Query 044830
Match_columns 801
No_of_seqs 740 out of 5562
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.3E-86 1.8E-90 783.5 45.5 650 7-726 18-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.4E-68 1.2E-72 630.9 38.5 621 66-711 50-714 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3E-58 1E-62 541.1 48.6 588 45-696 9-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-56 1.2E-60 523.4 47.1 594 69-718 7-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4.1E-53 1.4E-57 490.7 41.6 518 67-696 34-565 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-53 1.3E-57 507.2 35.9 544 91-726 24-591 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 9.9E-52 3.4E-56 479.1 37.3 528 44-696 15-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.1E-51 1.1E-55 474.9 39.2 526 30-584 14-568 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.9E-50 2.3E-54 463.7 39.6 528 26-585 5-567 (606)
10 4eco_A Uncharacterized protein 100.0 1.6E-50 5.3E-55 468.4 25.0 480 13-550 52-602 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-48 3.9E-53 468.3 37.7 521 28-584 14-568 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-47 1.9E-51 434.0 34.1 499 27-696 3-515 (549)
13 4ecn_A Leucine-rich repeat pro 100.0 3.5E-48 1.2E-52 455.0 23.8 476 8-531 276-847 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 2.7E-46 9.3E-51 430.5 38.4 499 66-697 28-537 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 4.3E-44 1.5E-48 412.2 39.4 492 170-718 28-535 (570)
16 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-43 1.8E-47 408.8 38.9 516 66-695 52-584 (635)
17 4eco_A Uncharacterized protein 100.0 7.9E-46 2.7E-50 429.0 14.2 452 115-692 81-601 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-44 2E-48 408.8 27.8 498 68-718 7-514 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-43 7.5E-48 401.0 29.1 463 69-584 3-489 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-44 8E-49 409.0 20.7 464 118-695 3-485 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 8.7E-43 3E-47 409.3 27.3 334 180-547 435-818 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-40 1.5E-44 384.0 39.9 543 15-585 10-589 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.3E-41 1.8E-45 384.5 24.8 417 216-696 74-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-40 7.9E-45 379.3 28.2 464 43-584 34-518 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 5.4E-38 1.8E-42 350.5 31.4 365 170-580 30-412 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 7.2E-39 2.5E-43 354.3 22.0 403 143-697 10-417 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1E-37 3.5E-42 348.2 30.2 392 198-698 14-415 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 8.2E-38 2.8E-42 345.9 26.5 384 216-713 9-408 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 8.9E-36 3.1E-40 329.8 24.9 364 108-587 35-398 (457)
30 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-36 6.1E-41 319.2 15.6 272 17-325 23-302 (313)
31 1o6v_A Internalin A; bacterial 100.0 2.6E-34 8.9E-39 320.9 33.0 345 193-692 45-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-35 1.5E-39 324.3 26.1 354 216-697 40-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 3.8E-33 1.3E-37 311.5 35.4 325 170-580 46-370 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 6.1E-34 2.1E-38 319.5 25.2 216 432-718 145-360 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-34 6.4E-39 303.7 18.4 259 415-723 50-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 5.1E-32 1.8E-36 303.8 30.4 301 218-548 32-333 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 7.3E-32 2.5E-36 294.1 27.8 315 216-582 43-358 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 2E-31 6.9E-36 290.6 27.4 351 17-429 2-353 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2.7E-31 9.1E-36 305.7 27.9 316 216-583 49-365 (597)
40 4fmz_A Internalin; leucine ric 100.0 3.1E-30 1.1E-34 276.7 30.1 285 238-576 62-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.5E-30 5.2E-35 299.3 29.0 349 17-430 8-360 (597)
42 4fmz_A Internalin; leucine ric 100.0 2.7E-30 9.1E-35 277.2 27.1 196 435-691 151-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-33 8.9E-38 313.2 -5.8 383 218-692 3-441 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 9.1E-29 3.1E-33 263.2 25.9 287 219-545 34-330 (332)
45 1xku_A Decorin; proteoglycan, 100.0 2.8E-28 9.6E-33 259.3 28.4 291 219-574 32-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 6.7E-28 2.3E-32 256.3 28.1 275 66-375 52-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-32 1.6E-36 303.1 -5.1 369 242-693 3-413 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.6E-28 2.9E-32 255.7 23.9 288 195-522 34-331 (332)
49 4fcg_A Uncharacterized protein 100.0 1.9E-28 6.4E-33 259.4 13.6 247 17-326 46-313 (328)
50 2z66_A Variable lymphocyte rec 100.0 2.3E-27 7.8E-32 249.4 21.4 253 395-695 8-265 (306)
51 3zyi_A Leucine-rich repeat-con 99.9 1.4E-26 4.8E-31 257.3 25.0 251 396-695 56-307 (452)
52 3ogk_B Coronatine-insensitive 99.9 2.4E-30 8.3E-35 298.8 -6.3 315 26-378 40-392 (592)
53 2z80_A TOLL-like receptor 2, v 99.9 2.4E-27 8.3E-32 254.5 16.4 277 399-696 36-319 (353)
54 3zyj_A Leucine-rich repeat-con 99.9 2.8E-26 9.5E-31 253.9 24.2 251 395-694 44-295 (440)
55 1ozn_A Reticulon 4 receptor; N 99.9 7E-27 2.4E-31 242.9 17.4 153 397-549 14-167 (285)
56 2z80_A TOLL-like receptor 2, v 99.9 9.5E-27 3.2E-31 249.9 17.7 289 18-354 20-318 (353)
57 4fcg_A Uncharacterized protein 99.9 8.8E-27 3E-31 246.6 15.2 225 415-691 81-314 (328)
58 3ogk_B Coronatine-insensitive 99.9 5.8E-29 2E-33 287.2 -3.4 409 106-550 64-528 (592)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-26 9.1E-31 238.5 17.1 230 417-696 13-243 (285)
60 2z66_A Variable lymphocyte rec 99.9 2.4E-25 8.1E-30 234.0 22.7 162 415-580 101-265 (306)
61 3zyi_A Leucine-rich repeat-con 99.9 5.7E-25 1.9E-29 244.3 24.0 252 416-718 55-307 (452)
62 1wwl_A Monocyte differentiatio 99.9 1E-27 3.4E-32 252.4 1.4 248 395-692 44-310 (312)
63 3zyj_A Leucine-rich repeat-con 99.9 8.8E-25 3E-29 241.9 23.9 252 416-718 44-296 (440)
64 2p1m_B Transport inhibitor res 99.9 6.2E-29 2.1E-33 287.2 -13.0 265 26-324 33-324 (594)
65 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-24 2.2E-28 241.6 27.0 262 315-696 41-302 (622)
66 2z62_A TOLL-like receptor 4, v 99.9 7.7E-24 2.6E-28 218.8 21.5 213 440-696 29-242 (276)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-25 5.5E-30 236.2 8.1 260 220-521 12-272 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-25 6.2E-30 235.7 8.3 266 243-551 11-279 (317)
69 3oja_A Leucine-rich immune mol 99.9 6.4E-25 2.2E-29 245.0 13.0 222 414-695 33-255 (487)
70 1wwl_A Monocyte differentiatio 99.9 8E-27 2.7E-31 245.6 -2.9 269 18-328 21-310 (312)
71 3g06_A SSPH2 (leucine-rich rep 99.9 6.5E-23 2.2E-27 233.3 27.7 114 219-350 41-154 (622)
72 2o6q_A Variable lymphocyte rec 99.9 8.5E-23 2.9E-27 210.0 22.3 216 25-278 2-217 (270)
73 3oja_A Leucine-rich immune mol 99.9 3.7E-24 1.3E-28 238.9 11.5 59 267-327 35-93 (487)
74 2p1m_B Transport inhibitor res 99.9 3.9E-26 1.3E-30 263.7 -7.8 132 240-374 103-245 (594)
75 2o6q_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 205.5 21.7 205 441-695 18-222 (270)
76 3rfs_A Internalin B, repeat mo 99.9 4.2E-22 1.4E-26 205.0 17.7 222 416-697 20-241 (272)
77 3rfs_A Internalin B, repeat mo 99.9 4.2E-22 1.4E-26 205.0 17.2 208 414-679 40-247 (272)
78 3goz_A Leucine-rich repeat-con 99.9 1.2E-23 4.1E-28 226.3 3.8 242 415-694 22-300 (362)
79 2z62_A TOLL-like receptor 4, v 99.9 2.2E-21 7.4E-26 200.4 20.0 208 66-330 28-240 (276)
80 1p9a_G Platelet glycoprotein I 99.9 2E-21 6.8E-26 201.5 19.6 205 435-693 6-210 (290)
81 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.6E-28 222.7 3.1 212 25-252 34-257 (336)
82 3goz_A Leucine-rich repeat-con 99.9 5.1E-23 1.7E-27 221.3 3.6 218 416-672 52-302 (362)
83 1p9a_G Platelet glycoprotein I 99.9 1.3E-20 4.6E-25 195.2 21.2 150 396-548 12-161 (290)
84 4glp_A Monocyte differentiatio 99.9 6.2E-22 2.1E-26 208.0 10.8 208 439-692 91-308 (310)
85 3m19_A Variable lymphocyte rec 99.9 1.8E-20 6.1E-25 190.3 20.4 182 395-580 15-196 (251)
86 2xwt_C Thyrotropin receptor; s 99.9 7.3E-21 2.5E-25 191.8 16.5 206 406-689 23-237 (239)
87 3m19_A Variable lymphocyte rec 99.8 4.3E-21 1.5E-25 194.9 14.6 212 440-726 15-232 (251)
88 2ca6_A RAN GTPase-activating p 99.8 1.6E-22 5.4E-27 219.8 2.1 186 141-328 91-317 (386)
89 2ca6_A RAN GTPase-activating p 99.8 1.5E-22 5E-27 220.0 1.8 239 414-695 31-320 (386)
90 1h6u_A Internalin H; cell adhe 99.8 2.8E-20 9.4E-25 194.9 18.8 147 414-576 40-186 (308)
91 1h6u_A Internalin H; cell adhe 99.8 1.9E-20 6.4E-25 196.2 16.8 211 417-692 21-231 (308)
92 4glp_A Monocyte differentiatio 99.8 2.3E-21 8E-26 203.6 9.0 230 439-712 64-305 (310)
93 4ay9_X Follicle-stimulating ho 99.8 2E-20 6.8E-25 200.0 14.8 244 395-689 10-257 (350)
94 2ast_B S-phase kinase-associat 99.8 1.5E-21 5.2E-26 208.0 4.7 254 67-358 48-314 (336)
95 2xwt_C Thyrotropin receptor; s 99.8 3.8E-20 1.3E-24 186.5 13.5 195 464-710 32-235 (239)
96 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 179.0 15.8 149 397-545 10-158 (208)
97 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 178.9 15.0 129 395-523 29-160 (208)
98 3cvr_A Invasion plasmid antige 99.8 6.1E-19 2.1E-23 198.0 16.2 197 415-679 59-255 (571)
99 3cvr_A Invasion plasmid antige 99.8 8.5E-19 2.9E-23 196.9 16.7 182 440-696 60-248 (571)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 6.5E-18 2.2E-22 167.3 16.9 140 441-584 34-174 (220)
101 4ay9_X Follicle-stimulating ho 99.8 2.4E-18 8.1E-23 183.8 14.6 233 418-704 12-249 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 1.1E-17 3.7E-22 165.7 16.9 154 397-578 14-167 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-17 7.4E-22 163.5 17.6 156 395-550 12-168 (220)
104 3e6j_A Variable lymphocyte rec 99.7 2.9E-17 1E-21 163.8 17.3 150 395-545 20-169 (229)
105 2v9t_B SLIT homolog 2 protein 99.7 3.4E-17 1.2E-21 162.1 17.6 150 442-599 14-163 (220)
106 2xot_A Amphoterin-induced prot 99.7 7.1E-18 2.4E-22 180.9 13.0 180 395-578 19-204 (361)
107 1h6t_A Internalin B; cell adhe 99.7 2.1E-17 7.1E-22 171.3 13.9 190 416-692 25-214 (291)
108 2xot_A Amphoterin-induced prot 99.7 2.6E-17 8.8E-22 176.5 14.1 166 417-587 20-186 (361)
109 1h6t_A Internalin B; cell adhe 99.7 6.4E-17 2.2E-21 167.6 16.3 147 414-576 45-191 (291)
110 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.8E-22 189.2 12.1 147 414-576 42-188 (605)
111 1m9s_A Internalin B; cell inva 99.7 7.8E-17 2.7E-21 183.1 18.0 190 365-578 22-212 (605)
112 3e6j_A Variable lymphocyte rec 99.7 2.1E-16 7.2E-21 157.6 18.5 157 416-580 20-176 (229)
113 4ezg_A Putative uncharacterize 99.7 1.2E-16 4.2E-21 155.3 13.0 153 413-577 42-195 (197)
114 4b8c_D Glucose-repressible alc 99.7 3.5E-17 1.2E-21 190.9 8.4 195 445-696 207-409 (727)
115 1dce_A Protein (RAB geranylger 99.7 1.2E-19 4.1E-24 205.1 -12.9 209 88-321 346-567 (567)
116 1xeu_A Internalin C; cellular 99.6 2.6E-16 8.9E-21 160.3 10.5 150 484-693 38-187 (263)
117 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.2E-20 148.2 14.1 149 395-549 45-195 (197)
118 1dce_A Protein (RAB geranylger 99.6 1.2E-18 4.2E-23 196.8 -8.5 220 287-570 346-567 (567)
119 1xeu_A Internalin C; cellular 99.6 8.1E-16 2.8E-20 156.7 11.9 166 396-578 21-187 (263)
120 4b8c_D Glucose-repressible alc 99.6 5.8E-17 2E-21 189.1 3.4 153 420-581 206-359 (727)
121 1w8a_A SLIT protein; signaling 99.6 5.6E-15 1.9E-19 142.8 14.8 136 442-584 11-147 (192)
122 1w8a_A SLIT protein; signaling 99.6 6.6E-15 2.3E-19 142.2 14.9 129 397-525 11-140 (192)
123 3sb4_A Hypothetical leucine ri 99.6 4E-15 1.4E-19 157.3 13.0 104 437-542 224-328 (329)
124 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.8E-20 161.7 6.1 103 414-518 225-328 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 6.5E-15 2.2E-19 139.1 9.8 131 415-547 24-159 (168)
126 2wfh_A SLIT homolog 2 protein 99.6 2.9E-14 1E-18 137.6 14.3 108 440-548 32-139 (193)
127 2ell_A Acidic leucine-rich nuc 99.6 7.2E-15 2.5E-19 138.8 9.8 139 438-580 23-163 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 137.0 8.2 126 415-542 17-147 (149)
129 2o6r_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 134.6 14.9 131 395-525 8-138 (177)
130 2wfh_A SLIT homolog 2 protein 99.5 5E-14 1.7E-18 136.0 14.4 131 442-580 13-143 (193)
131 2je0_A Acidic leucine-rich nuc 99.5 9.3E-15 3.2E-19 135.0 7.9 132 438-572 16-149 (149)
132 2o6r_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 133.1 14.1 133 441-580 9-141 (177)
133 4fs7_A Uncharacterized protein 99.4 4.8E-12 1.6E-16 137.2 22.5 323 170-540 71-393 (394)
134 4fdw_A Leucine rich hypothetic 99.4 4.5E-12 1.5E-16 136.7 21.9 126 416-545 249-380 (401)
135 4fdw_A Leucine rich hypothetic 99.4 1.7E-11 6E-16 132.1 23.9 90 431-523 292-382 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.4 3.7E-13 1.3E-17 128.0 9.6 137 436-576 16-153 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.4 3.7E-13 1.3E-17 128.0 8.7 131 413-548 17-153 (176)
138 4fs7_A Uncharacterized protein 99.4 2.4E-11 8.2E-16 131.7 22.2 310 187-545 64-376 (394)
139 1ds9_A Outer arm dynein; leuci 99.4 3.9E-15 1.3E-19 144.8 -8.1 155 415-576 18-185 (198)
140 1ds9_A Outer arm dynein; leuci 99.4 7.4E-15 2.5E-19 142.8 -6.6 132 506-691 43-185 (198)
141 3g39_A Variable lymphocyte rec 99.3 7.1E-12 2.4E-16 118.1 12.5 106 418-526 12-117 (170)
142 3g39_A Variable lymphocyte rec 99.3 7.7E-12 2.6E-16 117.9 12.5 90 487-580 30-119 (170)
143 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 116.5 12.4 81 442-525 15-95 (174)
144 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.9E-16 116.4 11.8 105 418-525 15-119 (174)
145 4gt6_A Cell surface protein; l 99.2 2.2E-09 7.6E-14 116.1 27.1 133 432-575 258-390 (394)
146 3un9_A NLR family member X1; l 99.2 1.4E-13 4.9E-18 147.0 -6.1 39 631-669 212-254 (372)
147 3un9_A NLR family member X1; l 99.2 3.6E-13 1.2E-17 143.9 -4.6 115 463-577 101-225 (372)
148 4gt6_A Cell surface protein; l 99.2 2.3E-09 7.9E-14 116.0 24.7 326 188-546 57-389 (394)
149 2ifg_A High affinity nerve gro 99.0 5.8E-10 2E-14 118.6 11.3 103 419-524 12-116 (347)
150 2ifg_A High affinity nerve gro 99.0 7.7E-10 2.6E-14 117.6 11.2 101 399-500 13-116 (347)
151 2ra8_A Uncharacterized protein 98.9 7.2E-10 2.5E-14 117.2 4.9 164 481-689 166-341 (362)
152 4h09_A Hypothetical leucine ri 98.8 6.8E-07 2.3E-11 96.0 23.1 109 433-544 234-342 (379)
153 2ra8_A Uncharacterized protein 98.8 3.4E-09 1.2E-13 112.0 4.7 186 435-665 135-341 (362)
154 4h09_A Hypothetical leucine ri 98.7 1.3E-06 4.3E-11 93.9 24.3 134 432-573 210-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 2.3E-08 8E-13 95.2 0.3 62 630-691 93-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 2.8E-09 9.5E-14 106.6 -8.0 24 26-49 76-99 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 6.7E-08 2.3E-12 92.0 0.1 68 481-548 30-106 (185)
158 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.9E-11 85.9 4.2 67 628-696 168-238 (267)
159 3e4g_A ATP synthase subunit S, 97.7 1.8E-05 6.1E-10 73.1 3.7 82 219-300 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.6 1.4E-05 4.8E-10 73.8 1.8 84 242-325 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00013 4.3E-09 68.7 1.3 11 486-496 40-50 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0001 3.5E-09 69.4 0.1 70 507-576 37-111 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0021 7.2E-08 56.4 5.1 58 633-692 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.0082 2.8E-07 52.5 6.7 54 398-451 12-67 (130)
165 2lz0_A Uncharacterized protein 37.7 37 0.0013 27.4 4.4 41 503-544 12-52 (100)
166 2lz0_A Uncharacterized protein 34.8 41 0.0014 27.1 4.3 38 481-519 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-86 Score=783.52 Aligned_cols=650 Identities=30% Similarity=0.427 Sum_probs=575.9
Q ss_pred ccccccCCCC-CCCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcc---cCCCcccccCCCCCeeeCCCCCCCCCc
Q 044830 7 SHCDAAVTYP-KTKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGT---LHPNSTLFLLHHLQKLNLACNDFNGTK 82 (801)
Q Consensus 7 ~~~~~~~~~~-~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~ 82 (801)
+--|++...+ ++++|+.++|||+|+||.|+ +++|++|||+++++.|. +++ ++.++++|+.++++.+.+..
T Consensus 18 l~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~~L~~L~~l~~~~~~~~~-- 91 (768)
T 3rgz_A 18 ISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLLSLTGLESLFLSNSHING-- 91 (768)
T ss_dssp HHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTTTCTTCCEEECTTSCEEE--
T ss_pred HHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--hHhccCcccccCCcCCCcCC--
Confidence 3345544433 78999988999999999998 58999999999999998 777 89999999999999998733
Q ss_pred ccccccCCCCCCEEeCCCCCCcccccc--CCcCCCCCCEEeCCCCcCCCccccCchhHhh-cCCCCCCEEeCCCccCCCC
Q 044830 83 ISSNFGQFTKLTHLNLSFSYFSGIVPS--QISRLSKLVALDLSSDIPRTKFEQHTFNNLA-KNLTELRYLLLDNVQMFSV 159 (801)
Q Consensus 83 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~ 159 (801)
+|..|+.+++|++|+|++|.+++.+|. .++++++|++|++++|. +. +..|..+ .++++|++|++++|.+.+.
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~--l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 166 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT--LD---FPGKVSGGLKLNSLEVLDLSANSISGA 166 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE--EE---CCSSCCSCCCCTTCSEEECCSSCCEEE
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc--cC---CcCCHHHhccCCCCCEEECCCCccCCc
Confidence 567899999999999999999998888 89999999999999993 32 3333333 7899999999999999999
Q ss_pred Cchh---hhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcc
Q 044830 160 VPSS---LLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPD 236 (801)
Q Consensus 160 ~~~~---l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 236 (801)
.+.. +.++ ++|++|++++|.+.+..+ +..+++|++|++++| .+.+.+|.+..+++|++|++++|.+++.+|.
T Consensus 167 ~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 167 NVVGWVLSDGC--GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp THHHHHHTTCC--TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred CChhhhhhccC--CCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 8887 7788 999999999999997665 389999999999999 5566667655899999999999999999999
Q ss_pred cccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCC-CCCcEeeccCeeeeeeCCccCcCCCC
Q 044830 237 TIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNL-SKLTRISLAHLNFTGQLPLSAFNLTQ 315 (801)
Q Consensus 237 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~ 315 (801)
.++++++|++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..++++++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 9999999999999999999888775 89999999999999999999988775 99999999999999999999999999
Q ss_pred CCEEEcccccccccCCCC-C-CCCCCCEEEccCCcCCcccchhhcCCCCCC-CccEEEccCCCccccccccCCCC-cccc
Q 044830 316 LSLLELSRNQFVGQLPCH-A-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSE-NLVELDLSNNKLTGQIFQLDQWP-VERI 391 (801)
Q Consensus 316 L~~L~l~~n~~~~~~~~~-~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~~-~~~~ 391 (801)
|++|++++|.+++.+|.. + .+++|++|++++|.+++.+|..+.. ++ +|+.|++++|.+++.++...... ..
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~---l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~-- 394 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN---LSASLLTLDLSSNNFSGPILPNLCQNPKN-- 394 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH---HTTTCSEEECCSSEEEEECCTTTTCSTTC--
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh---hhcCCcEEEccCCCcCCCcChhhhhcccC--
Confidence 999999999999888865 4 8999999999999999999998887 55 89999999999998877665221 22
Q ss_pred cceeeeEEEecCCCCCCCCCC---ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEE
Q 044830 392 SSVELRHLDVQSNLLQRLPFI---LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLL 468 (801)
Q Consensus 392 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 468 (801)
.++.|++++|.+.+..+. .+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus 395 ---~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 395 ---TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp ---CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ---CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 789999999998866543 37889999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830 469 DLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548 (801)
Q Consensus 469 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 548 (801)
++++|++++.+|..+..+++|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|+.|++++|++.
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCC------------------------------------------------------------------CCCCCCC
Q 044830 549 GPIYNNV------------------------------------------------------------------PSIKRPF 562 (801)
Q Consensus 549 ~~~~~~~------------------------------------------------------------------~~~~~~l 562 (801)
|.+|..+ |..+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 8777432 1123446
Q ss_pred CCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCee
Q 044830 563 PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRF 642 (801)
Q Consensus 563 ~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 642 (801)
++|+.|||++|+++|.+|..+ . .++.|+.|||++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l-~------------------------------------------~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEI-G------------------------------------------SMPYLFILNLGHNDI 668 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGG-G------------------------------------------GCTTCCEEECCSSCC
T ss_pred ccccEEECcCCcccccCCHHH-h------------------------------------------ccccCCEEeCcCCcc
Confidence 778888888888888888652 2 245689999999999
Q ss_pred eeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCCCCCC
Q 044830 643 EGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQ 722 (801)
Q Consensus 643 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~ 722 (801)
+|.+|..|+++++|++||||+|+++|.+|..++++++|++||+++|+++|+||.++||.+|...+|.||++|||.|+. .
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~ 747 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-R 747 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-C
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 8
Q ss_pred CCCC
Q 044830 723 CSNY 726 (801)
Q Consensus 723 c~~~ 726 (801)
|...
T Consensus 748 C~~~ 751 (768)
T 3rgz_A 748 CDPS 751 (768)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-68 Score=630.91 Aligned_cols=621 Identities=29% Similarity=0.401 Sum_probs=525.1
Q ss_pred CCCCeeeCCCCCCCCC--cccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhH--hhc
Q 044830 66 HHLQKLNLACNDFNGT--KISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNN--LAK 141 (801)
Q Consensus 66 ~~L~~L~Ls~n~~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~--~l~ 141 (801)
.+++.|+|+++.+.+. .++..+.++++|+.++++.+.+. .+|..++++++|++|||++|. +. +.+|. .++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNS--LS---GPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSE--EE---EEGGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCc--CC---CcCCChHHHh
Confidence 4688899999998763 15677999999999999999876 366889999999999999993 33 45666 899
Q ss_pred CCCCCCEEeCCCccCCCCCchhh-hccCCCCccEEEccCCcCccCCCcc---CCCCCCCCEEeccCCCCCccCCCCCCCC
Q 044830 142 NLTELRYLLLDNVQMFSVVPSSL-LNLSSASLISLSLGNCFLRGEFPID---IFHFPFLRQLTLSDNGLLTGNLPTSNWS 217 (801)
Q Consensus 142 ~l~~L~~L~L~~~~~~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~~~~~~~~~~~~~ 217 (801)
++++|++|++++|.+.+..|..+ .++ ++|++|++++|.+++..+.. +.++++|++|++++|. +.+..+. ..+
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~l 199 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKL--NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVDV-SRC 199 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCC--TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCBC-TTC
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccC--CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCCc-ccC
Confidence 99999999999999988888765 778 99999999999999888877 8899999999999994 4443333 588
Q ss_pred CCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeec
Q 044830 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISL 297 (801)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 297 (801)
++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|.. .+++|++|++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence 9999999999999987887 999999999999999999999999999999999999999999888775 8999999999
Q ss_pred cCeeeeeeCCccCcCC-CCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchh-hcCCCCCCCccEEEccCC
Q 044830 298 AHLNFTGQLPLSAFNL-TQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSW-LFNLSTSENLVELDLSNN 374 (801)
Q Consensus 298 ~~n~l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n 374 (801)
++|.+.+.+|..+... ++|++|++++|.+++.+|..+ .+++|++|++++|.+.|.+|.. +.. +++|++|++++|
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~---l~~L~~L~Ls~n 353 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK---MRGLKVLDLSFN 353 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT---CTTCCEEECCSS
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc---CCCCCEEeCcCC
Confidence 9999999999998875 999999999999999888887 8999999999999999999976 665 899999999999
Q ss_pred CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCc-----cccccEEEecCCCCCCCCccccccCCCCCEEECcCC
Q 044830 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFIL-----SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNN 449 (801)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 449 (801)
.+++.+|..+..-.. +++.|++++|.+.+..+.. +++|++|++++|.+++.+|..++.+++|++|++++|
T Consensus 354 ~l~~~~p~~l~~l~~-----~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 354 EFSGELPESLTNLSA-----SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp EEEECCCTTHHHHTT-----TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred ccCccccHHHHhhhc-----CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 999887765421111 7899999999988654332 578999999999999999999999999999999999
Q ss_pred CCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcch
Q 044830 450 SLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPY 529 (801)
Q Consensus 450 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 529 (801)
.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++.+.+|.
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCC-
Q 044830 530 WTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY- 608 (801)
Q Consensus 530 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~- 608 (801)
+++.+++|++|++++|++.|.+|..+ ..+++|+.||+++|+++|.+|..++.....+...........++.....
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAEL----GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGG----GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHH----cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 99999999999999999999888766 8899999999999999999998765432222111111011111100000
Q ss_pred --CceeeEE------------------------EEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCc
Q 044830 609 --DQYYSMI------------------------LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFS 662 (801)
Q Consensus 609 --~~~~~~~------------------------~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 662 (801)
....... ..+++.....+..++.|+.||||+|+++|.+|.+|+++++|+.|+|+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 0000000 01111112223446789999999999999999999999999999999
Q ss_pred CccccccCCccccCCCCCCeEeCcCCcceecCCCCC-CCCCcCcCcCCCC
Q 044830 663 HNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGK-QFDSFQNDSFIGN 711 (801)
Q Consensus 663 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~gn 711 (801)
+|+++|.+|..++++++|++|||++|+++|.||... .+..+......+|
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999999752 2333444445555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-58 Score=541.10 Aligned_cols=588 Identities=21% Similarity=0.236 Sum_probs=450.2
Q ss_pred EEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCC
Q 044830 45 LDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSS 124 (801)
Q Consensus 45 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~ 124 (801)
+|.++++++ .+|. .+. +++++|+|++|.+++. .+..|+.+++|++|+|++|.+++..|..|+++++|++|++++
T Consensus 9 ~~cs~~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 9 ADCSHLKLT-QVPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EECCSSCCS-SCCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eECCCCCcc-cccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 444455553 2333 332 6788888888887765 445577888888888888888777777778888888888887
Q ss_pred CcCCCccccCchh-HhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccC
Q 044830 125 DIPRTKFEQHTFN-NLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSD 203 (801)
Q Consensus 125 n~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 203 (801)
|. +. .+| ..+.++++|++|++++|.+.+..+..|.++ ++|++|++++|.+++..+..+.++++|++|++++
T Consensus 83 n~--l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 83 NE--LS----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp SC--CC----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC--TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred Cc--cC----ccChhhhccCCCCCEEECCCCccCccChhHcccc--CCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 73 22 223 346778888888888888877777778877 7888888888888877777778888888888888
Q ss_pred CCCCccCCCCC---CCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccc---cCCCCCCEEEcCCCC
Q 044830 204 NGLLTGNLPTS---NWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASL---SNLKQLTVLNLEDNQ 277 (801)
Q Consensus 204 n~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~ 277 (801)
|.+ .+..+.. ..+++|++|++++|.+++..|..+..+++|+.|++.++.+.......+ ...++|+.|++++|.
T Consensus 155 n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 155 NKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp SCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred Ccc-cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 843 3222221 245778888888888887777778888888888888777654322211 134678888888888
Q ss_pred CccccCccccCCCC--CcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcc--
Q 044830 278 FSGEFPDVFGNLSK--LTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGR-- 352 (801)
Q Consensus 278 l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~-- 352 (801)
+.+..|..|..++. |++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ .+++|++|++++|...+.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 88777777777654 8888888888887777777788888888888888877766666 777888888877655432
Q ss_pred ---cchh-hcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCC--CCCc-----cccccEEE
Q 044830 353 ---IPSW-LFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL--PFIL-----SSRIRFLS 421 (801)
Q Consensus 353 ---~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~-----~~~L~~L~ 421 (801)
+|.. -..+..+++|++|++++|.+++..+..+ ..++ +|+.|++++|.+... +... .++|+.|+
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~-----~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~ 387 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLI-----NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCT-----TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHh-cccc-----CCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence 2220 0112337788888888888876555443 2333 678888888764322 2111 25899999
Q ss_pred ecCCCCCCCCccccccCCCCCEEECcCCCCcccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC
Q 044830 422 VSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP-QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500 (801)
Q Consensus 422 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 500 (801)
+++|++++..|..+..+++|++|++++|.+++.+| ..+.++++|++|++++|++.+..+..|..+++|++|++++|.+.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 99999998888999999999999999999987665 68899999999999999999888999999999999999999986
Q ss_pred --CCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCC----CCCCCCCCcEEEccCCc
Q 044830 501 --GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPS----IKRPFPELRIIDISRNG 574 (801)
Q Consensus 501 --~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~~~l~~L~~LdLs~N~ 574 (801)
+..|..+.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+|. .+..+++|++|+|++|+
T Consensus 468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 568889999999999999999999998889999999999999999998764443332 35789999999999999
Q ss_pred CCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccc
Q 044830 575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLS 654 (801)
Q Consensus 575 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 654 (801)
++ .+|...|.+ ++.|+.|||++|++++..+..|.+++
T Consensus 548 l~-~i~~~~~~~------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 548 FD-EIPVEVFKD------------------------------------------LFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp CC-CCCTTTTTT------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CC-CCCHHHccc------------------------------------------ccCcceeECCCCCCCcCCHhHhCCCC
Confidence 98 566543332 45678999999999988888889999
Q ss_pred cCceEeCcCccccccCCcccc-CCCCCCeEeCcCCcceecCCC
Q 044830 655 SLKLLNFSHNILRGEIPVELT-SLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 655 ~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~iP~ 696 (801)
+|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus 585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999998888887 789999999999999998774
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-56 Score=523.44 Aligned_cols=594 Identities=19% Similarity=0.182 Sum_probs=476.9
Q ss_pred CeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCE
Q 044830 69 QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRY 148 (801)
Q Consensus 69 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~ 148 (801)
+.+++++++++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|. +. +..|..+.++++|++
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--IS---KLEPELCQKLPMLKV 77 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CC---CCCTTHHHHCTTCCE
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cC---ccCHHHHhcccCcCE
Confidence 578999998865 565454 799999999999998888889999999999999983 33 445678899999999
Q ss_pred EeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccC
Q 044830 149 LLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSI 227 (801)
Q Consensus 149 L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~ 227 (801)
|++++|.+....+..|..+ ++|++|++++|.+.+..+..+.++++|++|++++|.+ .+..+..+ .+++|++|++++
T Consensus 78 L~L~~n~l~~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFC--TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp EECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCS
T ss_pred EECCCCccCccChhhhccC--CCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccC
Confidence 9999999998888889999 9999999999999988778899999999999999954 44444444 899999999999
Q ss_pred ccCcccCccccc--CCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCcccc---CCCCCcEeeccCeee
Q 044830 228 TKFSGKIPDTIG--NLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFG---NLSKLTRISLAHLNF 302 (801)
Q Consensus 228 n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l 302 (801)
|.+++..+..+. .+++|++|++++|.+.+..|..+..+.+|+.|++.++.+.......+. ..++|++|++++|.+
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred CcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 999977776654 568999999999999999999999999999999999987643322221 347899999999999
Q ss_pred eeeCCccCcCCCC--CCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcccc
Q 044830 303 TGQLPLSAFNLTQ--LSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ 379 (801)
Q Consensus 303 ~~~~p~~l~~l~~--L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 379 (801)
.+..|..+..++. |++|++++|.+++..+..+ .+++|++|++++|.+.+..|..+.. +++|+.|++++|...+.
T Consensus 235 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG---LFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT---CTTCCEEECTTCBCCC-
T ss_pred cccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC---CCCccEEeccchhhhcc
Confidence 9998988888754 9999999999998877767 8999999999999999888877776 88999999998866542
Q ss_pred c-----cccCCCCcccccceeeeEEEecCCCCCCCCCC---ccccccEEEecCCCCCCCC--cccccc--CCCCCEEECc
Q 044830 380 I-----FQLDQWPVERISSVELRHLDVQSNLLQRLPFI---LSSRIRFLSVSDNKLTGEF--PSSICN--LSTIEYLNLS 447 (801)
Q Consensus 380 ~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~--~~~l~~--l~~L~~L~Ls 447 (801)
+ |......+. ...+|+.|++++|.+.+.++. .+++|++|++++|.+.... +..+.. .++|+.|+++
T Consensus 312 ~~~~~lp~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp -----CCEECTTTTT--TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred cccccccccChhhcc--cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 2 221111111 112788888888888877643 3678888998888754321 222333 2578889999
Q ss_pred CCCCcccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC--
Q 044830 448 NNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN-- 524 (801)
Q Consensus 448 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-- 524 (801)
+|++++..|..|..+++|++|++++|.+.+.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+.
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 998888888888888889999999988887665 67888888999999999888777888888888999999888876
Q ss_pred CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccc
Q 044830 525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMN 604 (801)
Q Consensus 525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~ 604 (801)
+..|..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++..+..+ ..
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~-~~------------------ 526 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQHNNLARLWKHAN-PG------------------ 526 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCGGGGSTTS-TT------------------
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhh----ccccccCEEeCCCCCccccchhhc-cC------------------
Confidence 5677888888889999999988886555444 778888999999888875322110 00
Q ss_pred cCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEe
Q 044830 605 SAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLN 684 (801)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 684 (801)
.....+..++.|+.|||++|+++...+..|+++++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 527 ----------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 590 (680)
T 1ziw_A 527 ----------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590 (680)
T ss_dssp ----------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ----------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence 0000123367899999999999966666799999999999999999987788889999999999
Q ss_pred CcCCcceecCCCCC--CCCCcCcCcCCCCCCCCCCC
Q 044830 685 LSFNQLVGPIPQGK--QFDSFQNDSFIGNLGLCGFA 718 (801)
Q Consensus 685 ls~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg~~ 718 (801)
+++|++++..|... .+..+....+.|||..|+++
T Consensus 591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999998776432 35566677788999999765
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-53 Score=490.72 Aligned_cols=518 Identities=21% Similarity=0.223 Sum_probs=379.1
Q ss_pred CCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCC
Q 044830 67 HLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTEL 146 (801)
Q Consensus 67 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L 146 (801)
++++|+|++|.+++. .|..|+.+++|++|+|++|.+++..|..|+++++|++|++++|
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--------------------- 91 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN--------------------- 91 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC---------------------
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC---------------------
Confidence 678888888887764 4566788888888888888887777777777777777777777
Q ss_pred CEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEcc
Q 044830 147 RYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLS 226 (801)
Q Consensus 147 ~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls 226 (801)
.+.+..|..|..+ ++|++|++++|.+++..+..+.++++|++|++++|.+.....+.+..+++|++|+++
T Consensus 92 --------~l~~~~~~~~~~l--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 92 --------PLIFMAETALSGP--KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp --------CCSEECTTTTSSC--TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred --------cccccChhhhccc--ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 2333344455555 566666666666665545556777777777777775544455665567788888888
Q ss_pred CccCcccCcccccCCCCCC--EEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeee
Q 044830 227 ITKFSGKIPDTIGNLRDLK--FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTG 304 (801)
Q Consensus 227 ~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 304 (801)
+|.+++..+..++.+++|+ .|++++|.+.+..|..+. ..+|++|++++|. ..+..+..+.+++...+....+.+
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT
T ss_pred cCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhcc
Confidence 8888777777788888888 888888888876666554 3678888888876 334444455444433332221110
Q ss_pred -----eCCccCcCCC--CCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCc
Q 044830 305 -----QLPLSAFNLT--QLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376 (801)
Q Consensus 305 -----~~p~~l~~l~--~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l 376 (801)
..+..+..+. +|++|++++|.+++..+..+ .+++|++|++++|.++ .+|..+.. +++|++|++++|.+
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~---l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG---LSTLKKLVLSANKF 313 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS---CTTCCEEECTTCCC
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc---cccCCEEECccCCc
Confidence 1111122221 56667777776665555444 5666777777776666 55655544 56666777766666
Q ss_pred cccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcc-ccccCCCCCEEECcCCCCcccC
Q 044830 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS-SICNLSTIEYLNLSNNSLSGMI 455 (801)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~ 455 (801)
++..+..+ ..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..
T Consensus 314 ~~~~~~~~---------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 314 ENLCQISA---------------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp SBGGGGCG---------------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CcCchhhh---------------------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 54333222 1246788888888888766554 4788899999999999988765
Q ss_pred --CccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCcc-ccCCCCCcEEeCCCCcCCCCcchhcc
Q 044830 456 --PQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPS-LANCGDLEVLDVGNNKINDAFPYWTA 532 (801)
Q Consensus 456 --~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~ 532 (801)
+..+..+++|++|++++|.+.+..|..|..+++|++|++++|++.+..+.. +.++++|++|++++|++.+..|..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 677888999999999999998888888999999999999999998776544 88899999999999999988888999
Q ss_pred CCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCcee
Q 044830 533 TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYY 612 (801)
Q Consensus 533 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 612 (801)
.+++|++|++++|++.+.... .+..+..+++|++|++++|++++..|.. +.
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~--------------------------- 497 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHA-FT--------------------------- 497 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSCCCEECTTT-TT---------------------------
T ss_pred CCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCccCccChhh-hc---------------------------
Confidence 999999999999998763221 1123478899999999999998776643 21
Q ss_pred eEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830 613 SMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 613 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 692 (801)
.++.|+.|||++|++++.+|+.+.++++| .|+|++|++++.+|..+..+++|+.|++++|++.+
T Consensus 498 ---------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 498 ---------------SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp ---------------TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ---------------cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 24578999999999999999999999999 99999999999999999999999999999999998
Q ss_pred cCCC
Q 044830 693 PIPQ 696 (801)
Q Consensus 693 ~iP~ 696 (801)
..+.
T Consensus 562 ~c~~ 565 (606)
T 3t6q_A 562 TCSN 565 (606)
T ss_dssp SGGG
T ss_pred cCCc
Confidence 7763
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-53 Score=507.20 Aligned_cols=544 Identities=21% Similarity=0.261 Sum_probs=254.0
Q ss_pred CCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCch-hHhhcCCCCCCEEeCCCccCCCCCchhhhccCC
Q 044830 91 TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTF-NNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS 169 (801)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 169 (801)
++|++|||++|.+++..|..|.++++|++|+|++|. .. ..+ |..+.++++|++|++++|.+.+..|..|..+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~--~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l-- 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY--TP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-- 96 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC--CC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC--
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC--Cc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC--
Confidence 344444444444444444444444444444444441 00 111 2333444444444444445555555556655
Q ss_pred CCccEEEccCCcCccCCCcc--CCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCC--CCC
Q 044830 170 ASLISLSLGNCFLRGEFPID--IFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNL--RDL 244 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l--~~L 244 (801)
++|++|+|++|.+.+.++.. +.++++|++|++++|.+.....+..+ .+++|++|++++|.+++..+..+..+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 66666666666666544443 66666666666666643332222222 56666666666666666666666655 666
Q ss_pred CEEEcccccCcccCcccccCCCC------CCEEEcCCCCCccccCccccCC---CCCcEeeccCeeeeeeCCccCcCCCC
Q 044830 245 KFLDLYVCYFDGQVPASLSNLKQ------LTVLNLEDNQFSGEFPDVFGNL---SKLTRISLAHLNFTGQLPLSAFNLTQ 315 (801)
Q Consensus 245 ~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~ 315 (801)
+.|+++.|.+.+..|..+..+.+ |++|++++|.+.+..+..+... .+++.+.++.+......
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~--------- 247 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF--------- 247 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS---------
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc---------
Confidence 77777777666666655555444 6667777666665555544432 34555555433221100
Q ss_pred CCEEEcccccccccCCCCC---CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCccccc
Q 044830 316 LSLLELSRNQFVGQLPCHA---SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERIS 392 (801)
Q Consensus 316 L~~L~l~~n~~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 392 (801)
..+.+.+.....+ ..++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+ ..+.
T Consensus 248 ------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~i~~~~~~~~-~~l~--- 314 (844)
T 3j0a_A 248 ------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET---LKDLKVLNLAYNKINKIADEAF-YGLD--- 314 (844)
T ss_dssp ------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS---CCCCCEEEEESCCCCEECTTTT-TTCS---
T ss_pred ------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc---CCCCCEEECCCCcCCCCChHHh-cCCC---
Confidence 0111111111111 1244555555555555444444433 4555555555555544333222 1111
Q ss_pred ceeeeEEEecCCCCCCCCC---CccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEe
Q 044830 393 SVELRHLDVQSNLLQRLPF---ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLD 469 (801)
Q Consensus 393 ~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 469 (801)
+|+.|++++|.+.+..+ ..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.|+
T Consensus 315 --~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~ 387 (844)
T 3j0a_A 315 --NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIF 387 (844)
T ss_dssp --SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEE
T ss_pred --CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhc
Confidence 12222222222221111 1133444455555544444444444555555555555554421 1144455555
Q ss_pred CCCCcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcch-hccCCCCCCEEEccCCcC
Q 044830 470 LRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPY-WTATLPRLQVLVLRSNSF 547 (801)
Q Consensus 470 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l 547 (801)
+++|+++ .+|.. ..+++.|++++|.+++... ..+.++++|+.|++++|++++..+. .+..+++|+.|++++|.+
T Consensus 388 l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 388 LSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp EESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred cCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 5555554 22322 2345555555555543211 1233455555555555555443222 233345555555555555
Q ss_pred cccCCCC-CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhh
Q 044830 548 HGPIYNN-VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEME 626 (801)
Q Consensus 548 ~~~~~~~-~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (801)
.+..+.. .+..+..+++|+.|+|++|++++..|.. |.
T Consensus 464 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~----------------------------------------- 501 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-FS----------------------------------------- 501 (844)
T ss_dssp SSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS-SS-----------------------------------------
T ss_pred ccccccccchhhhcCcccccEEECCCCcccccChhH-cc-----------------------------------------
Confidence 4322211 1122344555555555555555433321 11
Q ss_pred hhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcC
Q 044830 627 RVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQND 706 (801)
Q Consensus 627 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~ 706 (801)
.++.|+.|||++|++++.+|..+. ++|+.|+|++|++++.+|..|. +|+.|++++|++.+.++. ..|...
T Consensus 502 -~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~ 571 (844)
T 3j0a_A 502 -HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINW 571 (844)
T ss_dssp -SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHH
T ss_pred -chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHH
Confidence 123455556666665555444444 5556666666666655554432 455556666655555442 122111
Q ss_pred cCCCCCCCCCCCCCCCCCCC
Q 044830 707 SFIGNLGLCGFALTQQCSNY 726 (801)
Q Consensus 707 ~~~gn~~lcg~~l~~~c~~~ 726 (801)
...+|..+||.+....|..+
T Consensus 572 ~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 572 LNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp HHHTTTTTCCCGGGCCCSSC
T ss_pred HHhcCcccccccccCccCCc
Confidence 12334455565555677654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.9e-52 Score=479.12 Aligned_cols=528 Identities=20% Similarity=0.200 Sum_probs=328.7
Q ss_pred EEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCC
Q 044830 44 GLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLS 123 (801)
Q Consensus 44 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls 123 (801)
.++.++.+++ .+|. .+. +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus 15 ~~~c~~~~l~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPD--DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCS-SCCT--TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEccCCCcc-cCCC--CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3555666664 3333 232 6788888888887654 44467788888888888888877777777777777777777
Q ss_pred CCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc-CCCccCCCCCCCCEEecc
Q 044830 124 SDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG-EFPIDIFHFPFLRQLTLS 202 (801)
Q Consensus 124 ~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls 202 (801)
+|. +. ...|..+.++++|++|++++|.+.+..+..++++ ++|++|++++|.+.+ .+|..+++++
T Consensus 89 ~n~--l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~l~-------- 153 (606)
T 3vq2_A 89 GNP--IQ---SFSPGSFSGLTSLENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLT-------- 153 (606)
T ss_dssp TCC--CC---CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC--TTCCEEECCSSCCCCCCCCGGGGTCT--------
T ss_pred CCc--cc---ccChhhcCCcccCCEEEccCCccccccccccCCC--CCCCEEeCCCCcccceechHhHhhcC--------
Confidence 772 21 2223344445555555555544444444444444 444444444444433 2344444444
Q ss_pred CCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCC----EEEcccccCcccCcccccCCCCCCEEEcCCCCC
Q 044830 203 DNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLK----FLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQF 278 (801)
Q Consensus 203 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 278 (801)
+|++|++++|.+++..+..++.+++|+ +|++++|.+++..+..+... +|++|++++|.+
T Consensus 154 ----------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~ 216 (606)
T 3vq2_A 154 ----------------NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN 216 (606)
T ss_dssp ----------------TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred ----------------CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCcc
Confidence 444444444444443344343333322 45555555443333333222 455555555544
Q ss_pred c-cccCccccCCCCCcEeeccCeeeeee---------CCccCcCCCCCCEEEc-ccccccccCCCCCCCCCCCEEEccCC
Q 044830 279 S-GEFPDVFGNLSKLTRISLAHLNFTGQ---------LPLSAFNLTQLSLLEL-SRNQFVGQLPCHASCLPLSHLKLGGN 347 (801)
Q Consensus 279 ~-~~~p~~~~~l~~L~~L~L~~n~l~~~---------~p~~l~~l~~L~~L~l-~~n~~~~~~~~~~~~~~L~~L~L~~n 347 (801)
. +..|..+.+++.|+.+++..+.+.+. .+..+..+ .++.+++ ..+.+.+.++....+++|+.|++++|
T Consensus 217 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred chhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccccccccCCCCCEEEecCc
Confidence 3 23344444455554444433222110 00000011 1222333 22333333332113333333333333
Q ss_pred cCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCC
Q 044830 348 FLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKL 427 (801)
Q Consensus 348 ~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l 427 (801)
.+. .+| .+.. +++ ++.|++++|.+..++...+++|+.|++++|..
T Consensus 296 ~~~-~l~-~l~~---~~~------------------------------L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 296 SIK-YLE-DVPK---HFK------------------------------WQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG 340 (606)
T ss_dssp CCC-CCC-CCCT---TCC------------------------------CSEEEEESCCCSSCCCCCCSSCCEEEEESCSS
T ss_pred cch-hhh-hccc---ccc------------------------------CCEEEcccccCcccccCCCCccceeeccCCcC
Confidence 332 222 1111 333 44444444444333322356777777777755
Q ss_pred CCCCccccccCCCCCEEECcCCCCccc--CCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC-
Q 044830 428 TGEFPSSICNLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP- 504 (801)
Q Consensus 428 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 504 (801)
.+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..|
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh
Confidence 4333 466788888888888888765 37778888888999998888874 56778888889999999998887777
Q ss_pred ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCccc-CCCCCCCCCCCCCCCcEEEccCCcCCccCcHHH
Q 044830 505 PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP-IYNNVPSIKRPFPELRIIDISRNGFTGLLPARY 583 (801)
Q Consensus 505 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~ 583 (801)
..+.++++|++|++++|++.+..|..+..+++|++|++++|++.+. ++..+ ..+++|+.|++++|++++..|..
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~- 492 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF----ANTTNLTFLDLSKCQLEQISWGV- 492 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC----TTCTTCCEEECTTSCCCEECTTT-
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh----ccCCCCCEEECCCCcCCccChhh-
Confidence 6788889999999999999888888888999999999999988873 44444 78899999999999998776643
Q ss_pred HhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcC
Q 044830 584 FQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSH 663 (801)
Q Consensus 584 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~ 663 (801)
+. .++.|+.|+|++|++++.+|..++++++|+.|+|++
T Consensus 493 ~~------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 493 FD------------------------------------------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp TT------------------------------------------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred hc------------------------------------------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 11 245789999999999999999999999999999999
Q ss_pred ccccccCCccccCCC-CCCeEeCcCCcceecCCC
Q 044830 664 NILRGEIPVELTSLT-ALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 664 N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP~ 696 (801)
|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 531 N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 531 NRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999 6777799997 699999999999988774
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-51 Score=474.92 Aligned_cols=526 Identities=20% Similarity=0.180 Sum_probs=390.1
Q ss_pred cceeEeCCC---------CCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCC
Q 044830 30 WDGIICDEM---------TGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSF 100 (801)
Q Consensus 30 w~gv~c~~~---------~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~ 100 (801)
+..|.|... ...+++|||++|.+++..+. ++..+++|++|+|++|.+... .|..|+.+++|++|+|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCC
Confidence 456888642 34789999999999876666 899999999999999999775 677899999999999999
Q ss_pred CCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCC
Q 044830 101 SYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNC 180 (801)
Q Consensus 101 n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n 180 (801)
|.+++..|..|+++++|++|++++|. +. ..-+..+.++++|++|++++|.+.+.....+..+ ++|++|++++|
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~--i~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n 163 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTG--IS---SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNN 163 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSC--CS---CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSS
T ss_pred CcccccChhhhcccccccEeeccccC--cc---cCCcchhccCCcccEEECCCCcccccCcccccCC--cccCEEEcccC
Confidence 99999999999999999999999993 32 2224457899999999999999998665555557 99999999999
Q ss_pred cCccCCCccCCCCCCCC--EEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcc--
Q 044830 181 FLRGEFPIDIFHFPFLR--QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDG-- 256 (801)
Q Consensus 181 ~l~~~~~~~l~~l~~L~--~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-- 256 (801)
.+++..+..+..+++|+ .|++++| ...+..+..+....|++|++++|.. ++..+..+.+++...+....+.+
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred cccccChhhhhhhcccceeEEecCCC-ccCccChhHhhhccccccccCCchh---HHHHhhhccccchhheechhhcccc
Confidence 99988888899999999 8999999 4455556666677899999998862 33334444443333332221111
Q ss_pred ---cCcccccCCC--CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCC
Q 044830 257 ---QVPASLSNLK--QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLP 331 (801)
Q Consensus 257 ---~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 331 (801)
..+..+..+. +|+.|++++|.+.+..+..|+.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred ccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch
Confidence 1112222222 4566666666666555555666666666666666665 455556666666666666666655444
Q ss_pred CCC-CCCCCCEEEccCCcCCcccchh-hcCCCCCCCccEEEccCCCccccc--cccCCCCcccccceeeeEEEecCCCCC
Q 044830 332 CHA-SCLPLSHLKLGGNFLDGRIPSW-LFNLSTSENLVELDLSNNKLTGQI--FQLDQWPVERISSVELRHLDVQSNLLQ 407 (801)
Q Consensus 332 ~~~-~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~ 407 (801)
..+ .+++|++|++++|.+.+.+|.. +.. +++|++|++++|.+++.. +..+ ..++ +|+.|++++|.+.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~-~~l~-----~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLEN---LENLRELDLSHDDIETSDCCNLQL-RNLS-----HLQSLNLSYNEPL 389 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTT---CTTCCEEECCSSCCCEEEESTTTT-TTCT-----TCCEEECCSCSCE
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhc---cCcCCEEECCCCccccccCcchhc-ccCC-----CCCEEECCCCcCC
Confidence 444 5566666666666665555443 222 566666666666665432 1111 1222 5666666666655
Q ss_pred CCCCC---ccccccEEEecCCCCCCCCcc-ccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccccc---CC
Q 044830 408 RLPFI---LSSRIRFLSVSDNKLTGEFPS-SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS---IP 480 (801)
Q Consensus 408 ~~~~~---~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~ 480 (801)
+.++. .+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 54332 367899999999999876654 488899999999999999988888899999999999999998863 33
Q ss_pred ccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 044830 481 QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKR 560 (801)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 560 (801)
..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..+..++.| .|++++|++++..+..+ .
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~----~ 544 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL----P 544 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH----H
T ss_pred hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc----c
Confidence 568889999999999999998888999999999999999999999999999999999 99999999987665444 6
Q ss_pred CCCCCcEEEccCCcCCccCcHHHH
Q 044830 561 PFPELRIIDISRNGFTGLLPARYF 584 (801)
Q Consensus 561 ~l~~L~~LdLs~N~l~~~~p~~~~ 584 (801)
.+++|+.|++++|++.+..+...+
T Consensus 545 ~l~~L~~L~l~~N~~~c~c~~~~~ 568 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLDCTCSNIYF 568 (606)
T ss_dssp HHHTSSEEECTTCCEECSGGGHHH
T ss_pred cCCCCCEEeCCCCCccccCCcHHH
Confidence 788999999999999987775444
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.9e-50 Score=463.67 Aligned_cols=528 Identities=20% Similarity=0.180 Sum_probs=435.0
Q ss_pred CCccc----ceeEeCC---------CCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCC
Q 044830 26 DCCSW----DGIICDE---------MTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTK 92 (801)
Q Consensus 26 ~~c~w----~gv~c~~---------~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 92 (801)
+.|.| ..|.|.. ...++++|+|+++.+.+..+. .+..+++|++|+|++|.+++. .|..|+.+++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~ 81 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHH 81 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTT
T ss_pred CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhh
Confidence 34555 3577753 235799999999999877666 899999999999999999875 5677999999
Q ss_pred CCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCC-CCchhhhccCCCC
Q 044830 93 LTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFS-VVPSSLLNLSSAS 171 (801)
Q Consensus 93 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~~~ 171 (801)
|++|+|++|.+++..|..|+++++|++|++++|. +. ...+..++++++|++|++++|.+.+ .+|..+.++ ++
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~ 154 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK--LA---SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TN 154 (606)
T ss_dssp CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC--CC---CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TT
T ss_pred cCEeECCCCcccccChhhcCCcccCCEEEccCCc--cc---cccccccCCCCCCCEEeCCCCcccceechHhHhhc--CC
Confidence 9999999999999889999999999999999994 32 2222458899999999999999987 569999999 99
Q ss_pred ccEEEccCCcCccCCCccCCCCCCCC----EEeccCCCCCccCCCCCCCCCCCCEEEccCccCc-ccCcccccCCCCCCE
Q 044830 172 LISLSLGNCFLRGEFPIDIFHFPFLR----QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFS-GKIPDTIGNLRDLKF 246 (801)
Q Consensus 172 L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~ 246 (801)
|++|++++|.+++..+..+..+++|+ +|++++|.+. ...+..+...+|++|++++|.++ +..|..+.+++.|+.
T Consensus 155 L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred CCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 99999999999998888887776654 8999999543 33333344558999999999987 456788999999999
Q ss_pred EEcccccCccc------CcccccCCC--CCCEEEc-CCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCC
Q 044830 247 LDLYVCYFDGQ------VPASLSNLK--QLTVLNL-EDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS 317 (801)
Q Consensus 247 L~L~~n~l~~~------~p~~l~~l~--~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 317 (801)
+++..+.+.+. .+..+..+. .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~ 310 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQ 310 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCS
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCC
Confidence 99876654321 112222222 4566777 67778877777 888999999999999986 456 788899999
Q ss_pred EEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccc--cccCCCCccccccee
Q 044830 318 LLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQI--FQLDQWPVERISSVE 395 (801)
Q Consensus 318 ~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~~~~ 395 (801)
+|++++|.+ +.+|.. .+++|++|++++|...+.+ .+. .+++|++|++++|.+++.. +... ..++ .
T Consensus 311 ~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~---~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~-----~ 377 (606)
T 3vq2_A 311 SLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKV---ALPSLSYLDLSRNALSFSGCCSYSD-LGTN-----S 377 (606)
T ss_dssp EEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCC---CCTTCCEEECCSSCEEEEEECCHHH-HCCS-----C
T ss_pred EEEcccccC-cccccC-CCCccceeeccCCcCccch--hhc---cCCCCCEEECcCCccCCCcchhhhh-ccCC-----c
Confidence 999999999 577755 8899999999999665444 223 4789999999999987652 2222 2222 7
Q ss_pred eeEEEecCCCCCCCCC--CccccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC
Q 044830 396 LRHLDVQSNLLQRLPF--ILSSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK 472 (801)
Q Consensus 396 L~~L~l~~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 472 (801)
|+.|++++|.+.+.+. ..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 378 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred ccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 8999999999887763 337899999999999998877 6889999999999999999999999999999999999999
Q ss_pred Ccccc-cCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830 473 NQFRG-SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI 551 (801)
Q Consensus 473 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 551 (801)
|.+.+ .+|..|..+++|++|++++|++++..|..+.++++|++|++++|++.+..|..+..+++|++|++++|+++. +
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~ 536 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-S 536 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-E
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-c
Confidence 99998 478899999999999999999999999999999999999999999999999999999999999999999984 3
Q ss_pred CCCCCCCCCCCC-CCcEEEccCCcCCccCcHHHHh
Q 044830 552 YNNVPSIKRPFP-ELRIIDISRNGFTGLLPARYFQ 585 (801)
Q Consensus 552 ~~~~~~~~~~l~-~L~~LdLs~N~l~~~~p~~~~~ 585 (801)
|..+ ..++ +|+.|++++|++.+..+...+.
T Consensus 537 p~~~----~~l~~~L~~l~l~~N~~~c~c~~~~~~ 567 (606)
T 3vq2_A 537 KGIL----QHFPKSLAFFNLTNNSVACICEHQKFL 567 (606)
T ss_dssp ESCG----GGSCTTCCEEECCSCCCCCSSTTHHHH
T ss_pred CHhH----hhhcccCcEEEccCCCcccCCccHHHH
Confidence 3333 6776 6999999999999877765543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-50 Score=468.41 Aligned_cols=480 Identities=19% Similarity=0.267 Sum_probs=329.7
Q ss_pred CCCCCCCCCCCCCCCccc---ceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCC--------
Q 044830 13 VTYPKTKSWNKDGDCCSW---DGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGT-------- 81 (801)
Q Consensus 13 ~~~~~l~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~-------- 81 (801)
..++..++|+.+.+||.| +||.|+.. +||++|+|+++++.|.+++ +++++++|++|+|++|.+...
T Consensus 52 ~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~ 128 (636)
T 4eco_A 52 FGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKG 128 (636)
T ss_dssp ------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTS
T ss_pred cCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccccccc
Confidence 345567799988999999 99999865 8999999999999999998 999999999999999975211
Q ss_pred ---cccccccCCCCCCEEeCCCCCCccccccCCcC-CCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCC--Ccc
Q 044830 82 ---KISSNFGQFTKLTHLNLSFSYFSGIVPSQISR-LSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLD--NVQ 155 (801)
Q Consensus 82 ---~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~-l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~--~~~ 155 (801)
.+|... +..|+ ++++++.+.+.+|..+.. +..+..+++.... .. ......++.+.+. .|.
T Consensus 129 ~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~--~~---------~~~~~~l~~l~l~~~~n~ 194 (636)
T 4eco_A 129 ISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS--IK---------KSSRITLKDTQIGQLSNN 194 (636)
T ss_dssp BCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC--CC---------CCCCCCCCTTTTTCCSCE
T ss_pred cccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc--cc---------cccccchhhhhhccccCC
Confidence 133322 45666 788888777777766653 2222233332210 00 0111223333333 466
Q ss_pred CCCCCchhhhccCCCCccEEEccCCcCccC-----------------CCccCC--CCCCCCEEeccCCCCCccCCCCCC-
Q 044830 156 MFSVVPSSLLNLSSASLISLSLGNCFLRGE-----------------FPIDIF--HFPFLRQLTLSDNGLLTGNLPTSN- 215 (801)
Q Consensus 156 ~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~~- 215 (801)
+++ +|..++++ ++|++|+|++|.+++. +|..++ ++++|++|++++| .+.+.+|..+
T Consensus 195 l~~-ip~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~ 270 (636)
T 4eco_A 195 ITF-VSKAVMRL--TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLK 270 (636)
T ss_dssp EEE-ECGGGGGC--TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTT
T ss_pred Ccc-CCHHHhcc--cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHh
Confidence 777 78888888 8888888888888875 788888 8888888888888 4556667655
Q ss_pred CCCCCCEEEccCcc-Ccc-cCcccccCC------CCCCEEEcccccCcccCcc--cccCCCCCCEEEcCCCCCccccCcc
Q 044830 216 WSSPLRILDLSITK-FSG-KIPDTIGNL------RDLKFLDLYVCYFDGQVPA--SLSNLKQLTVLNLEDNQFSGEFPDV 285 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~ 285 (801)
.+++|++|++++|. +++ .+|..++++ ++|++|++++|.++ .+|. .++++++|++|++++|.+.+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 78888888888887 777 778777765 78888888888887 6777 78888888888888888887777 7
Q ss_pred ccCCCCCcEeeccCeeeeeeCCccCcCCCC-CCEEEcccccccccCCCCC-C--CCCCCEEEccCCcCCcccchhhcCCC
Q 044830 286 FGNLSKLTRISLAHLNFTGQLPLSAFNLTQ-LSLLELSRNQFVGQLPCHA-S--CLPLSHLKLGGNFLDGRIPSWLFNLS 361 (801)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~n~~~~~~~~~~-~--~~~L~~L~L~~n~l~~~~~~~~~~l~ 361 (801)
++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+ . +++|++|++++|.+.+.+|..+....
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 788888888888888887 67777778877 888888888877 555544 2 33677777777777766666554100
Q ss_pred ----CCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccc-cc
Q 044830 362 ----TSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSS-IC 436 (801)
Q Consensus 362 ----~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~ 436 (801)
.+++|++|++++|.++ .+|.... ..+++|++|++++|+++ .+|.. +.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~ 478 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQIS-KFPKELF--------------------------STGSPLSSINLMGNMLT-EIPKNSLK 478 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCC-SCCTHHH--------------------------HTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred cccccCCCCCEEECcCCccC-cCCHHHH--------------------------ccCCCCCEEECCCCCCC-CcCHHHhc
Confidence 1445666666666555 2222110 11345666666666666 33332 22
Q ss_pred c-------CCCCCEEECcCCCCcccCCcccc--CCCCCCEEeCCCCcccccCCccccCCCCccEEEC------CCCcCCC
Q 044830 437 N-------LSTIEYLNLSNNSLSGMIPQCLA--NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL------NDNELEG 501 (801)
Q Consensus 437 ~-------l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~ 501 (801)
. +++|++|++++|.++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|++.+
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 2 226777777777776 4555554 66777777777777775 6666667777777777 4566777
Q ss_pred CCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCccc
Q 044830 502 KLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP 550 (801)
Q Consensus 502 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 550 (801)
.+|..+.++++|++|++++|++ +.+|..+. ++|+.|++++|++...
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred cChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 7777787888888888888888 55565544 6788888888876643
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=468.34 Aligned_cols=521 Identities=21% Similarity=0.180 Sum_probs=434.6
Q ss_pred cccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCcccc
Q 044830 28 CSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIV 107 (801)
Q Consensus 28 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 107 (801)
|.|++|.+ ...++++|||++|.+.+..+. ++..+++|++|+|++|.+...-.|..|+++++|++|+|++|.+++..
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 56777776 457899999999999877666 89999999999999997654423678999999999999999999999
Q ss_pred ccCCcCCCCCCEEeCCCCcCCCccccCchhH--hhcCCCCCCEEeCCCccCCCCCc-hhhhccCCCCccEEEccCCcCcc
Q 044830 108 PSQISRLSKLVALDLSSDIPRTKFEQHTFNN--LAKNLTELRYLLLDNVQMFSVVP-SSLLNLSSASLISLSLGNCFLRG 184 (801)
Q Consensus 108 p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~~~L~~L~L~~n~l~~ 184 (801)
|..|+++++|++|+|++|. +. +..+. .+.++++|++|++++|.+.+..+ ..|.++ ++|++|+|++|.+++
T Consensus 90 p~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCG--LS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQIFL 162 (844)
T ss_dssp TTSSCSCSSCCCEECTTCC--CS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESSCCCC
T ss_pred HhHccCCcccCEeeCcCCC--CC---cccccCccccccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCCcCCe
Confidence 9999999999999999993 32 22232 37899999999999999988765 679999 999999999999999
Q ss_pred CCCccCCCC--CCCCEEeccCCCCCccCCCCCC-CCC------CCCEEEccCccCcccCcccccCC---CCCCEEEcccc
Q 044830 185 EFPIDIFHF--PFLRQLTLSDNGLLTGNLPTSN-WSS------PLRILDLSITKFSGKIPDTIGNL---RDLKFLDLYVC 252 (801)
Q Consensus 185 ~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~~-~~~------~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n 252 (801)
..+..+..+ ++|+.|++++|. ..+..+... .+. .|++|++++|.+++..+..+... ..++.|.+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 888888877 899999999994 444444332 333 49999999999988888776643 67888888733
Q ss_pred ---------cCcccCcccccCC--CCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEc
Q 044830 253 ---------YFDGQVPASLSNL--KQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLEL 321 (801)
Q Consensus 253 ---------~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 321 (801)
.+.+..+..|..+ ++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 3333334445554 78999999999999888999999999999999999999988989999999999999
Q ss_pred ccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEE
Q 044830 322 SRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLD 400 (801)
Q Consensus 322 ~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 400 (801)
++|.+.+..+..+ .+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++. +. .+ +++.++
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~---l~~L~~L~Ls~N~l~~i-~~-----~~-----~L~~L~ 387 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF---LEKLQTLDLRDNALTTI-HF-----IP-----SIPDIF 387 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS---CCCCCEEEEETCCSCCC-SS-----CC-----SCSEEE
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC---CCCCCEEECCCCCCCcc-cC-----CC-----Ccchhc
Confidence 9999988777777 8999999999999998666666655 89999999999998742 21 12 789999
Q ss_pred ecCCCCCCCCCCccccccEEEecCCCCCCCC-ccccccCCCCCEEECcCCCCcccCCc-cccCCCCCCEEeCCCCccc--
Q 044830 401 VQSNLLQRLPFILSSRIRFLSVSDNKLTGEF-PSSICNLSTIEYLNLSNNSLSGMIPQ-CLANFDSLSLLDLRKNQFR-- 476 (801)
Q Consensus 401 l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~-- 476 (801)
+++|.+..++.. ..+++.|++++|.+++.. +..+..+++|++|++++|.+++..+. .+..+++|++|++++|.++
T Consensus 388 l~~N~l~~l~~~-~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 388 LSGNKLVTLPKI-NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp EESCCCCCCCCC-CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred cCCCCccccccc-ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 999999977543 678999999999998642 33456899999999999999865443 4566889999999999997
Q ss_pred ---ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCC
Q 044830 477 ---GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553 (801)
Q Consensus 477 ---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 553 (801)
+..+..|..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+. ++|+.|+|++|++++..+.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 34456788999999999999999999999999999999999999999988877766 8999999999999988765
Q ss_pred CCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830 554 NVPSIKRPFPELRIIDISRNGFTGLLPARYF 584 (801)
Q Consensus 554 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 584 (801)
. +.+|+.|++++|++.+..+...|
T Consensus 545 ~-------~~~L~~l~l~~Np~~C~c~~~~f 568 (844)
T 3j0a_A 545 V-------FVSLSVLDITHNKFICECELSTF 568 (844)
T ss_dssp C-------CSSCCEEEEEEECCCCSSSCCSH
T ss_pred H-------hCCcCEEEecCCCcccccccHHH
Confidence 4 35899999999999877664433
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-47 Score=434.01 Aligned_cols=499 Identities=19% Similarity=0.217 Sum_probs=287.6
Q ss_pred CcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccc
Q 044830 27 CCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGI 106 (801)
Q Consensus 27 ~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 106 (801)
.|.|.|+ |+. ++++++ .+|+ .+. ++|++|+|++|.+++. .|..|+.+++|++|+|++|.+++.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EEC----------CCCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 5999998 854 344443 3444 332 6888888888888765 456688888888888888888877
Q ss_pred cccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc-C
Q 044830 107 VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG-E 185 (801)
Q Consensus 107 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~-~ 185 (801)
.|..|+++++|++|++++|. +.+..+..+..+ ++|++|++++|.+++ .
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~-----------------------------l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNH-----------------------------LSSLSSSWFGPL--SSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSC-----------------------------CCSCCHHHHTTC--TTCCEEECTTCCCSSSC
T ss_pred ChhhccccccCCEEECCCCc-----------------------------cCccCHHHhccC--CCCcEEECCCCcccccc
Confidence 77788888888888888772 233334444444 555555555555554 2
Q ss_pred CCccCCCCCCCCEEeccCCCCCccCCC-C-CCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCccccc
Q 044830 186 FPIDIFHFPFLRQLTLSDNGLLTGNLP-T-SNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLS 263 (801)
Q Consensus 186 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~-~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 263 (801)
.|..+.++++|++|++++|.... .++ . +..+++|++|++++|.+++..|..++.+++|++|+++.|.+....+..+.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH
T ss_pred hhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHh
Confidence 34456666666666666663222 222 1 22566666666666666666666666677777777776666532222234
Q ss_pred CCCCCCEEEcCCCCCcccc--C-ccccCCCCCcEeeccCeeeeeeCCc----cCcCCCCCCEEEcccccccccCCCCCCC
Q 044830 264 NLKQLTVLNLEDNQFSGEF--P-DVFGNLSKLTRISLAHLNFTGQLPL----SAFNLTQLSLLELSRNQFVGQLPCHASC 336 (801)
Q Consensus 264 ~l~~L~~L~L~~n~l~~~~--p-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 336 (801)
.+++|++|++++|.+.+.. | .....+++|+.|++++|.+.+..+. .+..+++|+.+++++|.+.+.....
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~--- 270 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--- 270 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc---
Confidence 5666777777776666431 1 1223455666666666666543322 2334556666666666554321100
Q ss_pred CCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCcccc
Q 044830 337 LPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSR 416 (801)
Q Consensus 337 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 416 (801)
+.....+..+++|+.|++.++.+..... +. .+. . ......+
T Consensus 271 -----------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~--~l~------------------~-~~~~~~~ 311 (549)
T 2z81_A 271 -----------------PSESDVVSELGKVETVTIRRLHIPQFYL-FY--DLS------------------T-VYSLLEK 311 (549)
T ss_dssp -----------------CCTTTCCCCCTTCCEEEEESCBCSCGGG-SC--CCC------------------H-HHHHSTT
T ss_pred -----------------ccchhhhhhhcccccccccccccchhhh-cc--cch------------------h-hhhhccc
Confidence 0000011124455555555554321100 00 000 0 0001234
Q ss_pred ccEEEecCCCCCCCCcccc-ccCCCCCEEECcCCCCcccCC---ccccCCCCCCEEeCCCCcccccCCccccCCCCccEE
Q 044830 417 IRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIP---QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL 492 (801)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 492 (801)
|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+| ..++.+++|++|++++|++++..+
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------ 378 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------------ 378 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------------
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------------
Confidence 555555555554 334333 345555555555555554432 224444555555555555543221
Q ss_pred ECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccC
Q 044830 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR 572 (801)
Q Consensus 493 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~ 572 (801)
.+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+. +..+ .++|++||+++
T Consensus 379 ----------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~------~~~L~~L~Ls~ 440 (549)
T 2z81_A 379 ----------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI------PQTLEVLDVSN 440 (549)
T ss_dssp ----------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS------CTTCSEEECCS
T ss_pred ----------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh------cCCceEEECCC
Confidence 0022444445555555555444 2344444555555555555554421 1111 25678888888
Q ss_pred CcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccc
Q 044830 573 NGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK 652 (801)
Q Consensus 573 N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 652 (801)
|++++.++ .++.|++|||++|+++ .+|. .+.
T Consensus 441 N~l~~~~~-----------------------------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~ 471 (549)
T 2z81_A 441 NNLDSFSL-----------------------------------------------FLPRLQELYISRNKLK-TLPD-ASL 471 (549)
T ss_dssp SCCSCCCC-----------------------------------------------CCTTCCEEECCSSCCS-SCCC-GGG
T ss_pred CChhhhcc-----------------------------------------------cCChhcEEECCCCccC-cCCC-ccc
Confidence 88775421 1356788899999888 5665 467
Q ss_pred cccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830 653 LSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 653 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (801)
+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.+|.
T Consensus 472 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 89999999999999998888899999999999999999998884
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-48 Score=455.01 Aligned_cols=476 Identities=19% Similarity=0.274 Sum_probs=289.5
Q ss_pred cccccCCCCCCCCCCCCC-----CC--ccc------------ceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCC
Q 044830 8 HCDAAVTYPKTKSWNKDG-----DC--CSW------------DGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHL 68 (801)
Q Consensus 8 ~~~~~~~~~~l~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L 68 (801)
-.|++...+ +|+.+. +| |.| .||.|+. .++|++|+|+++++.|.+++ +++++++|
T Consensus 276 ~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L 349 (876)
T 4ecn_A 276 AIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPD--AIGQLTEL 349 (876)
T ss_dssp HHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECG--GGGGCTTC
T ss_pred HHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCch--HHhccccc
Confidence 344444433 897543 56 999 9999986 58999999999999999998 99999999
Q ss_pred CeeeC-CCCCCCCCcccccccCC-CCCCE--------------EeC-CCCCCcccc-----------ccCCcCCCCCCEE
Q 044830 69 QKLNL-ACNDFNGTKISSNFGQF-TKLTH--------------LNL-SFSYFSGIV-----------PSQISRLSKLVAL 120 (801)
Q Consensus 69 ~~L~L-s~n~~~~~~~~~~~~~l-~~L~~--------------L~L-s~n~i~~~~-----------p~~l~~l~~L~~L 120 (801)
++|+| ++|.+.+. .+...... ..+.. ++. ....+.+.. +........++.+
T Consensus 350 ~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l 428 (876)
T 4ecn_A 350 KVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428 (876)
T ss_dssp CEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTT
T ss_pred eEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhc
Confidence 99999 88876544 11000000 00000 000 000000000 0000111112222
Q ss_pred eCCC--CcCCCccccCchhHhhcCCCCCCEEeCCCccCCC-----------------CCchhhh--ccCCCCccEEEccC
Q 044830 121 DLSS--DIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFS-----------------VVPSSLL--NLSSASLISLSLGN 179 (801)
Q Consensus 121 ~Ls~--n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-----------------~~~~~l~--~l~~~~L~~L~L~~ 179 (801)
.+.. | .+. + +|..+.++++|+.|++++|.+++ .+|..++ ++ ++|++|+|++
T Consensus 429 ~l~~~~N--~L~---~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~~L~~L~Ls~ 500 (876)
T 4ecn_A 429 QIGNLTN--RIT---F-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL--KDLTDVELYN 500 (876)
T ss_dssp TTTCCSC--EEE---E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--TTCCEEEEES
T ss_pred eeccccC--ccc---c-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC--CCCCEEECcC
Confidence 2211 1 111 1 44555555555555555555555 3566655 66 6777777777
Q ss_pred CcCccCCCccCCCCCCCCEEeccCCCCCcc-CCCCC--------CCCCCCCEEEccCccCcccCcc--cccCCCCCCEEE
Q 044830 180 CFLRGEFPIDIFHFPFLRQLTLSDNGLLTG-NLPTS--------NWSSPLRILDLSITKFSGKIPD--TIGNLRDLKFLD 248 (801)
Q Consensus 180 n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~~~~~--------~~~~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~ 248 (801)
|.+.+.+|..+.++++|++|++++|+.+++ .+|.. ..+++|++|++++|.++ .+|. .++++++|+.|+
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 777777777777777777777777742444 33321 24457777777777777 6676 777777777777
Q ss_pred cccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCC-CcEeeccCeeeeeeCCccCcCCCC--CCEEEccccc
Q 044830 249 LYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSK-LTRISLAHLNFTGQLPLSAFNLTQ--LSLLELSRNQ 325 (801)
Q Consensus 249 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~l~~n~ 325 (801)
+++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++. |+.|++++|.
T Consensus 580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence 7777777 666 6777777777777777777 66777777777 777777777777 56666655543 7777777777
Q ss_pred ccccCCCCC------CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEE
Q 044830 326 FVGQLPCHA------SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHL 399 (801)
Q Consensus 326 ~~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L 399 (801)
+.+.+|... .+++|+.|++++|.++ .+|..++. .+++|+.|++++|.++ .+|........
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~--~l~~L~~L~Ls~N~L~-~ip~~~~~~~~---------- 721 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA--TGSPISTIILSNNLMT-SIPENSLKPKD---------- 721 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH--TTCCCSEEECCSCCCS-CCCTTSSSCTT----------
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc--cCCCCCEEECCCCcCC-ccChHHhcccc----------
Confidence 776554322 3346777777777776 55655542 1566777777777665 33332200000
Q ss_pred EecCCCCCCCCCCccccccEEEecCCCCCCCCccccc--cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCC-----
Q 044830 400 DVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC--NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRK----- 472 (801)
Q Consensus 400 ~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~----- 472 (801)
.....+++|+.|++++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 722 ---------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 722 ---------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp ---------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ---------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 00011347777777777777 5666665 77778888888887776 566777777788887766
Q ss_pred -CcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhc
Q 044830 473 -NQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT 531 (801)
Q Consensus 473 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 531 (801)
|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 455555555555555566666666555 34554433 355555555555544443333
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-46 Score=430.47 Aligned_cols=499 Identities=23% Similarity=0.247 Sum_probs=280.4
Q ss_pred CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830 66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE 145 (801)
Q Consensus 66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 145 (801)
+++++|+|++|.+++. .+..|..+++|++|+|++|.+++..|..|+++++|++|++++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-------------------- 86 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-------------------- 86 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--------------------
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC--------------------
Confidence 4677777777777654 3445777777777777777777666666777777777777666
Q ss_pred CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEE
Q 044830 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILD 224 (801)
Q Consensus 146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~ 224 (801)
.+....+..|..+ ++|++|++++|.+++..+..++++++|++|++++|.+....+|..+ .+++|++|+
T Consensus 87 ---------~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 87 ---------PIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp ---------CCCEECTTTTTTC--TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ---------cCCccCHhhhcCc--cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 2333333444444 5555555555555544333455666666666666643332334433 455555555
Q ss_pred ccCccCcccCcccccCCCCC----CEEEcccccCcccCcccccCCCCCCEEEcCCCCCcc-ccCccccCCCCCcEeeccC
Q 044830 225 LSITKFSGKIPDTIGNLRDL----KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSG-EFPDVFGNLSKLTRISLAH 299 (801)
Q Consensus 225 Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~ 299 (801)
+++|.+++..+..++.+++| +.|++++|.+.+..|..+..+ +|++|++++|.... .++..+..+++++.+.+..
T Consensus 156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecc
Confidence 55555555555555555555 566666666665555555444 56666666653321 2344455555555554432
Q ss_pred eeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCC-cCCcccchhhcCCCCCCCccEEEccCCCccc
Q 044830 300 LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGN-FLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378 (801)
Q Consensus 300 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 378 (801)
..+.. ...++.+ ....+.+ .....++.++++++ .+.+.+|..+.. +++|+.|++++|.+++
T Consensus 235 ~~~~~--------~~~l~~~--~~~~~~~-----l~~l~l~~l~l~~~~~~~~~~~~~~~~---l~~L~~L~l~~~~l~~ 296 (570)
T 2z63_A 235 GEFRN--------EGNLEKF--DKSALEG-----LCNLTIEEFRLAYLDYYLDDIIDLFNC---LTNVSSFSLVSVTIER 296 (570)
T ss_dssp EECCC--------CSSCEEC--CTTTTGG-----GGGSEEEEEEEEETTEEESCSTTTTGG---GTTCSEEEEESCEECS
T ss_pred ccccC--------chhhhhc--chhhhcc-----ccccchhhhhhhcchhhhhhchhhhcC---cCcccEEEecCccchh
Confidence 22110 0111100 0000000 00012344455544 444445555544 5666666666666552
Q ss_pred cccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccC--C
Q 044830 379 QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI--P 456 (801)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~--~ 456 (801)
+|.... . . .++.|++++|.+..++...+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +
T Consensus 297 -l~~~~~-~-----~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~ 366 (570)
T 2z63_A 297 -VKDFSY-N-----F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS 366 (570)
T ss_dssp -CCBCCS-C-----C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE
T ss_pred -hhhhhc-c-----C-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc
Confidence 332220 0 0 344444444444433333345556666666655544333 45555666666666555432 4
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchhccCCC
Q 044830 457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYWTATLP 535 (801)
Q Consensus 457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 535 (801)
..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+.++++|++|++++|++.+..|..+
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---- 441 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---- 441 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT----
T ss_pred ccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh----
Confidence 4455555555555555555533222 5555555555555555544333 234444445555555444444444433
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC-ccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeE
Q 044830 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT-GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSM 614 (801)
Q Consensus 536 ~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 614 (801)
..+++|++|++++|+++ +.+|.. +
T Consensus 442 ------------------------~~l~~L~~L~l~~n~l~~~~~p~~-~------------------------------ 466 (570)
T 2z63_A 442 ------------------------NGLSSLEVLKMAGNSFQENFLPDI-F------------------------------ 466 (570)
T ss_dssp ------------------------TTCTTCCEEECTTCEEGGGEECSC-C------------------------------
T ss_pred ------------------------hcCCcCcEEECcCCcCccccchhh-h------------------------------
Confidence 45555666666666554 234421 1
Q ss_pred EEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecC
Q 044830 615 ILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPI 694 (801)
Q Consensus 615 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 694 (801)
..++.|++|||++|++++..|..++.+++|+.|+|++|++++..|..+.++++|+.|++++|+++|.+
T Consensus 467 ------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 467 ------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp ------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ------------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 11456788889999998888999999999999999999999988889999999999999999999999
Q ss_pred CCC
Q 044830 695 PQG 697 (801)
Q Consensus 695 P~~ 697 (801)
|..
T Consensus 535 ~~~ 537 (570)
T 2z63_A 535 PRI 537 (570)
T ss_dssp TTT
T ss_pred cch
Confidence 864
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=412.16 Aligned_cols=492 Identities=21% Similarity=0.188 Sum_probs=368.3
Q ss_pred CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 249 (801)
+++++|++++|.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45777777777777666666777777777777777433222222336777777777777777666677777888888888
Q ss_pred ccccCcccCcccccCCCCCCEEEcCCCCCcc-ccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCC----CEEEcccc
Q 044830 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSG-EFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL----SLLELSRN 324 (801)
Q Consensus 250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~l~~n 324 (801)
++|.+.+..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|.+.+..+..+..+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8887776555567778888888888887776 357778888888888888888777666667766666 77888888
Q ss_pred cccccCCCCCCCCCCCEEEccCCcCCc-ccchhhcCCCCCCCccEEEccCCCcc--ccccccCCCCcccccceeeeEEEe
Q 044830 325 QFVGQLPCHASCLPLSHLKLGGNFLDG-RIPSWLFNLSTSENLVELDLSNNKLT--GQIFQLDQWPVERISSVELRHLDV 401 (801)
Q Consensus 325 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~--~~~~~~~~~~~~~~~~~~L~~L~l 401 (801)
.+.+..+..+...+|+.|++++|.... .++..+.. ++.++.+.+....+. +.+.......+..+....++.+++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG---LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHT---TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcC---ccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 887766666655578888887775432 24444444 455555544332221 111111112233444457788888
Q ss_pred cCC-CCCCCCC---CccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccc
Q 044830 402 QSN-LLQRLPF---ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477 (801)
Q Consensus 402 ~~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 477 (801)
+.+ .+.+..+ ..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 877 4444433 23689999999999998 578888888 9999999999998 5554 478899999999999887
Q ss_pred cCCccccCCCCccEEECCCCcCCCCC--CccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCC
Q 044830 478 SIPQIFSKCYDLVALNLNDNELEGKL--PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNV 555 (801)
Q Consensus 478 ~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 555 (801)
..+. ..+++|++|++++|.+++.. |..+.++++|++|++++|++.+..+. +..+++|++|++++|.+.+..+..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~- 415 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS- 415 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-
Confidence 6665 67899999999999998654 67888999999999999999877665 889999999999999998765522
Q ss_pred CCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEE
Q 044830 556 PSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTI 635 (801)
Q Consensus 556 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 635 (801)
.+..+++|++|++++|.+++..|.. +. .++.|+.|
T Consensus 416 --~~~~l~~L~~L~l~~n~l~~~~~~~-~~------------------------------------------~l~~L~~L 450 (570)
T 2z63_A 416 --VFLSLRNLIYLDISHTHTRVAFNGI-FN------------------------------------------GLSSLEVL 450 (570)
T ss_dssp --TTTTCTTCCEEECTTSCCEECCTTT-TT------------------------------------------TCTTCCEE
T ss_pred --hhhcCCCCCEEeCcCCcccccchhh-hh------------------------------------------cCCcCcEE
Confidence 2478999999999999998776643 11 24678999
Q ss_pred EccCCeee-eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-CCCCCcCcCcCCCCCC
Q 044830 636 DLSNNRFE-GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-KQFDSFQNDSFIGNLG 713 (801)
Q Consensus 636 dLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~ 713 (801)
++++|+++ +.+|..++.+++|+.|+|++|++++..|..+..+++|++|++++|++++..|.. .++..+....+.+|+.
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99999998 689999999999999999999999999999999999999999999999877754 3455556666778876
Q ss_pred CCCCC
Q 044830 714 LCGFA 718 (801)
Q Consensus 714 lcg~~ 718 (801)
-|..|
T Consensus 531 ~~~~~ 535 (570)
T 2z63_A 531 DCSCP 535 (570)
T ss_dssp CCCTT
T ss_pred cCCCc
Confidence 66543
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-43 Score=408.79 Aligned_cols=516 Identities=23% Similarity=0.214 Sum_probs=345.4
Q ss_pred CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830 66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE 145 (801)
Q Consensus 66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 145 (801)
+++++|||++|+|+.. .+..|.++++|++|+|++|.|+++.|.+|.++++|++|+|++|.
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~------------------- 111 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------------------- 111 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------------
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-------------------
Confidence 4688888888888764 34568888888888888888887777778888888888888772
Q ss_pred CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEE
Q 044830 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILD 224 (801)
Q Consensus 146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~ 224 (801)
+.+..+..|.++ ++|++|+|++|.+++..+..++++++|++|++++|.+.....|... .+++|++|+
T Consensus 112 ----------l~~l~~~~f~~L--~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 112 ----------IQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp ----------CCEECGGGGTTC--TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ----------CCCCCHHHhcCC--CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 223334445555 5566666666666555445566666666666666644444444444 556666666
Q ss_pred ccCccCcccCcccccCCCCC----CEEEcccccCcccCcccccCCCCCCEEEcCCCCCccc-cCccccCCCCCcEeeccC
Q 044830 225 LSITKFSGKIPDTIGNLRDL----KFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTRISLAH 299 (801)
Q Consensus 225 Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~ 299 (801)
+++|.+++..+..+..+.++ ..++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++...+..
T Consensus 180 L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 180 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred ccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 66666665555555544332 356666666654333322 333455566665544322 223444555555444432
Q ss_pred eeeee------eCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccC
Q 044830 300 LNFTG------QLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSN 373 (801)
Q Consensus 300 n~l~~------~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~ 373 (801)
+.... .....+.... .+....+..+.................+++.+++.+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~-----------------------~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLC-----------------------NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGG-----------------------GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccccccccccccccccc-----------------------chhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 21110 0111111122 222222222211111111111111244566666666
Q ss_pred CCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcc
Q 044830 374 NKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSG 453 (801)
Q Consensus 374 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 453 (801)
+.+........ . ..++.|++.+|.+...+...+..++.+++..|.+... .....+++|+.|++++|.+..
T Consensus 316 ~~~~~~~~~~~---~-----~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 316 VTIERVKDFSY---N-----FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp CEEEECGGGGS---C-----CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBE
T ss_pred ccccccccccc---c-----hhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccchhhcccccc
Confidence 65543211110 1 1566677777777666666677888899988887643 234578899999999998853
Q ss_pred --cCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchh
Q 044830 454 --MIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYW 530 (801)
Q Consensus 454 --~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~ 530 (801)
..+..+..+.+|+++++..+.... .+..+..+++|+.+++.+|......+ ..+..+++++.++++.|.+.+..+..
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred ccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccc
Confidence 455666778899999999998874 45667889999999999888765544 46788999999999999999999999
Q ss_pred ccCCCCCCEEEccCCcCcc-cCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCC
Q 044830 531 TATLPRLQVLVLRSNSFHG-PIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYD 609 (801)
Q Consensus 531 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 609 (801)
+..++.++.|++++|.+.. ..|.. +..+++|++|||++|++++..|.. |.+
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~----~~~l~~L~~L~Ls~N~L~~l~~~~-f~~----------------------- 516 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTA-FNS----------------------- 516 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTT-TTT-----------------------
T ss_pred cccchhhhhhhhhhcccccccCchh----hhhccccCEEECCCCccCCcChHH-HcC-----------------------
Confidence 9999999999999997544 34443 478999999999999999877743 222
Q ss_pred ceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCC-CCCCeEeCcCC
Q 044830 610 QYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSL-TALSVLNLSFN 688 (801)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N 688 (801)
++.|++|+|++|+|++..|..|+.+++|++|+|++|+|++..|..+..+ ++|++|++++|
T Consensus 517 -------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 517 -------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp -------------------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred -------------------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 4568999999999999999999999999999999999999999999998 68999999999
Q ss_pred cceecCC
Q 044830 689 QLVGPIP 695 (801)
Q Consensus 689 ~l~g~iP 695 (801)
++++...
T Consensus 578 p~~C~C~ 584 (635)
T 4g8a_A 578 DFACTCE 584 (635)
T ss_dssp CBCCSGG
T ss_pred CCcccCC
Confidence 9988654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-46 Score=429.01 Aligned_cols=452 Identities=19% Similarity=0.238 Sum_probs=284.6
Q ss_pred CCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccC------CC------CCchhhhccCCCCccEEEccCCcC
Q 044830 115 SKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQM------FS------VVPSSLLNLSSASLISLSLGNCFL 182 (801)
Q Consensus 115 ~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~------~~------~~~~~l~~l~~~~L~~L~L~~n~l 182 (801)
.+++.|+|+++ .+. +.+|..++++++|++|++++|.+ .+ .+|... + ..++ ++++++.+
T Consensus 81 ~~V~~L~L~~~--~l~---g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~--~~l~-l~l~~~~l 150 (636)
T 4eco_A 81 GRVTGLSLEGF--GAS---GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K--QKMR-MHYQKTFV 150 (636)
T ss_dssp CCEEEEECTTS--CCE---EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H--HHHH-THHHHHHT
T ss_pred CCEEEEEecCc--ccC---CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--H--HHHH-hhHHHhhh
Confidence 46777888877 333 56777778888888888887754 22 333333 2 4455 66666666
Q ss_pred ccCCCccCCC-CCCCCEEeccCCCCCccCCCCCCCCCCCCEEEc--cCccCcccCcccccCCCCCCEEEcccccCccc--
Q 044830 183 RGEFPIDIFH-FPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDL--SITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQ-- 257 (801)
Q Consensus 183 ~~~~~~~l~~-l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L--s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-- 257 (801)
.+.+|..+.. +..+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|++|++++|.+++.
T Consensus 151 ~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~ 223 (636)
T 4eco_A 151 DYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223 (636)
T ss_dssp CCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGB
T ss_pred ccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccc
Confidence 6665555442 1112222222111100 01111222222 2456666 677777777777777777777764
Q ss_pred ---------------Cccccc--CCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCee-eee-eCCccCcCC-----
Q 044830 258 ---------------VPASLS--NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLN-FTG-QLPLSAFNL----- 313 (801)
Q Consensus 258 ---------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l----- 313 (801)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+
T Consensus 224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence 666666 67777777777777666666666666677777777666 665 566555544
Q ss_pred -CCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccch--hhcCCCCCCCccEEEccCCCccccccccCCCCccc
Q 044830 314 -TQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPS--WLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVER 390 (801)
Q Consensus 314 -~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 390 (801)
++|++|++++|.++ .+|. .+.. +++|++|++++|.++|.+| .+ .
T Consensus 304 l~~L~~L~L~~n~l~------------------------~ip~~~~l~~---l~~L~~L~L~~N~l~g~ip-~~-~---- 350 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK------------------------TFPVETSLQK---MKKLGMLECLYNQLEGKLP-AF-G---- 350 (636)
T ss_dssp GGTCCEEECCSSCCS------------------------SCCCHHHHTT---CTTCCEEECCSCCCEEECC-CC-E----
T ss_pred CCCCCEEECCCCcCC------------------------ccCchhhhcc---CCCCCEEeCcCCcCccchh-hh-C----
Confidence 55555555555544 4444 4444 5566666666666655554 11 1
Q ss_pred ccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCC-CCEEECcCCCCcccCCccccCCC--CCCE
Q 044830 391 ISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLST-IEYLNLSNNSLSGMIPQCLANFD--SLSL 467 (801)
Q Consensus 391 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~--~L~~ 467 (801)
.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|++
T Consensus 351 ----------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 351 ----------------------SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp ----------------------EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred ----------------------CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 1234555555666555 55666666666 777777777776 5565555543 6777
Q ss_pred EeCCCCcccccCCcccc-------CCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC-----
Q 044830 468 LDLRKNQFRGSIPQIFS-------KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP----- 535 (801)
Q Consensus 468 L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 535 (801)
|++++|.+.+..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|++....+..+....
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 77777777766666666 566777777777777743333455577777777777777643333333222
Q ss_pred --CCCEEEccCCcCcccCCCCCCCCCC--CCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCce
Q 044830 536 --RLQVLVLRSNSFHGPIYNNVPSIKR--PFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQY 611 (801)
Q Consensus 536 --~L~~L~L~~N~l~~~~~~~~~~~~~--~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 611 (801)
+|++|+|++|+++ .+|..+ . .+++|+.|+|++|++++ +|..+.
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~----~~~~l~~L~~L~Ls~N~l~~-ip~~~~--------------------------- 533 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDF----RATTLPYLVGIDLSYNSFSK-FPTQPL--------------------------- 533 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGG----STTTCTTCCEEECCSSCCSS-CCCGGG---------------------------
T ss_pred cCCccEEECcCCcCC-ccChhh----hhccCCCcCEEECCCCCCCC-cChhhh---------------------------
Confidence 7777777777776 333322 3 67788888888888876 664421
Q ss_pred eeEEEEeccchhhhhhhcccceEEEc------cCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeC
Q 044830 612 YSMILTYKGVDLEMERVLNIFTTIDL------SNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNL 685 (801)
Q Consensus 612 ~~~~~~~~~~~~~~~~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l 685 (801)
.++.|+.|+| ++|++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.|++
T Consensus 534 ----------------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 534 ----------------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI 594 (636)
T ss_dssp ----------------GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred ----------------cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence 1345677777 56888999999999999999999999999 68888876 79999999
Q ss_pred cCCccee
Q 044830 686 SFNQLVG 692 (801)
Q Consensus 686 s~N~l~g 692 (801)
++|++..
T Consensus 595 s~N~l~~ 601 (636)
T 4eco_A 595 KDNPNIS 601 (636)
T ss_dssp CSCTTCE
T ss_pred cCCCCcc
Confidence 9998874
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.9e-44 Score=408.81 Aligned_cols=498 Identities=18% Similarity=0.181 Sum_probs=320.5
Q ss_pred CCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCC
Q 044830 68 LQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELR 147 (801)
Q Consensus 68 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~ 147 (801)
..+.+++++.++. +|..+. ++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 7 ~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n---------------------- 60 (549)
T 2z81_A 7 SGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS---------------------- 60 (549)
T ss_dssp TSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS----------------------
T ss_pred CceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC----------------------
Confidence 3345777777764 555443 78888888888888777777888888888887776
Q ss_pred EEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEcc
Q 044830 148 YLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLS 226 (801)
Q Consensus 148 ~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls 226 (801)
.+.+..|..|..+ ++|++|++++|.+++..+..++++++|++|++++|.+.....+..+ .+++|++|+++
T Consensus 61 -------~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 61 -------RINTIEGDAFYSL--GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp -------CCCEECTTTTTTC--TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred -------CcCccChhhcccc--ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 3344455667777 8889999999988877776788888888888888854433333333 56666666666
Q ss_pred CccCcccCc-ccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeee
Q 044830 227 ITKFSGKIP-DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQ 305 (801)
Q Consensus 227 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 305 (801)
+|.+.+.+| ..+.++++|++|++++|.+.+..|..+..+++|++|+++.|.+....+..+..+++|++|++++|.+.+.
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 665333333 4566666666666666666665566666666666666666555422222223445555555555544432
Q ss_pred CCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcC-CCCCCCccEEEccCCCccccccccC
Q 044830 306 LPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFN-LSTSENLVELDLSNNKLTGQIFQLD 384 (801)
Q Consensus 306 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~~~~~ 384 (801)
... ..+....+++|+.|++++|.+++..+..+.. +..+++|+.+++++|.+.+.. .+.
T Consensus 212 ~~~--------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~-~~~ 270 (549)
T 2z81_A 212 QFS--------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG-DFN 270 (549)
T ss_dssp CCC--------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS-CCC
T ss_pred ccc--------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc-ccc
Confidence 100 0001113455666666666665544433321 122567777777777665321 000
Q ss_pred CCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCC
Q 044830 385 QWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDS 464 (801)
Q Consensus 385 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 464 (801)
... ........+++.|++.++.+.... .+ ..++..+...++
T Consensus 271 ~~~--------------------~~~~~~l~~L~~L~l~~~~i~~~~--~~-----------------~~l~~~~~~~~~ 311 (549)
T 2z81_A 271 PSE--------------------SDVVSELGKVETVTIRRLHIPQFY--LF-----------------YDLSTVYSLLEK 311 (549)
T ss_dssp CCT--------------------TTCCCCCTTCCEEEEESCBCSCGG--GS-----------------CCCCHHHHHSTT
T ss_pred ccc--------------------hhhhhhhcccccccccccccchhh--hc-----------------ccchhhhhhccc
Confidence 000 000111234444444444332110 00 011222333456
Q ss_pred CCEEeCCCCcccccCCccc-cCCCCccEEECCCCcCCCCCC---ccccCCCCCcEEeCCCCcCCCCcc--hhccCCCCCC
Q 044830 465 LSLLDLRKNQFRGSIPQIF-SKCYDLVALNLNDNELEGKLP---PSLANCGDLEVLDVGNNKINDAFP--YWTATLPRLQ 538 (801)
Q Consensus 465 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~ 538 (801)
|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+| ..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 777777777776 455444 467778888888887776553 336778899999999999987643 5688999999
Q ss_pred EEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEe
Q 044830 539 VLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTY 618 (801)
Q Consensus 539 ~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (801)
+|++++|++++ +|. .+..+++|++|++++|++++ +|...
T Consensus 391 ~L~Ls~N~l~~-lp~----~~~~~~~L~~L~Ls~N~l~~-l~~~~----------------------------------- 429 (549)
T 2z81_A 391 SLDISRNTFHP-MPD----SCQWPEKMRFLNLSSTGIRV-VKTCI----------------------------------- 429 (549)
T ss_dssp EEECTTCCCCC-CCS----CCCCCTTCCEEECTTSCCSC-CCTTS-----------------------------------
T ss_pred EEECCCCCCcc-CCh----hhcccccccEEECCCCCccc-ccchh-----------------------------------
Confidence 99999999983 443 34788999999999999873 34221
Q ss_pred ccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-
Q 044830 619 KGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG- 697 (801)
Q Consensus 619 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~- 697 (801)
.+.|++|||++|++++.+ +.+++|+.|+|++|+++ .+|. ...+++|++|++++|++++.+|..
T Consensus 430 ----------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 430 ----------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ----------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ----------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 245799999999999753 57899999999999999 6776 578999999999999999987753
Q ss_pred CCCCCcCcCcCCCCCCCCCCC
Q 044830 698 KQFDSFQNDSFIGNLGLCGFA 718 (801)
Q Consensus 698 ~~~~~~~~~~~~gn~~lcg~~ 718 (801)
..+..+......||+..|..|
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHH
T ss_pred hcCcccCEEEecCCCccCCCc
Confidence 345566666788998887654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=401.04 Aligned_cols=463 Identities=19% Similarity=0.168 Sum_probs=309.8
Q ss_pred CeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCE
Q 044830 69 QKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRY 148 (801)
Q Consensus 69 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~ 148 (801)
++||+++|.++. +|..+. ++|++|+|++|.+++..|..|.++++|++|++++|. +. +..|..+.++++|++
T Consensus 3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQ---YLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CC---EEEGGGGTTCTTCCE
T ss_pred ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc--cC---CcChHHhhcccCCCE
Confidence 578899998874 565555 889999999999888777788888888888888883 32 334566777777777
Q ss_pred EeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc-CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCC--CEEEc
Q 044830 149 LLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG-EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPL--RILDL 225 (801)
Q Consensus 149 L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L--~~L~L 225 (801)
|++++|.+.. +|.. .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+... .+..+++| ++|++
T Consensus 74 L~Ls~N~l~~-lp~~--~l--~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 74 LDLSHNKLVK-ISCH--PT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLL 145 (520)
T ss_dssp EECCSSCCCE-EECC--CC--CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEE
T ss_pred EecCCCceee-cCcc--cc--CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEe
Confidence 7777777763 3333 44 667777777777665 3556666666666666666633221 11133344 55555
Q ss_pred cCccC--cccCcccccCCC-CCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCee-
Q 044830 226 SITKF--SGKIPDTIGNLR-DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLN- 301 (801)
Q Consensus 226 s~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~- 301 (801)
++|.+ .+..|..+..+. ....+++++|.+.+.++. ..+..+++|+.+++++|.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----------------------~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD-----------------------VSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC-----------------------CCCTTCSEEEECCEEECCS
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhh-----------------------hhhhcccceeecccccccc
Confidence 55555 444444444333 122334444444332221 233444444444444443
Q ss_pred ------eeeeCCccCcCCCCCCEEEcccccccccCCCC----CCCCCCCEEEccCCcCCcccchhhcCC--CCCCCccEE
Q 044830 302 ------FTGQLPLSAFNLTQLSLLELSRNQFVGQLPCH----ASCLPLSHLKLGGNFLDGRIPSWLFNL--STSENLVEL 369 (801)
Q Consensus 302 ------l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~~~~L~~L 369 (801)
+.+.+| .+..+++|+.|++++|.+.+..... ...++|++|++++|.++|.+|..++.. ..+++|+.+
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 333333 3444455555555544443321110 012355555555555555555554211 236667777
Q ss_pred EccCCCccccccc-cCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCCCEEECc
Q 044830 370 DLSNNKLTGQIFQ-LDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLS 447 (801)
Q Consensus 370 ~Ls~n~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 447 (801)
++++|.+ .+|. .. .. .+...+++.|++++|.+..... ..+++|++|++++|++++..|..++.+++|++|+++
T Consensus 282 ~l~~n~~--~~p~~~~-~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 282 QVVSDVF--GFPQSYI-YE--IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEECCC--CSCTHHH-HH--HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred cccccce--ecchhhh-hc--ccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 7777766 2331 10 00 0011257777777777776664 567899999999999999899999999999999999
Q ss_pred CCCCcc--cCCccccCCCCCCEEeCCCCcccccCCc-cccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830 448 NNSLSG--MIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524 (801)
Q Consensus 448 ~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 524 (801)
+|.+++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|++.
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 999996 5667899999999999999999985665 488899999999999999988777664 79999999999998
Q ss_pred CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830 525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF 584 (801)
Q Consensus 525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 584 (801)
.+|..+..+++|++|++++|++++ +|.. .+..+++|+.|++++|++++..+...+
T Consensus 435 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 435 -SIPKQVVKLEALQELNVASNQLKS-VPDG---IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred -ccchhhhcCCCCCEEECCCCcCCc-cCHH---HhccCCcccEEECcCCCCcccCCchHH
Confidence 667777799999999999999985 3332 247899999999999999988775554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-44 Score=409.01 Aligned_cols=464 Identities=20% Similarity=0.191 Sum_probs=301.8
Q ss_pred CEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCC
Q 044830 118 VALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLR 197 (801)
Q Consensus 118 ~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 197 (801)
++||+++|. +. .+|..+. ++|++|++++|.+.+..|..|..+ ++|++|+|++|.+++..|..+.++++|+
T Consensus 3 ~~l~ls~n~--l~----~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNG--LI----HVPKDLS--QKTTILNISQNYISELWTSDILSL--SKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSC--CS----SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTC--TTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCC--cc----ccccccc--ccccEEECCCCcccccChhhcccc--ccccEEecCCCccCCcChHHhhcccCCC
Confidence 467777773 22 2333222 677777777777777777777777 7777777777777776677777777777
Q ss_pred EEeccCCCCCccCCCCCCCCCCCCEEEccCccCcc-cCcccccCCCCCCEEEcccccCcccCcccccCCCCC--CEEEcC
Q 044830 198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSG-KIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQL--TVLNLE 274 (801)
Q Consensus 198 ~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~ 274 (801)
+|++++|.+. .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|+++
T Consensus 73 ~L~Ls~N~l~--~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLV--KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp EEECCSSCCC--EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred EEecCCCcee--ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 7777777443 24443 56666666666666664 345666666666666666666654 234445555 666666
Q ss_pred CCCC--ccccCccccCCC-CCcEeeccCeeeeeeCCc-cCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCC
Q 044830 275 DNQF--SGEFPDVFGNLS-KLTRISLAHLNFTGQLPL-SAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350 (801)
Q Consensus 275 ~n~l--~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~ 350 (801)
+|.+ .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|...... ..+.
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----------------~~~~ 210 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC----------------SYFL 210 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT----------------HHHH
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc----------------ceee
Confidence 6665 445555444433 122334444443332222 2233444444444444300000 0022
Q ss_pred cccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCC
Q 044830 351 GRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE 430 (801)
Q Consensus 351 ~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 430 (801)
+.+| .+.. +++|+.|++++|.+++..+.... +....++|++|++++|.+++.
T Consensus 211 ~~~~-~l~~---l~~L~~L~l~~~~l~~~~~~~~~------------------------~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 211 SILA-KLQT---NPKLSNLTLNNIETTWNSFIRIL------------------------QLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp HHHH-GGGG---CTTCCEEEEEEEEEEHHHHHHHH------------------------HHHHTSSCSEEEEEEEEEESC
T ss_pred cchh-hhcc---ccchhhccccccccCHHHHHHHH------------------------HHhhhCcccEEEeecccccCc
Confidence 2222 2222 45555555555544322111000 000123677777777777777
Q ss_pred Ccccc-----ccCCCCCEEECcCCCCcccCC-ccccCC---CCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCC
Q 044830 431 FPSSI-----CNLSTIEYLNLSNNSLSGMIP-QCLANF---DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEG 501 (801)
Q Consensus 431 ~~~~l-----~~l~~L~~L~Ls~n~i~~~~~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 501 (801)
+|..+ ..++.|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence 77766 7777788888888877 344 344433 56888888888775432 12567888888888888888
Q ss_pred CCCccccCCCCCcEEeCCCCcCCC--CcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccC
Q 044830 502 KLPPSLANCGDLEVLDVGNNKIND--AFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLL 579 (801)
Q Consensus 502 ~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 579 (801)
..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++.+.+|.. .+..+++|+.|++++|++++.+
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCGGG
T ss_pred hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCcch
Confidence 788888888888888888888876 45677888889999999999888755433 2367889999999999998766
Q ss_pred cHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceE
Q 044830 580 PARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLL 659 (801)
Q Consensus 580 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 659 (801)
|..+ .+.|+.|||++|+++ .+|..+..+++|+.|
T Consensus 416 ~~~l---------------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 416 FRCL---------------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp GGSC---------------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred hhhh---------------------------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 6431 146889999999999 788888899999999
Q ss_pred eCcCccccccCCcc-ccCCCCCCeEeCcCCcceecCC
Q 044830 660 NFSHNILRGEIPVE-LTSLTALSVLNLSFNQLVGPIP 695 (801)
Q Consensus 660 ~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP 695 (801)
+|++|++++ +|.. +..+++|++|++++|++++.+|
T Consensus 450 ~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 450 NVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999994 6655 9999999999999999998776
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.7e-43 Score=409.28 Aligned_cols=334 Identities=21% Similarity=0.254 Sum_probs=224.1
Q ss_pred CcCccCCCccCCCCCCCCEEeccCCCCCcc-----------------CCCCCC---CCCCCCEEEccCccCcccCccccc
Q 044830 180 CFLRGEFPIDIFHFPFLRQLTLSDNGLLTG-----------------NLPTSN---WSSPLRILDLSITKFSGKIPDTIG 239 (801)
Q Consensus 180 n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-----------------~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (801)
|.+++ +|..++++++|++|+|++|. +++ .+|..+ .+++|++|+|++|.+.+.+|..++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 44554 55555566666666666663 333 255544 577788888888887778888888
Q ss_pred CCCCCCEEEccccc-Ccc-cCcccccCCC-------CCCEEEcCCCCCccccCc--cccCCCCCcEeeccCeeeeeeCCc
Q 044830 240 NLRDLKFLDLYVCY-FDG-QVPASLSNLK-------QLTVLNLEDNQFSGEFPD--VFGNLSKLTRISLAHLNFTGQLPL 308 (801)
Q Consensus 240 ~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~ 308 (801)
++++|+.|++++|. +++ .+|..+++++ +|++|++++|.+. .+|. .++.+++|++|++++|.+. .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 88888888888887 777 6776655544 8899999988888 7777 8888888999999988888 777
Q ss_pred cCcCCCCCCEEEcccccccccCCCCC-CCCC-CCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCC
Q 044830 309 SAFNLTQLSLLELSRNQFVGQLPCHA-SCLP-LSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQW 386 (801)
Q Consensus 309 ~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~-L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~ 386 (801)
.+..+++|+.|++++|.+. .+|..+ .+++ |++|++++|.++ .+|..+... ..++|+.|++++|.+++.+|... .
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~-~~~~L~~L~Ls~N~l~g~ip~l~-~ 665 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNIS-C 665 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT-CSSCEEEEECCSSCTTTTSSSCS-S
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc-ccCCCCEEECcCCcCCCccccch-h
Confidence 7888888999999998888 666555 7777 999999999888 777665542 13458999999998887665443 1
Q ss_pred CcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcccc-ccCCCCCEEECcCCCCcccCCccccC----
Q 044830 387 PVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIPQCLAN---- 461 (801)
Q Consensus 387 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~---- 461 (801)
.... ...++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+|..+..
T Consensus 666 ~l~~---------------------~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 666 SMDD---------------------YKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp CTTT---------------------CCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred hhcc---------------------ccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 1110 01246777777777777 344443 46777888888888777 44433222
Q ss_pred ----CCCCCEEeCCCCcccccCCcccc--CCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC------CcCCCCcch
Q 044830 462 ----FDSLSLLDLRKNQFRGSIPQIFS--KCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN------NKINDAFPY 529 (801)
Q Consensus 462 ----l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~------n~i~~~~~~ 529 (801)
+++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++ |++.+.+|.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 126666777766666 5555554 66666666666666665 566666666666666655 333444444
Q ss_pred hccCCCCCCEEEccCCcC
Q 044830 530 WTATLPRLQVLVLRSNSF 547 (801)
Q Consensus 530 ~~~~l~~L~~L~L~~N~l 547 (801)
.+..+++|+.|+|++|++
T Consensus 801 ~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TGGGCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEECCCCCC
Confidence 444444444444444444
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.4e-40 Score=384.00 Aligned_cols=543 Identities=21% Similarity=0.182 Sum_probs=411.5
Q ss_pred CCCCCCCCCC----CCCccc----ceeEeCCC---------CCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCC
Q 044830 15 YPKTKSWNKD----GDCCSW----DGIICDEM---------TGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACND 77 (801)
Q Consensus 15 ~~~l~~w~~~----~~~c~w----~gv~c~~~---------~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~ 77 (801)
...+++|+.+ -+.|.+ ..|.|... +..+++|||++|.+++..+. +|..+++|++|+|++|.
T Consensus 10 ~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~ 87 (635)
T 4g8a_A 10 DDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCE 87 (635)
T ss_dssp ---------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCC
T ss_pred cchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCc
Confidence 3456666542 134654 35789642 24789999999999865545 89999999999999999
Q ss_pred CCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCC
Q 044830 78 FNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMF 157 (801)
Q Consensus 78 ~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 157 (801)
|+.. .+..|.++++|++|+|++|++++..+..|.++++|++|++++|. +. ...+..++++++|++|++++|.+.
T Consensus 88 i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~--l~---~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 88 IQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN--LA---SLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp CCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC--CC---CSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc--CC---CCChhhhhcCcccCeeccccCccc
Confidence 9875 45679999999999999999998877889999999999999993 32 222345789999999999999997
Q ss_pred CC-CchhhhccCCCCccEEEccCCcCccCCCccCCCCCC----CCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcc
Q 044830 158 SV-VPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPF----LRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSG 232 (801)
Q Consensus 158 ~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 232 (801)
.. .|..+..+ ++|++|++++|.+++..+..+..+.+ +..++++.|.+. ...+.......++.+++++|....
T Consensus 162 ~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 162 SFKLPEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCCCGGGGGC--TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSSH
T ss_pred cCCCchhhccc--hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcccccchhhhhhhhhcccccc
Confidence 64 57888999 99999999999999888877765544 347888888443 223333455567888998886653
Q ss_pred c-CcccccCCCCCCEEEcccccCc------ccCcccccCCCCCCEEEcCCCCCc---cccCccccCCCCCcEeeccCeee
Q 044830 233 K-IPDTIGNLRDLKFLDLYVCYFD------GQVPASLSNLKQLTVLNLEDNQFS---GEFPDVFGNLSKLTRISLAHLNF 302 (801)
Q Consensus 233 ~-~~~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l 302 (801)
. .+..+..+..++...+..+... ......+..+..+...++..+... ...+..+..+.+++.+++.++.+
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence 3 3455777888887776554332 223344455556666665544332 22344566778899999999888
Q ss_pred eeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccc
Q 044830 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ 382 (801)
Q Consensus 303 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~ 382 (801)
.... .+.....|+.|++.+|.+.+..+. .+..|+.+++..|.+....+ .. .+++|+.|++++|.+......
T Consensus 319 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~l~l~~n~~~~~~~--~~---~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 319 ERVK--DFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFS--EV---DLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EECG--GGGSCCCCSEEEEESCEESSCCCC--BCTTCCEEEEESCCSCCBCC--CC---BCTTCCEEECCSSCCBEEEEC
T ss_pred cccc--ccccchhhhhhhcccccccCcCcc--cchhhhhcccccccCCCCcc--cc---cccccccchhhcccccccccc
Confidence 7543 355678899999999988754332 46778999999888764322 22 378999999999987632211
Q ss_pred cCCCCcccccceeeeEEEecCCCCCCCCCC--ccccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccc
Q 044830 383 LDQWPVERISSVELRHLDVQSNLLQRLPFI--LSSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCL 459 (801)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l 459 (801)
+.......+++.+++..+.....+.. .+++|+.+++..+......+ ..+..++.++.++++.|.+.+..+..+
T Consensus 390 ----~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 390 ----SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp ----CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ----ccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 11111223788899988877665533 37899999999988776544 467889999999999999999999999
Q ss_pred cCCCCCCEEeCCCCcc-cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCC
Q 044830 460 ANFDSLSLLDLRKNQF-RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQ 538 (801)
Q Consensus 460 ~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 538 (801)
..++.|++|++++|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 9999999999999975 446788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCcccCCCCCCCCCCCC-CCCcEEEccCCcCCccCcHHHHh
Q 044830 539 VLVLRSNSFHGPIYNNVPSIKRPF-PELRIIDISRNGFTGLLPARYFQ 585 (801)
Q Consensus 539 ~L~L~~N~l~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~~p~~~~~ 585 (801)
+|+|++|++++..+..+ ..+ ++|++|+|++|++...-....|.
T Consensus 546 ~L~Ls~N~l~~~~~~~l----~~l~~~L~~L~L~~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQEL----QHFPSSLAFLNLTQNDFACTCEHQSFL 589 (635)
T ss_dssp EEECTTSCCCBCCSSCT----TCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred EEECCCCcCCCCCHHHH----HhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence 99999999999887766 566 68999999999998765544443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.3e-41 Score=384.53 Aligned_cols=417 Identities=20% Similarity=0.229 Sum_probs=265.5
Q ss_pred CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccc-cCccccCCCCCcE
Q 044830 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGE-FPDVFGNLSKLTR 294 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~ 294 (801)
.+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+.+. .|..|+++++|++
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 4444444444444444444444555555555555555554 23333 455555555555555442 2345555555555
Q ss_pred eeccCeeeeeeCCccCcCCCCC--CEEEcccccc--cccCCCCC-CCC-CCCEEEccCCcCCcccchhhcCCCCCCCccE
Q 044830 295 ISLAHLNFTGQLPLSAFNLTQL--SLLELSRNQF--VGQLPCHA-SCL-PLSHLKLGGNFLDGRIPSWLFNLSTSENLVE 368 (801)
Q Consensus 295 L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~~--~~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~ 368 (801)
|++++|.+.+. .+..+++| ++|++++|.+ ++..+..+ .+. ..-.+++++|.+.+.++..... .+++|+.
T Consensus 151 L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~--~l~~L~~ 225 (562)
T 3a79_B 151 LGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN--ALGHLQL 225 (562)
T ss_dssp EEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEES--SEEEEEE
T ss_pred EecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccc--ccceEEE
Confidence 55555554431 22333333 5555555555 43333333 111 1113455555555444433221 2455666
Q ss_pred EEccCCCc-----cccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCcccc-----cc
Q 044830 369 LDLSNNKL-----TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSI-----CN 437 (801)
Q Consensus 369 L~Ls~n~l-----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l-----~~ 437 (801)
+++++|.. .+.++.. .....+....+..++++++.+.+.+. ...++|++|++++|.+++.+|..+ ..
T Consensus 226 L~l~~n~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~ 303 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSEL--TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHH--HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred ecccccccccchHHHHHHHH--hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhccccc
Confidence 66666531 1111111 11111111122222333222222221 113489999999999998888877 66
Q ss_pred CCCCCEEECcCCCCcccCC-ccccC---CCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCC
Q 044830 438 LSTIEYLNLSNNSLSGMIP-QCLAN---FDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDL 513 (801)
Q Consensus 438 l~~L~~L~Ls~n~i~~~~~-~~l~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 513 (801)
++.|+.++++.+.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|.+++..|..+.++++|
T Consensus 304 L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 379 (562)
T 3a79_B 304 LKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379 (562)
T ss_dssp CCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred chheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC
Confidence 77777777777776 344 22222 257999999999886332 12678999999999999999899999999999
Q ss_pred cEEeCCCCcCCCC--cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhh
Q 044830 514 EVLDVGNNKINDA--FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM 591 (801)
Q Consensus 514 ~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~ 591 (801)
++|++++|++.+. .|..+..+++|++|++++|++.+.++.. .+..+++|+.|++++|++++.+|..+
T Consensus 380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l-------- 448 (562)
T 3a79_B 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAESILVLNLSSNMLTGSVFRCL-------- 448 (562)
T ss_dssp CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCCEEECCSSCCCGGGGSSC--------
T ss_pred CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcccCCEEECCCCCCCcchhhhh--------
Confidence 9999999999874 3567899999999999999999855543 23678999999999999987665321
Q ss_pred ccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCC
Q 044830 592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP 671 (801)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 671 (801)
.+.|+.|||++|+++ .+|..+..+++|+.|+|++|+++ .+|
T Consensus 449 -------------------------------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 449 -------------------------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489 (562)
T ss_dssp -------------------------------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCC
T ss_pred -------------------------------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCC
Confidence 146899999999999 67887889999999999999999 566
Q ss_pred cc-ccCCCCCCeEeCcCCcceecCCC
Q 044830 672 VE-LTSLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 672 ~~-l~~l~~L~~L~ls~N~l~g~iP~ 696 (801)
.. +..+++|+.|++++|++.|.+|.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcch
Confidence 65 99999999999999999998874
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-40 Score=379.25 Aligned_cols=464 Identities=18% Similarity=0.176 Sum_probs=323.1
Q ss_pred EEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeC
Q 044830 43 IGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDL 122 (801)
Q Consensus 43 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~L 122 (801)
+.+|++++++++ +|. .+. ++|++|+|++|.+++. .+..|+.+++|++|+|++|.+++..|..|.++++|++|++
T Consensus 34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 678888888874 554 333 7888888888888765 4567888888888888888888877888888888888888
Q ss_pred CCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccC-CCccCCCCCCCCEEec
Q 044830 123 SSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGE-FPIDIFHFPFLRQLTL 201 (801)
Q Consensus 123 s~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L 201 (801)
++|. +.. +|.. .+ ++|++|++++|.+++. +|..++++++|++|++
T Consensus 108 s~N~-----------------------------l~~-lp~~--~l--~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 108 SHNR-----------------------------LQN-ISCC--PM--ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp TTSC-----------------------------CCE-ECSC--CC--TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred CCCc-----------------------------CCc-cCcc--cc--ccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 8872 111 1111 34 8899999999998873 4678889999999999
Q ss_pred cCCCCCccCCCCCCCCCCC--CEEEccCccC--cccCcccccCCC--CCCEEEcccccCcccCcc-cccCCCCCCEEEcC
Q 044830 202 SDNGLLTGNLPTSNWSSPL--RILDLSITKF--SGKIPDTIGNLR--DLKFLDLYVCYFDGQVPA-SLSNLKQLTVLNLE 274 (801)
Q Consensus 202 s~n~~~~~~~~~~~~~~~L--~~L~Ls~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~ 274 (801)
++|.+.... +..+++| ++|++++|.+ ++..|..+..+. .+ .++++.|.+.+.++. .+..+++|+.++++
T Consensus 154 ~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 154 SAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp ECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred CCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccc
Confidence 998553321 2234444 8888888887 667777776654 22 456677766654443 34566777777777
Q ss_pred CCCCc----cccCccccCCCCCcEeeccCeeeeeeCCcc---CcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCC
Q 044830 275 DNQFS----GEFPDVFGNLSKLTRISLAHLNFTGQLPLS---AFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGN 347 (801)
Q Consensus 275 ~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n 347 (801)
+|... ......+..+++|+.+++.++.+.+..... ....++|++|++++|.+++.+|.
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~--------------- 294 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR--------------- 294 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC---------------
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc---------------
Confidence 76421 011234566667777777666655321100 01223566666666665554443
Q ss_pred cCCcccchhhcCC--CCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecC
Q 044830 348 FLDGRIPSWLFNL--STSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSD 424 (801)
Q Consensus 348 ~l~~~~~~~~~~l--~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~ 424 (801)
.++.. ..++.|+.+++..+.+ .+|... ....+....++.|++++|.+..... ..+++|++|++++
T Consensus 295 --------~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 295 --------EEFTYSETALKSLMIEHVKNQVF--LFSKEA--LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp --------CCCCCCSCSCCEEEEEEEEECCC--SSCHHH--HHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred --------hhhhcccccchheehhhccccee--ecChhh--hhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 33111 1133333334433333 111000 0000011146666666666655554 4578999999999
Q ss_pred CCCCCCCccccccCCCCCEEECcCCCCccc--CCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccEEECCCCcCCC
Q 044830 425 NKLTGEFPSSICNLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVALNLNDNELEG 501 (801)
Q Consensus 425 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 501 (801)
|.+++..|..+..+++|++|++++|++++. +|..+.++++|++|++++|.+++.+| ..+..+++|++|++++|++++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 999998999999999999999999999963 35678999999999999999998555 458889999999999999988
Q ss_pred CCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcH
Q 044830 502 KLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPA 581 (801)
Q Consensus 502 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~ 581 (801)
..|..+. ++|++|++++|+++. +|..+..+++|++|++++|++++ +|.. .+..+++|+.|++++|++.+..|.
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~---~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDG---VFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCTT---STTTCTTCCCEECCSCCBCCCHHH
T ss_pred chhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCHH---HHhcCCCCCEEEecCCCcCCCcch
Confidence 7776554 799999999999974 56666699999999999999985 3333 247899999999999999988886
Q ss_pred HHH
Q 044830 582 RYF 584 (801)
Q Consensus 582 ~~~ 584 (801)
..+
T Consensus 516 ~~~ 518 (562)
T 3a79_B 516 IRY 518 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-38 Score=350.51 Aligned_cols=365 Identities=21% Similarity=0.228 Sum_probs=266.6
Q ss_pred CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCC-CCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEE
Q 044830 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNL-PTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFL 247 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 247 (801)
+++++|+|++|.+++..|..+.++++|++|++++|.+ .+.+ +..+ .+++|++|++++|.+++..|..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 6788888888888877777888888888888888843 3233 2223 77888888888888887778888888888888
Q ss_pred EcccccCcccCccc--ccCCCCCCEEEcCCCCCccccCcc-ccCCCCCcEeeccCeeeeeeCCccCcCC--CCCCEEEcc
Q 044830 248 DLYVCYFDGQVPAS--LSNLKQLTVLNLEDNQFSGEFPDV-FGNLSKLTRISLAHLNFTGQLPLSAFNL--TQLSLLELS 322 (801)
Q Consensus 248 ~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~l~ 322 (801)
++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 88888887655544 788888888888888888776765 7788888888888888887777776654 677888888
Q ss_pred cccccccCCCC---------CCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccc
Q 044830 323 RNQFVGQLPCH---------ASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISS 393 (801)
Q Consensus 323 ~n~~~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 393 (801)
+|.+.+..+.. +.+++|++|++++|.+.+.+|..+......++|+.|++++|...+....
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------- 257 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------- 257 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----------
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----------
Confidence 88777544332 1345677777777777766666665543346666666666654432111
Q ss_pred eeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccc--cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCC
Q 044830 394 VELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC--NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR 471 (801)
Q Consensus 394 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 471 (801)
.+.+.+..+..+. ..++|++|++++|.+++..|..+..+++|++|+++
T Consensus 258 ------------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 258 ------------------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp ------------------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred ------------------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence 1111111112222 23578888888888887777778888888888888
Q ss_pred CCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccC
Q 044830 472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPI 551 (801)
Q Consensus 472 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 551 (801)
+|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++++|++.+..|..+..+++|++|++++|++++..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 88888777777888888888888888887777778888888888888888888887888888888888888888887644
Q ss_pred CCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830 552 YNNVPSIKRPFPELRIIDISRNGFTGLLP 580 (801)
Q Consensus 552 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 580 (801)
+..+ ..+++|++|++++|++++.+|
T Consensus 388 ~~~~----~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 DGIF----DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTT----TTCTTCCEEECCSSCBCCCTT
T ss_pred HhHh----ccCCcccEEEccCCCcccCCC
Confidence 4333 678899999999999998888
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.2e-39 Score=354.30 Aligned_cols=403 Identities=22% Similarity=0.251 Sum_probs=219.0
Q ss_pred CCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCE
Q 044830 143 LTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI 222 (801)
Q Consensus 143 l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~ 222 (801)
.++|+.|++++|.+ +.+|..++++ ++|++|++++|.+.+.+|..++++++|+.+++.+|. ..++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L--~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENV--KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHE 75 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSE
T ss_pred cccchhhhcccCch-hhCChhHhcc--cchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCE
Confidence 45666677777776 6677777777 778888888888777778877777777666655551 134666
Q ss_pred EEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeee
Q 044830 223 LDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNF 302 (801)
Q Consensus 223 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 302 (801)
|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+.+. |.. .++|++|++++|.+
T Consensus 76 L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 76 LELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQL 143 (454)
T ss_dssp EECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCC
T ss_pred EEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCC
Confidence 6666666663 3331 2567777777777765 4432 36677777777776642 221 15677777777777
Q ss_pred eeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccc
Q 044830 303 TGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQ 382 (801)
Q Consensus 303 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~ 382 (801)
.+ +| .++++++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .+.. +++|++|++++|.+++ +|.
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~-l~-~~~~---l~~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEE-LP-ELQN---LPFLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSS-CC-CCTT---CTTCCEEECCSSCCSS-CCC
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCc-Cc-cccC---CCCCCEEECCCCcCCc-CCC
Confidence 64 55 46777777777777777764 3332 2467777777777764 44 2333 6777777777776653 221
Q ss_pred cCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCC
Q 044830 383 LDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANF 462 (801)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 462 (801)
. .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. +
T Consensus 213 ~------------------------------~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~ 256 (454)
T 1jl5_A 213 L------------------------------PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---P 256 (454)
T ss_dssp C------------------------------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---C
T ss_pred C------------------------------cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---c
Confidence 1 135667777777766 4553 6677777777777777764 3332 3
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCC-CCCCEEE
Q 044830 463 DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL-PRLQVLV 541 (801)
Q Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~ 541 (801)
++|++|++++|++++ +|.. .++|++|++++|++++. |. -.++|+.|++++|++.+. ..+ ++|++|+
T Consensus 257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~ 323 (454)
T 1jl5_A 257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELN 323 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEE
T ss_pred cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEE
Confidence 577777777777764 4432 35677777777777652 11 125677777777777652 122 4777777
Q ss_pred ccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccc
Q 044830 542 LRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGV 621 (801)
Q Consensus 542 L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (801)
+++|++.+ +|. .+++|+.|++++|+++ .+|. .
T Consensus 324 Ls~N~l~~-lp~-------~~~~L~~L~L~~N~l~-~lp~-~-------------------------------------- 355 (454)
T 1jl5_A 324 VSNNKLIE-LPA-------LPPRLERLIASFNHLA-EVPE-L-------------------------------------- 355 (454)
T ss_dssp CCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC-C--------------------------------------
T ss_pred CCCCcccc-ccc-------cCCcCCEEECCCCccc-cccc-h--------------------------------------
Confidence 77777765 221 2467777777777776 3442 0
Q ss_pred hhhhhhhcccceEEEccCCeeee--eccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee--cCCCC
Q 044830 622 DLEMERVLNIFTTIDLSNNRFEG--MIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG--PIPQG 697 (801)
Q Consensus 622 ~~~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~iP~~ 697 (801)
++.|++||+++|++++ .+|..++++ +.|.+.|.+|.. +++|++|++++|+++| .||..
T Consensus 356 -------l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 356 -------PQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -------CTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC----------------------------------
T ss_pred -------hhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 2456777777777777 566655433 346666666653 4677788888888877 77754
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-37 Score=348.23 Aligned_cols=392 Identities=20% Similarity=0.204 Sum_probs=237.0
Q ss_pred EEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccC-cccccCCCCCCEEEcCCC
Q 044830 198 QLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQV-PASLSNLKQLTVLNLEDN 276 (801)
Q Consensus 198 ~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n 276 (801)
.++.+++.+. .+|. -.++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~--~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH--QVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS--SCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc--cCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555322 2333 2356777777777777666667777777777777777765433 455677777777777777
Q ss_pred CCccccCccccCCCCCcEeeccCeeeeeeCCcc--CcCCCCCCEEEcccccccccCCCC-C-CCCCCCEEEccCCcCCcc
Q 044830 277 QFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLS--AFNLTQLSLLELSRNQFVGQLPCH-A-SCLPLSHLKLGGNFLDGR 352 (801)
Q Consensus 277 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~~~~~~~~~-~-~~~~L~~L~L~~n~l~~~ 352 (801)
.+.+..|..|+.+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|.. + .+++|++|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 777666667777777777777777766544433 666667777777776666554543 2 555566666666665555
Q ss_pred cchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc
Q 044830 353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432 (801)
Q Consensus 353 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 432 (801)
.+..+..+. ..+|+.|++++|.+. +.+..... ....
T Consensus 170 ~~~~l~~l~-~~~L~~L~l~~n~l~------------------------------~~~~~~~~-------------~~~~ 205 (455)
T 3v47_A 170 CEEDLLNFQ-GKHFTLLRLSSITLQ------------------------------DMNEYWLG-------------WEKC 205 (455)
T ss_dssp CTTTSGGGT-TCEEEEEECTTCBCT------------------------------TCSTTCTT-------------HHHH
T ss_pred Chhhhhccc-cccccccccccCccc------------------------------ccchhhcc-------------cccc
Confidence 444443321 134444444444433 22211100 0000
Q ss_pred cccccCCCCCEEECcCCCCcccCCccccCC---CCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCcccc-
Q 044830 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANF---DSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLA- 508 (801)
Q Consensus 433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~- 508 (801)
..+..+++|++|++++|.+++..|..+... ++|+.|++++|...+... ..+.+.+..+..+.
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKG 271 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGG
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccccccc
Confidence 011123344444444444444333333221 344444444443332110 01111111111111
Q ss_pred -CCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhh
Q 044830 509 -NCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSL 587 (801)
Q Consensus 509 -~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l 587 (801)
..++|+.|++++|++.+..|..+..+++|++|++++|++.+..+..+ ..+++|++|+|++|++++..|.. +.
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~-~~-- 344 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF----WGLTHLLKLNLSQNFLGSIDSRM-FE-- 344 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGG-GT--
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh----cCcccCCEEECCCCccCCcChhH-hc--
Confidence 22456666666666666666666666677777777776666555444 66778888888888887655533 22
Q ss_pred hhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCcccc
Q 044830 588 KAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILR 667 (801)
Q Consensus 588 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 667 (801)
.++.|++|||++|++++..|..|+.+++|+.|+|++|+++
T Consensus 345 ----------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 345 ----------------------------------------NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp ----------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------------------------------------CcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 2456899999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCeEeCcCCcceecCCCCC
Q 044830 668 GEIPVELTSLTALSVLNLSFNQLVGPIPQGK 698 (801)
Q Consensus 668 ~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 698 (801)
+..+..+..+++|++|++++|+++|.+|.-.
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 8777788999999999999999999999643
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.2e-38 Score=345.85 Aligned_cols=384 Identities=23% Similarity=0.252 Sum_probs=224.2
Q ss_pred CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCC-------------CCEEEcCCCCCcccc
Q 044830 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQ-------------LTVLNLEDNQFSGEF 282 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-------------L~~L~L~~n~l~~~~ 282 (801)
..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++ +++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 445677777777777 567777777777777777777777777777776665 4888888888875 3
Q ss_pred CccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCC
Q 044830 283 PDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLST 362 (801)
Q Consensus 283 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 362 (801)
|.. .++|++|++++|.+.+ +|.. +++|++|++++|.+++. +.. .++|++|++++|.+++ +| .+..
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~--~~~L~~L~L~~n~l~~-lp-~~~~--- 151 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNNQLEK-LP-ELQN--- 151 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSSCCSS-CC-CCTT---
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC--CCCCCEEECcCCCCCC-Cc-ccCC---
Confidence 432 3678888888888886 5543 47888888888888752 221 2678888888888885 66 3444
Q ss_pred CCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCC
Q 044830 363 SENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTI 441 (801)
Q Consensus 363 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 441 (801)
+++|++|++++|++++ +|... . +++.|++++|.+++++. ..+++|++|++++|.+++ +|.. .++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~----~-----~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L 217 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP----P-----SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSL 217 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC----T-----TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTC
T ss_pred CCCCCEEECCCCcCcc-cCCCc----c-----cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcc
Confidence 7888888888888874 33322 1 67777777777766542 236777777777777774 3332 2467
Q ss_pred CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521 (801)
Q Consensus 442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (801)
++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. +++|++|++++|
T Consensus 218 ~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred cEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCC
Confidence 77777777777 4553 6777777777777777764 3432 3677777777777775 4432 367777777777
Q ss_pred cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCccc
Q 044830 522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLD 601 (801)
Q Consensus 522 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~ 601 (801)
++.+.. . ..++|+.|++++|++.+.. ...++|+.|++++|++++ +|..
T Consensus 288 ~l~~l~-~---~~~~L~~L~l~~N~l~~i~--------~~~~~L~~L~Ls~N~l~~-lp~~------------------- 335 (454)
T 1jl5_A 288 IFSGLS-E---LPPNLYYLNASSNEIRSLC--------DLPPSLEELNVSNNKLIE-LPAL------------------- 335 (454)
T ss_dssp CCSEES-C---CCTTCCEEECCSSCCSEEC--------CCCTTCCEEECCSSCCSC-CCCC-------------------
T ss_pred ccCccc-C---cCCcCCEEECcCCcCCccc--------CCcCcCCEEECCCCcccc-cccc-------------------
Confidence 776521 1 1256777777777776521 112467777777777764 4421
Q ss_pred ccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccc--cCCccccCCCC
Q 044830 602 YMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG--EIPVELTSLTA 679 (801)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~ 679 (801)
++.|+.||+++|+++ .+|. .+++|+.|++++|++++ .+|.++..
T Consensus 336 ---------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--- 381 (454)
T 1jl5_A 336 ---------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--- 381 (454)
T ss_dssp ---------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE---
T ss_pred ---------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh---
Confidence 235677788888777 3554 36777888888888777 56655442
Q ss_pred CCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCC
Q 044830 680 LSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLG 713 (801)
Q Consensus 680 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~ 713 (801)
++.|++.|.+|.. +..+....+.+|+.
T Consensus 382 -----L~~n~~~~~i~~~--~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 382 -----LRMNSHLAEVPEL--PQNLKQLHVETNPL 408 (454)
T ss_dssp -----EECCC------------------------
T ss_pred -----hhhcccccccccc--cCcCCEEECCCCcC
Confidence 3456777777753 34445555566643
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.9e-36 Score=329.83 Aligned_cols=364 Identities=19% Similarity=0.177 Sum_probs=212.9
Q ss_pred ccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCC
Q 044830 108 PSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFP 187 (801)
Q Consensus 108 p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 187 (801)
+..++++++|++|++++|. +. .+| .+..+++|++|++++|.+.+. + +..+ ++|++|++++|.+++. +
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~--l~----~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l--~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSS--IT----DMT-GIEKLTGLTKLICTSNNITTL-D--LSQN--TNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp EEEHHHHTTCCEEECCSSC--CC----CCT-TGGGCTTCSEEECCSSCCSCC-C--CTTC--TTCSEEECCSSCCSCC-C
T ss_pred ccChhHcCCCCEEEccCCC--cc----cCh-hhcccCCCCEEEccCCcCCeE-c--cccC--CCCCEEECcCCCCcee-e
Confidence 3455666666666666662 21 112 345555555555555555543 1 4444 5555555555555542 1
Q ss_pred ccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCC
Q 044830 188 IDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQ 267 (801)
Q Consensus 188 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 267 (801)
++++++|++|++++| .+++ ++ ++.+++|++|++++|.+++. .++.+++
T Consensus 102 --~~~l~~L~~L~L~~N------------------------~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~ 149 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTN------------------------KLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQ 149 (457)
T ss_dssp --CTTCTTCCEEECCSS------------------------CCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTT
T ss_pred --cCCCCcCCEEECCCC------------------------cCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCc
Confidence 444555555555555 4442 22 44444444444444444432 1444445
Q ss_pred CCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCC
Q 044830 268 LTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGN 347 (801)
Q Consensus 268 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n 347 (801)
|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. ....+++|++|++++|
T Consensus 150 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 150 LTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS
T ss_pred CCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC
Confidence 555555554333222 24444555555555555443 22 44445555555555555432 1124455555555555
Q ss_pred cCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCC
Q 044830 348 FLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKL 427 (801)
Q Consensus 348 ~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l 427 (801)
++++ +| +.. +++|+.|++++|++++..+. .+. .++.|+++.| +|+.|++++|.+
T Consensus 223 ~l~~-ip--~~~---l~~L~~L~l~~N~l~~~~~~----~l~-----~L~~L~l~~n-----------~L~~L~l~~n~~ 276 (457)
T 3bz5_A 223 KLTE-ID--VTP---LTQLTYFDCSVNPLTELDVS----TLS-----KLTTLHCIQT-----------DLLEIDLTHNTQ 276 (457)
T ss_dssp CCSC-CC--CTT---CTTCSEEECCSSCCSCCCCT----TCT-----TCCEEECTTC-----------CCSCCCCTTCTT
T ss_pred cccc-cC--ccc---cCCCCEEEeeCCcCCCcCHH----HCC-----CCCEEeccCC-----------CCCEEECCCCcc
Confidence 5554 33 222 45556666666655543211 111 4555555543 456677788877
Q ss_pred CCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccc
Q 044830 428 TGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSL 507 (801)
Q Consensus 428 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 507 (801)
.+.+| ++.+++|+.|++++|...+.+|. ...+|+.|++++| ++|++|++++|++++. + +
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--C
T ss_pred CCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--c
Confidence 77666 46788899999999987777664 3456666666555 6899999999999974 3 8
Q ss_pred cCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhh
Q 044830 508 ANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSL 587 (801)
Q Consensus 508 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l 587 (801)
.++++|+.|++++|++++ ++.|..|.+++|.+.|. ..+..|..+++++|+++|.+|..++...
T Consensus 336 ~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~---------~~~~~l~~l~l~~N~l~g~ip~~~~~~~ 398 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE---------GQTITMPKETLTNNSLTIAVSPDLLDQF 398 (457)
T ss_dssp TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---------EEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---------ceeeecCccccccCcEEEEcChhHhccc
Confidence 899999999999999976 25667778999998875 2456688899999999999997755433
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-36 Score=319.23 Aligned_cols=272 Identities=25% Similarity=0.384 Sum_probs=195.5
Q ss_pred CCCCCCCCCCCcc--cceeEeCCCC--CcEEEEEcCCCCCCc--ccCCCcccccCCCCCeeeCCC-CCCCCCcccccccC
Q 044830 17 KTKSWNKDGDCCS--WDGIICDEMT--GHVIGLDLSSSWLLG--TLHPNSTLFLLHHLQKLNLAC-NDFNGTKISSNFGQ 89 (801)
Q Consensus 17 ~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~ 89 (801)
.+++|+.+.+||. |+||.|+..+ ++|++|+|+++.+.| .+++ .+..+++|++|+|++ |.+.+. +|..|+.
T Consensus 23 ~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~ 99 (313)
T 1ogq_A 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAK 99 (313)
T ss_dssp GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGG
T ss_pred cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhc
Confidence 6889988889999 9999998665 899999999999998 7777 889999999999995 888766 7878899
Q ss_pred CCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCC
Q 044830 90 FTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSS 169 (801)
Q Consensus 90 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 169 (801)
+++|++|+|++|.+++.+|..|.++++|++|++++|. +. +.+|..+..+++|++|++++|.+.+.+|..+..+
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~--l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-- 172 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--LS---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-- 172 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--EE---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC--
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc--cC---CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh--
Confidence 9999999999999988888888888888888888772 22 2334444455555555555554444444444444
Q ss_pred C-CccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEE
Q 044830 170 A-SLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLD 248 (801)
Q Consensus 170 ~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 248 (801)
+ +|++|++++|.+++.+|..+. .++ |++|++++|.+++..|..+..+++|+.|+
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFA------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGG------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred hhcCcEEECcCCeeeccCChHHh------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 3 344444444444333333322 222 66666666666666677777777777777
Q ss_pred cccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccc
Q 044830 249 LYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQ 325 (801)
Q Consensus 249 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 325 (801)
+++|.+++..|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus 228 L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 777777765554 667777777777777777777777777777777777777777777765 667777777777776
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-34 Score=320.94 Aligned_cols=345 Identities=25% Similarity=0.355 Sum_probs=196.0
Q ss_pred CCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEE
Q 044830 193 FPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLN 272 (801)
Q Consensus 193 l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 272 (801)
+++++.|+++++.+.. ++....+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~--l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc--CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4567777777664322 3433356666666666666654322 5666666666666666654333 55666666666
Q ss_pred cCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcc
Q 044830 273 LEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGR 352 (801)
Q Consensus 273 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 352 (801)
+++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ |.+. +.
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~-----------------------~~ 170 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVT-----------------------DL 170 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCC-----------------------CC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-Cccc-----------------------Cc
Confidence 66666554322 5555666666666665553 22 24455555555543 1111 11
Q ss_pred cchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc
Q 044830 353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432 (801)
Q Consensus 353 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 432 (801)
+. +. .+++|+.|++++|.+++ .
T Consensus 171 -~~-~~---~l~~L~~L~l~~n~l~~---------------------------------------------------~-- 192 (466)
T 1o6v_A 171 -KP-LA---NLTTLERLDISSNKVSD---------------------------------------------------I-- 192 (466)
T ss_dssp -GG-GT---TCTTCCEEECCSSCCCC---------------------------------------------------C--
T ss_pred -hh-hc---cCCCCCEEECcCCcCCC---------------------------------------------------C--
Confidence 11 22 24555555555554431 1
Q ss_pred cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512 (801)
Q Consensus 433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 512 (801)
..+..+++|++|++++|.+++..| ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 266 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK 266 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCC
Confidence 113344444444444444443322 33444455555555544422 234445555555555555553322 555555
Q ss_pred CcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhc
Q 044830 513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMH 592 (801)
Q Consensus 513 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~ 592 (801)
|++|++++|++.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..|. .
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~~---~------- 328 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISPV---S------- 328 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGGG---G-------
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchhh---c-------
Confidence 6666666665555433 5556666666666666554332 25667777777777777765441 1
Q ss_pred cCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCc
Q 044830 593 GDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPV 672 (801)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 672 (801)
.++.|+.|++++|++++. ..++++++|+.|++++|++++..|
T Consensus 329 -----------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 329 -----------------------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp -----------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred -----------------------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-
Confidence 135677888888888765 367888888888888888888777
Q ss_pred cccCCCCCCeEeCcCCccee
Q 044830 673 ELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 673 ~l~~l~~L~~L~ls~N~l~g 692 (801)
+..+++|+.|++++|++++
T Consensus 371 -~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GTTCTTCCEEECCCEEEEC
T ss_pred -hhcCCCCCEEeccCCcccC
Confidence 7888888888888888887
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.3e-35 Score=324.35 Aligned_cols=354 Identities=21% Similarity=0.220 Sum_probs=219.2
Q ss_pred CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 295 (801)
.+++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 567788888888877753 4 577778888888888877763 3 77777888888888877754 3 6777778888
Q ss_pred eccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCC
Q 044830 296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNK 375 (801)
Q Consensus 296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~ 375 (801)
++++|.+.+ +| +..+++|++|++++|.+++. + ...+++|++|++++|...+.++ +. .+++|+.|++++|+
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~~--~~---~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKLD--VT---PQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCCC--CT---TCTTCCEEECCSSC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCcccccc--cc---cCCcCCEEECCCCc
Confidence 888877775 33 66777777888777777753 2 2266777777777775544442 22 35667777777776
Q ss_pred ccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccC
Q 044830 376 LTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMI 455 (801)
Q Consensus 376 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 455 (801)
+++. + . ..++ .|+.|++++|.+++.+...+++|+.|++++|++++ +| +..+++|+.|++++|.+++..
T Consensus 182 l~~l-~-l--~~l~-----~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 182 ITEL-D-V--SQNK-----LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCCC-C-C--TTCT-----TCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ccee-c-c--ccCC-----CCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 6542 1 1 1111 44455555555444443344444444444444443 22 444444444444444444332
Q ss_pred CccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC
Q 044830 456 PQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP 535 (801)
Q Consensus 456 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 535 (801)
+..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|. ..+
T Consensus 250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~ 307 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAA 307 (457)
T ss_dssp ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTC
T ss_pred ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCC
Confidence 223344444444333 23445555555554444 34556666666666655554442 223
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEE
Q 044830 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMI 615 (801)
Q Consensus 536 ~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (801)
+|+.|++ ..+++|+.|++++|++++. + +.
T Consensus 308 ~L~~L~l-----------------~~~~~L~~L~L~~N~l~~l-~---l~------------------------------ 336 (457)
T 3bz5_A 308 GITELDL-----------------SQNPKLVYLYLNNTELTEL-D---VS------------------------------ 336 (457)
T ss_dssp CCSCCCC-----------------TTCTTCCEEECTTCCCSCC-C---CT------------------------------
T ss_pred cceEech-----------------hhcccCCEEECCCCccccc-c---cc------------------------------
Confidence 3333333 3456788999999988863 3 11
Q ss_pred EEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCC
Q 044830 616 LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP 695 (801)
Q Consensus 616 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 695 (801)
.++.|+.||+++|++++ ++.|+.|++++|.++|. ..+..|..+++++|+++|.||
T Consensus 337 ------------~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 337 ------------HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp ------------TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred ------------cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 14567889999999886 24677788999999886 345678889999999999999
Q ss_pred CC
Q 044830 696 QG 697 (801)
Q Consensus 696 ~~ 697 (801)
..
T Consensus 392 ~~ 393 (457)
T 3bz5_A 392 PD 393 (457)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.8e-33 Score=311.47 Aligned_cols=325 Identities=26% Similarity=0.334 Sum_probs=205.4
Q ss_pred CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 249 (801)
+++++|++.++.+.. +| .+..+++|++|++++|.+.. ++.+..+++|++|++++|.+++..+ ++++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC--chhhhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 789999999999875 44 48889999999999995433 3335589999999999999986544 999999999999
Q ss_pred ccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccccc
Q 044830 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ 329 (801)
Q Consensus 250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 329 (801)
++|.+.+..+ +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+.++++|++|++++|.+.+.
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC
Confidence 9999986533 89999999999999998854 3 48999999999996 4555332 377889999999998887642
Q ss_pred CCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCC
Q 044830 330 LPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL 409 (801)
Q Consensus 330 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 409 (801)
+....+++|++|++++|.+.+..| +.. +++|+.|++++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~---l~~L~~L~l~~------------------------------------ 230 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGI---LTNLDELSLNG------------------------------------ 230 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGG---CTTCCEEECCS------------------------------------
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccc---cCCCCEEECCC------------------------------------
Confidence 222244455555555554443322 111 33344444444
Q ss_pred CCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCc
Q 044830 410 PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL 489 (801)
Q Consensus 410 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 489 (801)
|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|
T Consensus 231 ---------------n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 231 ---------------NQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp ---------------SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ---------------CCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 433321 234445555555555555554333 4555555555555555553322 4455555
Q ss_pred cEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEE
Q 044830 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIID 569 (801)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~Ld 569 (801)
++|++++|++++..+ +..+++|+.|++++|++.+..| +..+++|+.|++++|++.+.. .+..+++|+.|+
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~ 359 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS------SLANLTNINWLS 359 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEE
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch------hhccCCCCCEEe
Confidence 555555555554322 4455555555555555555443 444555555555555554321 124455555555
Q ss_pred ccCCcCCccCc
Q 044830 570 ISRNGFTGLLP 580 (801)
Q Consensus 570 Ls~N~l~~~~p 580 (801)
+++|++++..|
T Consensus 360 l~~n~l~~~~~ 370 (466)
T 1o6v_A 360 AGHNQISDLTP 370 (466)
T ss_dssp CCSSCCCBCGG
T ss_pred CCCCccCccch
Confidence 55555554433
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=319.49 Aligned_cols=216 Identities=19% Similarity=0.177 Sum_probs=108.9
Q ss_pred ccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCC
Q 044830 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511 (801)
Q Consensus 432 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 511 (801)
+..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|.......
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 33444445555555555555544444455555555555555555544444555555555555555555444444444444
Q ss_pred CCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhh
Q 044830 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMM 591 (801)
Q Consensus 512 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~ 591 (801)
+|+.|++++|++.+..+..+..+++|+.|+|++|++.+..+..+ ..++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~---------------------------- 272 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML----HELL---------------------------- 272 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC----TTCT----------------------------
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc----cccc----------------------------
Confidence 55555555555554444445555555555555554443322221 2333
Q ss_pred ccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCC
Q 044830 592 HGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIP 671 (801)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 671 (801)
.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 273 ---------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 273 ---------------------------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp ---------------------------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred ---------------------------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 34555555555555555556666666666666666665555
Q ss_pred ccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCC
Q 044830 672 VELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFA 718 (801)
Q Consensus 672 ~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 718 (801)
..|..+++|+.|++++|++.+..+....+.......+.++...|+.|
T Consensus 314 ~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred hHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 55566666666666666665544321111112223445555555443
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-34 Score=303.74 Aligned_cols=259 Identities=31% Similarity=0.496 Sum_probs=238.0
Q ss_pred ccccEEEecCCCCCC--CCccccccCCCCCEEECcC-CCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccE
Q 044830 415 SRIRFLSVSDNKLTG--EFPSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 491 (801)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999998 8899999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC-CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEc
Q 044830 492 LNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP-RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI 570 (801)
Q Consensus 492 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdL 570 (801)
|++++|.+++.+|..+..+++|++|++++|++.+.+|..+..++ +|++|++++|++.+.+|..+ ..++ |+.|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~----~~l~-L~~L~L 204 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF----ANLN-LAFVDL 204 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG----GGCC-CSEEEC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH----hCCc-ccEEEC
Confidence 99999999999999999999999999999999989999999998 99999999999998877665 5666 999999
Q ss_pred cCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccc
Q 044830 571 SRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEV 650 (801)
Q Consensus 571 s~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l 650 (801)
++|++++.+|..+ . .++.|+.|+|++|++++.+|. +
T Consensus 205 s~N~l~~~~~~~~-~------------------------------------------~l~~L~~L~L~~N~l~~~~~~-~ 240 (313)
T 1ogq_A 205 SRNMLEGDASVLF-G------------------------------------------SDKNTQKIHLAKNSLAFDLGK-V 240 (313)
T ss_dssp CSSEEEECCGGGC-C------------------------------------------TTSCCSEEECCSSEECCBGGG-C
T ss_pred cCCcccCcCCHHH-h------------------------------------------cCCCCCEEECCCCceeeecCc-c
Confidence 9999998777431 1 246789999999999988776 8
Q ss_pred cccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCCCCCCCCCCCCC
Q 044830 651 GKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNLGLCGFALTQQC 723 (801)
Q Consensus 651 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~l~~~c 723 (801)
..+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.||+.+||.|+. .|
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 8999999999999999999999999999999999999999999999988999999999999999999876 46
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=303.80 Aligned_cols=301 Identities=20% Similarity=0.181 Sum_probs=185.1
Q ss_pred CCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeec
Q 044830 218 SPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISL 297 (801)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 297 (801)
+.+++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+....+..|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35666666666666555666777777777777777777666667777777777777777776555556667777777777
Q ss_pred cCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCc
Q 044830 298 AHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKL 376 (801)
Q Consensus 298 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l 376 (801)
++|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+..+.. +++|+.|++++|.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~i 188 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH---LHGLIVLRLRHLNI 188 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT---CTTCCEEEEESCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc---cCCCcEEeCCCCcC
Confidence 7777776666666777777777777777666555555 5666777777776666444444444 56666666666665
Q ss_pred cccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC
Q 044830 377 TGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP 456 (801)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 456 (801)
.+..+..+ ..+++|+.|++++|...+.+|.......+|++|++++|.+++..+
T Consensus 189 ~~~~~~~~---------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 189 NAIRDYSF---------------------------KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CEECTTCS---------------------------CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred cEeChhhc---------------------------ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 53222111 113455555555555555555444444466666666666664433
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCC
Q 044830 457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPR 536 (801)
Q Consensus 457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 536 (801)
..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..+..+++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 45556666666666666666555555666666666666666666555556666666666666666665555555555555
Q ss_pred CCEEEccCCcCc
Q 044830 537 LQVLVLRSNSFH 548 (801)
Q Consensus 537 L~~L~L~~N~l~ 548 (801)
|+.|++++|++.
T Consensus 322 L~~L~l~~N~l~ 333 (477)
T 2id5_A 322 LETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEEccCCCcc
Confidence 555555555544
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-32 Score=294.13 Aligned_cols=315 Identities=20% Similarity=0.180 Sum_probs=206.3
Q ss_pred CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 295 (801)
.+++++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|+.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45667777777777764444456777888888888888777666777788888888888888877777777788888888
Q ss_pred eccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCC
Q 044830 296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374 (801)
Q Consensus 296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n 374 (801)
++++|.+....+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++. + +. .+++|+.|++++|
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~---~l~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LS---LIPSLFHANVSYN 196 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GG---GCTTCSEEECCSS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cc---cccccceeecccc
Confidence 888887774433445677888888888887776655555 677777778777777643 2 22 2667888888887
Q ss_pred CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc
Q 044830 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454 (801)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 454 (801)
.+++.. ..++|+.|++++|.+... |.. ..++|+.|++++|.+++.
T Consensus 197 ~l~~~~--------------------------------~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 197 LLSTLA--------------------------------IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT 241 (390)
T ss_dssp CCSEEE--------------------------------CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC
T ss_pred cccccC--------------------------------CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc
Confidence 765311 012445555555555432 221 234566666666666543
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCC
Q 044830 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL 534 (801)
Q Consensus 455 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 534 (801)
..+..+++|++|++++|.+++..|..|..+++|++|++++|++++ +|..+..+++|++|++++|++.+ +|..+..+
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 317 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF 317 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHH
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCcccccc
Confidence 345566666666666666666666666666666666666666653 34445566677777777777653 34445666
Q ss_pred CCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHH
Q 044830 535 PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPAR 582 (801)
Q Consensus 535 ~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~ 582 (801)
++|+.|++++|++.... +..+++|+.|++++|++.+.-...
T Consensus 318 ~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp TTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred CcCCEEECCCCccceeC-------chhhccCCEEEcCCCCccchhHHH
Confidence 77777777777766431 256778888888888887543333
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-31 Score=290.63 Aligned_cols=351 Identities=17% Similarity=0.109 Sum_probs=257.1
Q ss_pred CCCCCCCCCCCcc-cceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCE
Q 044830 17 KTKSWNKDGDCCS-WDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTH 95 (801)
Q Consensus 17 ~l~~w~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~ 95 (801)
.+++|..+.+||. |.++.|.....++ ........... .-..++++++|++++|.++.. .+..|..+++|++
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~ 73 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVEL 73 (390)
T ss_dssp -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESEE-CTHHHHHCCCCSE
T ss_pred CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhhC-ChhHhcccccCcE
Confidence 3678988888885 5555553221222 11111111112 334678999999999988664 3344788999999
Q ss_pred EeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEE
Q 044830 96 LNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISL 175 (801)
Q Consensus 96 L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L 175 (801)
|+|++|.+++..+..|..+++|++|++++|. +. ...+..+.++++|++|++++|.+....+..|..+ ++|++|
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l--~~L~~L 146 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT--PKLTTL 146 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSC--CC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCC--CC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC--CCCcEE
Confidence 9999999998888899999999999999983 33 3345567889999999999999987777777888 899999
Q ss_pred EccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCc
Q 044830 176 SLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFD 255 (801)
Q Consensus 176 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 255 (801)
++++|.+.+..+..+..+++|++|++++|.+... ....+++|+.|++++|.+++ +...++|+.|++++|.+.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN 218 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeee
Confidence 9999999988888899999999999999954332 22367889999999998874 234468999999999987
Q ss_pred ccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCC
Q 044830 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHAS 335 (801)
Q Consensus 256 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 335 (801)
.. |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.......
T Consensus 219 ~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (390)
T 3o6n_A 219 VV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293 (390)
T ss_dssp EE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSC
T ss_pred ec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCC
Confidence 54 332 347899999999998864 5788899999999999999988888888999999999999988864333336
Q ss_pred CCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccc
Q 044830 336 CLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSS 415 (801)
Q Consensus 336 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 415 (801)
+++|++|++++|.+. .+|..+.. +++|+.|++++|.++. .+...++
T Consensus 294 l~~L~~L~L~~n~l~-~~~~~~~~---l~~L~~L~L~~N~i~~------------------------------~~~~~~~ 339 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVERNQPQ---FDRLENLYLDHNSIVT------------------------------LKLSTHH 339 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHH---HTTCSEEECCSSCCCC------------------------------CCCCTTC
T ss_pred CCCCCEEECCCCcce-ecCccccc---cCcCCEEECCCCccce------------------------------eCchhhc
Confidence 788888888888887 55665555 5677777777777653 2223345
Q ss_pred cccEEEecCCCCCC
Q 044830 416 RIRFLSVSDNKLTG 429 (801)
Q Consensus 416 ~L~~L~L~~n~l~~ 429 (801)
+|+.|++++|.+..
T Consensus 340 ~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 340 TLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSEEECCSSCEEH
T ss_pred cCCEEEcCCCCccc
Confidence 77777777777764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.7e-31 Score=305.66 Aligned_cols=316 Identities=20% Similarity=0.183 Sum_probs=205.6
Q ss_pred CCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEe
Q 044830 216 WSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRI 295 (801)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 295 (801)
.+.+++.+++++|.+....+..+..+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34566777777777765555556777888888888888777777777788888888888888877777777778888888
Q ss_pred eccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCC
Q 044830 296 SLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374 (801)
Q Consensus 296 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n 374 (801)
++++|.+.+..+..+.++++|++|++++|.+++..+..+ .+++|++|++++|.+++. + +.. +++|+.|++++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~---l~~L~~L~l~~n 202 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSL---IPSLFHANVSYN 202 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGG---CTTCSEEECCSS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhh---hhhhhhhhcccC
Confidence 888887775544445777888888888887777666555 677777777777777643 2 222 567788888887
Q ss_pred CccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc
Q 044830 375 KLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM 454 (801)
Q Consensus 375 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 454 (801)
.+++.. .+.+|+.|++++|.+... +..+ .++|+.|++++|.+++.
T Consensus 203 ~l~~l~--------------------------------~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 203 LLSTLA--------------------------------IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT 247 (597)
T ss_dssp CCSEEE--------------------------------CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC
T ss_pred cccccc--------------------------------CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC
Confidence 765311 012344445555444422 1111 23556666666665542
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCC
Q 044830 455 IPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATL 534 (801)
Q Consensus 455 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 534 (801)
..+..+++|++|++++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|++.+ +|..+..+
T Consensus 248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l 323 (597)
T 3oja_B 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF 323 (597)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHH
T ss_pred --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccC
Confidence 445556666666666666666656666666666666666666654 34455556667777777776653 45555666
Q ss_pred CCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHH
Q 044830 535 PRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARY 583 (801)
Q Consensus 535 ~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~ 583 (801)
++|+.|+|++|++.+.. +..+++|+.|++++|++.+..+..+
T Consensus 324 ~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp TTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred CCCCEEECCCCCCCCcC-------hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 77777777777766432 2567788888888888876544333
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.1e-30 Score=276.65 Aligned_cols=285 Identities=22% Similarity=0.305 Sum_probs=172.4
Q ss_pred ccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCC
Q 044830 238 IGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLS 317 (801)
Q Consensus 238 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 317 (801)
+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. +.+..+++|++|++++|.+.+. +. +..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence 33344444444444444322 11 44444444444444444421 1344444444444444444422 11 44445555
Q ss_pred EEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeee
Q 044830 318 LLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELR 397 (801)
Q Consensus 318 ~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~ 397 (801)
+|++++|.....++....+++|++|++++|.+.+..+ +.. +++|+.|++++|.+.+..+
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~---l~~L~~L~l~~n~l~~~~~---------------- 194 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IAN---LTDLYSLSLNYNQIEDISP---------------- 194 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGG---CTTCSEEECTTSCCCCCGG----------------
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hcc---CCCCCEEEccCCccccccc----------------
Confidence 5555555433333332244455555555555443222 222 5666666666666542211
Q ss_pred EEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccc
Q 044830 398 HLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG 477 (801)
Q Consensus 398 ~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 477 (801)
...+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 195 -------------~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 195 -------------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp -------------GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred -------------ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 1124567777777777765433 6777888888888888875443 7778888888888888875
Q ss_pred cCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCC
Q 044830 478 SIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPS 557 (801)
Q Consensus 478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 557 (801)
. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+ +
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~-- 329 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L-- 329 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G--
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h--
Confidence 3 4577888888888888888754 457788888888888888888888888888888888888888887654 2
Q ss_pred CCCCCCCCcEEEccCCcCC
Q 044830 558 IKRPFPELRIIDISRNGFT 576 (801)
Q Consensus 558 ~~~~l~~L~~LdLs~N~l~ 576 (801)
..+++|+.||+++|+++
T Consensus 330 --~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 --ASLSKMDSADFANQVIK 346 (347)
T ss_dssp --GGCTTCSEESSSCC---
T ss_pred --hhhhccceeehhhhccc
Confidence 67888999999988875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-30 Score=299.34 Aligned_cols=349 Identities=17% Similarity=0.150 Sum_probs=266.6
Q ss_pred CCCCCCCCCCCcc----cceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCC
Q 044830 17 KTKSWNKDGDCCS----WDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTK 92 (801)
Q Consensus 17 ~l~~w~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 92 (801)
.+++|..+.+||. |.++.|+. ++ +-...... ... .-..+.+++.|++++|.+... .+..|..+++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~i---~~~~~~~~--~~~--~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~ 76 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV---HI---DMQTQDVY--FGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQ 76 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC---EE---CSSCCCCE--ESC--SSGGGCCCSEEEESSCEESEE-CTHHHHHCCC
T ss_pred cccCCCCCCcCcccCcCceeEecCc---ee---cccccccc--cCc--ccccCCCceEEEeeCCCCCCc-CHHHHccCCC
Confidence 6789988888884 66665542 11 11111111 111 233578899999999988764 3455788999
Q ss_pred CCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCc
Q 044830 93 LTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASL 172 (801)
Q Consensus 93 L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L 172 (801)
|++|+|++|.+++..|..|+.+++|++|+|++|. +. +..+..+.++++|++|++++|.+....+..|..+ ++|
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l--~~L 149 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT--PKL 149 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--CC---CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC--CCC
Confidence 9999999999998888899999999999999983 33 3445567899999999999999998877778888 999
Q ss_pred cEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccc
Q 044830 173 ISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVC 252 (801)
Q Consensus 173 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 252 (801)
++|+|++|.+++..|..+..+++|++|++++|.+... ....+++|+.|++++|.+++ +...++|+.|++++|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN 221 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCC
Confidence 9999999999988888899999999999999954332 12367889999999998874 344568999999999
Q ss_pred cCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCC
Q 044830 253 YFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPC 332 (801)
Q Consensus 253 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 332 (801)
.+....+. + .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++....
T Consensus 222 ~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 296 (597)
T 3oja_B 222 SINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296 (597)
T ss_dssp CCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS
T ss_pred cccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc
Confidence 98754332 2 3689999999999986 36788999999999999999988888899999999999999998864333
Q ss_pred CCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCC
Q 044830 333 HASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFI 412 (801)
Q Consensus 333 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 412 (801)
...+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+++. +..
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~---l~~L~~L~L~~N~l~~~------------------------------~~~ 342 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQ---FDRLENLYLDHNSIVTL------------------------------KLS 342 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHH---HTTCSEEECCSSCCCCC------------------------------CCC
T ss_pred cccCCCCcEEECCCCCCC-ccCccccc---CCCCCEEECCCCCCCCc------------------------------Chh
Confidence 336788888888888887 56766665 67788888888776532 223
Q ss_pred ccccccEEEecCCCCCCC
Q 044830 413 LSSRIRFLSVSDNKLTGE 430 (801)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~ 430 (801)
.+++|+.|++++|.+.+.
T Consensus 343 ~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCCSEEECCSSCEEHH
T ss_pred hcCCCCEEEeeCCCCCCh
Confidence 346778888888877653
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.7e-30 Score=277.20 Aligned_cols=196 Identities=24% Similarity=0.399 Sum_probs=122.7
Q ss_pred cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCc
Q 044830 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514 (801)
Q Consensus 435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 514 (801)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 4444555555555555543322 4455555555555555543222 4455555555555555553322 55556666
Q ss_pred EEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccC
Q 044830 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGD 594 (801)
Q Consensus 515 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~ 594 (801)
+|++++|++.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++++. |. +
T Consensus 225 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~-~~--~---------- 283 (347)
T 4fmz_A 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI-SV--L---------- 283 (347)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC-GG--G----------
T ss_pred EEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC-hh--h----------
Confidence 66666666655433 55666666666666665542 1235677788888888877643 21 1
Q ss_pred CCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccc
Q 044830 595 NDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL 674 (801)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 674 (801)
..++.|+.|++++|++++..|..++.+++|+.|+|++|.+++..| +
T Consensus 284 --------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 284 --------------------------------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp --------------------------------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred --------------------------------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 124567888999999888888888899999999999999987766 7
Q ss_pred cCCCCCCeEeCcCCcce
Q 044830 675 TSLTALSVLNLSFNQLV 691 (801)
Q Consensus 675 ~~l~~L~~L~ls~N~l~ 691 (801)
..+++|++|++++|+++
T Consensus 330 ~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEESSSCC---
T ss_pred hhhhccceeehhhhccc
Confidence 88899999999999875
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.6e-33 Score=313.20 Aligned_cols=383 Identities=20% Similarity=0.168 Sum_probs=219.3
Q ss_pred CCCCEEEccCccCcccCccc-ccCCCCCCEEEcccccCcc----cCcccccCCCCCCEEEcCCCCCccccCccc-cCCC-
Q 044830 218 SPLRILDLSITKFSGKIPDT-IGNLRDLKFLDLYVCYFDG----QVPASLSNLKQLTVLNLEDNQFSGEFPDVF-GNLS- 290 (801)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~- 290 (801)
++|++|++++|.++...... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777776443333 6677888888888888764 345667777888888888888765444333 2344
Q ss_pred ---CCcEeeccCeeeee----eCCccCcCCCCCCEEEcccccccccCCCCC------CCCCCCEEEccCCcCCccc----
Q 044830 291 ---KLTRISLAHLNFTG----QLPLSAFNLTQLSLLELSRNQFVGQLPCHA------SCLPLSHLKLGGNFLDGRI---- 353 (801)
Q Consensus 291 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~------~~~~L~~L~L~~n~l~~~~---- 353 (801)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 58888888887763 346667777777777777777654222111 1234555555555555422
Q ss_pred chhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcc
Q 044830 354 PSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS 433 (801)
Q Consensus 354 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~ 433 (801)
+..+.. +++|++|++++|.+++ ..+.
T Consensus 163 ~~~l~~---~~~L~~L~L~~n~i~~---------------------------------------------------~~~~ 188 (461)
T 1z7x_W 163 ASVLRA---KPDFKELTVSNNDINE---------------------------------------------------AGVR 188 (461)
T ss_dssp HHHHHH---CTTCCEEECCSSBCHH---------------------------------------------------HHHH
T ss_pred HHHHhh---CCCCCEEECcCCCcch---------------------------------------------------HHHH
Confidence 222222 3455555555555432 2111
Q ss_pred ccc-----cCCCCCEEECcCCCCccc----CCccccCCCCCCEEeCCCCcccccC-----CccccCCCCccEEECCCCcC
Q 044830 434 SIC-----NLSTIEYLNLSNNSLSGM----IPQCLANFDSLSLLDLRKNQFRGSI-----PQIFSKCYDLVALNLNDNEL 499 (801)
Q Consensus 434 ~l~-----~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l 499 (801)
.+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++... +..+..+++|++|++++|.+
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 111 133455555555555432 3444445555555555555554321 11222455666666666666
Q ss_pred CCC----CCccccCCCCCcEEeCCCCcCCCCcchhcc-----CCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEc
Q 044830 500 EGK----LPPSLANCGDLEVLDVGNNKINDAFPYWTA-----TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI 570 (801)
Q Consensus 500 ~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdL 570 (801)
++. ++..+..+++|++|++++|++.+..+..+. ..++|++|++++|.+++.....++..+..+++|+.||+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence 532 344555566666666666666543333222 22567777777776665432222223355677888888
Q ss_pred cCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeee----ec
Q 044830 571 SRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEG----MI 646 (801)
Q Consensus 571 s~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~~ 646 (801)
++|++++..+..+...+.. ..+.|+.|+|++|++++ .+
T Consensus 349 s~n~i~~~~~~~l~~~l~~--------------------------------------~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQ--------------------------------------PGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTS--------------------------------------TTCCCCEEECTTSCCCHHHHHHH
T ss_pred cCCccccccHHHHHHHHcC--------------------------------------CCCceEEEECCCCCCChhhHHHH
Confidence 8887765444332221110 13467888888888886 67
Q ss_pred cccccccccCceEeCcCccccccCCcc----c-cCCCCCCeEeCcCCccee
Q 044830 647 PKEVGKLSSLKLLNFSHNILRGEIPVE----L-TSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 647 p~~l~~l~~L~~L~Ls~N~l~~~ip~~----l-~~l~~L~~L~ls~N~l~g 692 (801)
|..+..+++|+.|+|++|++++..... + .....|+.|++.++....
T Consensus 391 ~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 888888888888888888887541111 1 123456677766665543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9.1e-29 Score=263.21 Aligned_cols=287 Identities=17% Similarity=0.196 Sum_probs=141.2
Q ss_pred CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298 (801)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 298 (801)
+++.++++++.++ .+|..+. ++|+.|++++|.+.+..|..|.++++|++|++++|.+++..|..|+.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4444432 456666666666655555555666666666666666555555555555556666655
Q ss_pred CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccc
Q 044830 299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378 (801)
Q Consensus 299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 378 (801)
+|.+. .+|..+. ++|++|++++|.+.+ ..+..+.. +++|+.|++++|.++.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-----------------------~~~~~~~~---l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRK-----------------------VPKGVFSG---LRNMNCIEMGGNPLEN 161 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCC-----------------------CCSGGGSS---CSSCCEEECCSCCCBG
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCc-----------------------cCHhHhCC---CccCCEEECCCCcccc
Confidence 55555 3333322 445555555554443 22223333 4555555555555532
Q ss_pred --cccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC
Q 044830 379 --QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP 456 (801)
Q Consensus 379 --~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 456 (801)
..+..+ . ..+++.|++++|.+++++....++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 162 ~~~~~~~~----~---~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 162 SGFEPGAF----D---GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp GGSCTTSS----C---SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred CCCCcccc----c---CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 111111 0 0033333344444433333333455555555555555544555555555555555555555555
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCC------CCCcEEeCCCCcCC--CCcc
Q 044830 457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANC------GDLEVLDVGNNKIN--DAFP 528 (801)
Q Consensus 457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------~~L~~L~Ls~n~i~--~~~~ 528 (801)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|... ..|+.|++++|++. +..|
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 45555555555555555555 444445555555555555555554433333321 33444444444443 3333
Q ss_pred hhccCCCCCCEEEccCC
Q 044830 529 YWTATLPRLQVLVLRSN 545 (801)
Q Consensus 529 ~~~~~l~~L~~L~L~~N 545 (801)
..+..+++|+.+++++|
T Consensus 314 ~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGTTBCCSTTEEC---
T ss_pred ccccccchhhhhhcccc
Confidence 34444444444444433
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.8e-28 Score=259.27 Aligned_cols=291 Identities=22% Similarity=0.243 Sum_probs=146.3
Q ss_pred CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298 (801)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 298 (801)
+++.++++++.++ .+|..+. ++|+.|++++|.+++..+..|.++++|++|++++|.+.+..|..|+.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5777777777776 4555443 567777777777766555566777777777777777766666666666667777776
Q ss_pred CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccc
Q 044830 299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTG 378 (801)
Q Consensus 299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 378 (801)
+|.+. .+|..+. ++|++|++++|.+.+ ..+..+.. +++|+.|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-----------------------~~~~~~~~---l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITK-----------------------VRKSVFNG---LNQMIVVELGTNPLKS 159 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCB-----------------------BCHHHHTT---CTTCCEEECCSSCCCG
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccc-----------------------cCHhHhcC---CccccEEECCCCcCCc
Confidence 66665 3443332 455555555555543 33333333 4555555555555432
Q ss_pred --cccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC
Q 044830 379 --QIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP 456 (801)
Q Consensus 379 --~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 456 (801)
..+..+ ..+++|++|++++|.++. +|..+. ++|++|++++|.+++..+
T Consensus 160 ~~~~~~~~---------------------------~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 160 SGIENGAF---------------------------QGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp GGBCTTGG---------------------------GGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECT
T ss_pred cCcChhhc---------------------------cCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCH
Confidence 111111 012233333333333331 222211 344444444444444444
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccC---
Q 044830 457 QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTAT--- 533 (801)
Q Consensus 457 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~--- 533 (801)
..+.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 44444445555555555444444444444455555555555544 34444445555555555555554444443322
Q ss_pred ---CCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCc
Q 044830 534 ---LPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574 (801)
Q Consensus 534 ---l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~ 574 (801)
.+.++.|++++|++..... .+..+..+++++.++|++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i--~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEI--QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGS--CGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCccccccc--CccccccccceeEEEecccC
Confidence 2455666666665542110 11123556666667766663
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.7e-28 Score=256.33 Aligned_cols=275 Identities=20% Similarity=0.174 Sum_probs=175.1
Q ss_pred CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830 66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE 145 (801)
Q Consensus 66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 145 (801)
+++++|+|++|.+++. .+..|+.+++|++|+|++|.+++..|..|+++++|++|++++|. +. .+|..+ .++
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~----~l~~~~--~~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ--LK----ELPEKM--PKT 122 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CS----BCCSSC--CTT
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc--CC----ccChhh--ccc
Confidence 6899999999999875 44579999999999999999998889999999999999999984 32 222222 268
Q ss_pred CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc--CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEE
Q 044830 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG--EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRIL 223 (801)
Q Consensus 146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L 223 (801)
|++|++++|.+.+..+..+..+ ++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|... .++|++|
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~-~~~L~~L 197 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGL-PPSLTEL 197 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTC--TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSC-CTTCSEE
T ss_pred ccEEECCCCcccccCHhHhcCC--ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCccc-cccCCEE
Confidence 8888888888888888888888 888888888888753 556667777777877777774322 22222 2456666
Q ss_pred EccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeee
Q 044830 224 DLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT 303 (801)
Q Consensus 224 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 303 (801)
++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 66666655555555555555555555555555544445555555555555555555 44444555555555555555554
Q ss_pred eeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCc--ccchhhcCCCCCCCccEEEccCCC
Q 044830 304 GQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG--RIPSWLFNLSTSENLVELDLSNNK 375 (801)
Q Consensus 304 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~~~L~~L~Ls~n~ 375 (801)
+..+..+.... .......++.|++++|++.. ..|..+.. +.+++.+++++|+
T Consensus 277 ~~~~~~f~~~~-----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~---~~~l~~l~L~~N~ 330 (330)
T 1xku_A 277 AIGSNDFCPPG-----------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRC---VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCTTSSSCSS-----------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTT---CCCGGGEEC----
T ss_pred ccChhhcCCcc-----------------cccccccccceEeecCcccccccCcccccc---ccceeEEEecccC
Confidence 33322221110 00012456666666666642 22333333 6778888888774
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.6e-32 Score=303.05 Aligned_cols=369 Identities=21% Similarity=0.161 Sum_probs=247.5
Q ss_pred CCCCEEEcccccCcccCccc-ccCCCCCCEEEcCCCCCccc----cCccccCCCCCcEeeccCeeeeeeCCccCc-CCCC
Q 044830 242 RDLKFLDLYVCYFDGQVPAS-LSNLKQLTVLNLEDNQFSGE----FPDVFGNLSKLTRISLAHLNFTGQLPLSAF-NLTQ 315 (801)
Q Consensus 242 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~ 315 (801)
++|++|++++|.++...... +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+. .++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45667777777665433222 55566667777766666532 344455556666666666655543222221 1220
Q ss_pred CCEEEcccccccccCCCCCCCCCCCEEEccCCcCCc----ccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccc
Q 044830 316 LSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDG----RIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERI 391 (801)
Q Consensus 316 L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 391 (801)
..++|++|++++|.++. .++..+.. +++|++|++++|.+++..+......
T Consensus 83 -------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~---~~~L~~L~Ls~n~i~~~~~~~l~~~---- 136 (461)
T 1z7x_W 83 -------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRT---LPTLQELHLSDNLLGDAGLQLLCEG---- 136 (461)
T ss_dssp -------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTS---CTTCCEEECCSSBCHHHHHHHHHHH----
T ss_pred -------------------CCCceeEEEccCCCCCHHHHHHHHHHHcc---CCceeEEECCCCcCchHHHHHHHHH----
Confidence 00134455555554442 33444444 6677777777777654322211000
Q ss_pred cceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCC----CccccccCCCCCEEECcCCCCcccCCcccc-----CC
Q 044830 392 SSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGE----FPSSICNLSTIEYLNLSNNSLSGMIPQCLA-----NF 462 (801)
Q Consensus 392 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-----~l 462 (801)
.....++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..
T Consensus 137 ------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 198 (461)
T 1z7x_W 137 ------------------LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198 (461)
T ss_dssp ------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC
T ss_pred ------------------HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCC
Confidence 000123577777888877753 355677789999999999999865444443 36
Q ss_pred CCCCEEeCCCCccccc----CCccccCCCCccEEECCCCcCCCCC-----CccccCCCCCcEEeCCCCcCCCC----cch
Q 044830 463 DSLSLLDLRKNQFRGS----IPQIFSKCYDLVALNLNDNELEGKL-----PPSLANCGDLEVLDVGNNKINDA----FPY 529 (801)
Q Consensus 463 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~i~~~----~~~ 529 (801)
++|++|++++|.++.. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|++++. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 6999999999999864 4677788999999999999987532 22334689999999999999875 567
Q ss_pred hccCCCCCCEEEccCCcCcccCCCCCCCC-CCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCC
Q 044830 530 WTATLPRLQVLVLRSNSFHGPIYNNVPSI-KRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGY 608 (801)
Q Consensus 530 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 608 (801)
.+..+++|++|++++|++.+..+..+... ....++|+.|++++|.+++.....+...+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--------------------- 337 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL--------------------- 337 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH---------------------
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH---------------------
Confidence 77789999999999999875433222111 12346999999999999865332221111
Q ss_pred CceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccc-----cccCceEeCcCccccc----cCCccccCCCC
Q 044830 609 DQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK-----LSSLKLLNFSHNILRG----EIPVELTSLTA 679 (801)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~l~~ 679 (801)
..++.|+.|||++|++++..+..+.. .++|+.|+|++|.+++ .+|..+..+++
T Consensus 338 ------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 338 ------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp ------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred ------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 22467899999999998776665554 6799999999999997 78999999999
Q ss_pred CCeEeCcCCcceec
Q 044830 680 LSVLNLSFNQLVGP 693 (801)
Q Consensus 680 L~~L~ls~N~l~g~ 693 (801)
|++|++++|++++.
T Consensus 400 L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 400 LRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSSCCHH
T ss_pred ccEEECCCCCCCHH
Confidence 99999999998764
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=8.6e-28 Score=255.67 Aligned_cols=288 Identities=24% Similarity=0.259 Sum_probs=235.0
Q ss_pred CCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcC
Q 044830 195 FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLE 274 (801)
Q Consensus 195 ~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 274 (801)
+++.++++++.+. .+|... .++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc--ccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6899999998543 345433 4689999999999998778899999999999999999999889999999999999999
Q ss_pred CCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccc--cCCCCCCCCCCCEEEccCCcCCcc
Q 044830 275 DNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVG--QLPCHASCLPLSHLKLGGNFLDGR 352 (801)
Q Consensus 275 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~L~~n~l~~~ 352 (801)
+|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+...+|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-
Confidence 99998 4555544 899999999999997766678899999999999999863 44555522288888888888874
Q ss_pred cchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc
Q 044830 353 IPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP 432 (801)
Q Consensus 353 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 432 (801)
+|..+. ++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+
T Consensus 187 l~~~~~-----~~L~~L~l~~n~i~~~~~~~l---------------------------~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 187 IPKDLP-----ETLNELHLDHNKIQAIELEDL---------------------------LRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CCSSSC-----SSCSCCBCCSSCCCCCCTTSS---------------------------TTCTTCSCCBCCSSCCCCCCT
T ss_pred cCcccc-----CCCCEEECCCCcCCccCHHHh---------------------------cCCCCCCEEECCCCcCCcCCh
Confidence 554432 467777777777664333222 225689999999999998878
Q ss_pred cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccC------CCCccEEECCCCcCC--CCCC
Q 044830 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSK------CYDLVALNLNDNELE--GKLP 504 (801)
Q Consensus 433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~ 504 (801)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+. +..|
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 88999999999999999998 67888999999999999999999877777765 367999999999987 6778
Q ss_pred ccccCCCCCcEEeCCCCc
Q 044830 505 PSLANCGDLEVLDVGNNK 522 (801)
Q Consensus 505 ~~l~~l~~L~~L~Ls~n~ 522 (801)
..|..+++|+.+++++|+
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 889999999999999885
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.9e-28 Score=259.43 Aligned_cols=247 Identities=21% Similarity=0.274 Sum_probs=144.0
Q ss_pred CCCCC----CCCCCCcccceeEeCC--------CCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCccc
Q 044830 17 KTKSW----NKDGDCCSWDGIICDE--------MTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKIS 84 (801)
Q Consensus 17 ~l~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~ 84 (801)
.+++| ....++|.|.|+.|+. ...+|++|+|+++.+. .+++ .+..+++|++|+|++|.++ .+|
T Consensus 46 ~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp 120 (328)
T 4fcg_A 46 WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELP 120 (328)
T ss_dssp HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCC
T ss_pred hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCcc--chh
Confidence 35677 3467899999999952 2346677777776665 4554 5666666666666666665 255
Q ss_pred ccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhh
Q 044830 85 SNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSL 164 (801)
Q Consensus 85 ~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l 164 (801)
..++.+++|++|+|++|.++ .+|..+.++++|++|++++| ++.+.+|..+
T Consensus 121 ~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-----------------------------~~~~~~p~~~ 170 (328)
T 4fcg_A 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-----------------------------PELTELPEPL 170 (328)
T ss_dssp SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-----------------------------TTCCCCCSCS
T ss_pred HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-----------------------------CCccccChhH
Confidence 55666666666666666666 45555666666666666654 2333333322
Q ss_pred h---------ccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCc
Q 044830 165 L---------NLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIP 235 (801)
Q Consensus 165 ~---------~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 235 (801)
. .+ ++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|
T Consensus 171 ~~~~~~~~~~~l--~~L~~L~L~~n~l~-~lp~~l~~l~~------------------------L~~L~L~~N~l~-~l~ 222 (328)
T 4fcg_A 171 ASTDASGEHQGL--VNLQSLRLEWTGIR-SLPASIANLQN------------------------LKSLKIRNSPLS-ALG 222 (328)
T ss_dssp EEEC-CCCEEES--TTCCEEEEEEECCC-CCCGGGGGCTT------------------------CCEEEEESSCCC-CCC
T ss_pred hhccchhhhccC--CCCCEEECcCCCcC-cchHhhcCCCC------------------------CCEEEccCCCCC-cCc
Confidence 2 23 44444444444444 33444444444 444444444444 244
Q ss_pred ccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCC
Q 044830 236 DTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQ 315 (801)
Q Consensus 236 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 315 (801)
..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 44555666666666666666566666666666666666666666666666666666666666666666666666666666
Q ss_pred CCEEEcccccc
Q 044830 316 LSLLELSRNQF 326 (801)
Q Consensus 316 L~~L~l~~n~~ 326 (801)
|+.+++..+.+
T Consensus 303 L~~l~l~~~~~ 313 (328)
T 4fcg_A 303 NCIILVPPHLQ 313 (328)
T ss_dssp TCEEECCGGGS
T ss_pred ceEEeCCHHHH
Confidence 66666655443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.3e-27 Score=249.41 Aligned_cols=253 Identities=24% Similarity=0.266 Sum_probs=220.5
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCccc--CCccccCCCCCCEEeCCC
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGM--IPQCLANFDSLSLLDLRK 472 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~ 472 (801)
.-+.++++++.++.+|....+++++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 8 ~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 445788888889888887788999999999999965555689999999999999999843 356777899999999999
Q ss_pred CcccccCCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcc-c
Q 044830 473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG-P 550 (801)
Q Consensus 473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 550 (801)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 9998 467779999999999999999987655 678999999999999999999999999999999999999999986 4
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcc
Q 044830 551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLN 630 (801)
Q Consensus 551 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 630 (801)
.+..+ ..+++|++|++++|++++..|.. +. .++
T Consensus 167 ~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------------------------~l~ 199 (306)
T 2z66_A 167 LPDIF----TELRNLTFLDLSQCQLEQLSPTA-FN------------------------------------------SLS 199 (306)
T ss_dssp ECSCC----TTCTTCCEEECTTSCCCEECTTT-TT------------------------------------------TCT
T ss_pred chhHH----hhCcCCCEEECCCCCcCCcCHHH-hc------------------------------------------CCC
Confidence 44444 88999999999999998766633 11 245
Q ss_pred cceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCC-CCCeEeCcCCcceecCC
Q 044830 631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT-ALSVLNLSFNQLVGPIP 695 (801)
Q Consensus 631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP 695 (801)
.|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..+..++ +|++|++++|++++..+
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 789999999999988888899999999999999999999999999994 99999999999998654
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-26 Score=257.27 Aligned_cols=251 Identities=22% Similarity=0.207 Sum_probs=223.6
Q ss_pred eeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830 396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475 (801)
Q Consensus 396 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l 475 (801)
...+++++..++.+|....++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 45678888888888877788999999999999988889999999999999999999998889999999999999999999
Q ss_pred cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC-cCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN-KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554 (801)
Q Consensus 476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 554 (801)
++..+..|..+++|++|+|++|++++..+..|.++++|+.|++++| .+....+..+..+++|++|++++|++.+. +
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-- 212 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-- 212 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C--
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c--
Confidence 9887888999999999999999999777778999999999999995 55555556789999999999999999864 2
Q ss_pred CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceE
Q 044830 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT 634 (801)
Q Consensus 555 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 634 (801)
.+..+++|+.|+|++|++++..|.. |. .++.|+.
T Consensus 213 ---~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~~ 246 (452)
T 3zyi_A 213 ---NLTPLVGLEELEMSGNHFPEIRPGS-FH------------------------------------------GLSSLKK 246 (452)
T ss_dssp ---CCTTCTTCCEEECTTSCCSEECGGG-GT------------------------------------------TCTTCCE
T ss_pred ---cccccccccEEECcCCcCcccCccc-cc------------------------------------------CccCCCE
Confidence 2378999999999999999776643 22 2456899
Q ss_pred EEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCC
Q 044830 635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIP 695 (801)
Q Consensus 635 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 695 (801)
|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.....
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999999999999999999999999998888889999999999999999876543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.4e-30 Score=298.77 Aligned_cols=315 Identities=14% Similarity=0.084 Sum_probs=178.3
Q ss_pred CCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCC--Cccccc------------ccCCC
Q 044830 26 DCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNG--TKISSN------------FGQFT 91 (801)
Q Consensus 26 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~~~~~------------~~~l~ 91 (801)
-|++|.++.+... ..+.+... .....+. .+..+++|++|+|+++.... ..+|.. +..++
T Consensus 40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 40 VCRRWFKIDSETR----EHVTMALC-YTATPDR--LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp SCHHHHHHHHHHC----CEEEESCG-GGSCHHH--HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HhHHHHHhhhccc----cEEEEeec-cccChHH--HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence 3558999865321 12233321 1112222 56688999999998754210 002211 22788
Q ss_pred CCCEEeCCCCCCccccccCCcCC--CCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCc----hhhh
Q 044830 92 KLTHLNLSFSYFSGIVPSQISRL--SKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVP----SSLL 165 (801)
Q Consensus 92 ~L~~L~Ls~n~i~~~~p~~l~~l--~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~l~ 165 (801)
+|++|+|++|.+++..+..+... .+|++|++++|. .+....++....++++|++|++++|.+.+... ..+.
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE---EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC---CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 99999999988877666666553 348999988872 12223445555677888888888887665532 2334
Q ss_pred ccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCC
Q 044830 166 NLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDL 244 (801)
Q Consensus 166 ~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 244 (801)
.+ ++|++|++++|.+++... ..++... .+++|++|++++|.+.+ ++..+..+++|
T Consensus 190 ~~--~~L~~L~L~~n~~~~~~~---------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L 245 (592)
T 3ogk_B 190 HN--TSLEVLNFYMTEFAKISP---------------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANL 245 (592)
T ss_dssp HC--CCCCEEECTTCCCSSCCH---------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTC
T ss_pred cC--CCccEEEeeccCCCccCH---------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHH
Confidence 44 566666666655542111 1111111 34555555555555553 55666677777
Q ss_pred CEEEcccccCc---ccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCC-ccCcCCCCCCEEE
Q 044830 245 KFLDLYVCYFD---GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLP-LSAFNLTQLSLLE 320 (801)
Q Consensus 245 ~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 320 (801)
+.|+++.+... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+... ..+..+++|++|+
T Consensus 246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 77777653322 23334566677777777776532 3556667777778888887777654332 2345677888888
Q ss_pred cccccccccCCCCC-CCCCCCEEEccC-----------CcCCcccchh-hcCCCCCCCccEEEccCCCccc
Q 044830 321 LSRNQFVGQLPCHA-SCLPLSHLKLGG-----------NFLDGRIPSW-LFNLSTSENLVELDLSNNKLTG 378 (801)
Q Consensus 321 l~~n~~~~~~~~~~-~~~~L~~L~L~~-----------n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~ 378 (801)
++++...+.++... .+++|++|++++ +.+++..... ... +++|++|+++.+.+++
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG---CQELEYMAVYVSDITN 392 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH---CTTCSEEEEEESCCCH
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh---CccCeEEEeecCCccH
Confidence 77332222222222 567788888873 4444322211 222 5666666665555543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=254.51 Aligned_cols=277 Identities=20% Similarity=0.230 Sum_probs=197.4
Q ss_pred EEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccccc
Q 044830 399 LDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGS 478 (801)
Q Consensus 399 L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 478 (801)
.+++++.++.+|....++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|++++.
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 56666777777666667788888888887765555777788888888888888777777777778888888888887755
Q ss_pred CCccccCCCCccEEECCCCcCCCCCC-ccccCCCCCcEEeCCCC-cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCC
Q 044830 479 IPQIFSKCYDLVALNLNDNELEGKLP-PSLANCGDLEVLDVGNN-KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP 556 (801)
Q Consensus 479 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 556 (801)
.+..|..+++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..+..+++|++|++++|++.+..+..+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l- 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL- 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-
Confidence 55557777888888888888774433 36777788888888877 4666666677777888888888887777655554
Q ss_pred CCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEE
Q 044830 557 SIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTID 636 (801)
Q Consensus 557 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 636 (801)
..+++|++|++++|+++ .+|...+..++.|+.++...+.+....... .........++.++
T Consensus 195 ---~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 195 ---KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE---------------LSTGETNSLIKKFT 255 (353)
T ss_dssp ---TTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------CCCCCCEEE
T ss_pred ---hccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc---------------cccccccchhhccc
Confidence 66778888888888774 556555555555555444433322211100 00011245577888
Q ss_pred ccCCeeee----eccccccccccCceEeCcCccccccCCcc-ccCCCCCCeEeCcCCcceecCCC
Q 044830 637 LSNNRFEG----MIPKEVGKLSSLKLLNFSHNILRGEIPVE-LTSLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 637 Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 696 (801)
|+++.+++ .+|+.++.+++|+.|+|++|+++ .+|.. |..+++|++|++++|++++.+|.
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 88888876 47888999999999999999999 55655 68999999999999999998773
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=253.92 Aligned_cols=251 Identities=21% Similarity=0.208 Sum_probs=223.1
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 474 (801)
....+++++..++.+|....++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 34578888888998888888999999999999998888899999999999999999998888999999999999999999
Q ss_pred ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC-cCCCCcchhccCCCCCCEEEccCCcCcccCCC
Q 044830 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN-KINDAFPYWTATLPRLQVLVLRSNSFHGPIYN 553 (801)
Q Consensus 475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 553 (801)
+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++| .+....+..+..+++|++|++++|.++.. +
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-
Confidence 99777778999999999999999999887788999999999999995 55555566889999999999999999843 2
Q ss_pred CCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccce
Q 044830 554 NVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFT 633 (801)
Q Consensus 554 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 633 (801)
.+..+++|+.|+|++|++++..|.. |. .++.|+
T Consensus 202 ----~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~ 234 (440)
T 3zyj_A 202 ----NLTPLIKLDELDLSGNHLSAIRPGS-FQ------------------------------------------GLMHLQ 234 (440)
T ss_dssp ----CCTTCSSCCEEECTTSCCCEECTTT-TT------------------------------------------TCTTCC
T ss_pred ----ccCCCcccCEEECCCCccCccChhh-hc------------------------------------------cCccCC
Confidence 2378999999999999999766643 22 245789
Q ss_pred EEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecC
Q 044830 634 TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPI 694 (801)
Q Consensus 634 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 694 (801)
.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++....
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 9999999999999999999999999999999999888888999999999999999997644
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7e-27 Score=242.90 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=91.5
Q ss_pred eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc-c
Q 044830 397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ-F 475 (801)
Q Consensus 397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-l 475 (801)
+.++++++.++.+|....+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 455666666666655555666666666666665555556666666666666666665556666666666666666665 5
Q ss_pred cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcc
Q 044830 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG 549 (801)
Q Consensus 476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 549 (801)
....|..|..+++|++|++++|.+++..|..+.++++|++|++++|++.+..+..+..+++|++|++++|++.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 54445556666666666666666665555555556666666666666655554445555555555555555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=9.5e-27 Score=249.88 Aligned_cols=289 Identities=21% Similarity=0.204 Sum_probs=165.6
Q ss_pred CCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEe
Q 044830 18 TKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLN 97 (801)
Q Consensus 18 l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 97 (801)
-..|.....+|.|.|+ |+- ++++++ .+|. .+. ++|++|+|++|.++.. .+..|..+++|++|+
T Consensus 20 ~~~~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 82 (353)
T 2z80_A 20 EESSNQASLSCDRNGI-CKG----------SSGSLN-SIPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALV 82 (353)
T ss_dssp -------CCEECTTSE-EEC----------CSTTCS-SCCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEE
T ss_pred ccCCCccCCCCCCCeE-eeC----------CCCCcc-cccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEE
Confidence 3456556788999987 753 445554 3443 333 5899999999988764 344688899999999
Q ss_pred CCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCc-hhhhccCCCCccEEE
Q 044830 98 LSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVP-SSLLNLSSASLISLS 176 (801)
Q Consensus 98 Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~~~L~~L~ 176 (801)
+++|.+++..|..|+++++|++|++++|. +. ...+..+.++++|++|++++|.+....+ ..+..+ ++|++|+
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l--~~L~~L~ 155 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNY--LS---NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL--TKLQILR 155 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSC--CS---SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC--TTCCEEE
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCc--CC---cCCHhHhCCCccCCEEECCCCCCcccCchhhhccC--CCCcEEE
Confidence 99999988778888888888888888883 22 1222335566666666666665554333 344444 4555555
Q ss_pred ccCC-cCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCc
Q 044830 177 LGNC-FLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFD 255 (801)
Q Consensus 177 L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 255 (801)
+++| .+.+..+..+..+ ++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 156 l~~n~~~~~~~~~~~~~l------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGL------------------------TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp EEESSSCCEECTTTTTTC------------------------CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCccccccCHHHccCC------------------------CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5554 2333333344444 44555555555555444555555555555555555554
Q ss_pred ccCcccccCCCCCCEEEcCCCCCccccCccc---cCCCCCcEeeccCeeeee----eCCccCcCCCCCCEEEcccccccc
Q 044830 256 GQVPASLSNLKQLTVLNLEDNQFSGEFPDVF---GNLSKLTRISLAHLNFTG----QLPLSAFNLTQLSLLELSRNQFVG 328 (801)
Q Consensus 256 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~ 328 (801)
...+..+..+++|++|++++|.+++..+..+ .....++.++++++.+.+ .+|..+..+++|++|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 3222223345555555555555554333322 123445556666555543 245556666777777777777663
Q ss_pred cCCCCC-CCCCCCEEEccCCcCCcccc
Q 044830 329 QLPCHA-SCLPLSHLKLGGNFLDGRIP 354 (801)
Q Consensus 329 ~~~~~~-~~~~L~~L~L~~n~l~~~~~ 354 (801)
..+..+ .+++|++|++++|++.+..|
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 333323 66677777777777766544
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.8e-27 Score=246.57 Aligned_cols=225 Identities=19% Similarity=0.267 Sum_probs=183.3
Q ss_pred ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEEC
Q 044830 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 494 (801)
++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 57888888888887 67777888888888888888888 77888888888888888888888 67888888888888888
Q ss_pred CCCcCCCCCCccccC---------CCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCC
Q 044830 495 NDNELEGKLPPSLAN---------CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPEL 565 (801)
Q Consensus 495 ~~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L 565 (801)
++|++.+.+|..+.. +++|++|++++|++. .+|..+..+++|++|++++|++.+. +. .+..+++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~----~l~~l~~L 231 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GP----AIHHLPKL 231 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CG----GGGGCTTC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-ch----hhccCCCC
Confidence 888888888876654 888888888888887 6677788888888888888888752 22 34778888
Q ss_pred cEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeee
Q 044830 566 RIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGM 645 (801)
Q Consensus 566 ~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 645 (801)
++|++++|++.+.+|..+ . .++.|+.|+|++|.+.+.
T Consensus 232 ~~L~Ls~n~~~~~~p~~~-~------------------------------------------~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIF-G------------------------------------------GRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp CEEECTTCTTCCBCCCCT-T------------------------------------------CCCCCCEEECTTCTTCCB
T ss_pred CEEECcCCcchhhhHHHh-c------------------------------------------CCCCCCEEECCCCCchhh
Confidence 888888888888777431 1 145678888888888888
Q ss_pred ccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcce
Q 044830 646 IPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV 691 (801)
Q Consensus 646 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 691 (801)
+|..++++++|+.|+|++|.+.+.+|..+.++++|+.+++..|.+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888889999999998888888988999999888888866543
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=5.8e-29 Score=287.25 Aligned_cols=409 Identities=15% Similarity=0.169 Sum_probs=190.8
Q ss_pred ccccCCcCCCCCCEEeCCCCcCCC-------ccc---cCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEE
Q 044830 106 IVPSQISRLSKLVALDLSSDIPRT-------KFE---QHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISL 175 (801)
Q Consensus 106 ~~p~~l~~l~~L~~L~Ls~n~~~~-------~~~---~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L 175 (801)
..+..+..+++|++|+++++.... .+. ...++....++++|++|++++|.+.+..+..+......+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 334455677888888887752100 000 0012223336667777777766665555555544211226666
Q ss_pred EccCCcC-cc-CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCccc----CcccccCCCCCCEEEc
Q 044830 176 SLGNCFL-RG-EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGK----IPDTIGNLRDLKFLDL 249 (801)
Q Consensus 176 ~L~~n~l-~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L 249 (801)
+|++|.. .. .++.....+++|++|++++| .+++. ++..+..+++|++|++
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~------------------------~~~~~~~~~l~~~~~~~~~L~~L~L 199 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEES------------------------SFSEKDGKWLHELAQHNTSLEVLNF 199 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTC------------------------EEECCCSHHHHHHHHHCCCCCEEEC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccc------------------------cccCcchhHHHHHHhcCCCccEEEe
Confidence 6666541 10 01111124555555555555 33222 1222333444444444
Q ss_pred ccccCc----ccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeee---eeCCccCcCCCCCCEEEcc
Q 044830 250 YVCYFD----GQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFT---GQLPLSAFNLTQLSLLELS 322 (801)
Q Consensus 250 ~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~l~ 322 (801)
++|.+. +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+... +..+..+..+++|+.|+++
T Consensus 200 ~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (592)
T 3ogk_B 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278 (592)
T ss_dssp TTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET
T ss_pred eccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc
Confidence 444443 1222233344455555555544442 3344444455555554432111 1122233444555555554
Q ss_pred cccccccCCCCC-CCCCCCEEEccCCcCCcccchh-hcCCCCCCCccEEEccCCCcccc-ccccCCCCcccccceeeeEE
Q 044830 323 RNQFVGQLPCHA-SCLPLSHLKLGGNFLDGRIPSW-LFNLSTSENLVELDLSNNKLTGQ-IFQLDQWPVERISSVELRHL 399 (801)
Q Consensus 323 ~n~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~~~~L~~L 399 (801)
++.. +.++..+ .+++|++|++++|.+++..... +. .+++|+.|+++ +.+.+. ++... ..++ +|++|
T Consensus 279 ~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~---~~~~L~~L~L~-~~~~~~~l~~~~-~~~~-----~L~~L 347 (592)
T 3ogk_B 279 YMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ---KCPNLEVLETR-NVIGDRGLEVLA-QYCK-----QLKRL 347 (592)
T ss_dssp TCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT---TCTTCCEEEEE-GGGHHHHHHHHH-HHCT-----TCCEE
T ss_pred ccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH---hCcCCCEEecc-CccCHHHHHHHH-HhCC-----CCCEE
Confidence 4321 1222222 4455555555555544322211 12 24555555555 222211 11110 0011 34444
Q ss_pred EecC-----------CCCCCCCC----CccccccEEEecCCCCCCCCcccccc-CCCCCEEECc----CCCCccc-----
Q 044830 400 DVQS-----------NLLQRLPF----ILSSRIRFLSVSDNKLTGEFPSSICN-LSTIEYLNLS----NNSLSGM----- 454 (801)
Q Consensus 400 ~l~~-----------n~l~~~~~----~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~i~~~----- 454 (801)
++++ +.+++... ..+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 4441 22222111 12456777777666666555555544 6667777775 4455542
Q ss_pred CCccccCCCCCCEEeCCCCc--ccccCCcccc-CCCCccEEECCCCcCCC-CCCccccCCCCCcEEeCCCCcCCCC-cch
Q 044830 455 IPQCLANFDSLSLLDLRKNQ--FRGSIPQIFS-KCYDLVALNLNDNELEG-KLPPSLANCGDLEVLDVGNNKINDA-FPY 529 (801)
Q Consensus 455 ~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~ 529 (801)
++..+.++++|++|+++.|. +++..+..+. .+++|++|++++|.+++ .++..+.++++|++|++++|++++. ++.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 22334556677777765432 4433333222 35667777777666654 2333445666677777777666543 233
Q ss_pred hccCCCCCCEEEccCCcCccc
Q 044830 530 WTATLPRLQVLVLRSNSFHGP 550 (801)
Q Consensus 530 ~~~~l~~L~~L~L~~N~l~~~ 550 (801)
....+++|++|++++|++++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 334566666666666666543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.7e-26 Score=238.53 Aligned_cols=230 Identities=23% Similarity=0.233 Sum_probs=203.2
Q ss_pred ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCC
Q 044830 417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496 (801)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 496 (801)
-+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 367899999888 456543 46899999999999988888899999999999999999988899999999999999999
Q ss_pred Cc-CCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 497 NE-LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 497 n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
|. +....|..+..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF----RDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh----ccCCCccEEECCCCcc
Confidence 98 877778899999999999999999999999999999999999999999987655444 7899999999999999
Q ss_pred CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830 576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655 (801)
Q Consensus 576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 655 (801)
++..+ ..+. .++.|+.|+|++|++++..|..++++++
T Consensus 166 ~~~~~-~~~~------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 166 SSVPE-RAFR------------------------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp CEECT-TTTT------------------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cccCH-HHhc------------------------------------------CccccCEEECCCCcccccCHhHccCccc
Confidence 85443 2121 2457899999999999999999999999
Q ss_pred CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (801)
|+.|+|++|.+++..|..+..+++|++|++++|++.+..+.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 99999999999988778899999999999999999987664
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.4e-25 Score=233.98 Aligned_cols=162 Identities=22% Similarity=0.336 Sum_probs=125.7
Q ss_pred ccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccc-cCCccccCCCCccEE
Q 044830 415 SRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRG-SIPQIFSKCYDLVAL 492 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 492 (801)
++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+..+++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 466666666666665433 467778888888888888887777778888888888888888876 567778888888888
Q ss_pred ECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCC-CCCcEEEcc
Q 044830 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPF-PELRIIDIS 571 (801)
Q Consensus 493 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l-~~L~~LdLs 571 (801)
++++|.+++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+..+ ..+ ++|++|+++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~~~L~~L~L~ 256 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL----QHFPSSLAFLNLT 256 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC----CCCCTTCCEEECT
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH----HhhhccCCEEEcc
Confidence 888888887777788888888888888888888777778888888888888888887666554 555 478888888
Q ss_pred CCcCCccCc
Q 044830 572 RNGFTGLLP 580 (801)
Q Consensus 572 ~N~l~~~~p 580 (801)
+|++++..+
T Consensus 257 ~N~~~~~c~ 265 (306)
T 2z66_A 257 QNDFACTCE 265 (306)
T ss_dssp TCCEECSGG
T ss_pred CCCeecccC
Confidence 888876544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.7e-25 Score=244.27 Aligned_cols=252 Identities=22% Similarity=0.214 Sum_probs=216.4
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
....++.++..++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888887 5666554 689999999999999889999999999999999999999888999999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|++++..+..|.++++|++|++++|++.+..+..+..+++|+.|++++|...+.++.. .+..+++|++|+|++|++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcc
Confidence 99999877788999999999999999999888889999999999999996554444432 347899999999999999
Q ss_pred CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830 576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655 (801)
Q Consensus 576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 655 (801)
++. |. + ..++.|+.|||++|++++..|..|.++++
T Consensus 209 ~~~-~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 243 (452)
T 3zyi_A 209 KDM-PN--L------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSS 243 (452)
T ss_dssp SSC-CC--C------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTT
T ss_pred ccc-cc--c------------------------------------------cccccccEEECcCCcCcccCcccccCccC
Confidence 843 41 1 11467899999999999999999999999
Q ss_pred CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-CCCCCcCcCcCCCCCCCCCCC
Q 044830 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-KQFDSFQNDSFIGNLGLCGFA 718 (801)
Q Consensus 656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~~ 718 (801)
|+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+....+.||+.-|...
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999999999999999999999999999655543 235556666788999877654
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1e-27 Score=252.44 Aligned_cols=248 Identities=21% Similarity=0.234 Sum_probs=188.7
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCC-CCCccccc-------cCCCCCEEECcCCCCcccCCccc--cCCCC
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLT-GEFPSSIC-------NLSTIEYLNLSNNSLSGMIPQCL--ANFDS 464 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~i~~~~~~~l--~~l~~ 464 (801)
+++.+++++|.+ .++......++.|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+ ..+++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred CceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 566666677766 444333455888888888884 45565554 68889999999999988888765 78889
Q ss_pred CCEEeCCCCcccccCCccccCC-----CCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCC--cchhc--cCCC
Q 044830 465 LSLLDLRKNQFRGSIPQIFSKC-----YDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDA--FPYWT--ATLP 535 (801)
Q Consensus 465 L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~--~~l~ 535 (801)
|++|++++|.+++. |..+..+ ++|++|++++|++++..|..+.++++|++|++++|++.+. .+..+ ..++
T Consensus 123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 99999999998876 7777666 8899999999999888778888899999999999987764 23334 7888
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEE
Q 044830 536 RLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMI 615 (801)
Q Consensus 536 ~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (801)
+|++|++++|++.+... .....+..+++|++|++++|++++.+|...+.
T Consensus 202 ~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------ 250 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRDAAGAPSCD------------------------------ 250 (312)
T ss_dssp TCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC------------------------------
T ss_pred CCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCcccchhhhh------------------------------
Confidence 99999999998873210 00011246788999999999998776532111
Q ss_pred EEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830 616 LTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 616 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 692 (801)
.++.|+.|||++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|++|++++|++++
T Consensus 251 ------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 ------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 1356889999999998 7777776 8899999999999876 66 8899999999999999876
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=8.8e-25 Score=241.86 Aligned_cols=252 Identities=20% Similarity=0.226 Sum_probs=216.8
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
....++.++..++ .+|..+. +.++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4568888888888 5676554 689999999999998888999999999999999999998888999999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|++++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|...+.++.. .+..+++|++|++++|++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcC
Confidence 99999777778999999999999999999988889999999999999996554444332 347899999999999999
Q ss_pred CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830 576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655 (801)
Q Consensus 576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 655 (801)
+ .+|. + ..++.|+.|||++|++++..|..|.++++
T Consensus 198 ~-~~~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 198 R-EIPN--L------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp S-SCCC--C------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred c-cccc--c------------------------------------------CCCcccCEEECCCCccCccChhhhccCcc
Confidence 7 4442 1 11467899999999999999999999999
Q ss_pred CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC-CCCCCcCcCcCCCCCCCCCCC
Q 044830 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG-KQFDSFQNDSFIGNLGLCGFA 718 (801)
Q Consensus 656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~~ 718 (801)
|+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+......+||.-|...
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 999999999999999999999999999999999999655543 235556666788999888653
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6.2e-29 Score=287.20 Aligned_cols=265 Identities=17% Similarity=0.139 Sum_probs=139.8
Q ss_pred CCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCC-CCc-c------------cccccCCC
Q 044830 26 DCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFN-GTK-I------------SSNFGQFT 91 (801)
Q Consensus 26 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~-~------------~~~~~~l~ 91 (801)
-|++|.++.. ...+.++++..... . +...+..+++|++|+|+++... ... . +..+..++
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~~--~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYAV--S-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTSS--C-HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHhhh----hhceEEeecccccc--C-HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 4668998832 23345666554321 1 1125678899999999987521 111 1 11234677
Q ss_pred CCCEEeCCCCCCccccccCCc-CCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCC
Q 044830 92 KLTHLNLSFSYFSGIVPSQIS-RLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSA 170 (801)
Q Consensus 92 ~L~~L~Ls~n~i~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~ 170 (801)
+|++|+|++|.+++..+..+. .+++|++|++++|. .+....++....++++|++|++++|.+.+..+..+..+
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~--- 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF--- 179 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE---EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS---
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC---CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH---
Confidence 888888888888776665564 57888888888772 11222345555667777777777776665554444332
Q ss_pred CccEEEccCCcCccCCCccCCCCCCCCEEeccCCC--CCccCCCCCC-CCCCCCEEEccCccCcccCcccccCCCCCCEE
Q 044830 171 SLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNG--LLTGNLPTSN-WSSPLRILDLSITKFSGKIPDTIGNLRDLKFL 247 (801)
Q Consensus 171 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 247 (801)
...+++|++|++++|. +....+.... .+++|++|++++|...+.++..+..+++|+.|
T Consensus 180 -------------------~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 180 -------------------PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp -------------------CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred -------------------hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 1234455555555542 0000011111 23555555555552212245555566666666
Q ss_pred Eccccc-------CcccCcccccCCCCCCEE-EcCCCCCccccCccccCCCCCcEeeccCeeeeeeCC-ccCcCCCCCCE
Q 044830 248 DLYVCY-------FDGQVPASLSNLKQLTVL-NLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLP-LSAFNLTQLSL 318 (801)
Q Consensus 248 ~L~~n~-------l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 318 (801)
++..+. +.+ ++..+.++++|+.| .+.... ...++..+..+++|++|++++|.+.+... ..+..+++|++
T Consensus 241 ~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp ECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred ccccccCccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence 644332 222 23345666666666 232221 12333444455666666666665443211 11335566666
Q ss_pred EEcccc
Q 044830 319 LELSRN 324 (801)
Q Consensus 319 L~l~~n 324 (801)
|++++|
T Consensus 319 L~l~~~ 324 (594)
T 2p1m_B 319 LWVLDY 324 (594)
T ss_dssp EEEEGG
T ss_pred EeCcCc
Confidence 666655
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.4e-24 Score=241.57 Aligned_cols=262 Identities=26% Similarity=0.296 Sum_probs=170.8
Q ss_pred CCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccce
Q 044830 315 QLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSV 394 (801)
Q Consensus 315 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 394 (801)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. . +++|++|++++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~-~lp~---~---l~~L~~L~Ls~N~l~----------------- 94 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-SLPA---L---PPELRTLEVSGNQLT----------------- 94 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCS-CCCC---C---CTTCCEEEECSCCCS-----------------
T ss_pred CCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCC-CCCC---c---CCCCCEEEcCCCcCC-----------------
Confidence 4667777777766 4443332 56666666666665 3443 1 455666666666554
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 474 (801)
.++. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|+
T Consensus 95 -------------~lp~-~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 95 -------------SLPV-LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp -------------CCCC-CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred -------------cCCC-CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence 3332 34566777777776664 333 45667777777777764 3432 3677777777777
Q ss_pred ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554 (801)
Q Consensus 475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 554 (801)
+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|++.+..+ .+++|+.|++++|.+... +
T Consensus 153 l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l-~-- 217 (622)
T 3g06_A 153 LAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-P-- 217 (622)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC-C--
T ss_pred CCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc-C--
Confidence 764 333 24567777777777764 44 345777777777777765322 246777888888777632 1
Q ss_pred CCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceE
Q 044830 555 VPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTT 634 (801)
Q Consensus 555 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 634 (801)
..+++|+.|++++|++++ +|.. ++.|+.
T Consensus 218 -----~~~~~L~~L~Ls~N~L~~-lp~~----------------------------------------------l~~L~~ 245 (622)
T 3g06_A 218 -----ALPSGLKELIVSGNRLTS-LPVL----------------------------------------------PSELKE 245 (622)
T ss_dssp -----CCCTTCCEEECCSSCCSC-CCCC----------------------------------------------CTTCCE
T ss_pred -----CCCCCCCEEEccCCccCc-CCCC----------------------------------------------CCcCcE
Confidence 224678888888888774 4411 345778
Q ss_pred EEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCC
Q 044830 635 IDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 635 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (801)
|+|++|+|+ .+|. .+++|+.|+|++|.|+ .+|..+.++++|+.|+|++|+++|.+|.
T Consensus 246 L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 246 LMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred EECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 888888887 4554 5678888888888888 6788888888888888888888887775
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=7.7e-24 Score=218.79 Aligned_cols=213 Identities=20% Similarity=0.234 Sum_probs=131.1
Q ss_pred CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG 519 (801)
Q Consensus 440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 519 (801)
+|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444444344444455555555554444444444455555555555555554444445555555555555
Q ss_pred CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830 520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599 (801)
Q Consensus 520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~ 599 (801)
+|++.+..+..+..+++|++|++++|++.+.. +|..+..+++|+.|++++|++++..+.. +..+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L--------- 175 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM--------- 175 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTC---------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHH-hhhhhhc---------
Confidence 55555544444555555556666555554421 1222366777777888888777554432 3433332
Q ss_pred ccccccCCCCceeeEEEEeccchhhhhhhcccce-EEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCC
Q 044830 600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFT-TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT 678 (801)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 678 (801)
+.+. .|++++|++++..+..+.. .+|+.|+|++|++++..+..+..++
T Consensus 176 ------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 176 ------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp ------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred ------------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccc
Confidence 2222 7999999999776665554 5899999999999988777889999
Q ss_pred CCCeEeCcCCcceecCCC
Q 044830 679 ALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 679 ~L~~L~ls~N~l~g~iP~ 696 (801)
+|+.|++++|++++..|.
T Consensus 225 ~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 225 SLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp SCCEEECCSSCBCCCTTT
T ss_pred cccEEEccCCcccccCCc
Confidence 999999999999998875
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-25 Score=236.16 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=174.1
Q ss_pred CCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccC
Q 044830 220 LRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAH 299 (801)
Q Consensus 220 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 299 (801)
++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566666554444445566778888888888877767777888888888888888775544 77778888888888
Q ss_pred eeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCcccc
Q 044830 300 LNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQ 379 (801)
Q Consensus 300 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 379 (801)
|.+.+.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+.. +++|++|++++|.+++.
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGC---RSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGG---GSSEEEEECTTSCCCEE
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhc---cCCCCEEECCCCCCCcc
Confidence 8877532 2377888888888777544332 456777777777777655555554 56777777777776654
Q ss_pred ccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccc
Q 044830 380 IFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCL 459 (801)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l 459 (801)
.+..... .+++|++|++++|.+++. + ....+++|++|++++|.+++..+ .+
T Consensus 160 ~~~~~~~--------------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~ 210 (317)
T 3o53_A 160 NFAELAA--------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EF 210 (317)
T ss_dssp EGGGGGG--------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GG
T ss_pred cHHHHhh--------------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hh
Confidence 3332211 134666677777766643 2 22346777777777777775433 46
Q ss_pred cCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC-CCCCccccCCCCCcEEeCCCC
Q 044830 460 ANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE-GKLPPSLANCGDLEVLDVGNN 521 (801)
Q Consensus 460 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n 521 (801)
..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.|+++++
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 77777777777777777 45666777777777888777777 566667777777777777643
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-25 Score=235.75 Aligned_cols=266 Identities=19% Similarity=0.181 Sum_probs=187.7
Q ss_pred CCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcc
Q 044830 243 DLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELS 322 (801)
Q Consensus 243 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 322 (801)
.++.++++.+.+.......+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556677777765555666677899999999999998888899999999999999999987655 7889999999999
Q ss_pred cccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEec
Q 044830 323 RNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQ 402 (801)
Q Consensus 323 ~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 402 (801)
+|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~------~~~L~~L~l~~N~l~~~~~~~~------------------ 140 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSCSR------GQGKKNIYLANNKITMLRDLDE------------------ 140 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEECC------CSSCEEEECCSSCCCSGGGBCT------------------
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCccc------cCCCCEEECCCCCCCCccchhh------------------
Confidence 99887533 2366777777777776433321 3456666666666554322211
Q ss_pred CCCCCCCCCCccccccEEEecCCCCCCCCcccc-ccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCc
Q 044830 403 SNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSI-CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ 481 (801)
Q Consensus 403 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 481 (801)
..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ...+++|++|++++|++++. |.
T Consensus 141 ---------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~ 208 (317)
T 3o53_A 141 ---------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GP 208 (317)
T ss_dssp ---------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CG
T ss_pred ---------hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hh
Confidence 124567777777777776655555 367788888888888775522 23477788888888887754 44
Q ss_pred cccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC-CCcchhccCCCCCCEEEccCC-cCcccC
Q 044830 482 IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN-DAFPYWTATLPRLQVLVLRSN-SFHGPI 551 (801)
Q Consensus 482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 551 (801)
.+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +..+.++..+++|+.|+++++ .+.|..
T Consensus 209 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 4777778888888888877 45666777778888888888777 666777777777777777743 444433
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.4e-25 Score=245.05 Aligned_cols=222 Identities=21% Similarity=0.229 Sum_probs=185.4
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 4589999999999998888889999999999999999987665 8889999999999999885432 37899999
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N 573 (801)
+++|.+++..+. .+++|+.|++++|++.+..|..+..+++|+.|+|++|.+++..+..+ ...+++|+.|+|++|
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYN 179 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTS
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecCCC
Confidence 999999876554 45789999999999999888888999999999999999988766544 136889999999999
Q ss_pred cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc
Q 044830 574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL 653 (801)
Q Consensus 574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 653 (801)
.+++..+.. .++.|+.|||++|.+++.+| .++.+
T Consensus 180 ~l~~~~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l 213 (487)
T 3oja_A 180 FIYDVKGQV---------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSA 213 (487)
T ss_dssp CCCEEECCC---------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred ccccccccc---------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCC
Confidence 988652210 14678999999999997655 48899
Q ss_pred ccCceEeCcCccccccCCccccCCCCCCeEeCcCCcce-ecCC
Q 044830 654 SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLV-GPIP 695 (801)
Q Consensus 654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~iP 695 (801)
++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 999999999999995 7888999999999999999998 5555
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=8e-27 Score=245.56 Aligned_cols=269 Identities=20% Similarity=0.165 Sum_probs=182.9
Q ss_pred CCCCCCCCCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCccccccc-------CC
Q 044830 18 TKSWNKDGDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFG-------QF 90 (801)
Q Consensus 18 l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-------~l 90 (801)
..+|.....|+.+..+.......++++++++++.+ .++. .+... |++|+|++|.++...++..+. .+
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l 94 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI 94 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc
Confidence 45676666777776654332234566677777777 4443 34433 777777777775444555454 67
Q ss_pred CCCCEEeCCCCCCccccccCC--cCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccC
Q 044830 91 TKLTHLNLSFSYFSGIVPSQI--SRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLS 168 (801)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~ 168 (801)
++|++|+|++|.+++.+|..+ ..+++|++|++++|. +.+. |..+..+.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----------------------------l~~~-~~~~~~l~ 144 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-----------------------------WATR-DAWLAELQ 144 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-----------------------------CSSS-SSHHHHHH
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-----------------------------Ccch-hHHHHHHH
Confidence 778888888887777777665 677777777777762 2222 22222220
Q ss_pred ---CCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccC---CCCC--CCCCCCCEEEccCccCcc--cCc-cc
Q 044830 169 ---SASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGN---LPTS--NWSSPLRILDLSITKFSG--KIP-DT 237 (801)
Q Consensus 169 ---~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~---~~~~--~~~~~L~~L~Ls~n~l~~--~~~-~~ 237 (801)
.++|++|++++|.+.+..+..+..+++|++|++++|+.. +. .+.. ..+++|++|++++|.+++ .++ ..
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 146666666666666666666777777777777777432 21 1111 356778888888887773 222 34
Q ss_pred ccCCCCCCEEEcccccCcccCc-ccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCC
Q 044830 238 IGNLRDLKFLDLYVCYFDGQVP-ASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQL 316 (801)
Q Consensus 238 l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 316 (801)
+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 5678899999999999987765 45667899999999999998 6677666 8899999999999865 65 8889999
Q ss_pred CEEEcccccccc
Q 044830 317 SLLELSRNQFVG 328 (801)
Q Consensus 317 ~~L~l~~n~~~~ 328 (801)
++|++++|++++
T Consensus 299 ~~L~L~~N~l~~ 310 (312)
T 1wwl_A 299 GNLSLKGNPFLD 310 (312)
T ss_dssp EEEECTTCTTTC
T ss_pred CEEeccCCCCCC
Confidence 999999998875
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=6.5e-23 Score=233.26 Aligned_cols=114 Identities=23% Similarity=0.270 Sum_probs=59.8
Q ss_pred CCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeecc
Q 044830 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLA 298 (801)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 298 (801)
.++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 3566666666665 4555443 56666666666665 2333 34566666666666553 333 44556666666
Q ss_pred CeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCC
Q 044830 299 HLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLD 350 (801)
Q Consensus 299 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~ 350 (801)
+|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~--l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLA 154 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC--CCCCCEEECcCCcCC
Confidence 665553 232 34555555555555543 2221 244444455444444
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=8.5e-23 Score=210.03 Aligned_cols=216 Identities=21% Similarity=0.226 Sum_probs=121.2
Q ss_pred CCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccCCCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCc
Q 044830 25 GDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLLHHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFS 104 (801)
Q Consensus 25 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 104 (801)
.++|.|.|+.|.-. +.++.+++++++++. ++. .+. +++++|+|++|.++.. .+..|..+++|++|+|++|.++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 58999999999632 456788999988863 443 332 5788888888888765 3446788888888888888887
Q ss_pred cccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCcc
Q 044830 105 GIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRG 184 (801)
Q Consensus 105 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 184 (801)
+..+..|.++++|++|++++|. +....+..+..+ ++|++|++++|.+++
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~-----------------------------l~~~~~~~~~~l--~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNK-----------------------------LQALPIGVFDQL--VNLAELRLDRNQLKS 123 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSC-----------------------------CCCCCTTTTTTC--SSCCEEECCSSCCCC
T ss_pred eeChhhhcCCCCCCEEECCCCc-----------------------------CCcCCHhHcccc--cCCCEEECCCCccCe
Confidence 6655666777777777777762 222222333444 455555555555554
Q ss_pred CCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccC
Q 044830 185 EFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSN 264 (801)
Q Consensus 185 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 264 (801)
..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 44444455555555555555222111001113344444444444444333333444444444444444444333333444
Q ss_pred CCCCCEEEcCCCCC
Q 044830 265 LKQLTVLNLEDNQF 278 (801)
Q Consensus 265 l~~L~~L~L~~n~l 278 (801)
+++|+.|++++|.+
T Consensus 204 l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 204 LEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCB
T ss_pred ccCCCEEEecCCCe
Confidence 44444444444443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.7e-24 Score=238.89 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccc
Q 044830 267 QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFV 327 (801)
Q Consensus 267 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 327 (801)
+|++|+|++|.+.+..|..|..+++|++|++++|.+.+..| +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence 55566666665555555555556666666666665554443 555555666666555554
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=3.9e-26 Score=263.68 Aligned_cols=132 Identities=18% Similarity=0.153 Sum_probs=64.1
Q ss_pred CCCCCCEEEcccccCcccCccccc-CCCCCCEEEcCCC-CCccc-cCccccCCCCCcEeeccCeeeeeeCCccCc----C
Q 044830 240 NLRDLKFLDLYVCYFDGQVPASLS-NLKQLTVLNLEDN-QFSGE-FPDVFGNLSKLTRISLAHLNFTGQLPLSAF----N 312 (801)
Q Consensus 240 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~ 312 (801)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+.++. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 445555555555555544444443 4555666666555 33221 223333556666666666655543332222 4
Q ss_pred CCCCCEEEccccc--cccc-CCCCC-CCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCC
Q 044830 313 LTQLSLLELSRNQ--FVGQ-LPCHA-SCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNN 374 (801)
Q Consensus 313 l~~L~~L~l~~n~--~~~~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n 374 (801)
+++|++|++++|. +... ++... .+++|++|++++|...+.++..+.. +++|++|+++.+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~---~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR---APQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH---CTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc---CCcceEcccccc
Confidence 4566666666654 1100 00011 3456666666666322234444444 566666665544
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.4e-22 Score=205.49 Aligned_cols=205 Identities=24% Similarity=0.265 Sum_probs=128.2
Q ss_pred CCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC
Q 044830 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN 520 (801)
Q Consensus 441 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 520 (801)
.+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344555555444 2332222 3455555555555544444455555555555555555544334445555555555555
Q ss_pred CcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcc
Q 044830 521 NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDL 600 (801)
Q Consensus 521 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~ 600 (801)
|++.+..+..+..+++|++|++++|++.+..+..+ ..+++|++|++++|++++. |...+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~-~~~~~~--------------- 154 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQSL-PKGVFD--------------- 154 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCC-CTTTTT---------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh----CcCcCCCEEECCCCcCCcc-CHhHcc---------------
Confidence 55555555555555666666666666554433333 5667777777777776633 322111
Q ss_pred cccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCC
Q 044830 601 DYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTAL 680 (801)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 680 (801)
.++.|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|
T Consensus 155 ---------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 155 ---------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ---------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 14567888888888887777788899999999999999998777778999999
Q ss_pred CeEeCcCCcceecCC
Q 044830 681 SVLNLSFNQLVGPIP 695 (801)
Q Consensus 681 ~~L~ls~N~l~g~iP 695 (801)
+.|++++|++.+..+
T Consensus 208 ~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 208 KMLQLQENPWDCTCN 222 (270)
T ss_dssp CEEECCSSCBCCSSS
T ss_pred CEEEecCCCeeCCCc
Confidence 999999999887654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.2e-22 Score=204.96 Aligned_cols=222 Identities=16% Similarity=0.193 Sum_probs=162.8
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
.+..+++..+.+.+. ..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344455555555433 234566777777777777763 22 366777777777777777652 366777778888888
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|.+++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF----DKLTNLTELDLSYNQL 169 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh----ccCccCCEEECCCCCc
Confidence 887776666667777888888888888877777777778888888888887775544333 6778888888888888
Q ss_pred CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830 576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655 (801)
Q Consensus 576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 655 (801)
++..+. .+. .++.|+.|++++|++++..|..++.+++
T Consensus 170 ~~~~~~-~~~------------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 170 QSLPEG-VFD------------------------------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp CCCCTT-TTT------------------------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CccCHH-Hhc------------------------------------------CCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 754442 121 1456789999999999888888899999
Q ss_pred CceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCC
Q 044830 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQG 697 (801)
Q Consensus 656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 697 (801)
|+.|+|++|.+.+. ++.|+.++++.|.++|.||..
T Consensus 207 L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 207 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 99999999998865 446889999999999999964
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.2e-22 Score=205.00 Aligned_cols=208 Identities=19% Similarity=0.239 Sum_probs=164.9
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 5677788888887763 2 3477788888888888888753 3677888888888888888877777788888888888
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N 573 (801)
+++|++++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF----DKLTQLKDLRLYQN 191 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh----cCCccCCEEECCCC
Confidence 88888887777778888888899998888888877778888889999999988886554433 77889999999999
Q ss_pred cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc
Q 044830 574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL 653 (801)
Q Consensus 574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 653 (801)
++++..|.. +. .++.|+.|++++|.+.+. +
T Consensus 192 ~l~~~~~~~-~~------------------------------------------~l~~L~~L~l~~N~~~~~-------~ 221 (272)
T 3rfs_A 192 QLKSVPDGV-FD------------------------------------------RLTSLQYIWLHDNPWDCT-------C 221 (272)
T ss_dssp CCSCCCTTT-TT------------------------------------------TCTTCCEEECCSSCBCCC-------T
T ss_pred cCCccCHHH-Hh------------------------------------------CCcCCCEEEccCCCcccc-------C
Confidence 988655522 22 145678999999988754 4
Q ss_pred ccCceEeCcCccccccCCccccCCCC
Q 044830 654 SSLKLLNFSHNILRGEIPVELTSLTA 679 (801)
Q Consensus 654 ~~L~~L~Ls~N~l~~~ip~~l~~l~~ 679 (801)
++|+.|+++.|.++|.+|.+++.+..
T Consensus 222 ~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cHHHHHHHHHHhCCCcccCcccccCC
Confidence 47889999999999999998887664
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-23 Score=226.29 Aligned_cols=242 Identities=17% Similarity=0.195 Sum_probs=167.1
Q ss_pred ccccEEEecCCCCCCCCc----cccccCC-CCCEEECcCCCCcccCCccccCC-----CCCCEEeCCCCcccccCCcc--
Q 044830 415 SRIRFLSVSDNKLTGEFP----SSICNLS-TIEYLNLSNNSLSGMIPQCLANF-----DSLSLLDLRKNQFRGSIPQI-- 482 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~-- 482 (801)
++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 457788888888776655 5666777 78888888888877666666554 78888888888887665553
Q ss_pred --ccCC-CCccEEECCCCcCCCCCCccc----cC-CCCCcEEeCCCCcCCCCcc----hhccCCC-CCCEEEccCCcCcc
Q 044830 483 --FSKC-YDLVALNLNDNELEGKLPPSL----AN-CGDLEVLDVGNNKINDAFP----YWTATLP-RLQVLVLRSNSFHG 549 (801)
Q Consensus 483 --~~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~ 549 (801)
+..+ ++|++|++++|.+++..+..+ .. +++|++|++++|++.+..+ ..+..++ +|++|+|++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3334 788888888888876655443 33 3688888888888875433 3345555 88888888888876
Q ss_pred cCCCCCCCCCCCC-CCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhh
Q 044830 550 PIYNNVPSIKRPF-PELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERV 628 (801)
Q Consensus 550 ~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (801)
..+..+...+..+ ++|+.|||++|++++.....+...+.. .
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~--------------------------------------~ 223 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--------------------------------------I 223 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH--------------------------------------S
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc--------------------------------------C
Confidence 5543332223445 488888888888876444332222211 1
Q ss_pred cccceEEEccCCeeeeecc----ccccccccCceEeCcCcccccc-------CCccccCCCCCCeEeCcCCcceecC
Q 044830 629 LNIFTTIDLSNNRFEGMIP----KEVGKLSSLKLLNFSHNILRGE-------IPVELTSLTALSVLNLSFNQLVGPI 694 (801)
Q Consensus 629 l~~L~~LdLs~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~-------ip~~l~~l~~L~~L~ls~N~l~g~i 694 (801)
.+.|+.|||++|++++..+ ..+..+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++.+..
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 2468889999998887544 4456778899999999985433 3456778888999999999887653
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.2e-21 Score=200.36 Aligned_cols=208 Identities=24% Similarity=0.231 Sum_probs=119.8
Q ss_pred CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCC
Q 044830 66 HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTE 145 (801)
Q Consensus 66 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 145 (801)
++|++|+|++|.++.. .+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-------------------- 86 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-------------------- 86 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC--------------------
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC--------------------
Confidence 3566666666666543 2334666666666666666666555555666666666666655
Q ss_pred CCEEeCCCccCCCCCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEc
Q 044830 146 LRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDL 225 (801)
Q Consensus 146 L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L 225 (801)
.+.+..+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 87 ---------~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------------- 134 (276)
T 2z62_A 87 ---------PIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--------------------- 134 (276)
T ss_dssp ---------CCCEECTTTTTTC--TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS---------------------
T ss_pred ---------ccCccChhhhcCC--ccccEEECCCCCccccCchhcccCCCCCEEECcCC---------------------
Confidence 2333333444444 55555555555555444434455555555555554
Q ss_pred cCccCcc-cCcccccCCCCCCEEEcccccCcccCcccccCCCCCC----EEEcCCCCCccccCccccCCCCCcEeeccCe
Q 044830 226 SITKFSG-KIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLKQLT----VLNLEDNQFSGEFPDVFGNLSKLTRISLAHL 300 (801)
Q Consensus 226 s~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 300 (801)
.+++ .+|..+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+.+..+..+. ..+|++|++++|
T Consensus 135 ---~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n 210 (276)
T 2z62_A 135 ---LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTN 210 (276)
T ss_dssp ---CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSS
T ss_pred ---ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCC
Confidence 3332 2355566666666666666666655555555444444 667777776654444443 336777777777
Q ss_pred eeeeeCCccCcCCCCCCEEEcccccccccC
Q 044830 301 NFTGQLPLSAFNLTQLSLLELSRNQFVGQL 330 (801)
Q Consensus 301 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 330 (801)
.+++..+..+..+++|++|++++|++.+..
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ceeecCHhHhcccccccEEEccCCcccccC
Confidence 777554445566777777777777776543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2e-21 Score=201.47 Aligned_cols=205 Identities=21% Similarity=0.250 Sum_probs=125.0
Q ss_pred cccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCc
Q 044830 435 ICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLE 514 (801)
Q Consensus 435 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 514 (801)
+.+++++++++++++.++ .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344555566666665555 2333222 455666666666655555556666666666666666553322 14556666
Q ss_pred EEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccC
Q 044830 515 VLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGD 594 (801)
Q Consensus 515 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~ 594 (801)
+|++++|++. .+|..+..+++|++|++++|++++..+..+ ..+++|++|+|++|++++..+ ..|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~----~~l~~L~~L~L~~N~l~~~~~-~~~~--------- 145 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL----RGLGELQELYLKGNELKTLPP-GLLT--------- 145 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT----TTCTTCCEEECTTSCCCCCCT-TTTT---------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH----cCCCCCCEEECCCCCCCccCh-hhcc---------
Confidence 6666666664 334455566666666666666654433333 566667777777777663322 2221
Q ss_pred CCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccc
Q 044830 595 NDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVEL 674 (801)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 674 (801)
.++.|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus 146 ---------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 146 ---------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp ---------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ---------------------------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 1345677788888877666666777888888888888887 677777
Q ss_pred cCCCCCCeEeCcCCcceec
Q 044830 675 TSLTALSVLNLSFNQLVGP 693 (801)
Q Consensus 675 ~~l~~L~~L~ls~N~l~g~ 693 (801)
..+.+|+.+++++|++...
T Consensus 192 ~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTCCCSEEECCSCCBCCS
T ss_pred cccccCCeEEeCCCCccCc
Confidence 7777888888888887653
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.9e-23 Score=222.66 Aligned_cols=212 Identities=22% Similarity=0.209 Sum_probs=140.3
Q ss_pred CCCcccceeEeCCCCCcEEEEEcCCCCCCcccCCCcccccC--CCCCeeeCCCCCCCCCcccccccCCCCCCEEeCCCCC
Q 044830 25 GDCCSWDGIICDEMTGHVIGLDLSSSWLLGTLHPNSTLFLL--HHLQKLNLACNDFNGTKISSNFGQFTKLTHLNLSFSY 102 (801)
Q Consensus 25 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~ 102 (801)
.-|.+|.++.|+. ..++.+|++++.+.+. .+..+ ++++.|++++|.+.+. .+. +..+++|++|++++|.
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTCE
T ss_pred HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEccCCC
Confidence 3466899998863 4578899999887632 55666 8899999999988765 333 6678999999999998
Q ss_pred Cccc-cccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCCCCCEEeCCCc-cCCCC-CchhhhccCCCCccEEEccC
Q 044830 103 FSGI-VPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLTELRYLLLDNV-QMFSV-VPSSLLNLSSASLISLSLGN 179 (801)
Q Consensus 103 i~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~L~~L~L~~~-~~~~~-~~~~l~~l~~~~L~~L~L~~ 179 (801)
+++. +|..+..+++|++|++++|. +. ...+..+..+++|++|++++| .+++. .+..+..+ ++|++|++++
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~--l~---~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~--~~L~~L~l~~ 177 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLR--LS---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC--SRLDELNLSW 177 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCB--CC---HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC--TTCCEEECCC
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcc--cC---HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC--CCCCEEcCCC
Confidence 8765 77778888999999998883 22 345667778888888888888 56553 55567777 7788888888
Q ss_pred C-cCccC-CCccCCCCC-CCCEEeccCCC--CCccCCCCCC-CCCCCCEEEccCcc-CcccCcccccCCCCCCEEEcccc
Q 044830 180 C-FLRGE-FPIDIFHFP-FLRQLTLSDNG--LLTGNLPTSN-WSSPLRILDLSITK-FSGKIPDTIGNLRDLKFLDLYVC 252 (801)
Q Consensus 180 n-~l~~~-~~~~l~~l~-~L~~L~Ls~n~--~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n 252 (801)
| .+++. ++..+..++ +|++|++++|. +....++... .+++|++|++++|. +++..+..+.++++|++|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 7 76653 344456666 77777776662 1112222222 34444444444444 33333444444444444444444
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5.1e-23 Score=221.33 Aligned_cols=218 Identities=20% Similarity=0.199 Sum_probs=109.7
Q ss_pred cccEEEecCCCCCCCCccccccC-----CCCCEEECcCCCCcccCCccc----cCC-CCCCEEeCCCCcccccCCccc--
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNL-----STIEYLNLSNNSLSGMIPQCL----ANF-DSLSLLDLRKNQFRGSIPQIF-- 483 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~Ls~n~i~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~~-- 483 (801)
+|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555555554444444443 556666666666554444322 222 556666666666554433332
Q ss_pred --cC-CCCccEEECCCCcCCCCCC----ccccCCC-CCcEEeCCCCcCCCCcchhc----cCC-CCCCEEEccCCcCccc
Q 044830 484 --SK-CYDLVALNLNDNELEGKLP----PSLANCG-DLEVLDVGNNKINDAFPYWT----ATL-PRLQVLVLRSNSFHGP 550 (801)
Q Consensus 484 --~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~i~~~~~~~~----~~l-~~L~~L~L~~N~l~~~ 550 (801)
.. .++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+ ..+ ++|++|+|++|++.+.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 22 2456666666666553222 2233333 56666666666655544332 233 3666666666665543
Q ss_pred CCCCCCCCCCC-CCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhc
Q 044830 551 IYNNVPSIKRP-FPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVL 629 (801)
Q Consensus 551 ~~~~~~~~~~~-l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 629 (801)
....++..+.. .++|+.|||++|++++..+..+..-+ ..+
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~---------------------------------------~~l 252 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK---------------------------------------DSL 252 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT---------------------------------------TTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH---------------------------------------hcC
Confidence 22212211222 24666666666666654443221110 113
Q ss_pred ccceEEEccCCeeeee-------ccccccccccCceEeCcCccccccCCc
Q 044830 630 NIFTTIDLSNNRFEGM-------IPKEVGKLSSLKLLNFSHNILRGEIPV 672 (801)
Q Consensus 630 ~~L~~LdLs~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 672 (801)
+.|+.|+|++|.+.+. ++..+.++++|+.||+++|.+.+..|.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 4466667776663322 334566667777777777777655443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.3e-20 Score=195.21 Aligned_cols=150 Identities=23% Similarity=0.288 Sum_probs=75.3
Q ss_pred eeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830 396 LRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475 (801)
Q Consensus 396 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l 475 (801)
++.++++++.++.++....++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|++++|.+
T Consensus 12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp CCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCC
T ss_pred ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcC
Confidence 33444444444444433344555666666665555555555555666666666655543221 4455555555555555
Q ss_pred cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFH 548 (801)
Q Consensus 476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 548 (801)
+ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..+..+..+++|+.|+|++|+++
T Consensus 90 ~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 4 34444455555555555555555444444555555555555555554444444444444444444444443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6.2e-22 Score=208.04 Aligned_cols=208 Identities=20% Similarity=0.214 Sum_probs=115.3
Q ss_pred CCCCEEECcCCCCcccCCccc--cCCCCCCEEeCCCCcccccCC----ccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830 439 STIEYLNLSNNSLSGMIPQCL--ANFDSLSLLDLRKNQFRGSIP----QIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512 (801)
Q Consensus 439 ~~L~~L~Ls~n~i~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 512 (801)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555554444444 445555555555555544332 22234555555555555555555555555555
Q ss_pred CcEEeCCCCcCCCC---c-chhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhh
Q 044830 513 LEVLDVGNNKINDA---F-PYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLK 588 (801)
Q Consensus 513 L~~L~Ls~n~i~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~ 588 (801)
|++|++++|++.+. . +..+..+++|++|++++|+++.... .....+..+++|++|||++|++++.+|..+ ..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~- 247 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-VCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRC- 247 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-HHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSC-
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-HHHHHHhcCCCCCEEECCCCCCCccchhhH-Hhc-
Confidence 55555555554431 1 1122455566666666665542110 000011345667777777777766555321 000
Q ss_pred hhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccc
Q 044830 589 AMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRG 668 (801)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 668 (801)
..++.|+.|+|++|+++ .+|..+. ++|+.|+|++|++++
T Consensus 248 --------------------------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 248 --------------------------------------MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp --------------------------------------CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred --------------------------------------cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 00245777888888887 5566664 688888888888886
Q ss_pred cCCccccCCCCCCeEeCcCCccee
Q 044830 669 EIPVELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 669 ~ip~~l~~l~~L~~L~ls~N~l~g 692 (801)
. |. +..+++|+.|++++|+++.
T Consensus 287 ~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 A-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred C-ch-hhhCCCccEEECcCCCCCC
Confidence 4 33 5777888888888888764
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.8e-20 Score=190.33 Aligned_cols=182 Identities=20% Similarity=0.230 Sum_probs=165.2
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 474 (801)
..+.++++++.++.+|....++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 45678888888888887777899999999999998888889999999999999999999888889999999999999999
Q ss_pred ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554 (801)
Q Consensus 475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 554 (801)
+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..+++|++|+|++|++.+..+..
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 99888888999999999999999999777777899999999999999999988888999999999999999999766544
Q ss_pred CCCCCCCCCCCcEEEccCCcCCccCc
Q 044830 555 VPSIKRPFPELRIIDISRNGFTGLLP 580 (801)
Q Consensus 555 ~~~~~~~l~~L~~LdLs~N~l~~~~p 580 (801)
+ ..+++|+.|++++|++.+...
T Consensus 175 ~----~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 175 F----DRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp T----TTCTTCCEEECCSCCBCTTST
T ss_pred H----hCCCCCCEEEeeCCceeCCcc
Confidence 4 789999999999999987633
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=7.3e-21 Score=191.80 Aligned_cols=206 Identities=18% Similarity=0.247 Sum_probs=120.5
Q ss_pred CCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCC-CcccCCccccCCCCCCEEeCCC-CcccccCCccc
Q 044830 406 LQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNS-LSGMIPQCLANFDSLSLLDLRK-NQFRGSIPQIF 483 (801)
Q Consensus 406 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~ 483 (801)
++.+|. ..+++++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 444443 34455555555555554444445555555555555554 5444444455555555555554 55554444445
Q ss_pred cCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCC---EEEccCC-cCcccCCCCCCCCC
Q 044830 484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQ---VLVLRSN-SFHGPIYNNVPSIK 559 (801)
Q Consensus 484 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~ 559 (801)
..+++|++|++++|++++ +|. +..+++|+ +|++++| .+.+..+..+
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---- 151 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAF---- 151 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTT----
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-------------------------cccccccccccEEECCCCcchhhcCcccc----
Confidence 555555555555555443 332 44444444 5555555 5544333222
Q ss_pred CCCCCCc-EEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEcc
Q 044830 560 RPFPELR-IIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLS 638 (801)
Q Consensus 560 ~~l~~L~-~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 638 (801)
..+++|+ .|++++|+++ .+|...|. .+.|+.|+|+
T Consensus 152 ~~l~~L~~~L~l~~n~l~-~i~~~~~~-------------------------------------------~~~L~~L~L~ 187 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFT-SVQGYAFN-------------------------------------------GTKLDAVYLN 187 (239)
T ss_dssp TTTBSSEEEEECCSCCCC-EECTTTTT-------------------------------------------TCEEEEEECT
T ss_pred cchhcceeEEEcCCCCCc-ccCHhhcC-------------------------------------------CCCCCEEEcC
Confidence 5566777 7777777776 44433211 1357889999
Q ss_pred CCe-eeeecccccccc-ccCceEeCcCccccccCCccccCCCCCCeEeCcCCc
Q 044830 639 NNR-FEGMIPKEVGKL-SSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ 689 (801)
Q Consensus 639 ~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 689 (801)
+|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 995 887777888888 999999999999985 4443 67788888888763
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=4.3e-21 Score=194.95 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=126.3
Q ss_pred CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG 519 (801)
Q Consensus 440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 519 (801)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666665 3343332 355666666666655555555555555555555555555544445555555555555
Q ss_pred CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830 520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599 (801)
Q Consensus 520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~ 599 (801)
+|++.+..+..+ ..+++|++|+|++|++++..+ ..|.
T Consensus 92 ~n~l~~~~~~~~----------------------------~~l~~L~~L~L~~N~l~~~~~-~~~~-------------- 128 (251)
T 3m19_A 92 NNQLASLPLGVF----------------------------DHLTQLDKLYLGGNQLKSLPS-GVFD-------------- 128 (251)
T ss_dssp TSCCCCCCTTTT----------------------------TTCTTCCEEECCSSCCCCCCT-TTTT--------------
T ss_pred CCcccccChhHh----------------------------cccCCCCEEEcCCCcCCCcCh-hHhc--------------
Confidence 555544444333 445566666666666653322 2111
Q ss_pred ccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCC
Q 044830 600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTA 679 (801)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 679 (801)
.++.|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..+..+++
T Consensus 129 ----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 129 ----------------------------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp ----------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ----------------------------cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 1345778888888888777778889999999999999999888888999999
Q ss_pred CCeEeCcCCcceecCCCCCCCCCc------CcCcCCCCCCCCCCCCCCCCCCC
Q 044830 680 LSVLNLSFNQLVGPIPQGKQFDSF------QNDSFIGNLGLCGFALTQQCSNY 726 (801)
Q Consensus 680 L~~L~ls~N~l~g~iP~~~~~~~~------~~~~~~gn~~lcg~~l~~~c~~~ 726 (801)
|+.|++++|++++..+.-..+..+ ......|+ .+|+.|....|...
T Consensus 181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 999999999998864432111110 11122344 36777767778654
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.6e-22 Score=219.78 Aligned_cols=186 Identities=21% Similarity=0.202 Sum_probs=91.0
Q ss_pred cCCCCCCEEeCCCccCCC----CCchhhhccCCCCccEEEccCCcCccCCCccC----CCC---------CCCCEEeccC
Q 044830 141 KNLTELRYLLLDNVQMFS----VVPSSLLNLSSASLISLSLGNCFLRGEFPIDI----FHF---------PFLRQLTLSD 203 (801)
Q Consensus 141 ~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~Ls~ 203 (801)
..+++|++|++++|.+.. .++..+..+ ++|++|+|++|.+++..+..+ ..+ ++|++|++++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH--TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHC--TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhC--CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 455555555555555544 234444444 555555555555543222211 122 5666666666
Q ss_pred CCCCccCCCC---CC-CCCCCCEEEccCccCcc-----cCcccccCCCCCCEEEcccccCc----ccCcccccCCCCCCE
Q 044830 204 NGLLTGNLPT---SN-WSSPLRILDLSITKFSG-----KIPDTIGNLRDLKFLDLYVCYFD----GQVPASLSNLKQLTV 270 (801)
Q Consensus 204 n~~~~~~~~~---~~-~~~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~ 270 (801)
|.+....++. .+ .+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 6433233331 11 34455555555555541 12224555556666666666554 344555555555666
Q ss_pred EEcCCCCCccc----cCcccc--CCCCCcEeeccCeeeee----eCCccC-cCCCCCCEEEcccccccc
Q 044830 271 LNLEDNQFSGE----FPDVFG--NLSKLTRISLAHLNFTG----QLPLSA-FNLTQLSLLELSRNQFVG 328 (801)
Q Consensus 271 L~L~~n~l~~~----~p~~~~--~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~l~~n~~~~ 328 (801)
|+|++|.+++. ++..+. .+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 66666655543 333332 25555555555555554 244444 334555555555555543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.5e-22 Score=220.04 Aligned_cols=239 Identities=17% Similarity=0.197 Sum_probs=176.3
Q ss_pred cccccEEEecCCCCCCCCc----cccccCCCCCEEECcCCC---CcccCCccc-------cCCCCCCEEeCCCCcccc--
Q 044830 414 SSRIRFLSVSDNKLTGEFP----SSICNLSTIEYLNLSNNS---LSGMIPQCL-------ANFDSLSLLDLRKNQFRG-- 477 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~---i~~~~~~~l-------~~l~~L~~L~L~~n~l~~-- 477 (801)
+++|+.|++++|.+++..+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|+|++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4678888888888876533 346678889999998864 444555444 678899999999998886
Q ss_pred --cCCccccCCCCccEEECCCCcCCCCCCcc----ccCC---------CCCcEEeCCCCcCC-CCcc---hhccCCCCCC
Q 044830 478 --SIPQIFSKCYDLVALNLNDNELEGKLPPS----LANC---------GDLEVLDVGNNKIN-DAFP---YWTATLPRLQ 538 (801)
Q Consensus 478 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~Ls~n~i~-~~~~---~~~~~l~~L~ 538 (801)
.+|..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|++. +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 46677788889999999999886443333 3333 88999999999987 3344 3566788999
Q ss_pred EEEccCCcCcccCCCC-CCCCCCCCCCCcEEEccCCcCCc----cCcHHHHhhhhhhhccCCCCCcccccccCCCCceee
Q 044830 539 VLVLRSNSFHGPIYNN-VPSIKRPFPELRIIDISRNGFTG----LLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYS 613 (801)
Q Consensus 539 ~L~L~~N~l~~~~~~~-~~~~~~~l~~L~~LdLs~N~l~~----~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 613 (801)
+|++++|++....... .+..+..+++|+.|+|++|.++. .+|..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~------------------------------- 239 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA------------------------------- 239 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-------------------------------
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-------------------------------
Confidence 9999999887321000 01123678899999999998862 23321
Q ss_pred EEEEeccchhhhhhhcccceEEEccCCeeeee----ccccc--cccccCceEeCcCccccc----cCCccc-cCCCCCCe
Q 044830 614 MILTYKGVDLEMERVLNIFTTIDLSNNRFEGM----IPKEV--GKLSSLKLLNFSHNILRG----EIPVEL-TSLTALSV 682 (801)
Q Consensus 614 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~ 682 (801)
...++.|+.|+|++|++++. +|..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++
T Consensus 240 ------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 240 ------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp ------------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred ------------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 11246788999999999876 56777 348999999999999998 588877 66899999
Q ss_pred EeCcCCcceecCC
Q 044830 683 LNLSFNQLVGPIP 695 (801)
Q Consensus 683 L~ls~N~l~g~iP 695 (801)
|++++|++++..|
T Consensus 308 L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 308 LELNGNRFSEEDD 320 (386)
T ss_dssp EECTTSBSCTTSH
T ss_pred EEccCCcCCcchh
Confidence 9999999987764
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.8e-20 Score=194.88 Aligned_cols=147 Identities=21% Similarity=0.302 Sum_probs=72.4
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 3455555555555543 22 34555555555555555553322 55555555555555555432 2355555555555
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N 573 (801)
+++|.+++. + .+..+++|++|++++|++.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDN 183 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSS
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCC
Confidence 555555432 2 24555555555555555544332 4444555555555554443211 134444444444444
Q ss_pred cCC
Q 044830 574 GFT 576 (801)
Q Consensus 574 ~l~ 576 (801)
+++
T Consensus 184 ~l~ 186 (308)
T 1h6u_A 184 KIS 186 (308)
T ss_dssp CCC
T ss_pred ccC
Confidence 444
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.9e-20 Score=196.16 Aligned_cols=211 Identities=21% Similarity=0.337 Sum_probs=175.7
Q ss_pred ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCC
Q 044830 417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496 (801)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 496 (801)
+..+.+..+.+.+.+ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 21 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 333445555555432 35578899999999999985 44 58899999999999999986544 89999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830 497 NELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT 576 (801)
Q Consensus 497 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 576 (801)
|.+++. ..+..+++|++|++++|++.+..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|+++
T Consensus 95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 95 NPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCC
T ss_pred CcCCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCC
Confidence 999864 468999999999999999987543 8899999999999999986543 378999999999999998
Q ss_pred ccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccC
Q 044830 577 GLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL 656 (801)
Q Consensus 577 ~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 656 (801)
+..+ +. .++.|+.|++++|++++..+ +..+++|
T Consensus 165 ~~~~---l~------------------------------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 165 DLTP---LA------------------------------------------NLSKLTTLKADDNKISDISP--LASLPNL 197 (308)
T ss_dssp CCGG---GT------------------------------------------TCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred CChh---hc------------------------------------------CCCCCCEEECCCCccCcChh--hcCCCCC
Confidence 5333 21 14578999999999997655 8999999
Q ss_pred ceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830 657 KLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 657 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 692 (801)
+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 198 ~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 999999999997664 8999999999999999986
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=203.61 Aligned_cols=230 Identities=20% Similarity=0.219 Sum_probs=176.1
Q ss_pred CCCCEEECcCCCCcccC-Cc--cccCCCCCCEEeCCCCcccccCCccc--cCCCCccEEECCCCcCCCCCC----ccccC
Q 044830 439 STIEYLNLSNNSLSGMI-PQ--CLANFDSLSLLDLRKNQFRGSIPQIF--SKCYDLVALNLNDNELEGKLP----PSLAN 509 (801)
Q Consensus 439 ~~L~~L~Ls~n~i~~~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~ 509 (801)
..++.+.+.++.++... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35777888887775321 11 12234679999999999999999888 899999999999999997655 34567
Q ss_pred CCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhh
Q 044830 510 CGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKA 589 (801)
Q Consensus 510 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~ 589 (801)
+++|++|++++|++.+..+..+..+++|++|+|++|++.+......+.....+++|++|+|++|+++. +|.... .
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~--- 218 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA-A--- 218 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-H---
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-H---
Confidence 99999999999999999999999999999999999998653111111123678999999999999973 232110 0
Q ss_pred hhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccc---ccCceEeCcCccc
Q 044830 590 MMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKL---SSLKLLNFSHNIL 666 (801)
Q Consensus 590 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l 666 (801)
....++.|++|||++|++++.+|..++.+ ++|+.|+|++|++
T Consensus 219 -----------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 219 -----------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp -----------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred -----------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 11224678999999999999889888887 6999999999999
Q ss_pred cccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcCcCcCCCCC
Q 044830 667 RGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQNDSFIGNL 712 (801)
Q Consensus 667 ~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 712 (801)
+ .+|..+. ++|++|++++|++++. |.-..+..+......||+
T Consensus 264 ~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 E-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred C-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 9 7788775 8999999999999973 332344555555556664
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2e-20 Score=200.00 Aligned_cols=244 Identities=17% Similarity=0.147 Sum_probs=192.6
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCC-ccccCCCCCCE-EeCCC
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIP-QCLANFDSLSL-LDLRK 472 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~-L~L~~ 472 (801)
.-+.++++++.++.+|...++++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+..
T Consensus 10 ~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 10 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45678899999999987778899999999999996656689999999999999999876554 57888988775 66777
Q ss_pred CcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC-CcCCCCcchhccCCC-CCCEEEccCCcCccc
Q 044830 473 NQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN-NKINDAFPYWTATLP-RLQVLVLRSNSFHGP 550 (801)
Q Consensus 473 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~ 550 (801)
|+++...|..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+..+..+. .++.|++++|+++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 999988899999999999999999999977777777778889999965 577776667777764 688999999999854
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcc
Q 044830 551 IYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLN 630 (801)
Q Consensus 551 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 630 (801)
.+.. ....+|+.+++++|+..+.+|...|.. ++
T Consensus 170 ~~~~-----f~~~~L~~l~l~~~n~l~~i~~~~f~~------------------------------------------l~ 202 (350)
T 4ay9_X 170 HNSA-----FNGTQLDELNLSDNNNLEELPNDVFHG------------------------------------------AS 202 (350)
T ss_dssp CTTS-----STTEEEEEEECTTCTTCCCCCTTTTTT------------------------------------------EE
T ss_pred Chhh-----ccccchhHHhhccCCcccCCCHHHhcc------------------------------------------Cc
Confidence 3322 456789999998766556788655433 45
Q ss_pred cceEEEccCCeeeeeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCc
Q 044830 631 IFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQ 689 (801)
Q Consensus 631 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 689 (801)
.|+.||||+|+|+...+..+.+++ .|.+.++.-...+| .+.++++|+.++++++.
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred ccchhhcCCCCcCccChhhhccch---HhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 679999999999966555555544 45544444344677 48899999999998753
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.5e-21 Score=207.96 Aligned_cols=254 Identities=16% Similarity=0.196 Sum_probs=149.0
Q ss_pred CCCeeeCCCCCCCCCcccccccCC--CCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCCccccCchhHhhcCCC
Q 044830 67 HLQKLNLACNDFNGTKISSNFGQF--TKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRTKFEQHTFNNLAKNLT 144 (801)
Q Consensus 67 ~L~~L~Ls~n~~~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 144 (801)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|. + ....++..+..++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~--l--~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV--I--EVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE--E--CHHHHHHHHTTBC
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC--c--CHHHHHHHHhhCC
Confidence 4789999999875 4457777 8999999999999877665 6679999999999883 2 1223677788888
Q ss_pred CCCEEeCCCccCCCCCchhhhccCCCCccEEEccCC-cCccC-CCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCE
Q 044830 145 ELRYLLLDNVQMFSVVPSSLLNLSSASLISLSLGNC-FLRGE-FPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRI 222 (801)
Q Consensus 145 ~L~~L~L~~~~~~~~~~~~l~~l~~~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~ 222 (801)
+|++|++++|.+.+..+..+..+ ++|++|++++| .+++. ++..+..+++|++|++++|.
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~----------------- 179 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF----------------- 179 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTC--TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------
T ss_pred CCCEEeCcCcccCHHHHHHHhcC--CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------------
Confidence 88888888888877777777777 77888888877 55542 34445566666666666661
Q ss_pred EEccCccCccc-CcccccCCC-CCCEEEcccc--cCc-ccCcccccCCCCCCEEEcCCCC-CccccCccccCCCCCcEee
Q 044830 223 LDLSITKFSGK-IPDTIGNLR-DLKFLDLYVC--YFD-GQVPASLSNLKQLTVLNLEDNQ-FSGEFPDVFGNLSKLTRIS 296 (801)
Q Consensus 223 L~Ls~n~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 296 (801)
.+++. ++..+..++ +|++|++++| .++ +.++..+.++++|++|++++|. +++..+..+..+++|++|+
T Consensus 180 ------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 180 ------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred ------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 23221 233344444 4444444444 222 2233334444455555555554 3334444444455555555
Q ss_pred ccCee-eeeeCCccCcCCCCCCEEEcccccccccCCCCC-CC-CCCCEEEccCCcCCcccchhhc
Q 044830 297 LAHLN-FTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SC-LPLSHLKLGGNFLDGRIPSWLF 358 (801)
Q Consensus 297 L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~L~L~~n~l~~~~~~~~~ 358 (801)
+++|. +.......+.++++|++|++++| +.. ..+ .+ ..++.|++++|.+++..|..++
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 55542 11111113444555555555555 111 011 11 2245555566666655555443
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=3.8e-20 Score=186.52 Aligned_cols=195 Identities=18% Similarity=0.179 Sum_probs=144.2
Q ss_pred CCCEEeCCCCcccccCCccccCCCCccEEECCCCc-CCCCCCccccCCCCCcEEeCCC-CcCCCCcchhccCCCCCCEEE
Q 044830 464 SLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNE-LEGKLPPSLANCGDLEVLDVGN-NKINDAFPYWTATLPRLQVLV 541 (801)
Q Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ 541 (801)
+|++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |++.+..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56677777777766555566777777777777775 6655555777778888888887 788777777788888899999
Q ss_pred ccCCcCcccCCCCCCCCCCCCCCCc---EEEccCC-cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEE
Q 044830 542 LRSNSFHGPIYNNVPSIKRPFPELR---IIDISRN-GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILT 617 (801)
Q Consensus 542 L~~N~l~~~~~~~~~~~~~~l~~L~---~LdLs~N-~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (801)
+++|++++ +|. +..+++|+ +|++++| ++++..+ ..|.
T Consensus 112 l~~n~l~~-lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~-------------------------------- 152 (239)
T 2xwt_C 112 IFNTGLKM-FPD-----LTKVYSTDIFFILEITDNPYMTSIPV-NAFQ-------------------------------- 152 (239)
T ss_dssp EEEECCCS-CCC-----CTTCCBCCSEEEEEEESCTTCCEECT-TTTT--------------------------------
T ss_pred CCCCCCcc-ccc-----cccccccccccEEECCCCcchhhcCc-cccc--------------------------------
Confidence 99998876 332 36677777 9999999 8874433 2222
Q ss_pred eccchhhhhhhcccce-EEEccCCeeeeeccccccccccCceEeCcCcc-ccccCCccccCC-CCCCeEeCcCCcceecC
Q 044830 618 YKGVDLEMERVLNIFT-TIDLSNNRFEGMIPKEVGKLSSLKLLNFSHNI-LRGEIPVELTSL-TALSVLNLSFNQLVGPI 694 (801)
Q Consensus 618 ~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~ls~N~l~g~i 694 (801)
.++.|+ .|++++|+++...+..+.. ++|+.|+|++|+ +++..+..|..+ ++|+.|++++|++++ +
T Consensus 153 ----------~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l 220 (239)
T 2xwt_C 153 ----------GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220 (239)
T ss_dssp ----------TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred ----------chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence 245688 9999999999444444544 899999999995 998778889999 999999999999984 6
Q ss_pred CCCCCCCCcCcCcCCC
Q 044830 695 PQGKQFDSFQNDSFIG 710 (801)
Q Consensus 695 P~~~~~~~~~~~~~~g 710 (801)
|.. .|..+......+
T Consensus 221 ~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 221 PSK-GLEHLKELIARN 235 (239)
T ss_dssp CCT-TCTTCSEEECTT
T ss_pred Chh-HhccCceeeccC
Confidence 654 444444433333
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=178.99 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=73.5
Q ss_pred eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830 397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476 (801)
Q Consensus 397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 476 (801)
+.++++++.++.++....+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 45556666655555544555555555555555444444455555555555555555444444445555555555555555
Q ss_pred ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC
Q 044830 477 GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545 (801)
Q Consensus 477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 545 (801)
+..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 443344444455555555555554433333444444444444444444433333334444444444444
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=178.86 Aligned_cols=129 Identities=25% Similarity=0.298 Sum_probs=65.4
Q ss_pred eeeEEEecCCCCCCCCCC---ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCC
Q 044830 395 ELRHLDVQSNLLQRLPFI---LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLR 471 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 471 (801)
+++.|++++|.+++.+.. .+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 445555555555544432 24455555555555554433444555555555555555554444444555555555555
Q ss_pred CCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcC
Q 044830 472 KNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523 (801)
Q Consensus 472 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 523 (801)
+|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 5555544444455555555555555555544444445555555555555544
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=6.1e-19 Score=198.01 Aligned_cols=197 Identities=24% Similarity=0.327 Sum_probs=147.5
Q ss_pred ccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEEC
Q 044830 415 SRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNL 494 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 494 (801)
.+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 378899999999886 66655 378999999999988 556 456889999999999886 666 554 8999999
Q ss_pred CCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCc
Q 044830 495 NDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574 (801)
Q Consensus 495 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~ 574 (801)
++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. + . ++|+.|+|++|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l----~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L----P--ESLEALDVSTNL 191 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C----C--TTCCEEECCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h----h--CCCCEEECcCCC
Confidence 9999886 555 67889999999998877 443 57888999999998886 443 3 3 788889999888
Q ss_pred CCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccc
Q 044830 575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLS 654 (801)
Q Consensus 575 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 654 (801)
|+ .+|. +..++ ......|+.|||++|+|+ .+|..+..++
T Consensus 192 L~-~lp~-~~~~L--------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 192 LE-SLPA-VPVRN--------------------------------------HHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp CS-SCCC-CC----------------------------------------------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred CC-chhh-HHHhh--------------------------------------hcccccceEEecCCCcce-ecCHHHhcCC
Confidence 87 5553 21110 011234588888888888 5777777888
Q ss_pred cCceEeCcCccccccCCccccCCCC
Q 044830 655 SLKLLNFSHNILRGEIPVELTSLTA 679 (801)
Q Consensus 655 ~L~~L~Ls~N~l~~~ip~~l~~l~~ 679 (801)
+|+.|+|++|.+++.+|..+..++.
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8888888888888888887776544
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=8.5e-19 Score=196.86 Aligned_cols=182 Identities=26% Similarity=0.353 Sum_probs=98.2
Q ss_pred CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG 519 (801)
Q Consensus 440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 519 (801)
+|+.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 34333 245666666666665 344 234566666666666654 444 333 56666666
Q ss_pred CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830 520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599 (801)
Q Consensus 520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~ 599 (801)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|+|++|++++ +|. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~L~~-lp~-l---------------- 178 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-------LPTSLEVLSVRNNQLTF-LPE-L---------------- 178 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC-C----------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-------cCCCcCEEECCCCCCCC-cch-h----------------
Confidence 666655 332 45566666666666554 221 24556666666666654 442 1
Q ss_pred ccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccC-------ceEeCcCccccccCCc
Q 044830 600 LDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSL-------KLLNFSHNILRGEIPV 672 (801)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~ip~ 672 (801)
.+.|+.|||++|+|+ .+|. +.. +| +.|+|++|.|+ .+|.
T Consensus 179 -----------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 179 -----------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp -----------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred -----------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 023456666666665 4444 443 45 66666666665 3555
Q ss_pred cccCCCCCCeEeCcCCcceecCCC
Q 044830 673 ELTSLTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 673 ~l~~l~~L~~L~ls~N~l~g~iP~ 696 (801)
.+..+++|+.|+|++|+++|.+|.
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCHH
Confidence 555566666666666666665553
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=167.31 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred CCEEECcCCCCcccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830 441 IEYLNLSNNSLSGMIP-QCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG 519 (801)
Q Consensus 441 L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 519 (801)
+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555554422 334555555555555555555444455555555555555555555555555556666666666
Q ss_pred CCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830 520 NNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF 584 (801)
Q Consensus 520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 584 (801)
+|++.+..|..+..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.+..+...+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~c~c~l~~l 174 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF----DTLHSLSTLNLLANPFNCNCYLAWL 174 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT----TTCTTCCEEECCSCCEECSGGGHHH
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh----cCCCCCCEEEecCcCCcCCCchHHH
Confidence 666655555556666666666666666655544433 5667777777777777766554433
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=2.4e-18 Score=183.83 Aligned_cols=233 Identities=18% Similarity=0.199 Sum_probs=179.1
Q ss_pred cEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCccE-EECC
Q 044830 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIP-QIFSKCYDLVA-LNLN 495 (801)
Q Consensus 418 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~ 495 (801)
++++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57889999998 567665 3689999999999997777789999999999999999876655 57889988775 6677
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC-cCcccCCCCCCCCCCCC-CCCcEEEccCC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN-SFHGPIYNNVPSIKRPF-PELRIIDISRN 573 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~l-~~L~~LdLs~N 573 (801)
.|++++..|..|.++++|++|++++|++....+..+....++..|++.++ ++....+..+ ..+ ..++.|+|++|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f----~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF----VGLSFESVILWLNKN 164 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch----hhcchhhhhhccccc
Confidence 79999888899999999999999999999888877778888999999764 5554333333 333 46899999999
Q ss_pred cCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccC-Ceeeeeccccccc
Q 044830 574 GFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSN-NRFEGMIPKEVGK 652 (801)
Q Consensus 574 ~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~-N~l~~~~p~~l~~ 652 (801)
+++. +|...|. ...|+.|++++ |.++...++.|+.
T Consensus 165 ~i~~-i~~~~f~-------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~ 200 (350)
T 4ay9_X 165 GIQE-IHNSAFN-------------------------------------------GTQLDELNLSDNNNLEELPNDVFHG 200 (350)
T ss_dssp CCCE-ECTTSST-------------------------------------------TEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred cccC-CChhhcc-------------------------------------------ccchhHHhhccCCcccCCCHHHhcc
Confidence 9984 4433221 24578999985 6777555567899
Q ss_pred cccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceecCCCCCCCCCcC
Q 044830 653 LSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGPIPQGKQFDSFQ 704 (801)
Q Consensus 653 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 704 (801)
+++|+.|||++|+|+...+.. +..|+.|.+.+++--..+|.-..+..+.
T Consensus 201 l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 201 ASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred CcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChh
Confidence 999999999999999554444 4556666666665556788644444443
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.1e-17 Score=165.75 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=77.9
Q ss_pred eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCccc
Q 044830 397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFR 476 (801)
Q Consensus 397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 476 (801)
+.++++++.++.+|....++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|.++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 44555555555555444445555555555555444444444555555555555555444444444555555555555444
Q ss_pred ccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCC
Q 044830 477 GSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVP 556 (801)
Q Consensus 477 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 556 (801)
...+.. |.++++|++|++++|++.+..+..+..+++|++|+|++|++++..+..+
T Consensus 94 ~l~~~~------------------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~- 148 (220)
T 2v9t_B 94 ELPKSL------------------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF- 148 (220)
T ss_dssp CCCTTT------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-
T ss_pred ccCHhH------------------------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH-
Confidence 333333 4444555555555555555444555555555555555555544333222
Q ss_pred CCCCCCCCCcEEEccCCcCCcc
Q 044830 557 SIKRPFPELRIIDISRNGFTGL 578 (801)
Q Consensus 557 ~~~~~l~~L~~LdLs~N~l~~~ 578 (801)
..+++|+.|+|++|++...
T Consensus 149 ---~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 149 ---SPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp ---TTCTTCCEEECCSSCEECS
T ss_pred ---hCCCCCCEEEeCCCCcCCC
Confidence 4555666666666666543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.2e-17 Score=163.54 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=145.5
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCc-cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFP-SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 473 (801)
.-+.+++++|.++.+|......+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus 12 ~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 55689999999999988778889999999999997754 45889999999999999999888889999999999999999
Q ss_pred cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCccc
Q 044830 474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGP 550 (801)
Q Consensus 474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 550 (801)
.+++..+..|..+++|++|+|++|++++..|..|.++++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99988888899999999999999999999899999999999999999999999999999999999999999998754
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.9e-17 Score=163.78 Aligned_cols=150 Identities=22% Similarity=0.258 Sum_probs=84.3
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 474 (801)
..+.++++++.+..+|....++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|+|++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 45556666666666665555666666666666666555566666666666666666654444555556666666666666
Q ss_pred ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC
Q 044830 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545 (801)
Q Consensus 475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 545 (801)
+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 65544445555555555555555555 44555555555555555555554444333333333333333333
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.4e-17 Score=162.14 Aligned_cols=150 Identities=19% Similarity=0.277 Sum_probs=124.0
Q ss_pred CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521 (801)
Q Consensus 442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (801)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777888777 4454443 57888889988888777778888999999999999998888889999999999999999
Q ss_pred cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCc
Q 044830 522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDID 599 (801)
Q Consensus 522 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~ 599 (801)
++.+..+..+..+++|++|+|++|++.+..+..+ ..+++|+.|+|++|++++..+ ..+..++.|..++...+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAF----QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc----CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCC
Confidence 9998888888999999999999999998766655 889999999999999996555 456777777666555543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=7.1e-18 Score=180.90 Aligned_cols=180 Identities=22% Similarity=0.219 Sum_probs=152.0
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccc-cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSIC-NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 473 (801)
.-+.++++++.++.+|....+.++.|++++|++++..+..+. .+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456788889989888877778899999999999987777777 8999999999999999888888999999999999999
Q ss_pred cccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhc---cCCCCCCEEEccCCcCccc
Q 044830 474 QFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWT---ATLPRLQVLVLRSNSFHGP 550 (801)
Q Consensus 474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~ 550 (801)
++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++.+..+..+ ..+++|+.|+|++|++.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9998878889999999999999999998888899999999999999999988776666 5689999999999998854
Q ss_pred CCCCCCCCCCCCCC--CcEEEccCCcCCcc
Q 044830 551 IYNNVPSIKRPFPE--LRIIDISRNGFTGL 578 (801)
Q Consensus 551 ~~~~~~~~~~~l~~--L~~LdLs~N~l~~~ 578 (801)
.+..+ ..++. ++.|+|++|++...
T Consensus 179 ~~~~~----~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 179 PLTDL----QKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CHHHH----HHSCHHHHTTEECCSSCEECC
T ss_pred CHHHh----hhccHhhcceEEecCCCccCC
Confidence 32222 44555 47899999988754
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=2.1e-17 Score=171.34 Aligned_cols=190 Identities=21% Similarity=0.318 Sum_probs=109.8
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
++..+.+..+.+.+.. .+..+++|+.|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 3344455555555332 234566777777777777643 3 36666777777777777765433 6666666666666
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|.+++ + ..+..+++|++|++++|++.+. ..+.. +++|+.|++++|++
T Consensus 99 ~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~----------------------------l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 99 ENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVH----------------------------LPQLESLYLGNNKI 146 (291)
T ss_dssp SSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGG----------------------------CTTCCEEECCSSCC
T ss_pred CCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcC----------------------------CCCCCEEEccCCcC
Confidence 666654 2 2355666666666666665543 22334 45555555555555
Q ss_pred CccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecccccccccc
Q 044830 576 TGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSS 655 (801)
Q Consensus 576 ~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 655 (801)
++. + .+. .++.|+.|++++|++++..| +..+++
T Consensus 147 ~~~-~--~l~------------------------------------------~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 147 TDI-T--VLS------------------------------------------RLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp CCC-G--GGG------------------------------------------GCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred Ccc-h--hhc------------------------------------------cCCCCCEEEccCCccccchh--hcCCCc
Confidence 432 1 011 13445666666666665544 666667
Q ss_pred CceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830 656 LKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 656 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 692 (801)
|+.|+|++|.+++. | .+..+++|+.|++++|+++.
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777777766643 3 36667777777777776654
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.6e-17 Score=176.51 Aligned_cols=166 Identities=27% Similarity=0.266 Sum_probs=131.6
Q ss_pred ccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 417 IRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLA-NFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
-+.++++++.++ .+|..+. +.++.|+|++|.+++..+..+. ++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368899999888 4665543 4588999999999988777787 88999999999999998888889999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|++++..+..|.++++|++|+|++|++.+..+..+..+++|+.|+|++|++.+..+..+ .....+++|+.|||++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-KDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT-C----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh-cCcccCCcCCEEECCCCCC
Confidence 999987777788899999999999999988888889999999999999998886332211 1114678899999999988
Q ss_pred CccCcHHHHhhh
Q 044830 576 TGLLPARYFQSL 587 (801)
Q Consensus 576 ~~~~p~~~~~~l 587 (801)
++ +|...+..+
T Consensus 176 ~~-l~~~~~~~l 186 (361)
T 2xot_A 176 KK-LPLTDLQKL 186 (361)
T ss_dssp CC-CCHHHHHHS
T ss_pred Cc-cCHHHhhhc
Confidence 84 454444443
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=6.4e-17 Score=167.63 Aligned_cols=147 Identities=25% Similarity=0.351 Sum_probs=115.7
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 67899999999988854 3 48889999999999999986554 8899999999999999985 33 488999999999
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N 573 (801)
+++|.+++. ..+..+++|+.|++++|++.+. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSS
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCC
Confidence 999999864 5688899999999999999775 456677777777777777665432 245566666666666
Q ss_pred cCC
Q 044830 574 GFT 576 (801)
Q Consensus 574 ~l~ 576 (801)
+++
T Consensus 189 ~i~ 191 (291)
T 1h6t_A 189 HIS 191 (291)
T ss_dssp CCC
T ss_pred cCC
Confidence 555
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.4e-17 Score=189.23 Aligned_cols=147 Identities=24% Similarity=0.358 Sum_probs=79.1
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 45555666666655532 2 35555666666666666554433 5555566666666665553 22 455555566666
Q ss_pred CCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830 494 LNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573 (801)
Q Consensus 494 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N 573 (801)
|++|.+.+. ..+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++.+..+ + ..+++|+.|+|++|
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l----~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L----AGLTKLQNLYLSKN 185 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G----TTCTTCCEEECCSS
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h----ccCCCCCEEECcCC
Confidence 666655532 3355555555555555555544 345555555555555555554333 2 44555555555555
Q ss_pred cCC
Q 044830 574 GFT 576 (801)
Q Consensus 574 ~l~ 576 (801)
+++
T Consensus 186 ~i~ 188 (605)
T 1m9s_A 186 HIS 188 (605)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=7.8e-17 Score=183.12 Aligned_cols=190 Identities=20% Similarity=0.286 Sum_probs=143.6
Q ss_pred CccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCCCE
Q 044830 365 NLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEY 443 (801)
Q Consensus 365 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 443 (801)
.+..+.+..+.+.+..+.. .+. .|+.|++++|.+..++. ..+++|+.|+|++|.+++..+ +..+++|+.
T Consensus 22 ~l~~l~l~~~~i~~~~~~~---~L~-----~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQN---ELN-----SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHTTCSCTTSEECHH---HHT-----TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHhccCCCcccccchh---cCC-----CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 4555666666665433211 111 67788888888877753 337888888888888886544 788888888
Q ss_pred EECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcC
Q 044830 444 LNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKI 523 (801)
Q Consensus 444 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 523 (801)
|+|++|.+++ ++ .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++
T Consensus 92 L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 92 LFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp EECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred EECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 9998888875 33 578888888889888888753 4577888888899988888865 5788888888899988888
Q ss_pred CCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCcc
Q 044830 524 NDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGL 578 (801)
Q Consensus 524 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 578 (801)
.+..| +..+++|+.|+|++|++.+. + .+..+++|+.|+|++|++++.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-----~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL-R-----ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-----GGTTCTTCSEEECCSEEEECC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC-h-----HHccCCCCCEEEccCCcCcCC
Confidence 87766 78888888899988888763 1 236788888888888888753
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.1e-16 Score=157.56 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=139.5
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECC
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLN 495 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (801)
+.+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++....+..|..+++|++|+|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4678999999988 5666544 789999999999999889999999999999999999987777788999999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 496 DNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|++++..+..|..+++|++|++++|++. .+|..+..+++|++|+|++|++.+..+..+ ..+++|+.|++++|++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF----DRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECTTSCB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH----hCCCCCCEEEeeCCCc
Confidence 99999887778899999999999999998 567888999999999999999987655434 7899999999999999
Q ss_pred CccCc
Q 044830 576 TGLLP 580 (801)
Q Consensus 576 ~~~~p 580 (801)
.+..+
T Consensus 172 ~c~c~ 176 (229)
T 3e6j_A 172 DCECR 176 (229)
T ss_dssp CTTBG
T ss_pred cCCcc
Confidence 87765
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.2e-16 Score=155.35 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=125.8
Q ss_pred ccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEE
Q 044830 413 LSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVAL 492 (801)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 492 (801)
.+++|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4678899999999988 455 68889999999999997763 3468889999999999999988788889999999999
Q ss_pred ECCCCcCCCCCCccccCCCCCcEEeCCCCc-CCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEcc
Q 044830 493 NLNDNELEGKLPPSLANCGDLEVLDVGNNK-INDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDIS 571 (801)
Q Consensus 493 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs 571 (801)
++++|.+++..|..+..+++|++|++++|+ +.. ++ .+..+++|++|++++|++.+.. .+..+++|+.|+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAF 189 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEEC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEee
Confidence 999999988788889999999999999998 544 44 5888999999999999987632 23778999999999
Q ss_pred CCcCCc
Q 044830 572 RNGFTG 577 (801)
Q Consensus 572 ~N~l~~ 577 (801)
+|++.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 998764
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=3.5e-17 Score=190.94 Aligned_cols=195 Identities=21% Similarity=0.206 Sum_probs=116.5
Q ss_pred ECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830 445 NLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIN 524 (801)
Q Consensus 445 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 524 (801)
+++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34444444 55777888888999999999887 56666668889999999999988 77888889999999999999988
Q ss_pred CCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccc
Q 044830 525 DAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMN 604 (801)
Q Consensus 525 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~ 604 (801)
.+|..+..+++|++|+|++|.+. .+|.. +..+++|+.|+|++|++++.+|..+ ..+..
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~--------------- 341 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWE----FGNLCNLQFLGVEGNPLEKQFLKIL-TEKSV--------------- 341 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSS----TTSCTTCCCEECTTSCCCSHHHHHH-HHHHH---------------
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChh----hhcCCCccEEeCCCCccCCCChHHH-hhcch---------------
Confidence 56888889999999999999886 34443 4889999999999999998888653 22211
Q ss_pred cCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccccccCceEeCcCc--------cccccCCccccC
Q 044830 605 SAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGKLSSLKLLNFSHN--------ILRGEIPVELTS 676 (801)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~ 676 (801)
....++|++|.+++.+|.. |+.|++++| .+.+.++..+..
T Consensus 342 --------------------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 342 --------------------------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp --------------------------HHHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred --------------------------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence 1123678999999888864 556777777 455556666777
Q ss_pred CCCCCeEeCcCCcceecCCC
Q 044830 677 LTALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 677 l~~L~~L~ls~N~l~g~iP~ 696 (801)
+..+....+++|-+.+....
T Consensus 390 l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp ------------CCCGGGCC
T ss_pred ccccceeeeeccccccccCc
Confidence 88888888999988765543
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.2e-19 Score=205.06 Aligned_cols=209 Identities=17% Similarity=0.107 Sum_probs=129.9
Q ss_pred cCCCCCCEEeCCCCCCccccccCCcCCCCCCEEeCCCCcCCC--------ccccCchhHhhcCCCCCCEEe-CCCccCCC
Q 044830 88 GQFTKLTHLNLSFSYFSGIVPSQISRLSKLVALDLSSDIPRT--------KFEQHTFNNLAKNLTELRYLL-LDNVQMFS 158 (801)
Q Consensus 88 ~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~--------~~~~~~~~~~l~~l~~L~~L~-L~~~~~~~ 158 (801)
..+++|+.|+|++|.++ .+|..+++|++|+.|++++|.... ....+..|..+..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45667777777777665 556667777777777765541000 001133445555555555555 333321
Q ss_pred CCchhhhccCCCCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccc
Q 044830 159 VVPSSLLNLSSASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTI 238 (801)
Q Consensus 159 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 238 (801)
.+|..+.+++|.+....+ ..|+.|++++|.+.. +|.+..+++|+.|+|++|.++ .+|..+
T Consensus 423 -----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 423 -----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred -----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC--CcCccccccCcEeecCccccc-ccchhh
Confidence 122222233333332111 236667777663322 455336677777777777777 677788
Q ss_pred cCCCCCCEEEcccccCcccCcccccCCCCCCEEEcCCCCCcccc-CccccCCCCCcEeeccCeeeeeeCCcc---CcCCC
Q 044830 239 GNLRDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEF-PDVFGNLSKLTRISLAHLNFTGQLPLS---AFNLT 314 (801)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~ 314 (801)
+.+++|+.|+|++|.+++ +| .++.+++|++|+|++|.+++.. |..++.+++|+.|++++|.+++..|.. +..++
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 888888888888888876 56 7888888888888888888776 788888888888888888887654422 12377
Q ss_pred CCCEEEc
Q 044830 315 QLSLLEL 321 (801)
Q Consensus 315 ~L~~L~l 321 (801)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8888764
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.6e-16 Score=160.34 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=86.5
Q ss_pred cCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCC
Q 044830 484 SKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFP 563 (801)
Q Consensus 484 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~ 563 (801)
..+++|++|++++|.++. ++ .+..+++|++|++++|++.+..+ +..+++|++|++++|++.+..+ + .. +
T Consensus 38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~----~~-~ 106 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--I----PS-A 106 (263)
T ss_dssp HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--C----CC-S
T ss_pred hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--c----cc-C
Confidence 334444444444444432 22 34444555555555555544333 4455555555555555543211 1 11 6
Q ss_pred CCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeee
Q 044830 564 ELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFE 643 (801)
Q Consensus 564 ~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 643 (801)
+|+.|++++|++++. |. +. .++.|+.|||++|+++
T Consensus 107 ~L~~L~L~~N~l~~~-~~--l~------------------------------------------~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT-DS--LI------------------------------------------HLKNLEILSIRNNKLK 141 (263)
T ss_dssp SCCEEECCSSCCSBS-GG--GT------------------------------------------TCTTCCEEECTTSCCC
T ss_pred cccEEEccCCccCCC-hh--hc------------------------------------------CcccccEEECCCCcCC
Confidence 677777777776642 21 11 1345677777777777
Q ss_pred eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCcceec
Q 044830 644 GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVGP 693 (801)
Q Consensus 644 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 693 (801)
+. | .++.+++|+.|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 142 ~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 142 SI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 54 3 577778888888888888765 5677788888888888887765
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-15 Score=148.22 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=120.0
Q ss_pred eeeEEEecCCCCCCCCC-CccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCC
Q 044830 395 ELRHLDVQSNLLQRLPF-ILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKN 473 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 473 (801)
.++.|++++|.+..++. ..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 34444455544444331 236789999999997763 347888999999999999999878888999999999999999
Q ss_pred cccccCCccccCCCCccEEECCCCc-CCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcc
Q 044830 474 QFRGSIPQIFSKCYDLVALNLNDNE-LEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHG 549 (801)
Q Consensus 474 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 549 (801)
.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++.+.. .+..+++|+.|++++|++.+
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 9998888889999999999999998 55 555 6889999999999999998754 68889999999999998764
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.2e-18 Score=196.77 Aligned_cols=220 Identities=20% Similarity=0.159 Sum_probs=113.4
Q ss_pred cCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCc
Q 044830 287 GNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENL 366 (801)
Q Consensus 287 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L 366 (801)
..+++|+.|++++|.+. .+|..++++++|+.|++++|......+.. +..+...+.+|..+.. +++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~---l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQY---FSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHH---HHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHH---HHhc
Confidence 44566667777777665 56666666666666666554321111100 0011233445555554 4556
Q ss_pred cEEE-ccCCCccccccccCCCCcccccceeeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEE
Q 044830 367 VELD-LSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLN 445 (801)
Q Consensus 367 ~~L~-Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 445 (801)
+.|+ ++.|.+. .|..+.+++|.++.. +. ..|+.|+
T Consensus 412 ~~L~~l~~n~~~--------------------------------------~L~~l~l~~n~i~~l-~~-----~~L~~L~ 447 (567)
T 1dce_A 412 KAVDPMRAAYLD--------------------------------------DLRSKFLLENSVLKM-EY-----ADVRVLH 447 (567)
T ss_dssp HHHCGGGHHHHH--------------------------------------HHHHHHHHHHHHHHH-HH-----TTCSEEE
T ss_pred ccCcchhhcccc--------------------------------------hhhhhhhhccccccc-Cc-----cCceEEE
Confidence 6555 4444322 233333333333321 11 1355555
Q ss_pred CcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830 446 LSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND 525 (801)
Q Consensus 446 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 525 (801)
+++|.+++ +|. ++.+++|+.|++++|.++ .+|..|+.+++|+.|+|++|.+++ +| .+.++++|+.|++++|++++
T Consensus 448 Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 448 LAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp CTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS
T ss_pred ecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC
Confidence 55555553 343 555555666666666555 455555556666666666666654 34 55566666666666666655
Q ss_pred Cc-chhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEc
Q 044830 526 AF-PYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDI 570 (801)
Q Consensus 526 ~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdL 570 (801)
.. |..+..+++|+.|+|++|++++..+. .......+++|+.||+
T Consensus 523 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGI-QERLAEMLPSVSSILT 567 (567)
T ss_dssp SSTTGGGGGCTTCCEEECTTSGGGGSSSC-TTHHHHHCTTCSEEEC
T ss_pred CCCcHHHhcCCCCCEEEecCCcCCCCccH-HHHHHHHCcccCccCC
Confidence 54 55566666666666666666554331 1111233566666654
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=8.1e-16 Score=156.70 Aligned_cols=166 Identities=21% Similarity=0.297 Sum_probs=131.4
Q ss_pred eeEEEecCCCCCCCC-CCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830 396 LRHLDVQSNLLQRLP-FILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474 (801)
Q Consensus 396 L~~L~l~~n~l~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 474 (801)
+..++++.+.+++++ ...+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|+
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 333444455554444 2236789999999998884 44 68889999999999999986554 8899999999999999
Q ss_pred ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCC
Q 044830 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNN 554 (801)
Q Consensus 475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 554 (801)
+++. |.. .. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++.+. .
T Consensus 97 l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~- 166 (263)
T 1xeu_A 97 LKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G- 166 (263)
T ss_dssp CSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T-
T ss_pred cCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H-
Confidence 9863 432 33 8999999999999864 3688999999999999999876 3 688899999999999999876 2
Q ss_pred CCCCCCCCCCCcEEEccCCcCCcc
Q 044830 555 VPSIKRPFPELRIIDISRNGFTGL 578 (801)
Q Consensus 555 ~~~~~~~l~~L~~LdLs~N~l~~~ 578 (801)
.+..+++|+.|++++|++++.
T Consensus 167 ---~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 ---GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---TSTTCCCCCEEEEEEEEEECC
T ss_pred ---HhccCCCCCEEeCCCCcccCC
Confidence 347889999999999998855
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=5.8e-17 Score=189.06 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=97.6
Q ss_pred EEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcC
Q 044830 420 LSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNEL 499 (801)
Q Consensus 420 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 499 (801)
+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 344444444 44666777777888888888777 55555667777888888888777 6777777778888888888887
Q ss_pred CCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCC-CCCcEEEccCCcCCcc
Q 044830 500 EGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPF-PELRIIDISRNGFTGL 578 (801)
Q Consensus 500 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~ 578 (801)
+ .+|..|.++++|++|+|++|.+. .+|..++.+++|++|+|++|++++.+|..+ ..+ ..+..++|++|.++|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL----TEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH----HHHHHHHHHHHHHHCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH----hhcchhhhHHhhccCcccCc
Confidence 7 66777777788888888888775 456667777888888888887776655433 111 1122367777887777
Q ss_pred CcH
Q 044830 579 LPA 581 (801)
Q Consensus 579 ~p~ 581 (801)
+|.
T Consensus 357 ~p~ 359 (727)
T 4b8c_D 357 LPH 359 (727)
T ss_dssp CCC
T ss_pred Ccc
Confidence 774
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=5.6e-15 Score=142.77 Aligned_cols=136 Identities=21% Similarity=0.308 Sum_probs=83.0
Q ss_pred CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCc-cccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC
Q 044830 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQ-IFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN 520 (801)
Q Consensus 442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 520 (801)
+.+++++|.++ .+|..+. .+|++|++++|.+++..+. .|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555554 3333322 2555566666655544432 355566666666666666655566666666666666666
Q ss_pred CcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHH
Q 044830 521 NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYF 584 (801)
Q Consensus 521 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 584 (801)
|++.+..+..+..+++|++|+|++|++++..+..+ ..+++|++|+|++|++++..+...+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----TTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----hcCCCCCEEEeCCCCccCcCcchHH
Confidence 66666666666666666777777776666555444 6677788888888888877665444
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.6e-15 Score=142.24 Aligned_cols=129 Identities=23% Similarity=0.328 Sum_probs=71.6
Q ss_pred eEEEecCCCCCCCCCCccccccEEEecCCCCCCCCcc-ccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830 397 RHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPS-SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475 (801)
Q Consensus 397 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l 475 (801)
+.++++++.++.+|.....++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4555666655555544444566666666665544332 255555566666666655555555555555555555555555
Q ss_pred cccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830 476 RGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND 525 (801)
Q Consensus 476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 525 (801)
++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++.+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55555555555555555555555555555555555555555555555543
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=4e-15 Score=157.35 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=82.8
Q ss_pred cCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCcc-EEECCCCcCCCCCCccccCCCCCcE
Q 044830 437 NLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV-ALNLNDNELEGKLPPSLANCGDLEV 515 (801)
Q Consensus 437 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~ 515 (801)
.+++|+.+++++|+++...+.+|.++.+|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++...+..|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3678888888888888777778888888888888887 7666677888888888 888887 666666678888888888
Q ss_pred EeCCCCcCCCCcchhccCCCCCCEEEc
Q 044830 516 LDVGNNKINDAFPYWTATLPRLQVLVL 542 (801)
Q Consensus 516 L~Ls~n~i~~~~~~~~~~l~~L~~L~L 542 (801)
++++.|++..+.+.+|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888888877778888888887763
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.1e-15 Score=161.66 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=93.1
Q ss_pred cccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCC-EEeCCCCcccccCCccccCCCCccEE
Q 044830 414 SSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLS-LLDLRKNQFRGSIPQIFSKCYDLVAL 492 (801)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L 492 (801)
+++|+.+++++|+++...+.+|.++++|+.+++.+| ++...+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 578999999999998776778999999999999998 7777888999999999 999999 7887778999999999999
Q ss_pred ECCCCcCCCCCCccccCCCCCcEEeC
Q 044830 493 NLNDNELEGKLPPSLANCGDLEVLDV 518 (801)
Q Consensus 493 ~L~~n~l~~~~~~~l~~l~~L~~L~L 518 (801)
++++|+++...+..|.+|++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999888889999999999874
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=6.5e-15 Score=139.14 Aligned_cols=131 Identities=24% Similarity=0.276 Sum_probs=66.7
Q ss_pred ccccEEEecCCCCC-CCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 415 SRIRFLSVSDNKLT-GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 415 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555555 44455555555555555555555543 3455555555555555555544444444455555555
Q ss_pred CCCCcCCCCC-CccccCCCCCcEEeCCCCcCCCCcc---hhccCCCCCCEEEccCCcC
Q 044830 494 LNDNELEGKL-PPSLANCGDLEVLDVGNNKINDAFP---YWTATLPRLQVLVLRSNSF 547 (801)
Q Consensus 494 L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~l 547 (801)
+++|.+++.. +..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555554321 1344555555555555555544433 2444444444444444443
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.9e-14 Score=137.64 Aligned_cols=108 Identities=26% Similarity=0.350 Sum_probs=58.0
Q ss_pred CCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830 440 TIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG 519 (801)
Q Consensus 440 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 519 (801)
.|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4445555555544 333444555555555555555554444445555555555555555554444555555555555555
Q ss_pred CCcCCCCcchhccCCCCCCEEEccCCcCc
Q 044830 520 NNKINDAFPYWTATLPRLQVLVLRSNSFH 548 (801)
Q Consensus 520 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 548 (801)
+|++....+..+..+++|+.|++++|++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55555555555555666666666666554
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=7.2e-15 Score=138.81 Aligned_cols=139 Identities=22% Similarity=0.179 Sum_probs=119.8
Q ss_pred CCCCCEEECcCCCCc-ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEE
Q 044830 438 LSTIEYLNLSNNSLS-GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVL 516 (801)
Q Consensus 438 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 516 (801)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999998 67888889999999999999999866 788999999999999999998888888889999999
Q ss_pred eCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830 517 DVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP 580 (801)
Q Consensus 517 ~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 580 (801)
++++|++.+... ..+..+++|+.|++++|++++..+. ....+..+++|++|++++|.+. .+|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhCccCcEecCCCCChh-hcc
Confidence 999999988643 7889999999999999999865430 0013478999999999999986 344
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.8e-15 Score=136.96 Aligned_cols=126 Identities=23% Similarity=0.354 Sum_probs=68.3
Q ss_pred ccccEEEecCCCCC-CCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEE
Q 044830 415 SRIRFLSVSDNKLT-GEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALN 493 (801)
Q Consensus 415 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 493 (801)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 45555555566666666666665543 4455555566666666655554555555555555555
Q ss_pred CCCCcCCCC-CCccccCCCCCcEEeCCCCcCCCCcc---hhccCCCCCCEEEc
Q 044830 494 LNDNELEGK-LPPSLANCGDLEVLDVGNNKINDAFP---YWTATLPRLQVLVL 542 (801)
Q Consensus 494 L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L 542 (801)
+++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555542 22445555555555555555554443 34444445544444
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.5e-14 Score=134.60 Aligned_cols=131 Identities=20% Similarity=0.229 Sum_probs=66.8
Q ss_pred eeeEEEecCCCCCCCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCc
Q 044830 395 ELRHLDVQSNLLQRLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQ 474 (801)
Q Consensus 395 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 474 (801)
..+.++++++.++.++....++++.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34455555555555554444555555555555554444444555555555555555554444444555555555555555
Q ss_pred ccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830 475 FRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKIND 525 (801)
Q Consensus 475 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 525 (801)
+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 554444444445555555555555543333334444444444444444443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=5e-14 Score=135.99 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=78.9
Q ss_pred CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521 (801)
Q Consensus 442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (801)
+.+++++|.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35566666655 3343322 45666666666665 45566666666666666666666655556666666666666666
Q ss_pred cCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830 522 KINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP 580 (801)
Q Consensus 522 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 580 (801)
++.+..+..+..+++|++|+|++|+++...+..+ ..+++|+.|++++|++...-.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF----NDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT----TTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh----hcCccccEEEeCCCCeecCCc
Confidence 6666666666666666666666666664333222 556666666666666654433
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=9.3e-15 Score=134.99 Aligned_cols=132 Identities=23% Similarity=0.244 Sum_probs=104.3
Q ss_pred CCCCCEEECcCCCCc-ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEE
Q 044830 438 LSTIEYLNLSNNSLS-GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVL 516 (801)
Q Consensus 438 l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 516 (801)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467899999999998 67888888899999999999998865 678888999999999999987788878788899999
Q ss_pred eCCCCcCCCC-cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccC
Q 044830 517 DVGNNKINDA-FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISR 572 (801)
Q Consensus 517 ~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~ 572 (801)
++++|++.+. .+..+..+++|++|++++|++++..+. ....+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCCCcccccCCC
Confidence 9999998774 346778888888888888888764330 001236677888887763
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=7.4e-14 Score=133.07 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=88.5
Q ss_pred CCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCC
Q 044830 441 IEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGN 520 (801)
Q Consensus 441 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 520 (801)
.+.++++++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.++++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3556666666653 33222 24666666666666655555566667777777777777655555566777777777777
Q ss_pred CcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCc
Q 044830 521 NKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLP 580 (801)
Q Consensus 521 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 580 (801)
|++++..+..+..+++|++|++++|++++..+.. +..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI----FDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHH----hcCCcccCEEEecCCCeeccCc
Confidence 7777666666777777777777777776543322 2667888888888888887766
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=4.8e-12 Score=137.23 Aligned_cols=323 Identities=12% Similarity=0.114 Sum_probs=158.2
Q ss_pred CCccEEEccCCcCccCCCccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEc
Q 044830 170 ASLISLSLGNCFLRGEFPIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDL 249 (801)
Q Consensus 170 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 249 (801)
.+|+++.+..+ ++..-..+|.++++|+.+++..+ +.......+..+..|+.+.+..+ +.......|..+..++....
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 44444444422 33233344555555555555444 33322223334445544444322 22122333444433222222
Q ss_pred ccccCcccCcccccCCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEccccccccc
Q 044830 250 YVCYFDGQVPASLSNLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQ 329 (801)
Q Consensus 250 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~ 329 (801)
... ......+|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +.......+.++..|+.+.+..+... .
T Consensus 148 ~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i 222 (394)
T 4fs7_A 148 EGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-L 222 (394)
T ss_dssp TTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-E
T ss_pred ccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-e
Confidence 211 11223456666666666665442 2244455666666666666554 33334445556666666665544322 1
Q ss_pred CCCCCCCCCCCEEEccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCCCCCCC
Q 044830 330 LPCHASCLPLSHLKLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSNLLQRL 409 (801)
Q Consensus 330 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 409 (801)
....+.+..|+.+.+.... + .+....+ ..+..++.+.+..+... +...
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f--~~~~~l~~~~~~~~~~~----------------------------i~~~ 270 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-T-ELGKSVF--YGCTDLESISIQNNKLR----------------------------IGGS 270 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-C-EECSSTT--TTCSSCCEEEECCTTCE----------------------------ECSC
T ss_pred ehhhcccCCCceEEECCCc-e-ecccccc--cccccceeEEcCCCcce----------------------------eecc
Confidence 1222244556666554321 1 1222111 12455555555444321 0111
Q ss_pred CCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCc
Q 044830 410 PFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDL 489 (801)
Q Consensus 410 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 489 (801)
.+..+..++.+......+. ...|..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++.+...+|.++.+|
T Consensus 271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 1222344444444433322 234556667777776554 44445566777777777777643 554556677777777
Q ss_pred cEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEE
Q 044830 490 VALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVL 540 (801)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 540 (801)
+.+++..+ ++..-..+|.+|.+|+.+++..+ + ..+...|.++++|+.+
T Consensus 346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~-~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-L-EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-G-GGGGGGBCTTCEEEEE
T ss_pred CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-C-EEhhheecCCCCCcEE
Confidence 77777665 55455567777777777777644 2 2224556666666653
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=4.5e-12 Score=136.74 Aligned_cols=126 Identities=12% Similarity=0.169 Sum_probs=68.9
Q ss_pred cccEEEecCCCCCCCCccccccCCCCCEEECcCCCCc-----ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCcc
Q 044830 416 RIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLS-----GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLV 490 (801)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 490 (801)
+|+.+.+. +.++..-..+|.++++|+.+++.+|.+. ...+.+|.+|++|+.+++.+ .+..+...+|.++++|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 34444442 2233333455666666666666665543 34445666666666666663 35545555666666666
Q ss_pred EEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCC-CCCEEEccCC
Q 044830 491 ALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLP-RLQVLVLRSN 545 (801)
Q Consensus 491 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N 545 (801)
.+.|..+ ++..-+..|.+| +|+.+++++|.+....+..|.+++ .++.|++..+
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 6666443 444445556666 666666666655554444444442 3444444443
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=1.7e-11 Score=132.12 Aligned_cols=90 Identities=10% Similarity=0.131 Sum_probs=71.0
Q ss_pred CccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCC
Q 044830 431 FPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANC 510 (801)
Q Consensus 431 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 510 (801)
.+.+|.++++|+.+++.+ .++.....+|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+++.+|.+....+..|.++
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 346678888889998884 477667778888999999999655 666667888888 89999999998876667778877
Q ss_pred C-CCcEEeCCCCcC
Q 044830 511 G-DLEVLDVGNNKI 523 (801)
Q Consensus 511 ~-~L~~L~Ls~n~i 523 (801)
+ .++.|++..+.+
T Consensus 369 ~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 369 PDDITVIRVPAESV 382 (401)
T ss_dssp CTTCCEEEECGGGH
T ss_pred CCCccEEEeCHHHH
Confidence 4 788888877654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3.7e-13 Score=127.99 Aligned_cols=137 Identities=20% Similarity=0.161 Sum_probs=71.8
Q ss_pred ccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcE
Q 044830 436 CNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEV 515 (801)
Q Consensus 436 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 515 (801)
.++++|++|++++|.++. +|......++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344555555555555552 233222222555555555555543 34555556666666666665443333455666666
Q ss_pred EeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830 516 LDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT 576 (801)
Q Consensus 516 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 576 (801)
|++++|++....+ ..+..+++|+.|++++|++... +......+..+++|+.||+++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666643221 2455666666666666666532 2110001356677777777777654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=3.7e-13 Score=128.01 Aligned_cols=131 Identities=19% Similarity=0.221 Sum_probs=110.5
Q ss_pred ccccccEEEecCCCCCCCCccccccC-CCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccE
Q 044830 413 LSSRIRFLSVSDNKLTGEFPSSICNL-STIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVA 491 (801)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 491 (801)
.+.+|+.|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 36789999999999984 454 4454 4999999999999975 57889999999999999999766666789999999
Q ss_pred EECCCCcCCCCCCc--cccCCCCCcEEeCCCCcCCCCcch---hccCCCCCCEEEccCCcCc
Q 044830 492 LNLNDNELEGKLPP--SLANCGDLEVLDVGNNKINDAFPY---WTATLPRLQVLVLRSNSFH 548 (801)
Q Consensus 492 L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~N~l~ 548 (801)
|++++|.++ .+|. .+..+++|+.|++++|++....+. .+..+++|+.|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999996 4565 788999999999999999765433 4889999999999999765
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=2.4e-11 Score=131.68 Aligned_cols=310 Identities=13% Similarity=0.078 Sum_probs=162.7
Q ss_pred CccCCCCCCCCEEeccCCCCCccCCCCCCCCCCCCEEEccCccCcccCcccccCCCCCCEEEcccccCcccCcccccCCC
Q 044830 187 PIDIFHFPFLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLSNLK 266 (801)
Q Consensus 187 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 266 (801)
..+|.++.+|+.+.+..+ +....-.++.++++|+.+++..+ ++..-...|..+.+|+.+.+..+ +......+|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 456677777888877655 54444444446677777776543 33233445666666666555433 2223334444443
Q ss_pred CCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEEEcc
Q 044830 267 QLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHLKLG 345 (801)
Q Consensus 267 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~ 345 (801)
.++...... .......+|.++++|+.+.+.++. .......|.++.+|+.+++..+ ++......+ .+..|+.+.+.
T Consensus 141 ~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 322222211 122233455566666666655432 2233344455555555555443 221111122 34444444333
Q ss_pred CCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCC--CCCCCCCCccccccEEEec
Q 044830 346 GNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN--LLQRLPFILSSRIRFLSVS 423 (801)
Q Consensus 346 ~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~L~~L~L~ 423 (801)
.+... +.+..+. .. .++.+.+... .+....+..+..++.+.+.
T Consensus 217 ~~~~~--i~~~~~~---~~------------------------------~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 217 NSLYY--LGDFALS---KT------------------------------GVKNIIIPDSFTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp TTCCE--ECTTTTT---TC------------------------------CCCEEEECTTCCEECSSTTTTCSSCCEEEEC
T ss_pred CCceE--eehhhcc---cC------------------------------CCceEEECCCceecccccccccccceeEEcC
Confidence 22111 1111111 12 3333333221 1122223345667777776
Q ss_pred CCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCC
Q 044830 424 DNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKL 503 (801)
Q Consensus 424 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 503 (801)
.+... .....|..+..++.+....+.+ ...+|.++.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++..-
T Consensus 262 ~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 262 NNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp CTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred CCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence 65433 3445566777777777665533 2345667777877777654 55455667777777888777643 55455
Q ss_pred CccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCC
Q 044830 504 PPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSN 545 (801)
Q Consensus 504 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 545 (801)
..+|.+|.+|+.+++..+ +..+...+|.++++|+.+.+..+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 567777777887777665 65666667777777777777654
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=3.9e-15 Score=144.83 Aligned_cols=155 Identities=23% Similarity=0.324 Sum_probs=116.0
Q ss_pred ccccEEEecCCCCCCCCcc------ccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCC
Q 044830 415 SRIRFLSVSDNKLTGEFPS------SICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYD 488 (801)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 488 (801)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3455556666666655554 78888999999999999886 56 7888889999999999888 56777777788
Q ss_pred ccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcc-hhccCCCCCCEEEccCCcCcccCCCC------CCCCCCC
Q 044830 489 LVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFP-YWTATLPRLQVLVLRSNSFHGPIYNN------VPSIKRP 561 (801)
Q Consensus 489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~~ 561 (801)
|++|++++|++++ +| .+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+.. ....+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 9999999999885 34 67788889999999998876543 56788888999999888887664432 0001256
Q ss_pred CCCCcEEEccCCcCC
Q 044830 562 FPELRIIDISRNGFT 576 (801)
Q Consensus 562 l~~L~~LdLs~N~l~ 576 (801)
+++|+.|| +|.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 77888877 56554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=7.4e-15 Score=142.82 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=72.5
Q ss_pred cccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCccCcHHHHh
Q 044830 506 SLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTGLLPARYFQ 585 (801)
Q Consensus 506 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 585 (801)
.+..+++|++|++++|++.+ +| .+..+++|+.|++++|++.. +| ..+..+++|+.|++++|++++ +| . +.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~----~~~~~~~~L~~L~L~~N~l~~-l~-~-~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IE----NLDAVADTLEELWISYNQIAS-LS-G-IE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CS----SHHHHHHHCSEEEEEEEECCC-HH-H-HH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-cc----chhhcCCcCCEEECcCCcCCc-CC-c-cc
Confidence 45555555555555555544 23 44555555555555555542 11 122344566666666666654 22 1 11
Q ss_pred hhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeecc-ccccccccCceEeCcCc
Q 044830 586 SLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIP-KEVGKLSSLKLLNFSHN 664 (801)
Q Consensus 586 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N 664 (801)
. ++.|+.|++++|++++..+ ..+..+++|+.|++++|
T Consensus 113 ~------------------------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 113 K------------------------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp H------------------------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred c------------------------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 1 2345667777777664332 45666777777777777
Q ss_pred cccccCCcc----------ccCCCCCCeEeCcCCcce
Q 044830 665 ILRGEIPVE----------LTSLTALSVLNLSFNQLV 691 (801)
Q Consensus 665 ~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 691 (801)
.+.+.+|.. +..+++|+.|| +|+++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 776665543 56666677665 44443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=7.1e-12 Score=118.14 Aligned_cols=106 Identities=27% Similarity=0.345 Sum_probs=62.9
Q ss_pred cEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCC
Q 044830 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497 (801)
Q Consensus 418 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 497 (801)
+.+++++|.++. +|..+ .+.|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 344555555542 33333 245666666666666555666666666666666666666555555666666666666666
Q ss_pred cCCCCCCccccCCCCCcEEeCCCCcCCCC
Q 044830 498 ELEGKLPPSLANCGDLEVLDVGNNKINDA 526 (801)
Q Consensus 498 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 526 (801)
++++..+..|..+++|++|+|++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 66655555566666677777777666543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=7.7e-12 Score=117.86 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=45.0
Q ss_pred CCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCc
Q 044830 487 YDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELR 566 (801)
Q Consensus 487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~ 566 (801)
++|++|+|++|++++..|..|.++++|++|++++|++.+..+..+..+++|++|+|++|++.+..+..+ ..+++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF----DNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh----cCCCCCC
Confidence 344444444444444444444444445555555555444444444455555555555555544332222 5566666
Q ss_pred EEEccCCcCCccCc
Q 044830 567 IIDISRNGFTGLLP 580 (801)
Q Consensus 567 ~LdLs~N~l~~~~p 580 (801)
.|+|++|+++...+
T Consensus 106 ~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 106 HIWLLNNPWDCACS 119 (170)
T ss_dssp EEECCSSCBCTTBG
T ss_pred EEEeCCCCCCCCch
Confidence 66666666665443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.4e-11 Score=116.47 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=34.2
Q ss_pred CEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCC
Q 044830 442 EYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNN 521 (801)
Q Consensus 442 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 521 (801)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 2332221 34444444444444444444444444444444444444333333344444444444444
Q ss_pred cCCC
Q 044830 522 KIND 525 (801)
Q Consensus 522 ~i~~ 525 (801)
++.+
T Consensus 92 ~l~~ 95 (174)
T 2r9u_A 92 HLKS 95 (174)
T ss_dssp CCCC
T ss_pred ccce
Confidence 4433
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.4e-11 Score=116.43 Aligned_cols=105 Identities=23% Similarity=0.320 Sum_probs=66.2
Q ss_pred cEEEecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCC
Q 044830 418 RFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDN 497 (801)
Q Consensus 418 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 497 (801)
+.+++++|.++ .+|..+. +.|++|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3444332 55666666666666666666666666777777777666555555666677777777777
Q ss_pred cCCCCCCccccCCCCCcEEeCCCCcCCC
Q 044830 498 ELEGKLPPSLANCGDLEVLDVGNNKIND 525 (801)
Q Consensus 498 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 525 (801)
++++..+..|..+++|++|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7765554556677777777777777654
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.23 E-value=2.2e-09 Score=116.12 Aligned_cols=133 Identities=10% Similarity=0.187 Sum_probs=83.5
Q ss_pred ccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCC
Q 044830 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511 (801)
Q Consensus 432 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 511 (801)
..+|.++..|+.+.+.++..+ ....+|.++..|+.+.+. +.++.+....|.++.+|+.+++..+ ++..-..+|.+|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345667777777777655433 455667777888888875 3455455667778888888888754 5445556788888
Q ss_pred CCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcC
Q 044830 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGF 575 (801)
Q Consensus 512 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l 575 (801)
+|+.+.+..+ ++.+...+|.++.+|+.+.+.++..... .+..+.+|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-------~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-------AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-------TCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-------hhhccCCCCEEEeCCCCE
Confidence 8888888644 6666677788888888888887754321 124566777777766543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.4e-13 Score=146.98 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=20.0
Q ss_pred cceEEEccCCeeeee----ccccccccccCceEeCcCcccccc
Q 044830 631 IFTTIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILRGE 669 (801)
Q Consensus 631 ~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 669 (801)
.|+.|||++|.|++. ++..+...++|+.|||++|.|+..
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 455555555555432 223333445566666666655543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=3.6e-13 Score=143.92 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=58.5
Q ss_pred CCCCEEeCCCCcccccCCccc-cCCCCccEEECCCCcCCCCCCccc-----cCCCCCcEEeCCCCcCCCC----cchhcc
Q 044830 463 DSLSLLDLRKNQFRGSIPQIF-SKCYDLVALNLNDNELEGKLPPSL-----ANCGDLEVLDVGNNKINDA----FPYWTA 532 (801)
Q Consensus 463 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~----~~~~~~ 532 (801)
++|++|+|++|.++......+ ..+++|++|+|++|.++......+ ...++|++|+|++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555555443221111 123355566666665543222222 2345666666666666442 233345
Q ss_pred CCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCCc
Q 044830 533 TLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFTG 577 (801)
Q Consensus 533 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 577 (801)
.+++|++|+|++|.+.+.....+...+...++|+.|||++|.+++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 566667777777666543221222222455678888888887764
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=2.3e-09 Score=116.00 Aligned_cols=326 Identities=12% Similarity=0.140 Sum_probs=160.7
Q ss_pred ccCCCCC-CCCEEeccCCCCCccCCCCCCCCCCCCEEEccCcc---CcccCcccccCCCCCCEEEcccccCcccCccccc
Q 044830 188 IDIFHFP-FLRQLTLSDNGLLTGNLPTSNWSSPLRILDLSITK---FSGKIPDTIGNLRDLKFLDLYVCYFDGQVPASLS 263 (801)
Q Consensus 188 ~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 263 (801)
.+|.+++ .|+.+.+-.+ +....-.++.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++......|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4555663 4777777665 555444555577777777776553 43333445666666666665543 3334445566
Q ss_pred CCCCCCEEEcCCCCCccccCccccCCCCCcEeeccCeeeeeeCCccCcCCCCCCEEEcccccccccCCCCC-CCCCCCEE
Q 044830 264 NLKQLTVLNLEDNQFSGEFPDVFGNLSKLTRISLAHLNFTGQLPLSAFNLTQLSLLELSRNQFVGQLPCHA-SCLPLSHL 342 (801)
Q Consensus 264 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L 342 (801)
.+.+|+.+.+..+ +.......|..+.+|+.+.+..+ +...-...| ...+|+.+.+..+-.. .....+ .+..++..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcccc-cccchhhhcccccee
Confidence 6666776666543 33344455666666666666543 222222223 2345666655443221 111122 44444444
Q ss_pred EccCCcCCcccchhhcCCCCCCCccEEEccCCCccccccccCCCCcccccceeeeEEEecCC--CCCCCCCCccccccEE
Q 044830 343 KLGGNFLDGRIPSWLFNLSTSENLVELDLSNNKLTGQIFQLDQWPVERISSVELRHLDVQSN--LLQRLPFILSSRIRFL 420 (801)
Q Consensus 343 ~L~~n~l~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~L~~L 420 (801)
........ .+...+................ ...+..+.+... .+....+..+..|+.+
T Consensus 211 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i 270 (394)
T 4gt6_A 211 TSDSESYP-AIDNVLYEKSANGDYALIRYPS-------------------QREDPAFKIPNGVARIETHAFDSCAYLASV 270 (394)
T ss_dssp EECCSSSC-BSSSCEEEECTTSCEEEEECCT-------------------TCCCSEEECCTTEEEECTTTTTTCSSCCEE
T ss_pred cccccccc-cccceeeccccccccccccccc-------------------ccccceEEcCCcceEcccceeeecccccEE
Confidence 44333222 1111111000000000000000 001122222111 1112223445667777
Q ss_pred EecCCCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCC
Q 044830 421 SVSDNKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELE 500 (801)
Q Consensus 421 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 500 (801)
.+.++... ....+|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ ++
T Consensus 271 ~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~ 346 (394)
T 4gt6_A 271 KMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT 346 (394)
T ss_dssp ECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC
T ss_pred ecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC
Confidence 76654332 334556677777777775 3454455566777777777777654 55455567777777777777544 55
Q ss_pred CCCCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCc
Q 044830 501 GKLPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNS 546 (801)
Q Consensus 501 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 546 (801)
..-..+|.+|++|+.+++.++... ...+..+.+|+.+.+..+.
T Consensus 347 ~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 347 KIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp BCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred EEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 444567777777777777766432 1345566667777665553
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=5.8e-10 Score=118.58 Aligned_cols=103 Identities=21% Similarity=0.217 Sum_probs=71.6
Q ss_pred EEEecCC-CCCCCCccccccCCCCCEEECcC-CCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCC
Q 044830 419 FLSVSDN-KLTGEFPSSICNLSTIEYLNLSN-NSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLND 496 (801)
Q Consensus 419 ~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 496 (801)
.++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 3566 77777777777775 777766666777777777777777777777777777777777777777
Q ss_pred CcCCCCCCccccCCCCCcEEeCCCCcCC
Q 044830 497 NELEGKLPPSLANCGDLEVLDVGNNKIN 524 (801)
Q Consensus 497 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 524 (801)
|+|++..+..+..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777755555555444 777777777665
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=7.7e-10 Score=117.63 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=47.0
Q ss_pred EEecCC-CCCCCCC-CccccccEEEecC-CCCCCCCccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcc
Q 044830 399 LDVQSN-LLQRLPF-ILSSRIRFLSVSD-NKLTGEFPSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQF 475 (801)
Q Consensus 399 L~l~~n-~l~~~~~-~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l 475 (801)
++++++ .++.+|. ..+++|+.|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 344444 4444443 1123445555543 555444444445555555555555555544444445555555555555555
Q ss_pred cccCCccccCCCCccEEECCCCcCC
Q 044830 476 RGSIPQIFSKCYDLVALNLNDNELE 500 (801)
Q Consensus 476 ~~~~~~~~~~l~~L~~L~L~~n~l~ 500 (801)
++..+..|..++ |+.|+|.+|.+.
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 443333333333 555555555443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=7.2e-10 Score=117.18 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=96.7
Q ss_pred ccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCCCCcCCCCcchhcc--CCCCCCEEEccC--CcCcccC-CCCC
Q 044830 481 QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVGNNKINDAFPYWTA--TLPRLQVLVLRS--NSFHGPI-YNNV 555 (801)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~--N~l~~~~-~~~~ 555 (801)
..+..+|+|+.|+|++|.-. .++. +. +++|+.|++..|.+.......+. .+|+|+.|+|+. |...+.. ...+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 33455566666666665211 1222 22 56777777777766544333333 577788877753 2211110 0001
Q ss_pred CCCC--CCCCCCcEEEccCCcCCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccce
Q 044830 556 PSIK--RPFPELRIIDISRNGFTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFT 633 (801)
Q Consensus 556 ~~~~--~~l~~L~~LdLs~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 633 (801)
...+ ..+|+|+.|+|++|.+.+..+..++.. ..++.|+
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------------------------------~~~~~L~ 282 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----------------------------------------DILPQLE 282 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC----------------------------------------SSGGGCS
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC----------------------------------------ccCCCCC
Confidence 0011 357899999999998875433322110 1246789
Q ss_pred EEEccCCeeeee----ccccccccccCceEeCcCccccccCCccccC-CCCCCeEeCcCCc
Q 044830 634 TIDLSNNRFEGM----IPKEVGKLSSLKLLNFSHNILRGEIPVELTS-LTALSVLNLSFNQ 689 (801)
Q Consensus 634 ~LdLs~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~L~ls~N~ 689 (801)
.||||.|.+.+. ++..+.++++|+.|+|++|.++...-..+.. + ...++++.++
T Consensus 283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999999998864 4555667899999999999887654333433 2 3567777776
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.77 E-value=6.8e-07 Score=95.99 Aligned_cols=109 Identities=13% Similarity=0.249 Sum_probs=56.9
Q ss_pred cccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCCC
Q 044830 433 SSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCGD 512 (801)
Q Consensus 433 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 512 (801)
..+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++..-...|.+|.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34445555555555443 33333445555555555555433 33333445555566666666555555444455566666
Q ss_pred CcEEeCCCCcCCCCcchhccCCCCCCEEEccC
Q 044830 513 LEVLDVGNNKINDAFPYWTATLPRLQVLVLRS 544 (801)
Q Consensus 513 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 544 (801)
|+.++|..+ +..+...+|.++.+|+.+.+..
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 666666433 4444445555666666555543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=3.4e-09 Score=112.02 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=112.0
Q ss_pred cccCCCCCEEECcCCCCc---------ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCc
Q 044830 435 ICNLSTIEYLNLSNNSLS---------GMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPP 505 (801)
Q Consensus 435 l~~l~~L~~L~Ls~n~i~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 505 (801)
+..+++|+.|.+...... +.+...+..+++|+.|.+++|.-. .++. +. +++|+.|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 445677777777554321 123344566788888888777311 2232 33 67888888888877543333
Q ss_pred ccc--CCCCCcEEeCCC--CcCCCC-----cchhc--cCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCc
Q 044830 506 SLA--NCGDLEVLDVGN--NKINDA-----FPYWT--ATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNG 574 (801)
Q Consensus 506 ~l~--~l~~L~~L~Ls~--n~i~~~-----~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~ 574 (801)
.+. .+++|+.|+|+. |...+. +...+ ..+|+|++|.|++|.+.+.....+... ..+++|++|||+.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCC
Confidence 333 678888888753 221111 11122 257899999999998764332211111 347899999999999
Q ss_pred CCccCcHHHHhhhhhhhccCCCCCcccccccCCCCceeeEEEEeccchhhhhhhcccceEEEccCCeeeeeccccccc-c
Q 044830 575 FTGLLPARYFQSLKAMMHGDNDDIDLDYMNSAGYDQYYSMILTYKGVDLEMERVLNIFTTIDLSNNRFEGMIPKEVGK-L 653 (801)
Q Consensus 575 l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~-l 653 (801)
+.+..+..+...++ .++.|+.|||++|.++...-..+.. +
T Consensus 291 L~d~G~~~L~~~L~---------------------------------------~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 291 LTDEGARLLLDHVD---------------------------------------KIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp CBHHHHHHHHTTHH---------------------------------------HHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CChHHHHHHHhhcc---------------------------------------cCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 87654433322222 2467899999999887553333332 2
Q ss_pred ccCceEeCcCcc
Q 044830 654 SSLKLLNFSHNI 665 (801)
Q Consensus 654 ~~L~~L~Ls~N~ 665 (801)
...++++.++
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 3668998887
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=1.3e-06 Score=93.88 Aligned_cols=134 Identities=12% Similarity=0.155 Sum_probs=100.5
Q ss_pred ccccccCCCCCEEECcCCCCcccCCccccCCCCCCEEeCCCCcccccCCccccCCCCccEEECCCCcCCCCCCccccCCC
Q 044830 432 PSSICNLSTIEYLNLSNNSLSGMIPQCLANFDSLSLLDLRKNQFRGSIPQIFSKCYDLVALNLNDNELEGKLPPSLANCG 511 (801)
Q Consensus 432 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 511 (801)
...+..+..|+.+.+..+ +......+|.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +.......|.+|.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 345667788888888665 44455667888899999999876 66566778888999999998754 5445556788999
Q ss_pred CCcEEeCCCCcCCCCcchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCC
Q 044830 512 DLEVLDVGNNKINDAFPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRN 573 (801)
Q Consensus 512 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N 573 (801)
+|+.+.+.++.+..+...+|.++.+|+.+.|..+ +..... .++.++.+|+.+.+..+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV----YAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH----HHhhCCCCCCEEEECCc
Confidence 9999999988888888888999999999998754 332222 23477888888887544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=2.3e-08 Score=95.18 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=39.9
Q ss_pred ccceEEEccCCeeeee----ccccccccccCceEeC--cCcccccc----CCccccCCCCCCeEeCcCCcce
Q 044830 630 NIFTTIDLSNNRFEGM----IPKEVGKLSSLKLLNF--SHNILRGE----IPVELTSLTALSVLNLSFNQLV 691 (801)
Q Consensus 630 ~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~ 691 (801)
+.|++|||++|.|... +...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3466777777776643 3455666677777777 66777643 3344555577777777777764
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=2.8e-09 Score=106.59 Aligned_cols=24 Identities=17% Similarity=-0.096 Sum_probs=16.7
Q ss_pred CCcccceeEeCCCCCcEEEEEcCC
Q 044830 26 DCCSWDGIICDEMTGHVIGLDLSS 49 (801)
Q Consensus 26 ~~c~w~gv~c~~~~~~v~~L~L~~ 49 (801)
.-|+|.|+.|+....+|..+...+
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~ 99 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSS 99 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred HHHhcCcEEECCCCCEEEEEEecC
Confidence 468999999987655665554433
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=6.7e-08 Score=92.00 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=37.0
Q ss_pred ccccCCCCccEEECCCC-cCCCC----CCccccCCCCCcEEeCCCCcCCCCc----chhccCCCCCCEEEccCCcCc
Q 044830 481 QIFSKCYDLVALNLNDN-ELEGK----LPPSLANCGDLEVLDVGNNKINDAF----PYWTATLPRLQVLVLRSNSFH 548 (801)
Q Consensus 481 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~ 548 (801)
..+...+.|++|+|++| .+... +...+...++|++|+|++|++.+.. ...+...+.|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34556667777777777 66532 2334455666777777777665432 222333344555555555444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=2e-06 Score=85.88 Aligned_cols=67 Identities=33% Similarity=0.378 Sum_probs=57.1
Q ss_pred hcccceEEEccCCeeee--eccccccccccCceEeCcCccccccCCccccCCC--CCCeEeCcCCcceecCCC
Q 044830 628 VLNIFTTIDLSNNRFEG--MIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLT--ALSVLNLSFNQLVGPIPQ 696 (801)
Q Consensus 628 ~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~iP~ 696 (801)
.++.|+.|+||+|+|++ .+|..++.+++|+.|+|++|+|++. ..+..+. .|++|+|++|++++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 46789999999999998 4567788999999999999999975 3344444 999999999999998874
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=1.8e-05 Score=73.09 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=38.6
Q ss_pred CCCEEEccCccCcccCcccccCCCCCCEEEccccc-CcccCcccccCC----CCCCEEEcCCCC-CccccCccccCCCCC
Q 044830 219 PLRILDLSITKFSGKIPDTIGNLRDLKFLDLYVCY-FDGQVPASLSNL----KQLTVLNLEDNQ-FSGEFPDVFGNLSKL 292 (801)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L 292 (801)
.|+.||++++.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333444555555555555553 443322333332 245555555543 443333334444555
Q ss_pred cEeeccCe
Q 044830 293 TRISLAHL 300 (801)
Q Consensus 293 ~~L~L~~n 300 (801)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=1.4e-05 Score=73.75 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=58.6
Q ss_pred CCCCEEEcccccCcccCcccccCCCCCCEEEcCCCC-CccccCccccCC----CCCcEeeccCee-eeeeCCccCcCCCC
Q 044830 242 RDLKFLDLYVCYFDGQVPASLSNLKQLTVLNLEDNQ-FSGEFPDVFGNL----SKLTRISLAHLN-FTGQLPLSAFNLTQ 315 (801)
Q Consensus 242 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 315 (801)
..|+.||+++|.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 578888888888877666667788888888888884 665444455553 368888888774 65443344556777
Q ss_pred CCEEEccccc
Q 044830 316 LSLLELSRNQ 325 (801)
Q Consensus 316 L~~L~l~~n~ 325 (801)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00013 Score=68.74 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=5.5
Q ss_pred CCCccEEECCC
Q 044830 486 CYDLVALNLND 496 (801)
Q Consensus 486 l~~L~~L~L~~ 496 (801)
-+.|++|+|++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34455555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.0001 Score=69.41 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=33.4
Q ss_pred ccCCCCCcEEeCCCC-cCCCC----cchhccCCCCCCEEEccCCcCcccCCCCCCCCCCCCCCCcEEEccCCcCC
Q 044830 507 LANCGDLEVLDVGNN-KINDA----FPYWTATLPRLQVLVLRSNSFHGPIYNNVPSIKRPFPELRIIDISRNGFT 576 (801)
Q Consensus 507 l~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 576 (801)
+.+-+.|++|+|++| +|.+. +.+.+..-..|+.|+|++|.+.......+...+..-+.|+.|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344566777777764 66432 23334444555555555555543332222222223344444444444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0021 Score=56.38 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=48.7
Q ss_pred eEEEccCCeee-eeccccccccccCceEeCcCccccccCCccccCCCCCCeEeCcCCccee
Q 044830 633 TTIDLSNNRFE-GMIPKEVGKLSSLKLLNFSHNILRGEIPVELTSLTALSVLNLSFNQLVG 692 (801)
Q Consensus 633 ~~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 692 (801)
..+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47899999997 35665443 479999999999998878889999999999999998864
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.0082 Score=52.55 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=28.3
Q ss_pred EEEecCCCCC--CCCCCccccccEEEecCCCCCCCCccccccCCCCCEEECcCCCC
Q 044830 398 HLDVQSNLLQ--RLPFILSSRIRFLSVSDNKLTGEFPSSICNLSTIEYLNLSNNSL 451 (801)
Q Consensus 398 ~L~l~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 451 (801)
.++.+++.++ .+|....++++.|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555666555 55544444555555555555544444445555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.69 E-value=37 Score=27.39 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=20.3
Q ss_pred CCccccCCCCCcEEeCCCCcCCCCcchhccCCCCCCEEEccC
Q 044830 503 LPPSLANCGDLEVLDVGNNKINDAFPYWTATLPRLQVLVLRS 544 (801)
Q Consensus 503 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 544 (801)
-...|.+|.+|+.+.|-.+ ++.+...+|.++.+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344555555555555433 3334444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.84 E-value=41 Score=27.10 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=16.8
Q ss_pred ccccCCCCccEEECCCCcCCCCCCccccCCCCCcEEeCC
Q 044830 481 QIFSKCYDLVALNLNDNELEGKLPPSLANCGDLEVLDVG 519 (801)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 519 (801)
..|.++.+|+.+.|-.+ ++.+-...|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444432 222333445555555555554
Done!