BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044831
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 GYGSSCKCGSDCNVCRMYPDLSYSESPTT 37
GYG++ K + N C + PDL +S TT
Sbjct: 324 GYGATAKSATVTNFCGIGPDLVHSVYDTT 352
>pdb|4E30|A Chain A, X-Ray Structure Of The H181nE224Q DOUBLE MUTANT OF TCAB9,
A C-3'- Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 GYGSSCKCGSDCNVCRMYPDLSYSESPTT 37
GYG++ K + N C + PDL +S TT
Sbjct: 324 GYGATAKSATVTNFCGIGPDLVHSVYDTT 352
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 GYGSSCKCGSDCNVCRMYPDLSYSESPTT 37
GYG++ K + N C + PDL +S TT
Sbjct: 324 GYGATAKSATVTNFCGIGPDLVHSVYDTT 352
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 GYGSSCKCGSDCNVCRMYPDLSYSESPTT 37
GYG++ K + N C + PDL +S TT
Sbjct: 324 GYGATAKSATVTNFCGIGPDLVHSVYDTT 352
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 GYGSSCKCGSDCNVCRMYPDLSYSESPTT 37
GYG++ K + N C + PDL +S TT
Sbjct: 324 GYGATAKSATVTNFCGIGPDLVHSVYDTT 352
>pdb|4E2W|A Chain A, X-Ray Structure Of The H181n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 GYGSSCKCGSDCNVCRMYPDLSYSESPTT 37
GYG++ K + N C + PDL +S TT
Sbjct: 324 GYGATAKSATVTNFCGIGPDLVHSVYDTT 352
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 GYGSSCKCGSDCNVCRMYPDLSYSESPTT 37
GYG++ K + N C + PDL +S TT
Sbjct: 324 GYGATAKSATVTNFCGIGPDLVHSVYDTT 352
>pdb|1GFF|1 Chain 1, The Atomic Structure Of The Degraded Procapsid Particle Of
The Bacteriophage G4: Induced Structural Changes In The
Presence Of Calcium Ions And Functional Implications
Length = 426
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 27 PDLSYSESPTT---TTDILVLGDVYAKMHYE 54
PD SE+ TT T DI+ L YAK+H E
Sbjct: 175 PDTRTSENMTTGTSTIDIMGLQAAYAKLHTE 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,622,667
Number of Sequences: 62578
Number of extensions: 90639
Number of successful extensions: 215
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)