Query 044836
Match_columns 90
No_of_seqs 121 out of 1145
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02589 caffeoyl-CoA O-methyl 99.9 3.3E-23 7.1E-28 146.4 11.1 88 2-89 27-114 (247)
2 PF01596 Methyltransf_3: O-met 99.9 3.8E-22 8.2E-27 137.6 8.9 78 10-89 2-80 (205)
3 COG4122 Predicted O-methyltran 99.9 1.5E-21 3.2E-26 135.9 10.1 85 2-89 10-94 (219)
4 PLN02476 O-methyltransferase 99.9 4.1E-21 8.8E-26 137.7 10.8 85 2-89 69-153 (278)
5 KOG1663 O-methyltransferase [S 99.9 3.5E-21 7.7E-26 134.4 9.6 88 3-90 20-109 (237)
6 PLN02781 Probable caffeoyl-CoA 99.9 9E-21 1.9E-25 132.6 11.2 88 2-89 14-103 (234)
7 COG2518 Pcm Protein-L-isoaspar 99.1 1.4E-10 3.1E-15 80.4 4.2 72 15-89 28-104 (209)
8 PRK13942 protein-L-isoaspartat 99.1 2.2E-10 4.9E-15 78.9 5.0 53 37-89 59-111 (212)
9 PF01135 PCMT: Protein-L-isoas 99.0 1.1E-09 2.4E-14 75.9 7.5 85 4-89 5-107 (209)
10 TIGR00080 pimt protein-L-isoas 99.0 1.5E-09 3.2E-14 74.6 6.7 52 38-89 61-112 (215)
11 PRK00121 trmB tRNA (guanine-N( 99.0 2.4E-10 5.2E-15 78.1 2.7 69 16-89 6-74 (202)
12 PRK13944 protein-L-isoaspartat 99.0 7.9E-10 1.7E-14 75.7 4.9 50 40-89 58-107 (205)
13 PRK00312 pcm protein-L-isoaspa 98.9 1.3E-08 2.8E-13 69.6 8.0 82 3-89 11-110 (212)
14 PRK07402 precorrin-6B methylas 98.8 2.8E-08 6.1E-13 67.2 6.4 57 30-89 18-74 (196)
15 PRK08287 cobalt-precorrin-6Y C 98.7 7.2E-08 1.6E-12 64.7 6.4 50 39-89 16-65 (187)
16 PF12847 Methyltransf_18: Meth 98.7 2.9E-08 6.2E-13 60.8 4.1 35 54-89 1-35 (112)
17 PLN03075 nicotianamine synthas 98.6 1.2E-07 2.7E-12 68.8 5.6 51 38-89 108-159 (296)
18 TIGR03587 Pse_Me-ase pseudamin 98.6 1.7E-07 3.8E-12 64.4 6.1 41 48-89 37-77 (204)
19 TIGR00138 gidB 16S rRNA methyl 98.6 4.4E-07 9.6E-12 61.3 7.7 38 51-89 39-76 (181)
20 PF05175 MTS: Methyltransferas 98.6 2.2E-07 4.8E-12 61.8 6.0 44 45-89 22-65 (170)
21 COG2890 HemK Methylase of poly 98.6 1.4E-07 3E-12 67.8 5.4 53 36-89 90-144 (280)
22 COG2519 GCD14 tRNA(1-methylade 98.5 8.1E-08 1.8E-12 68.4 4.0 52 37-89 78-129 (256)
23 PRK00107 gidB 16S rRNA methylt 98.5 1.8E-07 3.9E-12 63.7 5.4 35 54-89 45-79 (187)
24 PF08704 GCD14: tRNA methyltra 98.5 1.1E-07 2.4E-12 67.5 4.5 53 36-89 23-75 (247)
25 PRK01544 bifunctional N5-gluta 98.5 7.4E-07 1.6E-11 68.6 9.3 54 35-89 92-172 (506)
26 TIGR02469 CbiT precorrin-6Y C5 98.5 2.9E-07 6.3E-12 56.8 5.8 38 51-89 16-53 (124)
27 PRK13943 protein-L-isoaspartat 98.5 3.4E-07 7.4E-12 67.1 6.3 40 50-89 76-115 (322)
28 PF13847 Methyltransf_31: Meth 98.5 2.8E-07 6E-12 59.9 4.8 37 53-89 2-38 (152)
29 TIGR02752 MenG_heptapren 2-hep 98.4 5.6E-07 1.2E-11 61.8 6.0 41 49-89 40-80 (231)
30 PRK00377 cbiT cobalt-precorrin 98.4 7.9E-07 1.7E-11 60.3 6.4 40 50-89 36-75 (198)
31 TIGR03533 L3_gln_methyl protei 98.4 6.6E-07 1.4E-11 64.2 6.0 52 37-89 100-155 (284)
32 PRK04266 fibrillarin; Provisio 98.4 5.1E-07 1.1E-11 63.2 5.1 47 42-89 58-106 (226)
33 PRK04457 spermidine synthase; 98.4 1.1E-06 2.4E-11 62.5 6.4 46 43-89 55-100 (262)
34 PRK01683 trans-aconitate 2-met 98.4 6.3E-07 1.4E-11 62.6 5.0 39 50-89 27-65 (258)
35 TIGR00438 rrmJ cell division p 98.4 8.3E-07 1.8E-11 59.7 5.3 40 50-89 28-67 (188)
36 TIGR00477 tehB tellurite resis 98.4 6.8E-07 1.5E-11 60.7 4.8 39 48-89 24-62 (195)
37 PF04989 CmcI: Cephalosporin h 98.4 9.8E-07 2.1E-11 61.3 5.6 57 31-88 10-69 (206)
38 PRK11188 rrmJ 23S rRNA methylt 98.4 1.1E-06 2.3E-11 60.6 5.6 38 52-89 49-86 (209)
39 TIGR00537 hemK_rel_arch HemK-r 98.4 1E-06 2.2E-11 58.7 5.4 46 40-89 6-51 (179)
40 PRK06202 hypothetical protein; 98.3 1.1E-06 2.4E-11 60.7 5.5 47 43-89 49-98 (232)
41 PLN02233 ubiquinone biosynthes 98.3 1.1E-06 2.3E-11 62.4 5.5 40 50-89 69-108 (261)
42 PRK14103 trans-aconitate 2-met 98.3 1.1E-06 2.4E-11 61.6 4.7 39 50-89 25-63 (255)
43 TIGR00536 hemK_fam HemK family 98.3 2E-06 4.3E-11 61.5 6.0 52 37-89 93-148 (284)
44 PF01209 Ubie_methyltran: ubiE 98.3 1.4E-06 3E-11 61.2 4.6 43 47-89 40-82 (233)
45 PRK14966 unknown domain/N5-glu 98.3 1.2E-05 2.6E-10 61.0 9.8 52 37-89 233-285 (423)
46 PF06325 PrmA: Ribosomal prote 98.3 4.1E-06 8.8E-11 60.9 7.1 47 41-89 147-194 (295)
47 KOG2904 Predicted methyltransf 98.3 2.4E-06 5.2E-11 62.0 5.8 54 35-89 123-182 (328)
48 COG4123 Predicted O-methyltran 98.3 1.5E-06 3.2E-11 61.9 4.5 53 35-89 26-78 (248)
49 TIGR03534 RF_mod_PrmC protein- 98.2 2.9E-06 6.3E-11 58.6 5.8 51 38-89 69-121 (251)
50 PRK11207 tellurite resistance 98.2 1.9E-06 4E-11 58.7 4.7 36 51-89 27-62 (197)
51 PRK00274 ksgA 16S ribosomal RN 98.2 2.8E-06 6.1E-11 60.5 5.7 49 38-89 26-74 (272)
52 PRK08317 hypothetical protein; 98.2 3.7E-06 7.9E-11 57.0 6.0 44 46-89 11-54 (241)
53 PRK09328 N5-glutamine S-adenos 98.2 2.3E-06 5.1E-11 60.0 5.2 52 37-89 88-142 (275)
54 PRK11805 N5-glutamine S-adenos 98.2 3.2E-06 7E-11 61.4 5.8 52 37-89 112-167 (307)
55 PRK14896 ksgA 16S ribosomal RN 98.2 3.9E-06 8.5E-11 59.3 5.9 50 37-89 12-61 (258)
56 PRK15451 tRNA cmo(5)U34 methyl 98.2 5.9E-06 1.3E-10 57.9 6.4 37 53-89 55-92 (247)
57 PRK14968 putative methyltransf 98.2 5.1E-06 1.1E-10 54.9 5.8 44 43-89 12-55 (188)
58 COG2226 UbiE Methylase involve 98.2 3.8E-06 8.2E-11 59.4 5.2 37 52-89 49-85 (238)
59 COG2264 PrmA Ribosomal protein 98.2 3.6E-06 7.7E-11 61.4 5.0 35 53-89 161-195 (300)
60 COG2242 CobL Precorrin-6B meth 98.2 7.6E-06 1.7E-10 56.1 6.3 55 32-89 14-68 (187)
61 TIGR00091 tRNA (guanine-N(7)-) 98.2 2.7E-06 5.9E-11 57.7 4.1 36 53-89 15-50 (194)
62 PRK15001 SAM-dependent 23S rib 98.2 3.7E-06 8E-11 62.9 5.0 34 55-89 229-262 (378)
63 COG4106 Tam Trans-aconitate me 98.1 5.3E-06 1.1E-10 58.5 5.3 39 50-89 26-64 (257)
64 TIGR02072 BioC biotin biosynth 98.1 5.5E-06 1.2E-10 56.3 5.4 36 53-89 33-68 (240)
65 PRK00517 prmA ribosomal protei 98.1 7.1E-06 1.5E-10 57.7 6.1 47 41-89 105-152 (250)
66 PRK14902 16S rRNA methyltransf 98.1 3.9E-06 8.4E-11 63.4 5.0 50 40-89 236-285 (444)
67 PRK14903 16S rRNA methyltransf 98.1 6.7E-06 1.4E-10 62.2 5.9 49 41-89 224-272 (431)
68 PRK14904 16S rRNA methyltransf 98.1 5E-06 1.1E-10 62.9 5.1 47 43-89 239-285 (445)
69 TIGR02021 BchM-ChlM magnesium 98.1 6.8E-06 1.5E-10 56.3 5.3 35 52-89 53-87 (219)
70 PRK11036 putative S-adenosyl-L 98.1 6E-06 1.3E-10 57.9 5.1 34 53-89 43-76 (255)
71 PRK05785 hypothetical protein; 98.1 8E-06 1.7E-10 56.8 5.6 43 45-89 41-84 (226)
72 PRK12335 tellurite resistance 98.1 6.2E-06 1.3E-10 59.0 5.2 36 51-89 117-152 (287)
73 TIGR00740 methyltransferase, p 98.1 1.4E-05 3E-10 55.4 6.6 36 54-89 53-89 (239)
74 TIGR03704 PrmC_rel_meth putati 98.1 1.1E-05 2.4E-10 57.0 6.2 50 39-89 67-120 (251)
75 PRK07580 Mg-protoporphyrin IX 98.1 1.2E-05 2.7E-10 54.8 6.2 42 45-89 52-95 (230)
76 TIGR00446 nop2p NOL1/NOP2/sun 98.1 1E-05 2.3E-10 57.4 5.7 47 43-89 60-106 (264)
77 PRK11873 arsM arsenite S-adeno 98.1 5.4E-06 1.2E-10 58.5 4.1 40 50-89 73-112 (272)
78 PRK10258 biotin biosynthesis p 98.0 1.1E-05 2.3E-10 56.3 5.4 36 51-89 39-74 (251)
79 PF13489 Methyltransf_23: Meth 98.0 1.6E-05 3.6E-10 50.8 5.9 44 43-89 10-54 (161)
80 TIGR00406 prmA ribosomal prote 98.0 1.5E-05 3.4E-10 57.1 6.3 47 41-89 145-192 (288)
81 smart00650 rADc Ribosomal RNA 98.0 1.1E-05 2.3E-10 53.5 4.9 35 52-89 11-45 (169)
82 PTZ00146 fibrillarin; Provisio 98.0 8.3E-06 1.8E-10 59.3 4.7 38 52-89 130-167 (293)
83 PLN02244 tocopherol O-methyltr 98.0 1.7E-05 3.8E-10 58.1 6.5 35 53-89 117-151 (340)
84 PRK04148 hypothetical protein; 98.0 1.6E-05 3.5E-10 51.9 5.5 44 43-89 5-49 (134)
85 PRK14901 16S rRNA methyltransf 98.0 1.2E-05 2.6E-10 60.7 5.6 47 43-89 241-287 (434)
86 TIGR00755 ksgA dimethyladenosi 98.0 1.4E-05 3.1E-10 56.2 5.6 49 38-89 13-61 (253)
87 PLN02672 methionine S-methyltr 98.0 1.5E-05 3.2E-10 66.3 6.3 53 36-89 96-152 (1082)
88 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 1.5E-05 3.1E-10 53.8 5.3 38 52-89 37-74 (223)
89 TIGR00563 rsmB ribosomal RNA s 98.0 1.6E-05 3.6E-10 59.8 6.0 47 42-89 226-272 (426)
90 PF13578 Methyltransf_24: Meth 98.0 2.3E-06 4.9E-11 52.4 1.1 31 59-89 1-33 (106)
91 TIGR03840 TMPT_Se_Te thiopurin 98.0 1.5E-05 3.3E-10 55.2 5.3 33 54-89 34-66 (213)
92 smart00828 PKS_MT Methyltransf 98.0 1E-05 2.2E-10 55.3 4.4 33 56-89 1-33 (224)
93 PRK00216 ubiE ubiquinone/menaq 98.0 2.4E-05 5.3E-10 53.2 6.1 38 52-89 49-86 (239)
94 COG2813 RsmC 16S RNA G1207 met 98.0 1.4E-05 2.9E-10 58.3 5.0 49 39-89 144-192 (300)
95 PRK09489 rsmC 16S ribosomal RN 98.0 1.6E-05 3.4E-10 58.7 5.4 45 43-89 186-230 (342)
96 PRK11088 rrmA 23S rRNA methylt 98.0 8.2E-05 1.8E-09 52.7 8.8 36 54-89 85-122 (272)
97 TIGR03438 probable methyltrans 98.0 2.3E-05 4.9E-10 56.6 6.0 50 40-89 44-98 (301)
98 PF08242 Methyltransf_12: Meth 98.0 3.3E-06 7.1E-11 50.9 1.3 31 59-90 1-31 (99)
99 PTZ00338 dimethyladenosine tra 97.9 1.9E-05 4E-10 57.3 5.3 50 37-89 19-68 (294)
100 PRK10901 16S rRNA methyltransf 97.9 1.7E-05 3.7E-10 59.7 5.1 46 43-89 233-278 (427)
101 PRK15068 tRNA mo(5)U34 methylt 97.9 1.8E-05 3.8E-10 57.9 5.0 35 53-89 121-155 (322)
102 PRK06922 hypothetical protein; 97.9 2.3E-05 5E-10 62.3 5.7 44 45-89 409-452 (677)
103 KOG3191 Predicted N6-DNA-methy 97.9 1.8E-05 3.9E-10 54.5 4.5 38 52-89 41-78 (209)
104 PF13679 Methyltransf_32: Meth 97.9 6E-05 1.3E-09 48.8 6.5 47 43-89 10-63 (141)
105 PRK10909 rsmD 16S rRNA m(2)G96 97.9 3.5E-05 7.7E-10 53.0 5.6 43 45-89 44-86 (199)
106 PRK11705 cyclopropane fatty ac 97.9 2.5E-05 5.5E-10 58.3 5.2 36 52-89 165-200 (383)
107 PF03848 TehB: Tellurite resis 97.9 2.3E-05 5E-10 53.9 4.6 43 43-89 20-62 (192)
108 PF08241 Methyltransf_11: Meth 97.9 1.9E-05 4.2E-10 46.1 3.6 29 59-89 1-29 (95)
109 PTZ00098 phosphoethanolamine N 97.9 3E-05 6.5E-10 55.0 5.2 45 42-89 41-85 (263)
110 PF10294 Methyltransf_16: Puta 97.9 5.8E-05 1.3E-09 50.5 6.1 37 52-89 43-79 (173)
111 PRK14967 putative methyltransf 97.8 4.6E-05 1E-09 52.5 5.6 35 53-89 35-69 (223)
112 PRK00811 spermidine synthase; 97.8 2.8E-05 6.1E-10 55.8 4.6 36 53-89 75-110 (283)
113 PF13649 Methyltransf_25: Meth 97.8 2.2E-05 4.7E-10 47.6 3.5 32 58-89 1-34 (101)
114 TIGR01444 fkbM_fam methyltrans 97.8 2.1E-05 4.5E-10 50.1 3.4 32 57-89 1-32 (143)
115 PLN02396 hexaprenyldihydroxybe 97.8 2.6E-05 5.6E-10 57.3 4.3 33 54-89 131-163 (322)
116 PLN02336 phosphoethanolamine N 97.8 3.6E-05 7.8E-10 58.3 5.1 43 44-89 257-299 (475)
117 PRK13255 thiopurine S-methyltr 97.8 4.6E-05 9.9E-10 53.0 5.2 33 54-89 37-69 (218)
118 PRK05134 bifunctional 3-demeth 97.8 0.00011 2.5E-09 50.4 7.2 46 41-89 35-80 (233)
119 PF13659 Methyltransf_26: Meth 97.8 3.3E-05 7.2E-10 47.4 4.1 33 55-89 1-33 (117)
120 PHA03412 putative methyltransf 97.8 6.1E-05 1.3E-09 53.5 5.7 51 37-89 34-86 (241)
121 PLN02585 magnesium protoporphy 97.8 5.8E-05 1.2E-09 55.3 5.7 33 54-89 144-176 (315)
122 PRK14121 tRNA (guanine-N(7)-)- 97.8 4.1E-05 9E-10 57.6 5.0 36 53-89 121-156 (390)
123 TIGR00478 tly hemolysin TlyA f 97.8 3.6E-05 7.9E-10 54.1 4.3 35 53-89 74-108 (228)
124 COG2230 Cfa Cyclopropane fatty 97.8 4.7E-05 1E-09 55.2 4.6 38 50-89 68-105 (283)
125 PRK11727 23S rRNA mA1618 methy 97.7 4.5E-05 9.8E-10 56.1 4.4 35 54-89 114-148 (321)
126 PRK01581 speE spermidine synth 97.7 5.1E-05 1.1E-09 56.8 4.6 52 37-89 128-184 (374)
127 TIGR00452 methyltransferase, p 97.7 5.2E-05 1.1E-09 55.5 4.5 35 53-89 120-154 (314)
128 COG2263 Predicted RNA methylas 97.7 0.00016 3.5E-09 49.8 6.4 50 37-89 26-78 (198)
129 COG0030 KsgA Dimethyladenosine 97.7 0.00012 2.5E-09 52.6 5.6 37 50-89 26-62 (259)
130 PRK03522 rumB 23S rRNA methylu 97.7 0.0001 2.3E-09 53.4 5.5 34 53-89 172-205 (315)
131 KOG2915 tRNA(1-methyladenosine 97.7 8.7E-05 1.9E-09 53.9 4.9 52 36-88 88-139 (314)
132 PF02353 CMAS: Mycolic acid cy 97.7 3.6E-05 7.7E-10 55.3 2.9 38 50-89 58-95 (273)
133 COG2227 UbiG 2-polyprenyl-3-me 97.7 5.7E-05 1.2E-09 53.6 3.9 47 40-89 42-91 (243)
134 PHA03411 putative methyltransf 97.7 0.00016 3.4E-09 52.4 6.2 38 51-89 61-98 (279)
135 TIGR02716 C20_methyl_CrtF C-20 97.7 0.00012 2.5E-09 52.6 5.5 37 50-87 145-181 (306)
136 PLN02490 MPBQ/MSBQ methyltrans 97.7 9E-05 1.9E-09 54.9 4.9 35 54-89 113-147 (340)
137 PLN02366 spermidine synthase 97.6 0.00017 3.8E-09 52.6 6.1 51 38-89 70-125 (308)
138 cd02440 AdoMet_MTases S-adenos 97.6 0.0001 2.3E-09 42.4 3.6 31 57-89 1-31 (107)
139 TIGR00417 speE spermidine synt 97.5 0.00015 3.2E-09 51.6 4.5 36 53-89 71-106 (270)
140 PRK13168 rumA 23S rRNA m(5)U19 97.5 0.00019 4.1E-09 54.3 5.3 34 53-89 296-329 (443)
141 TIGR02081 metW methionine bios 97.5 0.00022 4.9E-09 48.0 5.0 35 53-89 12-46 (194)
142 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00026 5.6E-09 56.6 6.1 40 48-89 532-571 (702)
143 TIGR01983 UbiG ubiquinone bios 97.5 0.00036 7.7E-09 47.5 6.0 47 40-89 27-77 (224)
144 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00027 5.9E-09 51.5 5.5 44 45-89 11-54 (296)
145 PLN02336 phosphoethanolamine N 97.5 0.0002 4.4E-09 54.2 4.9 36 51-89 34-69 (475)
146 PRK15128 23S rRNA m(5)C1962 me 97.5 0.00027 5.8E-09 53.2 5.2 37 51-89 217-253 (396)
147 TIGR00479 rumA 23S rRNA (uraci 97.4 0.00026 5.7E-09 53.2 5.1 34 53-89 291-324 (431)
148 TIGR01177 conserved hypothetic 97.4 0.00036 7.8E-09 50.9 5.6 48 39-89 167-214 (329)
149 KOG2899 Predicted methyltransf 97.4 0.00018 3.9E-09 51.6 3.6 37 52-89 56-92 (288)
150 KOG0820 Ribosomal RNA adenine 97.4 0.00039 8.5E-09 50.6 5.4 48 39-89 43-90 (315)
151 PRK03612 spermidine synthase; 97.4 0.00028 6E-09 54.7 4.8 36 53-89 296-331 (521)
152 PF00398 RrnaAD: Ribosomal RNA 97.3 0.00035 7.5E-09 49.5 4.2 49 38-89 14-62 (262)
153 PF08003 Methyltransf_9: Prote 97.3 0.00038 8.2E-09 51.1 4.4 36 52-89 113-148 (315)
154 COG3963 Phospholipid N-methylt 97.3 0.00076 1.6E-08 46.1 5.3 54 36-89 30-83 (194)
155 TIGR02085 meth_trns_rumB 23S r 97.2 0.0007 1.5E-08 50.4 5.3 34 53-89 232-265 (374)
156 KOG1270 Methyltransferases [Co 97.2 0.00021 4.5E-09 51.6 2.4 31 56-89 91-121 (282)
157 smart00138 MeTrc Methyltransfe 97.2 0.00067 1.4E-08 48.3 5.0 36 54-89 99-142 (264)
158 TIGR02143 trmA_only tRNA (urac 97.2 0.00088 1.9E-08 49.6 5.7 47 40-89 180-229 (353)
159 KOG1541 Predicted protein carb 97.2 0.00039 8.5E-09 49.4 3.4 50 37-89 31-82 (270)
160 TIGR00095 RNA methyltransferas 97.2 0.0015 3.2E-08 44.5 6.0 43 45-89 40-82 (189)
161 KOG1661 Protein-L-isoaspartate 97.2 0.0006 1.3E-08 48.0 4.1 50 38-87 64-116 (237)
162 PF02390 Methyltransf_4: Putat 97.1 0.00087 1.9E-08 45.9 4.4 31 57-88 20-50 (195)
163 PLN02823 spermine synthase 97.1 0.00093 2E-08 49.4 4.8 36 53-89 102-137 (336)
164 COG0220 Predicted S-adenosylme 97.1 0.0017 3.7E-08 45.7 5.8 58 30-88 23-81 (227)
165 COG3510 CmcI Cephalosporin hyd 97.0 0.0012 2.6E-08 46.0 4.5 56 32-88 48-106 (237)
166 PF05724 TPMT: Thiopurine S-me 97.0 0.0013 2.7E-08 45.9 4.3 48 38-89 22-69 (218)
167 PRK05031 tRNA (uracil-5-)-meth 97.0 0.0023 5E-08 47.5 5.8 48 39-89 188-238 (362)
168 PRK04338 N(2),N(2)-dimethylgua 97.0 0.003 6.4E-08 47.4 6.4 34 55-89 58-91 (382)
169 PF06080 DUF938: Protein of un 96.9 0.0016 3.5E-08 45.2 4.3 43 45-88 14-58 (204)
170 KOG1499 Protein arginine N-met 96.9 0.0013 2.9E-08 48.8 3.9 35 52-88 58-92 (346)
171 PF09243 Rsm22: Mitochondrial 96.8 0.0033 7.2E-08 45.0 5.4 37 53-89 32-68 (274)
172 PF01728 FtsJ: FtsJ-like methy 96.8 0.005 1.1E-07 40.9 5.8 36 54-89 23-58 (181)
173 PRK13256 thiopurine S-methyltr 96.8 0.0032 7E-08 44.3 4.9 33 54-89 43-75 (226)
174 PF07021 MetW: Methionine bios 96.7 0.005 1.1E-07 42.5 5.2 35 53-89 12-46 (193)
175 PF02475 Met_10: Met-10+ like- 96.7 0.0017 3.7E-08 44.9 2.9 38 52-90 99-136 (200)
176 PRK11933 yebU rRNA (cytosine-C 96.7 0.0059 1.3E-07 47.1 6.1 39 51-89 110-148 (470)
177 PHA01634 hypothetical protein 96.5 0.0039 8.5E-08 41.0 3.6 35 53-89 27-61 (156)
178 KOG3420 Predicted RNA methylas 96.5 0.0046 1E-07 41.6 4.0 46 42-89 33-81 (185)
179 PF05401 NodS: Nodulation prot 96.4 0.0039 8.5E-08 43.2 3.5 32 55-89 44-75 (201)
180 PF00891 Methyltransf_2: O-met 96.3 0.011 2.5E-07 40.8 5.3 36 51-87 97-132 (241)
181 PF02527 GidB: rRNA small subu 96.2 0.0081 1.7E-07 40.9 3.9 31 57-88 51-81 (184)
182 COG4976 Predicted methyltransf 96.1 0.0027 5.8E-08 45.5 1.2 33 54-89 125-157 (287)
183 PF05185 PRMT5: PRMT5 arginine 96.0 0.012 2.6E-07 45.1 4.7 35 55-89 187-224 (448)
184 COG2521 Predicted archaeal met 96.0 0.0087 1.9E-07 43.0 3.6 37 50-89 130-167 (287)
185 PRK01544 bifunctional N5-gluta 96.0 0.011 2.5E-07 45.7 4.3 34 54-88 347-380 (506)
186 PF09445 Methyltransf_15: RNA 95.9 0.0096 2.1E-07 40.0 3.3 31 56-89 1-31 (163)
187 COG0357 GidB Predicted S-adeno 95.9 0.01 2.2E-07 41.5 3.5 33 55-88 68-100 (215)
188 PRK11760 putative 23S rRNA C24 95.9 0.034 7.4E-07 41.6 6.4 34 53-89 210-243 (357)
189 TIGR00308 TRM1 tRNA(guanine-26 95.9 0.026 5.6E-07 42.4 5.7 56 34-89 20-79 (374)
190 KOG3010 Methyltransferase [Gen 95.9 0.01 2.2E-07 42.6 3.3 44 43-89 21-65 (261)
191 PF01564 Spermine_synth: Sperm 95.8 0.016 3.4E-07 41.0 4.0 36 53-89 75-110 (246)
192 KOG2361 Predicted methyltransf 95.8 0.0051 1.1E-07 44.1 1.5 36 54-89 71-107 (264)
193 KOG1540 Ubiquinone biosynthesi 95.7 0.016 3.4E-07 42.0 4.0 36 54-89 100-140 (296)
194 COG0421 SpeE Spermidine syntha 95.7 0.023 5E-07 41.2 4.8 36 53-89 75-110 (282)
195 PF02384 N6_Mtase: N-6 DNA Met 95.7 0.055 1.2E-06 38.8 6.5 55 35-89 27-87 (311)
196 COG0293 FtsJ 23S rRNA methylas 95.6 0.023 4.9E-07 39.6 4.1 37 53-89 44-80 (205)
197 PF07279 DUF1442: Protein of u 95.3 0.03 6.5E-07 39.3 4.1 51 39-89 26-79 (218)
198 PF05206 TRM13: Methyltransfer 95.2 0.083 1.8E-06 37.9 6.2 48 42-89 3-57 (259)
199 COG3897 Predicted methyltransf 95.1 0.0084 1.8E-07 41.9 0.8 48 41-90 62-113 (218)
200 KOG1500 Protein arginine N-met 95.1 0.045 9.7E-07 41.5 4.6 35 53-89 176-210 (517)
201 PF12242 Eno-Rase_NADH_b: NAD( 95.1 0.059 1.3E-06 32.1 4.2 33 53-85 37-70 (78)
202 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.0 0.096 2.1E-06 37.7 6.1 49 41-89 72-120 (283)
203 PF01269 Fibrillarin: Fibrilla 95.0 0.043 9.3E-07 38.8 4.1 38 52-89 71-108 (229)
204 PF08123 DOT1: Histone methyla 94.8 0.056 1.2E-06 37.4 4.3 46 42-89 31-76 (205)
205 COG1565 Uncharacterized conser 94.6 0.096 2.1E-06 39.4 5.3 54 37-90 49-120 (370)
206 KOG1501 Arginine N-methyltrans 94.5 0.039 8.4E-07 43.0 3.2 29 57-87 69-97 (636)
207 COG4076 Predicted RNA methylas 94.4 0.084 1.8E-06 37.1 4.4 32 55-89 33-64 (252)
208 PF02636 Methyltransf_28: Puta 94.4 0.15 3.2E-06 35.8 5.7 36 55-90 19-61 (252)
209 TIGR02987 met_A_Alw26 type II 94.2 0.079 1.7E-06 41.0 4.2 52 38-89 8-73 (524)
210 KOG4300 Predicted methyltransf 93.8 0.055 1.2E-06 38.3 2.4 31 57-89 79-109 (252)
211 PF05958 tRNA_U5-meth_tr: tRNA 93.7 0.11 2.3E-06 38.6 3.9 51 36-89 175-228 (352)
212 COG0500 SmtA SAM-dependent met 93.7 0.13 2.8E-06 30.1 3.6 38 51-89 44-82 (257)
213 KOG2793 Putative N2,N2-dimethy 93.4 0.094 2E-06 37.5 3.2 24 54-77 86-109 (248)
214 KOG2187 tRNA uracil-5-methyltr 93.2 0.083 1.8E-06 41.4 2.8 49 38-89 363-415 (534)
215 KOG3115 Methyltransferase-like 93.1 0.22 4.8E-06 35.2 4.6 46 41-87 46-92 (249)
216 COG1889 NOP1 Fibrillarin-like 93.0 0.14 3.1E-06 36.0 3.5 46 43-89 63-110 (231)
217 COG0144 Sun tRNA and rRNA cyto 92.8 0.24 5.2E-06 36.8 4.7 51 39-89 141-192 (355)
218 COG1189 Predicted rRNA methyla 92.8 0.23 5.1E-06 35.5 4.4 34 53-88 78-111 (245)
219 PF05050 Methyltransf_21: Meth 92.7 0.15 3.3E-06 32.4 3.1 30 60-89 1-33 (167)
220 TIGR00006 S-adenosyl-methyltra 92.6 0.33 7.2E-06 35.7 5.1 37 52-89 18-54 (305)
221 PRK00536 speE spermidine synth 92.6 0.24 5.1E-06 35.6 4.3 35 52-89 70-104 (262)
222 PF03291 Pox_MCEL: mRNA cappin 92.6 0.21 4.6E-06 36.9 4.1 45 43-89 47-95 (331)
223 KOG2651 rRNA adenine N-6-methy 92.5 0.35 7.7E-06 37.1 5.3 44 43-88 142-185 (476)
224 PF04816 DUF633: Family of unk 92.4 0.17 3.7E-06 35.0 3.3 31 58-89 1-31 (205)
225 COG2520 Predicted methyltransf 92.3 0.22 4.7E-06 37.2 3.9 54 35-90 169-222 (341)
226 PF03602 Cons_hypoth95: Conser 92.2 0.38 8.3E-06 32.6 4.7 48 40-89 27-75 (183)
227 PF07091 FmrO: Ribosomal RNA m 92.1 0.2 4.4E-06 35.9 3.4 36 53-89 104-139 (251)
228 KOG4589 Cell division protein 92.0 0.32 6.9E-06 34.1 4.2 36 53-88 68-103 (232)
229 KOG1271 Methyltransferases [Ge 92.0 0.21 4.5E-06 34.9 3.2 48 41-89 47-101 (227)
230 KOG2730 Methylase [General fun 91.7 0.26 5.6E-06 35.2 3.5 50 37-89 77-126 (263)
231 PF04672 Methyltransf_19: S-ad 91.4 0.32 7E-06 35.2 3.9 50 40-89 50-105 (267)
232 PF05219 DREV: DREV methyltran 91.3 0.51 1.1E-05 34.1 4.8 33 54-89 94-126 (265)
233 TIGR03439 methyl_EasF probable 91.2 0.48 1E-05 34.9 4.7 50 40-89 57-114 (319)
234 COG1092 Predicted SAM-dependen 90.6 0.89 1.9E-05 34.6 5.8 39 48-89 211-250 (393)
235 KOG1596 Fibrillarin and relate 90.5 0.19 4E-06 36.5 1.9 39 51-89 153-191 (317)
236 PF01795 Methyltransf_5: MraW 90.2 0.58 1.3E-05 34.5 4.3 37 52-89 18-54 (310)
237 COG2265 TrmA SAM-dependent met 90.1 0.6 1.3E-05 35.8 4.5 51 36-89 271-325 (432)
238 PRK10742 putative methyltransf 89.4 0.78 1.7E-05 32.9 4.4 37 50-89 82-120 (250)
239 PF03686 UPF0146: Uncharacteri 89.3 1.4 3.1E-05 28.5 5.2 43 45-89 4-46 (127)
240 COG2384 Predicted SAM-dependen 88.4 1.3 2.9E-05 31.3 4.9 43 46-89 7-50 (226)
241 PF01170 UPF0020: Putative RNA 88.2 0.96 2.1E-05 30.3 4.0 52 38-89 12-71 (179)
242 COG1041 Predicted DNA modifica 87.5 1.2 2.6E-05 33.4 4.5 51 36-89 179-229 (347)
243 PF03059 NAS: Nicotianamine sy 86.8 0.81 1.8E-05 33.2 3.2 36 54-89 120-156 (276)
244 PF11899 DUF3419: Protein of u 86.6 1.4 3.1E-05 33.2 4.5 44 43-89 24-67 (380)
245 COG1255 Uncharacterized protei 86.5 2.2 4.7E-05 27.6 4.6 42 45-89 4-46 (129)
246 PF05971 Methyltransf_10: Prot 85.6 0.86 1.9E-05 33.5 2.8 33 56-89 104-136 (299)
247 cd01130 VirB11-like_ATPase Typ 85.4 4.8 0.0001 26.7 6.2 48 37-86 9-59 (186)
248 cd08283 FDH_like_1 Glutathione 85.1 2.7 5.9E-05 30.9 5.3 39 49-88 179-218 (386)
249 PF10672 Methyltrans_SAM: S-ad 84.8 3.2 6.9E-05 30.2 5.4 40 48-89 117-156 (286)
250 COG1063 Tdh Threonine dehydrog 84.6 1.8 3.9E-05 31.9 4.1 36 54-90 168-204 (350)
251 COG1352 CheR Methylase of chem 84.5 3.3 7.1E-05 29.9 5.3 36 54-89 96-139 (268)
252 PF01739 CheR: CheR methyltran 84.3 1 2.3E-05 30.9 2.6 36 54-89 31-74 (196)
253 KOG2811 Uncharacterized conser 83.7 3.2 7E-05 31.7 5.2 43 41-84 165-211 (420)
254 PF05711 TylF: Macrocin-O-meth 83.6 1.7 3.8E-05 31.0 3.6 57 31-87 44-111 (248)
255 KOG3201 Uncharacterized conser 83.4 0.33 7.2E-06 33.3 -0.1 49 40-89 12-64 (201)
256 PRK10611 chemotaxis methyltran 83.4 13 0.00029 27.0 8.1 51 39-89 99-157 (287)
257 KOG1098 Putative SAM-dependent 82.9 3.3 7.3E-05 33.7 5.2 65 21-89 12-79 (780)
258 KOG2920 Predicted methyltransf 82.5 1.3 2.9E-05 32.3 2.7 45 42-88 98-148 (282)
259 PLN02668 indole-3-acetate carb 82.2 0.92 2E-05 34.4 1.8 21 54-74 63-83 (386)
260 KOG1122 tRNA and rRNA cytosine 82.2 1.3 2.9E-05 34.2 2.7 37 53-89 240-276 (460)
261 PF04189 Gcd10p: Gcd10p family 82.1 7.3 0.00016 28.6 6.4 51 35-85 182-232 (299)
262 PRK09424 pntA NAD(P) transhydr 81.8 2.5 5.5E-05 33.2 4.1 35 53-89 163-198 (509)
263 PF01262 AlaDh_PNT_C: Alanine 81.4 2.9 6.3E-05 27.5 3.8 36 51-88 16-52 (168)
264 PF00070 Pyr_redox: Pyridine n 81.2 2.4 5.2E-05 24.2 3.0 32 57-90 1-33 (80)
265 PF07757 AdoMet_MTase: Predict 81.0 3.4 7.3E-05 26.3 3.8 33 43-75 43-79 (112)
266 PTZ00318 NADH dehydrogenase-li 79.9 4.4 9.5E-05 30.4 4.8 36 53-90 8-44 (424)
267 PF02005 TRM: N2,N2-dimethylgu 79.7 1.7 3.8E-05 32.7 2.6 56 34-89 24-84 (377)
268 COG3007 Uncharacterized paraqu 79.4 3.1 6.8E-05 31.1 3.7 29 53-81 39-68 (398)
269 KOG0024 Sorbitol dehydrogenase 79.4 3.2 6.9E-05 31.2 3.8 51 38-89 144-204 (354)
270 TIGR02782 TrbB_P P-type conjug 79.3 10 0.00022 27.5 6.4 48 38-87 117-170 (299)
271 PRK09564 coenzyme A disulfide 79.1 3.8 8.3E-05 30.6 4.2 35 56-90 1-36 (444)
272 COG1064 AdhP Zn-dependent alco 78.8 3.6 7.7E-05 30.8 3.9 37 51-89 163-200 (339)
273 COG4798 Predicted methyltransf 78.3 3.3 7.2E-05 29.3 3.4 43 44-87 39-81 (238)
274 KOG2360 Proliferation-associat 77.6 1.1 2.4E-05 34.2 0.9 44 46-89 205-248 (413)
275 PRK11199 tyrA bifunctional cho 77.5 7.2 0.00016 29.1 5.3 67 16-88 49-131 (374)
276 PRK13851 type IV secretion sys 77.3 10 0.00022 28.3 6.0 46 40-87 149-197 (344)
277 PRK06849 hypothetical protein; 77.3 3.3 7.2E-05 30.6 3.4 37 53-90 2-39 (389)
278 TIGR01627 A_thal_3515 uncharac 77.0 24 0.00051 25.1 7.5 69 17-90 4-72 (225)
279 COG1062 AdhC Zn-dependent alco 76.9 5.4 0.00012 30.2 4.4 46 42-89 174-220 (366)
280 PRK13894 conjugal transfer ATP 76.8 19 0.00042 26.5 7.2 48 39-88 134-187 (319)
281 TIGR03169 Nterm_to_SelD pyridi 76.5 5.2 0.00011 29.0 4.2 32 57-90 1-36 (364)
282 PTZ00363 rab-GDP dissociation 76.3 4.2 9E-05 31.2 3.8 33 57-90 6-38 (443)
283 PF03141 Methyltransf_29: Puta 75.0 5.1 0.00011 31.6 3.9 22 54-75 117-138 (506)
284 TIGR00518 alaDH alanine dehydr 75.0 5.6 0.00012 29.7 4.1 34 54-89 166-200 (370)
285 COG0286 HsdM Type I restrictio 74.9 8.5 0.00019 29.9 5.2 53 37-89 169-224 (489)
286 COG1252 Ndh NADH dehydrogenase 74.8 6 0.00013 30.3 4.2 35 54-90 2-39 (405)
287 PF11312 DUF3115: Protein of u 74.7 6.2 0.00013 29.3 4.2 34 56-89 88-140 (315)
288 PRK11747 dinG ATP-dependent DN 74.7 14 0.0003 30.0 6.5 47 30-76 18-71 (697)
289 COG5459 Predicted rRNA methyla 74.7 0.94 2E-05 34.6 -0.1 36 53-88 112-147 (484)
290 PRK13656 trans-2-enoyl-CoA red 74.0 5.8 0.00013 30.4 4.0 34 53-86 39-73 (398)
291 COG0275 Predicted S-adenosylme 73.9 12 0.00026 27.8 5.5 45 45-89 11-58 (314)
292 PF03492 Methyltransf_7: SAM d 73.7 5.6 0.00012 29.4 3.8 22 54-75 16-37 (334)
293 PF05148 Methyltransf_8: Hypot 72.7 14 0.00031 26.1 5.4 49 31-87 53-101 (219)
294 PRK13512 coenzyme A disulfide 72.4 6.8 0.00015 29.5 4.1 35 56-90 2-37 (438)
295 cd05188 MDR Medium chain reduc 72.3 8.6 0.00019 25.7 4.2 34 53-88 133-167 (271)
296 PF07942 N2227: N2227-like pro 72.1 11 0.00025 27.2 5.0 32 55-89 57-88 (270)
297 TIGR00936 ahcY adenosylhomocys 71.7 24 0.00053 27.0 6.9 35 53-89 193-228 (406)
298 PF00743 FMO-like: Flavin-bind 71.6 4.2 9E-05 31.9 2.8 34 55-90 1-35 (531)
299 TIGR03819 heli_sec_ATPase heli 71.5 23 0.0005 26.3 6.6 48 38-87 163-213 (340)
300 COG4017 Uncharacterized protei 71.5 7.2 0.00016 27.6 3.7 39 49-89 39-77 (254)
301 cd08254 hydroxyacyl_CoA_DH 6-h 71.3 8.1 0.00018 27.1 4.1 35 52-88 163-198 (338)
302 COG5379 BtaA S-adenosylmethion 71.1 7.9 0.00017 29.1 4.0 37 50-89 59-95 (414)
303 PRK13512 coenzyme A disulfide 70.9 16 0.00035 27.5 5.8 45 43-89 136-181 (438)
304 PF04445 SAM_MT: Putative SAM- 70.6 4.5 9.7E-05 28.8 2.6 30 57-89 78-107 (234)
305 PRK09987 dTDP-4-dehydrorhamnos 70.3 7.2 0.00016 27.7 3.6 31 57-88 2-32 (299)
306 COG4962 CpaF Flp pilus assembl 70.2 19 0.00041 27.3 5.8 51 37-88 157-209 (355)
307 COG1867 TRM1 N2,N2-dimethylgua 70.1 7.8 0.00017 29.5 3.9 52 34-89 32-86 (380)
308 COG1232 HemY Protoporphyrinoge 70.0 8.4 0.00018 29.8 4.1 35 56-90 1-36 (444)
309 PRK08163 salicylate hydroxylas 70.0 8.3 0.00018 28.1 4.0 35 54-89 3-37 (396)
310 PRK09754 phenylpropionate diox 69.6 8.5 0.00018 28.5 4.0 36 54-89 2-38 (396)
311 PRK01747 mnmC bifunctional tRN 69.4 6.2 0.00013 31.4 3.4 35 55-89 58-103 (662)
312 PRK08328 hypothetical protein; 69.0 11 0.00024 26.2 4.2 36 52-88 24-60 (231)
313 PRK13900 type IV secretion sys 69.0 28 0.00061 25.7 6.6 44 42-87 149-195 (332)
314 PF11968 DUF3321: Putative met 68.8 4.7 0.0001 28.4 2.3 30 56-89 53-82 (219)
315 TIGR03329 Phn_aa_oxid putative 68.0 9.4 0.0002 28.9 4.0 31 57-88 26-58 (460)
316 PF01861 DUF43: Protein of unk 67.9 31 0.00067 24.8 6.3 67 20-89 2-77 (243)
317 PRK09273 hypothetical protein; 67.6 35 0.00077 24.0 6.5 61 16-77 14-85 (211)
318 PF01494 FAD_binding_3: FAD bi 67.3 9.9 0.00021 26.6 3.8 32 57-89 3-34 (356)
319 KOG0022 Alcohol dehydrogenase, 67.1 8.7 0.00019 29.0 3.5 39 50-89 188-227 (375)
320 COG0451 WcaG Nucleoside-diphos 66.9 8.3 0.00018 26.7 3.3 32 57-89 2-34 (314)
321 PRK05447 1-deoxy-D-xylulose 5- 66.6 9.3 0.0002 29.1 3.7 30 56-85 2-33 (385)
322 PRK15181 Vi polysaccharide bio 66.4 9.4 0.0002 27.6 3.6 33 54-87 14-47 (348)
323 PRK05690 molybdopterin biosynt 66.2 15 0.00032 25.8 4.5 36 52-88 29-65 (245)
324 PF13450 NAD_binding_8: NAD(P) 66.2 5.2 0.00011 22.5 1.8 25 65-89 4-29 (68)
325 COG4301 Uncharacterized conser 66.0 26 0.00057 25.8 5.7 52 38-89 58-116 (321)
326 PF03193 DUF258: Protein of un 65.8 10 0.00022 25.4 3.4 49 26-74 6-55 (161)
327 PRK13833 conjugal transfer pro 65.7 32 0.00068 25.5 6.3 48 38-87 129-182 (323)
328 PRK12770 putative glutamate sy 65.6 9.8 0.00021 27.7 3.6 35 53-89 16-51 (352)
329 KOG1975 mRNA cap methyltransfe 65.6 5.7 0.00012 30.1 2.4 35 53-89 116-150 (389)
330 KOG2334 tRNA-dihydrouridine sy 65.6 1.2 2.7E-05 34.4 -1.1 49 38-88 65-113 (477)
331 TIGR03201 dearomat_had 6-hydro 65.4 10 0.00022 27.3 3.7 36 52-89 164-200 (349)
332 PF03721 UDPG_MGDP_dh_N: UDP-g 65.0 2 4.3E-05 29.0 -0.1 31 57-89 2-33 (185)
333 PRK14729 miaA tRNA delta(2)-is 65.0 9.8 0.00021 27.9 3.5 33 54-87 3-36 (300)
334 TIGR02818 adh_III_F_hyde S-(hy 65.0 14 0.00031 26.9 4.4 38 51-89 182-220 (368)
335 PRK06847 hypothetical protein; 64.7 12 0.00026 27.0 3.9 35 54-89 3-37 (375)
336 cd00401 AdoHcyase S-adenosyl-L 64.5 14 0.0003 28.3 4.3 42 46-89 189-235 (413)
337 COG2072 TrkA Predicted flavopr 63.9 9.2 0.0002 29.2 3.3 32 53-86 173-205 (443)
338 TIGR02788 VirB11 P-type DNA tr 63.5 33 0.00072 24.8 6.0 33 54-86 143-178 (308)
339 PRK12771 putative glutamate sy 62.5 17 0.00037 28.4 4.6 34 53-88 135-169 (564)
340 PF01555 N6_N4_Mtase: DNA meth 62.4 26 0.00057 23.0 5.0 47 40-89 175-223 (231)
341 PRK12409 D-amino acid dehydrog 62.2 15 0.00032 27.1 4.0 31 56-89 2-34 (410)
342 cd08294 leukotriene_B4_DH_like 61.9 20 0.00043 25.1 4.5 38 49-88 138-177 (329)
343 PLN03154 putative allyl alcoho 61.5 18 0.0004 26.2 4.4 37 50-88 154-192 (348)
344 PRK11883 protoporphyrinogen ox 61.2 17 0.00037 26.8 4.2 34 56-89 1-35 (451)
345 PRK07236 hypothetical protein; 60.9 17 0.00036 26.7 4.1 35 54-89 5-39 (386)
346 TIGR01381 E1_like_apg7 E1-like 60.9 17 0.00037 29.7 4.3 37 51-88 334-371 (664)
347 PRK07877 hypothetical protein; 60.8 14 0.00031 30.3 4.0 37 52-89 104-141 (722)
348 PRK11783 rlmL 23S rRNA m(2)G24 60.7 21 0.00045 29.0 4.9 35 40-74 175-210 (702)
349 PF02254 TrkA_N: TrkA-N domain 60.6 4.6 0.0001 24.3 1.0 27 63-89 4-31 (116)
350 COG1004 Ugd Predicted UDP-gluc 60.4 6.4 0.00014 30.3 1.9 31 57-89 2-33 (414)
351 PF06690 DUF1188: Protein of u 60.0 17 0.00037 26.2 3.8 42 46-89 33-74 (252)
352 TIGR02622 CDP_4_6_dhtase CDP-g 59.8 15 0.00033 26.4 3.7 33 55-88 4-37 (349)
353 cd08255 2-desacetyl-2-hydroxye 59.5 28 0.00061 23.8 4.9 38 50-88 93-131 (277)
354 PF12692 Methyltransf_17: S-ad 58.9 53 0.0012 22.1 6.1 42 45-87 17-60 (160)
355 COG0742 N6-adenine-specific me 58.8 42 0.00092 23.1 5.5 47 41-89 29-76 (187)
356 KOG1209 1-Acyl dihydroxyaceton 58.7 13 0.00028 26.9 3.0 34 53-86 5-39 (289)
357 TIGR00561 pntA NAD(P) transhyd 58.6 18 0.00039 28.5 4.1 35 53-89 162-197 (511)
358 cd01065 NAD_bind_Shikimate_DH 58.6 15 0.00033 23.0 3.2 34 53-88 17-52 (155)
359 PRK06753 hypothetical protein; 58.4 19 0.00041 26.0 4.0 32 57-89 2-33 (373)
360 PRK04663 murD UDP-N-acetylmura 58.2 22 0.00047 26.8 4.4 35 55-89 7-42 (438)
361 cd08285 NADP_ADH NADP(H)-depen 57.9 28 0.00061 24.9 4.8 38 50-88 162-200 (351)
362 COG5008 PilU Tfp pilus assembl 57.8 19 0.00041 26.9 3.8 42 45-86 118-163 (375)
363 TIGR03385 CoA_CoA_reduc CoA-di 57.8 43 0.00093 24.9 5.9 45 43-89 125-170 (427)
364 PF00732 GMC_oxred_N: GMC oxid 57.4 22 0.00048 24.8 4.1 31 58-88 3-33 (296)
365 PF00205 TPP_enzyme_M: Thiamin 57.2 33 0.00072 21.3 4.6 37 53-89 76-113 (137)
366 COG4427 Uncharacterized protei 57.1 16 0.00034 27.1 3.3 25 44-68 130-154 (350)
367 PLN02852 ferredoxin-NADP+ redu 57.1 23 0.00051 27.6 4.5 36 54-89 25-61 (491)
368 PRK06475 salicylate hydroxylas 57.0 18 0.00039 26.7 3.7 33 56-89 3-35 (400)
369 COG4262 Predicted spermidine s 56.8 21 0.00045 27.7 4.0 37 52-89 287-323 (508)
370 PRK15431 ferrous iron transpor 56.7 29 0.00062 20.6 3.9 52 3-66 6-59 (78)
371 KOG1709 Guanidinoacetate methy 56.2 56 0.0012 23.6 5.9 25 53-77 100-124 (271)
372 PRK00421 murC UDP-N-acetylmura 56.1 17 0.00037 27.5 3.6 36 52-89 4-41 (461)
373 PLN02172 flavin-containing mon 56.0 18 0.00039 27.8 3.7 35 53-89 8-43 (461)
374 PRK07208 hypothetical protein; 55.9 15 0.00032 27.7 3.2 35 53-89 2-37 (479)
375 PRK06179 short chain dehydroge 55.8 19 0.0004 24.7 3.5 34 54-88 3-37 (270)
376 PRK09880 L-idonate 5-dehydroge 55.3 23 0.00051 25.4 4.0 35 54-89 169-204 (343)
377 KOG4405 GDP dissociation inhib 54.9 19 0.00042 28.3 3.6 33 57-90 10-42 (547)
378 TIGR02825 B4_12hDH leukotriene 54.9 34 0.00074 24.1 4.8 37 50-88 134-172 (325)
379 TIGR03451 mycoS_dep_FDH mycoth 54.8 29 0.00064 25.0 4.5 37 52-89 174-211 (358)
380 PRK12837 3-ketosteroid-delta-1 54.7 19 0.00042 27.8 3.7 31 57-89 9-39 (513)
381 TIGR01988 Ubi-OHases Ubiquinon 54.5 25 0.00054 25.2 4.1 31 58-89 2-32 (385)
382 PRK15182 Vi polysaccharide bio 53.9 21 0.00045 27.3 3.7 34 54-89 5-38 (425)
383 PRK12831 putative oxidoreducta 53.8 30 0.00064 26.5 4.5 33 54-88 139-172 (464)
384 PRK04965 NADH:flavorubredoxin 53.8 18 0.00039 26.4 3.3 32 56-89 3-37 (377)
385 smart00489 DEXDc3 DEAD-like he 53.6 36 0.00077 24.5 4.7 39 38-76 9-49 (289)
386 smart00488 DEXDc2 DEAD-like he 53.6 36 0.00077 24.5 4.7 39 38-76 9-49 (289)
387 PRK15116 sulfur acceptor prote 53.6 34 0.00073 24.7 4.6 37 51-89 26-64 (268)
388 PRK08223 hypothetical protein; 53.5 28 0.0006 25.5 4.1 38 51-89 23-61 (287)
389 KOG1269 SAM-dependent methyltr 53.4 6.2 0.00014 29.7 0.8 38 51-90 107-144 (364)
390 PRK05428 HPr kinase/phosphoryl 53.4 76 0.0016 23.5 6.4 64 22-86 96-177 (308)
391 TIGR03219 salicylate_mono sali 53.3 22 0.00049 26.2 3.7 32 57-89 2-34 (414)
392 cd08278 benzyl_alcohol_DH Benz 53.2 29 0.00063 25.2 4.3 37 51-88 183-220 (365)
393 PLN02927 antheraxanthin epoxid 53.1 21 0.00046 29.0 3.8 35 53-88 79-113 (668)
394 cd08238 sorbose_phosphate_red 52.6 22 0.00047 26.4 3.6 37 53-89 174-213 (410)
395 KOG1298 Squalene monooxygenase 52.2 27 0.0006 27.3 4.0 37 51-88 41-77 (509)
396 PRK06912 acoL dihydrolipoamide 51.8 26 0.00056 26.5 3.9 31 57-89 2-33 (458)
397 TIGR02032 GG-red-SF geranylger 51.5 29 0.00064 23.6 3.9 32 57-89 2-33 (295)
398 PF12447 DUF3683: Protein of u 51.4 17 0.00036 23.2 2.4 23 65-90 41-63 (115)
399 TIGR03366 HpnZ_proposed putati 51.4 30 0.00065 24.1 4.0 36 53-89 119-155 (280)
400 cd08261 Zn_ADH7 Alcohol dehydr 51.4 45 0.00097 23.6 4.9 36 50-87 155-191 (337)
401 PTZ00117 malate dehydrogenase; 51.3 39 0.00085 24.6 4.7 36 53-89 3-39 (319)
402 TIGR01202 bchC 2-desacetyl-2-h 51.3 25 0.00055 24.9 3.6 35 53-88 143-178 (308)
403 PLN02268 probable polyamine ox 51.3 23 0.0005 26.3 3.5 31 57-89 2-33 (435)
404 KOG3851 Sulfide:quinone oxidor 51.1 23 0.00051 27.1 3.5 35 54-89 38-74 (446)
405 PRK07904 short chain dehydroge 51.1 24 0.00053 24.2 3.5 36 53-89 6-43 (253)
406 PRK07538 hypothetical protein; 51.1 27 0.00058 25.9 3.8 32 57-89 2-33 (413)
407 PRK12845 3-ketosteroid-delta-1 50.9 25 0.00055 27.7 3.9 31 57-89 18-48 (564)
408 PF00996 GDI: GDP dissociation 50.9 19 0.00041 27.8 3.1 32 58-90 7-38 (438)
409 cd05278 FDH_like Formaldehyde 50.8 30 0.00065 24.4 4.0 38 50-88 163-201 (347)
410 PRK08275 putative oxidoreducta 50.7 28 0.00061 27.2 4.0 33 57-89 11-44 (554)
411 cd08281 liver_ADH_like1 Zinc-d 50.7 29 0.00064 25.2 4.0 37 52-89 189-226 (371)
412 KOG0821 Predicted ribosomal RN 50.5 17 0.00037 26.4 2.6 34 54-89 50-83 (326)
413 cd08300 alcohol_DH_class_III c 50.5 36 0.00078 24.7 4.4 38 51-89 183-221 (368)
414 PLN02989 cinnamyl-alcohol dehy 50.5 27 0.00058 24.7 3.7 33 55-88 5-38 (325)
415 cd05286 QOR2 Quinone oxidoredu 50.4 37 0.0008 23.1 4.3 37 50-88 132-170 (320)
416 PRK00258 aroE shikimate 5-dehy 50.4 21 0.00046 25.3 3.1 46 41-88 105-156 (278)
417 PRK08762 molybdopterin biosynt 50.3 32 0.0007 25.6 4.2 35 53-88 133-168 (376)
418 TIGR01369 CPSaseII_lrg carbamo 50.3 19 0.00041 30.6 3.2 37 53-89 4-50 (1050)
419 PRK00098 GTPase RsgA; Reviewed 50.2 32 0.0007 24.7 4.1 47 26-72 135-182 (298)
420 PF13738 Pyr_redox_3: Pyridine 50.0 43 0.00094 21.7 4.4 34 53-88 165-199 (203)
421 PRK11524 putative methyltransf 49.7 52 0.0011 23.4 5.1 44 43-89 195-240 (284)
422 PRK07774 short chain dehydroge 49.5 27 0.00058 23.4 3.4 34 54-88 5-39 (250)
423 PLN02662 cinnamyl-alcohol dehy 49.4 28 0.0006 24.4 3.6 33 55-88 4-37 (322)
424 cd01080 NAD_bind_m-THF_DH_Cycl 49.2 57 0.0012 21.7 4.9 35 52-88 41-77 (168)
425 PRK13699 putative methylase; P 49.0 58 0.0013 22.6 5.1 44 43-89 150-195 (227)
426 COG1249 Lpd Pyruvate/2-oxoglut 49.0 24 0.00052 27.3 3.4 35 53-89 171-206 (454)
427 PLN02166 dTDP-glucose 4,6-dehy 49.0 27 0.00059 26.6 3.7 33 54-87 119-152 (436)
428 cd08277 liver_alcohol_DH_like 48.8 35 0.00075 24.8 4.1 37 51-88 181-218 (365)
429 TIGR03452 mycothione_red mycot 48.7 26 0.00056 26.6 3.5 34 54-89 168-202 (452)
430 cd08243 quinone_oxidoreductase 48.7 41 0.00089 23.1 4.3 36 51-88 139-176 (320)
431 PRK05868 hypothetical protein; 48.7 29 0.00062 25.5 3.7 33 56-89 2-34 (372)
432 PLN02740 Alcohol dehydrogenase 48.6 35 0.00076 25.0 4.1 39 50-89 194-233 (381)
433 cd08295 double_bond_reductase_ 48.6 42 0.00091 23.9 4.4 37 50-88 147-185 (338)
434 cd00315 Cyt_C5_DNA_methylase C 48.5 29 0.00063 24.7 3.6 31 57-89 2-32 (275)
435 cd08301 alcohol_DH_plants Plan 48.3 37 0.00081 24.5 4.2 39 50-89 183-222 (369)
436 PRK12767 carbamoyl phosphate s 48.0 42 0.0009 23.8 4.3 34 56-89 2-35 (326)
437 PRK06175 L-aspartate oxidase; 47.9 31 0.00067 26.1 3.8 31 57-89 6-36 (433)
438 PRK01438 murD UDP-N-acetylmura 47.8 30 0.00065 26.3 3.7 34 53-88 14-48 (480)
439 PRK12829 short chain dehydroge 47.8 50 0.0011 22.2 4.6 37 51-88 7-44 (264)
440 TIGR02354 thiF_fam2 thiamine b 47.6 49 0.0011 22.5 4.4 39 50-88 16-54 (200)
441 PRK09126 hypothetical protein; 47.5 31 0.00067 25.0 3.7 33 56-89 4-36 (392)
442 PRK06115 dihydrolipoamide dehy 47.3 29 0.00063 26.4 3.6 34 53-88 172-206 (466)
443 PRK05945 sdhA succinate dehydr 47.2 30 0.00065 27.2 3.7 32 57-88 5-37 (575)
444 PRK14851 hypothetical protein; 47.0 35 0.00077 27.8 4.2 36 52-88 40-76 (679)
445 PRK05537 bifunctional sulfate 47.0 61 0.0013 25.8 5.4 67 22-88 356-430 (568)
446 PLN02657 3,8-divinyl protochlo 46.9 27 0.00058 26.0 3.3 35 53-88 58-93 (390)
447 cd08237 ribitol-5-phosphate_DH 46.9 34 0.00073 24.7 3.7 36 53-89 162-199 (341)
448 PLN02240 UDP-glucose 4-epimera 46.8 31 0.00067 24.6 3.5 31 55-86 5-36 (352)
449 TIGR00562 proto_IX_ox protopor 46.6 44 0.00095 24.9 4.4 34 56-89 3-39 (462)
450 PF07992 Pyr_redox_2: Pyridine 46.5 37 0.0008 21.9 3.6 32 57-89 1-32 (201)
451 cd01488 Uba3_RUB Ubiquitin act 46.4 35 0.00075 24.9 3.7 31 57-88 1-32 (291)
452 PRK06223 malate dehydrogenase; 46.3 46 0.001 23.7 4.4 33 56-89 3-36 (307)
453 PLN00016 RNA-binding protein; 46.3 19 0.00041 26.4 2.4 39 50-88 47-89 (378)
454 PRK05476 S-adenosyl-L-homocyst 46.3 43 0.00094 25.8 4.4 34 54-89 211-245 (425)
455 KOG3987 Uncharacterized conser 46.3 12 0.00026 26.9 1.3 22 54-75 112-133 (288)
456 PRK07494 2-octaprenyl-6-methox 46.1 43 0.00094 24.3 4.3 34 55-89 7-40 (388)
457 PF12147 Methyltransf_20: Puta 45.9 67 0.0015 23.9 5.1 38 52-89 133-171 (311)
458 PRK12416 protoporphyrinogen ox 45.9 29 0.00063 26.1 3.4 32 56-89 2-40 (463)
459 TIGR02822 adh_fam_2 zinc-bindi 45.8 58 0.0013 23.3 4.8 37 51-89 162-199 (329)
460 cd08293 PTGR2 Prostaglandin re 45.7 55 0.0012 23.2 4.7 32 56-88 156-189 (345)
461 TIGR02356 adenyl_thiF thiazole 45.6 45 0.00096 22.6 4.0 37 51-88 17-54 (202)
462 PF12831 FAD_oxidored: FAD dep 45.5 28 0.0006 26.3 3.2 32 58-90 2-33 (428)
463 PRK07588 hypothetical protein; 45.4 35 0.00077 24.9 3.7 32 57-89 2-33 (391)
464 PRK05714 2-octaprenyl-3-methyl 45.3 38 0.00082 24.8 3.9 32 57-89 4-35 (405)
465 PRK04690 murD UDP-N-acetylmura 45.3 49 0.0011 25.4 4.6 33 54-88 7-40 (468)
466 PF08149 BING4CT: BING4CT (NUC 45.3 4 8.6E-05 24.5 -1.1 33 56-90 21-53 (80)
467 PRK12384 sorbitol-6-phosphate 45.3 32 0.0007 23.3 3.3 32 56-88 3-35 (259)
468 PRK09564 coenzyme A disulfide 45.3 76 0.0017 23.6 5.5 35 52-88 146-181 (444)
469 PRK08264 short chain dehydroge 45.3 32 0.0007 22.9 3.3 34 54-88 5-40 (238)
470 PRK06057 short chain dehydroge 45.2 43 0.00092 22.7 3.9 35 53-88 5-40 (255)
471 cd01075 NAD_bind_Leu_Phe_Val_D 45.1 74 0.0016 21.5 5.0 35 53-89 26-61 (200)
472 PRK09496 trkA potassium transp 45.0 32 0.00068 25.7 3.4 34 54-89 230-264 (453)
473 PLN02494 adenosylhomocysteinas 44.8 74 0.0016 25.1 5.5 42 46-89 241-287 (477)
474 PRK00066 ldh L-lactate dehydro 44.8 60 0.0013 23.7 4.8 37 53-89 4-41 (315)
475 PRK14045 1-aminocyclopropane-1 44.8 87 0.0019 22.8 5.6 32 57-88 186-220 (329)
476 PLN02827 Alcohol dehydrogenase 44.8 47 0.001 24.4 4.3 37 51-88 190-227 (378)
477 TIGR00789 flhB_rel flhB C-term 44.5 52 0.0011 19.5 3.7 30 17-47 25-54 (82)
478 TIGR01984 UbiH 2-polyprenyl-6- 44.5 43 0.00094 24.2 4.0 31 58-89 2-33 (382)
479 PRK07364 2-octaprenyl-6-methox 44.5 47 0.001 24.3 4.3 34 55-89 18-51 (415)
480 COG1199 DinG Rad3-related DNA 44.5 50 0.0011 26.2 4.6 45 33-77 11-57 (654)
481 PRK09231 fumarate reductase fl 44.4 35 0.00076 27.0 3.7 32 57-88 6-38 (582)
482 PRK07045 putative monooxygenas 44.3 40 0.00086 24.6 3.8 34 55-89 5-38 (388)
483 cd01484 E1-2_like Ubiquitin ac 44.3 42 0.00092 23.6 3.8 31 57-88 1-32 (234)
484 PRK12815 carB carbamoyl phosph 44.2 28 0.0006 29.7 3.3 37 53-89 5-51 (1068)
485 TIGR02360 pbenz_hydroxyl 4-hyd 44.2 39 0.00085 24.9 3.8 33 56-89 3-35 (390)
486 COG0569 TrkA K+ transport syst 44.2 29 0.00064 24.0 3.0 32 56-89 1-33 (225)
487 PRK08125 bifunctional UDP-gluc 44.0 41 0.00088 26.9 4.1 36 52-88 312-349 (660)
488 TIGR02733 desat_CrtD C-3',4' d 43.9 43 0.00092 25.4 4.1 33 56-89 2-34 (492)
489 cd06454 KBL_like KBL_like; thi 43.9 1.1E+02 0.0024 21.5 8.1 70 15-84 15-90 (349)
490 KOG2352 Predicted spermine/spe 43.8 14 0.00031 29.0 1.4 36 53-89 294-329 (482)
491 PRK08020 ubiF 2-octaprenyl-3-m 43.6 43 0.00094 24.3 3.9 32 56-88 6-37 (391)
492 cd08244 MDR_enoyl_red Possible 43.4 83 0.0018 21.8 5.2 37 50-88 138-176 (324)
493 PRK05976 dihydrolipoamide dehy 43.3 35 0.00076 25.9 3.5 34 55-90 180-214 (472)
494 TIGR01350 lipoamide_DH dihydro 43.3 35 0.00076 25.6 3.5 34 54-89 169-203 (461)
495 PRK04965 NADH:flavorubredoxin 43.2 78 0.0017 23.1 5.2 35 53-89 139-174 (377)
496 KOG1198 Zinc-binding oxidoredu 43.2 49 0.0011 24.6 4.2 34 51-85 154-189 (347)
497 KOG2940 Predicted methyltransf 43.1 24 0.00052 25.8 2.4 33 54-88 72-104 (325)
498 PLN02735 carbamoyl-phosphate s 43.0 27 0.0006 30.0 3.1 36 54-89 22-67 (1102)
499 PRK07251 pyridine nucleotide-d 43.0 36 0.00079 25.4 3.5 35 53-89 155-190 (438)
500 COG0031 CysK Cysteine synthase 43.0 92 0.002 23.0 5.5 47 16-85 243-289 (300)
No 1
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.90 E-value=3.3e-23 Score=146.35 Aligned_cols=88 Identities=70% Similarity=1.017 Sum_probs=82.8
Q ss_pred hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836 2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK 81 (90)
Q Consensus 2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~ 81 (90)
+++++|+.+++..+++++.++++++.+.++++|.|.++|++|+||.++++..+|++||||||++||||+|||++++++|+
T Consensus 27 ~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~ 106 (247)
T PLN02589 27 DALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGK 106 (247)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCE
Confidence 47899998876657889999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEEecCC
Q 044836 82 VQWMNTNL 89 (90)
Q Consensus 82 v~~ie~~~ 89 (90)
|+|+|.++
T Consensus 107 v~tiE~~~ 114 (247)
T PLN02589 107 ILAMDINR 114 (247)
T ss_pred EEEEeCCH
Confidence 99999986
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.87 E-value=3.8e-22 Score=137.62 Aligned_cols=78 Identities=44% Similarity=0.658 Sum_probs=71.5
Q ss_pred hhcCCCCChHHHHHHHHHHHhC-CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 10 ETTVYPREHECLKELRELTEKH-PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 10 ~~~~~~~~~~~l~~l~~~a~~~-~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+|++ .+++.++++++++.++ ++|.|.++|++|+||.++++..+|++||||||++||||+|||+++|++|+|+|+|+|
T Consensus 2 ~~s~--~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~ 79 (205)
T PF01596_consen 2 EHSV--REPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID 79 (205)
T ss_dssp HTCT--CSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS
T ss_pred CCCc--CCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCc
Confidence 4564 6899999999999865 488899999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 044836 89 L 89 (90)
Q Consensus 89 ~ 89 (90)
+
T Consensus 80 ~ 80 (205)
T PF01596_consen 80 P 80 (205)
T ss_dssp H
T ss_pred H
Confidence 6
No 3
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=135.89 Aligned_cols=85 Identities=28% Similarity=0.457 Sum_probs=77.3
Q ss_pred hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836 2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK 81 (90)
Q Consensus 2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~ 81 (90)
+.+.+|++++.. +.++..++++++++++++.|++. |++|+||.++++..+|++||||||++||||+|||.++|++|+
T Consensus 10 ~~l~~y~~~~~~-~~~~~~~~~~~e~a~~~~~pi~~--~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~ 86 (219)
T COG4122 10 EDLYDYLEALIP-GEPPALLAELEEFARENGVPIID--PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGR 86 (219)
T ss_pred HHHHHHHHhhcc-cCCchHHHHHHHHhHhcCCCCCC--hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCe
Confidence 468899998773 23778889999999999999655 999999999999999999999999999999999999999999
Q ss_pred EEEEecCC
Q 044836 82 VQWMNTNL 89 (90)
Q Consensus 82 v~~ie~~~ 89 (90)
|||||+|+
T Consensus 87 l~tiE~~~ 94 (219)
T COG4122 87 LTTIERDE 94 (219)
T ss_pred EEEEeCCH
Confidence 99999986
No 4
>PLN02476 O-methyltransferase
Probab=99.86 E-value=4.1e-21 Score=137.67 Aligned_cols=85 Identities=38% Similarity=0.624 Sum_probs=79.3
Q ss_pred hhHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCE
Q 044836 2 INISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGK 81 (90)
Q Consensus 2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~ 81 (90)
+.+++|+.++. ++++.++++++++.+++.+.|.++|++++||.++++..+|++||||||++||||+|+|++++++|+
T Consensus 69 ~~i~~Y~~~~~---~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~ 145 (278)
T PLN02476 69 PRLYDYVLSNV---REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGC 145 (278)
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCE
Confidence 57899999753 588999999999999878888999999999999999999999999999999999999999998999
Q ss_pred EEEEecCC
Q 044836 82 VQWMNTNL 89 (90)
Q Consensus 82 v~~ie~~~ 89 (90)
|+|+|.++
T Consensus 146 V~TiE~d~ 153 (278)
T PLN02476 146 LVACERDS 153 (278)
T ss_pred EEEEECCH
Confidence 99999986
No 5
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=3.5e-21 Score=134.36 Aligned_cols=88 Identities=55% Similarity=0.841 Sum_probs=81.3
Q ss_pred hHHHHHHhhcCCCCChHHHHHHHHHHHhCC--CccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC
Q 044836 3 NISQYILETTVYPREHECLKELRELTEKHP--QNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG 80 (90)
Q Consensus 3 ~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~--~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~ 80 (90)
..++|+.+++..+++++.++++++.|..++ ...|.++|++++|+.+++++.+|+++||||++||||++.+|.++|++|
T Consensus 20 ~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dG 99 (237)
T KOG1663|consen 20 RLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDG 99 (237)
T ss_pred hhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCc
Confidence 467888888777899999999999998774 557999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 044836 81 KVQWMNTNLY 90 (90)
Q Consensus 81 ~v~~ie~~~~ 90 (90)
+|+|+|+|++
T Consensus 100 rv~a~eid~~ 109 (237)
T KOG1663|consen 100 RVVAIEIDAD 109 (237)
T ss_pred eEEEEecChH
Confidence 9999999874
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.85 E-value=9e-21 Score=132.57 Aligned_cols=88 Identities=56% Similarity=0.845 Sum_probs=80.1
Q ss_pred hhHHHHHHhhcCCCCChHHHHHHHHHHHhC--CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCC
Q 044836 2 INISQYILETTVYPREHECLKELRELTEKH--PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDD 79 (90)
Q Consensus 2 ~~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~--~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~ 79 (90)
+.+++|+.+++.++++++.++++++++.++ +.|.|.+++++++||.++++..++++|||||||+|||++|+|++++++
T Consensus 14 ~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~ 93 (234)
T PLN02781 14 EALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPED 93 (234)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCC
Confidence 468999988764467899999999999876 457888999999999999999999999999999999999999999988
Q ss_pred CEEEEEecCC
Q 044836 80 GKVQWMNTNL 89 (90)
Q Consensus 80 ~~v~~ie~~~ 89 (90)
|+|+++|+++
T Consensus 94 g~v~tiD~d~ 103 (234)
T PLN02781 94 GRITAIDIDK 103 (234)
T ss_pred CEEEEEECCH
Confidence 9999999986
No 7
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.4e-10 Score=80.40 Aligned_cols=72 Identities=26% Similarity=0.301 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHh-CCCc----cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 15 PREHECLKELRELTEK-HPQN----FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 15 ~~~~~~l~~l~~~a~~-~~~p----~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|++.++.+.++..|+. ..+| .-.+.|.....+..++...+..+|||||||+||.|..||+.. ++|+++|+++
T Consensus 28 PRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~ 104 (209)
T COG2518 28 PRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIE 104 (209)
T ss_pred CHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcH
Confidence 5666666666666653 3333 234567777777777899999999999999999999999985 4999999864
No 8
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=2.2e-10 Score=78.86 Aligned_cols=53 Identities=28% Similarity=0.327 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.|.....+...+...++.+|||||||+||.+..+++.++.+++|+++|+++
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~ 111 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP 111 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH
Confidence 35666666666667788899999999999999999999988789999999985
No 9
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.04 E-value=1.1e-09 Score=75.86 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHhCCC--------------c----cccCCHHHHHHHHHHHHhcCCCeEEEEcccc
Q 044836 4 ISQYILETTVYPREHECLKELRELTEKHPQ--------------N----FMFSAPDEAQFLSMLLKLINAKNTMEIGVYT 65 (90)
Q Consensus 4 ~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~--------------p----~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~ 65 (90)
+.+.+.++.. -..+.+++.++..-++.-+ | ...+.|..-..+-.++.+.+..+|||||||+
T Consensus 5 lv~~l~~~g~-v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGs 83 (209)
T PF01135_consen 5 LVDNLIRPGD-VTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGTGS 83 (209)
T ss_dssp HHHHHHHTTS-S-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-TT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 4444444442 2456677777655443221 1 2235565555555556788999999999999
Q ss_pred cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 66 GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 66 G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
||.|..+|..+++.++|+++|+++
T Consensus 84 GY~aAlla~lvg~~g~Vv~vE~~~ 107 (209)
T PF01135_consen 84 GYQAALLAHLVGPVGRVVSVERDP 107 (209)
T ss_dssp SHHHHHHHHHHSTTEEEEEEESBH
T ss_pred cHHHHHHHHhcCccceEEEECccH
Confidence 999999999998889999999875
No 10
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.99 E-value=1.5e-09 Score=74.62 Aligned_cols=52 Identities=31% Similarity=0.381 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.|...+.+..++...+..+|||||||+|+.++.+++..+.+++|+++|+++
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~ 112 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP 112 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH
Confidence 3455544555556777889999999999999999999988789999999875
No 11
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.99 E-value=2.4e-10 Score=78.13 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 16 REHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 16 ~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+....+.++++.+...++| .+++.+..++..+.. ++.+|||||||+|..+..+++..| +++|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~ 74 (202)
T PRK00121 6 RRRGRLTKGQQRAIEELWP--RLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHE 74 (202)
T ss_pred hhccccccchhhhhcccch--hhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEech
Confidence 3455678888999989999 456778888888777 788999999999999999999877 68999999986
No 12
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=7.9e-10 Score=75.66 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|.....+..++...+..+|||||||+|+.+..+++.+++.++|+++|+++
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~ 107 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK 107 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH
Confidence 43333333334455667999999999999999999988778999999985
No 13
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.88 E-value=1.3e-08 Score=69.56 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=56.4
Q ss_pred hHHHHHHhhcCCCCChHHHHHHHHHHHhCC--------------Cc----cccCCHHHHHHHHHHHHhcCCCeEEEEccc
Q 044836 3 NISQYILETTVYPREHECLKELRELTEKHP--------------QN----FMFSAPDEAQFLSMLLKLINAKNTMEIGVY 64 (90)
Q Consensus 3 ~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~--------------~p----~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~ 64 (90)
++.+++..... ..+.+++.++...++.- +| ...+.|.....+..+++..+..+|||||||
T Consensus 11 ~~v~~l~~~~~--~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~G 88 (212)
T PRK00312 11 RLVLRLRAEGI--LDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTG 88 (212)
T ss_pred HHHHHHHHcCC--CCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 34455554442 45566666655444322 22 124567777777777777888999999999
Q ss_pred ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 65 TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 65 ~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|+.+..+++.. ++++++|+++
T Consensus 89 sG~~t~~la~~~---~~v~~vd~~~ 110 (212)
T PRK00312 89 SGYQAAVLAHLV---RRVFSVERIK 110 (212)
T ss_pred ccHHHHHHHHHh---CEEEEEeCCH
Confidence 999999988864 4899999874
No 14
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.75 E-value=2.8e-08 Score=67.21 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=45.2
Q ss_pred hCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 30 KHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 30 ~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+.| ...++...++...+...+..+|||+|||+|+.++++++..+ +++|+++|+++
T Consensus 18 ~~~~p--~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~ 74 (196)
T PRK07402 18 LPGIP--LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDE 74 (196)
T ss_pred CCCCC--CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCH
Confidence 35666 34466666666666767788999999999999999998766 68999999985
No 15
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.68 E-value=7.2e-08 Score=64.70 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+....++...+...++.+|||||||+|+.++.+++..+ +++|+++|+++
T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~ 65 (187)
T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNP 65 (187)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCH
Confidence 344444444445666889999999999999999999876 78999999985
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.68 E-value=2.9e-08 Score=60.79 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..+|||||||+|..++++++..+ +++|+++|+++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~ 35 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISP 35 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCH
Confidence 467999999999999999999656 89999999986
No 17
>PLN03075 nicotianamine synthase; Provisional
Probab=98.58 E-value=1.2e-07 Score=68.82 Aligned_cols=51 Identities=12% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++-++++|..+... +|++|+||||| .|++++++++...++++++++|+|+
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~ 159 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP 159 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH
Confidence 346778888887776 99999999999 7799999998776699999999986
No 18
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.57 E-value=1.7e-07 Score=64.37 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+..++.+|||||||+|+.+..+++.++ +++++++|+++
T Consensus 37 ~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~ 77 (204)
T TIGR03587 37 ALNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINE 77 (204)
T ss_pred HHHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCH
Confidence 334456778999999999999999999877 78999999986
No 19
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.56 E-value=4.4e-07 Score=61.32 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=33.0
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++++|||||||+|+.++.++...+ +++|+++|.++
T Consensus 39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~ 76 (181)
T TIGR00138 39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNH 76 (181)
T ss_pred HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcH
Confidence 345689999999999999999997665 78999999985
No 20
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.55 E-value=2.2e-07 Score=61.84 Aligned_cols=44 Identities=25% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|...+...+.++|||+|||+|+.++++++..+ +.+|+++|+|+
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~ 65 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINP 65 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBH
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCH
Confidence 454445555899999999999999999999887 77899999985
No 21
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.4e-07 Score=67.84 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=42.7
Q ss_pred ccCCHHHHHHHHHHH-HhcC-CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 36 MFSAPDEAQFLSMLL-KLIN-AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 36 m~~~~~~~~ll~~l~-~~~~-~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+.|++..++..+. .... +++|||||||||+.++.+|+..+ +.+|+++|+|+
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~ 144 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISP 144 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCH
Confidence 356778888888744 2222 22799999999999999999998 79999999986
No 22
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8.1e-08 Score=68.37 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++|.+.++. .+.+.++.+|||.|||+|..|++||.++++.|+|++.|+.+
T Consensus 78 IyPKD~~~I~~-~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~ 129 (256)
T COG2519 78 IYPKDAGYIVA-RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE 129 (256)
T ss_pred ecCCCHHHHHH-HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH
Confidence 44567665554 48999999999999999999999999999899999999864
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.54 E-value=1.8e-07 Score=63.75 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+|||||||+|+.++++++..+ +++|+++|+++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~ 79 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLG 79 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcH
Confidence 478999999999999999999777 79999999985
No 24
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.54 E-value=1.1e-07 Score=67.52 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..++|.+ ++-+.+.+.++.+|||.|||+|..|.+|++++.+.|+|++.|..+
T Consensus 23 IiYpkD~~-~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~ 75 (247)
T PF08704_consen 23 IIYPKDIS-YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE 75 (247)
T ss_dssp ---HHHHH-HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH
T ss_pred eeeCchHH-HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH
Confidence 34556655 555558999999999999999999999999999899999999863
No 25
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.53 E-value=7.4e-07 Score=68.61 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=43.9
Q ss_pred cccCCHHHHHHHHHHHHhc---------------------------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 35 FMFSAPDEAQFLSMLLKLI---------------------------NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 35 ~m~~~~~~~~ll~~l~~~~---------------------------~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
++++.|++..++...+... ++.+|||||||+|+.++.+++..+ +++|+++|+
T Consensus 92 VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDi 170 (506)
T PRK01544 92 VLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELP-NANVIATDI 170 (506)
T ss_pred cccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCC-CCeEEEEEC
Confidence 4567788888887655321 346899999999999999999887 789999999
Q ss_pred CC
Q 044836 88 NL 89 (90)
Q Consensus 88 ~~ 89 (90)
|+
T Consensus 171 s~ 172 (506)
T PRK01544 171 SL 172 (506)
T ss_pred CH
Confidence 85
No 26
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.53 E-value=2.9e-07 Score=56.80 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=33.3
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...+.++|||||||+|..+..+++..+ +++|+++|+++
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~ 53 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNP 53 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCH
Confidence 344567999999999999999999988 58999999875
No 27
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.50 E-value=3.4e-07 Score=67.09 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+...+..+|||||||+|+.++.+++..+..++|+++|+++
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~ 115 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR 115 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH
Confidence 3456778999999999999999999887668999999875
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.48 E-value=2.8e-07 Score=59.86 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=31.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|||+|||+|..+..++..+.++++++++|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~ 38 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE 38 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH
Confidence 4678999999999999999997666689999999986
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.45 E-value=5.6e-07 Score=61.79 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=35.7
Q ss_pred HHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 49 LLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 49 l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+...++++|||||||+|..+..+++..+++++|+++|+++
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 34555678999999999999999999987788999999975
No 30
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.43 E-value=7.9e-07 Score=60.34 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=34.9
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
....+..+|||+|||+|..++.+++.++..++|+++|+++
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~ 75 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE 75 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 3456778999999999999999999887678999999975
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.42 E-value=6.6e-07 Score=64.23 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHH-h---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLK-L---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~-~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.|++..++...+. . .++.+|||+|||+|..++.+++..+ +++|+++|+|+
T Consensus 100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~ 155 (284)
T TIGR03533 100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISP 155 (284)
T ss_pred cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCH
Confidence 456677777776554 2 3467999999999999999999887 78999999985
No 32
>PRK04266 fibrillarin; Provisional
Probab=98.41 E-value=5.1e-07 Score=63.15 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHH--HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 42 EAQFLSML--LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 42 ~~~ll~~l--~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+|..+ +...+..+|||+|||+|+.++.+++.++ .|+|+++|+++
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~ 106 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAP 106 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCH
Confidence 34455544 5556788999999999999999999997 89999999985
No 33
>PRK04457 spermidine synthase; Provisional
Probab=98.38 E-value=1.1e-06 Score=62.48 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++..+....++++|||||||+|..+.++++..| +.+|+++|+|+
T Consensus 55 ~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp 100 (262)
T PRK04457 55 RAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINP 100 (262)
T ss_pred HHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCH
Confidence 33444444456789999999999999999999987 78999999986
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.38 E-value=6.3e-07 Score=62.62 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+...++++|||||||+|..+..+++..+ +++|+++|+++
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~ 65 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSP 65 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCH
Confidence 3446788999999999999999999887 78999999975
No 35
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.37 E-value=8.3e-07 Score=59.65 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=34.8
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
....+.++|||||||+|..+..+++.....++|+++|+++
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~ 67 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence 3346788999999999999999998886678999999986
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.37 E-value=6.8e-07 Score=60.73 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+...++.+|||+|||+|..++++|+. +.+|+++|+++
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~ 62 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNP 62 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCH
Confidence 3356667899999999999999999984 57999999975
No 37
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.37 E-value=9.8e-07 Score=61.27 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhh---CCCCCEEEEEecC
Q 044836 31 HPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALA---IPDDGKVQWMNTN 88 (90)
Q Consensus 31 ~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~---~~~~~~v~~ie~~ 88 (90)
.|.|++.. |..-..++.++...+|+.|+|+|++-|.|++++|+- ++..++|++||++
T Consensus 10 ~G~pi~q~-P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 10 LGRPIIQY-PQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp TTEEESS--HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred CCeehhcC-HHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 56776654 445568899999999999999999999999999864 4357999999995
No 38
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.36 E-value=1.1e-06 Score=60.62 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+..+|||||||+|..+..+++..++.++|+++|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 35677999999999999999999987778999999875
No 39
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.35 E-value=1e-06 Score=58.72 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+++ .+|...+...++++|||+|||+|+.+..+++.. .+|+++|+++
T Consensus 6 ~d~-~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~ 51 (179)
T TIGR00537 6 EDS-LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINP 51 (179)
T ss_pred ccH-HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCH
Confidence 444 566666777888999999999999999999863 3899999985
No 40
>PRK06202 hypothetical protein; Provisional
Probab=98.35 E-value=1.1e-06 Score=60.72 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~~ 89 (90)
.+++...+...++.+|||||||+|..+..+++..++ +.+|+++|+++
T Consensus 49 ~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~ 98 (232)
T PRK06202 49 RRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP 98 (232)
T ss_pred HHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 344444444567889999999999999999876532 46999999985
No 41
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.34 E-value=1.1e-06 Score=62.37 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=34.8
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+...++.+|||||||+|..+..+++..+++++|+++|+++
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~ 108 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS 108 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 4456778999999999999999999876678999999985
No 42
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.30 E-value=1.1e-06 Score=61.59 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=34.2
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+...++.+|||||||+|..+..+++..| +++|+++|+++
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~ 63 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSP 63 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCH
Confidence 3446788999999999999999999886 78999999975
No 43
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.29 E-value=2e-06 Score=61.50 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHHHHh---cCC-CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKL---INA-KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~---~~~-~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.|++..++...... .++ .+|||+|||+|+.++.++...+ +.+|+++|+++
T Consensus 93 iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~ 148 (284)
T TIGR00536 93 IPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISP 148 (284)
T ss_pred CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCH
Confidence 3566777777765432 233 6999999999999999999887 78999999985
No 44
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.27 E-value=1.4e-06 Score=61.20 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 47 SMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 47 ~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+....++.+|||+|||||-.+..+++.++++++|+++|+++
T Consensus 40 ~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~ 82 (233)
T PF01209_consen 40 IKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP 82 (233)
T ss_dssp HHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H
T ss_pred HhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH
Confidence 3335567888999999999999999999998889999999875
No 45
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.26 E-value=1.2e-05 Score=61.04 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...|++..++..+... .+..+|||||||+|..++.+++..+ +.+++++|+|+
T Consensus 233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~ 285 (423)
T PRK14966 233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISP 285 (423)
T ss_pred CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCH
Confidence 4566777777776543 4567999999999999999998877 78999999985
No 46
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.26 E-value=4.1e-06 Score=60.88 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.--|..+-+. .+.++|||+|||||..++..++ ++ ..+|+++|+||
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k-lG-A~~v~a~DiDp 194 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK-LG-AKKVVAIDIDP 194 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH-TT-BSEEEEEESSC
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEecCCH
Confidence 445555566555 4578999999999999998887 45 57899999997
No 47
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=2.4e-06 Score=61.98 Aligned_cols=54 Identities=11% Similarity=0.326 Sum_probs=46.1
Q ss_pred cccCCHHHHHHHHHHHHhc------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 35 FMFSAPDEAQFLSMLLKLI------NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 35 ~m~~~~~~~~ll~~l~~~~------~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++++.|++..++.+.+... ++..+||+|||+|..++.+++.+| .++++++|.++
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~ 182 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSK 182 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccH
Confidence 3567889999988877543 455799999999999999999999 89999999874
No 48
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.25 E-value=1.5e-06 Score=61.85 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=46.3
Q ss_pred cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++-| +-||..+++....++|||||||+|..++.+|+..+ +.+|++||+++
T Consensus 26 ~~~~~~D-aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~ 78 (248)
T COG4123 26 GFRYGTD-AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQE 78 (248)
T ss_pred ccccccH-HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCH
Confidence 4455555 66999999999999999999999999999999987 49999999875
No 49
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.24 E-value=2.9e-06 Score=58.56 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+++..++..+.... ++.+|||+|||+|..++.+++..+ +.+++++|+++
T Consensus 69 p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~ 121 (251)
T TIGR03534 69 PRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISP 121 (251)
T ss_pred CCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCH
Confidence 4456666666665543 456999999999999999999887 67999999875
No 50
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.24 E-value=1.9e-06 Score=58.66 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=31.4
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++.+|||+|||+|..+++||+. +.+|+++|+++
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~ 62 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNP 62 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCH
Confidence 4557899999999999999999985 57999999975
No 51
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.23 E-value=2.8e-06 Score=60.53 Aligned_cols=49 Identities=14% Similarity=-0.043 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++.....+...+...++.+|||||||+|..|..+++.. .+|+++|+|+
T Consensus 26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~ 74 (272)
T PRK00274 26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDR 74 (272)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCH
Confidence 455544444444556678899999999999999999984 4899999986
No 52
>PRK08317 hypothetical protein; Provisional
Probab=98.23 E-value=3.7e-06 Score=56.97 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=37.0
Q ss_pred HHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 46 LSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 46 l~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.......++.+|||+|||+|..+..++...++.++++++|+++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~ 54 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE 54 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH
Confidence 33445667788999999999999999999885578999999875
No 53
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.23 E-value=2.3e-06 Score=60.01 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.|++..++..+.. ..++.+|||+|||+|..++.++...+ ..+++++|+++
T Consensus 88 ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~ 142 (275)
T PRK09328 88 IPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISP 142 (275)
T ss_pred eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCH
Confidence 345566666666552 34677999999999999999999987 78999999875
No 54
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.22 E-value=3.2e-06 Score=61.42 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHH-h-c-C-CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLK-L-I-N-AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~-~-~-~-~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.|++..++...+. . . + +++|||+|||+|+.++.+++..| +.+|+++|+|+
T Consensus 112 ipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~ 167 (307)
T PRK11805 112 VPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISP 167 (307)
T ss_pred CCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCH
Confidence 356677777776543 2 2 2 37999999999999999999887 78999999985
No 55
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.20 E-value=3.9e-06 Score=59.31 Aligned_cols=50 Identities=14% Similarity=-0.004 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+++.....+...+...+.++|||||||+|..|..+++. ..+|+++|+|+
T Consensus 12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~ 61 (258)
T PRK14896 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDP 61 (258)
T ss_pred cCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCH
Confidence 356666666665566677889999999999999999987 46899999985
No 56
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.19 E-value=5.9e-06 Score=57.91 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=31.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIP-DDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~-~~~~v~~ie~~~ 89 (90)
.+..+|||||||+|..+..+++.+. ++++++++|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~ 92 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP 92 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH
Confidence 4677999999999999999998652 478999999975
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=98.18 E-value=5.1e-06 Score=54.86 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++...+...+.++|||+|||+|+.+..+++. +.+++++|+++
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~ 55 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP 55 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCH
Confidence 344444455578889999999999999999986 58999999875
No 58
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.17 E-value=3.8e-06 Score=59.44 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=34.3
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++.+|||||||||-.|+.+++..+ .|+|+++|+|+
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~ 85 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISE 85 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCH
Confidence 34789999999999999999999999 99999999985
No 59
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3.6e-06 Score=61.37 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=30.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++++|||+|||+|..+++.++ ++ ..+++++|+||
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k-LG-A~~v~g~DiDp 195 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK-LG-AKKVVGVDIDP 195 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH-cC-CceEEEecCCH
Confidence 4899999999999999998887 45 57899999986
No 60
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.16 E-value=7.6e-06 Score=56.06 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=41.7
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 32 PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 32 ~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.| | .-++.-.+.-..++..+..+++|||||||-.++-+|. ..+.+++++||.++
T Consensus 14 ~~p-~-TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~ 68 (187)
T COG2242 14 GGP-M-TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDE 68 (187)
T ss_pred CCC-C-cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCH
Confidence 456 2 2344444444556678899999999999999999994 45599999999875
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.16 E-value=2.7e-06 Score=57.66 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=32.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|||||||+|..+..+|+..| ++.++++|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~ 50 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHT 50 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeH
Confidence 4667999999999999999999987 78999999874
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.15 E-value=3.7e-06 Score=62.91 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+|||+|||+|..++++++..| +.+|+++|+|+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~ 262 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESP 262 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCH
Confidence 46999999999999999999987 78999999985
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.14 E-value=5.3e-06 Score=58.54 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+-..++.+|.|+|||+|-||-.|++..| ++.|++||.|+
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~ 64 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSP 64 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCH
Confidence 5667899999999999999999999999 89999999875
No 64
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.14 E-value=5.5e-06 Score=56.27 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=31.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++++|||||||+|..+..+++..+ ..+++++|+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~ 68 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISA 68 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChH
Confidence 4567999999999999999999887 78899999875
No 65
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.14 E-value=7.1e-06 Score=57.66 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHHHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+...+..+.+ ..++++|||||||+|+.++.+++. + ..+|+++|+|+
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~ 152 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDP 152 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCH
Confidence 34445555544 357889999999999999987763 4 35799999986
No 66
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.14 E-value=3.9e-06 Score=63.42 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.....++..++...+.++|||+|||+|..++++++.++++++|+++|+++
T Consensus 236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~ 285 (444)
T PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE 285 (444)
T ss_pred ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCH
Confidence 34455666666677788999999999999999999986679999999975
No 67
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.12 E-value=6.7e-06 Score=62.22 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++++..++...++.+|||+|||+|..|+++++.+++.++|+++|+++
T Consensus 224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~ 272 (431)
T PRK14903 224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR 272 (431)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH
Confidence 4455666666777888999999999999999999998789999999975
No 68
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.11 E-value=5e-06 Score=62.91 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+...++...+.++|||+|||+|..|+++++.++..++|+++|+++
T Consensus 239 s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~ 285 (445)
T PRK14904 239 QALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP 285 (445)
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH
Confidence 33444445556778999999999999999999988778999999985
No 69
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.11 E-value=6.8e-06 Score=56.26 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=30.5
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+.++|||||||+|..+.+++.. +.+|+++|+++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~ 87 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISE 87 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCH
Confidence 456889999999999999999874 56999999985
No 70
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.10 E-value=6e-06 Score=57.92 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=30.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++.+|||||||+|..+.++++. +.+|+++|+++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~ 76 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSA 76 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCH
Confidence 45789999999999999999985 57999999985
No 71
>PRK05785 hypothetical protein; Provisional
Probab=98.10 E-value=8e-06 Score=56.82 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=34.0
Q ss_pred HHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++..+... .++.+|||||||||..+..+++.. +++|+++|+++
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~ 84 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAE 84 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCH
Confidence 44444432 357899999999999999999876 47999999875
No 72
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.10 E-value=6.2e-06 Score=59.02 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=31.3
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++.+|||||||+|..++++++. +.+|+++|+++
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~ 152 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQ 152 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCH
Confidence 4467789999999999999999984 57999999975
No 73
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.09 E-value=1.4e-05 Score=55.44 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIP-DDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~-~~~~v~~ie~~~ 89 (90)
+..+|||||||+|..+..+++.++ ++++++++|+++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~ 89 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ 89 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH
Confidence 567999999999999999999864 378999999975
No 74
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.09 E-value=1.1e-05 Score=57.02 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 39 APDEAQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+++..++....... ++.+|||+|||+|..++.+++..+ +.+|+++|+|+
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~ 120 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDP 120 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCH
Confidence 445555555544432 245899999999999999999877 67999999985
No 75
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.08 E-value=1.2e-05 Score=54.82 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHH--hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLK--LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~--~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++..+.. ..++.+|||||||+|..+..+++. ..+++++|+++
T Consensus 52 ~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~ 95 (230)
T PRK07580 52 VLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISP 95 (230)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCH
Confidence 4444433 356789999999999999999975 45799999874
No 76
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.06 E-value=1e-05 Score=57.38 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+...++...++.+|||+|||+|.-|+.+|+.+++.|+|+++|+++
T Consensus 60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~ 106 (264)
T TIGR00446 60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK 106 (264)
T ss_pred HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH
Confidence 33444455566778999999999999999999998778999999985
No 77
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.05 E-value=5.4e-06 Score=58.46 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
....+.++|||||||+|..++.+++..+..++|+++|+++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~ 112 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP 112 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH
Confidence 4456788999999999999999998887778999999875
No 78
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.04 E-value=1.1e-05 Score=56.28 Aligned_cols=36 Identities=8% Similarity=0.031 Sum_probs=29.9
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++.+|||||||+|..+..+++. +.+++++|+++
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~ 74 (251)
T PRK10258 39 PQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSP 74 (251)
T ss_pred CccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCH
Confidence 3345789999999999999888763 57999999975
No 79
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.04 E-value=1.6e-05 Score=50.84 Aligned_cols=44 Identities=30% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++..+.. ..+.++|||||||+|..+..++.. ..+++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~ 54 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISP 54 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCH
Confidence 445565554 678899999999999999999664 35999999974
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.04 E-value=1.5e-05 Score=57.14 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+...+..+.+. .++++|||+|||+|+.++.+++ .+ ..+|+++|+++
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~ 192 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDP 192 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCH
Confidence 333334444333 4678999999999999988886 44 56999999985
No 81
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.03 E-value=1.1e-05 Score=53.49 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=30.6
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+..+|||||||+|..+..+++. .++++++|+|+
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~ 45 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDP 45 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCH
Confidence 445679999999999999999987 47999999985
No 82
>PTZ00146 fibrillarin; Provisional
Probab=98.03 E-value=8.3e-06 Score=59.29 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=34.5
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+..+|||+|||+|+.+..+|..+++.++|+++|+++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~ 167 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH 167 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH
Confidence 45677999999999999999999998889999999874
No 83
>PLN02244 tocopherol O-methyltransferase
Probab=98.03 E-value=1.7e-05 Score=58.11 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=30.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++++|||||||+|..+..+++.. +++|+++|+++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~ 151 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSP 151 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCH
Confidence 456899999999999999999876 47999999985
No 84
>PRK04148 hypothetical protein; Provisional
Probab=98.02 E-value=1.6e-05 Score=51.91 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGY-SLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~-sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+|..-....+.++|||||||+|. .+..|++. +..|+++|+|+
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~ 49 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINE 49 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCH
Confidence 4444443344456899999999998 66666642 57999999986
No 85
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.02 E-value=1.2e-05 Score=60.72 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+++..++...+..+|||+|||+|..|+.+++.+++.|+|+++|+++
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~ 287 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA 287 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH
Confidence 44555555666778999999999999999999988779999999875
No 86
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.02 E-value=1.4e-05 Score=56.15 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+++...+-+...+...++.+|||||||+|..|..+++..+ +|+++|+|+
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~ 61 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDP 61 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCH
Confidence 4454444333334556788999999999999999998754 599999985
No 87
>PLN02672 methionine S-methyltransferase
Probab=98.01 E-value=1.5e-05 Score=66.26 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=41.4
Q ss_pred ccCCHHHHHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 36 MFSAPDEAQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 36 m~~~~~~~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+.|++-.++..+.... ++++|||+|||+|+.++.+++..+ .++|+++|+|+
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~ 152 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINP 152 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCH
Confidence 355667776766633321 346899999999999999999987 68999999986
No 88
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.01 E-value=1.5e-05 Score=53.81 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=33.6
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++.+|||+|||+|..+..+++..++.++++++|+++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~ 74 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS 74 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH
Confidence 34788999999999999999999988558999999874
No 89
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.00 E-value=1.6e-05 Score=59.79 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++..++...++.+|||+|||+|+.|+.+++.++ +++|+++|+++
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~ 272 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHE 272 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCH
Confidence 344555555666788999999999999999999998 89999999975
No 90
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.00 E-value=2.3e-06 Score=52.43 Aligned_cols=31 Identities=42% Similarity=0.627 Sum_probs=5.5
Q ss_pred EEEcccccHHHHHHHhhCCCCC--EEEEEecCC
Q 044836 59 MEIGVYTGYSLLVTALAIPDDG--KVQWMNTNL 89 (90)
Q Consensus 59 LEiGt~~G~sal~la~~~~~~~--~v~~ie~~~ 89 (90)
|||||+.|+||+++++++++++ +++++|..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~ 33 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP 33 (106)
T ss_dssp --------------------------EEEESS-
T ss_pred CccccccccccccccccccccccCCEEEEECCC
Confidence 7999999999999999999765 899999875
No 91
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.99 E-value=1.5e-05 Score=55.17 Aligned_cols=33 Identities=9% Similarity=-0.132 Sum_probs=29.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+||++|||.|..+++||+. +-.|+++|+++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~ 66 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSE 66 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCH
Confidence 5579999999999999999974 67999999986
No 92
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.99 E-value=1e-05 Score=55.31 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=29.8
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++|||||||+|..+..+++..+ +.+++++|+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~ 33 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISP 33 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCH
Confidence 5899999999999999999886 68999999875
No 93
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.98 E-value=2.4e-05 Score=53.23 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=33.4
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+..+|||||||+|..+..++...+++.+++++|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 86 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE 86 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence 34567999999999999999999987678999999875
No 94
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.4e-05 Score=58.33 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.-+--|+..|-..... +|||+|||.|+.++++|+..| ..+|+.+|+|.
T Consensus 144 D~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~ 192 (300)
T COG2813 144 DKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNA 192 (300)
T ss_pred ChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCH
Confidence 34445566665555555 999999999999999999998 89999999984
No 95
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.97 E-value=1.6e-05 Score=58.68 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++..+ ......+|||+|||+|..++.+++..| +.+|+++|+++
T Consensus 186 ~lLl~~l-~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~ 230 (342)
T PRK09489 186 QLLLSTL-TPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSA 230 (342)
T ss_pred HHHHHhc-cccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCH
Confidence 3344433 333456899999999999999999877 78999999984
No 96
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.97 E-value=8.2e-05 Score=52.74 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCC--CEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDD--GKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~--~~v~~ie~~~ 89 (90)
+..+|||||||+|+.+..+++.+++. ..++++|+++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~ 122 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK 122 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH
Confidence 45789999999999999999988743 4899999985
No 97
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.97 E-value=2.3e-05 Score=56.61 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHH-----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~-----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+..+|...++ ..++.+|||+|||+|.-|..++++++...+++++|+++
T Consensus 44 r~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 44 RTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 445566665444 23568999999999999999999987568999999985
No 98
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.96 E-value=3.3e-06 Score=50.89 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=26.4
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 59 MEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 59 LEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
||||||+|..+..+++..+ ..+++++|+|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~ 31 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPS 31 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSS
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHH
Confidence 7999999999999999996 899999999973
No 99
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.95 E-value=1.9e-05 Score=57.27 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+++.....+...+...+..+|||||||+|..|..+++. .++|+++|+|+
T Consensus 19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~ 68 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDP 68 (294)
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCH
Confidence 345555554444455567789999999999999999986 46899999985
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.94 E-value=1.7e-05 Score=59.73 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+...++...++.+|||+|||+|..|+.+++..+ +++|+++|+++
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~ 278 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDA 278 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCH
Confidence 33444455666788999999999999999999887 48999999985
No 101
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.93 E-value=1.8e-05 Score=57.87 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=29.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++++|||||||+|+.+..++..- ..+|+++|+++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~ 155 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQ 155 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCH
Confidence 467899999999999999999873 34799999874
No 102
>PRK06922 hypothetical protein; Provisional
Probab=97.92 E-value=2.3e-05 Score=62.32 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+...+....++.+|||||||+|..+..+++..| +++++++|+++
T Consensus 409 ~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~ 452 (677)
T PRK06922 409 DKRIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISE 452 (677)
T ss_pred HHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCH
Confidence 334455666889999999999999999999887 89999999985
No 103
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=1.8e-05 Score=54.50 Aligned_cols=38 Identities=21% Similarity=0.067 Sum_probs=34.9
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+++-++|||||+|+.+..+++.+.++....+.|+||
T Consensus 41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp 78 (209)
T KOG3191|consen 41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP 78 (209)
T ss_pred hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH
Confidence 34599999999999999999999999889999999997
No 104
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.90 E-value=6e-05 Score=48.77 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=37.4
Q ss_pred HHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEecCC
Q 044836 43 AQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIP---DDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~---~~~~v~~ie~~~ 89 (90)
++++..++.. .++.+|+|+|+|.||.+..++..++ .+-+|++||.++
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 4455555555 7889999999999999999999432 368999999886
No 105
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.89 E-value=3.5e-05 Score=53.00 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++..+....+..+|||+|||+|..++.+++.. .++|+++|+++
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~ 86 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDR 86 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCH
Confidence 45555555667899999999999999654432 46999999875
No 106
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.89 E-value=2.5e-05 Score=58.32 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=31.2
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++.+|||||||+|..+..+++.. +++|+++|+++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~ 200 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISA 200 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCH
Confidence 3567899999999999999999875 47999999985
No 107
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.88 E-value=2.3e-05 Score=53.88 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++.. ++..++.++||+|||.|-.+++||+. +-.|+++|.++
T Consensus 20 s~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~ 62 (192)
T PF03848_consen 20 SEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISP 62 (192)
T ss_dssp HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSH
T ss_pred HHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCH
Confidence 344444 66778999999999999999999996 78999999875
No 108
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.87 E-value=1.9e-05 Score=46.12 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=25.0
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 59 MEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 59 LEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
||||||+|..+..+++. + ..+|+++|+++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~ 29 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISE 29 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-H
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCH
Confidence 89999999999999998 4 89999999975
No 109
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.87 E-value=3e-05 Score=55.01 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.-.++.. +...+..+|||||||+|..+..+++.. +++|+++|+++
T Consensus 41 ~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 41 TTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred HHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 3334433 455678899999999999999998754 57999999875
No 110
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.86 E-value=5.8e-05 Score=50.55 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=28.5
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++++|||+|||+|..++.+|+..+ ..+|+.-|.++
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~ 79 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE 79 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S-
T ss_pred hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch
Confidence 46789999999999999999999854 67899988764
No 111
>PRK14967 putative methyltransferase; Provisional
Probab=97.84 E-value=4.6e-05 Score=52.52 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|||+|||+|..++.+++. + .++|+++|+++
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~ 69 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISR 69 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCH
Confidence 44579999999999999999975 3 46999999985
No 112
>PRK00811 spermidine synthase; Provisional
Probab=97.84 E-value=2.8e-05 Score=55.80 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=31.5
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+|++||+||||.|..+.++++.-+ ..+|+++|+|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~ 110 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDE 110 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCH
Confidence 5789999999999999999987633 67999999986
No 113
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.84 E-value=2.2e-05 Score=47.61 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=24.7
Q ss_pred EEEEcccccHHHHHHHhhCCC--CCEEEEEecCC
Q 044836 58 TMEIGVYTGYSLLVTALAIPD--DGKVQWMNTNL 89 (90)
Q Consensus 58 vLEiGt~~G~sal~la~~~~~--~~~v~~ie~~~ 89 (90)
|||+|||+|-.+..++...+. ..+++++|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~ 34 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP 34 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH
Confidence 799999999999999999833 38999999985
No 114
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.82 E-value=2.1e-05 Score=50.10 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=28.9
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++||||+.|+.++++++..+ .++++++|.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCH
Confidence 489999999999999999876 67999999986
No 115
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.82 E-value=2.6e-05 Score=57.25 Aligned_cols=33 Identities=15% Similarity=0.032 Sum_probs=28.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+|||||||+|+.+..+++. +++|++||.++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~ 163 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVD 163 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCH
Confidence 4569999999999999999863 68999999875
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.82 E-value=3.6e-05 Score=58.26 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++.. +...++.+|||||||+|..++.+++.. +.+|+++|+++
T Consensus 257 ~l~~~-~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~ 299 (475)
T PLN02336 257 EFVDK-LDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSV 299 (475)
T ss_pred HHHHh-cCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCH
Confidence 34433 334567899999999999999999876 57999999985
No 117
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.82 E-value=4.6e-05 Score=52.98 Aligned_cols=33 Identities=9% Similarity=-0.090 Sum_probs=29.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..+||++|||.|..++|||+. +.+|+++|+++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~ 69 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSE 69 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCH
Confidence 4579999999999999999973 67999999985
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.81 E-value=0.00011 Score=50.41 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
....++.......+.++|||||||+|..+..+++. ..+++++|+++
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~ 80 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASE 80 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCH
Confidence 33445555555567889999999999999988875 46899999875
No 119
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.81 E-value=3.3e-05 Score=47.44 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+|||+|||+|..++.+++.. ..+++++|+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~ 33 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDP 33 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSH
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECH
Confidence 3589999999999999999886 58999999986
No 120
>PHA03412 putative methyltransferase; Provisional
Probab=97.80 E-value=6.1e-05 Score=53.47 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIP--DDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~--~~~~v~~ie~~~ 89 (90)
..++..++.+. .......+|||+|||+|..++.+++.++ ...+|+++|+|+
T Consensus 34 fTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~ 86 (241)
T PHA03412 34 FTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH 86 (241)
T ss_pred CCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH
Confidence 45556656542 2344578999999999999999998764 257999999985
No 121
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.79 E-value=5.8e-05 Score=55.27 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=29.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+|||||||+|..++.+++. +.+|+++|+++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~ 176 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISA 176 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCH
Confidence 5679999999999999999974 57999999985
No 122
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.79 E-value=4.1e-05 Score=57.61 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=32.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.....+||||||+|..++.+|+..| +..++++|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~ 156 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHT 156 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCH
Confidence 3456999999999999999999997 78999999874
No 123
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.78 E-value=3.6e-05 Score=54.07 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=30.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++|||+|||+|+.|.++++. + ..+|+++|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~ 108 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGY 108 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCH
Confidence 36679999999999999999986 4 57999999874
No 124
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=4.7e-05 Score=55.18 Aligned_cols=38 Identities=18% Similarity=0.046 Sum_probs=33.7
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+++.++++|||||||-|..++++|+.. +.+|+++++|+
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~ 105 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSE 105 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCH
Confidence 346789999999999999999999987 58999999875
No 125
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.74 E-value=4.5e-05 Score=56.06 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=31.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..++||||||+|.....++...+ +.+++++|+|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~ 148 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDP 148 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCH
Confidence 457999999999999999998877 78999999986
No 126
>PRK01581 speE spermidine synthase; Validated
Probab=97.73 E-value=5.1e-05 Score=56.82 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHHH-----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~-----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+.-..-.++++ ..+|++||+||+|+|+.+..+.+. ++..+|+++|+|+
T Consensus 128 ~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDp 184 (374)
T PRK01581 128 FSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDG 184 (374)
T ss_pred cccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCH
Confidence 344444444444443 468999999999999988888775 3368999999986
No 127
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.72 E-value=5.2e-05 Score=55.50 Aligned_cols=35 Identities=9% Similarity=0.261 Sum_probs=29.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++|||||||+|+.+..++.. + ..+|+++|+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~ 154 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTV 154 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCH
Confidence 56789999999999999888865 2 34899999875
No 128
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00016 Score=49.84 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+++..+.+|. .+.+ ...++|+|+|||||..++..+. ++ ..+|+++|+|+
T Consensus 26 Tp~~~Aa~il~-~a~~~g~l~g~~V~DlG~GTG~La~ga~~-lG-a~~V~~vdiD~ 78 (198)
T COG2263 26 TPAPLAAYILW-VAYLRGDLEGKTVLDLGAGTGILAIGAAL-LG-ASRVLAVDIDP 78 (198)
T ss_pred CChHHHHHHHH-HHHHcCCcCCCEEEEcCCCcCHHHHHHHh-cC-CcEEEEEecCH
Confidence 33444444444 4544 4678999999999998887775 44 57999999986
No 129
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00012 Score=52.56 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=31.5
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+...+...|||||+|.|..|..|++. ..+|+++|+|+
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~ 62 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDR 62 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCH
Confidence 34455678999999999999999997 56799999985
No 130
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.68 E-value=0.0001 Score=53.42 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=30.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++.+|||+|||+|..++.+|+. ..+|+++|+++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~ 205 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISA 205 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCH
Confidence 35789999999999999999983 57999999885
No 131
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=8.7e-05 Score=53.88 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=45.1
Q ss_pred ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+...||-+.++.+ ....++.+|+|-|||+|-.+.++++++.+.|+++++|..
T Consensus 88 I~Yt~Dia~I~~~-L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH 139 (314)
T KOG2915|consen 88 ILYTPDIAMILSM-LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFH 139 (314)
T ss_pred EEecccHHHHHHH-hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEec
Confidence 4566776655555 889999999999999999999999999999999999974
No 132
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.67 E-value=3.6e-05 Score=55.26 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=28.0
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+.++.+|||||||-|..++++|+.. +.+|++|.+++
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~ 95 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSE 95 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-H
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCH
Confidence 346788999999999999999999986 47999999874
No 133
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.67 E-value=5.7e-05 Score=53.60 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|-.-.+.+..++. ...++|||||||-|..+..||+. ++.|+++|.++
T Consensus 42 ~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se 91 (243)
T COG2227 42 PLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASE 91 (243)
T ss_pred cchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCCh
Confidence 4444455554554 57899999999999999999985 69999999875
No 134
>PHA03411 putative methyltransferase; Provisional
Probab=97.66 E-value=0.00016 Score=52.35 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=31.8
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
......+|||+|||+|..++.+++..+ ..+|+++|+++
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp 98 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNP 98 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCH
Confidence 344567999999999999999988765 57999999985
No 135
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.66 E-value=0.00012 Score=52.64 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
.+..+.++|||||||+|..++.+++..| +.+++.+|.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~ 181 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL 181 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec
Confidence 3445778999999999999999999998 789999985
No 136
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.65 E-value=9e-05 Score=54.85 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..+|||||||+|..++.+++.++ +.+++++|.++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~ 147 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSP 147 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCH
Confidence 467999999999999999999886 58999999874
No 137
>PLN02366 spermidine synthase
Probab=97.63 E-value=0.00017 Score=52.61 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHH-----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~-----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++....-.++++ ..+|++||+||+|.|..+.++++. +...+|+.+|+|+
T Consensus 70 ~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~ 125 (308)
T PLN02366 70 TERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDK 125 (308)
T ss_pred cCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCH
Confidence 34444444445444 357999999999999999999986 5467999999985
No 138
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.58 E-value=0.0001 Score=42.43 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=26.9
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+++|+|||.|..+..+++ ....+++++|.++
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~ 31 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISP 31 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCH
Confidence 589999999999999998 3378999999874
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.53 E-value=0.00015 Score=51.60 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=31.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+|++||+||+|+|..+..+++..+ ..+++.+|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~ 106 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDE 106 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCH
Confidence 5788999999999999988887654 67899999985
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.53 E-value=0.00019 Score=54.34 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=29.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|||+|||+|..++.+|+. .++|+++|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~ 329 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVE 329 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCH
Confidence 35679999999999999999986 36899999985
No 141
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.51 E-value=0.00022 Score=48.01 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=28.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|||||||+|..+..+++.. ...++++|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~ 46 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQ 46 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCH
Confidence 356799999999999999998764 35789999874
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.51 E-value=0.00026 Score=56.57 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=33.4
Q ss_pred HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+..++++|||+|||+|..+++++++ + ..+|+++|+++
T Consensus 532 ~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~ 571 (702)
T PRK11783 532 MIGQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSN 571 (702)
T ss_pred HHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCH
Confidence 3455668899999999999999999985 3 45799999985
No 143
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.50 E-value=0.00036 Score=47.48 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+...+++...+.. .++.+|||+|||+|+.+..+++. ..+++++|+++
T Consensus 27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~ 77 (224)
T TIGR01983 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASE 77 (224)
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCH
Confidence 4444555544443 34789999999999999998875 35699999874
No 144
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.49 E-value=0.00027 Score=51.47 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++..| ...++..+||.+||.|.-|..+++.++++++|+++|.|+
T Consensus 11 vl~~L-~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~ 54 (296)
T PRK00050 11 VVDAL-AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP 54 (296)
T ss_pred HHHhh-CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH
Confidence 44443 234567999999999999999999998789999999986
No 145
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.48 E-value=0.0002 Score=54.18 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=30.6
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...+.++|||||||+|..+..+++. ..+|+++|+++
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~ 69 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIE 69 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCH
Confidence 3445679999999999999999986 46899999875
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.45 E-value=0.00027 Score=53.23 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.0
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..++++|||+|||+|..++..+. +...+|+++|+++
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~ 253 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQ 253 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCH
Confidence 456789999999999999887664 3256999999985
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.44 E-value=0.00026 Score=53.19 Aligned_cols=34 Identities=12% Similarity=-0.102 Sum_probs=29.6
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|||+|||+|..++.+|+. ..+|+++|+++
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~ 324 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVP 324 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCH
Confidence 35679999999999999999986 35899999975
No 148
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.43 E-value=0.00036 Score=50.85 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|..+..+..++...+..+|||+|||+|..++..+.. +++++++|+|+
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~ 214 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDW 214 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCH
Confidence 4566666666677777889999999999987775542 68999999985
No 149
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00018 Score=51.61 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=33.8
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++.+|||||-+|..|+.||+... .-.|.++|||+
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~ 92 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDP 92 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccH
Confidence 45799999999999999999999998 67899999986
No 150
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.41 E-value=0.00039 Score=50.56 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|....=+..-+.+.++..|||||.|||-.|..|.++ +.+|+++|+|+
T Consensus 43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dp 90 (315)
T KOG0820|consen 43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDP 90 (315)
T ss_pred CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCc
Confidence 3444444444456678889999999999999999987 78999999986
No 151
>PRK03612 spermidine synthase; Provisional
Probab=97.40 E-value=0.00028 Score=54.66 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=31.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++++||+||+|+|..+..+++. ++..+|+.+|+|+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~ 331 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDP 331 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCH
Confidence 57899999999999999999874 5347999999986
No 152
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.31 E-value=0.00035 Score=49.50 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+++..++-+...+...+...|||||+|.|..|..|++.. .+++++|+|+
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~ 62 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDP 62 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSH
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcH
Confidence 456666666666666788999999999999999999885 7899999985
No 153
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.31 E-value=0.00038 Score=51.12 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-...++||||||+.||-+..|+..= ...|+++|.++
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~ 148 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSP 148 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCCh
Confidence 4688999999999999999999862 46799999864
No 154
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.28 E-value=0.00076 Score=46.07 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=42.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+++..++.+...+.-.++.-|||+|.|||..|-.+.+..-++..++++|.++
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~ 83 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP 83 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH
Confidence 345556666666555666788999999999999998888766688999999875
No 155
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.25 E-value=0.0007 Score=50.37 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=29.4
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++|||+|||+|..++.+|.. ..+|+++|+++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~ 265 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIES 265 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCH
Confidence 45789999999999999999953 57899999985
No 156
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.24 E-value=0.00021 Score=51.57 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=27.9
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++|||+|||+|..+.-||+. ++.|++||.++
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~ 121 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASD 121 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccH
Confidence 67999999999999999985 68999999863
No 157
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.24 E-value=0.00067 Score=48.28 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCeEEEEcccccHH----HHHHHhhCCC----CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYS----LLVTALAIPD----DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~s----al~la~~~~~----~~~v~~ie~~~ 89 (90)
++.+|+++|||+|-. |+.+++..+. +.+|+++|+|+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~ 142 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL 142 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH
Confidence 456999999999974 4555565542 57999999985
No 158
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.24 E-value=0.00088 Score=49.57 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHH-HHHHHHHhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQ-FLSMLLKLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~-ll~~l~~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+.. ++..+....+ +.+|||+|||+|..++.+++.. .+|+++|+++
T Consensus 180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~ 229 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAK 229 (353)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCH
Confidence 43333 3444444433 4579999999999999999874 4899999875
No 159
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.20 E-value=0.00039 Score=49.40 Aligned_cols=50 Identities=18% Similarity=0.083 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+..+---.|..+.. +.-|||||||+|.|+..+... +-..+++|+++
T Consensus 31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSp 82 (270)
T KOG1541|consen 31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISP 82 (270)
T ss_pred eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCH
Confidence 333444433334455555 779999999999999877653 45678999886
No 160
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.18 E-value=0.0015 Score=44.45 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++..+....+.++|||++||+|..++.+++.- ..+|+.+|.++
T Consensus 40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~ 82 (189)
T TIGR00095 40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDR 82 (189)
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCH
Confidence 33343344578999999999999999999863 35899999875
No 161
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0006 Score=47.96 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=35.9
Q ss_pred CCHHHHH-HHHHHH-HhcCCCeEEEEcccccHHHHHHHhhCCCCCEE-EEEec
Q 044836 38 SAPDEAQ-FLSMLL-KLINAKNTMEIGVYTGYSLLVTALAIPDDGKV-QWMNT 87 (90)
Q Consensus 38 ~~~~~~~-ll~~l~-~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v-~~ie~ 87 (90)
+.|..-+ .|..|- .+.+.-+.|+||+|+||.+.+++.-+...|.+ ++||.
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh 116 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH 116 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhh
Confidence 3444443 444433 37788899999999999999999777766654 77764
No 162
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.12 E-value=0.00087 Score=45.86 Aligned_cols=31 Identities=26% Similarity=0.185 Sum_probs=27.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+||||||.|-..+.+|+..| +..++++|+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~ 50 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIR 50 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecc
Confidence 899999999999999999998 7899999975
No 163
>PLN02823 spermine synthase
Probab=97.11 E-value=0.00093 Score=49.40 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=31.4
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+|++||.||+|.|.++.++.+.-+ ..+|+.+|+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~ 137 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQ 137 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCH
Confidence 4789999999999999998888544 57999999986
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.10 E-value=0.0017 Score=45.65 Aligned_cols=58 Identities=22% Similarity=0.117 Sum_probs=38.8
Q ss_pred hCCCccccCCHHHH-HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 30 KHPQNFMFSAPDEA-QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 30 ~~~~p~m~~~~~~~-~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+..+|.+..++..- .=+..+........+||||||.|-+.+.+|...| +--+++||+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~ 81 (227)
T COG0220 23 EDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIR 81 (227)
T ss_pred HhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEe
Confidence 45566555555322 0011222222346899999999999999999999 6689999874
No 165
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=97.03 E-value=0.0012 Score=46.05 Aligned_cols=56 Identities=21% Similarity=0.103 Sum_probs=45.6
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecC
Q 044836 32 PQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTN 88 (90)
Q Consensus 32 ~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~ 88 (90)
|+|.+.. |.--...+.++-..+|..|+|+|+--|.|++++|..+-. ..+|.++|+|
T Consensus 48 G~p~~k~-p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdId 106 (237)
T COG3510 48 GIPCIKS-PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDID 106 (237)
T ss_pred cccccCC-HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecc
Confidence 5676654 444558889999999999999999999999999986543 3699999986
No 166
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.99 E-value=0.0013 Score=45.89 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.|.--+++.. ....++.+||..|||.|+-.+|||+. +-+|+++|+++
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~ 69 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSP 69 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-H
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCH
Confidence 34554444444 33556679999999999999999985 57999999875
No 167
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.97 E-value=0.0023 Score=47.48 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=34.0
Q ss_pred CHHHHH-HHHHHHHhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 39 APDEAQ-FLSMLLKLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~-ll~~l~~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+.+ ++..+....+ +.+|||++||+|..++.+++.. .+|+++|+++
T Consensus 188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~ 238 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISK 238 (362)
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCH
Confidence 333344 3334344333 3589999999999999999874 5899999875
No 168
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.96 E-value=0.003 Score=47.41 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=30.2
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+|||++||+|.-++.+|...+ ..+|+++|+|+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~ 91 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINP 91 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCH
Confidence 35899999999999999998876 56899999986
No 169
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.91 E-value=0.0016 Score=45.23 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHhc-CCC-eEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 45 FLSMLLKLI-NAK-NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 45 ll~~l~~~~-~~~-~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
++..|.+.. +.. +|||||+|||--+.++|+.+| +-+-..-|.+
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~ 58 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPD 58 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCC
Confidence 444444433 233 599999999999999999999 5444444443
No 170
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.89 E-value=0.0013 Score=48.82 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.0
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+.+.|.|||+|||||..++.-|++= ..+|+++|-+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S 92 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS 92 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEech
Confidence 6789999999999999999999873 5799999965
No 171
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.82 E-value=0.0033 Score=45.01 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=31.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+|++|||+|+|.|..+.+....++.-.+++++|.++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~ 68 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP 68 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH
Confidence 4789999999999998888888888667899999875
No 172
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.79 E-value=0.005 Score=40.88 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=31.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+|||+|++.|.-+-++.+...+.++|+++|+.+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 458999999999999999999985579999999875
No 173
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.77 E-value=0.0032 Score=44.26 Aligned_cols=33 Identities=9% Similarity=-0.107 Sum_probs=29.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+||..|||.|.-++|||+. +-+|+++|+++
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~ 75 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSE 75 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCH
Confidence 4579999999999999999985 67899999985
No 174
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.68 E-value=0.005 Score=42.48 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=29.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|||+|||.|-.-.+|.+. .+.+.+++|+++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~ 46 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDP 46 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCH
Confidence 45789999999999988888875 368899999985
No 175
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.67 E-value=0.0017 Score=44.86 Aligned_cols=38 Identities=13% Similarity=-0.069 Sum_probs=28.8
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
..+..+|+|.-||.|+.++.+|+.-+ ..+|+++|+||+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~ 136 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPD 136 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HH
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHH
Confidence 46788999999999999999998544 688999999974
No 176
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.66 E-value=0.0059 Score=47.09 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=35.3
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++.+|||++++.|.-|..+|+.+++.|.|+++|+++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~ 148 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA 148 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH
Confidence 346778999999999999999999999889999999975
No 177
>PHA01634 hypothetical protein
Probab=96.51 E-value=0.0039 Score=40.99 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=30.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++|++||.+.|-|+++++.. + ..+|+++|.++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~-G-AK~Vva~E~~~ 61 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR-G-ASFVVQYEKEE 61 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc-C-ccEEEEeccCH
Confidence 47899999999999999999975 2 56999999875
No 178
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0046 Score=41.60 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++.+.-.. ..+++++++|||+|... ++..++.+-.|.++|++|
T Consensus 33 AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdp 81 (185)
T KOG3420|consen 33 AASMLYTIHNTYGDIEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDP 81 (185)
T ss_pred HHHHHHHHHhhhccccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCH
Confidence 34455553332 46899999999999977 666777788999999987
No 179
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.43 E-value=0.0039 Score=43.25 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=25.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-.++||+||+.|..|..||... .+++++|+++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~ 75 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISP 75 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-H
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCH
Confidence 3599999999999999999874 5899999874
No 180
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.31 E-value=0.011 Score=40.81 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=30.4
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
...+.++|+|||.|+|..+..++++.| +.+++.+|.
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl 132 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL 132 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-
T ss_pred cccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc
Confidence 345778999999999999999999999 789998885
No 181
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.18 E-value=0.0081 Score=40.94 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=28.1
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+++|||||.|+=++-+|-..| +.+++-+|.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~ 81 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESV 81 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCC
Confidence 899999999999999999998 8899999975
No 182
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.09 E-value=0.0027 Score=45.52 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=26.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+-+++||+|||||..+-.+-.. ..+++++|+|+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~ 157 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISE 157 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhH
Confidence 4679999999999998877654 35788888874
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.05 E-value=0.012 Score=45.11 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=26.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCC---CCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIP---DDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~---~~~~v~~ie~~~ 89 (90)
.+.|++||||+|-.....+++.. ...+|++||.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 46899999999999877776642 246999999886
No 184
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.04 E-value=0.0087 Score=42.99 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=31.2
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDG-KVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~-~v~~ie~~~ 89 (90)
++..+..+|||-.||-||.|+.-++. ++ +|+|+|.||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp 167 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDP 167 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCC
Confidence 34457889999999999999987775 56 999999886
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.97 E-value=0.011 Score=45.73 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+...+||||||.|-..+.+|...| +.-++++|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~ 380 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVY 380 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEee
Confidence 467899999999999999999998 6789999975
No 186
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.92 E-value=0.0096 Score=40.02 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=25.4
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.|+|+.||.|..|+.+|+.. .+|++||+|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~ 31 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDP 31 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-H
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCH
Confidence 479999999999999999983 5799999986
No 187
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.91 E-value=0.01 Score=41.51 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=29.6
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+++++|||+|.|.=++-+|-..| +.+|+-+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~ 100 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESL 100 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccC
Confidence 79999999999999999997777 6779999875
No 188
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.90 E-value=0.034 Score=41.65 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=29.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+++||||+++|.-|-.+++. +++|++||..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh
Confidence 57789999999999999999986 67999999754
No 189
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.87 E-value=0.026 Score=42.38 Aligned_cols=56 Identities=16% Similarity=-0.019 Sum_probs=40.9
Q ss_pred ccccCCHHHHHH-HHHHHHhcCC---CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 34 NFMFSAPDEAQF-LSMLLKLINA---KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 34 p~m~~~~~~~~l-l~~l~~~~~~---~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|.|....|..-+ +..+.+..+. -+|||.-+|+|.-++.+++..+...+|+++|+|+
T Consensus 20 P~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~ 79 (374)
T TIGR00308 20 PRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINP 79 (374)
T ss_pred chhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH
Confidence 556666664433 3344444444 3899999999999999999875357999999986
No 190
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.87 E-value=0.01 Score=42.58 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCC-eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAK-NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~-~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++..++...+.. .++|+|||+|-.+..+|+.. -+|+++|+++
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~ 65 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSE 65 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCH
Confidence 44777777766655 89999999997777777763 4699999875
No 191
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.76 E-value=0.016 Score=40.98 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=28.5
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+|++||-||-|.|..+..+.+.- +..+|+.+|+|+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~ 110 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDP 110 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-H
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecCh
Confidence 479999999999999988888654 368999999986
No 192
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.75 E-value=0.0051 Score=44.09 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.+.+|||||||.|-+..=+.+..++ +-+|+++|.+|
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp 107 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP 107 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh
Confidence 4458999999999999989988774 36999999775
No 193
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=95.74 E-value=0.016 Score=42.05 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=32.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCC-----CEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDD-----GKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~-----~~v~~ie~~~ 89 (90)
+..++||+++|||-.|..+.+.++.. ++|+.+|+||
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp 140 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP 140 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH
Confidence 44699999999999999999999842 8999999997
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.73 E-value=0.023 Score=41.21 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=31.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+|++||.||.|-|..+..+.+..+ ..+++.+|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~ 110 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDP 110 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCH
Confidence 4568999999999999999888876 78999999986
No 195
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.65 E-value=0.055 Score=38.78 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=40.2
Q ss_pred cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhC------CCCCEEEEEecCC
Q 044836 35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAI------PDDGKVQWMNTNL 89 (90)
Q Consensus 35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~------~~~~~v~~ie~~~ 89 (90)
....+...+.++..++...+..+|+|-.||+|...+.+.+.+ ....+++++|+++
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~ 87 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP 87 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H
T ss_pred eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcH
Confidence 335667888888888877788899999999999988888754 1368999999875
No 196
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.023 Score=39.59 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=34.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+|+|+|+.-|-=+-..++.++++++|+++|+.|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 4679999999999999999999999889999999976
No 197
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.33 E-value=0.03 Score=39.33 Aligned_cols=51 Identities=25% Similarity=0.219 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcccccH--HHHHHHhhCCC-CCEEEEEecCC
Q 044836 39 APDEAQFLSMLLKLINAKNTMEIGVYTGY--SLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~--sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.|+.++|+..|+.-.+++.++|+.+.-|. +|+.||.+... +|++++|-.++
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~ 79 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE 79 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh
Confidence 36789999999999999999999876543 57777766554 79999997764
No 198
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=95.22 E-value=0.083 Score=37.88 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCC----CCEEEEEecCC
Q 044836 42 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPD----DGKVQWMNTNL 89 (90)
Q Consensus 42 ~~~ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~----~~~v~~ie~~~ 89 (90)
++.++..+-+. .+...++|.|+|.|..+.|++..++. ...++.||...
T Consensus 3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 45566665543 35669999999999999999999953 47889999754
No 199
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.10 E-value=0.0084 Score=41.86 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 41 DEAQFLSMLLK----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 41 ~~~~ll~~l~~----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
..|+.+...+- ..+.|+|||+|+|+|.-++.-|++- ...|++.|++|+
T Consensus 62 agG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~ 113 (218)
T COG3897 62 AGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPW 113 (218)
T ss_pred hhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhh--hHHHHhcCCChH
Confidence 34444444332 3578999999999999998888763 357777777653
No 200
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.08 E-value=0.045 Score=41.47 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=29.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+.|||+|+|+|..+...|.+ + ..+|+++|.++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA-G-A~~vYAvEAS~ 210 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA-G-AKKVYAVEASE 210 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHh-C-cceEEEEehhH
Confidence 47889999999999988877765 3 57999999753
No 201
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=95.07 E-value=0.059 Score=32.14 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=19.7
Q ss_pred cCCCeEEEEcccccHHHH-HHHhhCCCCCEEEEE
Q 044836 53 INAKNTMEIGVYTGYSLL-VTALAIPDDGKVQWM 85 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal-~la~~~~~~~~v~~i 85 (90)
..||+||-||+.+||.-. .++.+..-++.-+.+
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV 70 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGV 70 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEE
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEE
Confidence 568999999999999432 355555544555444
No 202
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.02 E-value=0.096 Score=37.72 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
....+...++...+..+|||...+.|.=|..+|+.+++.|+|+++|+++
T Consensus 72 ~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~ 120 (283)
T PF01189_consen 72 ESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP 120 (283)
T ss_dssp HHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH
T ss_pred cccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCH
Confidence 3344445556667788999999999999999999999899999999874
No 203
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.99 E-value=0.043 Score=38.83 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=33.2
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+..+||=+|.++|.+-..++..++++|.|+++|.++
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~ 108 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP 108 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc
Confidence 45688999999999999999999999999999999875
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.85 E-value=0.056 Score=37.42 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 42 EAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 42 ~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++.. +.+.+...++|||+|.|-..++.|...+ -.+.++||+.+
T Consensus 31 ~~~il~~-~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~ 76 (205)
T PF08123_consen 31 VSKILDE-LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILP 76 (205)
T ss_dssp HHHHHHH-TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SH
T ss_pred HHHHHHH-hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEech
Confidence 3344433 4566778999999999998888887665 56799999864
No 205
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.096 Score=39.44 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHH---------hcC--CCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEecCCC
Q 044836 37 FSAPDEAQFLSMLLK---------LIN--AKNTMEIGVYTGYSLLVTALAIPD-------DGKVQWMNTNLY 90 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~---------~~~--~~~vLEiGt~~G~sal~la~~~~~-------~~~v~~ie~~~~ 90 (90)
...|+.++++..++. .-. +-+++|||.|.|..+.-|.+.+.. ..+++.||+|++
T Consensus 49 iTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 49 ITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 455666666554442 223 458999999999999988887632 478999998863
No 206
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.54 E-value=0.039 Score=42.98 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=24.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
.||+||||||..+++.+.+.. -+||++|.
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~Ev 97 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEV 97 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehh
Confidence 579999999999999888864 46999985
No 207
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.44 E-value=0.084 Score=37.06 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=28.2
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-..+-|+|+|+|..+...|++ .-+|++||.||
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dP 64 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDP 64 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCc
Confidence 378999999999999988887 46899999987
No 208
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.40 E-value=0.15 Score=35.80 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=28.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCC-------CEEEEEecCCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDD-------GKVQWMNTNLY 90 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~-------~~v~~ie~~~~ 90 (90)
+-+|+|+|.|.|..+.-+...+... .+++.||++|+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 4599999999999999999988743 48999999875
No 209
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.18 E-value=0.079 Score=40.95 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhc-------CCCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLI-------NAKNTMEIGVYTGYSLLVTALAIPD-------DGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~-------~~~~vLEiGt~~G~sal~la~~~~~-------~~~v~~ie~~~ 89 (90)
.++..+.++..++... ...+|||.|||+|...+.++..++. .-.++++|+++
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~ 73 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK 73 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence 3445555555433211 4569999999999999999988752 24678888875
No 210
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=93.75 E-value=0.055 Score=38.34 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|||||||||..=-..- +.+..+||++|.|+
T Consensus 79 ~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~ 109 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYP--WKPINSVTCLDPNE 109 (252)
T ss_pred ceEEecccCCCCccccc--CCCCceEEEeCCcH
Confidence 67999999997533221 11478999999886
No 211
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.67 E-value=0.11 Score=38.57 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=34.0
Q ss_pred ccCCHHHHHHHHHHH-HhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 36 MFSAPDEAQFLSMLL-KLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 36 m~~~~~~~~ll~~l~-~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+.+.+.+-|...+ ...+ +.++||+=||+|..++.+|.. ..+|+++|+++
T Consensus 175 fQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~ 228 (352)
T PF05958_consen 175 FQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVE 228 (352)
T ss_dssp --SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC---SSEEEEEES-H
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh---CCeEEEeeCCH
Confidence 345555555555443 3333 338999999999999999986 46899999864
No 212
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.65 E-value=0.13 Score=30.07 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=25.3
Q ss_pred HhcCCCe-EEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKN-TMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~-vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...+... ++|+|||+|..+ .++...+....++++|.++
T Consensus 44 ~~~~~~~~~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~ 82 (257)
T COG0500 44 RLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSP 82 (257)
T ss_pred hhccCCCeeEEecCCcCHHH-HHHHhCCCCceEEEEeCCH
Confidence 3333334 999999999988 5554444224788888764
No 213
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.45 E-value=0.094 Score=37.51 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIP 77 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~ 77 (90)
++++|||+|+|+|.-++.+|....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~ 109 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG 109 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc
Confidence 466899999999999999988654
No 214
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.22 E-value=0.083 Score=41.39 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..-..++.|+..++. ...+.+||+-||||.+++.+|+. -++|+++|+++
T Consensus 363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~ 415 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISP 415 (534)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecCh
Confidence 344667777777764 35578899999999999999997 46899999886
No 215
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.13 E-value=0.22 Score=35.23 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 41 DEAQFLSMLLKLINA-KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 41 ~~~~ll~~l~~~~~~-~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
+...+.-.+.+..+. --+.|||||.|...+.++-..| +--|.++||
T Consensus 46 DWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEI 92 (249)
T KOG3115|consen 46 DWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEI 92 (249)
T ss_pred cHHHhhhhhhhhccccceEEeeccCccchhhhccccCc-cceeeeehh
Confidence 455566665555443 4789999999999999999988 667777775
No 216
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.98 E-value=0.14 Score=36.03 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=37.9
Q ss_pred HHHHHHHH--HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLL--KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~--~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+|.-|- .+.+..+||=+|..+|.+..+++...+ +|.++++|.++
T Consensus 63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~ 110 (231)
T COG1889 63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSP 110 (231)
T ss_pred HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecc
Confidence 44444332 346788999999999999999999999 99999999875
No 217
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.24 Score=36.84 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836 39 APDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG-KVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~-~v~~ie~~~ 89 (90)
....+++...++.-.++.+|||...+-|.=|.++|+.+++.+ .|+++|+++
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~ 192 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP 192 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH
Confidence 344555666667777889999999999999999999999744 559999874
No 218
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.76 E-value=0.23 Score=35.47 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=29.2
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+.+.+||||..||..|-.+.+. + ..+|+++|..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-g-Ak~VyavDVG 111 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-G-AKHVYAVDVG 111 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-C-CcEEEEEEcc
Confidence 58899999999999999999875 2 5699999964
No 219
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.67 E-value=0.15 Score=32.42 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEccccc--HHHHHHHh-hCCCCCEEEEEecCC
Q 044836 60 EIGVYTG--YSLLVTAL-AIPDDGKVQWMNTNL 89 (90)
Q Consensus 60 EiGt~~G--~sal~la~-~~~~~~~v~~ie~~~ 89 (90)
|||...| .++.+++. ....+++|+++|.+|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p 33 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNP 33 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---H
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCH
Confidence 7999999 77777753 355589999999986
No 220
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.58 E-value=0.33 Score=35.66 Aligned_cols=37 Identities=5% Similarity=-0.028 Sum_probs=32.9
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++..++|--+|-|.-|..+++.++ +|+|+++|.|+
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~ 54 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDP 54 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCH
Confidence 34567899999999999999999998 49999999986
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=92.58 E-value=0.24 Score=35.63 Aligned_cols=35 Identities=6% Similarity=-0.073 Sum_probs=30.7
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+|++||-||.|=|..+.-+.+. + .+|+.+|+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~ 104 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADE 104 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCH
Confidence 468999999999999999999887 3 3999999985
No 222
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=92.55 E-value=0.21 Score=36.90 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=28.3
Q ss_pred HHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..|+..+++.. +..+|||+|||-|.=..=+..+ + -+.++++|+++
T Consensus 47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~ 95 (331)
T PF03291_consen 47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISE 95 (331)
T ss_dssp HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-H
T ss_pred HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCH
Confidence 33455544432 6789999999988865555554 2 57999999874
No 223
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.53 E-value=0.35 Score=37.07 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+.++..+....+...++|+|.|.||.+-.|+-..+ -.|++||.|
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegs 185 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGS 185 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccc
Confidence 44555555667899999999999999999998764 789999976
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.42 E-value=0.17 Score=34.99 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=25.9
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 58 TMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 58 vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|.||||--||..++|.+.-. ..+++++|+++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~ 31 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINP 31 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSH
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCH
Confidence 67999999999999999744 56899999874
No 225
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=92.31 E-value=0.22 Score=37.18 Aligned_cols=54 Identities=13% Similarity=-0.025 Sum_probs=41.4
Q ss_pred cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
+|+++.-..+=.+.+-....+..|+|.=+|.|+-|+-+|..-. .+|+++|+||+
T Consensus 169 v~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~ 222 (341)
T COG2520 169 VYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPD 222 (341)
T ss_pred eEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHH
Confidence 3555555555555555566799999999999999999998743 34999999984
No 226
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=92.16 E-value=0.38 Score=32.56 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.--..++..|... ....++||+=+|||..++-..+. + ..+|+.||.|+
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-G-A~~v~fVE~~~ 75 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-G-AKSVVFVEKNR 75 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-H
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-C-CCeEEEEECCH
Confidence 3445566666666 89999999999999999865543 1 46999999874
No 227
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.12 E-value=0.2 Score=35.92 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=25.4
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..|.+|+|||||.-=.++-+....+ +..++++|+|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~ 139 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDS 139 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBH
T ss_pred CCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCH
Confidence 3589999999999888886664433 78999999984
No 228
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.01 E-value=0.32 Score=34.10 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=31.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+|||+|+..|-=+-...+..+++|.|.+||+-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 457899999999998888888888779999999974
No 229
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=91.96 E-value=0.21 Score=34.90 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHh-------cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLKL-------INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~~-------~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+-+++..|... .++.+|||+|||-|-.-..|++.== .++++++|.++
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~ 101 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSE 101 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCH
Confidence 444555555432 3466999999999998888886421 36788888764
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.71 E-value=0.26 Score=35.24 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+....+-.......++..|++.=||.|..++.+|.. ...|++||+||
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDP 126 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDP 126 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccH
Confidence 334444444445445559999999999999999999986 45799999987
No 231
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.43 E-value=0.32 Score=35.16 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHh----cCCCeEEEEccccc--HHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKL----INAKNTMEIGVYTG--YSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~----~~~~~vLEiGt~~G--~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...-.||...++. .+-+++||||||.= -.+-.+|+...++++|+-+|+||
T Consensus 50 r~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP 105 (267)
T PF04672_consen 50 RANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP 105 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc
Confidence 3455566655554 36779999999853 24667777777799999999986
No 232
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=91.34 E-value=0.51 Score=34.14 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=28.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..++||||.|-|-.|..|+.... +|++-|.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~ 126 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASP 126 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCH
Confidence 677899999999999999998765 488888763
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=91.25 E-value=0.48 Score=34.94 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=36.4
Q ss_pred HHHHHHHHHHH----Hhc-CCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecCC
Q 044836 40 PDEAQFLSMLL----KLI-NAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~----~~~-~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~~ 89 (90)
..+-.+|+.-. +.. .+..++|+|||.|.-+..|.+++.+ ..+.+.+|++.
T Consensus 57 r~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 57 NDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 44555666433 333 4458999999999999998888853 36799999974
No 234
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=90.65 E-value=0.89 Score=34.56 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=32.6
Q ss_pred HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836 48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG-KVQWMNTNL 89 (90)
Q Consensus 48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~-~v~~ie~~~ 89 (90)
.+....++++||++=|.||..+++.|.+ ++ +||+||.+.
T Consensus 211 ~l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~ 250 (393)
T COG1092 211 ALGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSK 250 (393)
T ss_pred HHhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccH
Confidence 4455567999999999999999998886 55 999999874
No 235
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=90.49 E-value=0.19 Score=36.53 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=36.1
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+..+||=+|.++|.+-...+..++++|-|+++|.++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 567889999999999999999999999999999999875
No 236
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.17 E-value=0.58 Score=34.51 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=27.7
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+....||---|.|.-+..+.+.+++ ++|+++|.|+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~ 54 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDP 54 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-H
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCH
Confidence 556678999999999999999999995 9999999986
No 237
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.13 E-value=0.6 Score=35.81 Aligned_cols=51 Identities=18% Similarity=0.027 Sum_probs=38.4
Q ss_pred ccCCHHHHHHHHHHHH----hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 36 MFSAPDEAQFLSMLLK----LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 36 m~~~~~~~~ll~~l~~----~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
....+.+.+-|...+. ..+..+++|+=||.|..++.+|.. ..+|+++|+++
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~ 325 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISP 325 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCH
Confidence 3455666665554443 345679999999999999999954 67999999875
No 238
>PRK10742 putative methyltransferase; Provisional
Probab=89.42 E-value=0.78 Score=32.93 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHhcCCC--eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAK--NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~--~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+.+.. +|||.-.|+|--++.+|+. +++|+.+|.++
T Consensus 82 vglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p 120 (250)
T PRK10742 82 VGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNP 120 (250)
T ss_pred hCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCH
Confidence 4445555 8999999999999999987 68899999886
No 239
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.33 E-value=1.4 Score=28.54 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|-..+++..+..+|+|||-|.=...+...+.. +..|+++|+++
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~ 46 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECcc
Confidence 44566777888899999988765444333332 47899999986
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.38 E-value=1.3 Score=31.31 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHHHh-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 46 LSMLLKL-INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 46 l~~l~~~-~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|..+++. .+..++.||||--+|.+.++.+..+ ...+++.|+++
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~ 50 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVP 50 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeeccc
Confidence 3334443 3455699999999999999999887 78899999875
No 241
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=88.24 E-value=0.96 Score=30.32 Aligned_cols=52 Identities=17% Similarity=0.006 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCC--------EEEEEecCC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDG--------KVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~--------~v~~ie~~~ 89 (90)
..|..+..|-.++...+...+||-=||+|...+-.|....+-. ++++.|+++
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~ 71 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP 71 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH
Confidence 4577888888888888889999999999998866665544222 489999874
No 242
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=87.54 E-value=1.2 Score=33.38 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=41.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 36 MFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 36 m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+|..++.+-+|++..++..|||==||||...+-.. +- +++++++|++.
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag--l~-G~~viG~Did~ 229 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAG--LM-GARVIGSDIDE 229 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhh--hc-CceEeecchHH
Confidence 36679999999999999999999999998886544433 33 78999999863
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=86.81 E-value=0.81 Score=33.22 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=21.8
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|++|+=||+| .-.++++|++....+..|+.+|+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~ 156 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP 156 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSH
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH
Confidence 36799999999 6889999997655478999999986
No 244
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.64 E-value=1.4 Score=33.23 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++......+.+..+||-|.. .|..++.+...-| .+|++||.||
T Consensus 24 p~vD~~aL~i~~~d~vl~ItS-aG~N~L~yL~~~P--~~I~aVDlNp 67 (380)
T PF11899_consen 24 PRVDMEALNIGPDDRVLTITS-AGCNALDYLLAGP--KRIHAVDLNP 67 (380)
T ss_pred cHHHHHHhCCCCCCeEEEEcc-CCchHHHHHhcCC--ceEEEEeCCH
Confidence 345556677888889999954 5778888866544 8999999997
No 245
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.55 E-value=2.2 Score=27.60 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
+-..+++..++.+|+|||-|-= ...|+.+.+ +..|+++|+++
T Consensus 4 ~a~~iAre~~~gkVvEVGiG~~---~~VA~~L~e~g~dv~atDI~~ 46 (129)
T COG1255 4 VAEYIARENARGKVVEVGIGFF---LDVAKRLAERGFDVLATDINE 46 (129)
T ss_pred HHHHHHHHhcCCcEEEEccchH---HHHHHHHHHcCCcEEEEeccc
Confidence 3445677888999999997532 233444443 46899999885
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=85.56 E-value=0.86 Score=33.48 Aligned_cols=33 Identities=6% Similarity=-0.026 Sum_probs=19.9
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-++||||||..+.=-.|+.... +=++++.|+|+
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~ 136 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDP 136 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-H
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCH
Confidence 4799999987755334444444 67999999875
No 247
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.42 E-value=4.8 Score=26.73 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHH--HHHhhCCCCCEEEEEe
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIG-VYTGYSLL--VTALAIPDDGKVQWMN 86 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal--~la~~~~~~~~v~~ie 86 (90)
..++++.++|...++ ..+.++-+| +|+|=+|+ .++..++++.+++++|
T Consensus 9 ~~~~~~~~~l~~~v~--~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie 59 (186)
T cd01130 9 TFSPLQAAYLWLAVE--ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE 59 (186)
T ss_pred CCCHHHHHHHHHHHh--CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence 346888889988665 467888888 89998886 4455566666777775
No 248
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.12 E-value=2.7 Score=30.90 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=30.8
Q ss_pred HHHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 49 LLKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 49 l~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+.+..+..+||.+|+|. |..++.+|++.+ ..++++++.+
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~ 218 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRV 218 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 34456778999999988 889999999986 3568888765
No 249
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=84.84 E-value=3.2 Score=30.23 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 48 MLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 48 ~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+..+.++||++=|.||..+++.+.+ + ..+|+++|.+.
T Consensus 117 ~v~~~~~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~ 156 (286)
T PF10672_consen 117 WVRKYAKGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSK 156 (286)
T ss_dssp HHHHHCTTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-H
T ss_pred HHHHHcCCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCH
Confidence 4445578899999999999999987653 2 34899999863
No 250
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.59 E-value=1.8 Score=31.86 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=30.2
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
++.+|+-+|+| .|..++.+|+..+ ..+|+.+|.+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~ 204 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPE 204 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHH
Confidence 34489999998 4888899999988 789999998763
No 251
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=84.46 E-value=3.3 Score=29.91 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=26.2
Q ss_pred CCCeEEEEcccccH---H-HHHHHhhCCC----CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGY---S-LLVTALAIPD----DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~---s-al~la~~~~~----~~~v~~ie~~~ 89 (90)
++-+|.-+||+||= | |+.+.+.++. .-+|++.|+|.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~ 139 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL 139 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH
Confidence 37799999999994 3 3444455542 57999999984
No 252
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=84.32 E-value=1 Score=30.86 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=23.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC--------CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD--------DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~--------~~~v~~ie~~~ 89 (90)
++-+|.-.||++|--+-.||..+.+ .-+|++.|+|+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~ 74 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP 74 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH
Confidence 5669999999999655444443332 35999999985
No 253
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.71 E-value=3.2 Score=31.70 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHh---cCC-CeEEEEcccccHHHHHHHhhCCCCCEEEE
Q 044836 41 DEAQFLSMLLKL---INA-KNTMEIGVYTGYSLLVTALAIPDDGKVQW 84 (90)
Q Consensus 41 ~~~~ll~~l~~~---~~~-~~vLEiGt~~G~sal~la~~~~~~~~v~~ 84 (90)
.+..+|..+-.. .++ ..++|.|+|-|..+-|++..++ .+.++-
T Consensus 165 QqsSllg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l 211 (420)
T KOG2811|consen 165 QQSSLLGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQ-IQNVYL 211 (420)
T ss_pred HHHHHHhHHHhccccCCCcceEEEecCCchHHHHHHHHHhc-cccEEE
Confidence 355566665543 233 6899999999999999999999 555554
No 254
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=83.56 E-value=1.7 Score=30.99 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=31.6
Q ss_pred CCCcc---ccCCHHHHHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhhC---C-CCCEEEEEec
Q 044836 31 HPQNF---MFSAPDEAQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALAI---P-DDGKVQWMNT 87 (90)
Q Consensus 31 ~~~p~---m~~~~~~~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~~---~-~~~~v~~ie~ 87 (90)
..||. -.++...-.-|+.+++.. -|--|+|.|+.-|.|++.++..+ . .+-+|+.+|.
T Consensus 44 ~~wp~~~~tm~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDS 111 (248)
T PF05711_consen 44 RDWPSVAHTMIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDS 111 (248)
T ss_dssp -S-BSS-S-SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-
T ss_pred ccCCCccccccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 45663 134555555555555532 47799999999999998776543 2 2457998884
No 255
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.44 E-value=0.33 Score=33.29 Aligned_cols=49 Identities=29% Similarity=0.446 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHH---hcCCCeEEEEcc-cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLK---LINAKNTMEIGV-YTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~---~~~~~~vLEiGt-~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|....+-....+ ..++++|||+|. ++|.+++++|...| ...|+--|-|+
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne 64 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNE 64 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCH
Confidence 434444444443 357889999995 58999999999988 56777666553
No 256
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=83.36 E-value=13 Score=26.98 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHhhC----CC---CCEEEEEecCC
Q 044836 39 APDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTALAI----PD---DGKVQWMNTNL 89 (90)
Q Consensus 39 ~~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~~~----~~---~~~v~~ie~~~ 89 (90)
.+.+-..|...++. .++-+|.-.||+||--+-.||..+ +. +-+|++.|+|+
T Consensus 99 d~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~ 157 (287)
T PRK10611 99 EAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT 157 (287)
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH
Confidence 34444555544332 234599999999996554444433 21 35899999985
No 257
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=82.85 E-value=3.3 Score=33.72 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCccccCCHHHHHHHHHHHH---hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 21 LKELRELTEKHPQNFMFSAPDEAQFLSMLLK---LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 21 l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~---~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+....+.|++.|+- +...-.||+.-.+ +.+++.|||+||..|.=--..++.+|-++.|+++|+-|
T Consensus 12 ~Dk~Y~lAke~Gyr----sRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 12 LDKYYRLAKELGYR----SRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred chHHHHHHHHhchh----HHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 34555667776653 2444556654333 45889999999999998888888899889999999865
No 258
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=82.53 E-value=1.3 Score=32.29 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh------cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 42 EAQFLSMLLKL------INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 42 ~~~ll~~l~~~------~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
...++..+... ...|+|||+|||+|.-.+.....- ...+...|.|
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~n 148 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFN 148 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc--cceeeeEecc
Confidence 34455555522 478999999999999888776542 2456665554
No 259
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=82.20 E-value=0.92 Score=34.42 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=17.2
Q ss_pred CCCeEEEEcccccHHHHHHHh
Q 044836 54 NAKNTMEIGVYTGYSLLVTAL 74 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~ 74 (90)
++-+|+|+||++|..|+.+.+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred cceeEEEecCCCCccHHHHHH
Confidence 456999999999998877644
No 260
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=82.18 E-value=1.3 Score=34.21 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=33.6
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..||||..+.-|.-|.++|.-|.+.|.|++.|.|.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~ 276 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNE 276 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccch
Confidence 3566999999999999999999999999999999764
No 261
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=82.08 E-value=7.3 Score=28.61 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=43.7
Q ss_pred cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEE
Q 044836 35 FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWM 85 (90)
Q Consensus 35 ~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~i 85 (90)
++....++-.++-.++......++|-+=+..|..+.++++.|+..|.|+.+
T Consensus 182 i~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~ 232 (299)
T PF04189_consen 182 IMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITL 232 (299)
T ss_pred HhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEE
Confidence 445667777777777888899999999999999999999999988888776
No 262
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.78 E-value=2.5 Score=33.15 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=30.3
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++.+|+-+|+| .|..++..|++++ ++|+.+|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 468999999998 5889999999987 4899999875
No 263
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=81.44 E-value=2.9 Score=27.49 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=27.6
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
...+|.+|+-+|.| .|..|+.++.+++ .+++.+|.+
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~ 52 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDER 52 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESS
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCC
Confidence 34678999999988 5888999999986 789998865
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=81.18 E-value=2.4 Score=24.20 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=23.2
Q ss_pred eEEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY 90 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~ 90 (90)
+|+-||. |+.++-+|..+.. +.+|+-++.+++
T Consensus 1 ~vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGG--GFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESS--SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECc--CHHHHHHHHHHHHhCcEEEEEeccch
Confidence 4566665 7888888887765 468988887653
No 265
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=80.98 E-value=3.4 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHHHHHHhc----CCCeEEEEcccccHHHHHHHhh
Q 044836 43 AQFLSMLLKLI----NAKNTMEIGVYTGYSLLVTALA 75 (90)
Q Consensus 43 ~~ll~~l~~~~----~~~~vLEiGt~~G~sal~la~~ 75 (90)
+++|..|-+.. ++...+|||||-|...-.|.+.
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E 79 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE 79 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC
Confidence 44444444332 4568999999999987777653
No 266
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=79.93 E-value=4.4 Score=30.39 Aligned_cols=36 Identities=6% Similarity=-0.044 Sum_probs=26.4
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY 90 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~ 90 (90)
...++|+-||.|.| ++..|+.+.. +.+|+-||.++|
T Consensus 8 ~~~~~vVIvGgG~a--Gl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWA--GAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHH--HHHHHHHhCcCCCeEEEEcCCCC
Confidence 34568999999644 5566777754 578999998775
No 267
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=79.69 E-value=1.7 Score=32.68 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=37.0
Q ss_pred ccccCCHHHHHHHHHHHHhc-----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 34 NFMFSAPDEAQFLSMLLKLI-----NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 34 p~m~~~~~~~~ll~~l~~~~-----~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|.|.+..|-.-++-...+.. ++-+|||.=+|+|.=++..+..++...+|+..|+|+
T Consensus 24 P~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~ 84 (377)
T PF02005_consen 24 PVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISP 84 (377)
T ss_dssp GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-H
T ss_pred cchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCH
Confidence 55555556554442122222 345999999999999999999987668999999985
No 268
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=79.45 E-value=3.1 Score=31.12 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred cCCCeEEEEcccccHH-HHHHHhhCCCCCE
Q 044836 53 INAKNTMEIGVYTGYS-LLVTALAIPDDGK 81 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~s-al~la~~~~~~~~ 81 (90)
+.||+||-||..+||. +..++.+.+.++.
T Consensus 39 ngPKkVLviGaSsGyGLa~RIsaaFG~gAd 68 (398)
T COG3007 39 NGPKKVLVIGASSGYGLAARISAAFGPGAD 68 (398)
T ss_pred CCCceEEEEecCCcccHHHHHHHHhCCCCc
Confidence 4799999999988884 4456666665443
No 269
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.36 E-value=3.2 Score=31.20 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHH---------HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 38 SAPDEAQFLSMLL---------KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l~---------~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++-+.|+|+.-|. ..+...+||-+|.| +|..|+..|++++ ..+|+..|.++
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~ 204 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVA 204 (354)
T ss_pred CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCH
Confidence 4456676666433 34567899999988 6999999999999 78999999764
No 270
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=79.31 E-value=10 Score=27.52 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHHH--HHhhCC---CCCEEEEEec
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIG-VYTGYSLLV--TALAIP---DDGKVQWMNT 87 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal~--la~~~~---~~~~v~~ie~ 87 (90)
.+++..++|..+++ ..+.+|-.| ||+|=+|+. +...++ ++.+++++|-
T Consensus 117 ~~~~~~~~L~~~v~--~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 117 MTAAQRDVLREAVL--ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred CCHHHHHHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 34667788887765 446777776 899988874 444453 2578999984
No 271
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=79.05 E-value=3.8 Score=30.55 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=22.9
Q ss_pred CeEEEEccccc-HHHHHHHhhCCCCCEEEEEecCCC
Q 044836 56 KNTMEIGVYTG-YSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 56 ~~vLEiGt~~G-~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
++|+-||.|.+ .+++..++...++.+|+-+|.++|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 47899998764 333333333444679999998764
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.80 E-value=3.6 Score=30.80 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=30.2
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...+.++|+-+|.| .|-.++.+|+++. ++|+++|+++
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~ 200 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSE 200 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCCh
Confidence 45578899888865 6678889999987 9999999875
No 273
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=78.28 E-value=3.3 Score=29.26 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 44 QFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 44 ~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
++|.+ .-+....+|+|+=.|.||-|..++-++++.|+|++.-.
T Consensus 39 E~L~F-aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p 81 (238)
T COG4798 39 EVLAF-AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP 81 (238)
T ss_pred ceeEE-eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc
Confidence 34444 55678889999999999999999999999999998643
No 274
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.59 E-value=1.1 Score=34.24 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 46 LSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 46 l~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-..++.-..+.+|+++-|..|.+|..+|..+++.|+|+++|.+.
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~ 248 (413)
T KOG2360|consen 205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDA 248 (413)
T ss_pred hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhh
Confidence 33444555678999999999999999999999899999999764
No 275
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.52 E-value=7.2 Score=29.12 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHhCCCccccCCHH-HHHHHHHHHHh------------cC--CCeEEEEcccccHHHHHHHhhCCC-C
Q 044836 16 REHECLKELRELTEKHPQNFMFSAPD-EAQFLSMLLKL------------IN--AKNTMEIGVYTGYSLLVTALAIPD-D 79 (90)
Q Consensus 16 ~~~~~l~~l~~~a~~~~~p~m~~~~~-~~~ll~~l~~~------------~~--~~~vLEiGt~~G~sal~la~~~~~-~ 79 (90)
++..+++++++.+.+.+++ |+ ...+++.+... .+ .++|.-|| |.|.-+-++|.++.. +
T Consensus 49 Re~~vl~~~~~~~~~~~l~-----~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiG-G~GlmG~slA~~l~~~G 122 (374)
T PRK11199 49 REAAMLASRRAEAEALGVP-----PDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVG-GKGQLGRLFAKMLTLSG 122 (374)
T ss_pred HHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEc-CCChhhHHHHHHHHHCC
Confidence 4556666666666655543 33 33444444422 12 26888898 347777777777765 3
Q ss_pred CEEEEEecC
Q 044836 80 GKVQWMNTN 88 (90)
Q Consensus 80 ~~v~~ie~~ 88 (90)
-.|+.+|.+
T Consensus 123 ~~V~~~d~~ 131 (374)
T PRK11199 123 YQVRILEQD 131 (374)
T ss_pred CeEEEeCCC
Confidence 478877764
No 276
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=77.33 E-value=10 Score=28.28 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEc-ccccHHHHH--HHhhCCCCCEEEEEec
Q 044836 40 PDEAQFLSMLLKLINAKNTMEIG-VYTGYSLLV--TALAIPDDGKVQWMNT 87 (90)
Q Consensus 40 ~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal~--la~~~~~~~~v~~ie~ 87 (90)
++..+||...++ ..++||-.| ||+|=+|+. ++..+|++.+++++|-
T Consensus 149 ~~~~~~l~~~v~--~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 149 GDLEAFLHACVV--GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHHHHHHHHHH--cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 445556665443 456787777 899988774 5555777778998884
No 277
>PRK06849 hypothetical protein; Provisional
Probab=77.29 E-value=3.3 Score=30.59 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=27.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY 90 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~ 90 (90)
.++++||-+|++.+ .++.+++.+.+ +.+|+.+|.+++
T Consensus 2 ~~~~~VLI~G~~~~-~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 2 NTKKTVLITGARAP-AALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999997765 46777777765 569999998753
No 278
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=77.01 E-value=24 Score=25.07 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 17 EHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 17 ~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
+..+.+.+-.++..+.-|.|. .++-+++...++...|=+.|..|-|-. ++.++.... +|+=+-+|-|+|
T Consensus 4 p~~~a~AlvhYatsn~t~q~s--~~Ei~~~~~VL~~raPCN~LVFGLghd--sllW~aLN~-gGrTvFLEEd~~ 72 (225)
T TIGR01627 4 PLSPADALQHYRASNGPTALM--EKELKLLSDVLTRRSPCNILVFGLAHQ--YLMWSSLNH-RGRTVFIEEEKI 72 (225)
T ss_pred chhHHHHHHHHHhcCCCcccC--HHHHHHHHHHHHhcCCceEEEeccCcc--hHHHHHhcC-CCeeEEecCCHH
Confidence 456778888888876666554 666778888888888899999998654 455555554 777777776653
No 279
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.87 E-value=5.4 Score=30.18 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 42 EAQFLSMLLKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 42 ~~~ll~~l~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|+.+.. ++.....+|.-+|+| .|.+++.-|...+ .++|+++|+++
T Consensus 174 ~Gav~nt-a~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~ 220 (366)
T COG1062 174 IGAVVNT-AKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINP 220 (366)
T ss_pred hHHhhhc-ccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCH
Confidence 4555544 677788899999975 7999999999887 88999999986
No 280
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=76.77 E-value=19 Score=26.45 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHHHHHh--h---CCCCCEEEEEecC
Q 044836 39 APDEAQFLSMLLKLINAKNTMEIG-VYTGYSLLVTAL--A---IPDDGKVQWMNTN 88 (90)
Q Consensus 39 ~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal~la~--~---~~~~~~v~~ie~~ 88 (90)
++++..+|...++ ..++++-.| ||+|=+|+.-+. . .+++-+++++|-.
T Consensus 134 ~~~~~~~L~~~v~--~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 134 TAAQREAIIAAVR--AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred CHHHHHHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 4667778777665 456777776 899988875443 2 2456788888854
No 281
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=76.54 E-value=5.2 Score=28.99 Aligned_cols=32 Identities=13% Similarity=-0.012 Sum_probs=23.1
Q ss_pred eEEEEcccccHHHHHHHhhC----CCCCEEEEEecCCC
Q 044836 57 NTMEIGVYTGYSLLVTALAI----PDDGKVQWMNTNLY 90 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~----~~~~~v~~ie~~~~ 90 (90)
+|+-||.|. .++..|+.+ .++.+|+-+|.++|
T Consensus 1 ~vvIiGgG~--aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGH--THALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcH--HHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 478899854 466666666 34689999998764
No 282
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=76.32 E-value=4.2 Score=31.23 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=23.5
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
-|+-||||.+-+.+..+.+.. +.+|.-+|.+.|
T Consensus 6 DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~ 38 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPY 38 (443)
T ss_pred eEEEECCChHHHHHHhhhhhC-CCEEEEecCCCC
Confidence 478899986555555554433 679999999876
No 283
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=75.01 E-value=5.1 Score=31.59 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=18.6
Q ss_pred CCCeEEEEcccccHHHHHHHhh
Q 044836 54 NAKNTMEIGVYTGYSLLVTALA 75 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~ 75 (90)
.-+.+||||||+|-.+.+|.+.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC
Confidence 3458899999999999998875
No 284
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=74.99 E-value=5.6 Score=29.69 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.8
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+|+-||+| .|..++..++.++ .+|+.+|.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCH
Confidence 67789999998 6777777777775 5799998753
No 285
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=74.85 E-value=8.5 Score=29.89 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecCC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTNL 89 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~~ 89 (90)
..+.+..+++..++......+|.|--||+|-.-+..++.+.. +..+++.|+++
T Consensus 169 yTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~ 224 (489)
T COG0286 169 YTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND 224 (489)
T ss_pred CChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH
Confidence 456677777777776655669999999999888888777753 36788888763
No 286
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=74.76 E-value=6 Score=30.27 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=26.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEecCCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD---DGKVQWMNTNLY 90 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~---~~~v~~ie~~~~ 90 (90)
..++|+-||. ||.+++.+..+.. +..|+-||.+.|
T Consensus 2 ~~~~iVIlGg--GfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGG--GFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECC--cHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4578999988 6667777777764 377999998876
No 287
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=74.74 E-value=6.2 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=27.5
Q ss_pred CeEEEEcccccHHHHHHHhhC----C---------------CCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAI----P---------------DDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~----~---------------~~~~v~~ie~~~ 89 (90)
.+||-||-|.|.--+++|..+ . ....|+.||+-+
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAd 140 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIAD 140 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecC
Confidence 699999999999999998888 1 114899999865
No 288
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=74.72 E-value=14 Score=30.02 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=34.6
Q ss_pred hCCCccccCCHHHHHHHHHHHHhcC-------CCeEEEEcccccHHHHHHHhhC
Q 044836 30 KHPQNFMFSAPDEAQFLSMLLKLIN-------AKNTMEIGVYTGYSLLVTALAI 76 (90)
Q Consensus 30 ~~~~p~m~~~~~~~~ll~~l~~~~~-------~~~vLEiGt~~G~sal~la~~~ 76 (90)
...+|.+-..+.|.++.....+... ...++|-|||||=|-.+|.-++
T Consensus 18 ~~~~~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai 71 (697)
T PRK11747 18 QEQLPGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGI 71 (697)
T ss_pred HHhCCCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHH
Confidence 3455666778899998888777653 3477999999998876665544
No 289
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.72 E-value=0.94 Score=34.65 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=28.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..|++|||+|.|.|...+++-..+|+--.++-+|.+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~s 147 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEAS 147 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccC
Confidence 378999999999999888888888864455555544
No 290
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=73.95 E-value=5.8 Score=30.36 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=27.1
Q ss_pred cCCCeEEEEcccccHHHHH-HHhhCCCCCEEEEEe
Q 044836 53 INAKNTMEIGVYTGYSLLV-TALAIPDDGKVQWMN 86 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~-la~~~~~~~~v~~ie 86 (90)
.++|++|-+|..+|++..+ +|+++..++.++.++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~ 73 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVF 73 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999998776 888884467777775
No 291
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=73.89 E-value=12 Score=27.79 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=36.1
Q ss_pred HHHHHHHh---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 45 FLSMLLKL---INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 45 ll~~l~~~---~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
||...+.. .+....+|.--|.|.-+-.+.+.+++.|+++++|.|+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~ 58 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDP 58 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCH
Confidence 44444443 3445889999999999999999999899999999987
No 292
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=73.68 E-value=5.6 Score=29.37 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=16.2
Q ss_pred CCCeEEEEcccccHHHHHHHhh
Q 044836 54 NAKNTMEIGVYTGYSLLVTALA 75 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~ 75 (90)
++-+|.|+||.+|-.|+.+.+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHHH
Confidence 4459999999999999987654
No 293
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=72.71 E-value=14 Score=26.07 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=25.5
Q ss_pred CCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 31 HPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 31 ~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
..|| ..|- -.++..+.+..+...|-|+|||-+-.| +.+++.-+|.+.|.
T Consensus 53 ~~WP---~nPv-d~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDL 101 (219)
T PF05148_consen 53 KKWP---VNPV-DVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDL 101 (219)
T ss_dssp CTSS---S-HH-HHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEES
T ss_pred hcCC---CCcH-HHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeec
Confidence 4677 2453 346666555555569999999987755 55554446777775
No 294
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=72.38 E-value=6.8 Score=29.51 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=22.8
Q ss_pred CeEEEEcccccH-HHHHHHhhCCCCCEEEEEecCCC
Q 044836 56 KNTMEIGVYTGY-SLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 56 ~~vLEiGt~~G~-sal~la~~~~~~~~v~~ie~~~~ 90 (90)
++|+-||.|.|. +++.-.+.++++.+|+-+|.+++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 479999987543 33333333445789999998753
No 295
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=72.27 E-value=8.6 Score=25.75 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=26.5
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+.++||..|++. |..++.+++..+ .+|+.++.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~ 167 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRS 167 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCC
Confidence 5678999999884 777888888765 678887765
No 296
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=72.07 E-value=11 Score=27.23 Aligned_cols=32 Identities=16% Similarity=-0.112 Sum_probs=27.8
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+||.-|||.|-.+.-+|.. +-.+.+.|.+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~ 88 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSY 88 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchH
Confidence 479999999999999999986 67888888763
No 297
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=71.66 E-value=24 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=25.7
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...++|+-+|+|. |-..+..++++ +++|+.+|.++
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCCh
Confidence 4688999999864 55555555555 47899998876
No 298
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=71.60 E-value=4.2 Score=31.92 Aligned_cols=34 Identities=26% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY 90 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~ 90 (90)
+|+|.-||. |.|++..++.+-+ +-.++++|.+++
T Consensus 1 ~krVaVIGa--G~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 1 AKRVAVIGA--GPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp --EEEEE----SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CCEEEEECc--cHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 479999998 5677776666554 458999998753
No 299
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=71.50 E-value=23 Score=26.26 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHH--HHHhhCCCCCEEEEEec
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIG-VYTGYSLL--VTALAIPDDGKVQWMNT 87 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal--~la~~~~~~~~v~~ie~ 87 (90)
.+++..++|..+++. .+.++-.| ||+|=+|+ .+...++++.+++++|-
T Consensus 163 ~~~~~~~~L~~~v~~--~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd 213 (340)
T TIGR03819 163 FPPGVARLLRAIVAA--RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVED 213 (340)
T ss_pred CCHHHHHHHHHHHhC--CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECC
Confidence 346778888877653 35777776 89998774 34455676777888774
No 300
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.48 E-value=7.2 Score=27.59 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=30.0
Q ss_pred HHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 49 LLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 49 l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.....+++||-+|..- .+.+.|+.+.++.+|+.+|++|
T Consensus 39 ~~~~~E~~~vli~G~Yl--tG~~~a~~Ls~~~~vtv~Di~p 77 (254)
T COG4017 39 FLEGEEFKEVLIFGVYL--TGNYTAQMLSKADKVTVVDIHP 77 (254)
T ss_pred hhcccCcceEEEEEeee--hhHHHHHHhcccceEEEecCCH
Confidence 33445789999999753 4566777777789999999987
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=71.32 E-value=8.1 Score=27.08 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=25.9
Q ss_pred hcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 52 LINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.....+||..|+| .|..++.+|+..+ .+|++++.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s 198 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIK 198 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCC
Confidence 4566788888865 5788888888875 568877654
No 302
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=71.10 E-value=7.9 Score=29.13 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++....+|+-||+| |+.-+......| ++|.++|+|+
T Consensus 59 m~~g~ghrivtigSG-Gcn~L~ylsr~P--a~id~VDlN~ 95 (414)
T COG5379 59 MQLGIGHRIVTIGSG-GCNMLAYLSRAP--ARIDVVDLNP 95 (414)
T ss_pred HhcCCCcEEEEecCC-cchHHHHhhcCC--ceeEEEeCCH
Confidence 455677899999987 554444444545 7899999986
No 303
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=70.90 E-value=16 Score=27.47 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
..-+..++....+++|+-||. |+.++-+|..+.. +.+|+-++..+
T Consensus 136 ~~~l~~~l~~~~~~~vvViGg--G~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 136 TDAIDQFIKANQVDKALVVGA--GYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred HHHHHHHHhhcCCCEEEEECC--CHHHHHHHHHHHhCCCcEEEEeccc
Confidence 333333334456899999995 7899999988765 45888888653
No 304
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=70.58 E-value=4.5 Score=28.77 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=21.9
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|||.-+|-|-=++.+|.. +++|+++|.||
T Consensus 78 ~VLDaTaGLG~Da~vlA~~---G~~V~~lErsp 107 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL---GCKVTGLERSP 107 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH---T--EEEEE--H
T ss_pred EEEECCCcchHHHHHHHcc---CCeEEEEECCH
Confidence 8999999999999999964 57999999986
No 305
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=70.30 E-value=7.2 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=24.0
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+||-.| |+|+.+..+++.+-+.|+|+++|..
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~~g~V~~~~~~ 32 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAPLGNLIALDVH 32 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhccCCEEEeccc
Confidence 577777 6799999999888766688888753
No 306
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=70.22 E-value=19 Score=27.27 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHH--HHhhCCCCCEEEEEecC
Q 044836 37 FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLV--TALAIPDDGKVQWMNTN 88 (90)
Q Consensus 37 ~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~--la~~~~~~~~v~~ie~~ 88 (90)
..+++.+++|...++.. +.-++-=|||+|=.|+. ++...|.+-+|++||=.
T Consensus 157 t~~~~~a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDt 209 (355)
T COG4962 157 TMIRRAAKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDT 209 (355)
T ss_pred CcCHHHHHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeeh
Confidence 34588999998877665 33334445999988874 44455666799999843
No 307
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.08 E-value=7.8 Score=29.49 Aligned_cols=52 Identities=19% Similarity=0.063 Sum_probs=39.1
Q ss_pred ccccCCHHHHHHHHHHHHhcC---CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 34 NFMFSAPDEAQFLSMLLKLIN---AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 34 p~m~~~~~~~~ll~~l~~~~~---~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|.|....+.. -.+++..+ +++|+|-=+|||.=++..|...+.. +++.-|+||
T Consensus 32 P~m~~NRDls---V~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp 86 (380)
T COG1867 32 PAMEFNRDLS---VLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISP 86 (380)
T ss_pred chhhhccchh---HHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCH
Confidence 4555444422 22334444 9999999999999999999999854 999999986
No 308
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=69.97 E-value=8.4 Score=29.81 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=24.9
Q ss_pred CeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 56 KNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 56 ~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
++|+-||+| +|.+|.|..+...++..|+.+|.+++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r 36 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 468889987 47776666555554778999988653
No 309
>PRK08163 salicylate hydroxylase; Provisional
Probab=69.97 E-value=8.3 Score=28.11 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=26.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 467899999988777777666543 67888888654
No 310
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=69.63 E-value=8.5 Score=28.47 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=23.1
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.++|+-||.|. |.+++.-.+..+.+++|+-+|.++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 457899999874 344433333334467899888654
No 311
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=69.37 E-value=6.2 Score=31.42 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCeEEEEcccccHHHHHHHhhC-------CC----CCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAI-------PD----DGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~-------~~----~~~v~~ie~~~ 89 (90)
.=+|+|+|=|+|+..+...+.+ ++ .-+++++|..|
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 4599999999999999888766 21 13788998754
No 312
>PRK08328 hypothetical protein; Provisional
Probab=69.02 E-value=11 Score=26.25 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=24.1
Q ss_pred hcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 52 LINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..+.++|+-+|+|. |...+......+ -++++-+|.+
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D 60 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQ 60 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 34567899999984 444443333444 6899999865
No 313
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=69.02 E-value=28 Score=25.70 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEc-ccccHHHHH--HHhhCCCCCEEEEEec
Q 044836 42 EAQFLSMLLKLINAKNTMEIG-VYTGYSLLV--TALAIPDDGKVQWMNT 87 (90)
Q Consensus 42 ~~~ll~~l~~~~~~~~vLEiG-t~~G~sal~--la~~~~~~~~v~~ie~ 87 (90)
...||...++ ..+.||-.| ||+|=+|+. |...+|++-+|+++|-
T Consensus 149 ~~~~L~~~v~--~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd 195 (332)
T PRK13900 149 IKEFLEHAVI--SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVED 195 (332)
T ss_pred HHHHHHHHHH--cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecC
Confidence 3445544333 456777776 899988875 4477888889999974
No 314
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=68.77 E-value=4.7 Score=28.44 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=21.2
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-++||||+-+.+....-.. --.|+.||+++
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns 82 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNS 82 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCC
Confidence 4999999987765544332 23499999875
No 315
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=68.04 E-value=9.4 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=23.1
Q ss_pred eEEEEccc-ccHHHHH-HHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVY-TGYSLLV-TALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~-~G~sal~-la~~~~~~~~v~~ie~~ 88 (90)
.|+-||.| +|.|+.+ |++.-| +.+|+-+|.+
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~-G~~V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRP-ALDVLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCC-CCeEEEEeCC
Confidence 68999988 7888884 555433 5789888864
No 316
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=67.94 E-value=31 Score=24.77 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCccc-----cCCHHHHHHHHHHHHh----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 20 CLKELRELTEKHPQNFM-----FSAPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 20 ~l~~l~~~a~~~~~p~m-----~~~~~~~~ll~~l~~~----~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+++++++..+.++-|.. ...+++. +.+.+.-. ...++||-+|-.=-.| +++|..-. ..+|+.+|+|+
T Consensus 2 ll~~~~~i~~~RP~~~~~~DQ~~~T~eT~-~~Ra~~~~~~gdL~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDe 77 (243)
T PF01861_consen 2 LLEKFSEIVKNRPEPDVELDQGYATPETT-LRRAALMAERGDLEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDE 77 (243)
T ss_dssp HHHHHHHHHTT-----GGGT---B-HHHH-HHHHHHHHHTT-STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-H
T ss_pred HHHHHHHHHHcCCCCccccccccccHHHH-HHHHHHHHhcCcccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCH
Confidence 45666666665554421 2334433 33322211 3689999999666554 44443222 47999999974
No 317
>PRK09273 hypothetical protein; Provisional
Probab=67.57 E-value=35 Score=23.97 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHhCCCccc-----------cCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCC
Q 044836 16 REHECLKELRELTEKHPQNFM-----------FSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIP 77 (90)
Q Consensus 16 ~~~~~l~~l~~~a~~~~~p~m-----------~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~ 77 (90)
+..-+++.+.++.++.++.+. ..-|+.+..+..++...... .--++||||......|...|
T Consensus 14 kn~~i~~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~d-~GIliCGTGiG~siAANK~p 85 (211)
T PRK09273 14 KNAIIYEALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAVD-FVVTGCGTGQGAMLALNSFP 85 (211)
T ss_pred hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCCC-EEEEEcCcHHHHHHHHhcCC
Confidence 455677888877776554322 12345666666655544444 45678999997777777776
No 318
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=67.32 E-value=9.9 Score=26.57 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=22.3
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|+-||.|.+.++++++.+-. +-+|+-+|.++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA-GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc-ccccccchhcc
Confidence 588999987777776666543 56899999765
No 319
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.13 E-value=8.7 Score=29.01 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++..++.+|--+|.| .|.+.+.-|++.+ .++|++||+|+
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~ 227 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINP 227 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCH
Confidence 677788999999975 4777777777766 78999999986
No 320
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=66.91 E-value=8.3 Score=26.73 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=26.4
Q ss_pred eEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
+||-.|. +|+.+..+++.+-+ +-+|++++..+
T Consensus 2 ~ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 2 RILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred eEEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3788887 99999999999986 46899988653
No 321
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=66.63 E-value=9.3 Score=29.11 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=25.9
Q ss_pred CeEEEEc-cc-ccHHHHHHHhhCCCCCEEEEE
Q 044836 56 KNTMEIG-VY-TGYSLLVTALAIPDDGKVQWM 85 (90)
Q Consensus 56 ~~vLEiG-t~-~G~sal~la~~~~~~~~v~~i 85 (90)
++|.-+| || .|.+++-..+..|+.-+|+++
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaL 33 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVAL 33 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEE
Confidence 6888999 88 899999988888877788877
No 322
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=66.44 E-value=9.4 Score=27.64 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=25.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEec
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNT 87 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~ 87 (90)
..++||-.| |+|+.+.++++.+-+ +-+|+++|.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 447888777 579999999998865 348988886
No 323
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=66.23 E-value=15 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=23.7
Q ss_pred hcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 52 LINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..+.++|+-||+|. |...+......+ -++++-+|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 44678999999973 443333333334 5799999865
No 324
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=66.22 E-value=5.2 Score=22.50 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=15.0
Q ss_pred ccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 65 TGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 65 ~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.|.+++..|..+.+ +-+|+-+|.++
T Consensus 4 aG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 4 AGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred eCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 35555555554443 46899998765
No 325
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=66.02 E-value=26 Score=25.79 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHH----HHhcCCCeEEEEcccccHHHHHHHhhCCCC---CEEEEEecCC
Q 044836 38 SAPDEAQFLSML----LKLINAKNTMEIGVYTGYSLLVTALAIPDD---GKVQWMNTNL 89 (90)
Q Consensus 38 ~~~~~~~ll~~l----~~~~~~~~vLEiGt~~G~sal~la~~~~~~---~~v~~ie~~~ 89 (90)
+...++++|+.. ++..++-..+|+|.|+---|..+..++... .+.+.||++.
T Consensus 58 pTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a 116 (321)
T COG4301 58 PTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSA 116 (321)
T ss_pred CchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccH
Confidence 345667777754 456789999999999999999999998752 5888888863
No 326
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=65.78 E-value=10 Score=25.40 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=36.9
Q ss_pred HHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHHHHHh
Q 044836 26 ELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG-VYTGYSLLVTAL 74 (90)
Q Consensus 26 ~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal~la~ 74 (90)
+.-++.+.+++.++...+.-+..|....+.+.++=+| +|.|=|++.=+.
T Consensus 6 ~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L 55 (161)
T PF03193_consen 6 EQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINAL 55 (161)
T ss_dssp HHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHH
Confidence 3334567777766766777888888888889999999 899999986543
No 327
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=65.69 E-value=32 Score=25.49 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHHHHH--hhC---CCCCEEEEEec
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIG-VYTGYSLLVTA--LAI---PDDGKVQWMNT 87 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal~la--~~~---~~~~~v~~ie~ 87 (90)
.++++.++|..+++. .+.||-.| ||+|=+|+.=| ..+ +++-+++++|-
T Consensus 129 ~~~~~~~~L~~~v~~--~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd 182 (323)
T PRK13833 129 MTEAQASVIRSAIDS--RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED 182 (323)
T ss_pred CCHHHHHHHHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 346778888887774 45677665 89998887533 333 44678999984
No 328
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=65.64 E-value=9.8 Score=27.67 Aligned_cols=35 Identities=17% Similarity=-0.037 Sum_probs=25.2
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
..+++|+-||.| +.++..|..+.. +.+|+.+|.++
T Consensus 16 ~~~~~VvIIG~G--~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 16 PTGKKVAIIGAG--PAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCCCEEEEECcC--HHHHHHHHHHHHCCCcEEEEeCCC
Confidence 357799999996 666666665543 46888888764
No 329
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=65.63 E-value=5.7 Score=30.05 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=27.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+...++++|||.|.=.+-+-++ + -+.++++||.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-g-I~~~igiDIAe 150 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-G-IGEYIGIDIAE 150 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-c-ccceEeeehhh
Confidence 57789999999999988877665 2 47899999853
No 330
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=65.57 E-value=1.2 Score=34.41 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 38 SAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..|+.+.++.......+.+.||++||..+-.|+..|..+.++ |-++|+|
T Consensus 65 v~p~~~~vvfr~~~~e~~rlilQ~gT~sa~lA~e~A~lv~nD--vsgidiN 113 (477)
T KOG2334|consen 65 VDPSDSTVVFRTCPAENSRLILQIGTASAELALEAAKLVDND--VSGIDIN 113 (477)
T ss_pred ecCCcceEEEEechhhcCeEEEEecCCcHHHHHHHHHHhhcc--ccccccc
Confidence 455666666666666677999999999999999999988753 4455544
No 331
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=65.39 E-value=10 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=26.9
Q ss_pred hcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+.++||-+|+|. |..++.+|++.+ .+|+.++.++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~ 200 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDP 200 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCH
Confidence 35678999999854 777788888875 5788887653
No 332
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.04 E-value=2 Score=29.01 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=19.1
Q ss_pred eEEEEcccccHHHHHHHhhCCCC-CEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDD-GKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~-~~v~~ie~~~ 89 (90)
+|--||. ||.++-+|..+-+. -+|+++|+|+
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCCh
Confidence 4555654 77777777666654 5999999985
No 333
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=65.00 E-value=9.8 Score=27.90 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=25.7
Q ss_pred CCCeEEEEc-ccccHHHHHHHhhCCCCCEEEEEec
Q 044836 54 NAKNTMEIG-VYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 54 ~~~~vLEiG-t~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
.++-|+-+| ||+|=|++.+.-+-. ++.|+++|.
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS 36 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS 36 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence 345677788 899999888777655 689999884
No 334
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=65.00 E-value=14 Score=26.87 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=26.5
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+....++||-.|+| .|..++.+|++++ ..+|+++|.++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~ 220 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINP 220 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence 34567899999864 4666777888775 33788887653
No 335
>PRK06847 hypothetical protein; Provisional
Probab=64.70 E-value=12 Score=27.02 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=24.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.++|+-||.|.+..+++++.+-. +-+|+-+|.++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 467899999877665555554432 56888888654
No 336
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.48 E-value=14 Score=28.32 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHh----cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 46 LSMLLKL----INAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 46 l~~l~~~----~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..+.+. ...++|+-+|+|. |...+..+++++ ++|+.+|+++
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~ 235 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDP 235 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCh
Confidence 3444454 3688999999974 666666667665 5899899886
No 337
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=63.86 E-value=9.2 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEe
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDD-GKVQWMN 86 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~-~~v~~ie 86 (90)
..+|+|+.||+ |.|+..++..+-+. ++|+..=
T Consensus 173 ~~GKrV~VIG~--GaSA~di~~~l~~~ga~vt~~q 205 (443)
T COG2072 173 LRGKRVLVIGA--GASAVDIAPELAEVGASVTLSQ 205 (443)
T ss_pred cCCCeEEEECC--CccHHHHHHHHHhcCCeeEEEe
Confidence 47899999998 77888888887764 6776543
No 338
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=63.47 E-value=33 Score=24.78 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred CCCeEEEEc-ccccHHHH--HHHhhCCCCCEEEEEe
Q 044836 54 NAKNTMEIG-VYTGYSLL--VTALAIPDDGKVQWMN 86 (90)
Q Consensus 54 ~~~~vLEiG-t~~G~sal--~la~~~~~~~~v~~ie 86 (90)
..+.++-.| +|+|=+|+ .+...+|++.+++++|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 566888887 89998886 4555677777788887
No 339
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=62.50 E-value=17 Score=28.38 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=25.1
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
...++|+-||.| .|.+++..+... +.+|+.+|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 457899999998 566666666654 4578888854
No 340
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=62.41 E-value=26 Score=23.01 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 40 PDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 40 ~~~~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+--.+|+..+++.. +...|||.=+|+|. |+..|..++ -+.+++|+++
T Consensus 175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGT-T~~aa~~l~--R~~ig~E~~~ 223 (231)
T PF01555_consen 175 QKPVELIERLIKASTNPGDIVLDPFAGSGT-TAVAAEELG--RRYIGIEIDE 223 (231)
T ss_dssp -S-HHHHHHHHHHHS-TT-EEEETT-TTTH-HHHHHHHTT---EEEEEESSH
T ss_pred cCCHHHHHHHHHhhhccceeeehhhhccCh-HHHHHHHcC--CeEEEEeCCH
Confidence 44456788777764 56799999999997 555555554 6799999986
No 341
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=62.21 E-value=15 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=21.0
Q ss_pred CeEEEEccc-ccHHHH-HHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVY-TGYSLL-VTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~-~G~sal-~la~~~~~~~~v~~ie~~~ 89 (90)
++|+-||.| +|.++. .|++. +.+|+.+|.++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~---g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR---GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 478999987 566555 33332 56899999763
No 342
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=61.85 E-value=20 Score=25.08 Aligned_cols=38 Identities=16% Similarity=-0.076 Sum_probs=28.1
Q ss_pred HHHhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 49 LLKLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 49 l~~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..+..+.++||-.| .+.|..++.+|+..+ .+|++++.+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s 177 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGS 177 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCC
Confidence 34556778999988 577888888999875 578776643
No 343
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=61.53 E-value=18 Score=26.18 Aligned_cols=37 Identities=8% Similarity=-0.197 Sum_probs=27.9
Q ss_pred HHhcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIGV--YTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiGt--~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+.++||-.|+ +.|..++.+|++.+ .+|++++.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~ 192 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGS 192 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCC
Confidence 34566789999986 57888888999875 578777654
No 344
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=61.20 E-value=17 Score=26.83 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=19.4
Q ss_pred CeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++|+-||.| +|.++.+..+..+.+-+|+-+|-++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 468889886 4444444443322123688887654
No 345
>PRK07236 hypothetical protein; Provisional
Probab=60.89 E-value=17 Score=26.66 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=24.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.+|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 467899999977666555555433 56888888754
No 346
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=60.88 E-value=17 Score=29.70 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=27.7
Q ss_pred HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
...+..+||-||+|+ |...+....+.+ -++|+-+|.+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~G-Vg~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWG-VRHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcC-CCeEEEEcCC
Confidence 445678999999997 665555555666 6899999865
No 347
>PRK07877 hypothetical protein; Provisional
Probab=60.78 E-value=14 Score=30.29 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDD-GKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~-~~v~~ie~~~ 89 (90)
..+..+|+-+|+|.|...+......+ - |+++-+|.|.
T Consensus 104 ~L~~~~V~IvG~GlGs~~a~~LaraG-vvG~l~lvD~D~ 141 (722)
T PRK07877 104 RLGRLRIGVVGLSVGHAIAHTLAAEG-LCGELRLADFDT 141 (722)
T ss_pred HHhcCCEEEEEecHHHHHHHHHHHcc-CCCeEEEEcCCE
Confidence 45678999999986654444333333 3 7999998763
No 348
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=60.67 E-value=21 Score=28.99 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEEcccccHHHHHHHh
Q 044836 40 PDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLVTAL 74 (90)
Q Consensus 40 ~~~~~ll~~l~~~-~~~~~vLEiGt~~G~sal~la~ 74 (90)
+.-++-+-.++.- .+...++|-+||+|...+-.|.
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHH
Confidence 3333333344444 3467999999999988776655
No 349
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=60.56 E-value=4.6 Score=24.30 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=20.9
Q ss_pred ccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836 63 VYTGYSLLVTALAIPDDG-KVQWMNTNL 89 (90)
Q Consensus 63 t~~G~sal~la~~~~~~~-~v~~ie~~~ 89 (90)
||.|-.+..+++.+.+++ +|+.+|.++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 344678889999888777 899999875
No 350
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=60.44 E-value=6.4 Score=30.26 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
+|--||| ||.++..+..+.+ +-.|+++|+++
T Consensus 2 kI~viGt--GYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGT--GYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECC--chHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4455665 7777666655554 35899999985
No 351
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=59.99 E-value=17 Score=26.20 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 46 LSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 46 l~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..++...+-+++|-+|..- .+.++|+.+...++|+-+|++|
T Consensus 33 i~~~le~~~~k~~lI~G~Yl--tG~~iA~~L~~~~eV~lvDI~p 74 (252)
T PF06690_consen 33 IKYWLEGEEFKQALIFGAYL--TGNFIASALSKKCEVTLVDIHP 74 (252)
T ss_pred HHHHhcccccceEEEEEEEe--ehHHHHHHhccCceEEEEeCcH
Confidence 33445555666999999753 5678899998877999999986
No 352
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=59.80 E-value=15 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=23.4
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
.++||-.| |+|+.+.++++.+-+ +.+|+.++.+
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCC
Confidence 46777777 567778888877754 4588887754
No 353
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=59.52 E-value=28 Score=23.77 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=27.0
Q ss_pred HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+..++|-.|+|. |..++.+|++++ ..+|++++.+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~ 131 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPD 131 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCC
Confidence 4455678999998754 777888888876 2248887754
No 354
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=58.87 E-value=53 Score=22.12 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=26.8
Q ss_pred HHHHHHHhcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEec
Q 044836 45 FLSMLLKLIN--AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 45 ll~~l~~~~~--~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~ 87 (90)
.|...+.... +--|||+|-|-|-.==.|-+.+| +-+|+.+|.
T Consensus 17 ~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR 60 (160)
T PF12692_consen 17 CLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEES
T ss_pred HHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEee
Confidence 4444444332 45799999999999999999999 789999985
No 355
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=58.83 E-value=42 Score=23.07 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH-hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 41 DEAQFLSMLLK-LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 41 ~~~~ll~~l~~-~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
--..++..+.. .....++||+=.|+|..++--++. -..+++.||.|.
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~ 76 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDR 76 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCH
Confidence 34456666666 488999999999999999876665 146899999874
No 356
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.65 E-value=13 Score=26.88 Aligned_cols=34 Identities=15% Similarity=-0.010 Sum_probs=28.3
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEe
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDD-GKVQWMN 86 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~-~~v~~ie 86 (90)
.+++.||-.||..|..+-.+|+.+..+ ..|++.-
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATA 39 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEc
Confidence 478999999999999999999988764 4777654
No 357
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=58.64 E-value=18 Score=28.55 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=27.8
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++.+|+-+|+| .|..++.+++.++ ++|+.+|.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~ 197 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRP 197 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 367899999987 4688888888876 5688888764
No 358
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=58.55 E-value=15 Score=23.04 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=23.6
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCC--CEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDD--GKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~--~~v~~ie~~ 88 (90)
.+.++|+-+|+ |..+..++..+... .+|+.+|.+
T Consensus 17 ~~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 35689999998 56677777666543 467777765
No 359
>PRK06753 hypothetical protein; Provisional
Probab=58.45 E-value=19 Score=26.02 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=23.0
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|+-||.|.+.++++++.+-. +-+++-+|.++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 688899987777766665543 56788888654
No 360
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.24 E-value=22 Score=26.82 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCeEEEEc-ccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIG-VYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiG-t~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.++|+-|| .++|.|++.+......+.+|+..|.++
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE 42 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 36788888 568999998888765236799988654
No 361
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.85 E-value=28 Score=24.86 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
....+.++||-.|+| .|..++.+|+..+ ..++++++.+
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~ 200 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSR 200 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 344567889988865 5677778888876 3468887754
No 362
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.80 E-value=19 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.000 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC----CCEEEEEe
Q 044836 45 FLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD----DGKVQWMN 86 (90)
Q Consensus 45 ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~----~~~v~~ie 86 (90)
+|+.++-..++-.|+.=+||+|-||-..+..--. -|+|++||
T Consensus 118 vlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIE 163 (375)
T COG5008 118 VLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIE 163 (375)
T ss_pred HHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEec
Confidence 5666666666666666669999998766653211 48999997
No 363
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=57.78 E-value=43 Score=24.88 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 43 AQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
+.-+...++...+++|+-||. |++++-+|..+.. +.+|+-++..+
T Consensus 125 ~~~~~~~l~~~~~~~vvViGg--G~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 125 TDAIKQYIDKNKVENVVIIGG--GYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred HHHHHHHHhhcCCCeEEEECC--CHHHHHHHHHHHhCCCcEEEEECCc
Confidence 333444444456889999975 5777777777664 45788777543
No 364
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=57.42 E-value=22 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=16.8
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 58 TMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 58 vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
++-||+|+|-+.++--.+-..+.+|.-+|.-
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG 33 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEAGNKKVLVLEAG 33 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTSTTS-EEEEESS
T ss_pred EEEECcCHHHHHHHHHHhhCCCCcEEEEEcc
Confidence 5778887776654433332213488888853
No 365
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=57.19 E-value=33 Score=21.34 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=24.2
Q ss_pred cCCCeEEEEcccccHH-HHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYS-LLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~s-al~la~~~~~~~~v~~ie~~~ 89 (90)
.++..||-|||-.+.. +.......+++.+++-||.++
T Consensus 76 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~ 113 (137)
T PF00205_consen 76 EQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDP 113 (137)
T ss_dssp HHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSG
T ss_pred cCCCEEEEECCCCccccccccccccCCCCEEEEEECCH
Confidence 4599999999866552 221222344345999999886
No 366
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.13 E-value=16 Score=27.09 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCeEEEEcccccHH
Q 044836 44 QFLSMLLKLINAKNTMEIGVYTGYS 68 (90)
Q Consensus 44 ~ll~~l~~~~~~~~vLEiGt~~G~s 68 (90)
.||..-.+--+|-+++|||...|..
T Consensus 130 gll~va~q~~~Pl~l~EiGsSaGLN 154 (350)
T COG4427 130 GLLIVALQFGKPLVLSEIGSSAGLN 154 (350)
T ss_pred HHHHHHHhcCCCeEEEecccccccc
Confidence 3444433445788999999998863
No 367
>PLN02852 ferredoxin-NADP+ reductase
Probab=57.12 E-value=23 Score=27.64 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+++|.-||.|. |.++...+.....+.+|+-+|..+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 477999999973 444443332111378999999765
No 368
>PRK06475 salicylate hydroxylase; Provisional
Probab=56.97 E-value=18 Score=26.65 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=24.2
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6899999988877777666533 56788888653
No 369
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=56.79 E-value=21 Score=27.74 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=31.3
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++++||-+|-|-|.....+.+. |.-++|+-+|.||
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP 323 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDP 323 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCH
Confidence 357899999999999988887764 5578999999987
No 370
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=56.68 E-value=29 Score=20.64 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=31.6
Q ss_pred hHHHHHHhhcCCCCChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEE--ccccc
Q 044836 3 NISQYILETTVYPREHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEI--GVYTG 66 (90)
Q Consensus 3 ~~~~Yi~~~~~~~~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEi--Gt~~G 66 (90)
.|.+|+..+.. ..+.+.+...+.| .|-.-.+|..+++.-+..+|.+- ||++|
T Consensus 6 qlRd~l~~~gr--------~s~~~Ls~~~~~p----~~~VeaMLe~l~~kGkverv~~~~~gC~sG 59 (78)
T PRK15431 6 QVRDLLALRGR--------MEAAQISQTLNTP----QPMINAMLQQLESMGKAVRIQEEPDGCLSG 59 (78)
T ss_pred HHHHHHHHcCc--------ccHHHHHHHHCcC----HHHHHHHHHHHHHCCCeEeeccCCCCCCCC
Confidence 35566665442 2233444444333 35566788888888888888745 67766
No 371
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=56.17 E-value=56 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.8
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIP 77 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~ 77 (90)
+++.+||+||=|.|...-.+-++-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p 124 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP 124 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC
Confidence 7899999999999998888777755
No 372
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=56.11 E-value=17 Score=27.53 Aligned_cols=36 Identities=22% Similarity=0.093 Sum_probs=25.0
Q ss_pred hcCCCeEEEEcc-cccHHH-HHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGV-YTGYSL-LVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt-~~G~sa-l~la~~~~~~~~v~~ie~~~ 89 (90)
..+.++|+-||- ++|.|+ +.+.... +.+|+..|.++
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~ 41 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKE 41 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCC
Confidence 456678999995 488884 4454443 57899998754
No 373
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=55.97 E-value=18 Score=27.82 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=24.4
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.+.++|.-||.| .+++..|..+.+ +-+++.+|.++
T Consensus 8 ~~~~~VaIIGAG--~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAG--AAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCc--HHHHHHHHHHHhcCCeEEEEecCC
Confidence 456899999995 455555655544 45899998754
No 374
>PRK07208 hypothetical protein; Provisional
Probab=55.94 E-value=15 Score=27.67 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=22.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.+.++|+-||.| .+++..|..+.. +-+|+.+|.++
T Consensus 2 ~~~~~vvIiGaG--isGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 2 TNKKSVVIIGAG--PAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCCCcEEEECcC--HHHHHHHHHHHHCCCcEEEEecCC
Confidence 467789999985 455555544443 45788777654
No 375
>PRK06179 short chain dehydrogenase; Provisional
Probab=55.83 E-value=19 Score=24.68 Aligned_cols=34 Identities=21% Similarity=0.072 Sum_probs=23.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
+.++||-.|+ +|..+..+++.+-. +.+|+.++.+
T Consensus 3 ~~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 3 NSKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567888885 45567777776554 5678877765
No 376
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=55.28 E-value=23 Score=25.37 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.++||-+|+| .|..++.+|++++ ..+|+++|.++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~ 204 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSP 204 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCH
Confidence 56789988854 5666777788765 34788887654
No 377
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.92 E-value=19 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=23.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
-|+.||||.--|-++-|..= .+..|.-+|.|+|
T Consensus 10 DvVViGTGlpESilAAAcSr-sG~sVLHlDsn~y 42 (547)
T KOG4405|consen 10 DVVVIGTGLPESILAAACSR-SGSSVLHLDSNEY 42 (547)
T ss_pred cEEEEcCCCcHHHHHHHhhh-cCCceEeccCccc
Confidence 46788987766655555442 2679999999998
No 378
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=54.85 E-value=34 Score=24.12 Aligned_cols=37 Identities=14% Similarity=-0.118 Sum_probs=27.4
Q ss_pred HHhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+..+||-.| .+.|..++.+|+..+ .++++++.+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s 172 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGS 172 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCC
Confidence 4456778999998 468888888998865 577766643
No 379
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=54.76 E-value=29 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=25.0
Q ss_pred hcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+.++||-.|+| .|..++.+|++.+ ..+|+++|.++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~ 211 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDD 211 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence 4567899999863 3555677777764 23588887653
No 380
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=54.74 E-value=19 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=20.6
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-||.||.|.|.++..-|.. .+.+|+.+|..+
T Consensus 9 DVvVVG~GaGl~aA~~aa~--~G~~V~vlEk~~ 39 (513)
T PRK12837 9 DVLVAGSGGGVAGAYTAAR--EGLSVALVEATD 39 (513)
T ss_pred CEEEECchHHHHHHHHHHH--CCCcEEEEecCC
Confidence 5888999866555544433 257888888653
No 381
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=54.54 E-value=25 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.028 Sum_probs=22.5
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 58 TMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 58 vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
|+-||.|.+.++++++.+-. +-+|+-+|..+
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-GLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence 67788887777776665543 67888888764
No 382
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=53.88 E-value=21 Score=27.26 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++.+|=-||. ||-++-+|..+.++-+|+++|+|+
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~ 38 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNK 38 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCH
Confidence 4567777866 888998888887667999999985
No 383
>PRK12831 putative oxidoreductase; Provisional
Probab=53.83 E-value=30 Score=26.49 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=24.4
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..++|+-||.| .|.++.+.+... +.+|+.+|.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~--G~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM--GYDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEecC
Confidence 46799999998 677776666554 4688888854
No 384
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=53.76 E-value=18 Score=26.45 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=21.6
Q ss_pred CeEEEEcccccHHHHHHHhhCC---CCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIP---DDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~---~~~~v~~ie~~~ 89 (90)
++|+-||.|.+ ++.+|+.+. ++++|+.++.++
T Consensus 3 ~~vvIiG~G~A--G~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFA--ARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHH--HHHHHHHHHhhCcCCCEEEEeCCC
Confidence 57899998654 444444443 368899888765
No 385
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=53.64 E-value=36 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhC
Q 044836 38 SAPDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAI 76 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~ 76 (90)
..|.|-+++..+.+.. +..-++|.+||+|=+...|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 3678888888776653 45578999999998876665553
No 386
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=53.64 E-value=36 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhC
Q 044836 38 SAPDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAI 76 (90)
Q Consensus 38 ~~~~~~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~ 76 (90)
..|.|-+++..+.+.. +..-++|.+||+|=+...|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 3678888888776653 45578999999998876665553
No 387
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=53.59 E-value=34 Score=24.67 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=23.3
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCC--CCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPD--DGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~--~~~v~~ie~~~ 89 (90)
...+..+|+-+|+|. .+.+.|+.+-. -++++-+|.+.
T Consensus 26 ~kL~~s~VlVvG~GG--VGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 26 QLFADAHICVVGIGG--VGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HHhcCCCEEEECcCH--HHHHHHHHHHHcCCCEEEEEeCCE
Confidence 344678999999863 33333333322 37999999763
No 388
>PRK08223 hypothetical protein; Validated
Probab=53.46 E-value=28 Score=25.48 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=25.2
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..+..+||-||+| .|...+....+.+ -|+++-+|.|.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~D~ 61 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADFDV 61 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 34567899999997 3444333333344 68999999763
No 389
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=53.37 E-value=6.2 Score=29.71 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=30.6
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
...++.+++++|||.|.....++.- . ..+++.++.++|
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f-~-~~~~~Gl~~n~~ 144 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF-K-KAGVVGLDNNAY 144 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh-c-cCCccCCCcCHH
Confidence 4456778999999999999999975 3 577888888765
No 390
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=53.36 E-value=76 Score=23.50 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCccccCCHHHHHHHHHHHHhc----CCC-----eEEEEc---------ccccHHHHHHHhhCCCCCEEE
Q 044836 22 KELRELTEKHPQNFMFSAPDEAQFLSMLLKLI----NAK-----NTMEIG---------VYTGYSLLVTALAIPDDGKVQ 83 (90)
Q Consensus 22 ~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~----~~~-----~vLEiG---------t~~G~sal~la~~~~~~~~v~ 83 (90)
..+.+.|+++++|.+.++..+..++..+.... .++ ..++|+ .|.|=|++++...-. +.+++
T Consensus 96 ~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~la~~~~iHg~~v~V~G~GvLi~G~SG~GKSelALeLi~r-Gh~LV 174 (308)
T PRK05428 96 PELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKLAPRTSVHGVLVDIYGIGVLITGESGIGKSETALELIKR-GHRLV 174 (308)
T ss_pred HHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHhhhcceeeeEEEEECCEEEEEEcCCCCCHHHHHHHHHHc-CCceE
Confidence 45677888899998777777777776554322 221 344444 789999888876543 44555
Q ss_pred EEe
Q 044836 84 WMN 86 (90)
Q Consensus 84 ~ie 86 (90)
+=|
T Consensus 175 aDD 177 (308)
T PRK05428 175 ADD 177 (308)
T ss_pred ecC
Confidence 544
No 391
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=53.34 E-value=22 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=20.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCCC-EEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDG-KVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~-~v~~ie~~~ 89 (90)
+|+-||.|.+..+++++.+-. ++ +|+-+|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCC
Confidence 688999976655555544321 33 788888653
No 392
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=53.24 E-value=29 Score=25.18 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=26.0
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
...+.++||-.|+| .|..++.+|++.+ ..++++++.+
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~ 220 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIV 220 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 34567888888864 4777777888876 3468887754
No 393
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=53.08 E-value=21 Score=29.04 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=27.5
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.++.+|+-||.|.+..+++++.+-. +-+|+-+|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecc
Confidence 4567999999988887777776654 6789988865
No 394
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=52.60 E-value=22 Score=26.45 Aligned_cols=37 Identities=19% Similarity=0.039 Sum_probs=26.8
Q ss_pred cCCCeEEEEc--ccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIG--VYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiG--t~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
....+|+-+| .+.|..++.+|++++. ..+|+++|.++
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~ 213 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVND 213 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCH
Confidence 4457899997 4588888889988752 24788887653
No 395
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=52.17 E-value=27 Score=27.28 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=27.5
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+.....-|+-||.|.+.+++.-+.+= ++-+|..||.|
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~k-dGRrVhVIERD 77 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAK-DGRRVHVIERD 77 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhh-CCcEEEEEecc
Confidence 34445569999999888887776653 36799999976
No 396
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=51.75 E-value=26 Score=26.51 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=21.3
Q ss_pred eEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|+-||.|. |+.+..-+... +.+|+-+|.++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~--g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN--GKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC--CCcEEEEECCc
Confidence 789999997 44444444432 57899999764
No 397
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=51.52 E-value=29 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=20.6
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|+-||.|.+..++++..+-. +.+|+-+|..+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-GLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 367788876655555544422 56888888764
No 398
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=51.40 E-value=17 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.7
Q ss_pred ccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 65 TGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 65 ~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
||-||-+|.+.++ .|+.+..|||
T Consensus 41 TGRSARmL~evlG---Diwvv~RNPy 63 (115)
T PF12447_consen 41 TGRSARMLFEVLG---DIWVVRRNPY 63 (115)
T ss_pred ccHHHHHHHHHhc---ceeeeecCch
Confidence 7999999999986 4999999998
No 399
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=51.39 E-value=30 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=24.5
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++||-+|+| .|..++.+|++.+ ..+|+++|.++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~ 155 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSP 155 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCH
Confidence 356789999863 5666677787765 33488877653
No 400
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=51.36 E-value=45 Score=23.56 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=26.4
Q ss_pred HHhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEec
Q 044836 50 LKLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNT 87 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~ 87 (90)
.+..+.++||..|++. |..++.+|+.++ .+++++..
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~ 191 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDI 191 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECC
Confidence 4456778999998763 778888898874 67776643
No 401
>PTZ00117 malate dehydrogenase; Provisional
Probab=51.32 E-value=39 Score=24.61 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=25.5
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+.++|.-||.|. |++...++..-+ -++|+-+|+++
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~-~~~l~L~Di~~ 39 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKN-LGDVVLYDVIK 39 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCC-CCeEEEEECCC
Confidence 3567999999998 777555444332 26799999875
No 402
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=51.31 E-value=25 Score=24.92 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=24.6
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+.++||-+|+| .|..++.+|++.+ ...|+++|.+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~ 178 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETN 178 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCC
Confidence 356789999954 5777788888876 3356677755
No 403
>PLN02268 probable polyamine oxidase
Probab=51.26 E-value=23 Score=26.30 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=18.8
Q ss_pred eEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
+|+-||.| .|++..|..|.. +-+|+-+|-+.
T Consensus 2 ~VvVIGaG--isGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 2 SVIVIGGG--IAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CEEEECCC--HHHHHHHHHHHhCCCeEEEEeCCC
Confidence 67888885 445555544443 34677777543
No 404
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=51.10 E-value=23 Score=27.06 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=26.6
Q ss_pred CCCeEEEEcccccHHHH--HHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLL--VTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal--~la~~~~~~~~v~~ie~~~ 89 (90)
+--+||.+|-|+|..++ .+.+.++ .+.|--+|..+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchh
Confidence 44589999999997654 4667777 68888888765
No 405
>PRK07904 short chain dehydrogenase; Provisional
Probab=51.05 E-value=24 Score=24.20 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=22.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCC-CC-CEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIP-DD-GKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~-~~-~~v~~ie~~~ 89 (90)
-++++||-.|+..|. +..+|+.+- .+ .+|+.++.++
T Consensus 6 ~~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~ 43 (253)
T PRK07904 6 GNPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPD 43 (253)
T ss_pred CCCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCc
Confidence 467788888875554 666666543 22 4777776653
No 406
>PRK07538 hypothetical protein; Provisional
Probab=51.05 E-value=27 Score=25.86 Aligned_cols=32 Identities=16% Similarity=-0.014 Sum_probs=23.3
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 688899988777777665533 56888888654
No 407
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=50.91 E-value=25 Score=27.71 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=22.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-|+-||.|.|.++..-|... +.+|..||..+
T Consensus 18 DvvvvG~G~G~~aA~~a~~~--G~~v~v~Ek~~ 48 (564)
T PRK12845 18 DLLVVGSGTGMAAALAAHEL--GLSVLIVEKSS 48 (564)
T ss_pred CEEEECCcHHHHHHHHHHHC--CCcEEEEecCC
Confidence 57889999877666666542 57899998753
No 408
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=50.88 E-value=19 Score=27.81 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=18.8
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 58 TMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 58 vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
|+-+|||---+-+..|.+.. +.+|.-+|.|+|
T Consensus 7 viI~GTGl~esila~als~~-GkkVLhiD~n~y 38 (438)
T PF00996_consen 7 VIILGTGLTESILAAALSRS-GKKVLHIDRNDY 38 (438)
T ss_dssp EEEE--SHHHHHHHHHHHHT-T--EEEE-SSSS
T ss_pred EEEECCCcHHHHHHHHHHhc-CCEEEecCCCCC
Confidence 67778876665555555444 789999999987
No 409
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=50.81 E-value=30 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=25.8
Q ss_pred HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+.++||..|+| .|..++.+|+..+ ..++++++.+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~ 201 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSN 201 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence 344567788887754 5777788888875 3477777643
No 410
>PRK08275 putative oxidoreductase; Provisional
Probab=50.70 E-value=28 Score=27.20 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=19.1
Q ss_pred eEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-||-||.|. |.+|..-|...+++.+|+.+|..+
T Consensus 11 DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~ 44 (554)
T PRK08275 11 DILVIGGGTAGPMAAIKAKERNPALRVLLLEKAN 44 (554)
T ss_pred CEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 478888875 444444333323346788887543
No 411
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=50.68 E-value=29 Score=25.19 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=24.3
Q ss_pred hcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 52 LINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
....++||-.|+| .|..++.+|+..+ ..+|+++|.++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~ 226 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNE 226 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCH
Confidence 3456788888853 3555666777664 23688887654
No 412
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=50.52 E-value=17 Score=26.39 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=26.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...-|.|||.|.|..|-.+..+- ..++..+|+|+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~ 83 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDT 83 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeecc
Confidence 34578999999999999988762 45777777664
No 413
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=50.50 E-value=36 Score=24.69 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=26.2
Q ss_pred HhcCCCeEEEEcc-cccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGV-YTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt-~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+....++||-+|+ +.|..++.+|++++ ..+|++++.++
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~ 221 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINP 221 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCH
Confidence 3456789999885 34566677788765 33788887653
No 414
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=50.49 E-value=27 Score=24.67 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=20.6
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
.++||-.| |+|+.+..+++.+-. +.+|+.+..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcC
Confidence 46777777 567777777776654 3466555433
No 415
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=50.44 E-value=37 Score=23.07 Aligned_cols=37 Identities=14% Similarity=-0.039 Sum_probs=27.4
Q ss_pred HHhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+.++||-.| .+.|..++.+|++++ .+|+.++.+
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~ 170 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSS 170 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCC
Confidence 4455778999999 467888888888875 567776544
No 416
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=50.43 E-value=21 Score=25.32 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH----hcCCCeEEEEcccccHHHHHHHhhCCC-C-CEEEEEecC
Q 044836 41 DEAQFLSMLLK----LINAKNTMEIGVYTGYSLLVTALAIPD-D-GKVQWMNTN 88 (90)
Q Consensus 41 ~~~~ll~~l~~----~~~~~~vLEiGt~~G~sal~la~~~~~-~-~~v~~ie~~ 88 (90)
+..-++..+.+ ..+.++||-+|+ |..+..++.++.. + .+|+.++.+
T Consensus 105 D~~G~~~~l~~~~~~~~~~k~vlVlGa--Gg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 105 DGIGFVRALEERLGVDLKGKRILILGA--GGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred cHHHHHHHHHhccCCCCCCCEEEEEcC--cHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 44446666553 245789999998 5556666666544 3 478887765
No 417
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=50.31 E-value=32 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=22.9
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 53 INAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+.++|+-+|+|. |...+......+ -++++-+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 4677899999973 433333333334 5789999876
No 418
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=50.29 E-value=19 Score=30.59 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=0.0
Q ss_pred cCCCeEEEEccc---cc------HHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVY---TG------YSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~---~G------~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
...++||-||+| .| ||+..+.+++.+ +.+++.++.++
T Consensus 4 ~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np 50 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNP 50 (1050)
T ss_pred CCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecch
No 419
>PRK00098 GTPase RsgA; Reviewed
Probab=50.16 E-value=32 Score=24.74 Aligned_cols=47 Identities=23% Similarity=0.171 Sum_probs=32.8
Q ss_pred HHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEc-ccccHHHHHH
Q 044836 26 ELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIG-VYTGYSLLVT 72 (90)
Q Consensus 26 ~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiG-t~~G~sal~l 72 (90)
+..+..+++.+.++...+.-+..+......+.+.-+| +|.|=||+.=
T Consensus 135 ~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk~~~~~G~sgvGKStlin 182 (298)
T PRK00098 135 ALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKSTLLN 182 (298)
T ss_pred HHHHHCCCeEEEEeCCCCccHHHHHhhccCceEEEECCCCCCHHHHHH
Confidence 3334456665555555555666667777788999999 9999998753
No 420
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=49.96 E-value=43 Score=21.70 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=22.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDD-GKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~-~~v~~ie~~ 88 (90)
.+.++|+-||. |-||.-++..+-+. .+|+-+=..
T Consensus 165 ~~~k~V~VVG~--G~SA~d~a~~l~~~g~~V~~~~R~ 199 (203)
T PF13738_consen 165 FKGKRVVVVGG--GNSAVDIAYALAKAGKSVTLVTRS 199 (203)
T ss_dssp CTTSEEEEE----SHHHHHHHHHHTTTCSEEEEEESS
T ss_pred cCCCcEEEEcC--hHHHHHHHHHHHhhCCEEEEEecC
Confidence 46799999998 56888888877764 466665443
No 421
>PRK11524 putative methyltransferase; Provisional
Probab=49.72 E-value=52 Score=23.42 Aligned_cols=44 Identities=11% Similarity=-0.099 Sum_probs=33.5
Q ss_pred HHHHHHHHHhc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKLI--NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~~--~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..|+..+++.. ....|||-=+|+|- |+..|+.+ +-+.+++|+++
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGT-T~~AA~~l--gR~~IG~Ei~~ 240 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFT-TGAVAKAS--GRKFIGIEINS 240 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcH-HHHHHHHc--CCCEEEEeCCH
Confidence 56888888774 57799999999986 44455555 46799999886
No 422
>PRK07774 short chain dehydrogenase; Provisional
Probab=49.54 E-value=27 Score=23.44 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=21.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
..+++|-.| ++|+.+..+++.+-. +.+|+.++.+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 346777777 445556666666543 4577777654
No 423
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=49.37 E-value=28 Score=24.43 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=22.2
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
.++||-.|. +|+.+..+++.+-+ +.+|+++..+
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 467776664 68888888877754 3467666544
No 424
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=49.24 E-value=57 Score=21.71 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=21.6
Q ss_pred hcCCCeEEEEccc-c-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 52 LINAKNTMEIGVY-T-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~-~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
....++||-||.| + |-......... +.+|+.++.+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECC
Confidence 3578999999997 2 55333333332 3478777654
No 425
>PRK13699 putative methylase; Provisional
Probab=49.04 E-value=58 Score=22.62 Aligned_cols=44 Identities=7% Similarity=-0.082 Sum_probs=31.2
Q ss_pred HHHHHHHHHh--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 43 AQFLSMLLKL--INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 43 ~~ll~~l~~~--~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++..+++. .++..|||-=+|+|-++++.. .+ +-+.+++|+++
T Consensus 150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~-~~--~r~~~g~e~~~ 195 (227)
T PRK13699 150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAAL-QS--GRRYIGIELLE 195 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHH-Hc--CCCEEEEecCH
Confidence 4567766654 467799999999987555444 44 45788999886
No 426
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=48.99 E-value=24 Score=27.32 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=29.5
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.-|++++-||. ||.++-+|..+.. +.+||-+|..+
T Consensus 171 ~lP~~lvIiGg--G~IGlE~a~~~~~LG~~VTiie~~~ 206 (454)
T COG1249 171 ELPKSLVIVGG--GYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred cCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEecCC
Confidence 56999999998 8888988888776 67999998764
No 427
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=48.97 E-value=27 Score=26.57 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=25.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEec
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNT 87 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~ 87 (90)
++++||-.| |+|+.+.++++.+-+ +-+|+++|.
T Consensus 119 ~~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 456888777 579999999998765 448998885
No 428
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=48.81 E-value=35 Score=24.76 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+..+.++||-+|+| .|..++.+|++++ ..+|++++.+
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~ 218 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDIN 218 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 34567899998863 4556667777765 3378888765
No 429
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=48.72 E-value=26 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.|++++-||. |+.++-+|..+.. +.+|+-++..+
T Consensus 168 ~~k~vvVIGg--G~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 168 LPESLVIVGG--GYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred cCCcEEEECC--CHHHHHHHHHHHhCCCcEEEEEccC
Confidence 4899999988 5888888887765 56898888654
No 430
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.67 E-value=41 Score=23.12 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=26.6
Q ss_pred HhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+..+.++||-.| .+.|..++.+|+..+ .+|+++..+
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~ 176 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRS 176 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCC
Confidence 345678999988 478888888998875 567766543
No 431
>PRK05868 hypothetical protein; Validated
Probab=48.66 E-value=29 Score=25.51 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=22.8
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH-GYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCC
Confidence 4688899887766666555432 56788888654
No 432
>PLN02740 Alcohol dehydrogenase-like
Probab=48.60 E-value=35 Score=24.96 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=26.0
Q ss_pred HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+.++||-+|+| .|..++.+|+..+ ..+|+++|.++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~ 233 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINP 233 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCCh
Confidence 345567899999864 4555666777765 23688887654
No 433
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=48.56 E-value=42 Score=23.87 Aligned_cols=37 Identities=11% Similarity=-0.165 Sum_probs=27.0
Q ss_pred HHhcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIGV--YTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiGt--~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..++++||-.|. +.|..++.+|+..+ .+|+++..+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~ 185 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGS 185 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCC
Confidence 44567889999985 67778888888875 567765543
No 434
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=48.54 E-value=29 Score=24.67 Aligned_cols=31 Identities=13% Similarity=-0.161 Sum_probs=24.7
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|+|+-||.|..++-+.++ + --.++++|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~ 32 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDK 32 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCH
Confidence 6899999999998888765 2 34678899875
No 435
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=48.33 E-value=37 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=25.3
Q ss_pred HHhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 50 LKLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+..+..+||-.|+| .|..++.+|++.+ ..+|++++.++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~ 222 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNP 222 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH
Confidence 345567899998853 3445566777665 33788887653
No 436
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=48.00 E-value=42 Score=23.84 Aligned_cols=34 Identities=12% Similarity=-0.040 Sum_probs=21.7
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.+||-+|.|++...+.-++..+.+-+|+++|.++
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCC
Confidence 4788889988873333333333246888888764
No 437
>PRK06175 L-aspartate oxidase; Provisional
Probab=47.94 E-value=31 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=20.9
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-||-||+|..-.+.++.. .++.+|+.+|..+
T Consensus 6 DVvVVG~G~AGl~AA~~a--~~G~~V~lleK~~ 36 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNL--RKDLKILMVSKGK 36 (433)
T ss_pred cEEEECchHHHHHHHHHh--ccCCCEEEEecCC
Confidence 488999986544444443 3478999998754
No 438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.84 E-value=30 Score=26.27 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=22.6
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
...++|+-||.| .+++.+|+.+.. +.+|+.+|.+
T Consensus 14 ~~~~~v~viG~G--~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLG--VSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEeCC
Confidence 357799999974 455555555543 5688888854
No 439
>PRK12829 short chain dehydrogenase; Provisional
Probab=47.78 E-value=50 Score=22.22 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=23.8
Q ss_pred HhcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 51 KLINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
...+.+++|-.|.. |..+..+++.+-+ +.+|+.++.+
T Consensus 7 ~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 7 KPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred hccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCC
Confidence 34567888888875 4446666665443 4577777764
No 440
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=47.63 E-value=49 Score=22.53 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=25.3
Q ss_pred HHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+.++|+-+|+|.=.|.+....+...-++++-+|.+
T Consensus 16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 16 VQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 344567899999997544444433333324689999977
No 441
>PRK09126 hypothetical protein; Provisional
Probab=47.55 E-value=31 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=23.7
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
-.|+-||.|.+.++++++.+-. +-+|+-+|..+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3588899988777777666543 56888888653
No 442
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=47.32 E-value=29 Score=26.38 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=26.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
..|++|+-||. |+.++-+|..+.. +.+|+-+|..
T Consensus 172 ~~~~~vvIIGg--G~ig~E~A~~l~~~G~~Vtlie~~ 206 (466)
T PRK06115 172 EVPKHLVVIGA--GVIGLELGSVWRRLGAQVTVVEYL 206 (466)
T ss_pred cCCCeEEEECC--CHHHHHHHHHHHHcCCeEEEEeCC
Confidence 35899999996 5788888877664 5688888754
No 443
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.21 E-value=30 Score=27.21 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=19.8
Q ss_pred eEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
-||-||.|. |.++..-|...+++.+|+-+|..
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~ 37 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKT 37 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 378888875 65555555433334578877764
No 444
>PRK14851 hypothetical protein; Provisional
Probab=46.99 E-value=35 Score=27.84 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=26.5
Q ss_pred hcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 52 LINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..+..+|+-+|+| .|...+......+ -|+++-+|.|
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD~D 76 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTG-IGRFHIADFD 76 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhC-CCeEEEEcCC
Confidence 3467899999998 6665555555555 6899999876
No 445
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=46.96 E-value=61 Score=25.82 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHHHHHHh-CCCccccCCHHHHHHHHHHHH--hcCCCeEEEEc-ccccHHHHH--HHhhCCC--CCEEEEEecC
Q 044836 22 KELRELTEK-HPQNFMFSAPDEAQFLSMLLK--LINAKNTMEIG-VYTGYSLLV--TALAIPD--DGKVQWMNTN 88 (90)
Q Consensus 22 ~~l~~~a~~-~~~p~m~~~~~~~~ll~~l~~--~~~~~~vLEiG-t~~G~sal~--la~~~~~--~~~v~~ie~~ 88 (90)
.++|+..++ ...|...+.|+..++|..+-. ..++..|+-+| +|+|=||+. +++.+.. +..++-+|.|
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D 430 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD 430 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc
Confidence 556666554 455667788998988877653 35666888889 899988875 5555552 3346666654
No 446
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=46.93 E-value=27 Score=26.01 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=25.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
...++||-+| ++|+.+..+++.+-+ +.+|+++..+
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 4556889888 688888888887653 4578877754
No 447
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=46.88 E-value=34 Score=24.66 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=23.7
Q ss_pred cCCCeEEEEccc-ccHHHHHHHhh-CCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVY-TGYSLLVTALA-IPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~-~G~sal~la~~-~~~~~~v~~ie~~~ 89 (90)
.+..+||-+|+| .|..++.+|+. .+ ..+|+++|.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~ 199 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQ 199 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcH
Confidence 457799999963 23334555665 33 56899998765
No 448
>PLN02240 UDP-glucose 4-epimerase
Probab=46.79 E-value=31 Score=24.57 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=21.1
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEe
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMN 86 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie 86 (90)
.++||-.| ++|+.+.++++.+-+ +.+|+.++
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEe
Confidence 46777776 567777777777653 34777775
No 449
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=46.57 E-value=44 Score=24.91 Aligned_cols=34 Identities=12% Similarity=-0.024 Sum_probs=20.3
Q ss_pred CeEEEEccc-ccHHHHHHHhhCCC--CCEEEEEecCC
Q 044836 56 KNTMEIGVY-TGYSLLVTALAIPD--DGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~-~G~sal~la~~~~~--~~~v~~ie~~~ 89 (90)
++|+-||.| +|.++.+......+ +-+|+-+|.++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 578999986 55555544443211 35677777553
No 450
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=46.49 E-value=37 Score=21.91 Aligned_cols=32 Identities=19% Similarity=0.056 Sum_probs=21.1
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|+-||.|.+..+.+...+ ..+.+++-+|.++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~-~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELA-RPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHH-HTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHh-cCCCeEEEEeccc
Confidence 5788888766555555444 2378888887653
No 451
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=46.43 E-value=35 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=21.0
Q ss_pred eEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+||-||+| .|...+......+ -++|+-+|.|
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCC
Confidence 58899986 5555444444444 6899998865
No 452
>PRK06223 malate dehydrogenase; Reviewed
Probab=46.33 E-value=46 Score=23.72 Aligned_cols=33 Identities=21% Similarity=0.085 Sum_probs=21.7
Q ss_pred CeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
++|--||+|. |...+......+ -++|+-+|+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~-~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKE-LGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEECCC
Confidence 5888999977 665444443322 13899999875
No 453
>PLN00016 RNA-binding protein; Provisional
Probab=46.28 E-value=19 Score=26.40 Aligned_cols=39 Identities=8% Similarity=0.058 Sum_probs=28.2
Q ss_pred HHhcCCCeEEEE---cccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 50 LKLINAKNTMEI---GVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEi---Gt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
......++||-+ |-|+|+.+.++++.+-+ +-+|+++..+
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 334456789998 23789999999888764 4488888765
No 454
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.28 E-value=43 Score=25.78 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=23.7
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 54 NAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..++|+-+|+|. |...+..++++ +.+|+.+|+++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCc
Confidence 788999999863 33334444444 46899999876
No 455
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=46.26 E-value=12 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.6
Q ss_pred CCCeEEEEcccccHHHHHHHhh
Q 044836 54 NAKNTMEIGVYTGYSLLVTALA 75 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~ 75 (90)
.|.++||+|.|-|-.|..++--
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~ 133 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT 133 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch
Confidence 5689999999999998887643
No 456
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=46.14 E-value=43 Score=24.30 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=24.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...|+-||.|...++++++.+-. +.+|+-+|.++
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 34699999987776666665533 67899998764
No 457
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=45.85 E-value=67 Score=23.92 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=28.8
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
..+|-+||||-||.|---+-.....|+ .-.|.-.|.++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~ 171 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSP 171 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCH
Confidence 347889999999999877777777774 35777777654
No 458
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=45.85 E-value=29 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=19.6
Q ss_pred CeEEEEcccccHHHHHHHhhCCC-------CCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPD-------DGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~-------~~~v~~ie~~~ 89 (90)
++|+.||.| .|++..|..+.. +.+|+-+|-++
T Consensus 2 ~~v~VIGaG--isGL~aA~~L~~~~~~~~~~~~V~vlEa~~ 40 (463)
T PRK12416 2 KTVVVIGGG--ITGLSTMFYLEKLKKDYNIDLNLILVEKEE 40 (463)
T ss_pred CeEEEECCC--HHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence 468999985 344444444432 24788888654
No 459
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=45.84 E-value=58 Score=23.34 Aligned_cols=37 Identities=19% Similarity=0.003 Sum_probs=25.2
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+..+.++||-.|+| .|..++.+|+..+ ++|++++.++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~ 199 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGA 199 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCCh
Confidence 34567799999953 4555666777764 5788887654
No 460
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=45.72 E-value=55 Score=23.17 Aligned_cols=32 Identities=9% Similarity=-0.051 Sum_probs=24.2
Q ss_pred CeEEEEcc--cccHHHHHHHhhCCCCCEEEEEecC
Q 044836 56 KNTMEIGV--YTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 56 ~~vLEiGt--~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
++||-.|. +.|..++.+|++.+ ..+|++++.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s 189 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGS 189 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 79999984 67888888999875 2278887654
No 461
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=45.59 E-value=45 Score=22.59 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=23.7
Q ss_pred HhcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+..+.++|+-||+|. |...+......+ -++++-+|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCC
Confidence 345678999999974 333333333333 5799999976
No 462
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=45.48 E-value=28 Score=26.25 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=21.4
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 58 TMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 58 vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
|+-||.|.+..+.+++.+-. +.+|.-||..++
T Consensus 2 VVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~ 33 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGF 33 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSS
T ss_pred EEEECccHHHHHHHHHHHHC-CCEEEEEECCcc
Confidence 78899988887777776644 789999997753
No 463
>PRK07588 hypothetical protein; Provisional
Probab=45.41 E-value=35 Score=24.87 Aligned_cols=32 Identities=9% Similarity=-0.124 Sum_probs=22.4
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 688899987766666655533 56888888643
No 464
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=45.35 E-value=38 Score=24.84 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=23.8
Q ss_pred eEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 57 NTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
.|+-||.|.+.++++++.+-. +-+|+-+|..+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 589999988777777766533 56899998653
No 465
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.32 E-value=49 Score=25.36 Aligned_cols=33 Identities=9% Similarity=-0.168 Sum_probs=24.8
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 54 NAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 54 ~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..++|+-+|-| +|.+++.+.... +.+|+..|.+
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~ 40 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAH--LPAQALTLFC 40 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHc--CCEEEEEcCC
Confidence 46799999998 777777776654 4678888854
No 466
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=45.30 E-value=4 Score=24.46 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=23.2
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNLY 90 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~~ 90 (90)
.-||-||...|+|++..--+ + +...-+.|.|||
T Consensus 21 EDvLgvGh~~G~sSiiVPGs-G-e~NfDs~e~NP~ 53 (80)
T PF08149_consen 21 EDVLGVGHSKGFSSIIVPGS-G-EPNFDSLEANPF 53 (80)
T ss_pred HHeeEeeccCceeEEeccCC-C-CCCCCcccCCcc
Confidence 46899999999988765422 2 345667777776
No 467
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=45.29 E-value=32 Score=23.27 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=16.9
Q ss_pred CeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
++||-.|. +|..+..+++.+-+ +.+|+.++.+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 45666664 34445555555432 4466666554
No 468
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=45.27 E-value=76 Score=23.59 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=24.4
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
...+++|+-||. |+.++-+|..+.. +.+|+.++..
T Consensus 146 ~~~~~~vvVvGg--G~~g~e~A~~l~~~g~~Vtli~~~ 181 (444)
T PRK09564 146 DEEIKNIVIIGA--GFIGLEAVEAAKHLGKNVRIIQLE 181 (444)
T ss_pred hcCCCEEEEECC--CHHHHHHHHHHHhcCCcEEEEeCC
Confidence 346789999986 6677777766554 4577777654
No 469
>PRK08264 short chain dehydrogenase; Validated
Probab=45.27 E-value=32 Score=22.88 Aligned_cols=34 Identities=12% Similarity=-0.051 Sum_probs=20.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CC-EEEEEecC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DG-KVQWMNTN 88 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~-~v~~ie~~ 88 (90)
+.++||-+|. +|..+..+|+.+-. +. +|+.++.+
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecC
Confidence 4567777774 55556666665543 33 66666654
No 470
>PRK06057 short chain dehydrogenase; Provisional
Probab=45.17 E-value=43 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=23.9
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTN 88 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~ 88 (90)
.+.++||-+|...|. +..+++.+-+ +.+|+.++.+
T Consensus 5 ~~~~~vlItGasggI-G~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 5 LAGRVAVITGGGSGI-GLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCC
Confidence 356889999986544 6666666543 5688888765
No 471
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=45.09 E-value=74 Score=21.52 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=25.6
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.+.++|+-+|.| -.+..+|+.+.+ +.+|+..|.++
T Consensus 26 l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCH
Confidence 356899999986 466677777654 56999888763
No 472
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=44.98 E-value=32 Score=25.68 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
..++|+-+|+ |..+..+++.+.+ +..++.+|.++
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3578999998 8888888888876 56899998875
No 473
>PLN02494 adenosylhomocysteinase
Probab=44.82 E-value=74 Score=25.06 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=28.0
Q ss_pred HHHHHHh----cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 46 LSMLLKL----INAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 46 l~~l~~~----~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.-+.+. ...++|+-+|+| .|-..+..++++ +.+|+.+|+++
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp 287 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDP 287 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4445555 356999999986 344445555555 46899998876
No 474
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=44.80 E-value=60 Score=23.66 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=24.0
Q ss_pred cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.+++|.-||+|. |++........+-..+|+-+|+++
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4578999999876 554444433333234799999864
No 475
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=44.77 E-value=87 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=20.3
Q ss_pred eEEEEcccccHHHHHHHhhC---CCCCEEEEEecC
Q 044836 57 NTMEIGVYTGYSLLVTALAI---PDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~~G~sal~la~~~---~~~~~v~~ie~~ 88 (90)
..+-+++|+|....-++.++ .++-+|+++|..
T Consensus 186 d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~ 220 (329)
T PRK14045 186 DSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVG 220 (329)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 34556666666555455444 347899999974
No 476
>PLN02827 Alcohol dehydrogenase-like
Probab=44.77 E-value=47 Score=24.38 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=24.5
Q ss_pred HhcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 51 KLINAKNTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 51 ~~~~~~~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+..+.++||-.|+| .|..++.+|++.+ ...|++++.+
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~ 227 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDIN 227 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCC
Confidence 34567899999863 4555566777765 3368777754
No 477
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=44.51 E-value=52 Score=19.51 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHhCCCccccCCHHHHHHHH
Q 044836 17 EHECLKELRELTEKHPQNFMFSAPDEAQFLS 47 (90)
Q Consensus 17 ~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~ 47 (90)
....-+++++.|+++++|++. ++.-++.|.
T Consensus 25 ~g~~A~~I~~~A~e~~VPi~~-~~~LAr~L~ 54 (82)
T TIGR00789 25 VGEVAERIIEIAKKHGIPIVE-DPDLVDVLL 54 (82)
T ss_pred CCHHHHHHHHHHHHcCCCEEe-CHHHHHHHH
Confidence 456778999999999999753 555555554
No 478
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=44.50 E-value=43 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.021 Sum_probs=22.0
Q ss_pred EEEEcccccHHHHHHHhhCCCC-CEEEEEecCC
Q 044836 58 TMEIGVYTGYSLLVTALAIPDD-GKVQWMNTNL 89 (90)
Q Consensus 58 vLEiGt~~G~sal~la~~~~~~-~~v~~ie~~~ 89 (90)
|+-||.|.+.++++++.+-. + -+|+-+|..+
T Consensus 2 v~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL-GKIKIALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcC-CCceEEEEeCCC
Confidence 67888877777666666543 4 6888888654
No 479
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=44.49 E-value=47 Score=24.29 Aligned_cols=34 Identities=12% Similarity=-0.010 Sum_probs=24.1
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
...|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCC
Confidence 34799999987776666665432 56898888654
No 480
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=44.46 E-value=50 Score=26.17 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=32.7
Q ss_pred CccccCCHHHHHHHHHHHHhc-CCC-eEEEEcccccHHHHHHHhhCC
Q 044836 33 QNFMFSAPDEAQFLSMLLKLI-NAK-NTMEIGVYTGYSLLVTALAIP 77 (90)
Q Consensus 33 ~p~m~~~~~~~~ll~~l~~~~-~~~-~vLEiGt~~G~sal~la~~~~ 77 (90)
+|-....+.|..+...+.... +.+ .++|-|||||=+-.+|+-++.
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~ 57 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALA 57 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHH
Confidence 343466788888888777654 344 799999999988777776654
No 481
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=44.37 E-value=35 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=20.5
Q ss_pred eEEEEcccc-cHHHHHHHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVYT-GYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~~-G~sal~la~~~~~~~~v~~ie~~ 88 (90)
-||-||+|. |..+..-|...+.+.+|+-+|..
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 488899885 65555554433334688888764
No 482
>PRK07045 putative monooxygenase; Reviewed
Probab=44.34 E-value=40 Score=24.59 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=24.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~ 38 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAA 38 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCC
Confidence 45799999988777766666544 56888888654
No 483
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=44.29 E-value=42 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=19.9
Q ss_pred eEEEEccc-ccHHHHHHHhhCCCCCEEEEEecC
Q 044836 57 NTMEIGVY-TGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 57 ~vLEiGt~-~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
+||-||+| .|...+......+ -++++-+|.|
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 57889976 4444444333334 6899999876
No 484
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=44.20 E-value=28 Score=29.72 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=29.5
Q ss_pred cCCCeEEEEccccc---------HHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTG---------YSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G---------~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
...++||-||.|.. ||+..+++++.+ +.+++.++.+|
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 35689999999964 577778888776 56999999876
No 485
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=44.19 E-value=39 Score=24.91 Aligned_cols=33 Identities=15% Similarity=-0.037 Sum_probs=24.3
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..|+-||.|.+..+++++.+-. +-+|+-+|..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 5789999988877777765543 56888888654
No 486
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.17 E-value=29 Score=24.00 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.7
Q ss_pred CeEEEEcccccHHHHHHHhhCCCC-CEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDD-GKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~-~~v~~ie~~~ 89 (90)
++++-||+ |-.+..+|+.+.+. -.|+.+|.|+
T Consensus 1 m~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGA--GRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECC--cHHHHHHHHHHHhCCCceEEEEcCH
Confidence 46777777 56777778877765 4899999875
No 487
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=44.04 E-value=41 Score=26.88 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=27.6
Q ss_pred hcCCCeEEEEcccccHHHHHHHhhCCC--CCEEEEEecC
Q 044836 52 LINAKNTMEIGVYTGYSLLVTALAIPD--DGKVQWMNTN 88 (90)
Q Consensus 52 ~~~~~~vLEiGt~~G~sal~la~~~~~--~~~v~~ie~~ 88 (90)
..+.++||-.| |+|+.+.++++.+-. +-+|++++.+
T Consensus 312 ~~~~~~VLVTG-atGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 312 AKRRTRVLILG-VNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred hhcCCEEEEEC-CCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 45667888777 579999999998864 2489998864
No 488
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=43.92 E-value=43 Score=25.44 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=21.8
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
+.|+-||.|.|..+.....+-. +-+|+.+|.++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 5688999987655444433322 56898888764
No 489
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=43.92 E-value=1.1e+02 Score=21.48 Aligned_cols=70 Identities=7% Similarity=-0.049 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHHhCCCc------cccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEE
Q 044836 15 PREHECLKELRELTEKHPQN------FMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQW 84 (90)
Q Consensus 15 ~~~~~~l~~l~~~a~~~~~p------~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ 84 (90)
+.++++.+.+.+..+..+.+ ....++...++-..+.+..+...++-+++|++...+.+....+++.+|..
T Consensus 15 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~ 90 (349)
T cd06454 15 ANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIIS 90 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEE
Confidence 45678888888776542211 11234555666677777777666666666665444333333343445554
No 490
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=43.76 E-value=14 Score=29.01 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=31.0
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~~ 89 (90)
..+.++|-||-|.|.....+-..+| ..+++++|++|
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP 329 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDP 329 (482)
T ss_pred cccCcEEEEecCCCccccceeeecC-ccceeEEEECh
Confidence 3456888899999999999999998 78999999987
No 491
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=43.61 E-value=43 Score=24.32 Aligned_cols=32 Identities=16% Similarity=-0.017 Sum_probs=23.4
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 56 KNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 56 ~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
..|+-||.|.+.++++++.+-. +-+|+-+|..
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQH-GFSVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 4688899988777776665433 5688888865
No 492
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=43.42 E-value=83 Score=21.75 Aligned_cols=37 Identities=16% Similarity=-0.041 Sum_probs=27.3
Q ss_pred HHhcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 50 LKLINAKNTMEIG--VYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 50 ~~~~~~~~vLEiG--t~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.+..+..+||-.| .+.|..++.+|++.+ .++++++.+
T Consensus 138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~ 176 (324)
T cd08244 138 ATLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGG 176 (324)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCC
Confidence 4456677888888 578888888999875 567776643
No 493
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=43.34 E-value=35 Score=25.86 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCCC
Q 044836 55 AKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNLY 90 (90)
Q Consensus 55 ~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~~ 90 (90)
+++|+-|| .|+.++.+|..+.. +.+|+-+|..+.
T Consensus 180 ~~~vvIIG--gG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVG--GGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEEecCc
No 494
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=43.26 E-value=35 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=24.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.+++|+-||+ |+.++-+|..+.. +.+|+-+|..+
T Consensus 169 ~~~~vvViGg--G~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 169 VPESLVIIGG--GVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CCCeEEEECC--CHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 5789999997 4667766666554 46788887654
No 495
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=43.18 E-value=78 Score=23.09 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=26.1
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
.++++|+-||. |.+++-+|..+.. +.+|+-++..+
T Consensus 139 ~~~~~vvViGg--G~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 139 RDAQRVLVVGG--GLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred hcCCeEEEECC--CHHHHHHHHHHHhcCCeEEEEecCC
Confidence 46789999995 6778777777664 46888887653
No 496
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=43.18 E-value=49 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=23.3
Q ss_pred HhcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEE
Q 044836 51 KLINAKNTMEIGVY--TGYSLLVTALAIPDDGKVQWM 85 (90)
Q Consensus 51 ~~~~~~~vLEiGt~--~G~sal~la~~~~~~~~v~~i 85 (90)
+....++||-+|.+ .|..++.+|+... -.+|+++
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~ 189 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTA 189 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEE
Confidence 45567799999865 5556677787766 4666664
No 497
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=43.12 E-value=24 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=24.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEecC
Q 044836 54 NAKNTMEIGVYTGYSLLVTALAIPDDGKVQWMNTN 88 (90)
Q Consensus 54 ~~~~vLEiGt~~G~sal~la~~~~~~~~v~~ie~~ 88 (90)
.-..+++|||+.|+..-.+-..- -++++-+|.+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS 104 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTS 104 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecc
Confidence 35589999999999888776542 4677777754
No 498
>PLN02735 carbamoyl-phosphate synthase
Probab=43.02 E-value=27 Score=29.97 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=28.8
Q ss_pred CCCeEEEEcccc---c------HHHHHHHhhCCC-CCEEEEEecCC
Q 044836 54 NAKNTMEIGVYT---G------YSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 54 ~~~~vLEiGt~~---G------~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
..++||-||.|. | ||+..+++++.+ +.+++.+|.|+
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 357999999996 3 677788888776 56999999876
No 499
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=43.00 E-value=36 Score=25.44 Aligned_cols=35 Identities=17% Similarity=-0.095 Sum_probs=24.7
Q ss_pred cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEecCC
Q 044836 53 INAKNTMEIGVYTGYSLLVTALAIPD-DGKVQWMNTNL 89 (90)
Q Consensus 53 ~~~~~vLEiGt~~G~sal~la~~~~~-~~~v~~ie~~~ 89 (90)
..+++|+-||+| +.++-+|..+.. +.+|+-++.++
T Consensus 155 ~~~~~vvIIGgG--~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 155 TLPERLGIIGGG--NIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred hcCCeEEEECCC--HHHHHHHHHHHHcCCeEEEEecCC
Confidence 358899999984 666666665543 56888888653
No 500
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=42.97 E-value=92 Score=23.02 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHhcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEE
Q 044836 16 REHECLKELRELTEKHPQNFMFSAPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLVTALAIPDDGKVQWM 85 (90)
Q Consensus 16 ~~~~~l~~l~~~a~~~~~p~m~~~~~~~~ll~~l~~~~~~~~vLEiGt~~G~sal~la~~~~~~~~v~~i 85 (90)
..++.+...|+.+++.++ .++++.|.-+.. ++++|+.+++++.|++|
T Consensus 243 ~d~~A~~~~r~La~~eGi---lvG~SsGA~~~a--------------------a~~~a~~~~~g~~IVti 289 (300)
T COG0031 243 SDEEAIATARRLAREEGL---LVGISSGAALAA--------------------ALKLAKELPAGKTIVTI 289 (300)
T ss_pred CHHHHHHHHHHHHHHhCe---eecccHHHHHHH--------------------HHHHHHhcCCCCeEEEE
Done!