BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044837
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana
           GN=At1g65750 PE=3 SV=1
          Length = 620

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 4   FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNS 63
            A  G ++R+C GA      S           E+  +  GL  A E  +  + +E DS  
Sbjct: 474 LASAGGVLRDCTGA-WCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEV 532

Query: 64  VTKFILKGISCRGELDLIICEIRVLIDQDNQYRVVYTSRSCKLVTHDLAKMALANS 119
           +  F+  GIS    L  ++      + +D   R+V+  R    +   LA  A + S
Sbjct: 533 IVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLS 588


>sp|Q04V34|Y543_LEPBJ Probable transcriptional regulatory protein LBJ_0543 OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain JB197)
           GN=LBJ_0543 PE=3 SV=1
          Length = 249

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 23/115 (20%)

Query: 17  AVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTK-FILKGI--- 72
           A+MV+A + K      EI  +L  LGG +             + S SV++ F  KG+   
Sbjct: 96  AIMVSAVTDKKSRTTPEIKSILTKLGGSL-------------ATSGSVSRLFEKKGVIVL 142

Query: 73  --SCRGE---LDLIICE-IRVLIDQDNQYRVVYTSRSCKLVTHDLAKMALANSES 121
             S  GE   +DL + E    +I++   YRV+ T    + V H L +  L + ES
Sbjct: 143 ESSQIGEDKLVDLAVGEGAEDVINEGEVYRVITTPDDYESVLHALNEKGLKSEES 197


>sp|Q04YE4|Y2537_LEPBL Probable transcriptional regulatory protein LBL_2537 OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain L550)
           GN=LBL_2537 PE=3 SV=1
          Length = 249

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 23/115 (20%)

Query: 17  AVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTK-FILKGI--- 72
           A+MV+A + K      EI  +L  LGG +             + S SV++ F  KG+   
Sbjct: 96  AIMVSAVTDKKSRTTPEIKSILTKLGGSL-------------ATSGSVSRLFEKKGVIVL 142

Query: 73  --SCRGE---LDLIICE-IRVLIDQDNQYRVVYTSRSCKLVTHDLAKMALANSES 121
             S  GE   +DL + E    +I++   YRV+ T    + V H L +  L + ES
Sbjct: 143 ESSQIGEDKLVDLAVGEGAEDVINEGEVYRVITTPDDYESVLHALNEKGLKSEES 197


>sp|Q6NRI0|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A
           OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1
          Length = 852

 Score = 29.3 bits (64), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 49  EVTLSPLVIESD--------SNSVTKFILKGISCRGELDLIICEIRVLIDQDNQYRVVYT 100
           EVTL  L+ E D        +  + +F+LK   C  +L   I E     D D + R  Y 
Sbjct: 21  EVTLKELMDEEDILQECKAQNRKLVEFLLKA-ECLEDLVTFITE-EPPQDMDEKIRYKYP 78

Query: 101 SRSCKLVTHDLAKM 114
           + SC+L+T D++++
Sbjct: 79  NLSCELLTSDVSQI 92


>sp|Q6NRF1|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B
           OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1
          Length = 850

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 49  EVTLSPLVIESD--------SNSVTKFILKGISCRGELDLIICEIRVLIDQDNQYRVVYT 100
           EVTL  L+ E D        +  + +F+LK   C  +L   I E     D D + R  Y 
Sbjct: 21  EVTLKELMDEEDILQECKAQNRKLVEFLLKS-ECLEDLVTFITE-EPPQDMDEKIRYKYP 78

Query: 101 SRSCKLVTHDLAKM 114
           + SC+L+T D++++
Sbjct: 79  NLSCELLTSDVSQI 92


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,770,826
Number of Sequences: 539616
Number of extensions: 1255451
Number of successful extensions: 2975
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2969
Number of HSP's gapped (non-prelim): 15
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)