BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044836
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 72/83 (86%)
Query: 6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
QYILET+V+PREHE +KELRE+T KHP N M ++ DE QFLSMLLKLINAKNTMEIGVYT
Sbjct: 31 QYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT 90
Query: 66 GYSLLVTALAIPDDGKVQWMNTN 88
GYSLL TALAIP+DGK+ M+ N
Sbjct: 91 GYSLLATALAIPEDGKILAMDIN 113
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 65/83 (78%)
Query: 4 ISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGV 63
+ QYIL T+VYPRE LKELRE E HP ++M ++P Q +S +LKL+NAK T+E+GV
Sbjct: 20 LCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGV 79
Query: 64 YTGYSLLVTALAIPDDGKVQWMN 86
+TGYSLL+TAL+IPDDGK+ ++
Sbjct: 80 FTGYSLLLTALSIPDDGKITAID 102
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
+Y+L+ ++ REH L LR+ T M AP++AQF+ ML++L AK +E+G +T
Sbjct: 14 KYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFT 71
Query: 66 GYSLLVTALAIPDDGKV 82
GYS L +LA+PDDG+V
Sbjct: 72 GYSALAMSLALPDDGQV 88
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 3 NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG 62
++ +YI +V RE + +LR+ T Q M +P+E QFL++L K+ AK +EIG
Sbjct: 11 SLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIG 68
Query: 63 VYTGYSLLVTALAIPDDGKV-------QWMN 86
+TGYS L A A+P+DGK+ +W N
Sbjct: 69 TFTGYSSLCFASALPEDGKILCCDVSEEWTN 99
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella
Burnetii
Length = 225
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 6 QYILETTVYPREHECLKELRELTEKHPQNFMF-SAPDEAQFLSMLLKLINAKNTMEIGVY 64
QY+L+ ++ RE L ELRE T + + +AP++AQ L++L+KL AK ++IG +
Sbjct: 17 QYLLQVSL--REPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVIDIGTF 74
Query: 65 TGYSLLVTALAIPDDG 80
TGYS + LA+P DG
Sbjct: 75 TGYSAIAXGLALPKDG 90
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 6 QYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65
QY+L ++ REH L+ LR LT + PQ ++AQ L+ L +LI AK +++G +T
Sbjct: 23 QYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFT 80
Query: 66 GYSLLVTALAIPDDGKV 82
GYS L ALA+P DG+V
Sbjct: 81 GYSALALALALPADGRV 97
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 21 LKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG 80
L +LR T P M +P++AQFL +L+ L AK +EIGV+ GYS L AL +P DG
Sbjct: 39 LAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDG 98
Query: 81 KV 82
++
Sbjct: 99 QI 100
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKV 82
A ++ QFL++L++L AK +EIG GYS + A +P DG++
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQL 91
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase
From Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase
From Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKV 82
+P + +FL +L+++ A+N +EIG GYS + A + G+V
Sbjct: 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRV 86
>pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|C Chain C, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|E Chain E, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
pdb|3E0J|G Chain G, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
Length = 476
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 24 LRELTEKH-----PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD 78
LRE++E+H P + PD+ L L+ I K T+++ ++L ++ D
Sbjct: 115 LREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRD 174
Query: 79 DGK 81
DGK
Sbjct: 175 DGK 177
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKV 82
P ++ F++M+L + ++ GV +G V A A+ GKV
Sbjct: 98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKV 140
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88
+ L++ N KN +EIG GYS A +I DD V + N
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERN 104
>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma
Brucei
Length = 300
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 4 ISQYILETTVYPREHECLKELRELTEKHPQNFMF 37
++ YI + R + LKE+REL EK + F
Sbjct: 81 LTGYINNVDIIGRIRDTLKEVRELREKEDKKLTF 114
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 44 QFLSMLLKLINAKNTM---EIGVYTGYSLLVTALAIPDDGKV 82
+ M+ +L++ K M EIG GY VTA + +DG V
Sbjct: 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLV 105
>pdb|3DZV|A Chain A, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
pdb|3DZV|B Chain B, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
Length = 273
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 19 ECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTAL 74
E ++ LR+ T+K PQ + + +S ++ E+ +TG LV AL
Sbjct: 153 ELIQALRQQTQKFPQTVFLATGIQDVLVSQEQVIVLQNGVPELDCFTGTGDLVGAL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,644,391
Number of Sequences: 62578
Number of extensions: 82871
Number of successful extensions: 219
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 15
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)