 218
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.42 E-value=0.00017 Score=67.29 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=33.0
Q ss_pred cccchHHHHHHHHHHhh---------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA---------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~---------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+..++.+...+. .+..+.|+|++|+|||||++.|++..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46676666555555443 34789999999999999999999965
No 219
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.39 E-value=0.00016 Score=59.21 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
+.+|+|+|++|+|||||++.|.+...
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 37999999999999999999998773
No 220
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.39 E-value=0.0001 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998764
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.38 E-value=0.00051 Score=59.27 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
+.++.++|++|+||||++..++....+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999987743
No 222
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.38 E-value=9.6e-05 Score=55.00 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 044827 148 AIIGLYGSGGVGKTTLLKQI 167 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i 167 (237)
.+|.|+|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 223
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.38 E-value=0.00011 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|+|+|++|+||||+++.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 224
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.37 E-value=0.00019 Score=60.30 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHhhcC---CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN---AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~---~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+..+ ..+.|+|+.|+||||+++.++...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999988876 468999999999999999998866
No 225
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.37 E-value=0.00025 Score=62.39 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+..++.+...+..+.-+.|+|++|+|||+||+.|++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999876
No 226
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.0002 Score=58.92 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHhhcCC--EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAENA--IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~--vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+..+. .+.|+|+.|+||||+++.++...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 357899999999998888773 69999999999999999999875
No 227
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.36 E-value=0.00055 Score=59.41 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=35.3
Q ss_pred CcccchHHHHHHHHHHhh--------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. ...-+.|+||+|+|||+||+.+++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457888888777776552 22678999999999999999999865
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00083 Score=57.68 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=32.1
Q ss_pred cccchHHHHHHHHHHhh----c-----------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA----E-----------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~----~-----------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++-|-+...+.+...+. . ..=|-++||+|+|||+||+.|++..
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 45566666655554432 1 1679999999999999999999976
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.34 E-value=0.00021 Score=54.88 Aligned_cols=37 Identities=38% Similarity=0.363 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcC------CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAEN------AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~------~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++.+...+... ..+.|+|++|+|||||++.+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3555555555543 789999999999999999999977
No 230
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.34 E-value=0.00014 Score=60.37 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=38.8
Q ss_pred cccchHHHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+..++.+...+..+.-+.|+|++|+|||+|++.+.+..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred ceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999998888888899999999999999999998854
No 231
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.33 E-value=0.00037 Score=56.19 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.-+.|+|+.|+||||||+.++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 678899999999999999999864
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.33 E-value=0.00012 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.2
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
....+..|.|+|+.|+||||+++.+...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3445678999999999999999999886
No 233
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00064 Score=56.16 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=53.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc---CCCCHHHHHH
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW---KNRSIENEAR 220 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~---~~~~~~~~~~ 220 (237)
+..| ++-|.|++|+|||||+-.++..... .+.=...+|+.-...++.. .++++|++.... ...+.++...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l 98 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRI 98 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHH
Confidence 4455 8999999999999997766554422 1111346777666666553 367888764321 2224555524
Q ss_pred HHHHHh----hcCCcEEEec
Q 044827 221 DIYNIL----RKKKFLLLLD 236 (237)
Q Consensus 221 ~l~~~l----~~~~~LlvLD 236 (237)
.+...+ ..++.+||+|
T Consensus 99 ~i~~~l~~i~~~~~~lvVID 118 (333)
T 3io5_A 99 DMVNQLDAIERGEKVVVFID 118 (333)
T ss_dssp HHHHHHHTCCTTCCEEEEEE
T ss_pred HHHHHHHHhhccCceEEEEe
Confidence 444444 3467899998
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.30 E-value=0.00015 Score=54.49 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|+|++|+||||+++.+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3679999999999999999999865
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.30 E-value=0.00018 Score=54.62 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.+.+|.|+|++|+||||+++.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998773
No 236
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.26 E-value=0.00027 Score=57.75 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=36.0
Q ss_pred CcccchHHHHHHHHHHhhc----------------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAE----------------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~----------------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+.. +.-+.|+|+.|+||||+++.++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478888888887776643 3678899999999999999999876
No 237
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.26 E-value=0.00029 Score=61.61 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+... .-+.|+|++|+||||+++.++...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999888543 567899999999999999999875
No 238
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.26 E-value=0.00017 Score=53.00 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 044827 147 NAIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~ 168 (237)
..+.+|+|+||+||||++..|+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3688999999999999999875
No 239
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.26 E-value=0.0013 Score=55.41 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=56.7
Q ss_pred HHHHHHHH--HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc--
Q 044827 135 ATFQKVLN--CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW-- 210 (237)
Q Consensus 135 ~~~~~i~~--~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~-- 210 (237)
..++.+.. -+..+.++.|.|++|+|||||+..++..... .| ...+|+.....++.. .+..++......
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i 120 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLC 120 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CC--CeEEEEeCCCCccHH-----HHHHcCCChhheee
Confidence 34555532 3556799999999999999999988876522 22 135677665555543 245566542211
Q ss_pred -CCCCHHHHHHHHHHHh-hcCCcEEEecC
Q 044827 211 -KNRSIENEARDIYNIL-RKKKFLLLLDD 237 (237)
Q Consensus 211 -~~~~~~~~~~~l~~~l-~~~~~LlvLDd 237 (237)
...+.++....+.... ..+..+||+|.
T Consensus 121 ~~~~~~e~~~~~~~~l~~~~~~~lVVIDs 149 (356)
T 1u94_A 121 SQPDTGEQALEICDALARSGAVDVIVVDS 149 (356)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred eCCCCHHHHHHHHHHHHhccCCCEEEEcC
Confidence 1123444443333333 35678999984
No 240
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.25 E-value=9.3e-05 Score=66.82 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcccc-CCCc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFCY-GGHN 177 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~~-~~~~ 177 (237)
..++|+|+||+|||||++.|.|...| ..|.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~ 76 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGI 76 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCe
Confidence 56999999999999999999998755 4664
No 241
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.24 E-value=0.00041 Score=54.28 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhc--CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 134 QATFQKVLNCLAE--NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 134 ~~~~~~i~~~l~~--~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...++.+...+.. +..+.|+|++|+|||||++.+++..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666666654 5899999999999999999999876
No 242
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.24 E-value=0.00017 Score=57.83 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.|+|++|+|||||++.|+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998764
No 243
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.24 E-value=0.00018 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 044827 148 AIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 244
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.24 E-value=0.00017 Score=62.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhccc
Q 044827 150 IGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 150 i~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
|+|+|+||+|||||++.+++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 59999999999999999999764
No 245
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.23 E-value=0.00019 Score=61.96 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=25.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
..+++++|+|+||+|||||+.+|++...+
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34689999999999999999999986633
No 246
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.23 E-value=0.0015 Score=57.42 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHHHhhc---------------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLAE---------------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~---------------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|....++.+...+.. ..-+.|+|++|+|||++|+.|++..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 467888887777666532 2678999999999999999998865
No 247
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.23 E-value=0.00016 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|.|+|++|+||||+++.|....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.22 E-value=0.00075 Score=62.42 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..+..+...+... .-+.|+|+.|+||||+++.+++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999888754 678899999999999999998865
No 249
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.21 E-value=0.00019 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
No 250
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.21 E-value=0.0011 Score=57.53 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++.+..-+..|+++.|.|++|+|||||+..++...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677777667888999999999999999999998876
No 251
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.21 E-value=0.00033 Score=64.83 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..++.+...+... .-+.|+|++|+||||+++.++...
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999988654 568899999999999999999875
No 252
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.20 E-value=0.0002 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 253
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.20 E-value=0.00033 Score=54.27 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
..+..+.+|.|+|++|+||||+++.+.+...
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4466789999999999999999999998763
No 254
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.19 E-value=0.0016 Score=56.29 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.++|++|+||||++..++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 3789999999999999999998776
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00024 Score=53.70 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|+|++|+||||+++.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998643
No 256
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.0003 Score=56.27 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++.|+|++|+||||+++.+....
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999999998865
No 257
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.15 E-value=0.0038 Score=54.22 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=57.3
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCC------CC-----C
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLP------TD-----S 209 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~------~~-----~ 209 (237)
.-+-.|+.++|+|+.|+|||||+..+...... .+-++.+++-+.+... ..++.+++.+.-.+. .. .
T Consensus 148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~--~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t 225 (482)
T 2ck3_D 148 APYAKGGKIGLFGGAGVGKTVLIMELINNVAK--AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQ 225 (482)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHTTT--TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEEC
T ss_pred cccccCCeeeeecCCCCChHHHHHHHHHhhHh--hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEEC
Confidence 44557899999999999999999998886422 2234566677776543 344556665543332 10 0
Q ss_pred cCCCCHHH-----HHHHHHHHhh---cCCcEEEecC
Q 044827 210 WKNRSIEN-----EARDIYNILR---KKKFLLLLDD 237 (237)
Q Consensus 210 ~~~~~~~~-----~~~~l~~~l~---~~~~LlvLDd 237 (237)
.+.+.+.+ ....+++++. ++..||++||
T Consensus 226 ~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Ds 261 (482)
T 2ck3_D 226 MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDN 261 (482)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 11222222 2334566664 4788999996
No 258
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00052 Score=56.81 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
+..+.++.|+|++|+|||||+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445578899999999999999999874
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.15 E-value=0.00026 Score=53.47 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...|.|+|+.|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998754
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.15 E-value=0.0019 Score=54.57 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=57.3
Q ss_pred HHHHHHH--HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCC---c
Q 044827 136 TFQKVLN--CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDS---W 210 (237)
Q Consensus 136 ~~~~i~~--~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~---~ 210 (237)
.++.+.. -+..+.++.|.|++|+|||||+..++..... .+ ..++|+.....++.. .+..+|++... .
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~-~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~ 132 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-AG--GTCAFIDAEHALDPV-----YARALGVNTDELLVS 132 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEE
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CC--CeEEEEECCCChhHH-----HHHHcCCCHHHceee
Confidence 4555443 4556799999999999999999887765422 22 246677766655543 25566664221 1
Q ss_pred CCCCHHHHHHHHHHHhh-cCCcEEEecC
Q 044827 211 KNRSIENEARDIYNILR-KKKFLLLLDD 237 (237)
Q Consensus 211 ~~~~~~~~~~~l~~~l~-~~~~LlvLDd 237 (237)
...+.++....+...+. ....+||+|.
T Consensus 133 ~~~~~e~~l~~l~~l~~~~~~~lVVIDs 160 (366)
T 1xp8_A 133 QPDNGEQALEIMELLVRSGAIDVVVVDS 160 (366)
T ss_dssp CCSSHHHHHHHHHHHHTTTCCSEEEEEC
T ss_pred cCCcHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 12245555444444443 4567999984
No 261
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.14 E-value=0.00029 Score=58.52 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=36.9
Q ss_pred CcccchHHHHHHHHHHhhcC-------CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN-------AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~-------~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.+++..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45899998888888777642 578999999999999999998865
No 262
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.14 E-value=0.00032 Score=57.81 Aligned_cols=44 Identities=32% Similarity=0.416 Sum_probs=36.1
Q ss_pred CcccchHHHHHHHHHHhh-------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA-------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~-------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|+...+..+...+. ....+.|+|+.|+||||||+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 457899888887777664 23678999999999999999999865
No 263
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.13 E-value=0.00042 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++.|.|++|+||||+++.+....
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 264
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.00027 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|.|++|+||||+++.+....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.12 E-value=0.0022 Score=52.93 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEe
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVV 186 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v 186 (237)
..++.+..-+..|+++.|.|++|+|||||+..++... ...+ ....|++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~sl 104 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSL 104 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEES
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEEC
Confidence 3566666567788999999999999999999888665 3333 34455543
No 266
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.12 E-value=0.00042 Score=56.78 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..++.+...+..+ ..+.|+|+.|+||||+++.++...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 45789999999999988876 348999999999999999998865
No 267
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.11 E-value=0.00028 Score=60.20 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.3
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
+..+..++|+|+||+|||||++.+.+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 445689999999999999999999994
No 268
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00055 Score=60.56 Aligned_cols=44 Identities=30% Similarity=0.481 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhhc-------------------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAE-------------------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~-------------------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..++.+..++.. ...+.|+||.|+||||+|+.+++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999888864 2689999999999999999999865
No 269
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.10 E-value=0.00051 Score=57.84 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHhh-----------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 130 IVGQQATFQKVLNCLA-----------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 130 ~~g~~~~~~~i~~~l~-----------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++|.+...+.+...+. .+..+.|+||+|+|||++|+.|+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5788888887777762 34678999999999999999999865
No 270
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.10 E-value=0.00016 Score=64.40 Aligned_cols=43 Identities=35% Similarity=0.530 Sum_probs=32.0
Q ss_pred cccchHHHHHHHHHHhh--------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA--------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~--------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+.....+...+. .+..+.|+||+|+|||||++.|++..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35676655544433221 35899999999999999999999976
No 271
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00029 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.+|+|+|+.|+||||+++.+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 68999999999999999999874
No 272
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.07 E-value=0.00033 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 273
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.07 E-value=0.00031 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|.|.|+.|+||||+++.+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 274
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.00036 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++|+|++|+|||||++.+.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999875
No 275
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.07 E-value=0.0003 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.|+|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 276
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.06 E-value=0.00049 Score=52.32 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=24.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+.+|.|+|+.|+||||+++.+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998754
No 277
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.06 E-value=0.00037 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++|+|.|+.|+||||+++.+....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998865
No 278
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.05 E-value=0.00042 Score=57.52 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=25.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHhccccC
Q 044827 145 AENAIIGLYGSGGVGKTTLLKQINNNFCYG 174 (237)
Q Consensus 145 ~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~ 174 (237)
..+.+++|+|+||+||||++..+++...+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346899999999999999999999987443
No 279
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.05 E-value=0.00033 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..|+|+|.+|+|||||++.+.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4679999999999999999999864
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.05 E-value=0.00035 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 044827 148 AIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.00033 Score=55.25 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=26.2
Q ss_pred HHHH-HHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 137 FQKV-LNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 137 ~~~i-~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.+ ..-+..|+++.|.|++|+|||||+..++...
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 2346677999999999999999977665443
No 282
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.04 E-value=0.00039 Score=54.87 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|+|+|++|+||||+++.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999998743
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.03 E-value=0.00035 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|+|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.03 E-value=0.00036 Score=53.20 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.2
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..+.+|+|.|+.|+||||+++.+....
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445799999999999999999998865
No 285
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.02 E-value=0.00035 Score=55.26 Aligned_cols=25 Identities=16% Similarity=0.510 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.-+|+|.|++|+||||+++.|....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998755
No 286
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.02 E-value=0.00047 Score=57.93 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
+.+++|+|++|+|||||++.+.+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999998653
No 287
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.02 E-value=0.00036 Score=55.02 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
.+..|.|.|++|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999999873
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.01 E-value=0.00033 Score=52.77 Aligned_cols=26 Identities=42% Similarity=0.394 Sum_probs=22.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+..|.|+|++|+||||+++.+....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998654
No 289
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00037 Score=58.75 Aligned_cols=25 Identities=40% Similarity=0.753 Sum_probs=22.1
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHh
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
+..+ +++|+|+||+|||||+..|+.
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3445 999999999999999999986
No 290
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.00 E-value=0.00017 Score=55.81 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|+|+|++|+||||+++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.99 E-value=0.00044 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|+|.|+.|+||||+++.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998754
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.99 E-value=0.0004 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|.|+||+|+|||||++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997654
No 293
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.99 E-value=0.0008 Score=55.53 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHhhcC---CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN---AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~---~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+.....+...+..+ ..+-+.|+.|+||||+++.+++..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45789999999999988876 577888889999999999999865
No 294
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.99 E-value=0.0025 Score=52.28 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
+.+++++|++|+||||++..+++...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999988743
No 295
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.97 E-value=0.00041 Score=58.67 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 044827 148 AIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~ 168 (237)
.+.+|+|+||+|||||+..|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 488999999999999999987
No 296
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.96 E-value=0.0013 Score=54.34 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=58.9
Q ss_pred HHHHHH-HHhhcCCEEEEEcCCCCcHHHHHHHHHhccc-c----------CCCcc--eEEEEEEeccccCHHHHHHHHHH
Q 044827 136 TFQKVL-NCLAENAIIGLYGSGGVGKTTLLKQINNNFC-Y----------GGHNF--DIVIWVVVSKELKLERIQEDIGK 201 (237)
Q Consensus 136 ~~~~i~-~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~-~----------~~~~f--~~~~~v~v~~~~~~~~~~~~il~ 201 (237)
.++.+. .-+..++++.|.|++|+|||||+..++.... + ..|-. ...+|+.....++...+ .++++
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l-~~~~~ 164 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERI-MQMAE 164 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHH-HHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHH-HHHHH
Confidence 444443 2456679999999999999999998876421 1 11211 45677776666655544 45566
Q ss_pred HCCCCCC----C---cCCCCHHH---HHHHHHHHhh--cCCcEEEecC
Q 044827 202 KIRLPTD----S---WKNRSIEN---EARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 202 ~~~~~~~----~---~~~~~~~~---~~~~l~~~l~--~~~~LlvLDd 237 (237)
.++.+.. . ....+.++ ....+...+. .+..+||+|.
T Consensus 165 ~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDs 212 (322)
T 2i1q_A 165 HAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDS 212 (322)
T ss_dssp HHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEEC
T ss_pred HcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEEC
Confidence 6766421 0 11223333 2223444554 3567899984
No 297
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.95 E-value=0.00048 Score=52.86 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|+|.|++|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998864
No 298
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.00039 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|.|+|+.|+||||+++.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 299
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.94 E-value=0.001 Score=53.24 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=31.3
Q ss_pred cccchHHHHHHHHHHh----hcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCL----AENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l----~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|....+..+...+ ..+.-+.|+|+.|+|||++|+.++...
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3567766666555443 345788899999999999999999876
No 300
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.93 E-value=0.00047 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|.|.|+.|+||||+++.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998864
No 301
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.93 E-value=0.0014 Score=60.79 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.-|.++||+|+|||+||+.|++..
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999965
No 302
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.93 E-value=0.00051 Score=53.12 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 044827 148 AIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~ 168 (237)
.+..|+|+||+||||++.+|+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 688999999999999999874
No 303
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.93 E-value=0.00055 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 304
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.93 E-value=0.0002 Score=52.12 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=31.1
Q ss_pred cccchHHHHHHHHHHhh----cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA----ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~----~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|....++.+...+. .+.-+.|+|+.|+|||++|+.++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35676666666555543 45678899999999999999998864
No 305
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.92 E-value=0.00045 Score=57.72 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 044827 147 NAIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~ 168 (237)
..+.+|+|+||+|||||+.+|+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3688999999999999999874
No 306
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.92 E-value=0.0036 Score=53.85 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcccc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNFCY 173 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~~~ 173 (237)
.+.+++|+|++|+||||++..+++...+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999998844
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.91 E-value=0.00065 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|+|.|+.|+||||+++.+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999865
No 308
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.91 E-value=0.00056 Score=52.47 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.+|+|+|+.|+||||+++.+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999885
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.90 E-value=0.00063 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++|+|++|+|||||+..+....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.90 E-value=0.00057 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 311
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.90 E-value=0.0003 Score=56.47 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=31.1
Q ss_pred CcccchHHHHHHHHHHhh--------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+...+. ...-+.|+|++|+|||||++.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 346776655555544332 12447799999999999999999865
No 312
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.89 E-value=0.00058 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 313
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.89 E-value=0.0004 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|.|+.|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998765
No 314
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.88 E-value=0.00061 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.87 E-value=0.00056 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997754
No 316
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.87 E-value=0.00058 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|.|+.|+||||+++.+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 317
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.87 E-value=0.00065 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|+|.|+.|+||||+++.+....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998865
No 318
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.86 E-value=0.00044 Score=57.38 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 044827 148 AIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
.+.+|+|+||+|||||+.+|+.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4999999999999999999984
No 319
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.84 E-value=0.00081 Score=63.08 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|++..+..+...+..+ .-+.|+|++|+||||+++.+++..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999988765 467899999999999999999875
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.84 E-value=0.00066 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|.|+.|+||||+++.+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998754
No 321
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.84 E-value=0.00062 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|+|++|+|||||++.+.+..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999864
No 322
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.84 E-value=0.00068 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|.|+|+.|+||||+++.+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.84 E-value=0.00064 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|.|+.|+||||+++.|....
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 324
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.84 E-value=0.0018 Score=53.46 Aligned_cols=24 Identities=46% Similarity=0.582 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.|+|++|+|||||++.+++..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999999876
No 325
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.84 E-value=0.0012 Score=57.99 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=31.5
Q ss_pred CcccchHHHHH---HHHHHhhc-----------CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQ---KVLNCLAE-----------NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~---~i~~~l~~-----------~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+.... ++...+.. ..-+.|+|++|+|||||++.|++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45677765544 44443322 1348999999999999999999976
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.84 E-value=0.00066 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997754
No 327
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.82 E-value=0.00074 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|+|.|+.|+||||+++.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999865
No 328
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.82 E-value=0.0022 Score=59.54 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+...+..++.+.|+|++|+||||++..+....
T Consensus 99 ~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 99 RDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45556667778999999999999999888776543
No 329
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.82 E-value=0.00036 Score=59.96 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 138 QKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 138 ~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++++..+..+..++|+|++|+|||||++.|.+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4556667778999999999999999999999874
No 330
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.79 E-value=0.00092 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNFC 172 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~~ 172 (237)
-.|+|+|.+|+|||||++.+.+...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 5789999999999999999998763
No 331
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.79 E-value=0.0007 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..|.|.|+.|+||||+++.|....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 332
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.78 E-value=0.00077 Score=54.08 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|+|++|+||||+++.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998863
No 333
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.78 E-value=0.00093 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..|.|+|+.|+||||+++.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 334
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.00056 Score=53.77 Aligned_cols=26 Identities=23% Similarity=0.017 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.++.|.|+.|+||||++-.+....
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45889999999999999887776655
No 335
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.72 E-value=0.011 Score=51.47 Aligned_cols=94 Identities=19% Similarity=0.290 Sum_probs=57.8
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCCC------C------
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLPT------D------ 208 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~~------~------ 208 (237)
.-+-.|+.++|+|..|+|||+|+..+...... .+-++.+++-+.+... ..++.+++.+.-.+.. .
T Consensus 160 ~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~--~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~ 237 (498)
T 1fx0_B 160 APYRRGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYG 237 (498)
T ss_dssp SCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT--TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEE
T ss_pred cccccCCeEEeecCCCCCchHHHHHHHHHHHh--hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEe
Confidence 44556799999999999999999998886422 2235667777776543 4455555555333320 0
Q ss_pred CcCCCCH-----HHHHHHHHHHhhc---CCcEEEecC
Q 044827 209 SWKNRSI-----ENEARDIYNILRK---KKFLLLLDD 237 (237)
Q Consensus 209 ~~~~~~~-----~~~~~~l~~~l~~---~~~LlvLDd 237 (237)
..+.+.+ -.....+++++.. +..||++||
T Consensus 238 t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Ds 274 (498)
T 1fx0_B 238 QMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDN 274 (498)
T ss_dssp CTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 0111112 2333456677755 678888886
No 336
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.72 E-value=0.0012 Score=54.23 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=33.4
Q ss_pred cccchHHHHHHHHHHhh----cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA----ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~----~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|....+..+...+. .+.-+.|+|++|+|||++|+.|+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 35677666666655543 35778899999999999999999865
No 337
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.72 E-value=0.0016 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.|+||+|+|||+|++.|++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999976
No 338
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.70 E-value=0.0007 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|.|.|+.|+||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998765
No 339
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.70 E-value=0.0018 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+.|+|+.|+||||+|+.++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999865
No 340
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.70 E-value=0.0009 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|++|+|||||++.+.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999875
No 341
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.68 E-value=0.0017 Score=56.15 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHHhhc------C-------CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 131 VGQQATFQKVLNCLAE------N-------AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 131 ~g~~~~~~~i~~~l~~------~-------~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|.+..++.+...+.. . -.++|+|++|+|||||++.+.+..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4566667766655531 1 279999999999999999999874
No 342
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0011 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|+.|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998864
No 343
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.66 E-value=0.00096 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 044827 148 AIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
.+|+|.|+.|+||||+++.+..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
No 344
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.65 E-value=0.0066 Score=50.62 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++.+..-+..|+++.|.|++|+|||||+..++...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566666667788999999999999999999988765
No 345
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.006 Score=50.14 Aligned_cols=38 Identities=5% Similarity=0.040 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhhcC--CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 133 QQATFQKVLNCLAEN--AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 133 ~~~~~~~i~~~l~~~--~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.+..++.+...+..+ ..+-++||.|+||||+++.+...
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 345667777777766 58899999999999999999874
No 346
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.65 E-value=0.0012 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 347
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.64 E-value=0.0012 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 348
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.64 E-value=0.0011 Score=48.20 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+++|.+|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 349
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.0012 Score=51.63 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=24.9
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+....+|.|+||+|+||||.++.|....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555899999999999999999998865
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.62 E-value=0.0012 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.61 E-value=0.0023 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+.+|.|.|+.|+||||+++.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999998754
No 352
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.61 E-value=0.0013 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998764
No 353
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.60 E-value=0.016 Score=50.17 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++.+..-+..|+++.|.|++|+|||||+..++...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3566666557778999999999999999999888765
No 354
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.0022 Score=52.87 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhc-----CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 134 QATFQKVLNCLAE-----NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 134 ~~~~~~i~~~l~~-----~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+..+..++.. +.-+.|+|+.|+|||+|++.+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555555553 5789999999999999999999876
No 355
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0014 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 356
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.58 E-value=0.0012 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998754
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.57 E-value=0.0013 Score=54.94 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|+|++|+|||||++.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999865
No 358
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.57 E-value=0.00065 Score=55.56 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+|+|.|+.|+||||+++.+....
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998754
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.54 E-value=0.0017 Score=50.31 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=26.9
Q ss_pred HHHHHHHHHhh--cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLA--ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~--~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...+.+...+. ...+++|+|.+|+|||||++.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444443332 23789999999999999999998764
No 360
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.54 E-value=0.015 Score=50.80 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=53.6
Q ss_pred HhhcCCEEEEEcCCCCcHHHH-HHHHHhccccCCCcce-EEEEEEeccccC-HHHHHHHHHHHCCCCCC-----CcCCCC
Q 044827 143 CLAENAIIGLYGSGGVGKTTL-LKQINNNFCYGGHNFD-IVIWVVVSKELK-LERIQEDIGKKIRLPTD-----SWKNRS 214 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL-~~~i~~~~~~~~~~f~-~~~~v~v~~~~~-~~~~~~~il~~~~~~~~-----~~~~~~ 214 (237)
-+-.|+.++|+|..|+|||+| +..|.+.. .-+ ..+++-+.+... ...+.+++.+.=.+... ..+.+.
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 232 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPA 232 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCH
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCH
Confidence 345679999999999999999 67888865 234 345666666443 34444555443333211 112222
Q ss_pred HHHHH-----HHHHHHhh--cCCcEEEecC
Q 044827 215 IENEA-----RDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 215 ~~~~~-----~~l~~~l~--~~~~LlvLDd 237 (237)
..+.+ ..+++++. ++..||++||
T Consensus 233 ~~r~~a~~~a~tiAEyfrd~G~dVLl~~Ds 262 (502)
T 2qe7_A 233 PLLYLAPYAGCAMGEYFMYKGKHALVVYDD 262 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 33322 34556554 5778999997
No 361
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.53 E-value=0.0016 Score=47.58 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 362
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.53 E-value=0.0016 Score=47.47 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988654
No 363
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.53 E-value=0.0016 Score=47.82 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 364
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.53 E-value=0.0012 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
No 365
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.52 E-value=0.0017 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998865
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.51 E-value=0.0016 Score=47.87 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57999999999999999997543
No 367
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.51 E-value=0.0012 Score=49.53 Aligned_cols=23 Identities=48% Similarity=0.572 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.|+|+|.+|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999876
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.50 E-value=0.0014 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|.|.|+.|+||||+++.|....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998765
No 369
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.50 E-value=0.0017 Score=47.48 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 370
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.0015 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+|.|+||+|+||+|.++.|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999865
No 371
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.50 E-value=0.0017 Score=48.91 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|.+|+|||||++.+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998764
No 372
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.49 E-value=0.0017 Score=48.14 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|+.|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999988754
No 373
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.49 E-value=0.0018 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998765
No 374
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.48 E-value=0.0016 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.|+|+|.+|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999999874
No 375
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.48 E-value=0.0018 Score=48.05 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
...|+|+|..|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3689999999999999999998753
No 376
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.48 E-value=0.0017 Score=48.87 Aligned_cols=24 Identities=46% Similarity=0.459 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998764
No 377
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.46 E-value=0.0028 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|+|.+|+|||||++.+.+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998764
No 378
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.46 E-value=0.0017 Score=53.93 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=33.0
Q ss_pred CcccchHHHHHHHHHHhh--cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLA--ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~--~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+.....+...+. ...-+.|+|+.|+|||+||+.++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 347888776665544443 23458999999999999999999876
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.46 E-value=0.0019 Score=47.87 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 380
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.46 E-value=0.0017 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998763
No 381
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.45 E-value=0.0033 Score=54.40 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=33.1
Q ss_pred cccchHHHHHHHHHHhh----------------cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 129 TIVGQQATFQKVLNCLA----------------ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~----------------~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|.+...+.+...+. ...-+.++||+|+||||+++.+++..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 46777777666655552 12568899999999999999999876
No 382
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.44 E-value=0.0035 Score=54.45 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=33.6
Q ss_pred CcccchHHHHHHHH---HHhhcC----CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVL---NCLAEN----AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~---~~l~~~----~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+...+.+. ..+..+ .-+.++||+|+|||+||+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 45788887765433 333333 578999999999999999999876
No 383
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.44 E-value=0.0018 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999874
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.44 E-value=0.0018 Score=47.48 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 385
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.44 E-value=0.0016 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998763
No 386
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.43 E-value=0.0017 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|.+|+|||||++.+.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
No 387
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.43 E-value=0.0067 Score=52.43 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=53.4
Q ss_pred HHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcce-EEEEEEecccc-CHHHHHHHHHHHCCCCC-----CCcCCCC
Q 044827 142 NCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFD-IVIWVVVSKEL-KLERIQEDIGKKIRLPT-----DSWKNRS 214 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~-~~~~v~v~~~~-~~~~~~~~il~~~~~~~-----~~~~~~~ 214 (237)
.-+-.|+.++|+|..|+|||||+..|.+......++-+ ..+++-+.+.. ...++.+++.+.=.+.. ...+.+.
T Consensus 146 ~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~ 225 (465)
T 3vr4_D 146 NTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPA 225 (465)
T ss_dssp SCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCH
T ss_pred cccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCH
Confidence 33456799999999999999999999987622111111 44555565543 23344444433211110 0112222
Q ss_pred HHHH-----HHHHHHHhh---cCCcEEEecC
Q 044827 215 IENE-----ARDIYNILR---KKKFLLLLDD 237 (237)
Q Consensus 215 ~~~~-----~~~l~~~l~---~~~~LlvLDd 237 (237)
..+. ...+++++. ++..||++||
T Consensus 226 ~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Ds 256 (465)
T 3vr4_D 226 IERIATPRMALTAAEYLAYEKGMHVLVIMTD 256 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 3322 234677776 4567778897
No 388
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.42 E-value=0.0018 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|.|+||.|+|||||++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 389
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.42 E-value=0.002 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.|+|+|.+|+|||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999877654
No 390
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.42 E-value=0.0017 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 478999999999999999998864
No 391
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.42 E-value=0.0017 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 392
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.42 E-value=0.002 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 393
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.41 E-value=0.0012 Score=50.34 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.++.++... ..-.|+|+|++|+|||||++.+.+.
T Consensus 15 ~l~~~~~~~-~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 445444332 2357899999999999999999864
No 394
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.41 E-value=0.0076 Score=52.09 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=53.1
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCC-------Ccce-EEEEEEeccccC-HHHHHHHHHHHCC-CCC-----
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGG-------HNFD-IVIWVVVSKELK-LERIQEDIGKKIR-LPT----- 207 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~-------~~f~-~~~~v~v~~~~~-~~~~~~~il~~~~-~~~----- 207 (237)
-+-.|+.++|+|..|+|||||+..|++...... ++-+ ..+++-+.+... ..++.+++.+ -| +..
T Consensus 143 pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~-~g~~~rtvvv~ 221 (464)
T 3gqb_B 143 TLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER-TGALSRSVLFL 221 (464)
T ss_dssp CCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH-TSGGGGEEEEE
T ss_pred ccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh-cccccceEEEE
Confidence 344679999999999999999999988762210 1122 445555665432 3334444333 22 110
Q ss_pred CCcCCCCHHHH-----HHHHHHHhh---cCCcEEEecC
Q 044827 208 DSWKNRSIENE-----ARDIYNILR---KKKFLLLLDD 237 (237)
Q Consensus 208 ~~~~~~~~~~~-----~~~l~~~l~---~~~~LlvLDd 237 (237)
...+.+...+. ...+++++. ++..||++||
T Consensus 222 ~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Dd 259 (464)
T 3gqb_B 222 NKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTD 259 (464)
T ss_dssp EETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 11122333333 234677776 4567778897
No 395
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.40 E-value=0.0021 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999997654
No 396
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.40 E-value=0.0032 Score=48.71 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 137 FQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 137 ~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
++.....+.....+.|+||+|+||||++..+++..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 33333333333579999999999999998888765
No 397
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.39 E-value=0.0024 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 398
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.39 E-value=0.0021 Score=48.02 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998764
No 399
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.39 E-value=0.0021 Score=47.17 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997654
No 400
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.39 E-value=0.0095 Score=51.67 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=55.4
Q ss_pred hhcCCEEEEEcCCCCcHHHHHHHHHhccccCCC-cceEEEEEEecccc-CHHHHHHHHHHHCCCCCC-----CcCCCCHH
Q 044827 144 LAENAIIGLYGSGGVGKTTLLKQINNNFCYGGH-NFDIVIWVVVSKEL-KLERIQEDIGKKIRLPTD-----SWKNRSIE 216 (237)
Q Consensus 144 l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~-~f~~~~~v~v~~~~-~~~~~~~~il~~~~~~~~-----~~~~~~~~ 216 (237)
+-.|+.++|+|..|+|||||+..|+......+. .=+..+++-+.+.. ...++.+++...=.+... ..+.+...
T Consensus 149 igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 149 LVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 446799999999999999999999987632111 11455666666543 334444555443222110 11122222
Q ss_pred H-----HHHHHHHHhh---cCCcEEEecC
Q 044827 217 N-----EARDIYNILR---KKKFLLLLDD 237 (237)
Q Consensus 217 ~-----~~~~l~~~l~---~~~~LlvLDd 237 (237)
+ ....+++++. ++..||++||
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~Ds 257 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTD 257 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 2 2344666665 4788999997
No 401
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.39 E-value=0.0017 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+++|+|++|+|||||++.+.+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 459999999999999999999876
No 402
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.38 E-value=0.0022 Score=48.45 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998754
No 403
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.38 E-value=0.0018 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|.+|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 57899999999999999998864
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.38 E-value=0.0021 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|.|.|+.|+||||+++.|....
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998865
No 405
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0031 Score=49.59 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHh
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINN 169 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~ 169 (237)
.-..+...+..++.+.|+|++|+||||++..+.-
T Consensus 65 ~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 65 FESEILEAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3445556667889999999999999998776543
No 406
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.37 E-value=0.002 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|++|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998764
No 407
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.36 E-value=0.0023 Score=47.35 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998765
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.36 E-value=0.0023 Score=48.03 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 409
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.35 E-value=0.018 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+++|++|+||||++-.++...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998766
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.34 E-value=0.0023 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.|+|+|.+|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 411
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.34 E-value=0.0023 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|.|+|+.|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998865
No 412
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.33 E-value=0.0015 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|++|+|||||++.+++..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCC
Confidence 357999999999999999998754
No 413
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.33 E-value=0.0024 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998864
No 414
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.31 E-value=0.0023 Score=47.28 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998654
No 415
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.31 E-value=0.0025 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998764
No 416
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.30 E-value=0.0016 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.|+|+|.+|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999653
No 417
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.29 E-value=0.0024 Score=47.71 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 418
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.29 E-value=0.0026 Score=47.40 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 578999999999999999998754
No 419
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.29 E-value=0.0027 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 420
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.29 E-value=0.033 Score=48.65 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHH-HHHHHhccccCCCcceEEEEEEeccccC-HHHHHHHHHHHCCCCCC----
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTL-LKQINNNFCYGGHNFDIVIWVVVSKELK-LERIQEDIGKKIRLPTD---- 208 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL-~~~i~~~~~~~~~~f~~~~~v~v~~~~~-~~~~~~~il~~~~~~~~---- 208 (237)
..++-+ .-+-.|+.++|+|..|+|||+| +..|.+.. ... ...+++-+.+... ...+.+++.+.=.+...
T Consensus 151 kaID~l-~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~d-v~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSM-IPIGRGQRELIIGDRQTGKTALAIDAIINQR---DSG-IKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHH-SCCBTTCBCEEEESSSSSHHHHHHHHHHTTS---SSS-CEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeeccc-cccccCCEEEeecCCCCCcchHHHHHHHhhc---cCC-ceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 444433 4455679999999999999999 57787743 111 2346677776543 34444554443223211
Q ss_pred -CcCCCCHHHHH-----HHHHHHhh--cCCcEEEecC
Q 044827 209 -SWKNRSIENEA-----RDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 209 -~~~~~~~~~~~-----~~l~~~l~--~~~~LlvLDd 237 (237)
..+.+...+.+ ..+++++. ++..||++||
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Ds 262 (513)
T 3oaa_A 226 ATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDD 262 (513)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 11222233322 23455553 5778999997
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.28 E-value=0.0026 Score=48.44 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 422
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0027 Score=47.14 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998765
No 423
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.27 E-value=0.0027 Score=48.31 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 424
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=96.25 E-value=0.029 Score=49.77 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKE 189 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~ 189 (237)
..++-+ .-+-.|+.++|+|+.|+|||+|+..|.+.. +-++.+++-+.+.
T Consensus 221 rvID~l-~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER 269 (600)
T 3vr4_A 221 RVIDTF-FPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHH-SCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEEC
T ss_pred hhhhcc-CCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEeccc
Confidence 444433 445678999999999999999999998864 2245666666654
No 425
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.24 E-value=0.0027 Score=54.51 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..+|.|+|++|+||||+++.+....
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3899999999999999999998754
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.24 E-value=0.0028 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|+||.|+|||||+..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999998765
No 427
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.23 E-value=0.0023 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|.+|+|||||++.+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 428
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.23 E-value=0.0015 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.-.|+|+|++|+|||||++.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999853
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.22 E-value=0.003 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998764
No 430
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0028 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 431
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.21 E-value=0.003 Score=47.04 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 432
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.21 E-value=0.0025 Score=54.24 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.9
Q ss_pred HhhcCCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 143 CLAENAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 143 ~l~~~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.+..+..++|+|.+|+|||||++.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3455688999999999999999999986
No 433
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.21 E-value=0.0031 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 478999999999999999887654
No 434
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.21 E-value=0.0025 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|+|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998753
No 435
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0029 Score=47.78 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Confidence 468999999999999999998753
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.19 E-value=0.0029 Score=48.21 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 578999999999999999998865
No 437
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.19 E-value=0.003 Score=47.04 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998543
No 438
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.19 E-value=0.0029 Score=47.37 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.-.|+|+|..|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999998754
No 439
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.18 E-value=0.0032 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|+.|+|||||++.+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998865
No 440
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.17 E-value=0.0064 Score=52.85 Aligned_cols=40 Identities=33% Similarity=0.536 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHhhcCC-EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 132 GQQATFQKVLNCLAENA-IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 132 g~~~~~~~i~~~l~~~~-vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+-...+..+...+..+. .+.|.|++|+||||++..+....
T Consensus 29 ~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34566777777777664 99999999999999999988776
No 441
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.003 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 478999999999999999998765
No 442
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.17 E-value=0.0032 Score=47.91 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 443
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.17 E-value=0.0031 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|.+|+|||||++.+.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999999865
No 444
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.17 E-value=0.0033 Score=46.72 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 445
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.003 Score=48.42 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999887654
No 446
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.16 E-value=0.003 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|.+|+|||||++.+.+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 447
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.16 E-value=0.0029 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|.|+|.+|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 579999999999999999988854
No 448
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.16 E-value=0.018 Score=58.24 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=55.9
Q ss_pred HHHHHH--HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc--CC
Q 044827 137 FQKVLN--CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW--KN 212 (237)
Q Consensus 137 ~~~i~~--~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~--~~ 212 (237)
++.+.. .+..+..+-|+||+|+||||||..+..... ..| ....++.+...++... ++.+|++.... ..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~ 1486 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQ 1486 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEEC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeec
Confidence 555533 355679999999999999999999877652 222 2345665555555543 45666543221 12
Q ss_pred C-CHHHHHHHHHHHh-hcCCcEEEecC
Q 044827 213 R-SIENEARDIYNIL-RKKKFLLLLDD 237 (237)
Q Consensus 213 ~-~~~~~~~~l~~~l-~~~~~LlvLDd 237 (237)
+ ..++....+.... ..++.+||+|+
T Consensus 1487 ~~~~E~~l~~~~~lvr~~~~~lVVIDs 1513 (2050)
T 3cmu_A 1487 PDTGEQALEICDALARSGAVDVIVVDS 1513 (2050)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESC
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 2 2443333333332 35788999995
No 449
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0033 Score=47.59 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 578999999999999999998764
No 450
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.15 E-value=0.0033 Score=47.30 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 451
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.15 E-value=0.019 Score=50.16 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=53.2
Q ss_pred HHhhcCCEEEEEcCCCCcHHHH-HHHHHhccccCCCcceE-EEEEEeccccC-HHHHHHHHHHHCCCCC-----CCcCCC
Q 044827 142 NCLAENAIIGLYGSGGVGKTTL-LKQINNNFCYGGHNFDI-VIWVVVSKELK-LERIQEDIGKKIRLPT-----DSWKNR 213 (237)
Q Consensus 142 ~~l~~~~vi~IvG~~G~GKTTL-~~~i~~~~~~~~~~f~~-~~~v~v~~~~~-~~~~~~~il~~~~~~~-----~~~~~~ 213 (237)
.-+-.|+.++|+|..|+||||| +..|.+.. ..+. .+++-+.+... ...+.+++.+.=.+.. ...+.+
T Consensus 170 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p 244 (515)
T 2r9v_A 170 IPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDP 244 (515)
T ss_dssp SCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSC
T ss_pred cccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCC
Confidence 3455679999999999999999 67888854 2343 45666666443 3344444443222211 011222
Q ss_pred CHHHH-----HHHHHHHhh--cCCcEEEecC
Q 044827 214 SIENE-----ARDIYNILR--KKKFLLLLDD 237 (237)
Q Consensus 214 ~~~~~-----~~~l~~~l~--~~~~LlvLDd 237 (237)
...+. ...+++++. ++..||++||
T Consensus 245 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Ds 275 (515)
T 2r9v_A 245 ASLQYIAPYAGCAMGEYFAYSGRDALVVYDD 275 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 23333 234555554 5778999997
No 452
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0025 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.++|+|++|+|||||++.+.+..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999865
No 453
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.14 E-value=0.0034 Score=47.32 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.13 E-value=0.0035 Score=47.38 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998864
No 455
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.13 E-value=0.03 Score=56.64 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=59.7
Q ss_pred HHHHHHHH--HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc--
Q 044827 135 ATFQKVLN--CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW-- 210 (237)
Q Consensus 135 ~~~~~i~~--~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~-- 210 (237)
..++.+.. -+..+.++-|.|++|+|||||+..++.... ..| ...+|++....++.. .++.+|++....
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a-~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I 440 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLC 440 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCEE
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH-hcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeEE
Confidence 45665543 466779999999999999999999887662 223 245666665555543 256677653321
Q ss_pred -CCCCHHHHHHHHHHHh-hcCCcEEEec
Q 044827 211 -KNRSIENEARDIYNIL-RKKKFLLLLD 236 (237)
Q Consensus 211 -~~~~~~~~~~~l~~~l-~~~~~LlvLD 236 (237)
...+.++....+...+ ..+..+||+|
T Consensus 441 ~~~~~~e~il~~~~~lv~~~~~~lIVID 468 (2050)
T 3cmu_A 441 SQPDTGEQALEICDALARSGAVDVIVVD 468 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEES
T ss_pred eCCCCHHHHHHHHHHHHHhcCCcEEEEC
Confidence 2234555544444433 4577899998
No 456
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.13 E-value=0.0036 Score=47.07 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998654
No 457
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.12 E-value=0.0021 Score=57.89 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=34.8
Q ss_pred CcccchHHHHHHHHHHhhcCC-------------EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAENA-------------IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~~-------------vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.++|.+.....+...+..+. -+.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 346777777777766666553 68999999999999999998875
No 458
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.12 E-value=0.0035 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998754
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.12 E-value=0.0033 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998864
No 460
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.12 E-value=0.0033 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|+|+|.+|+|||||++.+.+..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999864
No 461
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.12 E-value=0.0034 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|.+|+|||||++.+.+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
No 462
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.11 E-value=0.0033 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998764
No 463
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.11 E-value=0.0032 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998864
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.0037 Score=47.50 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 578999999999999999998754
No 465
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.09 E-value=0.0036 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++.|+||.|+|||||+..++...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 588999999999999999998765
No 466
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0038 Score=46.95 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998764
No 467
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0035 Score=47.03 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
.-.|+|+|..|+|||||++.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999854
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.08 E-value=0.0036 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+|.|+||.|+|||||+..|+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999866
No 469
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.08 E-value=0.026 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|+|.+|+||||++..++...
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998654
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.08 E-value=0.0035 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 471
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.07 E-value=0.0032 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|+|+|..|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998765
No 472
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.07 E-value=0.0034 Score=47.85 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998654
No 473
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.07 E-value=0.0026 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|.+|+|||||++.+++..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987654
No 474
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.06 E-value=0.0061 Score=48.97 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHhhcC-CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 138 QKVLNCLAEN-AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 138 ~~i~~~l~~~-~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+.+...+... ..++++|.+|+|||||++.+.+..
T Consensus 89 ~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 89 VLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhccc
Confidence 4444455544 689999999999999999999865
No 475
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0038 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.|+|+|.+|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999853
No 476
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.04 E-value=0.032 Score=48.25 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++.+..-+..|+++.|.|.+|+|||||+-.++...
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 3566666557778999999999999999998887765
No 477
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.04 E-value=0.0037 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..|+|+|.+|+|||||++.+.+..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 679999999999999999999864
No 478
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.04 E-value=0.0054 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.+|+|+|.+|+|||||+..+....
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998765
No 479
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.04 E-value=0.0034 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++|+|.+|+|||||++.+.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998864
No 480
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.04 E-value=0.0033 Score=47.53 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 481
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.02 E-value=0.0041 Score=47.54 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 578999999999999999998754
No 482
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0039 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999998754
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.02 E-value=0.0028 Score=47.74 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998765
No 484
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.01 E-value=0.0038 Score=48.16 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998753
No 485
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.01 E-value=0.0059 Score=56.46 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=35.3
Q ss_pred CcccchHHHHHHHHHHhhcC-----------CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 128 RTIVGQQATFQKVLNCLAEN-----------AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 128 ~~~~g~~~~~~~i~~~l~~~-----------~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
..++|.+..++.+...+... ..+.++|++|+|||++|+.++...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34788888887777766532 169999999999999999999875
No 486
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.01 E-value=0.0041 Score=47.22 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 578999999999999999988654
No 487
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.00 E-value=0.0034 Score=46.92 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998753
No 488
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.00 E-value=0.026 Score=52.37 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=51.2
Q ss_pred cccchHHHHHHHHHHhhcC---------------CEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHH
Q 044827 129 TIVGQQATFQKVLNCLAEN---------------AIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLE 193 (237)
Q Consensus 129 ~~~g~~~~~~~i~~~l~~~---------------~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~ 193 (237)
.+.|.+...+.+...+.-. .-+.++||+|+|||.||+.+++.. .. .++.++.
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~----- 544 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG----- 544 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH-----
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc-----
Confidence 4556666666665544311 457899999999999999999965 11 1222321
Q ss_pred HHHHHHHHHCCCCCCCcCCCCHHHHHHHHHHHhhcCCcEEEecC
Q 044827 194 RIQEDIGKKIRLPTDSWKNRSIENEARDIYNILRKKKFLLLLDD 237 (237)
Q Consensus 194 ~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvLDd 237 (237)
.+++.. +...+....+..+..+-...|.+|++|+
T Consensus 545 ---~~l~s~-------~vGese~~vr~lF~~Ar~~~P~IifiDE 578 (806)
T 3cf2_A 545 ---PELLTM-------WFGESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp ---HHHHTT-------TCSSCHHHHHHHHHHHHTTCSEEEECSC
T ss_pred ---chhhcc-------ccchHHHHHHHHHHHHHHcCCceeechh
Confidence 122211 1222344455556666666788888875
No 489
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.99 E-value=0.0035 Score=52.97 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 044827 148 AIIGLYGSGGVGKTTLLKQIN 168 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~ 168 (237)
.+..|+|+||+||||++.+|+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999886
No 490
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.97 E-value=0.022 Score=56.75 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHHHHHH--HhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCHHHHHHHHHHHCCCCCCCc--
Q 044827 135 ATFQKVLN--CLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKLERIQEDIGKKIRLPTDSW-- 210 (237)
Q Consensus 135 ~~~~~i~~--~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~~~~~~~il~~~~~~~~~~-- 210 (237)
..++.+.. -+..++++.|.|++|+|||||+..++..... .+. .+.|++........ ..+.+|++....
T Consensus 718 ~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~-~g~--~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i 789 (1706)
T 3cmw_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGK--TCAFIDAEHALDPI-----YARKLGVDIDNLLC 789 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTC--CEEEECTTSCCCHH-----HHHHTTCCGGGCEE
T ss_pred HHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH-cCC--CeEEEeccchHHHH-----HHHHcCCChhheEE
Confidence 34555543 4567799999999999999999999887632 221 34555554444432 156667542221
Q ss_pred -CCCCHHHHHHHHHHHh-hcCCcEEEecC
Q 044827 211 -KNRSIENEARDIYNIL-RKKKFLLLLDD 237 (237)
Q Consensus 211 -~~~~~~~~~~~l~~~l-~~~~~LlvLDd 237 (237)
...+.++....+.+.. ..++.+||+|.
T Consensus 790 ~~~~~leei~~~l~~lv~~~~~~lVVIDs 818 (1706)
T 3cmw_A 790 SQPDTGEQALEICDALARSGAVDVIVVDS 818 (1706)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESC
T ss_pred ecCCcHHHHHHHHHHHHHccCCCEEEEec
Confidence 1224555554454443 35788999994
No 491
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.95 E-value=0.0042 Score=50.18 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 044827 149 IIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 149 vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|+|+|..|+|||||++.+.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 492
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.93 E-value=0.0023 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999874
No 493
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.93 E-value=0.049 Score=47.78 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 136 TFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 136 ~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.++.+..-+..|+++.|.|++|+|||||+..++...
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 345554456778999999999999999998887765
No 494
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.93 E-value=0.0046 Score=47.53 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 147 NAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 147 ~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
+..+.|+|++|+|||||+..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4779999999999999999998753
No 495
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.92 E-value=0.0038 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNN 170 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~ 170 (237)
-.|+|+|..|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999754
No 496
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.91 E-value=0.0048 Score=47.46 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 497
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.91 E-value=0.02 Score=50.65 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcCCEEEEEcCCCCcHHHHHHHHHhccccCCCcceEEEEEEeccccCH
Q 044827 135 ATFQKVLNCLAENAIIGLYGSGGVGKTTLLKQINNNFCYGGHNFDIVIWVVVSKELKL 192 (237)
Q Consensus 135 ~~~~~i~~~l~~~~vi~IvG~~G~GKTTL~~~i~~~~~~~~~~f~~~~~v~v~~~~~~ 192 (237)
..++-+ .-+-.|+.++|+|+.|+|||+|++.|.+.. +-+..+++-+.+....
T Consensus 216 rvID~l-~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~E 267 (588)
T 3mfy_A 216 RVIDTF-FPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNE 267 (588)
T ss_dssp HHHHHH-SCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSH
T ss_pred chhhcc-CCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHH
Confidence 344333 445678999999999999999999998753 2346777777765543
No 498
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0049 Score=46.49 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 499
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.90 E-value=0.0047 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 148 AIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 148 ~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
-.|+|+|..|+|||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 478999999999999999998754
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.89 E-value=0.0051 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcc
Q 044827 146 ENAIIGLYGSGGVGKTTLLKQINNNF 171 (237)
Q Consensus 146 ~~~vi~IvG~~G~GKTTL~~~i~~~~ 171 (237)
.|..|.|.|+.|+||||+++.+....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999877
Done!