Query 044828
Match_columns 617
No_of_seqs 363 out of 1744
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 4.5E-21 1.5E-25 156.1 5.7 61 240-308 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 3.3E-20 1.1E-24 151.0 5.7 60 342-402 2-62 (63)
3 1u3e_M HNH homing endonuclease 93.8 0.0043 1.5E-07 58.2 -2.7 66 310-384 81-146 (174)
4 3igm_B PF14_0633 protein; AP2 86.8 0.16 5.4E-06 43.1 0.6 25 236-260 3-27 (77)
5 3igm_B PF14_0633 protein; AP2 80.2 0.95 3.2E-05 38.5 2.7 28 338-367 3-30 (77)
6 3eik_A Tata-box-binding protei 53.7 37 0.0013 33.7 8.0 129 241-390 77-212 (218)
7 1z1b_A Integrase; protein-DNA 39.7 31 0.0011 33.5 5.1 42 344-390 14-55 (356)
8 1u3e_M HNH homing endonuclease 39.6 1.3 4.3E-05 41.4 -4.7 38 241-290 109-146 (174)
9 2z8u_A Tata-box-binding protei 26.5 3.1E+02 0.011 26.2 9.5 132 241-390 47-182 (188)
10 1ais_A TBP, protein (tata-bind 25.5 2.5E+02 0.0087 26.6 8.6 129 241-391 43-179 (182)
11 1mp9_A Tata-binding protein; t 20.4 3.9E+02 0.013 25.7 8.9 129 241-391 47-183 (198)
12 1z1b_A Integrase; protein-DNA 20.0 1.1E+02 0.0036 29.7 4.9 41 243-296 15-55 (356)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.82 E-value=4.5e-21 Score=156.10 Aligned_cols=61 Identities=34% Similarity=0.668 Sum_probs=56.9
Q ss_pred CeeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcccCCCCC
Q 044828 240 IYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVS 308 (617)
Q Consensus 240 ~YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~~NFP~s 308 (617)
+||||++++| |||+|+|+++. ++|+++|||+|+|+||||+|||.|+++++|..+++|||.+
T Consensus 2 ~yrGV~~r~~-gkw~A~I~~~~-------~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETT-TEEEEEEEETT-------TTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCC-CcEEEEEcccc-------CCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999999988 99999999983 3589999999999999999999999999999999999974
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.80 E-value=3.3e-20 Score=150.97 Aligned_cols=60 Identities=43% Similarity=0.692 Sum_probs=55.0
Q ss_pred cccCeeecccCCeeEeeecccc-CCeeeecCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 044828 342 IYRGVTRHHQHGRWQARIGRVA-GNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMS 402 (617)
Q Consensus 342 kYRGV~r~r~~GKW~A~Ir~~~-~gKri~LGtFdTeEEAArAYD~AAi~l~G~~A~lNFP~s 402 (617)
+||||++ +++|||+|+|+.+. +|+++|||+|+|+||||+|||+|+++++|..++||||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999976 56999999999665 479999999999999999999999999999999999964
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=93.83 E-value=0.0043 Score=58.17 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=49.9
Q ss_pred hhhhhhhhhcccchhhhhhhccccCCcccCcccccCeeecccCCeeEeeeccccCCeeeecCCCCCHHHHHHHHH
Q 044828 310 YEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 384 (617)
Q Consensus 310 YdNELenLRdmTReE~VAnLRRrSsg~sr~tSkYRGV~r~r~~GKW~A~Ir~~~~gKri~LGtFdTeEEAArAYD 384 (617)
-++.+++|+.++..|+..+..+.... ..++||.+ +..++|.+.|. .+ +.++||.|++.+|||++|.
T Consensus 81 ~nn~~~NL~~~t~~eN~~~~~~~~~~-----~~~~g~~~-~~~~k~~~vi~--~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 81 DNNLSTNLRWVTQKINVENQMSRGTL-----NVSKAQQI-AKIKNQKPIIV--IS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp TCCCGGGEEEECHHHHHHHHHHHTCC-----CCHHHHHH-HHHHTCCCEEE--EC-TTSCEEEESCHHHHHHHHT
T ss_pred CCCCHHHcEECCHHHHhhcccccCcc-----cceeeeee-ccCCCCceEEE--Ec-CCceEEeeCCHHHHHHHHC
Confidence 45789999999999998876554311 12467765 55677999885 45 6778999999999999964
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=86.81 E-value=0.16 Score=43.14 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCCCCeeeeeEeCCCCeeEEEEecC
Q 044828 236 QRTSIYRGVTRHRWTGRYEAHLWDN 260 (617)
Q Consensus 236 ~rtS~YRGVrrrk~~GKW~A~I~~~ 260 (617)
...|+|.||+|+++.+.|.|.-.++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 3578999999999999999998776
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=80.21 E-value=0.95 Score=38.46 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=22.5
Q ss_pred cCcccccCeeecccCCeeEeeeccccCCee
Q 044828 338 RGASIYRGVTRHHQHGRWQARIGRVAGNKD 367 (617)
Q Consensus 338 r~tSkYRGV~r~r~~GKW~A~Ir~~~~gKr 367 (617)
..+|+|.||+|.+..+.|.|.-. .+|++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFY--DGASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEE--ETTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEe--cCCeE
Confidence 45689999999999999999874 45554
No 6
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=53.71 E-value=37 Score=33.65 Aligned_cols=129 Identities=10% Similarity=0.132 Sum_probs=79.3
Q ss_pred eeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcccCCCCCchhhhhhhhh--
Q 044828 241 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMK-- 318 (617)
Q Consensus 241 YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~~NFP~sdYdNELenLR-- 318 (617)
|-||..|-..-|-.+-||.. ||-+.-|. .++|+|..|.++.+..+..-.....|+ ++. +.++-
T Consensus 77 Fpglv~Rl~~Pk~t~LIF~S----------GKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~--~fk--IqNIvas 141 (218)
T 3eik_A 77 FAAVIMRIREPKTTALIFAS----------GKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFD--DFK--IQNIVSS 141 (218)
T ss_dssp CSSEEEEETTTTEEEEECTT----------SEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCE--EEE--EEEEEEE
T ss_pred CceEEEEecCCcEEEEEECC----------CeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccc--cce--EEEEEEE
Confidence 67887777667888889764 88777665 579999999999888775322222222 111 11111
Q ss_pred -----cccchhhhhhhccccCCcccCcccccCeeecccCCeeEeeeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 044828 319 -----NMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 390 (617)
Q Consensus 319 -----dmTReE~VAnLRRrSsg~sr~tSkYRGV~r~r~~GKW~A~Ir~~~~gKri~LGtFdTeEEAArAYD~AAi~l 390 (617)
.+..+......+... .=.-..|-||.++-..-|=..-| ...||-+..|. .++||+.+|++.-.-.|
T Consensus 142 ~dl~f~I~Le~la~~~~~~~---~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 142 CDIKFSIRLEGLAYAHSNYC---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp EECSSCBCHHHHHHHSTTTE---ECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred EECCCcCcHHHHHHhccCCc---EECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 111122221111111 11234688986655566677888 47888888887 88999999998776554
No 7
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=39.73 E-value=31 Score=33.50 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=30.5
Q ss_pred cCeeecccCCeeEeeeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 044828 344 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 390 (617)
Q Consensus 344 RGV~r~r~~GKW~A~Ir~~~~gKri~LGtFdTeEEAArAYD~AAi~l 390 (617)
.||+ .+..|+|+.+++ .+||++.+|. |.+||..+..++...+
T Consensus 14 ~~v~-~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLY-IRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEE-EETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccce-ecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 4774 456789998874 6788999996 8888877766554443
No 8
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=39.58 E-value=1.3 Score=41.36 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=27.5
Q ss_pred eeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHH
Q 044828 241 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYD 290 (617)
Q Consensus 241 YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD 290 (617)
++||.+ +..++|.+.|..+ +.++||.|++.+|||++|.
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-----------~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-----------PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-----------TTSCEEEESCHHHHHHHHT
T ss_pred eeeeee-ccCCCCceEEEEc-----------CCceEEeeCCHHHHHHHHC
Confidence 467766 3346788888653 3456899999999999864
No 9
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=26.52 E-value=3.1e+02 Score=26.23 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=73.6
Q ss_pred eeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcc-cCCCCCchhhhhh--hh
Q 044828 241 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTT-TNFPVSNYEKELE--DM 317 (617)
Q Consensus 241 YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~-~NFP~sdYdNELe--nL 317 (617)
|-||..|-+.-|=.+-||.. ||-+--|. .++|+|..|.++.+..+..-.-. ..|+.-.-.|-.. .+
T Consensus 47 fpgli~Rl~~Pk~t~lIF~S----------GKiv~TGA-kS~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l 115 (188)
T 2z8u_A 47 FPGLVCRLSVPKVALLIFRS----------GKVNCTGA-KSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADL 115 (188)
T ss_dssp --CEEEEETTTTEEEEECTT----------SEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEEC
T ss_pred cccEEEEcCCCcEEEEEeCC----------CeEEEecC-CCHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEec
Confidence 77888777667778888754 77766554 56788888888877666321110 1122111111110 00
Q ss_pred h-cccchhhhhhhccccCCcccCcccccCeeecccCCeeEeeeccccCCeeeecCCCCCHHHHHHHHHHHHHHh
Q 044828 318 K-NMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 390 (617)
Q Consensus 318 R-dmTReE~VAnLRRrSsg~sr~tSkYRGV~r~r~~GKW~A~Ir~~~~gKri~LGtFdTeEEAArAYD~AAi~l 390 (617)
. .+..+.....++. ..=.-..|-||.++-..-|-.+-| ...||-+..|. .++||+..|+++....|
T Consensus 116 ~~~i~L~~la~~~~~----~eYePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 116 GIEPNLDDIALMVEG----TEYEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp SSCCCHHHHHHHSTT----EEECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHhhCcC----cEECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 0 1111111111111 111234688986555566777888 47888887775 68899999998876655
No 10
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=25.53 E-value=2.5e+02 Score=26.65 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=75.8
Q ss_pred eeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcccCCCCCc-hhhhhhhhh-
Q 044828 241 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPVSN-YEKELEDMK- 318 (617)
Q Consensus 241 YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~~NFP~sd-YdNELenLR- 318 (617)
|-||..|-..-+=.+-||.. ||-+--| ..++|+|.+|.++.+..+.. ++|+... .+=.+.+.-
T Consensus 43 fpgli~Rl~~P~~t~lIF~S----------GKiv~TG-akS~~~~~~a~~~i~~~L~~----lG~~~~~~~~~~I~NIVa 107 (182)
T 1ais_A 43 FPGIICHLDDPKVALLIFSS----------GKLVVTG-AKSVQDIERAVAKLAQKLKS----IGVKFKRAPQIDVQNMVF 107 (182)
T ss_dssp CSSEEEECSSSCCEEEECTT----------SEEEEEE-ESSHHHHHHHHHHHHHHHHH----TTCCCSSSCEEEEEEEEE
T ss_pred cccEEEEcCCCcEEEEEeCC----------CeEEEec-CCCHHHHHHHHHHHHHHHHH----cCCCcccccceEEEEEEE
Confidence 77888777666778888754 6665444 57889999999988776643 2232100 000111110
Q ss_pred ------cccchhhhhhhccccCCcccCcccccCeeecccCCeeEeeeccccCCeeeecCCCCCHHHHHHHHHHHHHHhc
Q 044828 319 ------NMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFR 391 (617)
Q Consensus 319 ------dmTReE~VAnLRRrSsg~sr~tSkYRGV~r~r~~GKW~A~Ir~~~~gKri~LGtFdTeEEAArAYD~AAi~l~ 391 (617)
.+..+.....++ . ..=.-..|-|+.++-..-|-.+-|. ..||-+..|. .++||+.+|.++-...|.
T Consensus 108 s~~l~~~i~L~~la~~~~-~---~~YePe~fpgli~R~~~pk~~~lIF--~SGKiviTGa-ks~~~~~~a~~~i~~~L~ 179 (182)
T 1ais_A 108 SGDIGREFNLDVVALTLP-N---CEYEPEQFPGVIYRVKEPKSVILLF--SSGKIVCSGA-KSEADAWEAVRKLLRELD 179 (182)
T ss_dssp EEECSSCCCHHHHHHHST-T---EECCTTTCSSEEEEETTTTEEEEEC--TTSEEEEEEE-SSHHHHHHHHHHHHHHHT
T ss_pred EEEcCCccCHHHHHhhCC-C---CEECCccCceEEEEeCCCcEEEEEe--cCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 111111111111 1 1122356889865555566778884 7788777775 688999999988776663
No 11
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=20.36 E-value=3.9e+02 Score=25.73 Aligned_cols=129 Identities=9% Similarity=0.088 Sum_probs=76.7
Q ss_pred eeeeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhccCCCcccCCCC---Cchh--hhhh
Q 044828 241 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKYWGPTTTTNFPV---SNYE--KELE 315 (617)
Q Consensus 241 YRGVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl~G~~A~~NFP~---sdYd--NELe 315 (617)
|-||..|-+.-|=.+-||.. ||-+--|. .++|+|..|.++.+..+.. ++|+. .++. |-..
T Consensus 47 fpgli~Rl~~Pk~t~lIF~S----------GKiv~TGa-kS~e~a~~a~~~i~~~L~~----lG~~~~~~~~~~I~NIVa 111 (198)
T 1mp9_A 47 FPGLIFRLESPKITSLIFKS----------GKMVVTGA-KSTDELIKAVKRIIKTLKK----YGMQLTGKPKIQIQNIVA 111 (198)
T ss_dssp CSSEEEEETTTTEEEEECTT----------SEEEEECC-SSHHHHHHHHHHHHHHHHH----TTCCCSSCCEEEEEEEEE
T ss_pred ccceEEEcCCCceEEEEeCC----------CeEEEecc-CCHHHHHHHHHHHHHHHHH----cCCcccCcCceEEEEEEE
Confidence 77887777667778888764 77776665 5678888888887766643 23331 1111 1110
Q ss_pred --hhh-cccchhhhhhhccccCCcccCcccccCeeecccCCeeEeeeccccCCeeeecCCCCCHHHHHHHHHHHHHHhc
Q 044828 316 --DMK-NMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFR 391 (617)
Q Consensus 316 --nLR-dmTReE~VAnLRRrSsg~sr~tSkYRGV~r~r~~GKW~A~Ir~~~~gKri~LGtFdTeEEAArAYD~AAi~l~ 391 (617)
.+. .+..+.....++ . ..=.-..|-||.++-..-|-.+-| ...||-+..|. .++||+.+|.++-...|.
T Consensus 112 s~~l~~~i~L~~la~~~~-~---~~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 112 SANLHVIVNLDKAAFLLE-N---NMYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp EEECSSEECHHHHHHHSS-S---EECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHhhcC-C---cEECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 000 111111211111 1 112235688986555566777888 47788877775 678899999988777663
No 12
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=20.04 E-value=1.1e+02 Score=29.73 Aligned_cols=41 Identities=12% Similarity=-0.020 Sum_probs=27.9
Q ss_pred eeeEeCCCCeeEEEEecCCCcccccccCCeEeecCCCCCHHHHHHHHHHHHhhc
Q 044828 243 GVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGKYSGYDKEEKAARAYDLAALKY 296 (617)
Q Consensus 243 GVrrrk~~GKW~A~I~~~s~r~~G~srkGkri~LGtFdTeEeAArAYD~AAlkl 296 (617)
||++++. |+|...... .||++.+|. +..||..+..++...+
T Consensus 15 ~v~~~~~-g~~~~r~~~----------~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNN-GYYCYRDPR----------TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETT-TEEEEECTT----------TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCC-CeEEEEeec----------CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5766665 899876532 477788886 8888877766654444
Done!