Query 044830
Match_columns 801
No_of_seqs 740 out of 5562
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.6E-69 5.7E-74 658.1 44.4 565 16-719 46-612 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.5E-56 9.8E-61 541.9 40.1 516 66-717 69-587 (968)
3 KOG4194 Membrane glycoprotein 100.0 4E-36 8.6E-41 309.1 7.4 342 170-543 102-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.9E-35 6.3E-40 302.8 7.4 368 219-686 79-447 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4E-38 8.7E-43 310.4 -17.5 468 170-711 45-561 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 6E-38 1.3E-42 309.1 -18.4 482 42-582 47-545 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.1E-34 4.5E-39 312.4 -5.2 482 95-689 2-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9.7E-34 2.1E-38 307.2 -6.5 505 45-688 3-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 7.2E-33 1.6E-37 286.7 -3.6 385 64-542 5-393 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.3E-31 2.7E-36 277.5 -5.2 366 41-500 8-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4.2E-27 246.3 27.7 347 161-546 551-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 5.5E-22 1.2E-26 242.3 27.2 270 236-545 552-835 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.9E-25 8.5E-30 218.8 -5.9 414 219-688 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 9.5E-24 2.1E-28 209.0 -1.8 251 69-327 70-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.2E-20 2.5E-25 213.5 17.1 263 315-697 202-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2E-20 4.4E-25 211.5 16.6 268 290-677 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.6E-18 3.4E-23 197.8 13.2 223 397-691 202-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.4E-18 5.3E-23 196.3 12.0 97 267-377 179-275 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.5E-19 9.8E-24 188.7 -0.5 220 433-690 75-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.6E-18 9.9E-23 181.0 0.4 240 414-692 22-292 (319)
21 KOG0617 Ras suppressor protein 99.6 4E-17 8.6E-22 143.8 -5.3 165 61-311 28-193 (264)
22 KOG0617 Ras suppressor protein 99.5 1.4E-16 2.9E-21 140.4 -4.1 159 486-696 32-191 (264)
23 PLN03150 hypothetical protein; 99.5 6.5E-14 1.4E-18 159.9 10.7 118 564-724 419-538 (623)
24 PLN03150 hypothetical protein; 99.3 4.8E-12 1.1E-16 144.6 10.0 103 19-125 390-500 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 8.2E-13 1.8E-17 138.0 -4.1 172 416-667 76-247 (722)
26 KOG1909 Ran GTPase-activating 99.0 1.8E-11 3.9E-16 121.2 -3.7 98 486-583 156-261 (382)
27 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.3E-16 128.6 -4.7 107 216-327 73-179 (722)
28 KOG1909 Ran GTPase-activating 99.0 4.7E-11 1E-15 118.2 -1.3 228 61-303 25-283 (382)
29 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 118.6 0.7 211 88-304 118-340 (505)
30 COG4886 Leucine-rich repeat (L 99.0 8.4E-10 1.8E-14 120.9 7.2 65 630-697 232-296 (394)
31 PF14580 LRR_9: Leucine-rich r 98.9 2.8E-10 6.1E-15 106.2 1.9 106 438-548 18-126 (175)
32 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4.1E-15 111.1 0.2 128 217-350 283-412 (490)
33 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 118.6 7.4 178 395-583 117-297 (394)
34 KOG3207 Beta-tubulin folding c 98.9 1.8E-10 3.9E-15 117.3 -0.5 88 216-303 195-284 (505)
35 PF14580 LRR_9: Leucine-rich r 98.9 9.1E-10 2E-14 102.8 3.9 124 414-542 18-147 (175)
36 KOG1259 Nischarin, modulator o 98.8 4.8E-10 1E-14 108.3 0.0 128 416-549 285-413 (490)
37 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.8E-14 81.7 3.8 61 630-690 1-61 (61)
38 KOG4658 Apoptotic ATPase [Sign 98.7 5.9E-09 1.3E-13 121.8 4.2 128 66-202 545-676 (889)
39 KOG0531 Protein phosphatase 1, 98.7 2.8E-09 6.1E-14 116.8 1.4 127 414-547 71-198 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.4E-13 119.6 4.1 106 194-300 545-652 (889)
41 KOG2120 SCF ubiquitin ligase, 98.6 3.2E-10 7E-15 109.5 -7.9 183 67-277 186-374 (419)
42 PF13855 LRR_8: Leucine rich r 98.6 2.4E-08 5.2E-13 76.4 3.4 59 440-498 2-60 (61)
43 KOG0531 Protein phosphatase 1, 98.6 7.2E-09 1.6E-13 113.6 0.4 241 395-695 73-322 (414)
44 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 6.9E-13 107.0 -6.5 124 395-523 165-291 (1096)
45 KOG1859 Leucine-rich repeat pr 98.2 5.8E-08 1.3E-12 105.0 -6.1 180 161-350 102-292 (1096)
46 KOG2982 Uncharacterized conser 98.2 3.8E-07 8.3E-12 88.7 -0.2 205 43-255 48-262 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.1 2.8E-07 6.2E-12 88.4 -1.2 40 62-101 26-68 (388)
48 KOG2120 SCF ubiquitin ligase, 98.1 4.4E-08 9.6E-13 95.0 -6.9 226 145-375 137-374 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.0 5.6E-07 1.2E-11 86.4 -1.4 135 194-328 157-317 (388)
50 KOG4341 F-box protein containi 97.9 1.8E-07 3.9E-12 95.3 -7.4 278 67-349 139-438 (483)
51 KOG2982 Uncharacterized conser 97.9 4.5E-06 9.7E-11 81.4 1.9 209 335-571 69-287 (418)
52 KOG4579 Leucine-rich repeat (L 97.8 1.6E-06 3.5E-11 74.6 -2.8 64 631-697 78-141 (177)
53 KOG4579 Leucine-rich repeat (L 97.7 1.5E-06 3.3E-11 74.8 -3.9 107 417-526 29-138 (177)
54 PF12799 LRR_4: Leucine Rich r 97.7 2.4E-05 5.3E-10 54.6 2.4 36 631-667 2-37 (44)
55 PRK15386 type III secretion pr 97.6 0.00023 4.9E-09 75.2 9.4 76 435-523 48-124 (426)
56 PF12799 LRR_4: Leucine Rich r 97.6 5.6E-05 1.2E-09 52.8 3.2 37 67-105 2-38 (44)
57 KOG3665 ZYG-1-like serine/thre 97.5 4.6E-05 9.9E-10 87.4 2.1 87 170-258 173-266 (699)
58 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.3E-09 65.9 5.7 106 268-375 44-151 (233)
59 KOG1644 U2-associated snRNP A' 97.4 0.00033 7.1E-09 65.1 5.8 58 417-476 44-101 (233)
60 PRK15386 type III secretion pr 97.2 0.00092 2E-08 70.7 7.9 15 363-377 51-65 (426)
61 KOG3665 ZYG-1-like serine/thre 97.2 0.0002 4.4E-09 82.2 2.7 87 64-156 146-232 (699)
62 PF08263 LRRNT_2: Leucine rich 97.1 0.00012 2.6E-09 51.0 -0.2 32 5-36 7-43 (43)
63 KOG4341 F-box protein containi 97.0 4.2E-05 9E-10 78.5 -4.2 282 40-326 138-438 (483)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0017 3.7E-08 58.3 6.7 100 415-519 12-111 (129)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0026 5.7E-08 57.1 6.1 106 433-543 6-111 (129)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00053 1.2E-08 66.6 0.8 61 462-524 42-104 (260)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.5E-08 63.3 2.7 89 435-525 39-130 (260)
68 KOG2123 Uncharacterized conser 96.1 0.00034 7.3E-09 68.0 -4.5 84 415-502 19-103 (388)
69 KOG2123 Uncharacterized conser 96.0 0.0003 6.5E-09 68.4 -5.3 86 438-527 18-104 (388)
70 KOG1947 Leucine rich repeat pr 95.6 0.00086 1.9E-08 75.7 -4.4 13 112-124 211-223 (482)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0088 1.9E-07 34.6 1.8 20 632-652 2-21 (22)
72 PF00560 LRR_1: Leucine Rich R 95.5 0.0058 1.2E-07 35.4 0.8 21 655-676 1-21 (22)
73 KOG1947 Leucine rich repeat pr 94.7 0.007 1.5E-07 68.3 -0.9 238 64-326 186-439 (482)
74 KOG4308 LRR-containing protein 93.6 0.00046 9.9E-09 75.9 -12.6 36 632-667 264-303 (478)
75 KOG4308 LRR-containing protein 92.7 0.0007 1.5E-08 74.4 -13.0 138 441-578 146-305 (478)
76 KOG0473 Leucine-rich repeat pr 90.7 0.01 2.2E-07 56.6 -5.6 80 40-125 42-121 (326)
77 KOG3864 Uncharacterized conser 90.4 0.028 6.1E-07 52.7 -3.0 114 6-123 67-184 (221)
78 PF13504 LRR_7: Leucine rich r 88.8 0.22 4.8E-06 26.6 1.0 10 656-665 3-12 (17)
79 smart00370 LRR Leucine-rich re 84.3 0.81 1.8E-05 27.5 1.9 18 91-108 2-19 (26)
80 smart00369 LRR_TYP Leucine-ric 84.3 0.81 1.8E-05 27.5 1.9 18 91-108 2-19 (26)
81 smart00369 LRR_TYP Leucine-ric 84.0 0.69 1.5E-05 27.8 1.5 13 655-667 3-15 (26)
82 smart00370 LRR Leucine-rich re 84.0 0.69 1.5E-05 27.8 1.5 13 655-667 3-15 (26)
83 KOG0473 Leucine-rich repeat pr 82.6 0.033 7.1E-07 53.2 -7.1 88 237-327 37-124 (326)
84 PF13516 LRR_6: Leucine Rich r 80.6 0.39 8.4E-06 28.3 -0.5 15 631-645 3-17 (24)
85 KOG3864 Uncharacterized conser 75.6 0.54 1.2E-05 44.4 -1.4 33 93-125 103-135 (221)
86 KOG4242 Predicted myosin-I-bin 67.8 13 0.00029 39.9 6.4 59 417-475 415-480 (553)
87 smart00365 LRR_SD22 Leucine-ri 64.1 6.2 0.00013 23.8 1.9 14 91-104 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 57.7 33 0.00072 37.1 7.1 57 632-688 415-478 (553)
89 smart00364 LRR_BAC Leucine-ric 56.5 7.3 0.00016 23.5 1.2 12 656-667 4-15 (26)
90 smart00368 LRR_RI Leucine rich 56.2 9.7 0.00021 23.4 1.9 14 91-104 2-15 (28)
91 PF08374 Protocadherin: Protoc 34.0 40 0.00087 32.3 3.1 24 748-771 38-61 (221)
92 PTZ00382 Variant-specific surf 30.6 33 0.00072 28.6 1.8 20 750-769 68-87 (96)
93 PF15179 Myc_target_1: Myc tar 30.2 25 0.00055 32.4 1.1 23 748-770 18-40 (197)
94 smart00367 LRR_CC Leucine-rich 27.6 47 0.001 19.7 1.6 11 194-204 2-12 (26)
95 PF04478 Mid2: Mid2 like cell 27.2 38 0.00082 30.6 1.6 7 777-783 101-107 (154)
96 PRK09459 pspG phage shock prot 26.4 67 0.0015 25.0 2.6 16 785-800 59-74 (76)
97 TIGR00864 PCC polycystin catio 25.5 37 0.0008 45.3 1.7 33 636-668 1-33 (2740)
98 KOG3763 mRNA export factor TAP 23.9 38 0.00082 37.5 1.2 64 485-548 216-283 (585)
99 PF03302 VSP: Giardia variant- 21.1 60 0.0013 35.2 2.1 24 748-771 367-390 (397)
100 TIGR00864 PCC polycystin catio 20.7 46 0.00099 44.5 1.2 23 621-643 10-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-69 Score=658.07 Aligned_cols=565 Identities=32% Similarity=0.533 Sum_probs=401.8
Q ss_pred CCCCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCccccc-ccCCCCCC
Q 044830 16 PKTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSN-FGQFTKLT 94 (801)
Q Consensus 16 ~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~~l~~L~ 94 (801)
..+.+|+.+.+||.|+||.|+. .++|+.|||+++++.|.+++ .+..+++|++|+|++|++.+. +|.. +..+++|+
T Consensus 46 ~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~ 121 (968)
T PLN00113 46 KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLR 121 (968)
T ss_pred ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCC
Confidence 3578998888999999999986 47999999999999998877 889999999999999999765 5654 45899999
Q ss_pred EEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccE
Q 044830 95 HLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLIS 174 (801)
Q Consensus 95 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~ 174 (801)
+|+|++|.+++.+|. +.+++|++|++++|. +. +.+|..++++++|++|++++|.+.+..|..+.++ ++|++
T Consensus 122 ~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~--~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~ 192 (968)
T PLN00113 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNM--LS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL--TSLEF 192 (968)
T ss_pred EEECcCCccccccCc--cccCCCCEEECcCCc--cc---ccCChHHhcCCCCCEEECccCcccccCChhhhhC--cCCCe
Confidence 999999999887774 457788888888772 22 3445555556666666666655555555555555 55555
Q ss_pred EEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccC
Q 044830 175 LSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYF 254 (801)
Q Consensus 175 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 254 (801)
|+|++|.+.+.+|..+.++++|++|++++ |.+++.+|..++++++|++|++++|.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~------------------------n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGY------------------------NNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcC------------------------CccCCcCChhHhcCCCCCEEECcCcee
Confidence 55555555544444444444444444444 444445555555566666666666666
Q ss_pred cccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC
Q 044830 255 DGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA 334 (801)
Q Consensus 255 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~ 334 (801)
.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 55555556666666666666666655555555566666666666666655555555555556666555555554444333
Q ss_pred -CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc
Q 044830 335 -SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL 413 (801)
Q Consensus 335 -~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 413 (801)
.+++|+.|++++|.+.+.+|..+.. +++
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~---~~~------------------------------------------------ 357 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGK---HNN------------------------------------------------ 357 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhC---CCC------------------------------------------------
Confidence 4444444444444444444444433 333
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
|+.|++++|++++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..|..++.|+.|+
T Consensus 358 ---L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 358 ---LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred ---CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 44445555555555566666666677777777777766776677777777777777777777777777777777777
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N 573 (801)
+++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+ ..+++|+.|+|++|
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N 509 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL----GSLSELMQLKLSEN 509 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh----hhhhccCEEECcCC
Confidence 77777777777666677777777777777776666654 34678888888888877666554 67888899999999
Q ss_pred cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc
Q 044830 574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL 653 (801)
Q Consensus 574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 653 (801)
++++.+|..+ .+ ++.|++|||++|.+++.+|..++.+
T Consensus 510 ~l~~~~p~~~-~~------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 510 KLSGEIPDEL-SS------------------------------------------CKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred cceeeCChHH-cC------------------------------------------ccCCCEEECCCCcccccCChhHhCc
Confidence 9988888652 21 4567899999999999999999999
Q ss_pred ccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCCC
Q 044830 654 SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFAL 719 (801)
Q Consensus 654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l 719 (801)
++|+.|+|++|+++|.+|..+..+++|+.|++++|+++|.+|..++|.+|...+|.||+++||.+.
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 612 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDT 612 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999998653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.5e-56 Score=541.85 Aligned_cols=516 Identities=32% Similarity=0.509 Sum_probs=370.6
Q ss_pred CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCC-cCCCCCCEEeCCCCcCCCccccCchhHhhcCCC
Q 044830 66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQI-SRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLT 144 (801)
Q Consensus 66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 144 (801)
.+++.|+|++|.+.+. ++..|..+++|++|+|++|.+++.+|..+ ..+++|++|++++|
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n------------------- 128 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN------------------- 128 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-------------------
Confidence 3577777777777665 55667777777777777777776666543 36666666666666
Q ss_pred CCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEE
Q 044830 145 ELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRIL 223 (801)
Q Consensus 145 ~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L 223 (801)
.+.+.+|. ..+ ++|++|+|++|.+.+.+|..++++++|++|++++| ...+.+|..+ .+++|++|
T Consensus 129 ----------~l~~~~p~--~~l--~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 129 ----------NFTGSIPR--GSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred ----------ccccccCc--ccc--CCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCee
Confidence 22222221 112 44555555555555555555555555555555554 2222222222 33444444
Q ss_pred EccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeee
Q 044830 224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT 303 (801)
Q Consensus 224 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 303 (801)
++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 44444444455555555666666666666655555555555556666666555555555555555555555555555555
Q ss_pred eeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcccccccc
Q 044830 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQL 383 (801)
Q Consensus 304 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 383 (801)
+.+|..+.++++|++|++++|.+ .+.+|..+.. +++|+.|++++|.+++..|..
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l-----------------------~~~~p~~~~~---l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSL-----------------------SGEIPELVIQ---LQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccCchhHhhccCcCEEECcCCee-----------------------ccCCChhHcC---CCCCcEEECCCCccCCcCChh
Confidence 55555555555555555555544 4455555444 556666666666655444432
Q ss_pred CCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCC
Q 044830 384 DQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFD 463 (801)
Q Consensus 384 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 463 (801)
. . .+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..++
T Consensus 328 ~-~--------------------------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 328 L-T--------------------------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred H-h--------------------------cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 2 1 134677777777888878888899999999999999999999999999999
Q ss_pred CCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEcc
Q 044830 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR 543 (801)
Q Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 543 (801)
+|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|++.+.++..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchh
Q 044830 544 SNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDL 623 (801)
Q Consensus 544 ~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (801)
+|++.+.+|..+ ..++|+.||+++|++++.+|..+ .+
T Consensus 461 ~n~~~~~~p~~~-----~~~~L~~L~ls~n~l~~~~~~~~-~~------------------------------------- 497 (968)
T PLN00113 461 RNKFFGGLPDSF-----GSKRLENLDLSRNQFSGAVPRKL-GS------------------------------------- 497 (968)
T ss_pred CceeeeecCccc-----ccccceEEECcCCccCCccChhh-hh-------------------------------------
Confidence 999998777643 45899999999999999888542 22
Q ss_pred hhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCC-CCCC
Q 044830 624 EMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGK-QFDS 702 (801)
Q Consensus 624 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~ 702 (801)
++.|+.|||++|++.+.+|+.++++++|++|+|++|.++|.+|..+..+++|+.|++++|+++|.+|... .+..
T Consensus 498 -----l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 498 -----LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred -----hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999753 3444
Q ss_pred cCcCcCCCCCCCCCC
Q 044830 703 FQNDSFIGNLGLCGF 717 (801)
Q Consensus 703 ~~~~~~~gn~~lcg~ 717 (801)
+......+|+..+..
T Consensus 573 L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 573 LVQVNISHNHLHGSL 587 (968)
T ss_pred cCEEeccCCcceeeC
Confidence 555566677655433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-36 Score=309.11 Aligned_cols=342 Identities=26% Similarity=0.280 Sum_probs=191.6
Q ss_pred CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 249 (801)
++|+++++.+|.++ .+|.......+|+.|+|.+|.+.+..-.....++.|+.||||.|.|+.....+|..-.++++|+|
T Consensus 102 ~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 102 PNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred Ccceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 44444444444433 33333333344444444444222221111113444455555555554333334444455666666
Q ss_pred ccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccccc
Q 044830 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ 329 (801)
Q Consensus 250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 329 (801)
++|.|+......|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|.+.-.--..|.++++|+.|.+..|.+...
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 66666555555566666666666666666655555666666666666666665533234455666666666666666654
Q ss_pred CCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCC
Q 044830 330 LPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR 408 (801)
Q Consensus 330 ~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 408 (801)
-...+ .+.++++|+|+.|+++..-..|+++ +++|+.|++|+|.|...-+.. |
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg---Lt~L~~L~lS~NaI~rih~d~--W---------------------- 313 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFG---LTSLEQLDLSYNAIQRIHIDS--W---------------------- 313 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccc---cchhhhhccchhhhheeecch--h----------------------
Confidence 44444 6666666666666666555556666 667777777777665321111 1
Q ss_pred CCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCC---ccccC
Q 044830 409 LPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP---QIFSK 485 (801)
Q Consensus 409 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~ 485 (801)
..+++|++|+|++|+++..-+.+|..+..|++|.|++|.++..-...|.++++|++|||++|.++..+- ..|.+
T Consensus 314 ---sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 314 ---SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred ---hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 123556666666666665555566666666666666666665555556666666666666666655443 23556
Q ss_pred CCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEcc
Q 044830 486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLR 543 (801)
Q Consensus 486 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 543 (801)
+++|+.|++.+|++..+....|.++..|++|||.+|.|..+-|.+|..+ .|+.|.+.
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 6666666666666665545566666666666666666666666666666 66666554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-35 Score=302.78 Aligned_cols=368 Identities=20% Similarity=0.202 Sum_probs=194.0
Q ss_pred CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298 (801)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 298 (801)
.-+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3455666666666655666666677777777666665 455544444556666666666666656666666666666666
Q ss_pred CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcc
Q 044830 299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLT 377 (801)
Q Consensus 299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 377 (801)
.|.++..--..+..-.++++|+|++|.|+..-...+ .+.+|..|.|+.|.++ .+|...+. +++.|+.|+|..|+|
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk--~L~~L~~LdLnrN~i- 233 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFK--RLPKLESLDLNRNRI- 233 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhh--hcchhhhhhccccce-
Confidence 666664333334444566666666666664444333 4445555555555555 33332221 244455555544443
Q ss_pred ccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCc
Q 044830 378 GQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQ 457 (801)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 457 (801)
...--..|.++++|+.|.+..|.+...-..
T Consensus 234 --------------------------------------------------rive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 234 --------------------------------------------------RIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred --------------------------------------------------eeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 321122344455555555555555544444
Q ss_pred cccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCC
Q 044830 458 CLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRL 537 (801)
Q Consensus 458 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 537 (801)
+|.++.++++|+|..|++...-.+++-+++.|+.|++++|.|..+.++++..+++|++|+|++|+++...+..|..+..|
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 55555555555555555554444444555555555555555555555555555555555555555555555555555555
Q ss_pred CEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEE
Q 044830 538 QVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILT 617 (801)
Q Consensus 538 ~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (801)
++|+|++|++.-.-... +..+.+|+.|||++|.+++.|-+..
T Consensus 344 e~LnLs~Nsi~~l~e~a----f~~lssL~~LdLr~N~ls~~IEDaa---------------------------------- 385 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGA----FVGLSSLHKLDLRSNELSWCIEDAA---------------------------------- 385 (873)
T ss_pred hhhcccccchHHHHhhH----HHHhhhhhhhcCcCCeEEEEEecch----------------------------------
Confidence 55555555544222111 2345555555555555554433210
Q ss_pred eccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCc
Q 044830 618 YKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLS 686 (801)
Q Consensus 618 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 686 (801)
..+..++.|+.|+|.+|++..+.-.+|..+.+|+.|||.+|.|-..-|.+|..+ .|+.|-+.
T Consensus 386 ------~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 386 ------VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ------hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 001123445555555555554444555555555555555555555555555555 55555543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4e-38 Score=310.36 Aligned_cols=468 Identities=25% Similarity=0.346 Sum_probs=292.8
Q ss_pred CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEE
Q 044830 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLD 248 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 248 (801)
..++.+.+++|.+. .+...+.++..|.+|++.+|.... .|+.+ .+..++.++.++|+++ .+|+.+..+.+|+.++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 45777777777776 344556777777777777773322 33333 5666677777777776 6677777777777777
Q ss_pred cccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccc
Q 044830 249 LYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG 328 (801)
Q Consensus 249 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~ 328 (801)
+++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|++... |....+++.|++||...|-+..
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLET 197 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhhc
Confidence 7777766 45666777777777777777776 4566666677777777777777643 3333347777777777766653
Q ss_pred cCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCC
Q 044830 329 QLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQR 408 (801)
Q Consensus 329 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 408 (801)
..|....+.+|+.|++..|++. .+| .|.. +..|+++.++.|.+. .+|......+. ++..||+++|+++.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~g---cs~L~Elh~g~N~i~-~lpae~~~~L~-----~l~vLDLRdNklke 266 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPG---CSLLKELHVGENQIE-MLPAEHLKHLN-----SLLVLDLRDNKLKE 266 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCc---cHHHHHHHhcccHHH-hhHHHHhcccc-----cceeeecccccccc
Confidence 3333336666777777777765 455 3333 566677777776664 22222211222 56666667776666
Q ss_pred CCCCc--cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc--------------------------------
Q 044830 409 LPFIL--SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM-------------------------------- 454 (801)
Q Consensus 409 ~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-------------------------------- 454 (801)
+|... +.+|+.||+++|.++ .+|..++++ .|+.|.+.+|.+...
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 66443 456666667666666 345566666 666666666654210
Q ss_pred ------CCccc---cCCCCCCEEeCCCCcccccCCccccCC--CCccEEECCCCcCCCCCCccccCCCCCcE-EeCCCCc
Q 044830 455 ------IPQCL---ANFDSLSLLDLRKNQFRGSIPQIFSKC--YDLVALNLNDNELEGKLPPSLANCGDLEV-LDVGNNK 522 (801)
Q Consensus 455 ------~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~Ls~n~ 522 (801)
.+..+ ....+.+.|++++-+++....+.|... .-....+++.|++. .+|..+..+..+.. +++++|+
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence 00000 111244555555555552222223211 12556677777766 55665555544443 3444444
Q ss_pred CCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccc
Q 044830 523 INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY 602 (801)
Q Consensus 523 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~ 602 (801)
+ +.+|..+..+++|+.|+|++|.+.. +|..++.+-.|+.||+|.|+|. .+|..+ ..
T Consensus 424 i-sfv~~~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~-y~---------------- 479 (565)
T KOG0472|consen 424 I-SFVPLELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFR-MLPECL-YE---------------- 479 (565)
T ss_pred c-ccchHHHHhhhcceeeecccchhhh-----cchhhhhhhhhheecccccccc-cchHHH-hh----------------
Confidence 4 6777778888888889998887763 3333467777888999988886 666432 11
Q ss_pred cccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCe
Q 044830 603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSV 682 (801)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 682 (801)
+..++.+-.++|++....|..+++|.+|..|||.+|.+. .+|..++++++|++
T Consensus 480 --------------------------lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 480 --------------------------LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred --------------------------HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 122445556679998777777999999999999999998 78999999999999
Q ss_pred EeCcCCcceecCCCC--CCCCCcCcCcCCCC
Q 044830 683 LNLSFNQLVGPIPQG--KQFDSFQNDSFIGN 711 (801)
Q Consensus 683 L~ls~N~l~g~iP~~--~~~~~~~~~~~~gn 711 (801)
|++++|++. .|.. ..-+|..-.+|.++
T Consensus 533 LeL~gNpfr--~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 533 LELDGNPFR--QPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred EEecCCccC--CCHHHHhccChHHHHHHhcc
Confidence 999999998 5543 22233333445544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6e-38 Score=309.11 Aligned_cols=482 Identities=29% Similarity=0.360 Sum_probs=275.0
Q ss_pred EEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEe
Q 044830 42 VIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALD 121 (801)
Q Consensus 42 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~ 121 (801)
...+++++|.+. .+.+ .+.++..+.+|++++|++.. .|++++.+..++.|+.++|+++ .+|..+..+..|+.|+
T Consensus 47 l~~lils~N~l~-~l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchh-hccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 445566666654 2233 56666667777777766643 5556666777777777777666 4566666666677776
Q ss_pred CCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEec
Q 044830 122 LSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTL 201 (801)
Q Consensus 122 Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 201 (801)
.++|. + ..++..++.+..|..++..+|+++.. |..+..+ .++..+++.+|.+....|. .-+++.|++||.
T Consensus 121 ~s~n~--~----~el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~--~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 121 CSSNE--L----KELPDSIGRLLDLEDLDATNNQISSL-PEDMVNL--SKLSKLDLEGNKLKALPEN-HIAMKRLKHLDC 190 (565)
T ss_pred ccccc--e----eecCchHHHHhhhhhhhccccccccC-chHHHHH--HHHHHhhccccchhhCCHH-HHHHHHHHhccc
Confidence 66662 1 34445555666666666666655443 3334444 5555566666655533222 222555555555
Q ss_pred cCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCccccc-CCCCCCEEEcCCCCCc
Q 044830 202 SDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLS-NLKQLTVLNLEDNQFS 279 (801)
Q Consensus 202 s~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~ 279 (801)
..| .. +.+|... .+.+|+.|+|..|.+. .+| .|..+..|++|.+..|.+. .+|.+.. ++..+.+||+.+|+++
T Consensus 191 ~~N-~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 191 NSN-LL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred chh-hh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 555 22 2233333 4455555555555554 333 4455555555555555544 2333322 4555555555555554
Q ss_pred cccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcC
Q 044830 280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN 359 (801)
Q Consensus 280 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 359 (801)
..|+.+.-+.+|++||+++|.++ .+|..++++ .|+.|.+.+|++. ++...+-+
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr------------------------TiRr~ii~ 318 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR------------------------TIRREIIS 318 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH------------------------HHHHHHHc
Confidence 44444545555555555555554 344445554 4555555555443 12111111
Q ss_pred CCCCCCccEEE-------ccCCCc-cccccccCCCCccc-ccceeeeEEEecCCCCCCCCCCcc-----ccccEEEecCC
Q 044830 360 LSTSENLVELD-------LSNNKL-TGQIFQLDQWPVER-ISSVELRHLDVQSNLLQRLPFILS-----SRIRFLSVSDN 425 (801)
Q Consensus 360 l~~~~~L~~L~-------Ls~n~l-~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~-----~~L~~L~L~~n 425 (801)
.....-|++|. ++.-.= +...+....+.++. ....+.+.|++++-+++.+|...+ .-++..+++.|
T Consensus 319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskN 398 (565)
T KOG0472|consen 319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKN 398 (565)
T ss_pred ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccc
Confidence 11000111110 000000 00000000011110 011255667777777777764332 23667888888
Q ss_pred CCCCCCccccccCCCCCE-EECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC
Q 044830 426 KLTGEFPSSICNLSTIEY-LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP 504 (801)
Q Consensus 426 ~l~~~~~~~l~~l~~L~~-L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 504 (801)
++. ++|..+..+..+.+ +.+++|.++ .+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|.+. .+|
T Consensus 399 qL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP 474 (565)
T KOG0472|consen 399 QLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP 474 (565)
T ss_pred hHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence 887 66776666555444 445555554 77778888888888888888776 67888888888888888888887 677
Q ss_pred ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHH
Q 044830 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPAR 582 (801)
Q Consensus 505 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~ 582 (801)
..+.....++.+-.++|++....+..+.++.+|++|+|.+|.+.. +|..++++.+|++|++++|+|. .|.+
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-----IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-----IPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-----CChhhccccceeEEEecCCccC--CCHH
Confidence 777777777777778888887777778888889999999888763 3445589999999999999997 4543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-34 Score=312.40 Aligned_cols=482 Identities=26% Similarity=0.360 Sum_probs=266.5
Q ss_pred EEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccE
Q 044830 95 HLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLIS 174 (801)
Q Consensus 95 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~ 174 (801)
.+|++.+.+. .+|..+-.-..++.|+++.|. +.....+.+... -+|+.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~-----------------------------~l~~pl~~~~~~--v~L~~ 49 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNS-----------------------------LLSRPLEFVEKR--VKLKS 49 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccc-----------------------------cccCchHHhhhe--eeeEE
Confidence 3566666665 556555555557777777762 111111111111 33666
Q ss_pred EEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEEccccc
Q 044830 175 LSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY 253 (801)
Q Consensus 175 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 253 (801)
|++++|.+. ..|..+..+.+|+.|+++.|.+.. .|... .+.+|++|.|.+|.+. ..|..+..+++|+.|+++.|.
T Consensus 50 l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 50 LDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eeccccccc-cCCchhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhc
Confidence 666666555 455566666666666666663322 33333 5666677777766665 677777777888888888887
Q ss_pred CcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCC
Q 044830 254 FDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH 333 (801)
Q Consensus 254 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~ 333 (801)
+. .+|..+..++.++.+..++|..... ++... ++.+++..|.+.+.++..+..++. .|++.+|.+. ....
T Consensus 126 f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dl 195 (1081)
T KOG0618|consen 126 FG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDL 195 (1081)
T ss_pred cC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhh
Confidence 76 5677777777777777777722212 22222 677777777777777766666655 6777777765 2222
Q ss_pred CCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc
Q 044830 334 ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL 413 (801)
Q Consensus 334 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 413 (801)
..+.+|+.+....|++....- ..++|+.|+.++|.++...+.. .
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~-------~g~~l~~L~a~~n~l~~~~~~p-----------------------------~ 239 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEI-------SGPSLTALYADHNPLTTLDVHP-----------------------------V 239 (1081)
T ss_pred hhccchhhhhhhhcccceEEe-------cCcchheeeeccCcceeecccc-----------------------------c
Confidence 256666666666666542111 1356666666666655211111 1
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+.+++++++++|+++ .+|++++.+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. -+|.....+++|+.|+
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 334555555555555 23455555555555555555554 34444444555555555555555 3344444455555555
Q ss_pred CCCCcCCCCCCc-cccCCCC-CcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEcc
Q 044830 494 LNDNELEGKLPP-SLANCGD-LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571 (801)
Q Consensus 494 L~~n~l~~~~~~-~l~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs 571 (801)
|..|++. ..|+ .+.-... |..|+.+.|++.......-...+.|+.|++.+|.+++.....+ .++++|+.|+|+
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l----~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL----VNFKHLKVLHLS 391 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh----ccccceeeeeec
Confidence 5555554 2222 2222221 4444445555443332222234455555555555554433332 445555555555
Q ss_pred CCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccc
Q 044830 572 RNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVG 651 (801)
Q Consensus 572 ~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 651 (801)
+|++. .+|+..+.+|..|..+..+.+.+..++. -.-.+..|++|...+|++. ..| ++.
T Consensus 392 yNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~-------------------tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 392 YNRLN-SFPASKLRKLEELEELNLSGNKLTTLPD-------------------TVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccccc-cCCHHHHhchHHhHHHhcccchhhhhhH-------------------HHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 55553 4555555555544444333333222211 0011455677888888887 556 788
Q ss_pred ccccCceEeCcCcccccc-CCccccCCCCCCeEeCcCCc
Q 044830 652 KLSSLKLLNFSHNILRGE-IPVELTSLTALSVLNLSFNQ 689 (801)
Q Consensus 652 ~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~ 689 (801)
+++.|+.+|+|.|+|+.. +|..... ++|++||+++|.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 888888888888888743 4443333 788888888886
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.7e-34 Score=307.19 Aligned_cols=505 Identities=25% Similarity=0.283 Sum_probs=251.2
Q ss_pred EEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCC
Q 044830 45 LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124 (801)
Q Consensus 45 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~ 124 (801)
+|.+...+. .++. .+..-..++.|+++.|-+...+ -+++....+|+.||+++|.+. ..|..+..+.+|+.|+++.
T Consensus 3 vd~s~~~l~-~ip~--~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPE--QILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSR 77 (1081)
T ss_pred cccccccCc-ccch--hhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccch
Confidence 445555543 2332 3444455777788777665432 233455555788888877776 4566777777777777777
Q ss_pred CcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCC
Q 044830 125 DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDN 204 (801)
Q Consensus 125 n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 204 (801)
|.+ ...|....++.+ |+++.|.+|.+. ..|..+..+++|+.|++++|
T Consensus 78 n~i------~~vp~s~~~~~~--------------------------l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 78 NYI------RSVPSSCSNMRN--------------------------LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred hhH------hhCchhhhhhhc--------------------------chhheeccchhh-cCchhHHhhhcccccccchh
Confidence 731 122233444444 444555444444 34555555555555555555
Q ss_pred CCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccC
Q 044830 205 GLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFP 283 (801)
Q Consensus 205 ~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 283 (801)
.. +.+|..+ .++.++.+..++|..... ++... ++.+++..|.+.+.++..+..++. .|+|.+|.+. .
T Consensus 125 ~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~-- 192 (1081)
T KOG0618|consen 125 HF--GPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V-- 192 (1081)
T ss_pred cc--CCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--
Confidence 21 1223222 444455555555511111 11111 556666666666555555555554 5666666655 1
Q ss_pred ccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCC
Q 044830 284 DVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTS 363 (801)
Q Consensus 284 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~ 363 (801)
..+..+.+|+.+....|++.... -..++|+.|+.++|.++ .........+|++++++.|+++ .+|+|+.. +
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~---~ 263 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-NLPEWIGA---C 263 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eeccccccccceeeecchhhhh-cchHHHHh---c
Confidence 23455666666666666655321 13467777777777776 3223334456777777777777 56677776 7
Q ss_pred CCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCE
Q 044830 364 ENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY 443 (801)
Q Consensus 364 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 443 (801)
.+|+.++..+|+++. +|... .. ..+|+.|.+..|++. .+|.....+++|++
T Consensus 264 ~nle~l~~n~N~l~~-lp~ri-~~--------------------------~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 264 ANLEALNANHNRLVA-LPLRI-SR--------------------------ITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred ccceEecccchhHHh-hHHHH-hh--------------------------hhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 778888888877742 22211 11 123444444444443 23333344444444
Q ss_pred EECcCCCCcccCCccccCCC-CCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCc
Q 044830 444 LNLSNNSLSGMIPQCLANFD-SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNK 522 (801)
Q Consensus 444 L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 522 (801)
|+|..|++....+..+.... +|..|+.+.|++.......=...+.|+.|.+.+|.++...-+.+.+..+|+.|+|++|+
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 44444444422222222221 13444444444432111111123344444444444444433444444444455555544
Q ss_pred CCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccc
Q 044830 523 INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDY 602 (801)
Q Consensus 523 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~ 602 (801)
+.......+.++..|++|+|++|+++. +|.....++.|++|-..+|++. ..|..
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~-~fPe~-------------------- 448 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLL-SFPEL-------------------- 448 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCcee-echhh--------------------
Confidence 444333444444444444444444431 1112234444444444444443 22310
Q ss_pred cccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeee-ccccccccccCceEeCcCccccccCCccccCCCCCC
Q 044830 603 MNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGM-IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALS 681 (801)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 681 (801)
..++.|+.+|+|+|.++.. +|..... ++|++|||++|.-...--..|..+..+.
T Consensus 449 ------------------------~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 449 ------------------------AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred ------------------------hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhh
Confidence 1134556666666666532 2322222 5677777777764333334455555555
Q ss_pred eEeCcCC
Q 044830 682 VLNLSFN 688 (801)
Q Consensus 682 ~L~ls~N 688 (801)
..++.-|
T Consensus 504 ~~~i~~~ 510 (1081)
T KOG0618|consen 504 QMDITLN 510 (1081)
T ss_pred heecccC
Confidence 5655555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.2e-33 Score=286.68 Aligned_cols=385 Identities=26% Similarity=0.383 Sum_probs=234.7
Q ss_pred cCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830 64 LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL 143 (801)
Q Consensus 64 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 143 (801)
-++.++-.|+++|++++...|.....+++++.|.|....+. .+|..++.|.+|++|.+++|. +. .+-
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~--L~----~vh------ 71 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQ--LI----SVH------ 71 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhh--hH----hhh------
Confidence 34556667777777776666766777777777777776665 456667777777777766662 11 111
Q ss_pred CCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCE
Q 044830 144 TELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRI 222 (801)
Q Consensus 144 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~ 222 (801)
..+..++.|+.+.+.+|+.....+|..+ .+..|..
T Consensus 72 --------------------------------------------GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 72 --------------------------------------------GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred --------------------------------------------hhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 1122233333333333333333333332 4444444
Q ss_pred EEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeee
Q 044830 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302 (801)
Q Consensus 223 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 302 (801)
||||+|++. ..|..+..-+++-.|+|++|+|..+...-|.+++.|-.|||++|++. .+|..+..+..|+.|+|++|.+
T Consensus 108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 444444444 44555555555555555555555322233445555555555555554 3444455555555555555554
Q ss_pred eeeCCccCcCCCCCCEEEccccccc-ccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccc
Q 044830 303 TGQLPLSAFNLTQLSLLELSRNQFV-GQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI 380 (801)
Q Consensus 303 ~~~~p~~l~~l~~L~~L~l~~n~~~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 380 (801)
...--..+-.+++|++|.+++.+-+ ..+|..+ .+.+|..++++.|.+. .+|+.+.. +++|+.|+||+|+++...
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~---l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK---LRNLRRLNLSGNKITELN 261 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh---hhhhheeccCcCceeeee
Confidence 4222222223445555555554332 2334444 5556666666666665 66776666 677777777777765211
Q ss_pred cccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcc-cCCccc
Q 044830 381 FQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG-MIPQCL 459 (801)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~l 459 (801)
... ....+|++|+++.|+++ .+|++++.++.|+.|.+.+|+++- -+|..+
T Consensus 262 ~~~----------------------------~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 262 MTE----------------------------GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred ccH----------------------------HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 111 11357888888888888 788889999999999999988762 478888
Q ss_pred cCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCE
Q 044830 460 ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQV 539 (801)
Q Consensus 460 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 539 (801)
+++.+|+++..++|.+. ..|+.++.|..|+.|.|+.|.+. .+|..+.-++.|+.||+..|.-.-..|..-..-.+|..
T Consensus 313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence 88889999999988887 78888999999999999999887 67888888899999999988765555543333344444
Q ss_pred EEc
Q 044830 540 LVL 542 (801)
Q Consensus 540 L~L 542 (801)
-++
T Consensus 391 YNI 393 (1255)
T KOG0444|consen 391 YNI 393 (1255)
T ss_pred eec
Confidence 333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-31 Score=277.53 Aligned_cols=366 Identities=25% Similarity=0.309 Sum_probs=260.2
Q ss_pred cEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEE
Q 044830 41 HVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVAL 120 (801)
Q Consensus 41 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L 120 (801)
-|+.+|+++|.++|.-.| .+...++.++.|.|....+.. +|+.++.+.+|++|.+++|++.. +-..++.|+.|+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV 83 (1255)
T ss_pred eeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence 589999999999965443 278899999999999988844 89999999999999999999873 45678899999999
Q ss_pred eCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEe
Q 044830 121 DLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLT 200 (801)
Q Consensus 121 ~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 200 (801)
++..|. +. ...+|..+. .+ ..|..|+|++|++. +.|..+..-+++-+|+
T Consensus 84 ~~R~N~--LK--nsGiP~diF------------------------~l--~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 84 IVRDNN--LK--NSGIPTDIF------------------------RL--KDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhccc--cc--cCCCCchhc------------------------cc--ccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 999883 21 123333333 34 55666666666665 5666777777777888
Q ss_pred ccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCc-
Q 044830 201 LSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFS- 279 (801)
Q Consensus 201 Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~- 279 (801)
||+|++.+.+.+-+++++.|-.||||+|++. .+|..+..+.+|++|+|++|.+...--..+-.++.|++|.+++.+-+
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 8887666655555558888888888888887 67888888999999999999877554455666778888888887643
Q ss_pred cccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcC
Q 044830 280 GEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN 359 (801)
Q Consensus 280 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 359 (801)
..+|.++..+.+|..+|++.|++. .+|..+.++++|+.|+|++|.++..-...-...+|+.|+++.|+++ .+|+.+..
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK 289 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCK 289 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhh
Confidence 347778888888888888888887 6788888888888888888888743222223345555666666555 45554444
Q ss_pred CCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCC-CCccccccC
Q 044830 360 LSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTG-EFPSSICNL 438 (801)
Q Consensus 360 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l 438 (801)
++.|+.|.+.+|+ ++- -+|..++.+
T Consensus 290 ---L~kL~kLy~n~Nk---------------------------------------------------L~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 290 ---LTKLTKLYANNNK---------------------------------------------------LTFEGIPSGIGKL 315 (1255)
T ss_pred ---hHHHHHHHhccCc---------------------------------------------------ccccCCccchhhh
Confidence 4444444444444 331 256666666
Q ss_pred CCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC
Q 044830 439 STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500 (801)
Q Consensus 439 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 500 (801)
..|+++..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+.-++.|+.||+..|.--
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 66777777766665 66666666777777777777665 56666666677777777766543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.9e-22 Score=246.28 Aligned_cols=347 Identities=26% Similarity=0.288 Sum_probs=202.8
Q ss_pred chhhhccCCCCccEEEccCCc------CccCCCccCCCCC-CCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCccc
Q 044830 161 PSSLLNLSSASLISLSLGNCF------LRGEFPIDIFHFP-FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGK 233 (801)
Q Consensus 161 ~~~l~~l~~~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 233 (801)
+..|..+ .+|+.|.+..+. +...+|..+..++ +|+.|.+.++.. ..+|..+.+.+|++|+++++.+. .
T Consensus 551 ~~aF~~m--~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 551 ENAFKGM--RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNFRPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred HHHHhcC--ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcCCccCCcEEECcCcccc-c
Confidence 3445555 555655554332 1222344444443 366666655522 23444445555666666666554 3
Q ss_pred CcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCC
Q 044830 234 IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNL 313 (801)
Q Consensus 234 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 313 (801)
++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 455555566666666665544334443 5555666666666655444555555666666666666554333444433 45
Q ss_pred CCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccc
Q 044830 314 TQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS 393 (801)
Q Consensus 314 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 393 (801)
++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++.... +....
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~----~l~~L~~L~l~~~~~~~-l~~~~--------- 766 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL----RLENLDELILCEMKSEK-LWERV--------- 766 (1153)
T ss_pred CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc----cccccccccccccchhh-ccccc---------
Confidence 55666666555443333322 234555555555543 344332 13445555544432110 00000
Q ss_pred eeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830 394 VELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473 (801)
Q Consensus 394 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 473 (801)
..+.......+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus 767 ----------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 767 ----------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred ----------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 00011111224678888888887777788888888899999998886555677655 6788888998887
Q ss_pred cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCc
Q 044830 474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNS 546 (801)
Q Consensus 474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 546 (801)
.....+|.. .++|++|+|++|.++ .+|.++..+++|+.|++++|+-...+|.....+++|+.+++++|.
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 655555543 357888888888887 578888888888888888865555566677788888888888874
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.5e-22 Score=242.28 Aligned_cols=270 Identities=21% Similarity=0.256 Sum_probs=139.6
Q ss_pred ccccCCCCCCEEEcccccC------cccCcccccCCC-CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCc
Q 044830 236 DTIGNLRDLKFLDLYVCYF------DGQVPASLSNLK-QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPL 308 (801)
Q Consensus 236 ~~l~~l~~L~~L~L~~n~l------~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 308 (801)
..|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..| ...+|++|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 4466667777776655432 223455555443 4666777666655 445555 3466677777766665 4555
Q ss_pred cCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCc
Q 044830 309 SAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPV 388 (801)
Q Consensus 309 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 388 (801)
.+..+++|+.|+++++...+.+|....+++|+.|++++|.....+|..+.. +++|+.|++++|.....+|...
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~---L~~L~~L~L~~c~~L~~Lp~~i---- 701 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY---LNKLEDLDMSRCENLEILPTGI---- 701 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc---cCCCCEEeCCCCCCcCccCCcC----
Confidence 556666677777766654445554445666666666666555556655554 5566666666554222222110
Q ss_pred ccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEE
Q 044830 389 ERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLL 468 (801)
Q Consensus 389 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 468 (801)
.+++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|++|
T Consensus 702 ------------------------~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L 752 (1153)
T PLN03210 702 ------------------------NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDEL 752 (1153)
T ss_pred ------------------------CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccc
Confidence 1345666666666544444432 345666777776665 344433 35566666
Q ss_pred eCCCCcccc-------cCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEE
Q 044830 469 DLRKNQFRG-------SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLV 541 (801)
Q Consensus 469 ~L~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 541 (801)
.+.++.... ..+..+...++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 665533210 011111223345555555554444445455555555555555443333333322 344444444
Q ss_pred ccCC
Q 044830 542 LRSN 545 (801)
Q Consensus 542 L~~N 545 (801)
+++|
T Consensus 832 Ls~c 835 (1153)
T PLN03210 832 LSGC 835 (1153)
T ss_pred CCCC
Confidence 4444
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=3.9e-25 Score=218.79 Aligned_cols=414 Identities=22% Similarity=0.180 Sum_probs=247.4
Q ss_pred CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCC-CCCccccCccccCCCCCcEeec
Q 044830 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLED-NQFSGEFPDVFGNLSKLTRISL 297 (801)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L 297 (801)
.-..++|..|+|+...+..|+.+++|+.|||++|.|+.+-|++|..+++|..|.+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456788888888877777899999999999999999988899999998888877776 8888777778899999999999
Q ss_pred cCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEE--EccCC
Q 044830 298 AHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVEL--DLSNN 374 (801)
Q Consensus 298 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L--~Ls~n 374 (801)
.-|++.......+..+++|..|.+.+|.+.......+ .+..++.+.+..|.+.. ..+|.++ ++..+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----------dCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----------DCNLPWLADDLAMN 216 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----------ccccchhhhHHhhc
Confidence 8888887777888888999999988888874444344 67778888877776431 1122221 11111
Q ss_pred CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc----cccccEEEecCCCCCCCCc-cccccCCCCCEEECcCC
Q 044830 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL----SSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNN 449 (801)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n 449 (801)
.+.- .+ .. -.....+.+.++..+.... ..++..-..+.+..-+..| ..|..+++|++|+|++|
T Consensus 217 ~iet---sg----ar-----c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 217 PIET---SG----AR-----CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred hhhc---cc----ce-----ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1100 00 00 0000001111111111100 0111111112222222333 24666777777777777
Q ss_pred CCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC-----
Q 044830 450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN----- 524 (801)
Q Consensus 450 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~----- 524 (801)
+++++-+.+|.+...+++|.|..|++.......|.++..|+.|+|++|+|+...|..|..+..|..|++-.|.+.
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 777777777777777777777777776665666777777777777777777667777777777777777666543
Q ss_pred CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCc---cCcHHHHhhhhhhhccCCCCCccc
Q 044830 525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTG---LLPARYFQSLKAMMHGDNDDIDLD 601 (801)
Q Consensus 525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~---~~p~~~~~~l~~l~~~~~~~~~~~ 601 (801)
.++.+|+. ++...|..+.+- -..++.++++++.+.. ..|++. ++. .-.
T Consensus 365 ~wl~~Wlr-----------~~~~~~~~~Cq~------p~~~~~~~~~dv~~~~~~c~~~ee~--~~~----------~s~ 415 (498)
T KOG4237|consen 365 AWLGEWLR-----------KKSVVGNPRCQS------PGFVRQIPISDVAFGDFRCGGPEEL--GCL----------TSS 415 (498)
T ss_pred HHHHHHHh-----------hCCCCCCCCCCC------CchhccccchhccccccccCCcccc--CCC----------CCC
Confidence 12222322 122222222221 2234555555554431 112110 000 000
Q ss_pred ccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCC
Q 044830 602 YMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALS 681 (801)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 681 (801)
..+..-........++.++...-..++....++|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|+++++|.
T Consensus 416 ~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~ 491 (498)
T KOG4237|consen 416 PCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLS 491 (498)
T ss_pred CCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhh
Confidence 000000000001111222222222233445678999999998 66766 77888 999999999988888899999999
Q ss_pred eEeCcCC
Q 044830 682 VLNLSFN 688 (801)
Q Consensus 682 ~L~ls~N 688 (801)
+|-||||
T Consensus 492 tlilsyn 498 (498)
T KOG4237|consen 492 TLILSYN 498 (498)
T ss_pred eeEEecC
Confidence 9999997
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=9.5e-24 Score=209.05 Aligned_cols=251 Identities=22% Similarity=0.200 Sum_probs=142.2
Q ss_pred CeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCC-CcCCCccccCchhHhhcCCCCCC
Q 044830 69 QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS-DIPRTKFEQHTFNNLAKNLTELR 147 (801)
Q Consensus 69 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~~l~~l~~L~ 147 (801)
..++|..|.|+.. .+..|+.+++||.||||+|.|+.+-|.+|.++..|..|-+-+ | .+. ..-...|+.+..|+
T Consensus 70 veirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N--kI~---~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 70 VEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN--KIT---DLPKGAFGGLSSLQ 143 (498)
T ss_pred eEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC--chh---hhhhhHhhhHHHHH
Confidence 4445555555443 334455555555555555555555555555555554443333 3 111 11113444555555
Q ss_pred EEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCc-------------------
Q 044830 148 YLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT------------------- 208 (801)
Q Consensus 148 ~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~------------------- 208 (801)
.|.+.-|.+.....+.|..+ +++..|.+..|.+...--..+..+..++.+.+..|....
T Consensus 144 rLllNan~i~Cir~~al~dL--~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDL--PSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHhcChhhhcchhHHHHHHh--hhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 55555555555555555555 555555555555543322344555555555554442100
Q ss_pred ---------------cCCCCC--C-CCCCCCEEEccCccCcccCc-ccccCCCCCCEEEcccccCcccCcccccCCCCCC
Q 044830 209 ---------------GNLPTS--N-WSSPLRILDLSITKFSGKIP-DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLT 269 (801)
Q Consensus 209 ---------------~~~~~~--~-~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 269 (801)
..+.+. . ....+..--.+.+...+..| ..|.++++|+.|+|++|+++++.+.+|..+..++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 000000 0 01111111112222223334 3477888888888888888888888888888888
Q ss_pred EEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccc
Q 044830 270 VLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327 (801)
Q Consensus 270 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 327 (801)
+|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 8888888887666677888888888888888888777878888888888888777664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.2e-20 Score=213.48 Aligned_cols=263 Identities=26% Similarity=0.332 Sum_probs=157.7
Q ss_pred CCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccce
Q 044830 315 QLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394 (801)
Q Consensus 315 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 394 (801)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~-~~L~~L~L~~N~Lt-~LP~l------p~~Lk~LdLs~N~Lt----------------- 255 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-SLPAL------PPELRTLEVSGNQLT----------------- 255 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh-cCCCEEEccCCcCC-CCCCC------CCCCcEEEecCCccC-----------------
Confidence 3455666666666 3443331 35666666666655 24431 345555555555554
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 474 (801)
.++. .+++|+.|++++|.++ .+|.. ..+|+.|++++|+++. +|.. .++|+.|++++|+
T Consensus 256 -------------sLP~-lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~ 313 (788)
T PRK15387 256 -------------SLPV-LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ 313 (788)
T ss_pred -------------cccC-cccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCc
Confidence 3321 2345666666666655 23332 2346666666666663 3331 3456777777776
Q ss_pred ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554 (801)
Q Consensus 475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 554 (801)
+++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++++. |.. .++|+.|++++|++.+ +|.
T Consensus 314 L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~- 379 (788)
T PRK15387 314 LAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPA- 379 (788)
T ss_pred ccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Ccc-
Confidence 663 3332 2346666777777763 4431 23677777777777653 321 2466777777777763 221
Q ss_pred CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceE
Q 044830 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT 634 (801)
Q Consensus 555 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 634 (801)
...+|+.|++++|++++ +|.. .+.|+.
T Consensus 380 ------l~~~L~~LdLs~N~Lt~-LP~l----------------------------------------------~s~L~~ 406 (788)
T PRK15387 380 ------LPSGLKELIVSGNRLTS-LPVL----------------------------------------------PSELKE 406 (788)
T ss_pred ------cccccceEEecCCcccC-CCCc----------------------------------------------ccCCCE
Confidence 12467888888888773 4421 134678
Q ss_pred EEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830 635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG 697 (801)
Q Consensus 635 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 697 (801)
||+++|++++ +|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|+|.+|..
T Consensus 407 LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 407 LMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred EEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 8888888874 56432 46778888888887 67888888888888888888888887753
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2e-20 Score=211.51 Aligned_cols=268 Identities=25% Similarity=0.327 Sum_probs=180.5
Q ss_pred CCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEE
Q 044830 290 SKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVEL 369 (801)
Q Consensus 290 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L 369 (801)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lt-sLP~l------p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLT-SLPVL------PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccC-cccCc------cccccee
Confidence 44678999999998 6787665 489999999999985 443 3578999999999998 45642 4578888
Q ss_pred EccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCC
Q 044830 370 DLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN 449 (801)
Q Consensus 370 ~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 449 (801)
++++|.++. +|.. +.+|+.|++++|+++. +|. ..++|+.|++++|
T Consensus 268 ~Ls~N~L~~-Lp~l------------------------------p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N 312 (788)
T PRK15387 268 SIFSNPLTH-LPAL------------------------------PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDN 312 (788)
T ss_pred eccCCchhh-hhhc------------------------------hhhcCEEECcCCcccc-ccc---cccccceeECCCC
Confidence 888888762 2221 1345555555555552 332 1245666666666
Q ss_pred CCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcch
Q 044830 450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPY 529 (801)
Q Consensus 450 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 529 (801)
++++ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|+|++|++++ +|.. ..+|+.|++++|++.+ +|.
T Consensus 313 ~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~ 379 (788)
T PRK15387 313 QLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA 379 (788)
T ss_pred cccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccc
Confidence 6653 2321 1245566666666653 3421 1356777777777763 3432 2456667777777764 343
Q ss_pred hccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCC
Q 044830 530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYD 609 (801)
Q Consensus 530 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 609 (801)
. ..+|+.|++++|++.+ +|. ..++|+.|++++|++++ +|..
T Consensus 380 l---~~~L~~LdLs~N~Lt~-LP~-------l~s~L~~LdLS~N~Lss-IP~l--------------------------- 420 (788)
T PRK15387 380 L---PSGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLTS-LPML--------------------------- 420 (788)
T ss_pred c---ccccceEEecCCcccC-CCC-------cccCCCEEEccCCcCCC-CCcc---------------------------
Confidence 2 2467788888887774 221 13578899999999874 5631
Q ss_pred ceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCC
Q 044830 610 QYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSL 677 (801)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 677 (801)
+..|+.|++++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..+
T Consensus 421 -------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 -------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 123567899999998 689999999999999999999999888877544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.6e-18 Score=197.76 Aligned_cols=223 Identities=27% Similarity=0.436 Sum_probs=107.9
Q ss_pred eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830 397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476 (801)
Q Consensus 397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 476 (801)
+.|++++|.++.++....++|+.|++++|+++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++
T Consensus 202 ~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 202 TTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 33333333333333333344555555555554 2333322 24555555555554 3343332 34555555555555
Q ss_pred ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCC
Q 044830 477 GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP 556 (801)
Q Consensus 477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 556 (801)
.+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|++... |..+ .++|+.|++++|.+++ +|..+
T Consensus 276 -~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l- 344 (754)
T PRK15370 276 -CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASL- 344 (754)
T ss_pred -ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhh-
Confidence 3343332 355555555555552 333221 3455556666655432 2221 2455666666665553 22222
Q ss_pred CCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEE
Q 044830 557 SIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTID 636 (801)
Q Consensus 557 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 636 (801)
.++|+.|++++|+++ .+|..+ .+.|+.||
T Consensus 345 -----~~sL~~L~Ls~N~L~-~LP~~l---------------------------------------------p~~L~~Ld 373 (754)
T PRK15370 345 -----PPELQVLDVSKNQIT-VLPETL---------------------------------------------PPTITTLD 373 (754)
T ss_pred -----cCcccEEECCCCCCC-cCChhh---------------------------------------------cCCcCEEE
Confidence 245666666666665 344221 12355666
Q ss_pred ccCCeeeeeccccccccccCceEeCcCccccccCCcc----ccCCCCCCeEeCcCCcce
Q 044830 637 LSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVE----LTSLTALSVLNLSFNQLV 691 (801)
Q Consensus 637 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~----l~~l~~L~~L~ls~N~l~ 691 (801)
|++|+++ .+|..+. .+|+.|++++|++. .+|.. ++.++.+..+++.+|+++
T Consensus 374 Ls~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 374 VSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6666666 3344333 25666666666665 33433 233456666666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.4e-18 Score=196.26 Aligned_cols=97 Identities=23% Similarity=0.309 Sum_probs=50.3
Q ss_pred CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccC
Q 044830 267 QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGG 346 (801)
Q Consensus 267 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~ 346 (801)
+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|.++. +|..+ ...|+.|++++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l-~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL-PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhh-hccccEEECcC
Confidence 4566777777666 3454332 45667777777666 3444332 466666666666552 23221 12455555555
Q ss_pred CcCCcccchhhcCCCCCCCccEEEccCCCcc
Q 044830 347 NFLDGRIPSWLFNLSTSENLVELDLSNNKLT 377 (801)
Q Consensus 347 n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 377 (801)
|.+. .+|..+. .+|+.|++++|+++
T Consensus 251 N~L~-~LP~~l~-----s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 251 NRIT-ELPERLP-----SALQSLDLFHNKIS 275 (754)
T ss_pred CccC-cCChhHh-----CCCCEEECcCCccC
Confidence 5554 3444332 23444555444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=4.5e-19 Score=188.69 Aligned_cols=220 Identities=22% Similarity=0.219 Sum_probs=139.1
Q ss_pred cccccCCCCCEEECcCCCCcccCCccccCCCC---CCEEeCCCCcccc----cCCccccCC-CCccEEECCCCcCCCC--
Q 044830 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDS---LSLLDLRKNQFRG----SIPQIFSKC-YDLVALNLNDNELEGK-- 502 (801)
Q Consensus 433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~-- 502 (801)
..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 44555667777777777666444444444443 7777777776652 222334445 6777777777777632
Q ss_pred --CCccccCCCCCcEEeCCCCcCCCC----cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830 503 --LPPSLANCGDLEVLDVGNNKINDA----FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT 576 (801)
Q Consensus 503 --~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 576 (801)
++..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+.....+...+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 233456667788888888877642 23334455688888888887765433333333466788999999998887
Q ss_pred ccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeee----eccccccc
Q 044830 577 GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG----MIPKEVGK 652 (801)
Q Consensus 577 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~~p~~l~~ 652 (801)
+.....+...+. ...+.|+.|++++|.++. .+...+..
T Consensus 235 ~~~~~~l~~~~~--------------------------------------~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 276 (319)
T cd00116 235 DAGAAALASALL--------------------------------------SPNISLLTLSLSCNDITDDGAKDLAEVLAE 276 (319)
T ss_pred hHHHHHHHHHHh--------------------------------------ccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence 533322221111 012467889999998862 24455666
Q ss_pred cccCceEeCcCcccccc----CCccccCC-CCCCeEeCcCCcc
Q 044830 653 LSSLKLLNFSHNILRGE----IPVELTSL-TALSVLNLSFNQL 690 (801)
Q Consensus 653 l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l 690 (801)
+++|+.+++++|.++.. +...+... +.|+++++.+|++
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 78899999999998854 44455555 7888888888864
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.6e-18 Score=180.96 Aligned_cols=240 Identities=22% Similarity=0.223 Sum_probs=171.7
Q ss_pred cccccEEEecCCCCCCC----CccccccCCCCCEEECcCCCCcc------cCCccccCCCCCCEEeCCCCcccccCCccc
Q 044830 414 SSRIRFLSVSDNKLTGE----FPSSICNLSTIEYLNLSNNSLSG------MIPQCLANFDSLSLLDLRKNQFRGSIPQIF 483 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 483 (801)
...|+.++++++.+++. ++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 35588888888887542 44556677789999999988762 234566778899999999999886666666
Q ss_pred cCCCC---ccEEECCCCcCCC----CCCccccCC-CCCcEEeCCCCcCCCC----cchhccCCCCCCEEEccCCcCcccC
Q 044830 484 SKCYD---LVALNLNDNELEG----KLPPSLANC-GDLEVLDVGNNKINDA----FPYWTATLPRLQVLVLRSNSFHGPI 551 (801)
Q Consensus 484 ~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~ 551 (801)
..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 55555 9999999999873 233345566 8899999999998743 3445667788999999999887533
Q ss_pred CCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhccc
Q 044830 552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNI 631 (801)
Q Consensus 552 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 631 (801)
...++..+..+++|+.|++++|.+++.....+...+ ..++.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~---------------------------------------~~~~~ 222 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL---------------------------------------ASLKS 222 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh---------------------------------------cccCC
Confidence 222222234567999999999988754332221111 12467
Q ss_pred ceEEEccCCeeeeeccccccc-----cccCceEeCcCcccc----ccCCccccCCCCCCeEeCcCCccee
Q 044830 632 FTTIDLSNNRFEGMIPKEVGK-----LSSLKLLNFSHNILR----GEIPVELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 632 L~~LdLs~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~ls~N~l~g 692 (801)
|+.||+++|.+++.....+.. .+.|+.|++++|.++ ..++..+..+++|+++++++|+++.
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 899999999998643333322 379999999999997 2345567777899999999999874
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4e-17 Score=143.75 Aligned_cols=165 Identities=29% Similarity=0.464 Sum_probs=95.8
Q ss_pred ccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhh
Q 044830 61 TLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLA 140 (801)
Q Consensus 61 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l 140 (801)
.+.++.+++.|.||+|+++. +|..++.+.+|+.|++++|+|. .+|.+++.+++|+.|+++-|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn--------------- 89 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN--------------- 89 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh---------------
Confidence 45566667777777777654 4455677777777777777766 45666666666666666544
Q ss_pred cCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCC
Q 044830 141 KNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSP 219 (801)
Q Consensus 141 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~ 219 (801)
.+. ..|.+|+.++.|+.||+++|......+|.-+ .++.
T Consensus 90 ----------------------------------------rl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 90 ----------------------------------------RLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred ----------------------------------------hhh-cCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence 111 4567788888888888888744443344333 4444
Q ss_pred CCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccC
Q 044830 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH 299 (801)
Q Consensus 220 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 299 (801)
|+.|+|+.|.+. .+|.. ++++++|+.|.+..|.+. .+|..++.+.+|++|.+.+
T Consensus 129 lralyl~dndfe-~lp~d------------------------vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPD------------------------VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred HHHHHhcCCCcc-cCChh------------------------hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 445555555444 34444 444455555555544444 3455555555555555555
Q ss_pred eeeeeeCCccCc
Q 044830 300 LNFTGQLPLSAF 311 (801)
Q Consensus 300 n~l~~~~p~~l~ 311 (801)
|.++ .+|..++
T Consensus 183 nrl~-vlppel~ 193 (264)
T KOG0617|consen 183 NRLT-VLPPELA 193 (264)
T ss_pred ceee-ecChhhh
Confidence 5555 4444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=140.44 Aligned_cols=159 Identities=32% Similarity=0.600 Sum_probs=115.6
Q ss_pred CCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCC
Q 044830 486 CYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL 565 (801)
Q Consensus 486 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L 565 (801)
+...+.|.|++|+++ .+|..++.+.+|+.|++++|++.+ .|..++.+++|+.|+++-|++. .+|..++.+|.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-----~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-----ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-----cCccccCCCchh
Confidence 445555666666665 445556666666666666666633 4555666677777777766665 233445888888
Q ss_pred cEEEccCCcCCc-cCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeee
Q 044830 566 RIIDISRNGFTG-LLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG 644 (801)
Q Consensus 566 ~~LdLs~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 644 (801)
+.|||++|++.. .+|..+|. +..|+.|+|+.|.+.
T Consensus 105 evldltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe- 140 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE- 140 (264)
T ss_pred hhhhccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-
Confidence 888888888863 34443321 345677899999997
Q ss_pred eccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830 645 MIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 645 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (801)
.+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|+++-.-|.
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 78889999999999999999998 7899999999999999999999855444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=6.5e-14 Score=159.92 Aligned_cols=118 Identities=32% Similarity=0.571 Sum_probs=101.0
Q ss_pred CCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeee
Q 044830 564 ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFE 643 (801)
Q Consensus 564 ~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 643 (801)
.++.|+|++|.+.|.+|..+ .. ++.|+.|+|++|.++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~------------------------------------------L~~L~~L~Ls~N~l~ 455 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SK------------------------------------------LRHLQSINLSGNSIR 455 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hC------------------------------------------CCCCCEEECCCCccc
Confidence 47889999999999999753 22 456899999999999
Q ss_pred eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCC--CCCcCcCcCCCCCCCCCCCCCC
Q 044830 644 GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQ--FDSFQNDSFIGNLGLCGFALTQ 721 (801)
Q Consensus 644 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~--~~~~~~~~~~gn~~lcg~~l~~ 721 (801)
|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|.... +.......+.||+++||.|...
T Consensus 456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~ 535 (623)
T PLN03150 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 535 (623)
T ss_pred CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999997532 2233455789999999987555
Q ss_pred CCC
Q 044830 722 QCS 724 (801)
Q Consensus 722 ~c~ 724 (801)
.|.
T Consensus 536 ~C~ 538 (623)
T PLN03150 536 ACG 538 (623)
T ss_pred CCc
Confidence 664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=4.8e-12 Score=144.63 Aligned_cols=103 Identities=32% Similarity=0.612 Sum_probs=85.5
Q ss_pred CCCCCCCCCc----ccceeEeCC--CC--CcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCC
Q 044830 19 KSWNKDGDCC----SWDGIICDE--MT--GHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQF 90 (801)
Q Consensus 19 ~~w~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l 90 (801)
.+|+ +..|| .|.||.|.. .+ .+|+.|+|+++.+.|.+++ .+..+++|+.|+|++|.+.+. +|..++.+
T Consensus 390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l 465 (623)
T PLN03150 390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSI 465 (623)
T ss_pred CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCC
Confidence 4896 44453 799999953 22 2599999999999998888 888999999999999988876 78778889
Q ss_pred CCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCC
Q 044830 91 TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSD 125 (801)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n 125 (801)
++|++|+|++|.+++.+|..++++++|++|+|++|
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 99999999999998888888888888888888877
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=8.2e-13 Score=137.99 Aligned_cols=172 Identities=29% Similarity=0.507 Sum_probs=99.8
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
.-...+++.|++. ++|..++.+..|+.+.+..|.+. .+|.++.++..|++++|+.|+++ ..|..++.++ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3345566666665 45555666666666666666665 55556666666666666666665 4454444443 5566666
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|+++ .+|..++....|..||.+.|.+.. +|..+ +.+.+|+.|.+..|++
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql----------------------------~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQL----------------------------GYLTSLRDLNVRRNHL 201 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhh-chHHh----------------------------hhHHHHHHHHHhhhhh
Confidence 66655 445555555555555555555532 23333 4455555555555555
Q ss_pred CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830 576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655 (801)
Q Consensus 576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 655 (801)
. .+|.+.. .| .|..||+|+|+++ .||-+|.+|+.
T Consensus 202 ~-~lp~El~-~L-------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~ 235 (722)
T KOG0532|consen 202 E-DLPEELC-SL-------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRH 235 (722)
T ss_pred h-hCCHHHh-CC-------------------------------------------ceeeeecccCcee-ecchhhhhhhh
Confidence 4 3333321 11 2567777777777 67777777777
Q ss_pred CceEeCcCcccc
Q 044830 656 LKLLNFSHNILR 667 (801)
Q Consensus 656 L~~L~Ls~N~l~ 667 (801)
|++|-|.+|.+.
T Consensus 236 Lq~l~LenNPLq 247 (722)
T KOG0532|consen 236 LQVLQLENNPLQ 247 (722)
T ss_pred heeeeeccCCCC
Confidence 777777777766
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=1.8e-11 Score=121.17 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCCccEEECCCCcCCCC----CCccccCCCCCcEEeCCCCcCCCC----cchhccCCCCCCEEEccCCcCcccCCCCCCC
Q 044830 486 CYDLVALNLNDNELEGK----LPPSLANCGDLEVLDVGNNKINDA----FPYWTATLPRLQVLVLRSNSFHGPIYNNVPS 557 (801)
Q Consensus 486 l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 557 (801)
-+.|+.+...+|.+... +...|..++.|+.+.++.|.|... ....+..+++|+.|+|++|.|+-.....+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 34566666666665422 223445556666666666655321 2234556666666666666665332222222
Q ss_pred CCCCCCCCcEEEccCCcCCccCcHHH
Q 044830 558 IKRPFPELRIIDISRNGFTGLLPARY 583 (801)
Q Consensus 558 ~~~~l~~L~~LdLs~N~l~~~~p~~~ 583 (801)
.+..+++|+.|.+++|.+...-...+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhcccchheeecccccccccccHHHH
Confidence 33556677777777777765544443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.5e-11 Score=128.65 Aligned_cols=107 Identities=30% Similarity=0.432 Sum_probs=81.2
Q ss_pred CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 295 (801)
.+.--...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|++++|+.|+++ .+|..+..|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3444456777888877 67887888888888888888876 67777888888888888888887 5666666665 7888
Q ss_pred eccCeeeeeeCCccCcCCCCCCEEEccccccc
Q 044830 296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327 (801)
Q Consensus 296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 327 (801)
-+++|+++ .+|..++....|..||.+.|.+.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence 88888877 67777777777777777777766
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=4.7e-11 Score=118.21 Aligned_cols=228 Identities=25% Similarity=0.266 Sum_probs=112.6
Q ss_pred ccccCCCCCeeeCCCCCCCCC---cccccccCCCCCCEEeCCCCCCcc----cccc-------CCcCCCCCCEEeCCCCc
Q 044830 61 TLFLLHHLQKLNLACNDFNGT---KISSNFGQFTKLTHLNLSFSYFSG----IVPS-------QISRLSKLVALDLSSDI 126 (801)
Q Consensus 61 ~l~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~Ls~n~i~~----~~p~-------~l~~l~~L~~L~Ls~n~ 126 (801)
.+.....++.++||+|.|... .+.+.+.+.++|+..++|+- ++| .+|. .+-.+++|++||||.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 456677888888888887533 13455677778888888754 222 2332 23455677777777773
Q ss_pred CCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCC
Q 044830 127 PRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGL 206 (801)
Q Consensus 127 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~ 206 (801)
+... ....+-..++.+..|++|.|.+|.+....-..++.- |.+|. .+ .-...-+.|+++....|..
T Consensus 104 ~G~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a----l~~l~--~~-------kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 104 FGPK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA----LFELA--VN-------KKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCcc-chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH----HHHHH--HH-------hccCCCcceEEEEeecccc
Confidence 2221 112234456667777777777766544333332210 11111 00 1112234455555555533
Q ss_pred CccCCCCCC----CCCCCCEEEccCccCcc----cCcccccCCCCCCEEEcccccCccc----CcccccCCCCCCEEEcC
Q 044830 207 LTGNLPTSN----WSSPLRILDLSITKFSG----KIPDTIGNLRDLKFLDLYVCYFDGQ----VPASLSNLKQLTVLNLE 274 (801)
Q Consensus 207 ~~~~~~~~~----~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~ 274 (801)
..+....+. ..+.|+.+.++.|.|.. .+...+..+++|+.|||.+|.++.. +...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 322211111 23445555555554431 1223345566666666666655432 22334455556666666
Q ss_pred CCCCccccCccc-----cCCCCCcEeeccCeeee
Q 044830 275 DNQFSGEFPDVF-----GNLSKLTRISLAHLNFT 303 (801)
Q Consensus 275 ~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~ 303 (801)
+|.+.......| ...++|++|.+.+|.++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 665554333222 12344555555555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-10 Score=118.56 Aligned_cols=211 Identities=20% Similarity=0.237 Sum_probs=132.5
Q ss_pred cCCCCCCEEeCCCCCCccccc-cCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhh-
Q 044830 88 GQFTKLTHLNLSFSYFSGIVP-SQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLL- 165 (801)
Q Consensus 88 ~~l~~L~~L~Ls~n~i~~~~p-~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~- 165 (801)
.++++|+...|.++.+..... .....|++++.||||.|. +. .-..+......+++|+.|+++.|.+.....+...
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL--~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL--FH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh--HH-hHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 456677777777766552211 245567777777777762 11 1122334556777777777777766544332222
Q ss_pred ccCCCCccEEEccCCcCccC-CCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCc--ccccCCC
Q 044830 166 NLSSASLISLSLGNCFLRGE-FPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP--DTIGNLR 242 (801)
Q Consensus 166 ~l~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~l~ 242 (801)
.+ ++|+.|.|+.|.++.. +..-+..+|+|+.|+|.+|...........-+..|++|||++|.+.. .+ ...+.++
T Consensus 195 ~l--~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~ 271 (505)
T KOG3207|consen 195 LL--SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLP 271 (505)
T ss_pred hh--hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccccccc
Confidence 23 7888888888887732 11223568888888888884222211222256778889999888763 33 3467788
Q ss_pred CCCEEEcccccCccc-Cccc-----ccCCCCCCEEEcCCCCCccc-cCccccCCCCCcEeeccCeeeee
Q 044830 243 DLKFLDLYVCYFDGQ-VPAS-----LSNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAHLNFTG 304 (801)
Q Consensus 243 ~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~ 304 (801)
.|+.|+++.+.+... .|+. ...+++|++|++..|++..- .-..+..+++|+.|.+..|.+..
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888898888888653 2322 35678899999999988521 11345566778888877777763
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=8.4e-10 Score=120.87 Aligned_cols=65 Identities=37% Similarity=0.549 Sum_probs=47.9
Q ss_pred ccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830 630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG 697 (801)
Q Consensus 630 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 697 (801)
..+..+.+++|++.. ++..++.+++++.|++++|.++.. +. ++.+.+|+.|++++|.++...|..
T Consensus 232 ~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 232 KNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccccCCceeee-ccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 345566677777763 366778888888888888888843 33 788888888888888888777654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=2.8e-10 Score=106.18 Aligned_cols=106 Identities=31% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCCCCEEECcCCCCcccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccc-cCCCCCcE
Q 044830 438 LSTIEYLNLSNNSLSGMIPQCLA-NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL-ANCGDLEV 515 (801)
Q Consensus 438 l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~ 515 (801)
...+++|+|++|.|+.+ +.++ .+.+|+.|++++|.++.. +.+..++.|+.|++++|.|+.. ...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 33455566666655522 1233 345556666666655532 1344555566666666665532 2222 24555666
Q ss_pred EeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCc
Q 044830 516 LDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFH 548 (801)
Q Consensus 516 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~ 548 (801)
|++++|+|.+... ..+..+++|+.|+|.+|+++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666665544211 23444555555555555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.9e-10 Score=111.09 Aligned_cols=128 Identities=26% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEee
Q 044830 217 SSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRIS 296 (801)
Q Consensus 217 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 296 (801)
...|+++|||+|.|+ .+.++..-.+.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-..+-+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 345777777777776 5566666667777777777777633 33667777777777777766 3344445566777777
Q ss_pred ccCeeeeeeCCccCcCCCCCCEEEcccccccccCC--CCCCCCCCCEEEccCCcCC
Q 044830 297 LAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLP--CHASCLPLSHLKLGGNFLD 350 (801)
Q Consensus 297 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~L~~n~l~ 350 (801)
++.|.+... ..+..+-+|..||+++|++...-. ...+++.|+++.+.+|++.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777766522 335556666777777776653211 1114444555555555544
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=1.6e-09 Score=118.64 Aligned_cols=178 Identities=32% Similarity=0.474 Sum_probs=135.6
Q ss_pred eeeEEEecCCCCCCCCCCc--c-ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCC
Q 044830 395 ELRHLDVQSNLLQRLPFIL--S-SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR 471 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~--~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 471 (801)
.+..+++.+|.+..+++.. . ++|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|......+.|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 4555555666555555433 3 27889999999888 45566888999999999999998 445444477889999999
Q ss_pred CCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830 472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI 551 (801)
Q Consensus 472 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 551 (801)
+|++. .+|........|++|.+++|.+. ..+..+.++.++..+.+.+|++... +..+..+++++.|++++|.++...
T Consensus 195 ~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 195 GNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred CCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccccc
Confidence 99998 56665555667999999999644 4566788888888899999988553 567788888999999999987543
Q ss_pred CCCCCCCCCCCCCCcEEEccCCcCCccCcHHH
Q 044830 552 YNNVPSIKRPFPELRIIDISRNGFTGLLPARY 583 (801)
Q Consensus 552 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~ 583 (801)
. +..+.+++.||+++|.++...|...
T Consensus 272 ~------~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 272 S------LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred c------ccccCccCEEeccCccccccchhhh
Confidence 3 3678899999999999998777553
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-10 Score=117.27 Aligned_cols=88 Identities=22% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCCCCCEEEccCccCccc-CcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCcccc-CccccCCCCCc
Q 044830 216 WSSPLRILDLSITKFSGK-IPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF-PDVFGNLSKLT 293 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~ 293 (801)
.+++|+.|.++.|.++-. +-.....+++|+.|+|..|.....-.....-+..|++|+|++|++...- -...+.++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 345555555655555421 1112334556666666665422222222333455555566555554221 02234455555
Q ss_pred EeeccCeeee
Q 044830 294 RISLAHLNFT 303 (801)
Q Consensus 294 ~L~L~~n~l~ 303 (801)
.|+++.+.+.
T Consensus 275 ~Lnls~tgi~ 284 (505)
T KOG3207|consen 275 QLNLSSTGIA 284 (505)
T ss_pred hhhccccCcc
Confidence 5555555444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=9.1e-10 Score=102.81 Aligned_cols=124 Identities=24% Similarity=0.346 Sum_probs=47.7
Q ss_pred cccccEEEecCCCCCCCCccccc-cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccc-cCCCCccE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIF-SKCYDLVA 491 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 491 (801)
+.++++|+|.+|.|+.. +.++ .+.+|+.|++++|.|+.. + .+..++.|++|++++|.++.. .+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 44678888888888742 3454 477889999999998854 2 477788999999999999854 3334 45889999
Q ss_pred EECCCCcCCCCC-CccccCCCCCcEEeCCCCcCCCCcc---hhccCCCCCCEEEc
Q 044830 492 LNLNDNELEGKL-PPSLANCGDLEVLDVGNNKINDAFP---YWTATLPRLQVLVL 542 (801)
Q Consensus 492 L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L 542 (801)
|++++|+|...- -..+..+++|+.|++.+|++....- ..+..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999886432 2467788999999999999875422 13445666666654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=4.8e-10 Score=108.30 Aligned_cols=128 Identities=28% Similarity=0.327 Sum_probs=70.2
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
.|+++|+++|.|+ .+..+..-.|.++.|++|+|.+... +.+..+++|+.|||++|.++ .+..+-..+-+.+.|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4555555555555 3344444455566666666665522 22555566666666666555 233333345556666666
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCc-chhccCCCCCCEEEccCCcCcc
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAF-PYWTATLPRLQVLVLRSNSFHG 549 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~ 549 (801)
+|.+... ..+..+-+|..||+++|+|.... ...++++|.|+++.|.+|++.+
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 6665421 34445556666666666664322 2345667777777777777654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2.7e-09 Score=81.74 Aligned_cols=61 Identities=33% Similarity=0.484 Sum_probs=57.4
Q ss_pred ccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcc
Q 044830 630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQL 690 (801)
Q Consensus 630 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 690 (801)
+.|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3589999999999988888999999999999999999999899999999999999999986
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=5.9e-09 Score=121.82 Aligned_cols=128 Identities=27% Similarity=0.278 Sum_probs=71.7
Q ss_pred CCCCeeeCCCCC--CCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830 66 HHLQKLNLACND--FNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL 143 (801)
Q Consensus 66 ~~L~~L~Ls~n~--~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 143 (801)
+.|++|-+..|. +... ...+|..++.|++|||++|.--+.+|..++.|-+||+|++++.. + ..+|..++++
T Consensus 545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~--I----~~LP~~l~~L 617 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG--I----SHLPSGLGNL 617 (889)
T ss_pred CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC--c----cccchHHHHH
Confidence 356666666664 2221 22346666777777777665555666667777777777766652 1 3556666666
Q ss_pred CCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCc--cCCCccCCCCCCCCEEecc
Q 044830 144 TELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR--GEFPIDIFHFPFLRQLTLS 202 (801)
Q Consensus 144 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls 202 (801)
++|.+|++..+.....++.....+ .+|++|.+...... ...-..+.++.+|+.+...
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred Hhhheeccccccccccccchhhhc--ccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 666666666665544555555556 66666666554311 1112233444555555443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=2.8e-09 Score=116.81 Aligned_cols=127 Identities=25% Similarity=0.310 Sum_probs=57.8
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+..++.+.+..|.+.. +-..+..+.+|+.|++.+|.|... ...+..+++|++|++++|.|+...+ +..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 3444444455555442 112244455555555555555532 1113445555555555555543322 33344455555
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcc-hhccCCCCCCEEEccCCcC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFP-YWTATLPRLQVLVLRSNSF 547 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l 547 (801)
+++|.|+.. ..+..+..|+.+++++|++...-+ . ...+.+++.+++.+|.+
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 555555422 233334555555555555544333 1 23344444444444443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=1.1e-08 Score=119.63 Aligned_cols=106 Identities=35% Similarity=0.425 Sum_probs=61.6
Q ss_pred CCCCEEeccCCC--CCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEE
Q 044830 194 PFLRQLTLSDNG--LLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVL 271 (801)
Q Consensus 194 ~~L~~L~Ls~n~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 271 (801)
+.|++|-+..|. ...+....+..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..+.+++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666666653 12211111235666666666665544566666666666666666666665 566666666666666
Q ss_pred EcCCCCCccccCccccCCCCCcEeeccCe
Q 044830 272 NLEDNQFSGEFPDVFGNLSKLTRISLAHL 300 (801)
Q Consensus 272 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 300 (801)
++..+.....+|.....+++|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66666544444555555666666665543
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.2e-10 Score=109.54 Aligned_cols=183 Identities=22% Similarity=0.244 Sum_probs=109.9
Q ss_pred CCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCC
Q 044830 67 HLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL 146 (801)
Q Consensus 67 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L 146 (801)
.|++||||...|+...+...+..|.+|+.|.|.++++.+.+...+++-.+|+.||++.+. .+......-.+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s---G~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS---GFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc---ccchhHHHHHHHhhhhH
Confidence 488888888888766666667888888888888888888777788888888888888762 22333444566777777
Q ss_pred CEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCc--c-CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEE
Q 044830 147 RYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLR--G-EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRIL 223 (801)
Q Consensus 147 ~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L 223 (801)
..|+++.|.........+..--+++|+.|+|+++.-. . .+..-...+++|.+||||+|-
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v------------------ 324 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV------------------ 324 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc------------------
Confidence 7777777765443322222111255666666654311 0 011111244555555555441
Q ss_pred EccCccCcccCcccccCCCCCCEEEcccccCcccCccc---ccCCCCCCEEEcCCCC
Q 044830 224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPAS---LSNLKQLTVLNLEDNQ 277 (801)
Q Consensus 224 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~ 277 (801)
.++......|.+++.|++|.++.|.. .+|.. +...+.|.+|++.++-
T Consensus 325 -----~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 -----MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -----ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 22222333455666677777776653 23432 4556777777776653
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=2.4e-08 Score=76.43 Aligned_cols=59 Identities=36% Similarity=0.560 Sum_probs=28.8
Q ss_pred CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCc
Q 044830 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE 498 (801)
Q Consensus 440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 498 (801)
+|++|++++|+++...+..|.++++|++|++++|+++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555544444444455555555555555544444444445555555554444
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=7.2e-09 Score=113.60 Aligned_cols=241 Identities=23% Similarity=0.268 Sum_probs=139.3
Q ss_pred eeeEEEecCCCCCCCC--CCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC
Q 044830 395 ELRHLDVQSNLLQRLP--FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK 472 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 472 (801)
.++.+.+..|.+.... ...+.+++.+++.+|++... ...+..+++|++|++++|.|+...+ +..++.|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheecc
Confidence 4555556666666522 33467777777777777743 2225667777777777777775432 45566677777777
Q ss_pred CcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830 473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI 551 (801)
Q Consensus 473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 551 (801)
|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.... .+..+..+..+++..|++...-
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceecc
Confidence 777632 334557777777777777764433 2 456677777777777775432 2333444444566666665322
Q ss_pred CCCCCCCCCCCC--CCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhc
Q 044830 552 YNNVPSIKRPFP--ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL 629 (801)
Q Consensus 552 ~~~~~~~~~~l~--~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 629 (801)
+. ..+. +|+.+++++|++... +. .+ ..+
T Consensus 225 ~l------~~~~~~~L~~l~l~~n~i~~~-~~----~~---------------------------------------~~~ 254 (414)
T KOG0531|consen 225 GL------NELVMLHLRELYLSGNRISRS-PE----GL---------------------------------------ENL 254 (414)
T ss_pred Cc------ccchhHHHHHHhcccCccccc-cc----cc---------------------------------------ccc
Confidence 11 1122 266677777766521 10 00 012
Q ss_pred ccceEEEccCCeeeeeccccccccccCceEeCcCcccccc---CCcc-ccCCCCCCeEeCcCCcceecCC
Q 044830 630 NIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGE---IPVE-LTSLTALSVLNLSFNQLVGPIP 695 (801)
Q Consensus 630 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~iP 695 (801)
..+..||+++|++... ..+.....+..+.++.|.+... .... .+....+..+.+.+|+.....+
T Consensus 255 ~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 255 KNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 3456677777766543 2345556666666666665521 1111 4556667777777777666554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=3.2e-08 Score=106.96 Aligned_cols=124 Identities=25% Similarity=0.254 Sum_probs=55.2
Q ss_pred eeeEEEecCCCCCCCCCC--ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC
Q 044830 395 ELRHLDVQSNLLQRLPFI--LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK 472 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 472 (801)
.|...+++.|.+..+... .++.++.|+|++|+++.. +.+..++.|++|||++|.+....--...++. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 444455555554443322 245555555555555532 2444555555555555555422111122222 55555555
Q ss_pred CcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcC
Q 044830 473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKI 523 (801)
Q Consensus 473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i 523 (801)
|.++.. ..+.++.+|+.||+++|-+.+.-. ..++.+..|+.|+|.+|.+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 554421 223445555555555555443211 1123334445555555544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=5.8e-08 Score=104.99 Aligned_cols=180 Identities=23% Similarity=0.197 Sum_probs=111.8
Q ss_pred chhhhccCCCCccEEEccCCcCccCCCccCCCC-CCCCEEeccCCC-----CC---ccCCCCCCCCCCCCEEEccCccCc
Q 044830 161 PSSLLNLSSASLISLSLGNCFLRGEFPIDIFHF-PFLRQLTLSDNG-----LL---TGNLPTSNWSSPLRILDLSITKFS 231 (801)
Q Consensus 161 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~-----~~---~~~~~~~~~~~~L~~L~Ls~n~l~ 231 (801)
|-.+... ..|++|.|.+|.+.. ..++..+ ..|++|-..+.- ++ .+.+.....--.|...+.++|.+.
T Consensus 102 pi~ifpF--~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPF--RSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred Cceeccc--cceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 3344444 778888888877653 1222211 223333222110 00 122222222235677778888876
Q ss_pred ccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCc
Q 044830 232 GKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAF 311 (801)
Q Consensus 232 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 311 (801)
.+..++.-++.|+.|+|++|+++.. +.+..++.|++|||+.|.+.....-....+. |+.|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 5666677778888888888888754 3678888888888888888733222333444 88888888887733 3466
Q ss_pred CCCCCCEEEcccccccccCCCC--CCCCCCCEEEccCCcCC
Q 044830 312 NLTQLSLLELSRNQFVGQLPCH--ASCLPLSHLKLGGNFLD 350 (801)
Q Consensus 312 ~l~~L~~L~l~~n~~~~~~~~~--~~~~~L~~L~L~~n~l~ 350 (801)
++.+|+.||+++|-+.+.-.-. +.+..|+.|.|.+|++-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7888888888888776533222 25667888888888764
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=3.8e-07 Score=88.66 Aligned_cols=205 Identities=18% Similarity=0.138 Sum_probs=107.3
Q ss_pred EEEEcCCCCCC--cccCCCccc-ccCCCCCeeeCCCCCCCCC-cccccccCCCCCCEEeCCCCCCccccccCCcCCCCCC
Q 044830 43 IGLDLSSSWLL--GTLHPNSTL-FLLHHLQKLNLACNDFNGT-KISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLV 118 (801)
Q Consensus 43 ~~L~L~~~~l~--g~~~~~~~l-~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~ 118 (801)
.-+.+.++.+. |... .+ ...++++.+||.+|.|++= .+...+.++++|++|+|+.|.+...+-..=..+.+|+
T Consensus 48 ellvln~~~id~~gd~~---~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVM---LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred hhheecCCCCCcchhHH---HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34455565553 2221 23 3578899999999998752 2445577899999999999988744322114567888
Q ss_pred EEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCC--chhhhccCCCCccEEEccCCcCccC--CCccCCCCC
Q 044830 119 ALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVV--PSSLLNLSSASLISLSLGNCFLRGE--FPIDIFHFP 194 (801)
Q Consensus 119 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~~~L~~L~L~~n~l~~~--~~~~l~~l~ 194 (801)
+|-|.+.. ..+ ......+..+++++.|+++.|+..... .+..... ++.+++|.+..|...-- .-.--.-++
T Consensus 125 ~lVLNgT~--L~w--~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 125 VLVLNGTG--LSW--TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred EEEEcCCC--CCh--hhhhhhhhcchhhhhhhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 88887762 221 233455677888888888777432211 1111111 13444444444322100 000011245
Q ss_pred CCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccC-cccccCCCCCCEEEcccccCc
Q 044830 195 FLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKI-PDTIGNLRDLKFLDLYVCYFD 255 (801)
Q Consensus 195 ~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 255 (801)
++..+-+..|++.+..-.... .++.+-.|+|+.++|...- -+.+.+++.|..|.++++.+.
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 566666655544332222222 3444455555555554211 123444555555555555443
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=2.8e-07 Score=88.37 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=22.3
Q ss_pred cccCCCCCeeeCCCCCCCCC---cccccccCCCCCCEEeCCCC
Q 044830 62 LFLLHHLQKLNLACNDFNGT---KISSNFGQFTKLTHLNLSFS 101 (801)
Q Consensus 62 l~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~Ls~n 101 (801)
+..+..++.++||+|.|... .+...+.+-++|+..++|.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ 68 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA 68 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence 34456666677777766532 12334555566666666643
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.4e-08 Score=95.05 Aligned_cols=226 Identities=24% Similarity=0.230 Sum_probs=135.0
Q ss_pred CCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccC-CCccCCCC-CCCCEEeccCCCCCccCCCCCC-CCCCCC
Q 044830 145 ELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGE-FPIDIFHF-PFLRQLTLSDNGLLTGNLPTSN-WSSPLR 221 (801)
Q Consensus 145 ~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-~~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~ 221 (801)
.-+.+|+.+-++ .|..++.+.......+.+........ +.+.+.-+ ..|++||||...+....+.... .+++|+
T Consensus 137 lW~~lDl~~r~i---~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 137 LWQTLDLTGRNI---HPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred ceeeeccCCCcc---ChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 345566655443 45566665446677777765544433 22222222 3488888887633333232233 677888
Q ss_pred EEEccCccCcccCcccccCCCCCCEEEccccc-Cccc-CcccccCCCCCCEEEcCCCCCccccCccc-c-CCCCCcEeec
Q 044830 222 ILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY-FDGQ-VPASLSNLKQLTVLNLEDNQFSGEFPDVF-G-NLSKLTRISL 297 (801)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~-~l~~L~~L~L 297 (801)
.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. .---+.+++.|..|+++.|.+........ . --++|+.|++
T Consensus 214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl 293 (419)
T KOG2120|consen 214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL 293 (419)
T ss_pred hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence 88888888887777778888888888888764 2211 11225677888888888887653322111 1 1246777777
Q ss_pred cCeeee---eeCCccCcCCCCCCEEEccccccccc-CC-CCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEcc
Q 044830 298 AHLNFT---GQLPLSAFNLTQLSLLELSRNQFVGQ-LP-CHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLS 372 (801)
Q Consensus 298 ~~n~l~---~~~p~~l~~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls 372 (801)
+++.-. ..+..-...+++|.+||+++|..... .. ..+.++.|++|.++.|.. .+|+.+-.+...++|.+|++.
T Consensus 294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence 765311 01111223578888888887753321 11 122677788888887763 567777677777888888877
Q ss_pred CCC
Q 044830 373 NNK 375 (801)
Q Consensus 373 ~n~ 375 (801)
++-
T Consensus 372 g~v 374 (419)
T KOG2120|consen 372 GCV 374 (419)
T ss_pred ccc
Confidence 663
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=5.6e-07 Score=86.38 Aligned_cols=135 Identities=19% Similarity=0.108 Sum_probs=69.1
Q ss_pred CCCCEEeccCCCCCccCCCCCC----CCCCCCEEEccCccCccc-----CcccccCCCCCCEEEcccccCccc----Ccc
Q 044830 194 PFLRQLTLSDNGLLTGNLPTSN----WSSPLRILDLSITKFSGK-----IPDTIGNLRDLKFLDLYVCYFDGQ----VPA 260 (801)
Q Consensus 194 ~~L~~L~Ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~p~ 260 (801)
|.|++.....|+...++...+. .-..|+++.+..|.|.-. +...+..+++|+.|||..|.++.. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 4555555555544443322211 123566666666655311 111233456677777777766532 223
Q ss_pred cccCCCCCCEEEcCCCCCccccCccc------cCCCCCcEeeccCeeeeeeCCcc-----C--cCCCCCCEEEccccccc
Q 044830 261 SLSNLKQLTVLNLEDNQFSGEFPDVF------GNLSKLTRISLAHLNFTGQLPLS-----A--FNLTQLSLLELSRNQFV 327 (801)
Q Consensus 261 ~l~~l~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~L~~n~l~~~~p~~-----l--~~l~~L~~L~l~~n~~~ 327 (801)
.+...+.|+.|.+..|-++......+ ...++|+.|-..+|...+.+... + ..++-|..|.+.+|++.
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 34455667777777776654333221 12466677776666544322111 1 24566777777777765
Q ss_pred c
Q 044830 328 G 328 (801)
Q Consensus 328 ~ 328 (801)
.
T Consensus 317 E 317 (388)
T COG5238 317 E 317 (388)
T ss_pred h
Confidence 3
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=1.8e-07 Score=95.33 Aligned_cols=278 Identities=19% Similarity=0.149 Sum_probs=138.5
Q ss_pred CCCeeeCCCCC-CCCCcccccccCCCCCCEEeCCCCC-CccccccCC-cCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830 67 HLQKLNLACND-FNGTKISSNFGQFTKLTHLNLSFSY-FSGIVPSQI-SRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL 143 (801)
Q Consensus 67 ~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 143 (801)
.|+.|.++++. .....+...-.+++++++|++.++. +++..-..+ ..+++|++|++..|. .+....+......+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~---~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS---SITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc---hhHHHHHHHHHHhh
Confidence 45666666653 2222233344456666666666664 222211222 345666666666541 11122233344556
Q ss_pred CCCCEEeCCCcc-CCCCCch-hhhccCCCCccEEEccCCcCccC--CCccCCCCCCCCEEeccCCCCCccCCCCCC--CC
Q 044830 144 TELRYLLLDNVQ-MFSVVPS-SLLNLSSASLISLSLGNCFLRGE--FPIDIFHFPFLRQLTLSDNGLLTGNLPTSN--WS 217 (801)
Q Consensus 144 ~~L~~L~L~~~~-~~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~--~~ 217 (801)
++|++|+++.+. +++.... ...++ ..++.+.+.+|.-.+. +-..-..+..+..+++.+|...+..--... .+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~--~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGC--KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccc--hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 666666666663 2331111 12222 3344554444321100 000012334455555555533332211111 56
Q ss_pred CCCCEEEccCccCc-ccCccc-ccCCCCCCEEEcccccC-cccCcccc-cCCCCCCEEEcCCCCCccc--cCccccCCCC
Q 044830 218 SPLRILDLSITKFS-GKIPDT-IGNLRDLKFLDLYVCYF-DGQVPASL-SNLKQLTVLNLEDNQFSGE--FPDVFGNLSK 291 (801)
Q Consensus 218 ~~L~~L~Ls~n~l~-~~~~~~-l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~ 291 (801)
..|++|+.+++... ...-.. ..+..+|+.|-++.|+- +..--..+ .+.+.|+.+++..+..... +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 67777777765432 221122 23567888888887763 22111222 2567788888877754321 2222245678
Q ss_pred CcEeeccCeeeeeeC-----CccCcCCCCCCEEEcccccccccCCCCC--CCCCCCEEEccCCcC
Q 044830 292 LTRISLAHLNFTGQL-----PLSAFNLTQLSLLELSRNQFVGQLPCHA--SCLPLSHLKLGGNFL 349 (801)
Q Consensus 292 L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~L~~n~l 349 (801)
|+.+.++++...... ...-..+..|+.+.+++++.+..-.... .+++|+.+++.+++-
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 888888877643221 1122346778888888887654322222 778888888877653
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=4.5e-06 Score=81.42 Aligned_cols=209 Identities=19% Similarity=0.233 Sum_probs=109.8
Q ss_pred CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCcc
Q 044830 335 SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILS 414 (801)
Q Consensus 335 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 414 (801)
.++.++++||.+|.++. -.+...-+.++|.|+.|+++.|.+...|-... .+ .
T Consensus 69 ~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p--------------------------~ 120 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP--------------------------L 120 (418)
T ss_pred Hhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCc-cc--------------------------c
Confidence 45567777777777653 22222233457888888888888765443322 11 2
Q ss_pred ccccEEEecCCCCCCC-CccccccCCCCCEEECcCCCCccc--CCccccCC-CCCCEEeCCCCcccc--cCCccccCCCC
Q 044830 415 SRIRFLSVSDNKLTGE-FPSSICNLSTIEYLNLSNNSLSGM--IPQCLANF-DSLSLLDLRKNQFRG--SIPQIFSKCYD 488 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~~~l~~ 488 (801)
.+|+.|-|.+..+... ....+..+|.++.|.++.|..... ..++.... +.++.|.+..|.... ..-..-.-+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 3444444444444322 122334455566666666532211 11111111 133344443332210 00000112456
Q ss_pred ccEEECCCCcCCCC-CCccccCCCCCcEEeCCCCcCCCCc-chhccCCCCCCEEEccCCcCcccCCCCCC--CCCCCCCC
Q 044830 489 LVALNLNDNELEGK-LPPSLANCGDLEVLDVGNNKINDAF-PYWTATLPRLQVLVLRSNSFHGPIYNNVP--SIKRPFPE 564 (801)
Q Consensus 489 L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~l~~ 564 (801)
+..+.+..|.+... .-..+..++.+..|+|+.|+|..+. -..+.++++|..|.+++|++....-..-+ -.+..+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 77777778876532 2234555667778888888886543 34577888888899988887654433211 12356777
Q ss_pred CcEEEcc
Q 044830 565 LRIIDIS 571 (801)
Q Consensus 565 L~~LdLs 571 (801)
++.|+=+
T Consensus 281 v~vLNGs 287 (418)
T KOG2982|consen 281 VQVLNGS 287 (418)
T ss_pred eEEecCc
Confidence 7777654
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=1.6e-06 Score=74.63 Aligned_cols=64 Identities=28% Similarity=0.403 Sum_probs=44.0
Q ss_pred cceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830 631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG 697 (801)
Q Consensus 631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 697 (801)
.+++|+|++|+|+ .+|+++..+++|+.||++.|.+. ..|.-+..|.+|.+|+.-+|.+. +||..
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 4567777777776 56666777777777777777777 44555566777777777777654 55544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=1.5e-06 Score=74.84 Aligned_cols=107 Identities=22% Similarity=0.331 Sum_probs=65.1
Q ss_pred ccEEEecCCCCCCCCccc---cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 417 IRFLSVSDNKLTGEFPSS---ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 417 L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+..++|+.|++. .+++. +.....|+..+|++|.+....+..-..++.++.|++++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445566666554 22322 233445566677777776444444445556777777777776 5566677777777777
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDA 526 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 526 (801)
++.|.+. ..|..+..+.++-.|+..+|.+..+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 7777776 4455555566667777777766443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=2.4e-05 Score=54.59 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=22.0
Q ss_pred cceEEEccCCeeeeeccccccccccCceEeCcCcccc
Q 044830 631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR 667 (801)
Q Consensus 631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 667 (801)
.|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566677777666 34545666666666666666666
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00023 Score=75.17 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=46.1
Q ss_pred cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCC-cCCCCCCccccCCCCC
Q 044830 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN-ELEGKLPPSLANCGDL 513 (801)
Q Consensus 435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 513 (801)
+..+..++.|++++|.++ .+|. + -.+|++|.++++.--..+|..+. ++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 344677888888888776 4452 2 13688888877543345565442 46777777777 443 3443 45
Q ss_pred cEEeCCCCcC
Q 044830 514 EVLDVGNNKI 523 (801)
Q Consensus 514 ~~L~Ls~n~i 523 (801)
+.|+++.+..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 6666655543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=5.6e-05 Score=52.77 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=21.8
Q ss_pred CCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCcc
Q 044830 67 HLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSG 105 (801)
Q Consensus 67 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~ 105 (801)
+|++|++++|+|+. +|..++++++|++|++++|.|++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 56666666666653 44446666666666666666653
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=4.6e-05 Score=87.40 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=39.8
Q ss_pred CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCc-cCCCCCCCCCCCCEEEccCccCccc------CcccccCCC
Q 044830 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLT-GNLPTSNWSSPLRILDLSITKFSGK------IPDTIGNLR 242 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~------~~~~l~~l~ 242 (801)
++|..||+++++++.. .+++++++|+.|.+.+-.... ..+-..+.+++|+.||+|....... .-+.-..+|
T Consensus 173 pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp 250 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP 250 (699)
T ss_pred CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence 3444444444444322 334444444444444432221 1122223455555555554433211 112223477
Q ss_pred CCCEEEcccccCcccC
Q 044830 243 DLKFLDLYVCYFDGQV 258 (801)
Q Consensus 243 ~L~~L~L~~n~l~~~~ 258 (801)
+|+.||.+++.+....
T Consensus 251 eLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 251 ELRFLDCSGTDINEEI 266 (699)
T ss_pred cccEEecCCcchhHHH
Confidence 8888888888776543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00024 Score=65.90 Aligned_cols=106 Identities=26% Similarity=0.280 Sum_probs=49.2
Q ss_pred CCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccc--cCCCCCCCCCCCEEEcc
Q 044830 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG--QLPCHASCLPLSHLKLG 345 (801)
Q Consensus 268 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~L~ 345 (801)
...+||++|.+... ..|..+++|.+|.+.+|.|+.+-|.--.-+++|+.|.+.+|.+.. .+.....|+.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34445555544321 224445555555555555554333322234455555555555542 22223355566666666
Q ss_pred CCcCCcccchhhcCCCCCCCccEEEccCCC
Q 044830 346 GNFLDGRIPSWLFNLSTSENLVELDLSNNK 375 (801)
Q Consensus 346 ~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~ 375 (801)
+|+++..-.-...-+..+++|+.||+..-.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhh
Confidence 665543221111222236666666665543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00033 Score=65.08 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=26.5
Q ss_pred ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830 417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476 (801)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 476 (801)
...+||++|.+... ..|..++.|.+|.+.+|.|+.+-|.--..+++|+.|.|.+|++.
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 34445555544311 22344455555555555555444433333444555555555443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.00092 Score=70.66 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=9.6
Q ss_pred CCCccEEEccCCCcc
Q 044830 363 SENLVELDLSNNKLT 377 (801)
Q Consensus 363 ~~~L~~L~Ls~n~l~ 377 (801)
+.+++.|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 456667777766554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.0002 Score=82.22 Aligned_cols=87 Identities=28% Similarity=0.325 Sum_probs=51.6
Q ss_pred cCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCC
Q 044830 64 LLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNL 143 (801)
Q Consensus 64 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 143 (801)
.||+|+.|.+++-.+..........++++|+.||+|+++++.. ..+++|++|+.|.+.+ +.+....--..+.+|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn----Le~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN----LEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccC----CCCCchhhHHHHhcc
Confidence 4677777777776654443334455677777777777777644 5567777777776653 222222222345566
Q ss_pred CCCCEEeCCCccC
Q 044830 144 TELRYLLLDNVQM 156 (801)
Q Consensus 144 ~~L~~L~L~~~~~ 156 (801)
++|+.||+|....
T Consensus 220 ~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 220 KKLRVLDISRDKN 232 (699)
T ss_pred cCCCeeecccccc
Confidence 7777777665543
No 62
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.07 E-value=0.00012 Score=50.96 Aligned_cols=32 Identities=34% Similarity=0.729 Sum_probs=20.5
Q ss_pred ccccccccCCC---CCCCCCCCC--CCCcccceeEeC
Q 044830 5 ASSHCDAAVTY---PKTKSWNKD--GDCCSWDGIICD 36 (801)
Q Consensus 5 ~~~~~~~~~~~---~~l~~w~~~--~~~c~w~gv~c~ 36 (801)
|.+..|++... +.+.+|+.. .+||+|.||+|+
T Consensus 7 aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 7 ALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 34445666653 479999976 799999999996
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.01 E-value=4.2e-05 Score=78.50 Aligned_cols=282 Identities=21% Similarity=0.156 Sum_probs=157.7
Q ss_pred CcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCC-CCCCcccccccCCCCCCEEeCCCC-CCcccccc-CCcCCCC
Q 044830 40 GHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACND-FNGTKISSNFGQFTKLTHLNLSFS-YFSGIVPS-QISRLSK 116 (801)
Q Consensus 40 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~p~-~l~~l~~ 116 (801)
++.++++++|..-.|.-+-......++++++|++.++. ++....-..-..++.|++|+|..| .++...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 56788888887655543322245678999999999985 554433343457899999999995 45543333 3356899
Q ss_pred CCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccC--CCCccEEEccCCc-CccCCCcc-CCC
Q 044830 117 LVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLS--SASLISLSLGNCF-LRGEFPID-IFH 192 (801)
Q Consensus 117 L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~--~~~L~~L~L~~n~-l~~~~~~~-l~~ 192 (801)
|++|+++.+. .+....+......+..++.+.+.+|.-. ..+.+.... ...+.++++..|. ++++.-.. -..
T Consensus 218 L~~lNlSwc~---qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 218 LKYLNLSWCP---QISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHHhhhccCc---hhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 9999999882 2222344455666777777766665322 222222211 1345566655553 22221001 124
Q ss_pred CCCCCEEeccCCCCCccCCC-CCC-CCCCCCEEEccCcc-CcccCcccc-cCCCCCCEEEcccccCcc--cCcccccCCC
Q 044830 193 FPFLRQLTLSDNGLLTGNLP-TSN-WSSPLRILDLSITK-FSGKIPDTI-GNLRDLKFLDLYVCYFDG--QVPASLSNLK 266 (801)
Q Consensus 193 l~~L~~L~Ls~n~~~~~~~~-~~~-~~~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~ 266 (801)
+..|++|+.+++...+...- ... ...+|+.|-++.++ ++..-...+ .+++.|+.+++..+.... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 56677777776632211111 111 56677777777764 332211222 245677777777765431 1222223567
Q ss_pred CCCEEEcCCCCCcccc-----CccccCCCCCcEeeccCeeeee-eCCccCcCCCCCCEEEcccccc
Q 044830 267 QLTVLNLEDNQFSGEF-----PDVFGNLSKLTRISLAHLNFTG-QLPLSAFNLTQLSLLELSRNQF 326 (801)
Q Consensus 267 ~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~ 326 (801)
.|+++.+++|...... ...-..+..|+.+.++++.... ..-..+..+++|+.+++..++-
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 7777777776543111 1112345667777777776432 2223345667788877776653
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.00 E-value=0.0017 Score=58.28 Aligned_cols=100 Identities=18% Similarity=0.378 Sum_probs=33.9
Q ss_pred ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEEC
Q 044830 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 494 (801)
++|+.+.+.. .+...-...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3444444442 233222334444444555555443 3333333444444455555543 222223334444445555544
Q ss_pred CCCcCCCCCCccccCCCCCcEEeCC
Q 044830 495 NDNELEGKLPPSLANCGDLEVLDVG 519 (801)
Q Consensus 495 ~~n~l~~~~~~~l~~l~~L~~L~Ls 519 (801)
..+ +.......|.++ .|+.+.+.
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-T
T ss_pred Ccc-ccEEchhhhcCC-CceEEEEC
Confidence 433 222222334443 44444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.79 E-value=0.0026 Score=57.07 Aligned_cols=106 Identities=19% Similarity=0.334 Sum_probs=49.8
Q ss_pred cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512 (801)
Q Consensus 433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 512 (801)
..|.++++|+.+.+.. .+......+|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455666677777664 455455556666666777777664 5544455666666677777654 333233445556666
Q ss_pred CcEEeCCCCcCCCCcchhccCCCCCCEEEcc
Q 044830 513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLR 543 (801)
Q Consensus 513 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 543 (801)
|+.+++..+ +.......+.++ .|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 666666554 444444444444 55555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00053 Score=66.63 Aligned_cols=61 Identities=31% Similarity=0.405 Sum_probs=28.5
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCccEEECCCC--cCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830 462 FDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN--ELEGKLPPSLANCGDLEVLDVGNNKIN 524 (801)
Q Consensus 462 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 524 (801)
+..|+.|.+.+..++.. ..|..+++|+.|.++.| .+.+.++.....+++|++|++++|++.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444444444444311 22344455555555555 333334434444455555555555553
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0016 Score=63.33 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=55.2
Q ss_pred cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC--cccccCCccccCCCCccEEECCCCcCCCC-CCccccCCC
Q 044830 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN--QFRGSIPQIFSKCYDLVALNLNDNELEGK-LPPSLANCG 511 (801)
Q Consensus 435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~ 511 (801)
...+..|+.|.+.+..++.. ..|..+++|+.|.++.| ++.+.++.....+++|++|++++|++.-. .-..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 33455566666666666532 23556677888888888 55555555455568888888888887520 112244556
Q ss_pred CCcEEeCCCCcCCC
Q 044830 512 DLEVLDVGNNKIND 525 (801)
Q Consensus 512 ~L~~L~Ls~n~i~~ 525 (801)
+|..|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 67777777776544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.00034 Score=68.04 Aligned_cols=84 Identities=26% Similarity=0.271 Sum_probs=50.0
Q ss_pred ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccEEE
Q 044830 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALN 493 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 493 (801)
.+++.|++.++.+.++ .....++.|++|.|+-|+|+..-| +..|++|++|+|..|.|....- ..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3556677777766643 223457777777777777764433 5667777777777776652210 1244566666666
Q ss_pred CCCCcCCCC
Q 044830 494 LNDNELEGK 502 (801)
Q Consensus 494 L~~n~l~~~ 502 (801)
|..|.-.|.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 666655444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0003 Score=68.39 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCC-CccccCCCCCcEE
Q 044830 438 LSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL-PPSLANCGDLEVL 516 (801)
Q Consensus 438 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L 516 (801)
+.+.+.|++.+|.++++ .....++.|++|.|+-|+|+..-| |..|+.|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556667777766643 223456667777777776663322 455666666666666654211 0234455555555
Q ss_pred eCCCCcCCCCc
Q 044830 517 DVGNNKINDAF 527 (801)
Q Consensus 517 ~Ls~n~i~~~~ 527 (801)
.|..|...+..
T Consensus 94 WL~ENPCc~~a 104 (388)
T KOG2123|consen 94 WLDENPCCGEA 104 (388)
T ss_pred hhccCCccccc
Confidence 55555544433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.65 E-value=0.00086 Score=75.72 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=6.2
Q ss_pred cCCCCCCEEeCCC
Q 044830 112 SRLSKLVALDLSS 124 (801)
Q Consensus 112 ~~l~~L~~L~Ls~ 124 (801)
..+++|+.|+++.
T Consensus 211 ~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 211 LKCPNLEELDLSG 223 (482)
T ss_pred hhCchhheecccC
Confidence 3445555555543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.0088 Score=34.60 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=12.1
Q ss_pred ceEEEccCCeeeeeccccccc
Q 044830 632 FTTIDLSNNRFEGMIPKEVGK 652 (801)
Q Consensus 632 L~~LdLs~N~l~~~~p~~l~~ 652 (801)
|++|||++|+|+ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 55555544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.0058 Score=35.37 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=12.7
Q ss_pred cCceEeCcCccccccCCccccC
Q 044830 655 SLKLLNFSHNILRGEIPVELTS 676 (801)
Q Consensus 655 ~L~~L~Ls~N~l~~~ip~~l~~ 676 (801)
+|++|||++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 56655544
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.67 E-value=0.007 Score=68.32 Aligned_cols=238 Identities=21% Similarity=0.145 Sum_probs=122.4
Q ss_pred cCCCCCeeeCCCC-CCCCCcccccccCCCCCCEEeCCCC-CCcccc----ccCCcCCCCCCEEeCCCCcCCCccccCchh
Q 044830 64 LLHHLQKLNLACN-DFNGTKISSNFGQFTKLTHLNLSFS-YFSGIV----PSQISRLSKLVALDLSSDIPRTKFEQHTFN 137 (801)
Q Consensus 64 ~l~~L~~L~Ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~----p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~ 137 (801)
.++.|+.|.+.++ .+....+......+++|+.|+++++ ...... ......+++|+.|+++.+. . +.+..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~-isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG--L-VTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh--c-cCchhHH
Confidence 4788999999887 4444323345678899999999973 221111 1234557888899988772 1 2233444
Q ss_pred HhhcCCCCCCEEeCCCcc-CCCCCchhhhc-cCCCCccEEEccCCcCccC--CCccCCCCCCCCEEeccCCCCCccCCCC
Q 044830 138 NLAKNLTELRYLLLDNVQ-MFSVVPSSLLN-LSSASLISLSLGNCFLRGE--FPIDIFHFPFLRQLTLSDNGLLTGNLPT 213 (801)
Q Consensus 138 ~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~ 213 (801)
.....+++|+.|.+.++. ++...-..+.. + +.|++|+++.|..... +.....++++|+.|.+.....
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~--~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------- 333 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERC--PSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------- 333 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhc--CcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence 444457788888877666 44444333333 4 6678888777654311 111223455555554433311
Q ss_pred CCCCCCCCEEEccCccCc---ccCcccccCCCCCCEEEcccccCcccC-cccccCCCCCCEEEcCCCCCccccCccccCC
Q 044830 214 SNWSSPLRILDLSITKFS---GKIPDTIGNLRDLKFLDLYVCYFDGQV-PASLSNLKQLTVLNLEDNQFSGEFPDVFGNL 289 (801)
Q Consensus 214 ~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 289 (801)
+..++.+.+....-. .........+++++.+.+..+...... ...+..++.|+ ..+... ....
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~ 400 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRS 400 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccC
Confidence 233444444332221 122233556777777777777633222 13344455552 111111 1111
Q ss_pred CCCcEeeccCeeeeeeCC-ccCcC-CCCCCEEEcccccc
Q 044830 290 SKLTRISLAHLNFTGQLP-LSAFN-LTQLSLLELSRNQF 326 (801)
Q Consensus 290 ~~L~~L~L~~n~l~~~~p-~~l~~-l~~L~~L~l~~n~~ 326 (801)
..++.|+++.+.....-- ..... ...++.+++.++..
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 226777777665331110 01111 45566666666544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.61 E-value=0.00046 Score=75.85 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=17.7
Q ss_pred ceEEEccCCeeeee----ccccccccccCceEeCcCcccc
Q 044830 632 FTTIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILR 667 (801)
Q Consensus 632 L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 667 (801)
++.+|++.|.|+.. ..+.+.....++.|.++.|.+.
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44555555555432 2233444445555555555544
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.68 E-value=0.0007 Score=74.43 Aligned_cols=138 Identities=25% Similarity=0.272 Sum_probs=69.6
Q ss_pred CCEEECcCCCCccc----CCccccCCCCCCEEeCCCCcccc----cCCcc----ccCCCCccEEECCCCcCCCC----CC
Q 044830 441 IEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRG----SIPQI----FSKCYDLVALNLNDNELEGK----LP 504 (801)
Q Consensus 441 L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~----~~ 504 (801)
+++|++..|.+++. +.+.+.....++.++++.|.+.. .++.. +....++++|++++|.++.. +.
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 44445555544422 23334444455555555554421 11111 22345566666666665421 11
Q ss_pred ccccCCCC-CcEEeCCCCcCCCCc----chhccCC-CCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCcc
Q 044830 505 PSLANCGD-LEVLDVGNNKINDAF----PYWTATL-PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGL 578 (801)
Q Consensus 505 ~~l~~l~~-L~~L~Ls~n~i~~~~----~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 578 (801)
..+...+. +.+|++..|++.+.. ...+..+ +.++.++++.|.+.......+......++.+++++++.|.+...
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 22333334 555677777665431 1223333 55677777777776555444444445566777777777776643
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.71 E-value=0.01 Score=56.55 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=56.1
Q ss_pred CcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCE
Q 044830 40 GHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVA 119 (801)
Q Consensus 40 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~ 119 (801)
.+|+.||++.+.+...- . .++.++.+..||++.|.+.- +|..++....++.+++..|..+ ..|.++..++++++
T Consensus 42 kr~tvld~~s~r~vn~~-~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLG-K--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhhc-c--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 46788888877764321 1 46667777777887776643 5667777777777777777766 56777777777777
Q ss_pred EeCCCC
Q 044830 120 LDLSSD 125 (801)
Q Consensus 120 L~Ls~n 125 (801)
+++-.+
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 777766
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.37 E-value=0.028 Score=52.67 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=63.9
Q ss_pred cccccccCCCCCCCCCCCCCCCccc--ceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcc
Q 044830 6 SSHCDAAVTYPKTKSWNKDGDCCSW--DGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKI 83 (801)
Q Consensus 6 ~~~~~~~~~~~~l~~w~~~~~~c~w--~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~ 83 (801)
-+||-.++++..-..|...+.-|.. .+-. ...-.|..+|-++..|..+-.. .+..++.++.|.+.+|.--+.--
T Consensus 67 Il~~GgaVkf~~d~~~~~~d~~g~~~lp~~~--~~~~~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck~~dD~~ 142 (221)
T KOG3864|consen 67 ILHCGGAVKFVSDREWLQKDYNGYFSLPGPN--ADNVKIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCKYFDDWC 142 (221)
T ss_pred HHhcCcceeecCChHhhcCcccceecCCCCC--CCcceEEEEecCCchHHHHHHH--HHhccchhhhheeccccchhhHH
Confidence 4567777777656666544433332 1111 1123588899998888655333 66777777777777775322101
Q ss_pred ccccc-CCCCCCEEeCCCCC-CccccccCCcCCCCCCEEeCC
Q 044830 84 SSNFG-QFTKLTHLNLSFSY-FSGIVPSQISRLSKLVALDLS 123 (801)
Q Consensus 84 ~~~~~-~l~~L~~L~Ls~n~-i~~~~p~~l~~l~~L~~L~Ls 123 (801)
-+.++ -.++|+.|+|++|. |++.--..+.++++|+.|.+.
T Consensus 143 L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 143 LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 11122 34577777777663 554333345556666666554
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.84 E-value=0.22 Score=26.62 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=3.0
Q ss_pred CceEeCcCcc
Q 044830 656 LKLLNFSHNI 665 (801)
Q Consensus 656 L~~L~Ls~N~ 665 (801)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.34 E-value=0.81 Score=27.51 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=10.8
Q ss_pred CCCCEEeCCCCCCccccc
Q 044830 91 TKLTHLNLSFSYFSGIVP 108 (801)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~p 108 (801)
++|++|+|++|.++...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666664433
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.34 E-value=0.81 Score=27.51 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=10.8
Q ss_pred CCCCEEeCCCCCCccccc
Q 044830 91 TKLTHLNLSFSYFSGIVP 108 (801)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~p 108 (801)
++|++|+|++|.++...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666664433
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.04 E-value=0.69 Score=27.81 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=6.1
Q ss_pred cCceEeCcCcccc
Q 044830 655 SLKLLNFSHNILR 667 (801)
Q Consensus 655 ~L~~L~Ls~N~l~ 667 (801)
+|+.|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.04 E-value=0.69 Score=27.81 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=6.1
Q ss_pred cCceEeCcCcccc
Q 044830 655 SLKLLNFSHNILR 667 (801)
Q Consensus 655 ~L~~L~Ls~N~l~ 667 (801)
+|+.|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.61 E-value=0.033 Score=53.22 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=59.8
Q ss_pred cccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCC
Q 044830 237 TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316 (801)
Q Consensus 237 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 316 (801)
.+......+.||++.|++. .+...|+-++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3445566677777777654 23344566667777777777766 56777777777777777777766 567777777777
Q ss_pred CEEEccccccc
Q 044830 317 SLLELSRNQFV 327 (801)
Q Consensus 317 ~~L~l~~n~~~ 327 (801)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777776654
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.57 E-value=0.39 Score=28.29 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.3
Q ss_pred cceEEEccCCeeeee
Q 044830 631 IFTTIDLSNNRFEGM 645 (801)
Q Consensus 631 ~L~~LdLs~N~l~~~ 645 (801)
.|++|||++|+|++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 455666666665544
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.60 E-value=0.54 Score=44.38 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=14.0
Q ss_pred CCEEeCCCCCCccccccCCcCCCCCCEEeCCCC
Q 044830 93 LTHLNLSFSYFSGIVPSQISRLSKLVALDLSSD 125 (801)
Q Consensus 93 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n 125 (801)
++.+|-+++.|..+--..+..++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444444333333444444444444443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.76 E-value=13 Score=39.94 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred ccEEEecCCCCCCCCcc---ccccCCCCCEEECcCCCCcc----cCCccccCCCCCCEEeCCCCcc
Q 044830 417 IRFLSVSDNKLTGEFPS---SICNLSTIEYLNLSNNSLSG----MIPQCLANFDSLSLLDLRKNQF 475 (801)
Q Consensus 417 L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~i~~----~~~~~l~~l~~L~~L~L~~n~l 475 (801)
+..+.++.+......-. .+..-+.+..|++++|.... .+|..+..-..+.....+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 55666777766532221 23345678888898887653 2344444334555555555544
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.11 E-value=6.2 Score=23.84 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=8.9
Q ss_pred CCCCEEeCCCCCCc
Q 044830 91 TKLTHLNLSFSYFS 104 (801)
Q Consensus 91 ~~L~~L~Ls~n~i~ 104 (801)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.74 E-value=33 Score=37.12 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=27.4
Q ss_pred ceEEEccCCeeeeecccc---ccccccCceEeCcCccccc----cCCccccCCCCCCeEeCcCC
Q 044830 632 FTTIDLSNNRFEGMIPKE---VGKLSSLKLLNFSHNILRG----EIPVELTSLTALSVLNLSFN 688 (801)
Q Consensus 632 L~~LdLs~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N 688 (801)
++.+.++.|++....-.. +..-+.+..|++++|.... .+|..+..-.+++....+.|
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 455666666665332221 2223456667777766542 23444433344444444444
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.47 E-value=7.3 Score=23.50 Aligned_cols=12 Identities=58% Similarity=0.595 Sum_probs=5.5
Q ss_pred CceEeCcCcccc
Q 044830 656 LKLLNFSHNILR 667 (801)
Q Consensus 656 L~~L~Ls~N~l~ 667 (801)
|+.|+.++|+|+
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.22 E-value=9.7 Score=23.36 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=9.0
Q ss_pred CCCCEEeCCCCCCc
Q 044830 91 TKLTHLNLSFSYFS 104 (801)
Q Consensus 91 ~~L~~L~Ls~n~i~ 104 (801)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666777766664
No 91
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=34.03 E-value=40 Score=32.28 Aligned_cols=24 Identities=4% Similarity=-0.096 Sum_probs=9.4
Q ss_pred eEEEEEehhhhhhHhhhHHhhhhc
Q 044830 748 WKIVVMGYGCGVIWGLSLGYLAFS 771 (801)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~ 771 (801)
++++++..|+..|+.++++..+.|
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHH
Confidence 444444444333333333333333
No 92
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=30.62 E-value=33 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=9.6
Q ss_pred EEEEehhhhhhHhhhHHhhh
Q 044830 750 IVVMGYGCGVIWGLSLGYLA 769 (801)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~ 769 (801)
++++++++.++++++++.+.
T Consensus 68 iagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEEEEeehhhHHHHHHHHHh
Confidence 44555544444544444443
No 93
>PF15179 Myc_target_1: Myc target protein 1
Probab=30.17 E-value=25 Score=32.44 Aligned_cols=23 Identities=22% Similarity=0.666 Sum_probs=15.2
Q ss_pred eEEEEEehhhhhhHhhhHHhhhh
Q 044830 748 WKIVVMGYGCGVIWGLSLGYLAF 770 (801)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~ 770 (801)
|.-++++|.+.+++|+++|.++|
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~ 40 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIW 40 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777766664
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.59 E-value=47 Score=19.73 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=5.5
Q ss_pred CCCCEEeccCC
Q 044830 194 PFLRQLTLSDN 204 (801)
Q Consensus 194 ~~L~~L~Ls~n 204 (801)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=27.17 E-value=38 Score=30.60 Aligned_cols=7 Identities=14% Similarity=0.586 Sum_probs=3.8
Q ss_pred HHHHHhh
Q 044830 777 WLMMMMF 783 (801)
Q Consensus 777 ~~~~~~~ 783 (801)
||+.+++
T Consensus 101 ~w~~l~G 107 (154)
T PF04478_consen 101 WWYSLLG 107 (154)
T ss_pred HHHHHhC
Confidence 5555555
No 96
>PRK09459 pspG phage shock protein G; Reviewed
Probab=26.43 E-value=67 Score=25.00 Aligned_cols=16 Identities=25% Similarity=-0.002 Sum_probs=8.8
Q ss_pred hhhhhhhhhcCCCCCC
Q 044830 785 RHDAEKMRRIKPRPQR 800 (801)
Q Consensus 785 ~~~~~~~~~~~~~~~~ 800 (801)
+..|++.++..||+||
T Consensus 59 W~~r~~~~~~~~~y~~ 74 (76)
T PRK09459 59 WVIRAIKAPKVPRYQR 74 (76)
T ss_pred HHHHHhhccccccccc
Confidence 3344444555667766
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.50 E-value=37 Score=45.28 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=26.2
Q ss_pred EccCCeeeeeccccccccccCceEeCcCccccc
Q 044830 636 DLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG 668 (801)
Q Consensus 636 dLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 668 (801)
||++|+|+...+..|..+.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 678888887777778888888888888887653
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.90 E-value=38 Score=37.50 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCCCccEEECCCCcCC--CCCCccccCCCCCcEEeCCCC--cCCCCcchhccCCCCCCEEEccCCcCc
Q 044830 485 KCYDLVALNLNDNELE--GKLPPSLANCGDLEVLDVGNN--KINDAFPYWTATLPRLQVLVLRSNSFH 548 (801)
Q Consensus 485 ~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~N~l~ 548 (801)
+.+.+..+.|++|++. ..+..--...++|+.|+|++| .+.....-+--+...|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
No 99
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.09 E-value=60 Score=35.25 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=18.0
Q ss_pred eEEEEEehhhhhhHhhhHHhhhhc
Q 044830 748 WKIVVMGYGCGVIWGLSLGYLAFS 771 (801)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~ 771 (801)
-.+++|++++.+|+|.+|+++.||
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhh
Confidence 346677777788888888887765
No 100
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.68 E-value=46 Score=44.47 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=14.8
Q ss_pred chhhhhhhcccceEEEccCCeee
Q 044830 621 VDLEMERVLNIFTTIDLSNNRFE 643 (801)
Q Consensus 621 ~~~~~~~~l~~L~~LdLs~N~l~ 643 (801)
++...+..++.|+.|+|++|.+.
T Consensus 10 Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 10 IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred cChHHhccCCCceEEEeeCCccc
Confidence 33444555677777777777765
Done!