BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044830
(801 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 222/762 (29%), Positives = 331/762 (43%), Gaps = 108/762 (14%)
Query: 21 WNKDGDCCSWDGIICDEMTGHVIGLDLSSSWL-LGTLHPNSTXXXXXXXXXXXXACNDFN 79
W+ + + C++DG+ C + V +DLSS L +G +S+ + + N
Sbjct: 33 WSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90
Query: 80 GTKISSNFGQFTKLTHLNLSFSYFSGIVP--SQISRLSKLVALDLSSDIPRTKFEQHTFN 137
G+ S F LT L+LS + SG V + + S L L++SS+ F
Sbjct: 91 GSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT--LDFPGKVSG 146
Query: 138 NLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLR 197
L N E+ L +++ +VV GN + G+ +D+ L
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGD--VDVSRCVNLE 203
Query: 198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ 257
L +S N TG +P S L+ LD+S K SG I +LK L++ F G
Sbjct: 204 FLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVF-GNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
+P LK L L+L +N+F+GE PD G LT + L+ +F G +P + + L
Sbjct: 263 IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 317 SLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
L LS N F G+LP L L L N G +P L NLS S L+ LDLS+N
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS--LLTLDLSSN 378
Query: 375 KLTGQIF-QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
+G I L Q P N LQ L + +N TG+ P
Sbjct: 379 NFSGPILPNLCQNP---------------KNTLQE-----------LYLQNNGFTGKIPP 412
Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
++ N S + L+LS N LSG IP L + L L L N G IPQ L L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
L+ N+L G++P L+NC +L + + NN++ P W L L +L L +NSF G
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---- 528
Query: 554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQ---------------------SLKAMMH 592
N+P+ L +D++ N F G +PA F+ +K H
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 593 GDNDDIDLDYMNS-------------------AGY--------------DQYYSMILTYK 619
G + ++ + S G+ D Y+M+ Y
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY- 647
Query: 620 GVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679
+ E+ + +F ++L +N G IP EVG L L +L+ S N L G IP +++LT
Sbjct: 648 -IPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 680 LSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQ 721
L+ ++LS N L GPIP+ QF++F F+ N GLCG+ L +
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 222/762 (29%), Positives = 331/762 (43%), Gaps = 108/762 (14%)
Query: 21 WNKDGDCCSWDGIICDEMTGHVIGLDLSSSWL-LGTLHPNSTXXXXXXXXXXXXACNDFN 79
W+ + + C++DG+ C + V +DLSS L +G +S+ + + N
Sbjct: 30 WSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 87
Query: 80 GTKISSNFGQFTKLTHLNLSFSYFSGIVP--SQISRLSKLVALDLSSDIPRTKFEQHTFN 137
G+ S F LT L+LS + SG V + + S L L++SS+ F
Sbjct: 88 GSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT--LDFPGKVSG 143
Query: 138 NLAKNLTELRYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFLRGEFPIDIFHFPFLR 197
L N E+ L +++ +VV GN + G+ +D+ L
Sbjct: 144 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGD--VDVSRCVNLE 200
Query: 198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ 257
L +S N TG +P S L+ LD+S K SG I +LK L++ F G
Sbjct: 201 FLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 258 VPASLSNLKQLTVLNLEDNQFSGEFPDVF-GNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
+P LK L L+L +N+F+GE PD G LT + L+ +F G +P + + L
Sbjct: 260 IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 317 SLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374
L LS N F G+LP L L L N G +P L NLS S L+ LDLS+N
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS--LLTLDLSSN 375
Query: 375 KLTGQIF-QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
+G I L Q P N LQ L + +N TG+ P
Sbjct: 376 NFSGPILPNLCQNP---------------KNTLQE-----------LYLQNNGFTGKIPP 409
Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493
++ N S + L+LS N LSG IP L + L L L N G IPQ L L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553
L+ N+L G++P L+NC +L + + NN++ P W L L +L L +NSF G
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---- 525
Query: 554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQ---------------------SLKAMMH 592
N+P+ L +D++ N F G +PA F+ +K H
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 593 GDNDDIDLDYMNS-------------------AGY--------------DQYYSMILTYK 619
G + ++ + S G+ D Y+M+ Y
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY- 644
Query: 620 GVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679
+ E+ + +F ++L +N G IP EVG L L +L+ S N L G IP +++LT
Sbjct: 645 -IPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 680 LSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQ 721
L+ ++LS N L GPIP+ QF++F F+ N GLCG+ L +
Sbjct: 703 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 122/294 (41%), Gaps = 57/294 (19%)
Query: 431 FPSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL 489
PSS+ NL + +L + N+L G IP +A L L + G+IP S+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL-QVLVLRSNSFH 548
V L+ + N L G LPPS+++ +L + N+I+ A P + +L + + N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 549 G---PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNS 605
G P + N+ L +D+SRN M+ GD
Sbjct: 188 GKIPPTFANL--------NLAFVDLSRN----------------MLEGD----------- 212
Query: 606 AGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNI 665
S++ G D ++ I L+ N + K VG +L L+ +N
Sbjct: 213 ------ASVLF---GSDKNTQK-------IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255
Query: 666 LRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFAL 719
+ G +P LT L L LN+SFN L G IPQG F ++ N LCG L
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 55/273 (20%)
Query: 186 FPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWS-SPLRILDLSITKFSGKIPDTIGNLRDL 244
P + + P+L L + L G +P + + L L ++ T SG IPD + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304
LD G +P S+S+L L + + N+ SG PD +G+ SKL FT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL---------FTS 178
Query: 305 QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSE 364
+ +SRN+ G++P + L L+ + L N L+G S LF + +
Sbjct: 179 --------------MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA-SVLF--GSDK 221
Query: 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSD 424
N ++ L+ N L + +L + + NL L + +
Sbjct: 222 NTQKIHLAKNSL----------------AFDLGKVGLSKNL------------NGLDLRN 253
Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ 457
N++ G P + L + LN+S N+L G IPQ
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 120/270 (44%), Gaps = 40/270 (14%)
Query: 258 VPASLSNLKQLTVLNLED-NQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316
+P+SL+NL L L + N G P L++L + + H N +G +P + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 317 SLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375
L+ S N G LP S LP L + GN + G IP S S+ + +S N+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRNR 185
Query: 376 LTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI 435
LTG+I P + + F+ +S N L G+
Sbjct: 186 LTGKI----------------------------PPTFANLNLAFVDLSRNMLEGDASVLF 217
Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
+ + ++L+ NSL+ + + + +L+ LDLR N+ G++PQ ++ L +LN++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 496 DNELEGKLPPSLANCGDLEVLDV---GNNK 522
N L G++P G+L+ DV NNK
Sbjct: 277 FNNLCGEIPQG----GNLQRFDVSAYANNK 302
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 144/382 (37%), Gaps = 52/382 (13%)
Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV--PASLSNLKQLTVLNLEDNQ 277
LRILDL +K PD L L L LY C V NLK LT L+L NQ
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 278 FSGEFPD-VFGNLSKLTRISLA--HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH- 333
+ FG L+ L I + + + L LS L+ N ++
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194
Query: 334 ASCL-PLSHLKL--------------GGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378
C+ P ++ L GNF + S F+L + +++ + +
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRI-------RFLSVSDNKLTGEF 431
DQ ++ +RHLD+ + F L+SR+ + L+++ NK+
Sbjct: 255 P----DQNTFAGLARSSVRHLDLSHGFV----FSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
+ L ++ LNLS N L + ++ +DL+KN Q F L
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 492 LNLNDNELEG-----KLPPSLANCGDL----------EVLDVGNNKI-NDAFPYWTATLP 535
L+L DN L +P + L ++ + N++ N Y+ +P
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 536 RLQVLVLRSNSFHGPIYNNVPS 557
LQ+L+L N F + PS
Sbjct: 427 HLQILILNQNRFSSCSGDQTPS 448
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 38/221 (17%)
Query: 489 LVALNLNDNELEG-KLPPSLANCGDLEVLDVGNNKINDAFPYWTATL--PRLQVLVLRSN 545
L L+L+ N++ L PS L+ +D +N+I + L L L +N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 546 SFHGPIYNNVPSIKRPFPE--LRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYM 603
S + + + PF L I+D+S NG+T DI ++
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-------------------DITGNFS 225
Query: 604 NSAGYDQYYSMILTYK--GVDLEMERV----LNIFT--------TIDLSNNRFEGMIPKE 649
N+ Q +S+IL + G + N F +DLS+ + +
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Query: 650 VGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
L LK+LN ++N + L L VLNLS+N L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 128/538 (23%), Positives = 218/538 (40%), Gaps = 109/538 (20%)
Query: 194 PFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253
P + L+LS N + +P ++ S LR+L LS + +DL++LD+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 254 FDGQVPASLSNLKQLTVLNLEDNQFSG-EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN 312
+++L+ L +L N F FGNL+KLT F G LSA
Sbjct: 112 LQNISCCPMASLRHL---DLSFNDFDVLPVCKEFGNLTKLT--------FLG---LSAAK 157
Query: 313 LTQLSLLELSRNQFVGQLPCHASCLPLS----HLKLGGNFLDGRIPSWLFNLSTSENLVE 368
QL LL ++ H SC+ L H+K GG +IP + ++
Sbjct: 158 FRQLDLLPVAH--------LHLSCILLDLVSYHIK-GGETESLQIP--------NTTVLH 200
Query: 369 LDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIR---FLSVSDN 425
L N L + V + ++L ++ + QRL LS R L+V+
Sbjct: 201 LVFHPNSLFSVQVNMS---VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257
Query: 426 KLTGEFPSSICNLS-----TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR----KNQF- 475
+ + S+ +EYLN+ N +++ I + + +L L KNQ
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317
Query: 476 ---RGSIPQIFSKCYDLVALNLNDNE-LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT 531
+ ++ +F++ ++ L+++D + PPS ++ L+ N D+
Sbjct: 318 LFSKEALYSVFAE-MNIKMLSISDTPFIHMVCPPSPSS---FTFLNFTQNVFTDSVFQGC 373
Query: 532 ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM 591
+TL RLQ L+L+ N +N F L + SL+ +
Sbjct: 374 STLKRLQTLILQRNGL------------------------KNFFKVALMTKNMSSLETL- 408
Query: 592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG 651
D+ L+ +NS YD+ + E VLN+ + + L+ + F + PK
Sbjct: 409 -----DVSLNSLNSHAYDRTCAWA--------ESILVLNLSSNM-LTGSVFRCLPPK--- 451
Query: 652 KLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFI 709
+K+L+ HN IP ++T L AL LN++ NQL +P G FD + +I
Sbjct: 452 ----VKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL-KSVPDGV-FDRLTSLQYI 502
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 415 SRIRFLSVSDNKLTGEFPSSICNLS-TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
S + L VS N L C + +I LNLS+N L+G + +CL + +LDL N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN 460
Query: 474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTAT 533
+ SIP+ + L LN+ N+L+ L+ + + +N W T
Sbjct: 461 RIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP-------WDCT 512
Query: 534 LPRLQVLVLRSNSFHGPIYNNVPSI 558
P ++ L N G + N+ S+
Sbjct: 513 CPGIRYLSEWINKHSGVVRNSAGSV 537
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
N S L +L ++ F +PD LR+L FLDL C + P + ++L L VLN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 274 EDNQFSGEFPDVFGNLSKLTRI 295
NQ +F L+ L +I
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKI 523
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 122/506 (24%), Positives = 193/506 (38%), Gaps = 97/506 (19%)
Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302
+L+ LDL C + +L L+ L L N F LS L ++
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE--- 109
Query: 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG-RIPSWLFNLS 361
T L+ LE N +G L L L + N + ++P + NL+
Sbjct: 110 -----------TNLASLE---NFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 362 TSENLVELDLSNNKLTG----QIFQLDQWPVE----------------------RISSVE 395
NL LDLS+NK+ + L Q P+ R+ +
Sbjct: 150 ---NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 396 LRH----LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS----ICNLSTIEYLNLS 447
LR+ L+V +Q L + R+ + +F S +CNL TIE L+
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEFRLA 265
Query: 448 --NNSLSGMIP--QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL 503
+ L +I CL N S SL+ + + + FS + L L + + G+
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQF 319
Query: 504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN--SFHGPIYNNVPSIKRP 561
P L+ L +NK +AF LP L+ L L N SF G +
Sbjct: 320 PT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-- 373
Query: 562 FPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMI-LTYKG 620
L+ +D+S NG + + F L+ + H D +L M + + + S+ L Y
Sbjct: 374 --SLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLD 427
Query: 621 VDLEMERV--------LNIFTTIDLSNNRF-EGMIPKEVGKLSSLKLLNFSHNILRGEIP 671
+ RV L+ + ++ N F E +P +L +L L+ S L P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 672 VELTSLTALSVLNLSFNQLVGPIPQG 697
SL++L VLN++ NQL +P G
Sbjct: 488 TAFNSLSSLQVLNMASNQL-KSVPDG 512
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 107/256 (41%), Gaps = 21/256 (8%)
Query: 237 TIGNLRDLKF------LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLS 290
TI ++D + L+L C F GQ P LK L L N+ F +V +L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKF-GQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLP 347
Query: 291 KLTRISLAH--LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNF 348
L + L+ L+F G S F T L L+LS N + L HL +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 349 LDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR 408
L +F + NL+ LD+S+ T F +SS+E+ + S
Sbjct: 408 LKQMSEFSVF--LSLRNLIYLDISHTH-TRVAFN---GIFNGLSSLEVLKMAGNSFQENF 461
Query: 409 LPFILSS--RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLS 466
LP I + + FL +S +L P++ +LS+++ LN+++N L + SL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 467 LLDLRKNQFRGSIPQI 482
+ L N + S P+I
Sbjct: 522 KIWLHTNPWDCSCPRI 537
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
N S L +L ++ F +PD LR+L FLDL C + P + ++L L VLN+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 274 EDNQFSG--EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
N F FP N ++ SL H+ + + L F + L+ L L++N F
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFA 261
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAH--LNFTGQLPLSAFNLTQLSLLELSRNQF 326
T L LE N+ VF L++LT++SL+ L+F G S F T L L+LS N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 327 VGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW 386
+ L HL + L +F LS NL+ LD+S+ T F
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSL-RNLIYLDISHTH-TRVAFN---G 144
Query: 387 PVERISSVELRHLDVQSNLLQR--LPFILSS--RIRFLSVSDNKLTGEFPSSICNLSTIE 442
+SS+E+ L + N Q LP I + + FL +S +L P++ +LS+++
Sbjct: 145 IFNGLSSLEV--LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 443 YLNLSNN---SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
LN+S+N SL +CL +SL +LD N S Q
Sbjct: 203 VLNMSHNNFFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQ 241
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 395 ELRHLDVQ-SNLLQRLPFILSSRIR---FLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS 450
+L HLD Q SNL Q F + +R +L +S F LS++E L ++ NS
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 451 LSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANC 510
NF +P IF++ +L L+L+ +LE P + +
Sbjct: 162 FQ-------ENF----------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 511 GDLEVLDVGNNKIN--DAFPYWTATLPRLQVL 540
L+VL++ +N D FPY L LQVL
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPY--KCLNSLQVL 228
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 240 NLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF-PDVFGNLSKLTRISLA 298
+LR+L +LD+ + + L L VL + N F F PD+F L LT + L+
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 299 HLNFTGQLPLSAFN-LTQLSLLELSRNQF 326
QL +AFN L+ L +L +S N F
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 38/245 (15%)
Query: 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG--DLEVLDVGNN 521
S + L+L N+ + +F K L L+L+ N L K S ++ G L+ LD+ N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPA 581
+ + S++F G +L +D + +
Sbjct: 89 GV-----------------ITMSSNFLG------------LEQLEHLDFQHSNLKQMSEF 119
Query: 582 RYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM-ILTYKGVDLEMERVLNIFTTI----- 635
F SL+ +++ D + ++ S+ +L G + + +IFT +
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 636 -DLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPI 694
DLS + E + P LSSL++LN SHN L +L VL+ S N ++
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 695 PQGKQ 699
Q Q
Sbjct: 240 KQELQ 244
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
N S L +L ++ F +PD LR+L FLDL C + P + ++L L VLN+
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 274 EDNQFSG--EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
N F FP N ++ SL H+ + + L F + L+ L L++N F
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFA 580
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 122/524 (23%), Positives = 194/524 (37%), Gaps = 104/524 (19%)
Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302
+L+ LDL C + +L L+ L L N F LS L ++
Sbjct: 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE--- 133
Query: 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG-RIPSWLFNLS 361
T L+ LE N +G L L L + N + ++P + NL+
Sbjct: 134 -----------TNLASLE---NFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLT 173
Query: 362 TSENLVELDLSNNKLTG----QIFQLDQWPVE----------------------RISSVE 395
NL LDLS+NK+ + L Q P+ R+ +
Sbjct: 174 ---NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 230
Query: 396 LRH----LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS----ICNLSTIEYLNLS 447
LR+ L+V +Q L + R+ + +F S +CNL TIE L+
Sbjct: 231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEFRLA 289
Query: 448 --NNSLSGMIP--QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL 503
+ L G+I CL N S SL+ + + + FS + L L + + G+
Sbjct: 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQF 343
Query: 504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN--SFHGPI---------- 551
P L+ L +NK +AF LP L+ L L N SF G
Sbjct: 344 PT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399
Query: 552 ------YNNVPSIKRPF---PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY 602
+N V ++ F +L +D + + F SL+ +++ D
Sbjct: 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 603 MNSAGYDQYYSM-ILTYKGVDLEMERVLNIFTTI------DLSNNRFEGMIPKEVGKLSS 655
+ ++ S+ +L G + + +IFT + DLS + E + P LSS
Sbjct: 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519
Query: 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQ 699
L++LN SHN L +L VL+ S N ++ Q Q
Sbjct: 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 27/258 (10%)
Query: 237 TIGNLRDLKF------LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLS 290
TI ++D + L+L C F GQ P LK L L N+ F +V +L
Sbjct: 317 TIERVKDFSYNFGWQHLELVNCKF-GQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLP 371
Query: 291 KLTRISLAH--LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNF 348
L + L+ L+F G S F L L+LS N + L HL +
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431
Query: 349 LDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR 408
L +F + NL+ LD+S+ T F +SS+E+ + S
Sbjct: 432 LKQMSEFSVF--LSLRNLIYLDISHTH-TRVAFN---GIFNGLSSLEVLKMAGNSFQENF 485
Query: 409 LPFILSS--RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN---SLSGMIPQCLANFD 463
LP I + + FL +S +L P++ +LS+++ LN+S+N SL +CL +
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL---N 542
Query: 464 SLSLLDLRKNQFRGSIPQ 481
SL +LD N S Q
Sbjct: 543 SLQVLDYSLNHIMTSKKQ 560
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 215 NWSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNL 273
N S L +L ++ F +PD LR+L FLDL C + P + ++L L VLN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 274 EDNQFSG--EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
N F FP N ++ SL H+ + + L F + L+ L L++N F
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFA 556
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 121/524 (23%), Positives = 193/524 (36%), Gaps = 104/524 (19%)
Query: 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302
+L+ LDL C + +L L+ L L N F LS L ++
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE--- 109
Query: 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG-RIPSWLFNLS 361
T L+ LE N +G L L L + N + ++P + NL+
Sbjct: 110 -----------TNLASLE---NFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 362 TSENLVELDLSNNKLTG----QIFQLDQWPVE----------------------RISSVE 395
NL LDLS+NK+ + L Q P+ R+ +
Sbjct: 150 ---NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 396 LRH----LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS----ICNLSTIEYLNLS 447
LR+ L+V +Q L + R+ + +F S +CNL TIE L+
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIEEFRLA 265
Query: 448 --NNSLSGMIP--QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL 503
+ L +I CL N S SL+ + + + FS + L L + + G+
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQF 319
Query: 504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN--SFHGPI---------- 551
P L+ L +NK +AF LP L+ L L N SF G
Sbjct: 320 PT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 552 ------YNNVPSIKRPF---PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY 602
+N V ++ F +L +D + + F SL+ +++ D
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 603 MNSAGYDQYYSM-ILTYKGVDLEMERVLNIFTTI------DLSNNRFEGMIPKEVGKLSS 655
+ ++ S+ +L G + + +IFT + DLS + E + P LSS
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQ 699
L++LN SHN L +L VL+ S N ++ Q Q
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 31/260 (11%)
Query: 237 TIGNLRDLKF------LDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLS 290
TI ++D + L+L C F GQ P LK L L N+ F +V +L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKF-GQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLP 347
Query: 291 KLTRISLAH--LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNF 348
L + L+ L+F G S F T L L+LS N + L HL +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 349 LDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR 408
L +F + NL+ LD+S+ T F +SS+E+ L + N Q
Sbjct: 408 LKQMSEFSVF--LSLRNLIYLDISHTH-TRVAFN---GIFNGLSSLEV--LKMAGNSFQE 459
Query: 409 --LPFILSS--RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN---SLSGMIPQCLAN 461
LP I + + FL +S +L P++ +LS+++ LN+S+N SL +CL
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL-- 517
Query: 462 FDSLSLLDLRKNQFRGSIPQ 481
+SL +LD N S Q
Sbjct: 518 -NSLQVLDYSLNHIMTSKKQ 536
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 13/192 (6%)
Query: 368 ELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLS---VSD 424
+LDL +NKL+ L R++ + L +L+ N LQ LP + ++ L V+D
Sbjct: 41 KLDLQSNKLSS----LPSKAFHRLTKLRLLYLN--DNKLQTLPAGIFKELKNLETLWVTD 94
Query: 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFS 484
NKL L + L L N L + P+ + L+ L L N+ + +F
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 485 KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRS 544
K L L L +N+L+ + +L+ L + NN++ +L +L++L L+
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 545 N----SFHGPIY 552
N + +G IY
Sbjct: 215 NPWDCTCNGIIY 226
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 78/193 (40%), Gaps = 33/193 (17%)
Query: 186 FPIDIFH-FPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDL 244
P FH LR L L+DN L T LP + + L +T D
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVT--------------DN 95
Query: 245 KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304
K L + FD V L L L+ NQ P VF +L+KLT +SL + N
Sbjct: 96 KLQALPIGVFDQLV--------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQ 146
Query: 305 QLPLSAFN-LTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLS 361
LP F+ LT L L L NQ ++P A L LKL N L R+P F+
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD-- 202
Query: 362 TSENLVELDLSNN 374
+ E L L L N
Sbjct: 203 SLEKLKMLQLQEN 215
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
Query: 87 FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSD----IPRTKFEQHTFNNLAKN 142
F TKLT+L+L ++ + +L+ L L L ++ +P F++
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK--------- 179
Query: 143 LTELRYLLLDNVQMFSV 159
LTEL+ L LDN Q+ V
Sbjct: 180 LTELKTLKLDNNQLKRV 196
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 564 ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL 623
+LR++ ++ N LPA F+ LK + D L + +DQ ++ +L
Sbjct: 62 KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL------AEL 114
Query: 624 EMER------------VLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP 671
++R L T + L N + + KL+SLK L +N L+
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174
Query: 672 VELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQ 704
LT L L L NQL +P+G FDS +
Sbjct: 175 GAFDKLTELKTLKLDNNQL-KRVPEG-AFDSLE 205
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
L + DN++T P + NL+ I L LS N L + +A S+ LDL Q
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 129
Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
P + +L L L+ N++ P LA +L+ L +GNN++ND P A L +L
Sbjct: 130 P--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPL--ANLSKLTT 183
Query: 540 L 540
L
Sbjct: 184 L 184
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
++I L +S N L + S+I L +I+ L+L++ ++ + P LA +L +L L NQ
Sbjct: 91 TKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 146
Query: 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL 534
P + +L L++ +N++ P LAN L L +NKI+D P A+L
Sbjct: 147 ITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPL--ASL 200
Query: 535 PRLQVLVLRSNSFH--GPIYN 553
P L + L+ N P+ N
Sbjct: 201 PNLIEVHLKDNQISDVSPLAN 221
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 25/253 (9%)
Query: 238 IGNLRDLKFLDLYVCYFDGQVPASLS--NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295
+G D+ D+ F+G S+ NL++ N+ N F F L +L +
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-----HCFSGLQEL-DL 285
Query: 296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIP 354
+ HL +LP L+ L L LS N+F AS P L+HL + GN R+
Sbjct: 286 TATHL---SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKRLE 340
Query: 355 SWLFNLSTSENLVELDLSNNKL-TGQIFQLDQWPVERISSVELRH---LDVQSNLLQRLP 410
L ENL ELDLS++ + T L + + S+ L + L +++ + P
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 411 FILSSRIRFLSVSDNKL-TGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLD 469
++ L ++ +L + S NL ++ LNLS++ L Q +L L+
Sbjct: 401 -----QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 470 LRKNQF-RGSIPQ 481
L+ N F +G+I +
Sbjct: 456 LQGNHFPKGNIQK 468
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 196 LRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDT-IGNLRDLKFLDLYVCYF 254
L+ L LS N L+ L +LDL+ T+ K + NL LK L+L
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
Query: 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLT 314
D L L LNL+ N F +L L R+ + L+F + T
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497
Query: 315 QLSLL---ELSRNQFVGQLPCHASCLPLSHLK-----LGGNFLDGRIPSWLFNLSTSENL 366
L ++ +LS N+ +S LSHLK L N + +PS L LS
Sbjct: 498 SLKMMNHVDLSHNRLTS-----SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT- 551
Query: 367 VELDLSNNKL---TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVS 423
++L N L I+ L +W E + +E D + L + P + R+ +++S
Sbjct: 552 --INLRQNPLDCTCSNIYFL-EWYKENMQKLE----DTEDTLCENPPLLRGVRLSDVTLS 604
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 36/340 (10%)
Query: 370 DLSNNKLTGQIFQ-LDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLT 428
D+ + ++ +F+ L + VE I+ + ++ SN F S ++ L ++ L+
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN-----TFHCFSGLQELDLTATHLS 291
Query: 429 GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCY 487
E PS + LST++ L LS N + +NF SL+ L ++ N R +
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 488 DLVALNLNDNELEGK--LPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
+L L+L+ +++E L N L+ L++ N+ P+L++L L
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 546 SFHGPIYNNVPSIKRPFPELR----------IIDISRNGFTGLLPARYFQSLKAMMHGDN 595
V + PF L ++DIS LPA +L+
Sbjct: 411 RL------KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 596 DDIDLDYMNSAGYDQYYSMILTY---KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK 652
+ + + + G + ++L++ +D L + +DLS+NR + +
Sbjct: 465 NIQKTNSLQTLG--RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR---LTSSSIEA 519
Query: 653 LSSLK--LLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
LS LK LN + N + +P L L+ +NL N L
Sbjct: 520 LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 232 GKIPDTI--GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNL 289
GK D++ G D + LDL A+ L +LT LNL+ NQ VF +L
Sbjct: 23 GKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82
Query: 290 SKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGG 346
++L + LA+ N LPL F+ LTQL L L NQ + LP L L+L
Sbjct: 83 TELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNT 140
Query: 347 NFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
N L IP+ F+ T NL L LS N+L
Sbjct: 141 NQLQ-SIPAGAFDKLT--NLQTLSLSTNQL 167
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 394 VELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS 450
+ LD+QS L L F +++ +L++ N+L +L+ + L L+NN
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 451 LSGMIPQCLANFDSLSLLD---LRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL 507
L+ + L FD L+ LD L NQ + +F + L L LN N+L+ +
Sbjct: 95 LASLP---LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 508 ANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L+ L + N++ L +LQ + L N F
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 16/246 (6%)
Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LT 314
+VPAS+ LNL++N D F +L L + L+ N ++ + AFN L
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSK-NLVRKIEVGAFNGLP 83
Query: 315 QLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
L+ LEL N+ +P A L L L N ++ IPS+ FN S L LDL
Sbjct: 84 SLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPS--LRRLDLG 139
Query: 373 NNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGEF 431
K ++ + + E + V LR+L++ L+ +P + + R+ L +S N+L
Sbjct: 140 ELK---RLEYISEAAFEGL--VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIR 194
Query: 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491
P S L+++ L L + ++ + + SL L+L N +F+ + L
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLER 254
Query: 492 LNLNDN 497
++LN N
Sbjct: 255 VHLNHN 260
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 101/268 (37%), Gaps = 60/268 (22%)
Query: 429 GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYD 488
E P+SI YLNL NS+ + + L +L L KN R F+
Sbjct: 27 AEVPASI--PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN--- 545
L L L DN L +P AF Y L +L+ L LR+N
Sbjct: 85 LNTLELFDNRLT-TVP-------------------TQAFEY----LSKLRELWLRNNPIE 120
Query: 546 SFHGPIYNNVPSIKR-PFPELRIID-ISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYM 603
S +N VPS++R EL+ ++ IS F GL+ RY ++L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY--------------LNLGMC 166
Query: 604 NSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH 663
N ++ V LE ++LS NR + + P L+SL+ L H
Sbjct: 167 NLKDIPNLTAL------VRLE---------ELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 664 NILRGEIPVELTSLTALSVLNLSFNQLV 691
+ L +L LNLS N L+
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLM 239
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 232 GKIPDTI--GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNL 289
GK D++ G D + LDL A+ L +LT LNL+ NQ VF +L
Sbjct: 23 GKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82
Query: 290 SKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGG 346
++L + LA+ N LPL F+ LTQL L L NQ + LP L L+L
Sbjct: 83 TELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNT 140
Query: 347 NFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
N L IP+ F+ T NL L LS N+L
Sbjct: 141 NQLQ-SIPAGAFDKLT--NLQTLSLSTNQL 167
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 394 VELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS 450
+ LD+QS L L F +++ +L++ N+L +L+ + L L+NN
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 451 LSGMIPQCLANFDSLSLLD---LRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL 507
L+ + L FD L+ LD L NQ + +F + L L LN N+L+ +
Sbjct: 95 LASLP---LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 508 ANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L+ L + N++ L +LQ + L N F
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 226 SITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDV 285
S+ IP T + L LY+ P +L QLT LNL NQ + V
Sbjct: 30 SLASVPAGIPTTT------QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV 83
Query: 286 FGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLELSRN 324
F L+KLT ++L H+N +P+ F NL L+ + L N
Sbjct: 84 FDKLTKLTHLAL-HINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%)
Query: 221 RILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG 280
++L L I + + P +L L +L+L V L +LT L L NQ
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 281 EFPDVFGNLSKLTRISL 297
VF NL LT I L
Sbjct: 103 IPMGVFDNLKSLTHIYL 119
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
++ Q L +P + + + L + N++T P +L+ + YLNL+ N L+ +
Sbjct: 24 VNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV 83
Query: 459 LANFDSLSLLDLRKNQFRGSIP 480
L+ L L NQ + SIP
Sbjct: 84 FDKLTKLTHLALHINQLK-SIP 104
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 18/247 (7%)
Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LT 314
+VPAS+ LNL++N D F +L L + L+ N ++ + AFN L
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSK-NLVRKIEVGAFNGLP 83
Query: 315 QLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
L+ LEL N+ +P A L L L N ++ IPS+ FN S L LDL
Sbjct: 84 SLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPS--LRRLDL- 138
Query: 373 NNKLTGQIFQLDQWPVERISS-VELRHLDVQSNLLQRLPFILS-SRIRFLSVSDNKLTGE 430
G++ +L+ V LR+L++ L+ +P + + R+ L +S N+L
Sbjct: 139 -----GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490
P S L+++ L L + ++ + + SL L+L N +F+ + L
Sbjct: 194 RPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLE 253
Query: 491 ALNLNDN 497
++LN N
Sbjct: 254 RVHLNHN 260
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 101/269 (37%), Gaps = 60/269 (22%)
Query: 429 GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYD 488
E P+SI YLNL NS+ + + L +L L KN R F+
Sbjct: 27 AEVPASI--PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN--- 545
L L L DN L +P AF Y L +L+ L LR+N
Sbjct: 85 LNTLELFDNRL-TTVP-------------------TQAFEY----LSKLRELWLRNNPIE 120
Query: 546 SFHGPIYNNVPSIKR-PFPELRIID-ISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYM 603
S +N VPS++R EL+ ++ IS F GL+ RY ++L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY--------------LNLGMC 166
Query: 604 NSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH 663
N ++ V LE ++LS NR + + P L+SL+ L H
Sbjct: 167 NLKDIPNLTAL------VRLE---------ELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 664 NILRGEIPVELTSLTALSVLNLSFNQLVG 692
+ L +L LNLS N L+
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMS 240
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 122/310 (39%), Gaps = 31/310 (10%)
Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPAS--LSNLKQLTVLNLED 275
S L IL L +F L +L+ L L C DG V + L L +L L D
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 276 NQFSGEFP-DVFGNLSKLTRISLAH-----------LNFTGQLPLSAFNLTQLSLLELS- 322
N P F N+ + + L LNF G+ F L +LS + L
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK----HFTLLRLSSITLQD 194
Query: 323 -RNQFVGQLPCHA--SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ 379
++G C ++ L L GN + F+ + L LSN+ G
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254
Query: 380 IF------QLDQWPVERISSVELRHLDV-QSNLLQRLPFILS--SRIRFLSVSDNKLTGE 430
F D + + + + ++ D+ +S + L + S + + L+++ N++
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490
++ L+ + LNLS N L + + N D L +LDL N R Q F +L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Query: 491 ALNLNDNELE 500
L L+ N+L+
Sbjct: 375 ELALDTNQLK 384
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 84/390 (21%), Positives = 143/390 (36%), Gaps = 77/390 (19%)
Query: 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPA------SLSNLKQLTVLNLEDN 276
+DLS+ + + L+DL+FL + + Q P + L L +L L+ N
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKV-----EQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF--NLTQLSLLELSRNQFVGQLPCHA 334
QF F L+ L ++L N G + F LT L +L L N
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN--------- 140
Query: 335 SCLPLSHLKLGGNFLDGRIPSWL-FNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS 393
+ ++ FL+ R L + +++ E DL N FQ + + R+SS
Sbjct: 141 ----IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN-------FQGKHFTLLRLSS 189
Query: 394 VELRH----------------------LDVQSNLLQR------LPFILSSRIRFLSVSDN 425
+ L+ LD+ N + I ++I+ L +S++
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249
Query: 426 KLTGE------------FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
G F S ++ +LS + + ++ ++F L L L +N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
Query: 474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTAT 533
+ F L+ LNL+ N L N LEVLD+ N I
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369
Query: 534 LPRLQVLVLRSNSFHG---PIYNNVPSIKR 560
LP L+ L L +N I++ + S+++
Sbjct: 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQK 399
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 115/318 (36%), Gaps = 44/318 (13%)
Query: 406 LQRLPFI-LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS 464
LQ L F+ + + L + +N G I L ++L L + +G LAN
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-----LAN--- 104
Query: 465 LSLLDLRKNQFRGSI--PQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNN 521
L +L L + G++ F L L L DN ++ P S N VLD+ N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 522 KINDA-------FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRI--IDISR 572
K+ F TL RL + L+ + PF I +D+S
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQD---MNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 573 NGFTGLLPARYFQSLKA-------MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGV---D 622
NGF + R+F ++ + + N + N D + L GV D
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 623 LEMERVLNIFTTI----------DLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPV 672
L ++ + ++ L+ N + L+ L LN S N L
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 673 ELTSLTALSVLNLSFNQL 690
+L L VL+LS+N +
Sbjct: 342 MFENLDKLEVLDLSYNHI 359
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLT 293
+P +I NL++LK L + PA + +L +L L+L +P +FG + L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 294 RISLAHLNFTGQLPLSAFNLTQLSLLE------LSR-NQFVGQLPCHASCLPLSHLK 343
R+ L + LPL LTQL L+ LSR + QLP + L HL+
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 430 EFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKC--- 486
E P + + +E L L+ N L + P +A+ + L L +R +P+ +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 487 -YDLVALNLNDNELE----GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLV 541
+NL LE LP S+AN +L+ L + N+ ++ P LP+L+ L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELD 235
Query: 542 LRSNSF---HGPIYNNVPSIKR 560
LR + + PI+ +KR
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKR 257
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 396 LRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
L +L + N LQ LP F + ++ L + +N+L L+ + YL L +N L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500
+ +L+ LDL NQ + +F K L L+LNDN+L+
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSL 465
+Q LP +R+L++ NKL S++ L+ + YL L+ N L + +L
Sbjct: 59 IQYLP-----NVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 466 SLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523
L L +NQ + +F K +L L L N+L+ +L LD+ NN++
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 236 DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295
D + NL++L ++ + V L+NL T L L NQ VF L+ LTR+
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNL---TYLYLYHNQLQSLPKGVFDKLTNLTRL 162
Query: 296 SLAHLNFTGQLPLSAFN-LTQLSLLELSRNQF 326
L + N LP F+ LTQL L L+ NQ
Sbjct: 163 DLDN-NQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LT 314
VP + Q VL L DNQ + P VF L++LTR+ L + T LP F+ LT
Sbjct: 22 ASVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 315 QLSLLELSRNQF 326
QL+ L L+ NQ
Sbjct: 79 QLTQLSLNDNQL 90
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
+T + L L +N ++ + P L+ LDL NQ +F K L L+LNDN+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 499 LE 500
L+
Sbjct: 90 LK 91
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 254 FDGQV----PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS 309
+D Q+ P L QLT L+L++NQ + VF L++LT++SL N +P
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRG 96
Query: 310 AF-NLTQLSLLELSRNQF 326
AF NL L+ + L N +
Sbjct: 97 AFDNLKSLTHIWLLNNPW 114
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
+D L +P + + + L + DN++T P L+ + L+L NN L+ +
Sbjct: 14 VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 459 LANFDSLSLLDLRKNQFRGSIPQ 481
L+ L L NQ + SIP+
Sbjct: 74 FDKLTQLTQLSLNDNQLK-SIPR 95
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LT 314
VP + Q VL L DNQ + P VF L++LTR+ L + T LP F+ LT
Sbjct: 30 ASVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 86
Query: 315 QLSLLELSRNQF 326
QL+ L L+ NQ
Sbjct: 87 QLTQLSLNDNQL 98
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
+T + L L +N ++ + P L+ LDL NQ +F K L L+LNDN+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 499 LE 500
L+
Sbjct: 98 LK 99
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 254 FDGQV----PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS 309
+D Q+ P L QLT L+L++NQ + VF L++LT++SL N +P
Sbjct: 46 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRG 104
Query: 310 AF-NLTQLSLLELSRNQF 326
AF NL L+ + L N +
Sbjct: 105 AFDNLKSLTHIWLLNNPW 122
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
+D L +P + + + L + DN++T P L+ + L+L NN L+ +
Sbjct: 22 VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 81
Query: 459 LANFDSLSLLDLRKNQFRGSIPQ 481
L+ L L NQ + SIP+
Sbjct: 82 FDKLTQLTQLSLNDNQLK-SIPR 103
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 248 DLYVCYFDGQ----VPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT 303
D+ Y DG VP LSN K LT+++L +N+ S F N+++L + L++
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGN--FLDGRIPSWLFN 359
P + L L LL L N + +P A LSHL +G N + D + WL +
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYCDCNM-QWLSD 149
Query: 360 LSTSE 364
SE
Sbjct: 150 WVKSE 154
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 632 FTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV 691
T IDLSNNR + + ++ L L S+N LR P L +L +L+L N +
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-I 114
Query: 692 GPIPQGKQFDSFQNDSFIGNLGLCGFALTQQC 723
+P+G +F + S + +L + L C
Sbjct: 115 SVVPEG----AFNDLSALSHLAIGANPLYCDC 142
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 454 MIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDL 513
++P+ L+N+ L+L+DL N+ Q FS L+ L L+ N L P + L
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 514 EVLDVGNNKIN 524
+L + N I+
Sbjct: 105 RLLSLHGNDIS 115
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 619 KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT 678
KG+ + + + T + L N+F ++PKE+ L L++ S+N + +++T
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 679 ALSVLNLSFNQLVGPIPQGKQFDSFQN 705
L L LS+N+L P + FD ++
Sbjct: 79 QLLTLILSYNRLRCIPP--RTFDGLKS 103
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 257 QVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQ- 315
VP LS ++ T+LN+ N S + +LSKL + ++H N L +S F Q
Sbjct: 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQE 70
Query: 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG 351
L L+LS N+ V ++ CH + + L HL L N D
Sbjct: 71 LEYLDLSHNKLV-KISCHPT-VNLKHLDLSFNAFDA 104
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 364 ENLVELDLSNNKLTGQIFQLD-QWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLS 421
++L +LD+S N ++ + D W +S L++ SN+L F L RI+ L
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLS------LNMSSNILTDTIFRCLPPRIKVLD 427
Query: 422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481
+ NK+ P + L ++ LN+++N L + SL + L N + S P+
Sbjct: 428 LHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Query: 482 I 482
I
Sbjct: 487 I 487
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 127/340 (37%), Gaps = 61/340 (17%)
Query: 364 ENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS----SRIRF 419
+ L LDLS+NKL + +V L+HLD+ N LP S+++F
Sbjct: 69 QELEYLDLSHNKLVK---------ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119
Query: 420 LSVSDNKL--TGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477
L +S L + P + N+S + L L P+ L +F++ SL
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKV-LLVLGETYGEKEDPEGLQDFNTESL--------HI 170
Query: 478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL 537
P + E L S+ +LE+ ++ ++ Y+ + L +L
Sbjct: 171 VFP--------------TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216
Query: 538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDD 597
Q SN NN+ + F +RI+ + + YF + G D
Sbjct: 217 QTNPKLSN----LTLNNIETTWNSF--IRILQLVWHT-----TVWYFSISNVKLQGQLDF 265
Query: 598 IDLDY----MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV--- 650
D DY + + Q S + + + IF+ +++ N G +
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGF-----PQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
K+S L+FS+N+L + LT L L L NQL
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 130/324 (40%), Gaps = 44/324 (13%)
Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ 277
+ L+ LDL+ T G +P + L LK L L V +FD S +N LT L + N
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 278 FSGEFP-DVFGNLSKLTRISLAH--LNFTGQLPLSAFNLTQLSLLELSRNQFVG-QLPCH 333
L L + L+H + + L NL+ L L LS N+ +G Q
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF 393
Query: 334 ASCLPLSHLKLGGNFLDGRIPSWLF-NLSTSENL----VELDLSNNKLTGQIFQLDQWPV 388
C L L L L P F NL + L LD SN L L PV
Sbjct: 394 KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHL------LAGLPV 447
Query: 389 ERISSVELRHLD----VQSNLLQRLP----FILSS---------------RIRFLSVSDN 425
R +++ H ++NLLQ + ILSS ++ + +S N
Sbjct: 448 LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHN 507
Query: 426 KLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSK 485
LT + S+ +L I YLNL+ NS++ + P+ L S ++L N + I
Sbjct: 508 SLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNI--- 563
Query: 486 CYDLVALNLNDNELEGKLPPSLAN 509
+ L N ++LEG + AN
Sbjct: 564 -HFLTWYKENLHKLEGSEETTCAN 586
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 148/390 (37%), Gaps = 87/390 (22%)
Query: 260 ASLSNLKQLTV--LNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS 317
A L L +++V LNL++++FS F ++L + L + G LP L L
Sbjct: 243 AMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLK 301
Query: 318 LLELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376
L LS N F A+ P L+HL + GN ++ + L NL LDLS+N +
Sbjct: 302 KLVLSVNHFDQLCQISAANFPSLTHLYIRGNV--KKLHLGVGCLEKLGNLQTLDLSHNDI 359
Query: 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC 436
S++L+
Sbjct: 360 EA----------SDCCSLQLK--------------------------------------- 370
Query: 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQI-FSKCYDLVALNLN 495
NLS ++ LNLS+N G+ Q L LLDL + + PQ F + L LN
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN-- 428
Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNV 555
L C LD N + A LP L+ L L+ N F
Sbjct: 429 -----------LTYC----FLDTSNQ-------HLLAGLPVLRHLNLKGNHFQDGTITKT 466
Query: 556 PSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGD--NDDIDLDYMNSAGYDQYYS 613
++ + L ++ +S G + + F SL M H D ++ + D ++S + +
Sbjct: 467 -NLLQTVGSLEVLILSSCGLLS-IDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY 524
Query: 614 MILTYKGVDLEMERVLNIF---TTIDLSNN 640
+ L +++ R+L I +TI+LS+N
Sbjct: 525 LNLAANSINIISPRLLPILSQQSTINLSHN 554
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 143/329 (43%), Gaps = 56/329 (17%)
Query: 227 ITKFSGKIPDT--IGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPD 284
+T F+ +I D + NL +L L+L ++LS L L LN NQ + P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP- 168
Query: 285 VFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKL 344
NL+ L R+ ++ N + + A LT L L + NQ P L L L
Sbjct: 169 -LANLTTLERLDISS-NKVSDISVLA-KLTNLESLIATNNQISDITPLGI-LTNLDELSL 224
Query: 345 GGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN 404
GN L + L++ NL +LDL+NN+++ + P+ ++ +L L + +N
Sbjct: 225 NGNQLKD-----IGTLASLTNLTDLDLANNQIS------NLAPLSGLT--KLTELKLGAN 271
Query: 405 LLQRL-PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFD 463
+ + P + + L +++N+L E S I NL + YL L N++S + P
Sbjct: 272 QISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS----- 324
Query: 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523
SL L++ F +K D+ SLAN ++ L G+N+I
Sbjct: 325 --SLTKLQRLFFYN------NKVSDV---------------SSLANLTNINWLSAGHNQI 361
Query: 524 NDAFPYWTATLPRLQVLVLRSNSF-HGPI 551
+D P A L R+ L L ++ + P+
Sbjct: 362 SDLTPL--ANLTRITQLGLNDQAWTNAPV 388
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 381 FQLDQWPVERISSVE----LRHLDVQSNLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSI 435
Q D+ ++ I VE L ++ +N L + P +++ + +++N++ P +
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--L 103
Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
NL+ + L L NN ++ + P L N +L+ L+L N S S L LN +
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFS 159
Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
N++ P LAN LE LD+ +NK++D A L L+ L+ +N
Sbjct: 160 SNQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQI 207
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%)
Query: 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSL 465
L +P L S I L+++ N+L P++ S + L+ NS+S + P+ L
Sbjct: 16 LTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 466 SLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521
+L+L+ N+ Q F C +L L+L N + N +L LD+ +N
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 127/539 (23%), Positives = 197/539 (36%), Gaps = 120/539 (22%)
Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLT-------RISLAHLNFTGQLPL-SAFNLTQLSLL 319
+TVLNL NQ P F S+L IS LPL NL L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 320 ELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG- 378
++S FV C L+ L L N + +I S F +NL++LDLS+N L+
Sbjct: 87 QISDQTFVF-------CTNLTELDLMSNSIH-KIKSNPF--KNQKNLIKLDLSHNGLSST 136
Query: 379 -------------------QIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSR 416
+I L +E + + LR LD+ SN L+ F +
Sbjct: 137 KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGK 196
Query: 417 IRFLSVSDNKLTGEFPSSIC---NLSTIEYLNLSNNSLSGMIPQCLA--NFDSLSLLDLR 471
+ L +++ +L +C + ++I+ L+L+NN L + + +L+ LDL
Sbjct: 197 LFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLS 256
Query: 472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDV------------G 519
N FS L L+L N ++ P S +L L +
Sbjct: 257 YNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLAS 316
Query: 520 NNKINDAFPYWTATLPRLQ-----VLVLRSNSFHGPIYNNVPSIKRPFP----------- 563
+ I+D W L L + +SN+F G + S+ + F
Sbjct: 317 HPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFV 376
Query: 564 -----------------------------ELRIIDISRNGFTGLLPARYFQSLKAMMH-- 592
+LRI+D+ N L + ++ L+ +
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIY 436
Query: 593 -GDNDDIDLDYMNSAGYDQYYSMIL---TYKGVDLEME--RVLNIFTTIDLSNNRFEGMI 646
N + L + A ++L K VD+ R L T +DLSNN +
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANIN 496
Query: 647 PKEVGKLSSLKLLNFSHNIL-----RGEI--PVE-LTSLTALSVLNLSFNQLVGPIPQG 697
+ L +L++L+F HN L R PV L L+ L +LNL N L IP G
Sbjct: 497 EDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPVG 554
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Query: 394 VELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICN-LSTIEYLNLSNN 449
+ +LD+++N L+ LP F + + L + NKL P+ + N L+++ YLNLS N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86
Query: 450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLAN 509
L + L L L NQ + +F K L L L N+L+
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 510 CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSI 558
L+ + + +N W T P ++ L N G + N+ S+
Sbjct: 147 LTSLQYIWLHDNP-------WDCTCPGIRYLSEWINKHSGVVRNSAGSV 188
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 253 YFDGQVPASLSN-----LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLP 307
Y G SL N L LT LNL NQ VF L++L ++L + N LP
Sbjct: 58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLP 116
Query: 308 LSAFN-LTQLSLLELSRNQF 326
F+ LTQL L L +NQ
Sbjct: 117 DGVFDKLTQLKDLRLYQNQL 136
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 409 LPFILSSRIRFLSVSDNKLTGEFPSSICN-LSTIEYLNLSNNSLSGMIPQCLANFDSLSL 467
+P + ++ +L + N L P+ + + L+++ L L N L + SL+
Sbjct: 22 VPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80
Query: 468 LDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500
L+L NQ + +F K L L LN N+L+
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 10/166 (6%)
Query: 396 LRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
L +L + N LQ LP F + ++ L + +N+L L+ + YLNL++N L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 453 GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512
+ +L+ LDL NQ + +F K L L L N+L+
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206
Query: 513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSI 558
L+ + + +N W T P ++ L N G + N+ S+
Sbjct: 207 LQYIWLHDNP-------WDCTCPGIRYLSEWINKHSGVVRNSAGSV 245
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 236 DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295
D + NL++L ++ + V L+NL T LNL NQ VF L+ LT +
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNL---TYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 296 SLAHLNFTGQLPLSAFN-LTQLSLLELSRNQF 326
L++ N LP F+ LTQL L L +NQ
Sbjct: 163 DLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSL 465
+Q LP +R+L++ NKL S++ L+ + YL L+ N L + +L
Sbjct: 59 IQYLP-----NVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 466 SLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523
L L +NQ + +F K +L LNL N+L+ +L LD+ N++
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 637 LSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ 696
L N+ + + KL++L LN +HN L+ LT L+ L+LS+NQL +P+
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPE 174
Query: 697 G 697
G
Sbjct: 175 G 175
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 44/200 (22%)
Query: 260 ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSL 318
++L L LT L L NQ VF L+ L + L N LP F+ LT L+
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTY 137
Query: 319 LELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378
L L+ NQ +P +F+ T NL ELDLS N+L
Sbjct: 138 LNLAHNQL------------------------QSLPKGVFDKLT--NLTELDLSYNQLQS 171
Query: 379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSVSDNKLTGEFPSSI 435
L + ++++ +L+ L + N L+ +P F + ++++ + DN
Sbjct: 172 ----LPEGVFDKLT--QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 218
Query: 436 CNLSTIEYLNLSNNSLSGMI 455
C I YL+ N SG++
Sbjct: 219 CTCPGIRYLSEWINKHSGVV 238
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474
++I L +S N L S+I L +I+ L+L++ ++ + P LA +L +L L NQ
Sbjct: 85 TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140
Query: 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL 534
P + +L L++ + ++ P LAN L L +NKI+D P A+L
Sbjct: 141 ITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPL--ASL 194
Query: 535 PRLQVLVLRSNSF 547
P L + L++N
Sbjct: 195 PNLIEVHLKNNQI 207
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LT 314
VP + Q VL L DN+ + P VF L++LTR+ L + T LP F+ LT
Sbjct: 22 ASVPTGIPTTTQ--VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 315 QLSLLELSRNQF 326
QL+ L L+ NQ
Sbjct: 79 QLTQLSLNDNQL 90
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
+T + L L +N ++ + P L+ LDL NQ +F K L L+LNDN+
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 499 LE 500
L+
Sbjct: 90 LK 91
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLS 317
P L QLT L+L++NQ + VF L++LT++SL N +P AF NL L+
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLRSLT 105
Query: 318 LLELSRNQF 326
+ L N +
Sbjct: 106 HIWLLNNPW 114
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
+D L +P + + + L + DN++T P L+ + L+L NN L+ +
Sbjct: 14 VDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73
Query: 459 LANFDSLSLLDLRKNQFRGSIPQ 481
L+ L L NQ + SIP+
Sbjct: 74 FDKLTQLTQLSLNDNQLK-SIPR 95
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 143/329 (43%), Gaps = 56/329 (17%)
Query: 227 ITKFSGKIPDT--IGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPD 284
+T F+ +I D + NL +L L+L ++LS L L L+ NQ + P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP- 168
Query: 285 VFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKL 344
NL+ L R+ ++ N + + A LT L L + NQ P L L L
Sbjct: 169 -LANLTTLERLDISS-NKVSDISVLA-KLTNLESLIATNNQISDITPLGI-LTNLDELSL 224
Query: 345 GGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN 404
GN L + L++ NL +LDL+NN+++ + P+ ++ +L L + +N
Sbjct: 225 NGNQLKD-----IGTLASLTNLTDLDLANNQIS------NLAPLSGLT--KLTELKLGAN 271
Query: 405 LLQRL-PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFD 463
+ + P + + L +++N+L E S I NL + YL L N++S + P
Sbjct: 272 QISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS----- 324
Query: 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523
SL L++ F +K D+ SLAN ++ L G+N+I
Sbjct: 325 --SLTKLQRLFFSN------NKVSDV---------------SSLANLTNINWLSAGHNQI 361
Query: 524 NDAFPYWTATLPRLQVLVLRSNSF-HGPI 551
+D P A L R+ L L ++ + P+
Sbjct: 362 SDLTPL--ANLTRITQLGLNDQAWTNAPV 388
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 381 FQLDQWPVERISSVE----LRHLDVQSNLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSI 435
Q D+ ++ I VE L ++ +N L + P +++ + +++N++ P +
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--L 103
Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
NL+ + L L NN ++ + P L N +L+ L+L N S S L L+ +
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFS 159
Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
N++ P LAN LE LD+ +NK++D A L L+ L+ +N
Sbjct: 160 SNQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQI 207
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 76/185 (41%), Gaps = 26/185 (14%)
Query: 586 SLKAMMHGDNDDIDLDYMNSAGYDQYYSMILT----------------YKGVDLEMERVL 629
++ AMMH + +D+ S +Q M+ T Y +L++ +
Sbjct: 245 AMMAMMHAEQK-VDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLE 303
Query: 630 NIFTTIDLSNNRFEGM-IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
T+ + F+ + + +E KL++++++ N+ G +P + + ++ FN
Sbjct: 304 KHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMK--ENMRTGNLPANMKKARVIQIIPYDFN 361
Query: 689 QLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYEVPPAPMPEEDDTSSSWAWFDW 748
+++ + +G+++ + N SFI + + Q P ED W W
Sbjct: 362 RVILSMKRGQEYTDYINASFIDGYRQKDYFIATQ------GPLAHTVEDFWRMIWEWKSH 415
Query: 749 KIVVM 753
IV++
Sbjct: 416 TIVML 420
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 28/259 (10%)
Query: 240 NLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ-FSGE-FPDVFGNLSKL---TR 294
NL+DL +++Y C ++P L L + ++N+ N+ SGE D + L+ +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 295 ISLAHLNF----TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350
I + ++ + T + S +L LE NQ G+LP S + L+ L L N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
Query: 351 GRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQS------N 404
IP+ +E + L ++NKL D V S+++ + ++ S +
Sbjct: 367 -EIPANFCGF--TEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFD 423
Query: 405 LLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNL-STIEYLNLSNNSLSGMIPQCLA--- 460
L PF + +++S+N+++ +FP + + S + +NL N L+ + L
Sbjct: 424 PLDPTPF-KGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDEN 481
Query: 461 -NFDSLSLL---DLRKNQF 475
NF + LL DLR N+
Sbjct: 482 ENFKNTYLLTSIDLRFNKL 500
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 137/330 (41%), Gaps = 85/330 (25%)
Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI-----------------SLAHLNFTG 304
L+NL LT L L +NQ + P NL+ L R+ SL LNF
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 305 QL----PLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN- 359
Q+ PL+ NLT L L++S N+ V + A L L N + P +
Sbjct: 161 QVTDLKPLA--NLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 360 ----------------LSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQS 403
L++ NL +LDL+NN+++ + P+ ++ +L L + +
Sbjct: 218 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS------NLAPLSGLT--KLTELKLGA 269
Query: 404 NLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANF 462
N + + P + + L +++N+L E S I NL + YL L N++S + P
Sbjct: 270 NQISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS---- 323
Query: 463 DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNK 522
SL L++ F +K D+ SLAN ++ L G+N+
Sbjct: 324 ---SLTKLQRLFFSN------NKVSDV---------------SSLANLTNINWLSAGHNQ 359
Query: 523 INDAFPYWTATLPRLQVLVLRSNSF-HGPI 551
I+D P A L R+ L L ++ + P+
Sbjct: 360 ISDLTPL--ANLTRITQLGLNDQAWTNAPV 387
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 381 FQLDQWPVERISSVE----LRHLDVQSNLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSI 435
Q D+ ++ I VE L ++ +N L + P +++ + +++N++ P +
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--L 103
Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
NL+ + L L NN ++ + P L N +L+ L+L N S S L LN
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFG 159
Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
N++ P LAN LE LD+ +NK++D A L L+ L+ +N
Sbjct: 160 -NQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQI 206
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 135/351 (38%), Gaps = 54/351 (15%)
Query: 208 TGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQ 267
TG P S+ R + +F +P+ I + + LDL ++
Sbjct: 1 TGCPPRCECSAQDRAVLCHRKRFVA-VPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPH 57
Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQF 326
L L L +N S P F NL L + L N +PL F L+ L+ L++S N+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 327 VGQLPCHASCL-PLSHLKLGGN---FLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ 382
V L L L L++G N ++ R S L +L +LT +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE-------------QLTLEKCN 163
Query: 383 LDQWPVERISSVE------LRHLDVQSNLLQRLPFILSSRIRFLSVSD---------NKL 427
L P E +S + LRHL++ N ++ F R++ L +S N L
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221
Query: 428 TGEFPSSI----CNLSTIEYL-----------NLSNNSLSGMIPQCLANFDSLSLLDLRK 472
G +S+ CNL+ + YL NLS N +S + L L + L
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Query: 473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523
Q P F L LN++ N+L + G+LE L + +N +
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 143/329 (43%), Gaps = 56/329 (17%)
Query: 227 ITKFSGKIPDT--IGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPD 284
+T F+ +I D + NL +L L+L ++LS L L L+ NQ + P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP- 168
Query: 285 VFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKL 344
NL+ L R+ ++ N + + A LT L L + NQ P L L L
Sbjct: 169 -LANLTTLERLDISS-NKVSDISVLA-KLTNLESLIATNNQISDITPLGI-LTNLDELSL 224
Query: 345 GGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN 404
GN L + L++ NL +LDL+NN+++ + P+ ++ +L L + +N
Sbjct: 225 NGNQLKD-----IGTLASLTNLTDLDLANNQIS------NLAPLSGLT--KLTELKLGAN 271
Query: 405 LLQRL-PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFD 463
+ + P + + L +++N+L E S I NL + YL L N++S + P
Sbjct: 272 QISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS----- 324
Query: 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523
SL L++ F +K D+ SLAN ++ L G+N+I
Sbjct: 325 --SLTKLQRLFFYN------NKVSDV---------------SSLANLTNINWLSAGHNQI 361
Query: 524 NDAFPYWTATLPRLQVLVLRSNSF-HGPI 551
+D P A L R+ L L ++ + P+
Sbjct: 362 SDLTPL--ANLTRITQLGLNDQAWTNAPV 388
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 381 FQLDQWPVERISSVE----LRHLDVQSNLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSI 435
Q D+ ++ I VE L ++ +N L + P +++ + +++N++ P +
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--L 103
Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
NL+ + L L NN ++ + P L N +L+ L+L N S S L L+ +
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFS 159
Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
N++ P LAN LE LD+ +NK++D A L L+ L+ +N
Sbjct: 160 SNQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQI 207
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 99/237 (41%), Gaps = 40/237 (16%)
Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSL 318
P N+ LTVL LE N S +F N KLT +S+++ N + T L
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 319 LELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDG-RIPSWLFNLSTSEN----------- 365
L+LS N+ S +P L H + N L IP + L S N
Sbjct: 170 LQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226
Query: 366 -LVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL---PFILSSRIRFLS 421
L L L +N LT + L+ +P L +D+ N L+++ PF+ R+ L
Sbjct: 227 ELTILKLQHNNLTDTAWLLN-YP-------GLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 422 VSDNKLTGEFPSSICNL-----STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
+S+N+L NL T++ L+LS+N L + + FD L L L N
Sbjct: 279 ISNNRLVA------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 328
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 112/296 (37%), Gaps = 42/296 (14%)
Query: 425 NKLTGEFPSSICN-LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIF 483
N + P+++ + +E LNL++ + + A ++ L + N R P +F
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113
Query: 484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN---KINDAFPYWTATLPRLQV- 539
L L L N+L N L L + NN +I D T +L LQ+
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 540 --------LVLRSNSFHGPI-YNNVPSIKRPFPELRIIDISRNGFTGLL-PARYFQSLKA 589
L L + FH + YN + ++ P + +D S N + P ++
Sbjct: 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA-VEELDASHNSINVVRGPVNVELTILK 232
Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKE 649
+ H + D + +L Y G+ +DLS N E ++
Sbjct: 233 LQHNNLTDT--------------AWLLNYPGL-----------VEVDLSYNELEKIMYHP 267
Query: 650 VGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
K+ L+ L S+N L + + + L VL+LS N L+ QFD +N
Sbjct: 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASL-SNLKQLTVLNLEDNQF 278
L + D ITK + D++ NL++L + G +P + +L QLTVL+L NQ
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL----GALPVGVFDSLTQLTVLDLGTNQL 100
Query: 279 SGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQF 326
+ VF L L + + N +LP LT L+ L L +NQ
Sbjct: 101 TVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQC 458
+D +S +P + + + L + DN++T P +L ++ L L +N L +
Sbjct: 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83
Query: 459 LANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDV 518
+ L++LDL NQ +F + L L + N+L +LP + L L +
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 519 GNNKIN 524
N++
Sbjct: 143 DQNQLK 148
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 46/172 (26%)
Query: 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI 479
L ++ N LT E P+ I NLS + L+LS+N L+ S+
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-------------------------SL 285
Query: 480 PQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539
P C+ L DN + LP N +L+ L V N + F +
Sbjct: 286 PAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQF-----------L 333
Query: 540 LVLRSNSFHGPIY---NNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLK 588
+L S G I+ +N P I P E R I+I+ +G P R + SL+
Sbjct: 334 KILTEKSVTGLIFYLRDNRPEIPLPH-ERRFIEINTDG----EPQREYDSLQ 380
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 646 IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
+P E+ LS+L++L+ SHN L +P EL S L F+ +V +P +F + N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPW--EFGNLCN 317
Query: 706 DSFIGNLG 713
F+G G
Sbjct: 318 LQFLGVEG 325
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNL 313
+D Q+ +L +L L + N+ N F +F LTR+ L + T +LP NL
Sbjct: 221 YDDQLWHAL-DLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNL 269
Query: 314 TQLSLLELSRNQFVGQLPCH-ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
+ L +L+LS N+ LP SC L + F D + + + NL L +
Sbjct: 270 SNLRVLDLSHNRLTS-LPAELGSCFQLKYFY----FFDNMVTTLPWEFGNLCNLQFLGVE 324
Query: 373 NNKLTGQIFQL 383
N L Q ++
Sbjct: 325 GNPLEKQFLKI 335
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 357 LFNLSTS----ENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFI 412
+FN+S + + L L L+ N LT + P E + LR LD+ N L LP
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLT-------ELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 413 LSS--RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLL-D 469
L S ++++ DN +T P NL +++L + N L + L L+
Sbjct: 289 LGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347
Query: 470 LRKNQFRGSIP 480
LR N R IP
Sbjct: 348 LRDN--RPEIP 356
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSL 465
L+++P L L + +NK+T NL + L L NN +S + P A L
Sbjct: 43 LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 466 SLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND 525
L L KNQ + +P+ K L L +++NE+ + V+++G N +
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 526 A 526
+
Sbjct: 160 S 160
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG 328
+L+L++N+ + F NL L + L + + P + L +L L LS+NQ
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K 113
Query: 329 QLPCHASCLP--LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW 386
+LP +P L L++ N + ++ +FN +VEL + K +G ++
Sbjct: 114 ELP---EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG----IENG 165
Query: 387 PVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNL 446
+ + +L ++ + + +P L + L + NK+T +S+ L+ + L L
Sbjct: 166 AFQGMK--KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 447 SNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
S NS+S + LAN L L L N+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSL 465
L+++P L L + +NK+T NL + L L NN +S + P A L
Sbjct: 43 LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 466 SLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND 525
L L KNQ + +P+ K L L +++NE+ + V+++G N +
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 526 A 526
+
Sbjct: 160 S 160
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG 328
+L+L++N+ + F NL L + L + + P + L +L L LS+NQ
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K 113
Query: 329 QLPCHASCLP--LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW 386
+LP +P L L++ N + ++ +FN +VEL + K +G ++
Sbjct: 114 ELP---EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG----IENG 165
Query: 387 PVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNL 446
+ + +L ++ + + +P L + L + NK+T +S+ L+ + L L
Sbjct: 166 AFQGMK--KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 447 SNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
S NS+S + LAN L L L N+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 137/330 (41%), Gaps = 85/330 (25%)
Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI-----------------SLAHLNFTG 304
L+NL LT L L +NQ + P NL+ L R+ SL LNF
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 305 QL----PLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN- 359
Q+ PL+ NLT L L++S N+ V + A L L N + P +
Sbjct: 161 QVTDLKPLA--NLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 360 ----------------LSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQS 403
L++ NL +LDL+NN+++ + P+ ++ +L L + +
Sbjct: 218 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS------NLAPLSGLT--KLTELKLGA 269
Query: 404 NLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANF 462
N + + P + + L +++N+L E S I NL + YL L N++S + P
Sbjct: 270 NQISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS---- 323
Query: 463 DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNK 522
SL L++ F +K D+ SLAN ++ L G+N+
Sbjct: 324 ---SLTKLQRLFFYN------NKVSDV---------------SSLANLTNINWLSAGHNQ 359
Query: 523 INDAFPYWTATLPRLQVLVLRSNSF-HGPI 551
I+D P A L R+ L L ++ + P+
Sbjct: 360 ISDLTPL--ANLTRITQLGLNDQAWTNAPV 387
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 381 FQLDQWPVERISSVE----LRHLDVQSNLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSI 435
Q D+ ++ I VE L ++ +N L + P +++ + +++N++ P +
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--L 103
Query: 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495
NL+ + L L NN ++ + P L N +L+ L+L N S S L LN
Sbjct: 104 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFG 159
Query: 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
N++ P LAN LE LD+ +NK++D A L L+ L+ +N
Sbjct: 160 -NQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQI 206
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 19/190 (10%)
Query: 396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI 455
+R LD+ + L++L + + LS SD + + + NL ++YLNLS N G+
Sbjct: 335 MRKLDLGTRCLEKLENL---QKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLE 391
Query: 456 PQCLANFDSLSLLDLRKNQFRGSIPQI-FSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514
Q L LLD+ P F + L LNL+ L+ LA DL
Sbjct: 392 DQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLR 451
Query: 515 VLDVGNNKINDAFPYWTATLP---RLQVLVLRSNSFHGPIYNNVPSI-KRPFPELRII-- 568
L++ N D T L L++L+L S N+ SI ++ F LR +
Sbjct: 452 HLNLQGNSFQDGSISKTNLLQMVGSLEILILSS--------CNLLSIDQQAFHGLRNVNH 503
Query: 569 -DISRNGFTG 577
D+S N TG
Sbjct: 504 LDLSHNSLTG 513
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQLSLLE 320
L NL+ L LNL N+ G F +L + +A + + P S F NL L +L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 321 LSR------NQFVGQLPCHASCLPLSHLKLGGN-FLDGRIPSWLFNLSTSENLVELDLSN 373
LS NQ + A L HL L GN F DG I + NL+++
Sbjct: 431 LSHCLLDTSNQHLL-----AGLQDLRHLNLQGNSFQDGSI--------SKTNLLQM---- 473
Query: 374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433
+ + +SS L +D Q+ F + L +S N LTG+
Sbjct: 474 ---------VGSLEILILSSCNLLSIDQQA-------FHGLRNVNHLDLSHNSLTGDSMD 517
Query: 434 SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473
++ +L + YLN+++N++ + P L S+++L N
Sbjct: 518 ALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 220 LRILDLSITKFSGKIPDT-IGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQF 278
L +LD++ T K P + NL L+ L+L C D L+ L+ L LNL+ N F
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 279 SGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLP 338
G++SK + + G L + L+ +LL + + F G + + L
Sbjct: 461 QD------GSISKTNLLQMV-----GSLEI--LILSSCNLLSIDQQAFHGLR--NVNHLD 505
Query: 339 LSHLKLGGNFLDG 351
LSH L G+ +D
Sbjct: 506 LSHNSLTGDSMDA 518
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 145/341 (42%), Gaps = 38/341 (11%)
Query: 370 DLSNNKLTGQIFQ-LDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLT 428
D + LT F+ L VE I+ + R D+ S+ F +R++ L ++ L
Sbjct: 236 DTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSS-----TFRCFTRVQELDLTAAHLN 290
Query: 429 GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSI-PQIFSKCY 487
G PS I +++++ L L+ NS + A+F SL L ++ N + + + K
Sbjct: 291 G-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLE 349
Query: 488 DLVALNLNDNELEGK--LPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
+L L+L+ +++E L N L+ L++ N+ P+L++L +
Sbjct: 350 NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFT 409
Query: 546 SFHGPIYNNVPSIKRPFPE---LRIIDIS--------RNGFTGLLPARYFQSLKAMMHGD 594
H V + PF LR++++S ++ GL R+ +L+ D
Sbjct: 410 HLH------VKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL-NLQGNSFQD 462
Query: 595 NDDIDLDYMNSAGYDQYYSMILT---YKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG 651
+ + G + +IL+ +D + L +DLS+N G +
Sbjct: 463 GSISKTNLLQMVGSLEI--LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG---DSMD 517
Query: 652 KLSSLK--LLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690
LS LK LN + N +R P L +L+ S++NLS N L
Sbjct: 518 ALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS--ICNLSTIEYLNLSNNSLSGMIP 456
+D L+ +P + L ++DN+L G S L + L L N L+G+ P
Sbjct: 13 VDCTGRGLKEIPRDIPLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
Query: 457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVL 516
+ L L +N+ + ++F + L LNL DN++ +P S + L L
Sbjct: 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131
Query: 517 DVGNNKIN-DAFPYWTATLPRLQVL 540
++ +N N + W A R + L
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSL 156
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 179 NCFLRG--EFPIDI-FHFPFLRQLTLSDNGL-------LTGNLPTSNWSSPLRILDLSIT 228
+C RG E P DI H +L L+DN L L G LP L L+L
Sbjct: 14 DCTGRGLKEIPRDIPLH---TTELLLNDNELGRISSDGLFGRLPH------LVKLELKRN 64
Query: 229 KFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGN 288
+ +G P+ ++ L L L QL LNL DNQ S P F +
Sbjct: 65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124
Query: 289 LSKLTRISLAHLNFTGQLPLSAF 311
L+ LT ++LA F L+ F
Sbjct: 125 LNSLTSLNLASNPFNCNCHLAWF 147
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG 501
E +S++ L G +P L L+L++NQ G P F + L L +N+++
Sbjct: 40 ELGRISSDGLFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 502 KLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
L+ L++ +N+I+ P L L L L SN F
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 84/203 (41%), Gaps = 42/203 (20%)
Query: 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327
L L++ DNQ + P + L KL A+ N LP+ L +LS+ S NQ
Sbjct: 143 LQELSVSDNQLAS-LPALPSELCKL----WAYNNQLTSLPMLPSGLQELSV---SDNQL- 193
Query: 328 GQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN------LSTSENLVELDLSNNKLTGQIF 381
LP LP KL W +N + L EL +S N+LT
Sbjct: 194 ASLPT----LPSELYKL-----------WAYNNRLTSLPALPSGLKELIVSGNRLTS--- 235
Query: 382 QLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTI 441
PV EL+ L V N L LP +L S + LSV N+LT P S+ +LS+
Sbjct: 236 ----LPV---LPSELKELMVSGNRLTSLP-MLPSGLLSLSVYRNQLT-RLPESLIHLSSE 286
Query: 442 EYLNLSNNSLSGMIPQCLANFDS 464
+NL N LS Q L S
Sbjct: 287 TTVNLEGNPLSERTLQALREITS 309
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 39/215 (18%)
Query: 259 PASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSL 318
P N+ LTVL LE N S +F N KLT +S+++ N + T L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175
Query: 319 LELSRNQFVGQLPCHASCLP-LSHLKLGGNFLDG-RIPSWLFNLSTSEN----------- 365
L+LS N+ S +P L H + N L IP + L S N
Sbjct: 176 LQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232
Query: 366 -LVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL---PFILSSRIRFLS 421
L L L +N LT + L+ +P L +D+ N L+++ PF+ R+ L
Sbjct: 233 ELTILKLQHNNLTDTAWLLN-YP-------GLVEVDLSYNELEKIMYHPFVKMQRLERLY 284
Query: 422 VSDNKLTGEFPSSICNL-----STIEYLNLSNNSL 451
+S+N+L NL T++ L+LS+N L
Sbjct: 285 ISNNRLVA------LNLYGQPIPTLKVLDLSHNHL 313
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 114/297 (38%), Gaps = 44/297 (14%)
Query: 425 NKLTGEFPSSICN-LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIF 483
N + P+++ + +E LNL++ + + A ++ L + N R P +F
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119
Query: 484 SKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNN---KINDAFPYWTATLPRLQV 539
L L L N+L LP + N L L + NN +I D T +L LQ+
Sbjct: 120 QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 540 ---------LVLRSNSFHGPI-YNNVPSIKRPFPELRIIDISRNGFTGLL-PARYFQSLK 588
L L + FH + YN + ++ P + +D S N + P ++
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA-VEELDASHNSINVVRGPVNVELTIL 237
Query: 589 AMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPK 648
+ H + D + +L Y G +DLS N E ++
Sbjct: 238 KLQHNNLTDT--------------AWLLNYPG-----------LVEVDLSYNELEKIMYH 272
Query: 649 EVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
K+ L+ L S+N L + + + L VL+LS N L+ QFD +N
Sbjct: 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 328
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELS 322
L QLT L+L NQ VF L+KLT + L H N LP F+ LTQL L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLPNGVFDKLTQLKELALD 108
Query: 323 RNQF 326
NQ
Sbjct: 109 TNQL 112
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 269 TVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQF 326
T L LE N+ VF L++LT++SL+ N LP F+ LT+L++L L N+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKL 88
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNL--LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + L LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNL--LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + L LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNL--LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + L LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNL--LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + L LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNLLQ--RLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + Q LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497
L + L+LS+N L + P +L++LD+ N+ +L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 498 ELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
EL+ P L LE L + NN++ + L L L+L+ NS +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNLLQ--RLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + Q LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 145/332 (43%), Gaps = 63/332 (18%)
Query: 227 ITKFSGKIPDT--IGNLRDLKFLDLYVCYF-DGQVPASLSNLKQLTVLNLEDNQFSGEFP 283
+T F+ +I D + NL +L L+L D + L++L+QL+ F +
Sbjct: 116 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS--------FGNQVT 167
Query: 284 DV--FGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSH 341
D+ NL+ L R+ ++ N + + A LT L L + NQ P L
Sbjct: 168 DLKPLANLTTLERLDISS-NKVSDISVLA-KLTNLESLIATNNQISDITPLGI-LTNLDE 224
Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDV 401
L L GN L + L++ NL +LDL+NN+++ + P+ ++ +L L +
Sbjct: 225 LSLNGNQLKD-----IGTLASLTNLTDLDLANNQIS------NLAPLSGLT--KLTELKL 271
Query: 402 QSNLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLA 460
+N + + P + + L +++N+L E S I NL + YL L N++S + P
Sbjct: 272 GANQISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS-- 327
Query: 461 NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN 520
SL L++ F +K D+ SLAN ++ L G+
Sbjct: 328 -----SLTKLQRLFFAN------NKVSDV---------------SSLANLTNINWLSAGH 361
Query: 521 NKINDAFPYWTATLPRLQVLVLRSNSF-HGPI 551
N+I+D P A L R+ L L ++ + P+
Sbjct: 362 NQISDLTPL--ANLTRITQLGLNDQAWTNAPV 391
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNLLQ--RLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + Q LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497
L + L+LS+N L + P +L++LD+ N+ +L L L N
Sbjct: 76 LPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 498 ELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
EL+ P L LE L + NN++ + L L L+L+ NS +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNL--LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + L LP L L +S+N L +++ + + L
Sbjct: 3 PICEVSKVA-SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 61
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 62 NLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 118
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N+
Sbjct: 119 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 710 GN 711
GN
Sbjct: 134 GN 135
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNL--LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + L LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 42/216 (19%)
Query: 313 LTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372
LT L L L+ NQ P ++ + L++L +G N + S L NL+ NL EL L+
Sbjct: 65 LTNLEYLNLNGNQITDISPL-SNLVKLTNLYIGTNKITDI--SALQNLT---NLRELYLN 118
Query: 373 NNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432
+ ++ D P+ ++ +L NL P + + +L+V+++K+ P
Sbjct: 119 EDNIS------DISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP 172
Query: 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL 492
I NL+ + L+L+ N + + P LA+ SL NQ P
Sbjct: 173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP------------ 216
Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFP 528
+AN L L +GNNKI D P
Sbjct: 217 --------------VANXTRLNSLKIGNNKITDLSP 238
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 262 LSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF 311
L+NL QL L L +NQ E +V G L+ LT + L+ + T PL++
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASL 332
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Query: 387 PVERISSVELRHLDVQSNLLQ--RLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYL 444
P+ +S V HL+V + Q LP L L +S+N L +++ + + L
Sbjct: 2 PICEVSKVA-SHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
NL L+ + Q L LDL NQ + S+P + L L+++ N L
Sbjct: 61 NLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
+L G+L+ L + N++ P P+L+ L L +N
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG-PIPQGKQFDSFQNDSFI 709
G L L L+ SHN L+ +P+ +L AL+VL++SFN+L P+ + Q
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 710 GN 711
GN
Sbjct: 133 GN 134
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 141/357 (39%), Gaps = 71/357 (19%)
Query: 396 LRHLDVQSNLLQRL---PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
L L + SN +Q++ PF+ + L +S N L+ + L ++ L LSNN +
Sbjct: 109 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 168
Query: 453 GMIPQCLANF--DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE----LEGKLPPS 506
+ + L F SL L+L NQ + P F L L LN+ + L KL
Sbjct: 169 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 228
Query: 507 LANCG-------------------------DLEVLDVGNNKI----NDAFPYWTATLPRL 537
LAN +L +LD+ N + ND+F + LP+L
Sbjct: 229 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW----LPQL 284
Query: 538 QVLVLR--------SNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589
+ L S+S HG ++KR F + I S FQ LK
Sbjct: 285 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF----SFQWLKC 340
Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTI-DLSNNRFEGMIPK 648
+ H + +D D+ + S + ++L+ + N FT++ L+N F +
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTGL---------INLKYLSLSNSFTSLRTLTNETFVSLAH- 390
Query: 649 EVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
S L +LN + N + + L L VL+L N+ +G G+++ +N
Sbjct: 391 -----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE-IGQELTGQEWRGLEN 441
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
+ I LNL++N L + + L+ LD+ N P++ K L LNL NE
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 499 LEGKLPPSLANCGDLEVLDVGNNKI 523
L + A C +L L + +N I
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSI 119
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 488 DLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
++ LNL N+L + L LDVG N I+ P LP L+VL L+ N
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 112/272 (41%), Gaps = 38/272 (13%)
Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRN 324
LK L LN+EDN G ++F L L +SL++ +FT SL L+
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN-SFT-------------SLRTLTNE 383
Query: 325 QFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD 384
FV L L+ K+ ++ SWL +L LDL N++ GQ
Sbjct: 384 TFVSLAHSPLHILNLTKNKISK--IESDAFSWLGHLEV------LDLGLNEI-GQELTGQ 434
Query: 385 QWP-VERISSVEL---RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST 440
+W +E I + L ++L + N +P + +R +++ + PS L
Sbjct: 435 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN---VDSSPSPFQPLRN 491
Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR--------GSIPQIFSKCYDLVAL 492
+ L+LSNN+++ + L + L +LDL+ N G L L
Sbjct: 492 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 551
Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524
NL N + + +L+++D+G N +N
Sbjct: 552 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 583
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 141/357 (39%), Gaps = 71/357 (19%)
Query: 396 LRHLDVQSNLLQRL---PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
L L + SN +Q++ PF+ + L +S N L+ + L ++ L LSNN +
Sbjct: 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Query: 453 GMIPQCLANF--DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE----LEGKLPPS 506
+ + L F SL L+L NQ + P F L L LN+ + L KL
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218
Query: 507 LANCG-------------------------DLEVLDVGNNKI----NDAFPYWTATLPRL 537
LAN +L +LD+ N + ND+F + LP+L
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW----LPQL 274
Query: 538 QVLVLR--------SNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589
+ L S+S HG ++KR F + I S FQ LK
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF----SFQWLKC 330
Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTI-DLSNNRFEGMIPK 648
+ H + +D D+ + S + ++L+ + N FT++ L+N F +
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGL---------INLKYLSLSNSFTSLRTLTNETFVSLAH- 380
Query: 649 EVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
S L +LN + N + + L L VL+L N+ +G G+++ +N
Sbjct: 381 -----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE-IGQELTGQEWRGLEN 431
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
+ I LNL++N L + + L+ LD+ N P++ K L LNL NE
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 499 LEGKLPPSLANCGDLEVLDVGNNKI 523
L + A C +L L + +N I
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 488 DLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
++ LNL N+L + L LDVG N I+ P LP L+VL L+ N
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 112/272 (41%), Gaps = 38/272 (13%)
Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRN 324
LK L LN+EDN G ++F L L +SL++ +FT SL L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN-SFT-------------SLRTLTNE 373
Query: 325 QFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD 384
FV L L+ K+ ++ SWL +L LDL N++ GQ
Sbjct: 374 TFVSLAHSPLHILNLTKNKISK--IESDAFSWLGHLEV------LDLGLNEI-GQELTGQ 424
Query: 385 QWP-VERISSVEL---RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST 440
+W +E I + L ++L + N +P + +R +++ + PS L
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN---VDSSPSPFQPLRN 481
Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR--------GSIPQIFSKCYDLVAL 492
+ L+LSNN+++ + L + L +LDL+ N G L L
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541
Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524
NL N + + +L+++D+G N +N
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 125/547 (22%), Positives = 208/547 (38%), Gaps = 119/547 (21%)
Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ 277
S + +DLS + N +L++LDL C + + L L+ L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 278 FSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQF-VGQLPCHASC 336
P F L+ L + T+L+ LE F +GQL
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVE--------------TKLASLE----SFPIGQL------ 127
Query: 337 LPLSHLKLGGNFLDG-RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW--------- 386
+ L L + NF+ ++P++ NL+ NLV +DLS N + Q+
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLT---NLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184
Query: 387 -------PVERISS-----VELRHLDVQSNL---------LQRLPFILSSRIRFLSVSDN 425
P++ I ++L L ++ N LQ L + R+ D
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244
Query: 426 KLTGEFPSSI----CNLSTIEYLNLSNNSLSGMIPQ--CLANFDSLSLLDLRKNQFRGSI 479
+ F SI C+++ E+ N S I + CLAN ++SL + ++ +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDV 303
Query: 480 PQIFS-KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQ 538
P+ F + ++ L K P+L + L+ L + NK + + LP L
Sbjct: 304 PKHFKWQSLSIIRCQL-------KQFPTL-DLPFLKSLTLTMNK--GSISFKKVALPSLS 353
Query: 539 VLVLRSN--SFHGPI-YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDN 595
L L N SF G Y+++ + LR +D+S NG ++ + F L+ + H D
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGT-----NSLRHLDLSFNG--AIIMSANFMGLEELQHLDF 406
Query: 596 DD--------------------IDLDYMNSA-GYDQYYSMI-----LTYKGVDLEMERVL 629
+D+ Y N+ +D + + L G + +
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
Query: 630 NIF------TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVL 683
N+F T +DLS + E + L L+LLN SHN L L +LS L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526
Query: 684 NLSFNQL 690
+ SFN++
Sbjct: 527 DCSFNRI 533
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 145/332 (43%), Gaps = 63/332 (18%)
Query: 227 ITKFSGKIPDT--IGNLRDLKFLDLYVCYF-DGQVPASLSNLKQLTVLNLEDNQFSGEFP 283
+T F+ +I D + NL +L L+L D + L++L+QL+ F +
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS--------FGNQVT 168
Query: 284 DV--FGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSH 341
D+ NL+ L R+ ++ N + + A LT L L + NQ P L
Sbjct: 169 DLKPLANLTTLERLDISS-NKVSDISVLA-KLTNLESLIATNNQISDITPLGI-LTNLDE 225
Query: 342 LKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDV 401
L L GN L + L++ NL +LDL+NN+++ + P+ ++ +L L +
Sbjct: 226 LSLNGNQLKD-----IGTLASLTNLTDLDLANNQIS------NLAPLSGLT--KLTELKL 272
Query: 402 QSNLLQRL-PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLA 460
+N + + P + + L +++N+L E S I NL + YL L N++S + P
Sbjct: 273 GANQISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS-- 328
Query: 461 NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN 520
SL L++ F +K D+ SLAN ++ L G+
Sbjct: 329 -----SLTKLQRLFFYN------NKVSDV---------------SSLANLTNINWLSAGH 362
Query: 521 NKINDAFPYWTATLPRLQVLVLRSNSF-HGPI 551
N+I+D P A L R+ L L ++ + P+
Sbjct: 363 NQISDLTPL--ANLTRITQLGLNDQAWTNAPV 392
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 141/357 (39%), Gaps = 71/357 (19%)
Query: 396 LRHLDVQSNLLQRL---PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS 452
L L + SN +Q++ PF+ + L +S N L+ + L ++ L LSNN +
Sbjct: 104 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 163
Query: 453 GMIPQCLANF--DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE----LEGKLPPS 506
+ + L F SL L+L NQ + P F L L LN+ + L KL
Sbjct: 164 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 223
Query: 507 LANCG-------------------------DLEVLDVGNNKI----NDAFPYWTATLPRL 537
LAN +L +LD+ N + ND+F + LP+L
Sbjct: 224 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW----LPQL 279
Query: 538 QVLVLR--------SNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589
+ L S+S HG ++KR F + I S FQ LK
Sbjct: 280 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF----SFQWLKC 335
Query: 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTI-DLSNNRFEGMIPK 648
+ H + +D D+ + S + ++L+ + N FT++ L+N F +
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTGL---------INLKYLSLSNSFTSLRTLTNETFVSLAH- 385
Query: 649 EVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQN 705
S L +LN + N + + L L VL+L N+ +G G+++ +N
Sbjct: 386 -----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE-IGQELTGQEWRGLEN 436
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
+ I LNL++N L + + L+ LD+ N P++ K L LNL NE
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 499 LEGKLPPSLANCGDLEVLDVGNNKI 523
L + A C +L L + +N I
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSI 114
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 488 DLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545
++ LNL N+L + L LDVG N I+ P LP L+VL L+ N
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 112/272 (41%), Gaps = 38/272 (13%)
Query: 265 LKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRN 324
LK L LN+EDN G ++F L L +SL++ +FT SL L+
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN-SFT-------------SLRTLTNE 378
Query: 325 QFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLD 384
FV L L+ K+ ++ SWL +L LDL N++ GQ
Sbjct: 379 TFVSLAHSPLHILNLTKNKISK--IESDAFSWLGHLEV------LDLGLNEI-GQELTGQ 429
Query: 385 QWP-VERISSVEL---RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST 440
+W +E I + L ++L + N +P + +R +++ + PS L
Sbjct: 430 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN---VDSSPSPFQPLRN 486
Query: 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR--------GSIPQIFSKCYDLVAL 492
+ L+LSNN+++ + L + L +LDL+ N G L L
Sbjct: 487 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 546
Query: 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524
NL N + + +L+++D+G N +N
Sbjct: 547 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 578
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 125/547 (22%), Positives = 208/547 (38%), Gaps = 119/547 (21%)
Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ 277
S + +DLS + N +L++LDL C + + L L+ L L N
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 86
Query: 278 FSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQF-VGQLPCHASC 336
P F L+ L + T+L+ LE F +GQL
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVE--------------TKLASLE----SFPIGQL------ 122
Query: 337 LPLSHLKLGGNFLDG-RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW--------- 386
+ L L + NF+ ++P++ NL+ NLV +DLS N + Q+
Sbjct: 123 ITLKKLNVAHNFIHSCKLPAYFSNLT---NLVHVDLSYNYIQTITVNDLQFLRENPQVNL 179
Query: 387 -------PVERISS-----VELRHLDVQSNL---------LQRLPFILSSRIRFLSVSDN 425
P++ I ++L L ++ N LQ L + R+ D
Sbjct: 180 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 239
Query: 426 KLTGEFPSSI----CNLSTIEYLNLSNNSLSGMIPQ--CLANFDSLSLLDLRKNQFRGSI 479
+ F SI C+++ E+ N S I + CLAN ++SL + ++ +
Sbjct: 240 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDV 298
Query: 480 PQIFS-KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQ 538
P+ F + ++ L K P+L + L+ L + NK + + LP L
Sbjct: 299 PKHFKWQSLSIIRCQL-------KQFPTL-DLPFLKSLTLTMNK--GSISFKKVALPSLS 348
Query: 539 VLVLRSN--SFHGPI-YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDN 595
L L N SF G Y+++ + LR +D+S NG ++ + F L+ + H D
Sbjct: 349 YLDLSRNALSFSGCCSYSDLGT-----NSLRHLDLSFNG--AIIMSANFMGLEELQHLDF 401
Query: 596 DD--------------------IDLDYMNSA-GYDQYYSMI-----LTYKGVDLEMERVL 629
+D+ Y N+ +D + + L G + +
Sbjct: 402 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 461
Query: 630 NIF------TTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVL 683
N+F T +DLS + E + L L+LLN SHN L L +LS L
Sbjct: 462 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 521
Query: 684 NLSFNQL 690
+ SFN++
Sbjct: 522 DCSFNRI 528
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
L+L+ N L LPP+LA LEVL +N + + A LPRLQ L+L +N
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ 521
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548
L+L+ N L LPP+LA LEVL +N + + A LPRLQ L+L +N
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ 521
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 20/104 (19%)
Query: 396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTG--EFPSSICNLSTIEYLNLSNNSLSG 453
L+HLDV +N L LP L + + +++ +N+LT E P+S +E L++ NN L+
Sbjct: 122 LKHLDVDNNQLTXLPE-LPALLEYINADNNQLTXLPELPTS------LEVLSVRNNQLTF 174
Query: 454 M--IPQCLANFD-------SLSLLDLRKNQFRGSIPQIFSKCYD 488
+ +P+ L D SL + +R + + +IF +C +
Sbjct: 175 LPELPESLEALDVSTNLLESLPAVPVRNHHSEET--EIFFRCRE 216
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 13 VTYPKTKSWNKDGDCCSWDGI----------ICDEMTGHVIGLDLSSSWLLGTLHPNSTX 62
++ K +S N+ C +GI I +T V LDLS++ + T NS
Sbjct: 15 ISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRI--TYISNSDL 72
Query: 63 XXXXXXXXXXXACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL 122
N N + S F L HL+LS++Y S + S LS L L+L
Sbjct: 73 QRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Query: 123 SSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVV 160
+ +T E F+ +LT+L+ L + N+ F+ +
Sbjct: 132 LGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKI 165
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514
IP L +++ LDL N+ +C +L AL L N + S ++ G LE
Sbjct: 46 IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRI------I 568
LD+ N +++ W L L L L N + ++ S LR+
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163
Query: 569 DISRNGFTGL 578
I R F GL
Sbjct: 164 KIQRKDFAGL 173
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 177/467 (37%), Gaps = 71/467 (15%)
Query: 87 FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL 146
F L HL+LS ++ S + S LS L L+L + ++ +L NLT L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN----PYQTLGVTSLFPNLTNL 125
Query: 147 RYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFL---------------------RGE 185
+ L + NV+ FS +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 186 FPIDIFH--FPFLRQLTLSDNGLLT---GNLPTSNWSSPLRILDLSITKFSG-------K 233
F ++IF +R L L D L LP SSP++ L + + K
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 234 IPDTIGNLRDLKFLDLYVCYFDG---------QVPASLSNLKQLTVLNLEDNQFS--GEF 282
+ I L +++F D C +G V + L ++ +T+ L QF +
Sbjct: 246 LLRYILELSEVEFDD---CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 283 PDVFGNLSKLTRISLAHLNFTGQLPLS-AFNLTQLSLLELSRN----QFVGQLPCHASCL 337
V+ L K+ RI++ + + +P S + +L L L+LS N +++ C +
Sbjct: 303 STVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361
Query: 338 PLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELR 397
L L L N L + L T +NL LD+S N + QWP ++R
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEI-LLTLKNLTSLDISRNTF-HPMPDSCQWP------EKMR 413
Query: 398 HLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ 457
L++ S ++ + + + L VS+N L S L ++ L +S N L +
Sbjct: 414 FLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLKTLPDA 469
Query: 458 CLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
L F L ++ + +NQ + IF + L + L+ N + P
Sbjct: 470 SL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 115/312 (36%), Gaps = 43/312 (13%)
Query: 406 LQRLPFI-LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS 464
LQ L F+ + + L + +N G I L ++L L + +G LAN
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-----LAN--- 104
Query: 465 LSLLDLRKNQFRGSI--PQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEVLDVGNN 521
L +L L + G++ F L L L DN ++ P S N VLD+ N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 522 KINDA-------FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRI--IDISR 572
K+ F TL RL + L+ + PF I +D+S
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQD---MNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 573 NGFTGLLPARYFQSLKA-------MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEM 625
NGF + R+F ++ + + N + N D + T+KG LE
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF-----TFKG--LEA 274
Query: 626 ERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNL 685
V T DLS ++ ++ + L+ L + N + LT L L L
Sbjct: 275 SGV----KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELAL 330
Query: 686 SFNQLVGPIPQG 697
NQL +P G
Sbjct: 331 DTNQL-KSVPDG 341
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 176/467 (37%), Gaps = 71/467 (15%)
Query: 87 FGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL 146
F L HL+LS ++ S + S LS L L+L + ++ +L NLT L
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN----PYQTLGVTSLFPNLTNL 151
Query: 147 RYLLLDNVQMFSVVPXXXXXXXXXXXXXXXXGNCFL---------------------RGE 185
+ L + NV+ FS +
Sbjct: 152 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 211
Query: 186 FPIDIFH--FPFLRQLTLSDNGLLT---GNLPTSNWSSPLRILDLSITKFSG-------K 233
F ++IF +R L L D L LP SSP++ L + + K
Sbjct: 212 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 271
Query: 234 IPDTIGNLRDLKFLDLYVCYFDG---------QVPASLSNLKQLTVLNLEDNQFS--GEF 282
+ I L +++F D C +G V + L ++ +T+ L QF +
Sbjct: 272 LLRYILELSEVEFDD---CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 328
Query: 283 PDVFGNLSKLTRISLAHLNFTGQLPLS-AFNLTQLSLLELSRN----QFVGQLPCHASCL 337
V+ L K+ RI++ + + +P S + +L L L+LS N +++ C +
Sbjct: 329 STVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 387
Query: 338 PLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELR 397
L L L N L + L T +NL LD+S N + QWP ++R
Sbjct: 388 SLQTLVLSQNHLRSMQKTGEI-LLTLKNLTSLDISRNTF-HPMPDSCQWP------EKMR 439
Query: 398 HLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ 457
L++ S ++ + + + L VS+N L S L ++ L +S N L +
Sbjct: 440 FLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLKTLPDA 495
Query: 458 CLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504
L F L ++ + NQ + IF + L + L+ N + P
Sbjct: 496 SL--FPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 668 GEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQCSNYE 727
G +P + L ++ FN+++ P+ +G++ + N SFI +Q +Y
Sbjct: 4 GNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGY--------RQKDSYI 55
Query: 728 VPPAPMPE--EDDTSSSWAWFDWKIVVM 753
P+ ED W W IV++
Sbjct: 56 ASQGPLLHTIEDFWRMIWEWKSCSIVML 83
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498
+ ++ L+LS+N +S + P L + L L + +N+ + ++ I S C L L L++NE
Sbjct: 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPSAC--LSRLFLDNNE 117
Query: 499 LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSF 547
L SL + +LE+L + NNK+ L +L+VL L N
Sbjct: 118 LRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEI 162
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 235 PDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTR 294
P T L L L L C P L L L L+DN D F +L LT
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 295 ISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFVGQLP 331
+ L H N +P AF L L L L +N+ P
Sbjct: 157 LFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%)
Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
R+ L + L P L+ ++YL L +N+L + + +L+ L L N+
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
+ F + L L L+ N + P + + G L L + N ++ A L
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 224
Query: 536 RLQVLVLRSNSF 547
LQ L L N +
Sbjct: 225 ALQYLRLNDNPW 236
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%)
Query: 417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS-LSGMIPQCLANFDSLSLLDLRKNQF 475
+ L + N L G ++ L+ +E L+LS+N+ L + P L L L +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
+ P +F L L L DN L+ + + G+L L + N+I + L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH 592
L L+L N + P R L + + N + +LPA L+++ +
Sbjct: 177 SLDRLLLHQNH----VARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQY 228
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 53/141 (37%), Gaps = 26/141 (18%)
Query: 195 FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF 254
L QL LSDN + LR++D P T L L L L C
Sbjct: 80 LLEQLDLSDN-------------AQLRVVD----------PTTFRGLGHLHTLHLDRCGL 116
Query: 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-L 313
P L L L L+DN + F +L LT + L H N +P AF L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL-HGNRIPSVPEHAFRGL 175
Query: 314 TQLSLLELSRNQFVGQLPCHA 334
L L L +N V ++ HA
Sbjct: 176 HSLDRLLLHQNH-VARVHPHA 195
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 20 SWNKDGDCCSWDGI---ICDEMTGHVIGLDLSSSWLLGTLHPNSTXXXXXXXXXXXXACN 76
S +++G C G I +T V LDLS++ + T NS N
Sbjct: 3 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSN 60
Query: 77 DFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTF 136
N + S F L HL+LS++Y S + S LS L L+L + +T E F
Sbjct: 61 GINTIEEDS-FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 119
Query: 137 NNLAKNLTELRYLLLDNVQMFSVV 160
+ +LT+L+ L + N+ F+ +
Sbjct: 120 S----HLTKLQILRVGNMDTFTKI 139
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 463 DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNK 522
+++ LDL N+ +C +L AL L N + S ++ G LE LD+ N
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 523 INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRI------IDISRNGFT 576
+++ W L L L L N + ++ S LR+ I R F
Sbjct: 86 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 577 GL 578
GL
Sbjct: 146 GL 147
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 235 PDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTR 294
P T L L L L C P L L L L+DN D F +L LT
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 295 ISLAHLNFTGQLPLSAFN-LTQLSLLELSRNQFVGQLP 331
+ L H N +P AF L L L L +N+ P
Sbjct: 158 LFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%)
Query: 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
R+ L + L P L+ ++YL L +N+L + + +L+ L L N+
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535
+ F + L L L+ N + P + + G L L + N ++ A L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 536 RLQVLVLRSNSF 547
LQ L L N +
Sbjct: 226 ALQYLRLNDNPW 237
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ 277
S LR L+L++ +IP+ + L L LDL + P S L L L + +Q
Sbjct: 185 SNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Query: 278 FSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFN-LTQLSLLELSRN 324
+ F NL L I+LAH N T LP F L L + L N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 366 LVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLP---FILSSRIRFLSV 422
L +++ SNNK+T +++ E S V + + SN L+ + F ++ L +
Sbjct: 59 LRKINFSNNKIT----DIEEGAFEGASGVN--EILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 423 SDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475
N++T S LS++ L+L +N ++ + P SLS L+L N F
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 521 NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP 580
NKI + P +TA L L +N F I + P+LR I+ S N T
Sbjct: 24 NKIPEHIPQYTAELR------LNNNEF---TVLEATGIFKKLPQLRKINFSNNKIT---- 70
Query: 581 ARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNN 640
D + + ++G ++ + V +M + L T+ L +N
Sbjct: 71 ---------------DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
Query: 641 RFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFN 688
R + LSS++LL+ N + P +L +LS LNL N
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 227 ITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVF 286
+T+ +P+TI +R L P + S K+L ++L +NQ S PD F
Sbjct: 23 LTEIPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 287 GNLSKLTRISLAHLNFTGQLPLSAF 311
L L + L + N +LP S F
Sbjct: 77 QGLRSLNSLVL-YGNKITELPKSLF 100
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ----L 690
+DLS N + ++ + L+LLN S N+L + +E SL+ L L+L+ N L
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQELL 96
Query: 691 VGP 693
VGP
Sbjct: 97 VGP 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 227 ITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVF 286
+T+ +P+TI +R L P + S K+L ++L +NQ S PD F
Sbjct: 23 LTEIPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 287 GNLSKLTRISLAHLNFTGQLPLSAF 311
L L + L + N +LP S F
Sbjct: 77 QGLRSLNSLVL-YGNKITELPKSLF 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,508,213
Number of Sequences: 62578
Number of extensions: 989384
Number of successful extensions: 2930
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2044
Number of HSP's gapped (non-prelim): 495
length of query: 801
length of database: 14,973,337
effective HSP length: 107
effective length of query: 694
effective length of database: 8,277,491
effective search space: 5744578754
effective search space used: 5744578754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)