Query 044837
Match_columns 125
No_of_seqs 185 out of 1062
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13907 rnhA ribonuclease H; 100.0 7.1E-29 1.5E-33 158.2 13.0 115 1-118 13-127 (128)
2 PF13456 RVT_3: Reverse transc 99.9 2.9E-27 6.2E-32 140.8 9.5 86 32-117 1-86 (87)
3 PRK07708 hypothetical protein; 99.9 4.5E-24 9.7E-29 146.6 14.5 121 2-122 86-212 (219)
4 PRK07238 bifunctional RNase H/ 99.9 4.8E-24 1E-28 157.0 14.1 119 1-120 14-134 (372)
5 cd06222 RnaseH RNase H (RNase 99.9 4.4E-21 9.6E-26 119.9 14.2 113 3-116 13-130 (130)
6 COG0328 RnhA Ribonuclease HI [ 99.9 9.1E-22 2E-26 127.6 10.8 116 1-119 15-146 (154)
7 PRK08719 ribonuclease H; Revie 99.8 2.2E-17 4.8E-22 107.4 12.9 109 4-117 22-146 (147)
8 PRK00203 rnhA ribonuclease H; 99.7 2.3E-16 4.9E-21 103.1 12.1 115 1-121 15-145 (150)
9 PF00075 RNase_H: RNase H; In 99.7 3E-16 6.6E-21 99.8 10.0 106 2-116 16-131 (132)
10 PRK06548 ribonuclease H; Provi 99.7 4.4E-15 9.5E-20 97.7 14.1 111 1-119 17-143 (161)
11 KOG3752 Ribonuclease H [Replic 99.1 1.7E-09 3.8E-14 78.5 11.6 111 3-116 229-363 (371)
12 KOG1812 Predicted E3 ubiquitin 98.0 1.5E-05 3.4E-10 59.4 5.6 115 4-118 18-138 (384)
13 cd01284 Riboflavin_deaminase-r 92.5 0.68 1.5E-05 28.8 5.8 41 3-46 17-57 (115)
14 cd01285 nucleoside_deaminase N 92.2 0.84 1.8E-05 27.9 5.9 58 3-60 15-73 (109)
15 COG0590 CumB Cytosine/adenosin 92.1 0.79 1.7E-05 30.0 5.9 58 3-60 26-84 (152)
16 COG0295 Cdd Cytidine deaminase 90.9 3 6.5E-05 26.8 8.1 83 7-104 28-112 (134)
17 TIGR01354 cyt_deam_tetra cytid 89.8 1.2 2.6E-05 28.1 5.1 56 5-61 21-76 (127)
18 cd00786 cytidine_deaminase-lik 89.6 2.7 5.9E-05 25.0 6.3 43 3-45 16-60 (96)
19 PRK10860 tRNA-specific adenosi 88.0 2.4 5.1E-05 28.4 5.7 42 3-45 31-73 (172)
20 cd01283 cytidine_deaminase Cyt 86.8 2.6 5.7E-05 25.7 5.1 45 3-47 16-60 (112)
21 PF00383 dCMP_cyt_deam_1: Cyti 86.3 1.3 2.9E-05 26.4 3.5 57 2-59 21-78 (102)
22 PF00336 DNA_pol_viral_C: DNA 86.0 4.3 9.2E-05 28.1 6.0 83 4-106 103-186 (245)
23 TIGR02571 ComEB ComE operon pr 85.6 5.8 0.00013 25.9 6.4 41 4-45 24-80 (151)
24 PHA02588 cd deoxycytidylate de 78.1 17 0.00036 24.2 6.6 21 5-26 22-42 (168)
25 cd01286 deoxycytidylate_deamin 76.3 14 0.00031 23.4 5.7 41 4-45 19-81 (131)
26 PRK05578 cytidine deaminase; V 76.0 9.8 0.00021 24.3 4.8 56 5-61 24-79 (131)
27 PF05830 NodZ: Nodulation prot 74.9 5.5 0.00012 29.3 3.8 61 3-70 166-232 (321)
28 PRK08298 cytidine deaminase; V 74.5 14 0.00031 23.7 5.3 55 6-61 24-78 (136)
29 PRK12411 cytidine deaminase; P 72.9 15 0.00032 23.5 5.1 57 4-61 23-79 (132)
30 PRK06848 hypothetical protein; 71.8 14 0.00031 23.8 4.9 57 3-60 25-81 (139)
31 PRK14828 undecaprenyl pyrophos 66.2 29 0.00062 24.8 5.9 54 6-62 29-82 (256)
32 TIGR00326 eubact_ribD riboflav 65.9 11 0.00023 28.0 3.8 36 6-45 20-55 (344)
33 COG0084 TatD Mg-dependent DNas 62.9 4.1 8.9E-05 29.1 1.1 47 43-89 188-235 (256)
34 PF03259 Robl_LC7: Roadblock/L 59.2 28 0.0006 19.8 4.2 53 5-63 14-75 (91)
35 PRK15000 peroxidase; Provision 55.9 51 0.0011 22.4 5.5 42 8-51 127-168 (200)
36 COG0117 RibD Pyrimidine deamin 54.3 29 0.00063 22.6 3.8 34 6-43 29-62 (146)
37 PRK09027 cytidine deaminase; P 53.4 88 0.0019 23.0 7.0 51 6-57 72-124 (295)
38 COG3981 Predicted acetyltransf 52.9 25 0.00053 23.7 3.4 28 38-65 117-144 (174)
39 PRK13191 putative peroxiredoxi 52.6 60 0.0013 22.4 5.5 42 8-51 126-167 (215)
40 PF01614 IclR: Bacterial trans 51.3 55 0.0012 20.0 5.0 24 2-25 77-100 (129)
41 PRK10786 ribD bifunctional dia 50.4 33 0.00071 25.8 4.2 36 6-45 26-61 (367)
42 PLN02807 diaminohydroxyphospho 50.1 31 0.00067 26.1 4.0 35 7-45 56-90 (380)
43 PRK14835 undecaprenyl pyrophos 49.9 97 0.0021 22.5 6.3 51 10-63 47-97 (275)
44 KOG1018 Cytosine deaminase FCY 48.7 77 0.0017 21.2 5.3 44 6-49 33-77 (169)
45 PRK13190 putative peroxiredoxi 46.9 84 0.0018 21.3 5.5 42 8-51 119-160 (202)
46 PRK10382 alkyl hydroperoxide r 46.9 81 0.0017 21.2 5.3 41 8-50 121-161 (187)
47 TIGR02431 pcaR_pcaU beta-ketoa 45.1 1E+02 0.0022 21.4 6.2 24 2-25 195-218 (248)
48 COG0450 AhpC Peroxiredoxin [Po 44.7 1E+02 0.0022 21.2 5.7 43 7-51 125-167 (194)
49 TIGR00055 uppS undecaprenyl di 44.4 33 0.00072 24.1 3.2 50 9-61 4-53 (226)
50 KOG3139 N-acetyltransferase [G 44.3 30 0.00066 23.0 2.8 23 40-62 106-128 (165)
51 CHL00139 rpl18 ribosomal prote 44.2 76 0.0016 19.6 6.6 50 8-58 29-85 (109)
52 PRK14837 undecaprenyl pyrophos 43.7 34 0.00075 24.1 3.2 49 10-61 12-60 (230)
53 cd03016 PRX_1cys Peroxiredoxin 43.3 1E+02 0.0022 20.8 5.7 42 8-51 119-160 (203)
54 PRK11569 transcriptional repre 43.1 1.1E+02 0.0024 21.8 5.8 25 2-26 218-242 (274)
55 PRK10163 DNA-binding transcrip 43.0 1.2E+02 0.0025 21.6 5.9 25 2-26 213-237 (271)
56 COG1212 KdsB CMP-2-keto-3-deox 42.8 58 0.0013 23.1 4.1 29 42-70 33-61 (247)
57 PRK11449 putative deoxyribonuc 42.0 16 0.00034 26.0 1.3 20 45-64 192-211 (258)
58 PRK09027 cytidine deaminase; P 41.8 1.2E+02 0.0025 22.4 5.7 81 6-100 211-292 (295)
59 PRK14830 undecaprenyl pyrophos 41.5 1.2E+02 0.0026 21.6 5.7 54 5-62 24-77 (251)
60 PRK13599 putative peroxiredoxi 41.5 1.1E+02 0.0024 21.1 5.4 42 8-51 121-162 (215)
61 PTZ00137 2-Cys peroxiredoxin; 40.8 99 0.0021 22.2 5.2 42 8-51 190-231 (261)
62 PRK14841 undecaprenyl pyrophos 40.5 41 0.00089 23.7 3.2 49 10-61 9-57 (233)
63 PRK14833 undecaprenyl pyrophos 40.3 42 0.00091 23.7 3.2 52 6-61 7-58 (233)
64 PF11080 DUF2622: Protein of u 40.1 85 0.0018 19.0 4.7 42 4-45 32-73 (96)
65 PRK15090 DNA-binding transcrip 40.0 1.2E+02 0.0027 21.2 5.7 26 2-27 201-226 (257)
66 PTZ00349 dehydrodolichyl dipho 37.0 47 0.001 24.7 3.1 49 10-61 25-73 (322)
67 PRK14839 undecaprenyl pyrophos 36.8 49 0.0011 23.5 3.1 50 10-62 15-64 (239)
68 PRK13189 peroxiredoxin; Provis 36.7 1.4E+02 0.0031 20.6 5.5 42 8-51 128-169 (222)
69 PRK14827 undecaprenyl pyrophos 36.6 44 0.00095 24.5 2.9 50 10-62 73-122 (296)
70 PRK14834 undecaprenyl pyrophos 35.9 62 0.0014 23.1 3.6 51 10-63 20-70 (249)
71 PRK14842 undecaprenyl pyrophos 34.3 58 0.0013 23.1 3.2 50 10-62 14-63 (241)
72 PRK14832 undecaprenyl pyrophos 34.3 56 0.0012 23.4 3.1 50 10-62 24-73 (253)
73 PRK14829 undecaprenyl pyrophos 34.1 56 0.0012 23.2 3.1 50 10-62 20-69 (243)
74 cd00475 CIS_IPPS Cis (Z)-Isopr 33.9 58 0.0013 22.7 3.1 50 10-62 6-55 (221)
75 PF00411 Ribosomal_S11: Riboso 33.8 1.1E+02 0.0025 18.6 5.6 52 9-61 14-70 (110)
76 PLN02182 cytidine deaminase 33.7 1.1E+02 0.0023 23.0 4.5 39 6-44 67-107 (339)
77 PLN02402 cytidine deaminase 32.9 1.2E+02 0.0025 22.4 4.6 62 6-68 47-114 (303)
78 PRK05593 rplR 50S ribosomal pr 32.9 1.3E+02 0.0027 18.8 5.8 51 7-58 37-93 (117)
79 COG3341 Predicted double-stran 32.6 1.5E+02 0.0033 20.8 4.9 55 16-72 94-153 (225)
80 CHL00041 rps11 ribosomal prote 32.5 1.3E+02 0.0027 18.7 7.0 49 10-59 28-81 (116)
81 PRK14838 undecaprenyl pyrophos 31.0 67 0.0015 22.8 3.1 52 6-61 13-64 (242)
82 COG0520 csdA Selenocysteine ly 31.0 39 0.00084 25.8 2.0 24 28-51 274-297 (405)
83 PRK10057 rpsV 30S ribosomal su 30.9 11 0.00024 18.8 -0.6 19 51-69 19-37 (44)
84 PF03481 SUA5: Putative GTP-bi 30.3 1E+02 0.0022 19.2 3.5 23 37-59 84-106 (125)
85 PRK14831 undecaprenyl pyrophos 29.6 75 0.0016 22.6 3.1 49 10-61 26-74 (249)
86 PF05903 Peptidase_C97: PPPDE 29.2 42 0.00092 21.8 1.7 31 87-117 93-123 (151)
87 PRK09822 lipopolysaccharide co 29.2 75 0.0016 22.7 3.0 21 39-59 172-192 (269)
88 PRK10425 DNase TatD; Provision 28.4 35 0.00076 24.2 1.3 19 46-64 189-207 (258)
89 PF02887 PK_C: Pyruvate kinase 28.1 1.3E+02 0.0029 18.2 3.8 64 41-104 6-70 (117)
90 PF14432 DYW_deaminase: DYW fa 27.7 24 0.00052 21.9 0.3 37 32-70 61-98 (116)
91 KOG1602 Cis-prenyltransferase 27.6 1.9E+02 0.0042 20.9 4.8 54 4-61 37-90 (271)
92 PRK09834 DNA-binding transcrip 27.6 2.2E+02 0.0048 20.0 5.5 23 2-25 203-225 (263)
93 PF05854 MC1: Non-histone chro 26.6 1.2E+02 0.0025 18.2 3.1 30 9-43 6-35 (93)
94 TIGR00857 pyrC_multi dihydroor 26.6 2E+02 0.0043 21.7 5.2 40 30-69 191-230 (411)
95 PRK14836 undecaprenyl pyrophos 26.5 61 0.0013 23.2 2.2 50 6-59 17-66 (253)
96 cd03015 PRX_Typ2cys Peroxiredo 26.5 1.9E+02 0.0041 18.8 5.8 43 8-52 122-164 (173)
97 PRK07627 dihydroorotase; Provi 26.1 2.1E+02 0.0044 21.9 5.2 39 31-69 206-244 (425)
98 PF03308 ArgK: ArgK protein; 26.0 1.2E+02 0.0025 22.0 3.5 28 33-60 103-130 (266)
99 PF10115 HlyU: Transcriptional 25.8 1.6E+02 0.0034 17.7 5.8 45 8-52 44-88 (91)
100 PLN02706 glucosamine 6-phospha 25.8 1.2E+02 0.0026 18.8 3.4 25 39-63 106-130 (150)
101 PF07411 DUF1508: Domain of un 25.6 1.1E+02 0.0024 15.8 4.5 39 4-51 3-41 (49)
102 PF01026 TatD_DNase: TatD rela 25.6 74 0.0016 22.3 2.6 22 43-64 188-209 (255)
103 PRK14840 undecaprenyl pyrophos 25.5 1.4E+02 0.003 21.3 3.9 54 6-61 21-76 (250)
104 PF12194 Ste5_C: Protein kinas 25.4 19 0.00041 24.4 -0.4 37 78-114 34-70 (191)
105 cd04681 Nudix_Hydrolase_22 Mem 25.3 99 0.0021 18.7 2.9 19 5-23 2-20 (130)
106 PF12458 DUF3686: ATPase invol 25.3 66 0.0014 24.9 2.3 34 59-92 414-447 (448)
107 COG3623 SgaU Putative L-xylulo 24.9 1.4E+02 0.003 21.5 3.7 30 40-69 98-135 (287)
108 COG1414 IclR Transcriptional r 24.9 2.5E+02 0.0054 19.7 5.8 25 2-26 192-216 (246)
109 KOG0833 Cytidine deaminase [Nu 24.8 2.3E+02 0.0049 19.2 4.7 39 6-44 43-81 (173)
110 TIGR01355 cyt_deam_dimer cytid 24.8 2E+02 0.0043 21.0 4.6 48 7-54 197-244 (283)
111 PTZ00253 tryparedoxin peroxida 24.7 2.2E+02 0.0048 19.0 5.5 41 8-50 129-169 (199)
112 PRK10812 putative DNAse; Provi 24.7 47 0.001 23.7 1.4 20 45-64 190-209 (265)
113 cd01318 DHOase_IIb Dihydroorot 24.2 2.4E+02 0.0052 21.0 5.1 40 31-70 151-190 (361)
114 PRK07369 dihydroorotase; Provi 24.2 2.4E+02 0.0051 21.6 5.2 40 30-69 206-245 (418)
115 PF10298 WhiA_N: WhiA N-termin 24.1 1.4E+02 0.003 17.2 3.2 34 33-69 4-41 (86)
116 TIGR01355 cyt_deam_dimer cytid 24.1 2.3E+02 0.005 20.7 4.8 63 6-69 44-112 (283)
117 PLN02660 pantoate--beta-alanin 23.7 1.4E+02 0.0031 21.8 3.7 37 10-49 181-217 (284)
118 PF00925 GTP_cyclohydro2: GTP 23.7 1.6E+02 0.0035 19.4 3.8 34 38-71 126-159 (169)
119 PF14563 DUF4444: Domain of un 23.6 65 0.0014 16.3 1.4 16 7-22 21-36 (42)
120 COG0020 UppS Undecaprenyl pyro 23.4 1.4E+02 0.003 21.3 3.6 53 9-64 21-73 (245)
121 TIGR03628 arch_S11P archaeal r 23.3 2E+02 0.0043 18.0 6.3 49 10-59 17-71 (114)
122 cd01269 PLX Pollux (PLX) Phosp 23.3 1.3E+02 0.0029 19.2 3.0 40 6-47 85-124 (129)
123 PF08675 RNA_bind: RNA binding 22.9 1.2E+02 0.0026 18.0 2.6 21 83-103 23-43 (87)
124 PF14591 AF0941-like: AF0941-l 22.9 57 0.0012 20.7 1.4 34 57-90 42-75 (127)
125 COG1083 NeuA CMP-N-acetylneura 22.8 1.2E+02 0.0026 21.3 3.0 31 40-70 31-62 (228)
126 cd04678 Nudix_Hydrolase_19 Mem 22.7 1.3E+02 0.0029 18.2 3.1 19 5-23 3-21 (129)
127 PF15513 DUF4651: Domain of un 22.6 1.5E+02 0.0033 16.4 3.2 23 79-101 5-27 (62)
128 PF02348 CTP_transf_3: Cytidyl 22.4 2.4E+02 0.0052 18.8 4.6 31 40-70 27-58 (217)
129 PF10114 PocR: Sensory domain 22.2 64 0.0014 20.9 1.6 22 4-25 20-41 (173)
130 TIGR00018 panC pantoate--beta- 22.2 1.4E+02 0.0031 21.7 3.5 37 10-49 178-214 (282)
131 PRK04250 dihydroorotase; Provi 22.2 2.7E+02 0.0059 21.1 5.1 41 30-70 176-216 (398)
132 PF07511 DUF1525: Protein of u 22.0 1.3E+02 0.0028 18.8 2.8 22 34-55 63-84 (114)
133 PRK05309 30S ribosomal protein 21.3 2.3E+02 0.005 18.0 7.0 49 10-59 32-85 (128)
134 PRK08417 dihydroorotase; Provi 20.8 3.1E+02 0.0067 20.6 5.2 39 31-69 175-213 (386)
135 KOG0400 40S ribosomal protein 20.6 61 0.0013 20.9 1.2 14 4-17 47-60 (151)
136 cd02955 SSP411 TRX domain, SSP 20.3 2.3E+02 0.0051 17.6 4.1 40 8-48 83-122 (124)
137 TIGR03632 bact_S11 30S ribosom 20.3 2.2E+02 0.0048 17.4 7.0 50 9-59 14-68 (108)
138 PRK09060 dihydroorotase; Valid 20.1 3.1E+02 0.0067 21.1 5.1 39 32-70 208-246 (444)
139 TIGR03137 AhpC peroxiredoxin. 20.1 2.8E+02 0.006 18.4 5.5 41 8-50 121-161 (187)
No 1
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.96 E-value=7.1e-29 Score=158.17 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=103.1
Q ss_pred CCcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcchHHH
Q 044837 1 KAVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGELDL 80 (125)
Q Consensus 1 ~~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~~ 80 (125)
.||++|+|+||||+.|.+...+ . .+..|+++||++|+++||+++.++|+++|+|+|||+.|++++++.......+..
T Consensus 13 ~~g~~G~G~vi~~~~~~~~~~~--~-~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~~~~~~~~~~ 89 (128)
T PRK13907 13 NPGPSGAGVFIKGVQPAVQLSL--P-LGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEYAKNKMFAP 89 (128)
T ss_pred CCCccEEEEEEEECCeeEEEEe--c-ccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHHHhcChhHHH
Confidence 3789999999999998776543 2 346899999999999999999999999999999999999999987655567899
Q ss_pred HHHHHHHHhhCCCceEEEEecCCcchHHHHHHhhhhcC
Q 044837 81 IICEIRVLIDQDNQYRVVYTSRSCKLVTHDLAKMALAN 118 (125)
Q Consensus 81 ~i~~i~~l~~~~~~~~~~~v~R~~N~~Ad~LAk~a~~~ 118 (125)
++++++.+++.|+.+.+.||||++|+.||.||+.|+..
T Consensus 90 l~~~~~~l~~~f~~~~~~~v~r~~N~~Ad~LA~~a~~~ 127 (128)
T PRK13907 90 LLEEALQYIKSFDLFFIKWIPSSQNKVADELARKAILQ 127 (128)
T ss_pred HHHHHHHHHhcCCceEEEEcCchhchhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999753
No 2
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.95 E-value=2.9e-27 Score=140.81 Aligned_cols=86 Identities=36% Similarity=0.375 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcchHHHHHHHHHHHhhCCCceEEEEecCCcchHHHHH
Q 044837 32 VEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGELDLIICEIRVLIDQDNQYRVVYTSRSCKLVTHDL 111 (125)
Q Consensus 32 ~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~R~~N~~Ad~L 111 (125)
|++||++|+++||++|.++|+++|+|||||+.+++++++....++++..++.+|+.+++.|+++.|.||||+.|.+||.|
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~r~~N~~A~~L 80 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIPREQNKVADAL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE--GGGSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEChHHhHHHHHH
Confidence 68999999999999999999999999999999999999987766789999999999999999999999999999999999
Q ss_pred Hhhhhc
Q 044837 112 AKMALA 117 (125)
Q Consensus 112 Ak~a~~ 117 (125)
||.|++
T Consensus 81 A~~a~~ 86 (87)
T PF13456_consen 81 AKFALS 86 (87)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999975
No 3
>PRK07708 hypothetical protein; Validated
Probab=99.92 E-value=4.5e-24 Score=146.61 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=103.0
Q ss_pred CcceEEEEEEeCCCCCEE--EEecccCCCCCChhHHHHHHHHHHHHHHHHhCccc--EEEEeCcHHHHHHHHcCCCCcc-
Q 044837 2 AVFAGLGCIIRNCEGAVM--VTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSP--LVIESDSNSVTKFILKGISCRG- 76 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i--~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~--v~~esDs~~vv~~l~~~~~~~~- 76 (125)
|+.+|+|+||+++.|... ......+....|+++||+.|++.||+.|.++|+++ |+|++||+.|++++++.+....
T Consensus 86 ~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DSqlVi~qi~g~wk~~~~ 165 (219)
T PRK07708 86 TKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDSQVVLNQLAGEWPCYDE 165 (219)
T ss_pred CCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEeccHHHHHHhCCCceeCCh
Confidence 788999999999877643 23344566678999999999999999999999976 8999999999999999765543
Q ss_pred hHHHHHHHHHHHhhCCCc-eEEEEecCCcchHHHHHHhhhhcCCCCC
Q 044837 77 ELDLIICEIRVLIDQDNQ-YRVVYTSRSCKLVTHDLAKMALANSESR 122 (125)
Q Consensus 77 ~~~~~i~~i~~l~~~~~~-~~~~~v~R~~N~~Ad~LAk~a~~~~~~~ 122 (125)
.+..+++++..+++.|.. +.+.||||++|..||.||+.|++.....
T Consensus 166 ~l~~y~~~i~~l~~~~~l~~~~~~VpR~~N~~AD~LAk~Al~~~~~~ 212 (219)
T PRK07708 166 HLNHWLDRIEQKLKQLKLTPVYEPISRKQNKEADQLATQALEGTVIE 212 (219)
T ss_pred hHHHHHHHHHHHHhhCCceEEEEECCchhhhHHHHHHHHHHhcCCCC
Confidence 567788899988888764 8899999999999999999999876543
No 4
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.92 E-value=4.8e-24 Score=156.97 Aligned_cols=119 Identities=17% Similarity=0.223 Sum_probs=104.8
Q ss_pred CCcceEEEEEEeCCCCC-EEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCC-cchH
Q 044837 1 KAVFAGLGCIIRNCEGA-VMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISC-RGEL 78 (125)
Q Consensus 1 ~~g~~g~G~vird~~g~-~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~-~~~~ 78 (125)
.||.+|+|+||+|++|. ++...+..+. ..|++.||+.||++||+++.++|.++|+|++||+.|++++++.+.. ...+
T Consensus 14 n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~i~~~~~~~~~~l 92 (372)
T PRK07238 14 NPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQMSGRWKVKHPDM 92 (372)
T ss_pred CCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhCCCCccCChHH
Confidence 47899999999998765 5555555555 6888999999999999999999999999999999999999987653 3568
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCCcchHHHHHHhhhhcCCC
Q 044837 79 DLIICEIRVLIDQDNQYRVVYTSRSCKLVTHDLAKMALANSE 120 (125)
Q Consensus 79 ~~~i~~i~~l~~~~~~~~~~~v~R~~N~~Ad~LAk~a~~~~~ 120 (125)
..++.+++.+++.|+.+.|.||+|++|+.||.||+.|+....
T Consensus 93 ~~~~~~i~~l~~~f~~~~i~~v~r~~N~~AD~LA~~a~~~~~ 134 (372)
T PRK07238 93 KPLAAQARELASQFGRVTYTWIPRARNAHADRLANEAMDAAA 134 (372)
T ss_pred HHHHHHHHHHHhcCCceEEEECCchhhhHHHHHHHHHHHhhc
Confidence 889999999999999999999999999999999999986554
No 5
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.88 E-value=4.4e-21 Score=119.86 Aligned_cols=113 Identities=20% Similarity=0.138 Sum_probs=101.2
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCC-CcchHHHH
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGIS-CRGELDLI 81 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~-~~~~~~~~ 81 (125)
+.+|+|++++++.+.+........ ...+++++|+.|+.+||+++...+.+++.|++||+.+++.+++... .......+
T Consensus 13 ~~~g~g~v~~~~~~~~~~~~~~~~-~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~ 91 (130)
T cd06222 13 GPAGAGVVLRDPGGEVLLSGGLLG-GNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGWYEGKPVKNVDL 91 (130)
T ss_pred CceEEEEEEEeCCCeEEEeccccC-CCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhccccCCChhhHHH
Confidence 578999999999998887766544 5789999999999999999999999999999999999999998654 34567888
Q ss_pred HHHHHHHhhCCCceEEEEecC----CcchHHHHHHhhhh
Q 044837 82 ICEIRVLIDQDNQYRVVYTSR----SCKLVTHDLAKMAL 116 (125)
Q Consensus 82 i~~i~~l~~~~~~~~~~~v~R----~~N~~Ad~LAk~a~ 116 (125)
+.+++.++..+..+.|.|||| ..|..||.|||.++
T Consensus 92 ~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 92 WQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 999999988899999999999 99999999999874
No 6
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.88 E-value=9.1e-22 Score=127.58 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=96.7
Q ss_pred CCcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCC-------
Q 044837 1 KAVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGIS------- 73 (125)
Q Consensus 1 ~~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~------- 73 (125)
.||++|+|+|++...++. ..+.... ..|++.+|++|+++||+++++.+...|.++|||++|+++|+....
T Consensus 15 NpG~gG~g~vl~~~~~~~--~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~~w~~~w~~~~w 91 (154)
T COG0328 15 NPGPGGWGAVLRYGDGEK--ELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGITRWIVKWKKNGW 91 (154)
T ss_pred CCCCceEEEEEEcCCceE--EEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHhhccccCc
Confidence 489999999999766666 2223333 799999999999999999999999999999999999999984211
Q ss_pred -----CcchHHHHHHHHHHHhhCCCceEEEEec----CCcchHHHHHHhhhhcCC
Q 044837 74 -----CRGELDLIICEIRVLIDQDNQYRVVYTS----RSCKLVTHDLAKMALANS 119 (125)
Q Consensus 74 -----~~~~~~~~i~~i~~l~~~~~~~~~~~v~----R~~N~~Ad~LAk~a~~~~ 119 (125)
.+-+-..+++++..+++.+..+.+.||+ +..|+.||.||+.+...+
T Consensus 92 ~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 92 KTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred cccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 1122346789999999999999999999 888999999999998654
No 7
>PRK08719 ribonuclease H; Reviewed
Probab=99.77 E-value=2.2e-17 Score=107.38 Aligned_cols=109 Identities=18% Similarity=0.115 Sum_probs=85.7
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc--------CCC--
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK--------GIS-- 73 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~--------~~~-- 73 (125)
++|+|+++.+..|..+...+..+....|++.||+.|+..||+.+.+. ..|.|||+.+++.++. ...
T Consensus 22 ~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yvi~~i~~~~~~W~~~~w~~s 97 (147)
T PRK08719 22 RGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYCVRGFNEWLDTWKQKGWRKS 97 (147)
T ss_pred CcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHHHHHHHHHHHHHHhCCcccC
Confidence 68999999998887664444445556899999999999999998764 3799999999999952 221
Q ss_pred --CcchHHHHHHHHHHHhhCCCceEEEEecC----CcchHHHHHHhhhhc
Q 044837 74 --CRGELDLIICEIRVLIDQDNQYRVVYTSR----SCKLVTHDLAKMALA 117 (125)
Q Consensus 74 --~~~~~~~~i~~i~~l~~~~~~~~~~~v~R----~~N~~Ad~LAk~a~~ 117 (125)
.+-....+++.|..+++ ...++|.||++ ..|..||.||+.|..
T Consensus 98 ~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 98 DKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred CCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 11223567777777766 57799999999 679999999999864
No 8
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.72 E-value=2.3e-16 Score=103.09 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=86.7
Q ss_pred CCcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcC--------C
Q 044837 1 KAVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKG--------I 72 (125)
Q Consensus 1 ~~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~--------~ 72 (125)
.|+.+|+|+|+.+.++... .+... ...|++.||++|+..||+.+.+ ...|.|.|||+.+++.|+.. .
T Consensus 15 n~~~~g~g~v~~~~~~~~~--~~~~~-~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w~~~Wk~~~~ 89 (150)
T PRK00203 15 NPGPGGWGAILRYKGHEKE--LSGGE-ALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEWIHGWKKNGW 89 (150)
T ss_pred CCCceEEEEEEEECCeeEE--EecCC-CCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHHHHHHHHcCC
Confidence 3788999999987554332 23333 3688999999999999998765 35799999999999999851 1
Q ss_pred CC----cchHHHHHHHHHHHhhCCCceEEEEec----CCcchHHHHHHhhhhcCCCC
Q 044837 73 SC----RGELDLIICEIRVLIDQDNQYRVVYTS----RSCKLVTHDLAKMALANSES 121 (125)
Q Consensus 73 ~~----~~~~~~~i~~i~~l~~~~~~~~~~~v~----R~~N~~Ad~LAk~a~~~~~~ 121 (125)
.. +-....+++++..++.. ..+.|.||| ++.|..||.||+.+...+..
T Consensus 90 ~~~~g~~v~n~dl~~~i~~l~~~-~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~~~ 145 (150)
T PRK00203 90 KTADKKPVKNVDLWQRLDAALKR-HQIKWHWVKGHAGHPENERCDELARAGAEEATL 145 (150)
T ss_pred cccCCCccccHHHHHHHHHHhcc-CceEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 11 11234577888877765 678999999 67799999999999876543
No 9
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.69 E-value=3e-16 Score=99.85 Aligned_cols=106 Identities=21% Similarity=0.128 Sum_probs=80.9
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc-----CCCCcc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK-----GISCRG 76 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~-----~~~~~~ 76 (125)
++.+|+|+++.+. . ..+..++ ..|++.||+.|+.+||+ +. .-++|.|.|||+.+++.++. ......
T Consensus 16 ~~~~~~g~v~~~~--~---~~~~~~~-~~s~~~aEl~Ai~~AL~-~~--~~~~v~I~tDS~~v~~~l~~~~~~~~~~~~~ 86 (132)
T PF00075_consen 16 PGKGGAGYVVWGG--R---NFSFRLG-GQSNNRAELQAIIEALK-AL--EHRKVTIYTDSQYVLNALNKWLHGNGWKKTS 86 (132)
T ss_dssp TTEEEEEEEEETT--E---EEEEEEE-SECHHHHHHHHHHHHHH-TH--STSEEEEEES-HHHHHHHHTHHHHTTSBSCT
T ss_pred CCceEEEEEEECC--e---EEEeccc-ccchhhhheehHHHHHH-Hh--hcccccccccHHHHHHHHHHhcccccccccc
Confidence 6778999977443 2 2223344 78999999999999999 55 22999999999999998887 333322
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEecCC-----cchHHHHHHhhhh
Q 044837 77 ELDLIICEIRVLIDQDNQYRVVYTSRS-----CKLVTHDLAKMAL 116 (125)
Q Consensus 77 ~~~~~i~~i~~l~~~~~~~~~~~v~R~-----~N~~Ad~LAk~a~ 116 (125)
....+..++..++.....+.|.|||+. .|..||.|||.|.
T Consensus 87 ~~~~i~~~i~~~~~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 87 NGRPIKNEIWELLSRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp SSSBHTHHHHHHHHHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeccccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 222577788888877888999999997 6789999999986
No 10
>PRK06548 ribonuclease H; Provisional
Probab=99.68 E-value=4.4e-15 Score=97.68 Aligned_cols=111 Identities=21% Similarity=0.143 Sum_probs=83.6
Q ss_pred CCcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc--------CC
Q 044837 1 KAVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK--------GI 72 (125)
Q Consensus 1 ~~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~--------~~ 72 (125)
.||++|+|+++.+. + .. +.. ....|++.||++|+++||+.+. ....+|.|.|||+.+++.++. ..
T Consensus 17 npg~~G~g~~~~~~-~-~~---~g~-~~~~TNnraEl~Aii~aL~~~~-~~~~~v~I~TDS~yvi~~i~~W~~~Wk~~gW 89 (161)
T PRK06548 17 NPGPSGWAWYVDEN-T-WD---SGG-WDIATNNIAELTAVRELLIATR-HTDRPILILSDSKYVINSLTKWVYSWKMRKW 89 (161)
T ss_pred CCCceEEEEEEeCC-c-EE---ccC-CCCCCHHHHHHHHHHHHHHhhh-cCCceEEEEeChHHHHHHHHHHHHHHHHCCC
Confidence 48999999999853 2 21 222 2368999999999999997553 455689999999999999994 11
Q ss_pred C----CcchHHHHHHHHHHHhhCCCceEEEEecCC----cchHHHHHHhhhhcCC
Q 044837 73 S----CRGELDLIICEIRVLIDQDNQYRVVYTSRS----CKLVTHDLAKMALANS 119 (125)
Q Consensus 73 ~----~~~~~~~~i~~i~~l~~~~~~~~~~~v~R~----~N~~Ad~LAk~a~~~~ 119 (125)
. .+-.-..++++|..+++. ..++|.||+-. .|..||.||+.+....
T Consensus 90 k~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~~ 143 (161)
T PRK06548 90 RKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAANNF 143 (161)
T ss_pred cccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 1 111246788888888876 47999999864 5999999999987544
No 11
>KOG3752 consensus Ribonuclease H [Replication, recombination and repair]
Probab=99.12 E-value=1.7e-09 Score=78.52 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=84.0
Q ss_pred cceEEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCC--------
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGIS-------- 73 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~-------- 73 (125)
-.+|+|+..=+.. -.- .+.++. +..|++.||+.|+.+||+-|++....+|.|-|||..+++.|+.+..
T Consensus 229 ~~AGyGvywg~~~--e~N-~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i~~l~~wv~~~k~~~~k 305 (371)
T KOG3752|consen 229 SRAGYGVYWGPGH--ELN-VSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFINSLTLWVQGWKKNGWK 305 (371)
T ss_pred CcceeEEeeCCCC--ccc-ccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHHHHHHHHHhhhccCccc
Confidence 3578888886532 222 233444 7899999999999999999999999999999999999999984110
Q ss_pred --Ccc-------hHHHHHHHHHHHhhC--CCceEEEEecC----CcchHHHHHHhhhh
Q 044837 74 --CRG-------ELDLIICEIRVLIDQ--DNQYRVVYTSR----SCKLVTHDLAKMAL 116 (125)
Q Consensus 74 --~~~-------~~~~~i~~i~~l~~~--~~~~~~~~v~R----~~N~~Ad~LAk~a~ 116 (125)
..+ .-...+.++-.|.+. ...+++.||+- ..|..||.||+.+.
T Consensus 306 ~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs 363 (371)
T KOG3752|consen 306 TSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGS 363 (371)
T ss_pred cccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhh
Confidence 111 123456677777776 47899999986 57999999999883
No 12
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.5e-05 Score=59.36 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=88.0
Q ss_pred ceEEEEEEeCC-CCCEEEEecccCCC--CCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcc--hH
Q 044837 4 FAGLGCIIRNC-EGAVMVTATSKKPC--LGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRG--EL 78 (125)
Q Consensus 4 ~~g~G~vird~-~g~~i~~~~~~~~~--~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~--~~ 78 (125)
.+|.|+.+.|. +....+........ ..++..||++|+..++..+.++|+.++.+..|...+...+.+...... ..
T Consensus 18 ~~g~~vai~d~~d~~~~f~~k~~~~~~~~~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~~~~~~~~~~ 97 (384)
T KOG1812|consen 18 LAGFGVAICDEHDDDLLFQMKASDHDSDSITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGREKPEQHRKI 97 (384)
T ss_pred cccCceeeeccccHHHHHHhhcCcccccccchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhhhhHHHHHHH
Confidence 47899999986 55555444443332 378999999999999999999999999999998888887776544332 46
Q ss_pred HHHHHHHHHHhhCCCceEEEEecCC-cchHHHHHHhhhhcC
Q 044837 79 DLIICEIRVLIDQDNQYRVVYTSRS-CKLVTHDLAKMALAN 118 (125)
Q Consensus 79 ~~~i~~i~~l~~~~~~~~~~~v~R~-~N~~Ad~LAk~a~~~ 118 (125)
..++.+.+.+...+....-..+++. ....|-.||+.+..+
T Consensus 98 ~~l~~~v~~~r~~l~~~~~i~~~~~~d~~~~~~lA~e~i~s 138 (384)
T KOG1812|consen 98 VLLVELVQRIREQLTSSEPILVPKNADIKFAYKLAREAIVS 138 (384)
T ss_pred HHHHHHHHHHHHHhhcccceecccchhhHHHHHHHHHhhcc
Confidence 6777777777777777766777665 446799999999875
No 13
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=92.49 E-value=0.68 Score=28.84 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=31.1
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHH
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLML 46 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~ 46 (125)
+..-+|.||-+.+|+++..+..... ...+||..|+..+.+.
T Consensus 17 ~~~pvGaviv~~~g~iv~~g~n~~~---~~~HAE~~ai~~a~~~ 57 (115)
T cd01284 17 PNPPVGCVIVDDDGEIVGEGYHRKA---GGPHAEVNALASAGEK 57 (115)
T ss_pred CCCCEEEEEEeCCCeEEEEecCCCC---CcccHHHHHHHHHhhc
Confidence 3446899999888998887665432 5689999999988764
No 14
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=92.25 E-value=0.84 Score=27.91 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=38.7
Q ss_pred cceEEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
+...+|.+|.|.+|+++..+..... ......+||..|+..+.+.-....+....+++.
T Consensus 15 ~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t 73 (109)
T cd01285 15 GEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTT 73 (109)
T ss_pred CCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEe
Confidence 4567899999988998876654432 234578899999988765533223455555543
No 15
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=92.07 E-value=0.79 Score=29.98 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=40.3
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCC-ChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLG-DVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~-~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
|...+|.||.+.+|.++..+........ -..+||..|++.+-+......+...++++-
T Consensus 26 ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyvT 84 (152)
T COG0590 26 GEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVT 84 (152)
T ss_pred CCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEEe
Confidence 3456899999999999886665433332 334899999999998876554555555543
No 16
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=90.86 E-value=3 Score=26.81 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=57.9
Q ss_pred EEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcchHHHHHHHHH
Q 044837 7 LGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGELDLIICEIR 86 (125)
Q Consensus 7 ~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~~~i~~i~ 86 (125)
+|.+++..+|++..+.---.....--..||-.|+..++.. -...+..|.+.+|. ....++-+ -||
T Consensus 28 VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~----------~~~~sPCG----~CR 92 (134)
T COG0295 28 VGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADT----------GKPVSPCG----ACR 92 (134)
T ss_pred EEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCC----------CCCcCCcH----HHH
Confidence 7999999999988776543334566788999999999877 66678999999988 22233443 355
Q ss_pred HHhhCC--CceEEEEecCCc
Q 044837 87 VLIDQD--NQYRVVYTSRSC 104 (125)
Q Consensus 87 ~l~~~~--~~~~~~~v~R~~ 104 (125)
+++.+| ++..+.+++...
T Consensus 93 Q~i~Ef~~~d~~ii~~~~~~ 112 (134)
T COG0295 93 QVLAEFCGDDTLIILLPKDG 112 (134)
T ss_pred HHHHHhcCCCceEEEecCCC
Confidence 555553 455666666554
No 17
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=89.82 E-value=1.2 Score=28.14 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=40.0
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
..+|.++++.+|+++.+...-.........||..|+..+...-.. .+..|.+-++.
T Consensus 21 ~~vgAa~~~~~G~i~~G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~-~i~~i~vv~~~ 76 (127)
T TIGR01354 21 FKVGAALLTKDGRIFTGVNVENASYPLTICAERSAIGKAISAGYR-KFVAIAVADSA 76 (127)
T ss_pred CeEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCC-CeEEEEEEeCC
Confidence 468999999999988855543333445678999999988866332 67777777665
No 18
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=89.62 E-value=2.7 Score=25.02 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=28.8
Q ss_pred cceEEEEEEeCC-CCCEEEEecccC-CCCCChhHHHHHHHHHHHH
Q 044837 3 VFAGLGCIIRNC-EGAVMVTATSKK-PCLGDVEITEVLAILGGLM 45 (125)
Q Consensus 3 g~~g~G~vird~-~g~~i~~~~~~~-~~~~~~~~AE~~Al~~al~ 45 (125)
+...+|.++.+. +|.++..+.... ........||..|+..+.+
T Consensus 16 ~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~ 60 (96)
T cd00786 16 SNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGS 60 (96)
T ss_pred CCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHH
Confidence 556788888875 577776554322 2234568899999987654
No 19
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=88.00 E-value=2.4 Score=28.38 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=28.8
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCC-CCChhHHHHHHHHHHHH
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPC-LGDVEITEVLAILGGLM 45 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~-~~~~~~AE~~Al~~al~ 45 (125)
|..-+|.||.+ +|++|..+...... .....+||..|+..+.+
T Consensus 31 g~~pvGAVIV~-~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~ 73 (172)
T PRK10860 31 REVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 73 (172)
T ss_pred CCCCEEEEEEe-CCEEEEEeeCCCCCCCCCccCHHHHHHHHHHH
Confidence 34468888886 68888776554322 23346899999998865
No 20
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=86.83 E-value=2.6 Score=25.75 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=32.9
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHH
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLA 47 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a 47 (125)
+...+|.++.+.+|+++.+.............||..|+..+...-
T Consensus 16 ~~~~vga~i~~~~g~i~~G~n~e~~~~~~~~hAE~~ai~~~~~~~ 60 (112)
T cd01283 16 SNFTVGAALLTKDGRIFTGVNVENASYGLTLCAERTAIGKAVSEG 60 (112)
T ss_pred CCCeEEEEEEECCCCEEEeEEeecCCCCCCcCHHHHHHHHHHHcC
Confidence 456789999988899886655444445567789999998877543
No 21
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=86.31 E-value=1.3 Score=26.36 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=35.5
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
.+...+|++|.+++|.++..+..... .......||..|+..+.+. ....+...++++
T Consensus 21 ~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~~~~~~~~lyv 78 (102)
T PF00383_consen 21 CGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GGSSLKGCTLYV 78 (102)
T ss_dssp TTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TSSGETTEEEEE
T ss_pred cCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-ccccccCccccc
Confidence 45678999999977777766554322 2333569999998887766 222234445544
No 22
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=86.01 E-value=4.3 Score=28.11 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=52.7
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCC-cchHHHHH
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISC-RGELDLII 82 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~-~~~~~~~i 82 (125)
..|||..+-. |.....++. ..++..+|++|...|..+ .-.++ +-||+..|+ ++++.. ++.++..-
T Consensus 103 pTgwgi~i~~--~~~~~Tfs~----~l~IhtaELlaaClAr~~----~~~r~-l~tDnt~Vl---srkyts~PW~lac~A 168 (245)
T PF00336_consen 103 PTGWGISITG--QRMRGTFSK----PLPIHTAELLAACLARLM----SGARC-LGTDNTVVL---SRKYTSFPWLLACAA 168 (245)
T ss_pred CCcceeeecC--ceeeeeecc----cccchHHHHHHHHHHHhc----cCCcE-EeecCcEEE---ecccccCcHHHHHHH
Confidence 4577777532 334444433 577899999988665543 33344 889999885 344433 45565555
Q ss_pred HHHHHHhhCCCceEEEEecCCcch
Q 044837 83 CEIRVLIDQDNQYRVVYTSRSCKL 106 (125)
Q Consensus 83 ~~i~~l~~~~~~~~~~~v~R~~N~ 106 (125)
+.| ....+|.|||..-|-
T Consensus 169 ~wi------Lrgts~~yVPS~~NP 186 (245)
T PF00336_consen 169 NWI------LRGTSFYYVPSKYNP 186 (245)
T ss_pred HHh------hcCceEEEeccccCc
Confidence 544 456789999998885
No 23
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=85.59 E-value=5.8 Score=25.92 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=27.4
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCC----------------CChhHHHHHHHHHHHH
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCL----------------GDVEITEVLAILGGLM 45 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~----------------~~~~~AE~~Al~~al~ 45 (125)
...+|.||.+ +|++|..+....+.. ....+||..||..+.+
T Consensus 24 ~~~VGAVIV~-d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~ 80 (151)
T TIGR02571 24 RLSVGATIVR-DKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAK 80 (151)
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHh
Confidence 3467888774 688888766554321 1236899999998743
No 24
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=78.05 E-value=17 Score=24.21 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=13.6
Q ss_pred eEEEEEEeCCCCCEEEEecccC
Q 044837 5 AGLGCIIRNCEGAVMVTATSKK 26 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~ 26 (125)
.-+|+||.. +|++|..+....
T Consensus 22 ~~VGAVIV~-~~~Iis~GyNg~ 42 (168)
T PHA02588 22 WKVGAVIEK-NGRIISTGYNGT 42 (168)
T ss_pred CCEEEEEEE-CCEEEEEEeCCC
Confidence 356777774 588887665443
No 25
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=76.26 E-value=14 Score=23.38 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=27.9
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCC----------------------CCChhHHHHHHHHHHHH
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPC----------------------LGDVEITEVLAILGGLM 45 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~----------------------~~~~~~AE~~Al~~al~ 45 (125)
...+|+||.+ +|++|..+....+. .....+||..||..+.+
T Consensus 19 ~~~VGAViv~-~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~~ 81 (131)
T cd01286 19 RRQVGAVIVK-DKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAAR 81 (131)
T ss_pred CCCEEEEEEE-CCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHhH
Confidence 3568888887 47788766544321 12457899999998765
No 26
>PRK05578 cytidine deaminase; Validated
Probab=75.96 E-value=9.8 Score=24.26 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
-.+|..+++.+|++..+...-.....-...||..|+..++..- ...+..|.+-+|.
T Consensus 24 f~Vgaa~~~~~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~G-~~~i~~i~vv~~~ 79 (131)
T PRK05578 24 FPVGAALLTDDGRIYTGCNIENASYGLTNCAERTAIFKAISEG-GGRLVAIACVGET 79 (131)
T ss_pred CceEEEEEeCCCCEEEEEEeeCccccCCcCHHHHHHHHHHHcC-CCceEEEEEEecC
Confidence 3589999999999887766332223346789999999887442 2357777777765
No 27
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=74.91 E-value=5.5 Score=29.26 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=29.7
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHH---HHHHHHHHHh---CcccEEEEeCcHHHHHHHHc
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAI---LGGLMLAAEV---TLSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al---~~al~~a~~~---~~~~v~~esDs~~vv~~l~~ 70 (125)
|..-+|+-||-.+|+-+..-.. ...-+..++ ..++..++.+ .-.+|.+-|||+.|++.+.+
T Consensus 166 g~~~IGVHVRhGngeD~~~h~~-------~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSaeVid~fr~ 232 (321)
T PF05830_consen 166 GYSVIGVHVRHGNGEDIMDHAP-------YWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAEVIDQFRK 232 (321)
T ss_dssp TSEEEEEEE----------------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HHHHHHHHH
T ss_pred CCceEEEEEeccCCcchhccCc-------cccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHHHHHHHHH
Confidence 4567899999777753322211 112222233 3455545433 34779999999999999986
No 28
>PRK08298 cytidine deaminase; Validated
Probab=74.50 E-value=14 Score=23.72 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
.+|..++..+|++..+...-......-..||..|+..++..- ...+..|.+-+|.
T Consensus 24 ~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~G-~~~~~~i~v~~~~ 78 (136)
T PRK08298 24 GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKLQ-KRVTHSICVAREN 78 (136)
T ss_pred ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHCC-CceEEEEEEEcCC
Confidence 789999999999887765332334556799999999877442 2235556666555
No 29
>PRK12411 cytidine deaminase; Provisional
Probab=72.92 E-value=15 Score=23.46 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=39.9
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
.-.+|..++..+|++..+...-.....-...||..|+..++..- ...+..|.+-+|.
T Consensus 23 ~~~VgAa~~t~~G~i~~G~nvEn~s~~~s~CAE~~Ai~~av~~g-~~~i~~i~v~~~~ 79 (132)
T PRK12411 23 KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADT 79 (132)
T ss_pred CCceEEEEEeCCCCEEEEEEeecCCCCcCcCHHHHHHHHHHHCC-CCceEEEEEEeCC
Confidence 35689999999999887766433323345689999998886442 2357777777765
No 30
>PRK06848 hypothetical protein; Validated
Probab=71.81 E-value=14 Score=23.78 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=37.5
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
....+|..++..+|++..+...-.........||-.|+..++..- ...+..|.+-++
T Consensus 25 s~f~VgAa~l~~~G~i~~G~NvEnas~~~tiCAEr~Ai~~av~~g-~~~i~~i~~v~~ 81 (139)
T PRK06848 25 DWHHVGAALRTKTGRIYAAVHLEAYVGRITVCAEAIAIGKAISEG-DHEIDTIVAVRH 81 (139)
T ss_pred CCCcEEEEEEeCCCCEEEEEEeecCCCCcccCHHHHHHHHHHHcC-CCceEEEEEEec
Confidence 345689999999999887765433234456789999998887542 123455544443
No 31
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=66.20 E-value=29 Score=24.83 Aligned_cols=54 Identities=11% Similarity=-0.052 Sum_probs=36.7
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
-+|+ |-|.+|.+ +....++....-..+=+.++..-++++.++|++.|.++.=|.
T Consensus 29 HvAi-ImDGNrRw--A~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~ 82 (256)
T PRK14828 29 HVGI-IVDGNRRW--ARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLST 82 (256)
T ss_pred EEEE-EecCChHH--HHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEh
Confidence 3444 44767766 333323321144667788899999999999999999987753
No 32
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=65.85 E-value=11 Score=27.95 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=27.3
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLM 45 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~ 45 (125)
-+|+||.+ +|+++..+.... ....+||..|+..+.+
T Consensus 20 ~vGaviv~-~~~ii~~g~n~~---~~~~HAE~~ai~~a~~ 55 (344)
T TIGR00326 20 LVGCVIVK-NGEIVGEGAHQK---AGEPHAEVHALRQAGE 55 (344)
T ss_pred CEEEEEEe-CCEEEEEeeCCC---CCCCCHHHHHHHHhcc
Confidence 47888888 799888766543 2356999999998755
No 33
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=62.91 E-value=4.1 Score=29.06 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=31.7
Q ss_pred HHHHHHHhCcccEEEEeCcHHHHHH-HHcCCCCcchHHHHHHHHHHHh
Q 044837 43 GLMLAAEVTLSPLVIESDSNSVTKF-ILKGISCRGELDLIICEIRVLI 89 (125)
Q Consensus 43 al~~a~~~~~~~v~~esDs~~vv~~-l~~~~~~~~~~~~~i~~i~~l~ 89 (125)
.-+.+..+-..++.+||||..+.-. ..+....+.....+++.+..+.
T Consensus 188 ~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk 235 (256)
T COG0084 188 LREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELK 235 (256)
T ss_pred HHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHHh
Confidence 3456788899999999999998654 3443444555555555555544
No 34
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=59.16 E-value=28 Score=19.79 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=30.0
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHH-----HHHHHH-HHHHhC---cccEEEEeCcHH
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLA-----ILGGLM-LAAEVT---LSPLVIESDSNS 63 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~A-----l~~al~-~a~~~~---~~~v~~esDs~~ 63 (125)
+--|+++-|.+|.++.. . ..+...+|..| ++...+ .+.+++ ++.+.++++...
T Consensus 14 gv~~~~l~~~dG~~i~~-~-----~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~~ 75 (91)
T PF03259_consen 14 GVRGAVLVDKDGLVIAS-S-----GIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKGE 75 (91)
T ss_dssp TEEEEEEEETTSEEEEE-T-----SSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEE
T ss_pred CeeEEEEEcCCCCEEEE-e-----cCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCCE
Confidence 34578888999998877 1 12223333333 332222 233343 788888887643
No 35
>PRK15000 peroxidase; Provisional
Probab=55.91 E-value=51 Score=22.38 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=32.2
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.++-|++|.+.......++ ...+..|++.++.+|++..+.|
T Consensus 127 ~tfiID~~G~I~~~~~~~~~--~gr~~~eilr~l~al~~~~~~~ 168 (200)
T PRK15000 127 GSFLIDANGIVRHQVVNDLP--LGRNIDEMLRMVDALQFHEEHG 168 (200)
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHhhhHHhcC
Confidence 56777999998887665443 3357899999999999987764
No 36
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=54.32 E-value=29 Score=22.64 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGG 43 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~a 43 (125)
-+|+||.+. |+++..+.... .-.-+||..||..+
T Consensus 29 ~VG~VIV~~-~~Ivg~G~h~~---aG~pHAEv~Al~~a 62 (146)
T COG0117 29 SVGCVIVKD-GEIVGEGYHEK---AGGPHAEVCALRMA 62 (146)
T ss_pred ceeEEEEEC-CEEEeeeecCC---CCCCcHHHHHHHHc
Confidence 468888874 47777665432 44568999999887
No 37
>PRK09027 cytidine deaminase; Provisional
Probab=53.45 E-value=88 Score=22.97 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=34.2
Q ss_pred EEEEEEeCCCCCEEEEecccCC--CCCChhHHHHHHHHHHHHHHHHhCcccEEE
Q 044837 6 GLGCIIRNCEGAVMVTATSKKP--CLGDVEITEVLAILGGLMLAAEVTLSPLVI 57 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~--~~~~~~~AE~~Al~~al~~a~~~~~~~v~~ 57 (125)
-+|.+++..+|++..+...-.. .......||-.|+..++.. -+.++..|.+
T Consensus 72 ~VGAa~~~~sG~iy~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~-Ge~~i~~I~v 124 (295)
T PRK09027 72 NVGAIARGVSGNFYFGANMEFAGAALQQTVHAEQSAISHAWLR-GEKAIADITV 124 (295)
T ss_pred cEEEEEEeCCCCEEEEEeeccCCCCCCCCcCHHHHHHHHHHHC-CCCceEEEEE
Confidence 4789999999998877654332 2345678999998887643 2234555554
No 38
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=52.86 E-value=25 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCcccEEEEeCcHHHH
Q 044837 38 LAILGGLMLAAEVTLSPLVIESDSNSVT 65 (125)
Q Consensus 38 ~Al~~al~~a~~~~~~~v~~esDs~~vv 65 (125)
..|+.||+.|+++|+.+|.+-.|...+.
T Consensus 117 emLkl~L~~ar~lgi~~Vlvtcd~dN~A 144 (174)
T COG3981 117 EMLKLALEKARELGIKKVLVTCDKDNIA 144 (174)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCCCch
Confidence 4689999999999999999999876554
No 39
>PRK13191 putative peroxiredoxin; Provisional
Probab=52.58 E-value=60 Score=22.36 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.+.......++ ...+.-|++.++.+|+...+.|
T Consensus 126 ~tfIID~~G~Ir~~~~~~~~--~gr~~~eilr~l~alq~~~~~~ 167 (215)
T PRK13191 126 AVFIVDDKGTVRLILYYPME--IGRNIDEILRAIRALQLVDKAG 167 (215)
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHhhhhhhcC
Confidence 56788999998876655443 3358999999999999876663
No 40
>PF01614 IclR: Bacterial transcriptional regulator This Pfam family contains some of the members of the iclR family; InterPro: IPR014757 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; PDB: 3MQ0_A 2IA2_D 3OBF_B 2G7U_C 3R4K_A 1TF1_D 1MKM_A 1YSP_A 3BJN_A 1TD5_A ....
Probab=51.32 E-value=55 Score=20.00 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=20.6
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|++|.++.+.+..
T Consensus 77 ~gv~~iA~Pi~~~~g~~~~alsv~ 100 (129)
T PF01614_consen 77 PGVAAIAVPIFDPNGQVVAALSVS 100 (129)
T ss_dssp TTEEEEEEEEEETTSCEEEEEEEE
T ss_pred cccceEEEEEECCCCCEEEEEEEe
Confidence 678899999999999998877654
No 41
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=50.38 E-value=33 Score=25.79 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=25.6
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLM 45 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~ 45 (125)
-+|+||-+ +|+++..+..... . ..+||..|+..+-+
T Consensus 26 ~vGaviv~-~g~ii~~g~n~~~--g-~~HAE~~ai~~a~~ 61 (367)
T PRK10786 26 NVGCVIVK-DGEIVGEGYHQRA--G-EPHAEVHALRMAGE 61 (367)
T ss_pred CEEEEEEe-CCEEEEEEeCCCC--C-CCCHHHHHHHHHhh
Confidence 37888876 6888877664322 2 37999999998754
No 42
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=50.11 E-value=31 Score=26.14 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=24.9
Q ss_pred EEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHH
Q 044837 7 LGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLM 45 (125)
Q Consensus 7 ~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~ 45 (125)
+|+||-+ +|+++..+..... . ..+||..|+..|-+
T Consensus 56 VGaViV~-~g~Ii~~g~n~~~--g-~~HAEi~Ai~~a~~ 90 (380)
T PLN02807 56 VGCVIVK-DGRIVGEGFHPKA--G-QPHAEVFALRDAGD 90 (380)
T ss_pred EEEEEEE-CCEEEEEEeCCCC--C-CcCHHHHHHHHhhh
Confidence 6777765 4898877665432 2 36999999998755
No 43
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=49.90 E-value=97 Score=22.47 Aligned_cols=51 Identities=12% Similarity=-0.072 Sum_probs=35.8
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNS 63 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~ 63 (125)
||-|.++.+ +....++ ...-..+=+..+..-++++.++|++.|.++.=|..
T Consensus 47 iImDGNrRw--Ak~~g~~-~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~E 97 (275)
T PRK14835 47 LILDGNRRF--ARALGLQ-REMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTD 97 (275)
T ss_pred EEecCchHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEcc
Confidence 344766665 3333333 33456677778999999999999999999887643
No 44
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=48.73 E-value=77 Score=21.19 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=28.6
Q ss_pred EEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLAAE 49 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~ 49 (125)
-+|+|+.+.+|.++..+-.... ......+||+.++..=...+..
T Consensus 33 pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~ 77 (169)
T KOG1018|consen 33 PVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKS 77 (169)
T ss_pred ceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhh
Confidence 4788888878888876655422 2334456999999883333333
No 45
>PRK13190 putative peroxiredoxin; Provisional
Probab=46.89 E-value=84 Score=21.29 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=31.5
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.+........ ....+..|++.++.+|+...+.|
T Consensus 119 ~~fiId~~G~I~~~~~~~~--~~gr~~~ellr~l~~l~~~~~~~ 160 (202)
T PRK13190 119 GVFIIDPNQIVRWMIYYPA--ETGRNIDEIIRITKALQVNWKRK 160 (202)
T ss_pred EEEEECCCCEEEEEEEeCC--CCCCCHHHHHHHHHHhhhHHhcC
Confidence 6688899998876554333 33458899999999999987764
No 46
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=46.88 E-value=81 Score=21.24 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=31.2
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHh
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEV 50 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~ 50 (125)
..+|-|.+|.+........ ....+..|.++.+.+|+...+.
T Consensus 121 ~tfIID~~G~I~~~~~~~~--~~~~~~~eil~~l~alq~~~~~ 161 (187)
T PRK10382 121 ATFVVDPQGIIQAIEVTAE--GIGRDASDLLRKIKAAQYVASH 161 (187)
T ss_pred EEEEECCCCEEEEEEEeCC--CCCCCHHHHHHHHHhhhhHhhc
Confidence 4477799999887765432 3445899999999999997766
No 47
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=45.13 E-value=1e+02 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.5
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|.+|.++.+.+-.
T Consensus 195 ~g~~~vA~Pv~~~~g~~~aalsv~ 218 (248)
T TIGR02431 195 LGLRSIAVPIRNARGQVVAALNVS 218 (248)
T ss_pred cCCeEEEEEEECCCCCEEEEEEEe
Confidence 678899999999999999877644
No 48
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=1e+02 Score=21.19 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 7 LGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 7 ~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
=|.+|-|++|.+........ ...-+.-|.+.++.|||+..+.|
T Consensus 125 R~~FIIDp~g~ir~~~v~~~--~iGRn~dEilR~idAlq~~~~hg 167 (194)
T COG0450 125 RGTFIIDPDGVIRHILVNPL--TIGRNVDEILRVIDALQFVAKHG 167 (194)
T ss_pred eEEEEECCCCeEEEEEEecC--CCCcCHHHHHHHHHHHHHHHHhC
Confidence 38889999998766655433 34567899999999999987764
No 49
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=44.41 E-value=33 Score=24.06 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=37.4
Q ss_pred EEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 9 CIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 9 ~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
+||-|.+|.+ +....++ ...-..+=+.++..-++++.++|++.|.++.=|
T Consensus 4 AiImDGNrRw--Ak~~gl~-~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 4 AIIMDGNGRW--AKKKGKP-RAYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred EEEcCCCHHH--HHHCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 3566877776 3333343 455677888899999999999999999998755
No 50
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=44.31 E-value=30 Score=23.03 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCcccEEEEeCcH
Q 044837 40 ILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 40 l~~al~~a~~~~~~~v~~esDs~ 62 (125)
+..+|+.+.+.|.+.|++||+-.
T Consensus 106 vr~aId~m~~~g~~eVvLeTe~~ 128 (165)
T KOG3139|consen 106 VRKAIDAMRSRGYSEVVLETEVT 128 (165)
T ss_pred HHHHHHHHHHCCCcEEEEecccc
Confidence 46789999999999999999754
No 51
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=44.23 E-value=76 Score=19.58 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=31.2
Q ss_pred EEEEeCCCCCEEEEeccc---C----CCCCChhHHHHHHHHHHHHHHHHhCcccEEEE
Q 044837 8 GCIIRNCEGAVMVTATSK---K----PCLGDVEITEVLAILGGLMLAAEVTLSPLVIE 58 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~---~----~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~e 58 (125)
.=||.|..|.++.+.+.. + ....+...|+..+.+.| +-|.+.|+..|+|.
T Consensus 29 aQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla-~ra~~~gi~~vvfD 85 (109)
T CHL00139 29 AQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLA-KKSLKKGITKVVFD 85 (109)
T ss_pred EEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEc
Confidence 347788899998877741 1 11344444555555444 34567799998876
No 52
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.67 E-value=34 Score=24.07 Aligned_cols=49 Identities=8% Similarity=-0.103 Sum_probs=37.1
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
||-|.+|.+ +....++ ...-..+=+.++..-++++.++|++.|.++.=|
T Consensus 12 iImDGNrRw--Ak~~gl~-~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS 60 (230)
T PRK14837 12 IIMDGNRRW--ALKKGLS-FFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 (230)
T ss_pred EEccCCHHH--HHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 455888877 3333343 355677888899999999999999999998755
No 53
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=43.26 E-value=1e+02 Score=20.83 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=30.7
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.+.......+. ...+..|++.++.+|+...+.|
T Consensus 119 ~~fiID~~G~I~~~~~~~~~--~gr~~~ell~~l~~lq~~~~~~ 160 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPAT--TGRNFDEILRVVDALQLTDKHK 160 (203)
T ss_pred EEEEECCCCeEEEEEecCCC--CCCCHHHHHHHHHHHhhHhhcC
Confidence 46888999988776654433 2346889999999999886653
No 54
>PRK11569 transcriptional repressor IclR; Provisional
Probab=43.06 E-value=1.1e+02 Score=21.78 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=21.0
Q ss_pred CcceEEEEEEeCCCCCEEEEecccC
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKK 26 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~ 26 (125)
||..++++-|+|..|.++.+.+...
T Consensus 218 ~gv~~iA~Pi~~~~g~~~aalsvs~ 242 (274)
T PRK11569 218 LGLRCVAACIFDEHREPFAAISISG 242 (274)
T ss_pred cCcEEEEEEEECCCCCEEEEEEEEe
Confidence 6788999999999999998877543
No 55
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=43.04 E-value=1.2e+02 Score=21.60 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=20.9
Q ss_pred CcceEEEEEEeCCCCCEEEEecccC
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKK 26 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~ 26 (125)
+|..++++-|+|..|.++.+.+...
T Consensus 213 ~gv~~vAvPI~~~~g~~~aalsvs~ 237 (271)
T PRK10163 213 VGLNCIASAIYDDVGSVVAAISISG 237 (271)
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEE
Confidence 6778999999999999998877543
No 56
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=42.84 E-value=58 Score=23.12 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=24.9
Q ss_pred HHHHHHHHhCcccEEEEeCcHHHHHHHHc
Q 044837 42 GGLMLAAEVTLSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 42 ~al~~a~~~~~~~v~~esDs~~vv~~l~~ 70 (125)
+-.+-|.+-|..+|++-||+..+.+.+.+
T Consensus 33 rV~e~a~~s~~~rvvVATDde~I~~av~~ 61 (247)
T COG1212 33 RVAERALKSGADRVVVATDDERIAEAVQA 61 (247)
T ss_pred HHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 44566777799999999999999999986
No 57
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=41.95 E-value=16 Score=25.96 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.4
Q ss_pred HHHHHhCcccEEEEeCcHHH
Q 044837 45 MLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 45 ~~a~~~~~~~v~~esDs~~v 64 (125)
+.+......+|.+|||+..+
T Consensus 192 ~~~~~ipldriL~ETD~P~l 211 (258)
T PRK11449 192 DVIAKLPLASLLLETDAPDM 211 (258)
T ss_pred HHHHhCChhhEEEecCCCCC
Confidence 44567799999999999875
No 58
>PRK09027 cytidine deaminase; Provisional
Probab=41.83 E-value=1.2e+02 Score=22.36 Aligned_cols=81 Identities=5% Similarity=-0.038 Sum_probs=47.1
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHh-CcccEEEEeCcHHHHHHHHcCCCCcchHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEV-TLSPLVIESDSNSVTKFILKGISCRGELDLIICE 84 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~-~~~~v~~esDs~~vv~~l~~~~~~~~~~~~~i~~ 84 (125)
-.|+.+++.+|++..+...--........||-.||..++.--.+. .+..+.+-.+.. ...++. .-
T Consensus 211 ~vGaAl~~~dG~i~~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~~i~lv~~~~----------~~ispc----g~ 276 (295)
T PRK09027 211 YSGVALETKDGRIYTGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQRAVLVEKAD----------AKLSQW----DA 276 (295)
T ss_pred ceeEEEEeCCCCEEEEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEEEEEEEeCCC----------CCcCch----HH
Confidence 368888888899876554322234556778888888777433322 356676666651 112222 34
Q ss_pred HHHHhhCCCceEEEEe
Q 044837 85 IRVLIDQDNQYRVVYT 100 (125)
Q Consensus 85 i~~l~~~~~~~~~~~v 100 (125)
|+.++..|....+.++
T Consensus 277 cRq~L~ef~~~~~~~~ 292 (295)
T PRK09027 277 TQATLKALGCHELERV 292 (295)
T ss_pred HHHHHHHhCCCCcEEE
Confidence 5566665544455554
No 59
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.54 E-value=1.2e+02 Score=21.65 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=35.7
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
.-+|+|+ |.++.+ +....++ ...-..+=+..+..-++|+.++|++.|.++.=|.
T Consensus 24 ~HVAiIm-DGNrRw--Ak~~gl~-~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~ 77 (251)
T PRK14830 24 KHIAIIM-DGNGRW--AKKRMLP-RIAGHKAGMDTVKKITKAASELGVKVLTLYAFST 77 (251)
T ss_pred CeEEEEe-cCchHH--HHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeh
Confidence 3344444 655554 2222232 3445666677899999999999999999998443
No 60
>PRK13599 putative peroxiredoxin; Provisional
Probab=41.51 E-value=1.1e+02 Score=21.08 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=30.9
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
..+|-|.+|.+....... .....+..|++..+.+|+...+.+
T Consensus 121 ~tfIID~dG~Ir~~~~~p--~~~gr~~~eilr~l~~lq~~~~~~ 162 (215)
T PRK13599 121 AVFIVDDKGTIRLIMYYP--QEVGRNVDEILRALKALQTADQYG 162 (215)
T ss_pred EEEEECCCCEEEEEEEcC--CCCCCCHHHHHHHHHHhhhhhhcC
Confidence 457779999988775432 234468899999999998877663
No 61
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=40.75 E-value=99 Score=22.19 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=31.8
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.+.......++ ......|++.++.||+...+.|
T Consensus 190 ~tFIID~dG~I~~~~~~~~~--~gr~v~eiLr~l~alq~~~~~g 231 (261)
T PTZ00137 190 ASVLVDKAGVVKHVAVYDLG--LGRSVDETLRLFDAVQFAEKTG 231 (261)
T ss_pred EEEEECCCCEEEEEEEeCCC--CCCCHHHHHHHHHHhchhhhcC
Confidence 45777999998877654433 3348999999999999877664
No 62
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.47 E-value=41 Score=23.69 Aligned_cols=49 Identities=16% Similarity=0.028 Sum_probs=36.7
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
||-|.++.+ +....++ ...-..+=+.++.+-++++.++|++.|.++.=|
T Consensus 9 iImDGNrRw--Ak~~g~~-~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS 57 (233)
T PRK14841 9 IIMDGNGRW--AKKRGLP-RIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFS 57 (233)
T ss_pred EEccCCHHH--HHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 455777776 3333333 455677888899999999999999999998754
No 63
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.34 E-value=42 Score=23.65 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=38.1
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
-+|+ |-|.++.+ +....++ ...-..+=+.++.+-++++.++|++.|.++.=|
T Consensus 7 HVai-ImDGNrRw--A~~~gl~-~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS 58 (233)
T PRK14833 7 HLAI-IMDGNGRW--AKLRGKA-RAAGHKKGVKTLREITIWCANHKLECLTLYAFS 58 (233)
T ss_pred eEEE-EccCCHHH--HHHCCCC-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 3444 44777766 4444444 455777888899999999999999999998754
No 64
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=40.13 E-value=85 Score=18.99 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=30.1
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHH
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLM 45 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~ 45 (125)
.+|+--.+.|++|.+-.=.+..+...+....-|...+..+|-
T Consensus 32 ~~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~~la 73 (96)
T PF11080_consen 32 RAGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLARGLA 73 (96)
T ss_pred hcCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHHHHh
Confidence 367778899999998776666666555556666667766664
No 65
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=39.96 E-value=1.2e+02 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=21.6
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCC
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKP 27 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~ 27 (125)
||..++++-|+|.+|.++.+.+...+
T Consensus 201 ~gv~~vA~Pv~~~~g~~~aalsv~~p 226 (257)
T PRK15090 201 EGLRCIAVPVFDRFGVVIAGLSISFP 226 (257)
T ss_pred cCCEEEEEEEECCCCCEEEEEEEEee
Confidence 67889999999999999887775443
No 66
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=37.02 E-value=47 Score=24.66 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=36.1
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
+|-|.+|++ +....++ ...-..+=+.++..-++++.++|++.|.++.=|
T Consensus 25 iIMDGNrRw--Ak~~gl~-~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFS 73 (322)
T PTZ00349 25 IIMDGNRRF--AKEKGLH-SAIGHFMGSKALIQIIEICIKLKIKILSVFSFS 73 (322)
T ss_pred EEcCCCHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 445777776 3333343 344677778899999999999999999998644
No 67
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.81 E-value=49 Score=23.47 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=36.7
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
||-|.+|.+ +....++ ...-..+=+..+.+-++++.++|++.|.++.=|.
T Consensus 15 iImDGNrRw--Ak~~gl~-~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~ 64 (239)
T PRK14839 15 IIMDGNGRW--ATARGLP-RLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSS 64 (239)
T ss_pred EEcCCCHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEech
Confidence 455777776 3333333 4556778888899999999999999999987553
No 68
>PRK13189 peroxiredoxin; Provisional
Probab=36.67 E-value=1.4e+02 Score=20.59 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=30.3
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|++|.+.......+. ...+..|++.++.+|+...+.|
T Consensus 128 ~tfIID~~G~Ir~~~~~~~~--~gr~~~eilr~l~alq~~~~~~ 169 (222)
T PRK13189 128 AVFIIDPKGIIRAILYYPQE--VGRNMDEILRLVKALQTSDEKG 169 (222)
T ss_pred EEEEECCCCeEEEEEecCCC--CCCCHHHHHHHHHHhhhHhhcC
Confidence 57888999988766543332 3345779999999999877664
No 69
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.61 E-value=44 Score=24.50 Aligned_cols=50 Identities=12% Similarity=-0.003 Sum_probs=36.3
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
||-|.+|.+ +....++ ...-..+=+.++..-++++.++|++.|.++.=|.
T Consensus 73 iIMDGNrRw--Ak~~gl~-~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFSt 122 (296)
T PRK14827 73 IVMDGNGRW--ATQRGLA-RTEGHKMGEAVVIDIACGAIELGIKWLSLYAFST 122 (296)
T ss_pred EeccCchHH--HHHCCCC-HhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecc
Confidence 445777766 3333333 4556677778899999999999999999987553
No 70
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.87 E-value=62 Score=23.06 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=36.2
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNS 63 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~ 63 (125)
||-|.++.+ +....++ ...-..+=+..+.+-++++.++|++.|.++.=|..
T Consensus 20 iImDGNrRw--Ak~~g~~-~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~e 70 (249)
T PRK14834 20 IIMDGNGRW--AKARGLP-RAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSE 70 (249)
T ss_pred EEecCchHH--HHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence 444777766 3333333 34456777788899999999999999999985543
No 71
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.35 E-value=58 Score=23.11 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=36.3
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
||-|.++.+ +....++ ...-..+=+..+..-++++.++|++.|.++.=|.
T Consensus 14 iImDGNrRw--Ak~~gl~-~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~ 63 (241)
T PRK14842 14 VIMDGNGRW--AESQGKK-RSEGHREGANAIDRLMDASLEYGLKNISLYAFST 63 (241)
T ss_pred EEcCCCHHH--HHHCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeeh
Confidence 445777766 3333333 4556677788899999999999999999997553
No 72
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.25 E-value=56 Score=23.39 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=36.9
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
||-|.+|.+ +....++ ...-..+=+..+.+-++++.++|++.|.++.=|.
T Consensus 24 iImDGNrRw--Ak~~gl~-~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~ 73 (253)
T PRK14832 24 VIMDGNGRW--ATSQGLP-RIAGHRQGARTLKELLRCCKDWGIKALTAYAFST 73 (253)
T ss_pred EECCCCHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeeh
Confidence 455777776 3333333 4556778888899999999999999999987553
No 73
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.07 E-value=56 Score=23.18 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=36.9
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
+|-|.+|.+ +....++ ...-..+=+.++..-++++.++|++.|.++.=|.
T Consensus 20 iImDGNrRw--Ak~~g~~-~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~ 69 (243)
T PRK14829 20 VVMDGNGRW--ATQRGLK-RTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFST 69 (243)
T ss_pred EecCCCHHH--HHHCCCC-hhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecc
Confidence 444777766 3333333 4556778888999999999999999999987553
No 74
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=33.95 E-value=58 Score=22.73 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=36.6
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
||-|.+|.+ +....++ ...-..+=+..+..-++++.++|++.|.++.=|.
T Consensus 6 iImDGNrRw--A~~~gl~-~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~ 55 (221)
T cd00475 6 FIMDGNRRW--AKQRGMD-RIEGHKAGAEKLRDILRWCLELGVKEVTLYAFST 55 (221)
T ss_pred EecCCCHHH--HHHCCCC-hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeech
Confidence 555777776 3333333 4556778888899999999999999999986443
No 75
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=33.79 E-value=1.1e+02 Score=18.63 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=34.8
Q ss_pred EEEeCCCCCEEEEecccCCC-----CCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 9 CIIRNCEGAVMVTATSKKPC-----LGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 9 ~vird~~g~~i~~~~~~~~~-----~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
+-+.|..|.++...+.-..+ -.++.-|+. +....++.+.++|++.|.+.--.
T Consensus 14 vtlTd~~G~~~~~~S~G~~gfK~~rk~t~~Aa~~-~a~~~~~~~~~~gi~~v~v~ikG 70 (110)
T PF00411_consen 14 VTLTDLKGNVLFWSSAGSLGFKGARKSTPYAAQQ-AAEKIAKKAKELGIKTVRVKIKG 70 (110)
T ss_dssp EEEEETTSEEEEEEETTTSSTTTTCGSSHHHHHH-HHHHHHHHHHCTTEEEEEEEEES
T ss_pred EEEECCCCCEEEEEeccccccccccccCHHHHHH-HHHHHHHHHHHcCCeEEEEEEcC
Confidence 34678899988765533221 345555554 44667788899999999888543
No 76
>PLN02182 cytidine deaminase
Probab=33.68 E-value=1.1e+02 Score=23.01 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=28.0
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCC--hhHHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGD--VEITEVLAILGGL 44 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~--~~~AE~~Al~~al 44 (125)
-+|.+++..+|++..+.-.-..+..- ...||-.|+-.++
T Consensus 67 ~VGAa~l~~sG~iy~GvNVEnas~pl~~tICAEr~AI~~A~ 107 (339)
T PLN02182 67 KVGAVGRASSGRVYLGVNVDFPGLPLHHSIHAEQFLVTNLA 107 (339)
T ss_pred eeeEEEEeCCCCEEEEEEeecCCCccCCccCHHHHHHHHHH
Confidence 47999999999988877643332222 5689999888775
No 77
>PLN02402 cytidine deaminase
Probab=32.90 E-value=1.2e+02 Score=22.44 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=38.3
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCC--hhHHHHHHHHHHHHHHHHhCcccEEEE----eCcHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGD--VEITEVLAILGGLMLAAEVTLSPLVIE----SDSNSVTKFI 68 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~--~~~AE~~Al~~al~~a~~~~~~~v~~e----sDs~~vv~~l 68 (125)
-+|.+++..+|++..+...-.....- ...||..|+..++..-. ..+..|.+- +.|..++.-+
T Consensus 47 ~VGAa~l~~~G~i~~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~-~~i~~iaV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 47 HVGAVGLGSSGRIFLGVNLEFPGLPLHHSVHAEQFLITNLTLNAE-PHLKYVAVSAAPCGHCRQFFQEI 114 (303)
T ss_pred eeeEEEEeCCCCEEEEEeeecCCCCCCCcccHHHHHHHHHHHcCC-CceEEEEEEeCCCcccHHHHHHh
Confidence 47899999999988776532222212 56999999888774421 234455443 3455555555
No 78
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=32.90 E-value=1.3e+02 Score=18.84 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCEEEEecccCCC------CCChhHHHHHHHHHHHHHHHHhCcccEEEE
Q 044837 7 LGCIIRNCEGAVMVTATSKKPC------LGDVEITEVLAILGGLMLAAEVTLSPLVIE 58 (125)
Q Consensus 7 ~G~vird~~g~~i~~~~~~~~~------~~~~~~AE~~Al~~al~~a~~~~~~~v~~e 58 (125)
+.-|+.|..|.++.+.+..-.. ..+...|...+...|-+ |.+.|+..++|.
T Consensus 37 yAQvidd~~~~tl~saST~e~~~k~~~~~~n~~aa~~vG~~la~r-a~~~gi~~vvfD 93 (117)
T PRK05593 37 YAQVIDDVKGKTLASASTLEKDVRAGLKGGNKEAAKKVGKLIAER-AKAKGIKQVVFD 93 (117)
T ss_pred EEEEEECCCCEEEEEEecCcHhHhccccCCCHHHHHHHHHHHHHH-HHHCCCCEEEEc
Confidence 3457778778787766632111 34445566666555543 677899998775
No 79
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=32.62 E-value=1.5e+02 Score=20.81 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=41.5
Q ss_pred CCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEE-E----eCcHHHHHHHHcCC
Q 044837 16 GAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVI-E----SDSNSVTKFILKGI 72 (125)
Q Consensus 16 g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~-e----sDs~~vv~~l~~~~ 72 (125)
+.++...... ...++..+|.+|.+.+|+.+..++.++..| . .||..-++.+....
T Consensus 94 ~~~lt~~~~~--~~~~n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~ds~a~~k~~k~~~ 153 (225)
T COG3341 94 YSWLTESSEF--SIKSNDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGNDSWAYFKYVKDKC 153 (225)
T ss_pred ceeeeeeccc--ccccCchHHHHHHhccccccccccCccceeeccCCcchhHHHHHHHhhhh
Confidence 3455544432 267788999999999999999998877766 5 69988888887643
No 80
>CHL00041 rps11 ribosomal protein S11
Probab=32.52 E-value=1.3e+02 Score=18.74 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=33.4
Q ss_pred EEeCCCCCEEEEecccC-----CCCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEGAVMVTATSKK-----PCLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g~~i~~~~~~~-----~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..|+++...+.-. ..-.++.-|+..| ....+.+.++|++.|.+..
T Consensus 28 TlTd~~G~~l~~~S~G~~gfKg~rK~T~~Aa~~~a-~~~~~~~~~~gi~~v~I~i 81 (116)
T CHL00041 28 TVTDVRGRVISWSSAGACGFKGARKGTPFAAQTAA-ENAIRTVIDQGMKRAEVMI 81 (116)
T ss_pred EEEcCCCCEEEEEecCceeeCCCccCCHHHHHHHH-HHHHHHHHHcCCcEEEEEE
Confidence 46688888887665332 1245666666555 4677788899999988875
No 81
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.98 E-value=67 Score=22.80 Aligned_cols=52 Identities=13% Similarity=-0.067 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
-+|+ |-|.++.+ +....++ ...-..+=+..+.+-++++.++|++.|.++.=|
T Consensus 13 HVAi-ImDGNrRw--A~~~gl~-~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS 64 (242)
T PRK14838 13 HIAI-IMDGNGRW--AKERGKE-RSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64 (242)
T ss_pred EEEE-eccCCHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 3444 44777766 3333333 455677778889999999999999999998754
No 82
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=30.95 E-value=39 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=22.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhC
Q 044837 28 CLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 28 ~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
...|++.+.++++-.|+++..+.|
T Consensus 274 e~gTpn~~~~i~l~aAl~~~~~ig 297 (405)
T COG0520 274 EAGTPNIAGAIGLAAALDYLLEIG 297 (405)
T ss_pred ccCCchHHHHHhHHHHHHHHHHHh
Confidence 379999999999999999999888
No 83
>PRK10057 rpsV 30S ribosomal subunit S22; Reviewed
Probab=30.89 E-value=11 Score=18.85 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=14.9
Q ss_pred CcccEEEEeCcHHHHHHHH
Q 044837 51 TLSPLVIESDSNSVTKFIL 69 (125)
Q Consensus 51 ~~~~v~~esDs~~vv~~l~ 69 (125)
.-++|.+|+|...+|+.-.
T Consensus 19 nqrKvV~Egd~~t~vn~~t 37 (44)
T PRK10057 19 NQRKVVTEGDKSSVVNNPT 37 (44)
T ss_pred cceeEEeeCCcceeEeccc
Confidence 3478999999999987433
No 84
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=30.35 E-value=1e+02 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhCcccEEEEe
Q 044837 37 VLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 37 ~~Al~~al~~a~~~~~~~v~~es 59 (125)
+..|+.+|+.+.+.|+..|.+|.
T Consensus 84 A~~Lf~~LR~~D~~~~~~I~ie~ 106 (125)
T PF03481_consen 84 ARNLFAALRELDELGVDLILIEG 106 (125)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEee
Confidence 45699999999999999999994
No 85
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.58 E-value=75 Score=22.63 Aligned_cols=49 Identities=16% Similarity=-0.004 Sum_probs=36.4
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
||-|.++.+ +....++ ...-..+=+.++..-+.++.++|++.|.++.=|
T Consensus 26 iImDGNrRw--A~~~gl~-~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS 74 (249)
T PRK14831 26 VIMDGNGRW--AKRRGLP-RIMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74 (249)
T ss_pred EecCCcHHH--HHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 444777766 3333333 455677888889999999999999999999766
No 86
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=29.19 E-value=42 Score=21.78 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=22.6
Q ss_pred HHhhCCCceEEEEecCCcchHHHHHHhhhhc
Q 044837 87 VLIDQDNQYRVVYTSRSCKLVTHDLAKMALA 117 (125)
Q Consensus 87 ~l~~~~~~~~~~~v~R~~N~~Ad~LAk~a~~ 117 (125)
.+...|...+..-+.|+||..++.|++.-..
T Consensus 93 ~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g 123 (151)
T PF05903_consen 93 SLSREFTGDSYHLLNRNCNHFSDALCQFLTG 123 (151)
T ss_dssp HHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS
T ss_pred HHHhhccCCcchhhhhhhhHHHHHHHHHhCC
Confidence 4444688888888999999999999887543
No 87
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=29.18 E-value=75 Score=22.67 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhCcccEEEEe
Q 044837 39 AILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 39 Al~~al~~a~~~~~~~v~~es 59 (125)
-.++|||+|-.+|+.+|.+-+
T Consensus 172 VaY~ALQIaY~LGF~~I~iaG 192 (269)
T PRK09822 172 IAYTAIQVAYSLKYGRIICSG 192 (269)
T ss_pred hHHHHHHHHHHcCCCEEEEEe
Confidence 357899999999999999875
No 88
>PRK10425 DNase TatD; Provisional
Probab=28.43 E-value=35 Score=24.22 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.6
Q ss_pred HHHHhCcccEEEEeCcHHH
Q 044837 46 LAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 46 ~a~~~~~~~v~~esDs~~v 64 (125)
.+......++.+|||+..+
T Consensus 189 ~~~~ipldrlLlETDaP~l 207 (258)
T PRK10425 189 LLPLIPAERLLLETDAPYL 207 (258)
T ss_pred HHHhCChHHEEEeccCCCC
Confidence 3466788999999999875
No 89
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=28.07 E-value=1.3e+02 Score=18.17 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcchHH-HHHHHHHHHhhCCCceEEEEecCCc
Q 044837 41 LGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGELD-LIICEIRVLIDQDNQYRVVYTSRSC 104 (125)
Q Consensus 41 ~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~-~~i~~i~~l~~~~~~~~~~~v~R~~ 104 (125)
..+.+.|.+++.+-|++.|+|-.....+.+..+...-+. .--....+.+.-++.+.-.+++...
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~ 70 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFD 70 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHS
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEecccc
Confidence 446788899999999999999999999987554322110 0013344445567787776666554
No 90
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=27.67 E-value=24 Score=21.87 Aligned_cols=37 Identities=35% Similarity=0.341 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHhCcccE-EEEeCcHHHHHHHHc
Q 044837 32 VEITEVLAILGGLMLAAEVTLSPL-VIESDSNSVTKFILK 70 (125)
Q Consensus 32 ~~~AE~~Al~~al~~a~~~~~~~v-~~esDs~~vv~~l~~ 70 (125)
...+|-+|+-.||-.. .=+.+. .+..||...++.+..
T Consensus 61 ~~HSEKlAiafgli~~--~vvkn~~RvC~DCH~~~K~iS~ 98 (116)
T PF14432_consen 61 CYHSEKLAIAFGLINT--RVVKNLKRVCGDCHSFIKFISK 98 (116)
T ss_pred hccHHHHHHHhcccce--eEEecCCccchHHHHHHHHHHH
Confidence 4567777777776544 334445 778888888888765
No 91
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=27.61 E-value=1.9e+02 Score=20.91 Aligned_cols=54 Identities=11% Similarity=0.000 Sum_probs=41.0
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
+--+++|. |.++ -.+..+.+. ...-.+|=+.++.+=|+++.++|++-|.++.=|
T Consensus 37 P~HVaFIM-DGNR--R~AKk~~L~-~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFS 90 (271)
T KOG1602|consen 37 PRHVAFIM-DGNR--RYAKKRGLE-TSEGHEAGFEALKEILELCKELGIKEVTVFAFS 90 (271)
T ss_pred cceeEEEe-cCch--HHHHhcCCC-cccchHHHHHHHHHHHHHHHHcCCcEEEEEEEe
Confidence 34455555 5444 446666666 478899999999999999999999999988644
No 92
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=27.58 E-value=2.2e+02 Score=20.01 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=19.1
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|. |.++.+.+..
T Consensus 203 ~gv~~iA~PV~~~-g~~vaalsv~ 225 (263)
T PRK09834 203 PKIASIAVPVRSG-QRVLGCLNLV 225 (263)
T ss_pred CCceEEEeeEecC-CceEEEEEee
Confidence 6788999999997 9998877654
No 93
>PF05854 MC1: Non-histone chromosomal protein MC1; InterPro: IPR008674 This family consists of archaeal chromosomal protein MC1 sequences which protect DNA against thermal denaturation [].; GO: 0042262 DNA protection; PDB: 1T23_A 2KHL_A.
Probab=26.62 E-value=1.2e+02 Score=18.20 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHH
Q 044837 9 CIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGG 43 (125)
Q Consensus 9 ~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~a 43 (125)
+++||.+|.-+..+++..+ -+|-+.|...|
T Consensus 6 F~Lr~~~G~E~gvFtG~~P-----rqAAlKAA~Rg 35 (93)
T PF05854_consen 6 FALRDEDGNEIGVFTGAQP-----RQAALKAARRG 35 (93)
T ss_dssp EEEETTTTSEEEEEEESSC-----CHHHHHHHCCT
T ss_pred EEEEcCCCccccEEeCCCH-----HHHHHHHhhcC
Confidence 7899999999988887644 35544444443
No 94
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=26.61 E-value=2e+02 Score=21.74 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHH
Q 044837 30 GDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFIL 69 (125)
Q Consensus 30 ~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~ 69 (125)
..+..+|..|+...+.+|...+.+=.+.-.-+..-++.+.
T Consensus 191 ~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~ 230 (411)
T TIGR00857 191 ARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIV 230 (411)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHH
Confidence 4578999999999999999998777777777776666664
No 95
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.52 E-value=61 Score=23.17 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=35.5
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+|+ |-|.+|.+ +....++ ...-..+=+..+.+-++++.++|++.|.++.
T Consensus 17 HVAi-ImDGNrRw--A~~~gl~-~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYa 66 (253)
T PRK14836 17 HIAI-IMDGNGRW--AKRRGKP-RVEGHRAGVRAVRRTIEFCLEKGIEMLTLFA 66 (253)
T ss_pred eEEE-ecCCcHHH--HHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEehhH
Confidence 3444 44767666 3333333 3556677778899999999999999999886
No 96
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=26.49 E-value=1.9e+02 Score=18.77 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=30.3
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCc
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTL 52 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~ 52 (125)
..++-|.+|.++.......+ ......|++..+..++.+.+.|.
T Consensus 122 ~~~lID~~G~I~~~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~ 164 (173)
T cd03015 122 GTFIIDPEGIIRHITVNDLP--VGRSVDETLRVLDALQFVEEHGE 164 (173)
T ss_pred EEEEECCCCeEEEEEecCCC--CCCCHHHHHHHHHHhhhhhhcCC
Confidence 57888999998877754333 22345778888888888877663
No 97
>PRK07627 dihydroorotase; Provisional
Probab=26.09 E-value=2.1e+02 Score=21.93 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHH
Q 044837 31 DVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFIL 69 (125)
Q Consensus 31 ~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~ 69 (125)
-+..+|..|+...+.+|...+.+--++-.-|..-++.+.
T Consensus 206 ~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~ 244 (425)
T PRK07627 206 VPVAAETIALHTIFELMRVTGARVHLARLSSAAGVALVR 244 (425)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHH
Confidence 378999999999999999999877777777877777775
No 98
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=26.02 E-value=1.2e+02 Score=22.01 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 33 EITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 33 ~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
+-.=..+...++.+....|+..|++||=
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETV 130 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETV 130 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCC
Confidence 3344457888999999999999999983
No 99
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=25.79 E-value=1.6e+02 Score=17.66 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=33.4
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCc
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTL 52 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~ 52 (125)
|.|-...+|++.....-+-.-..+-..|....++.|-++..++|-
T Consensus 44 g~I~K~~~ge~k~H~FIRsD~~~s~edA~e~~lrKak~~IDq~Gd 88 (91)
T PF10115_consen 44 GRIEKEIDGETKTHRFIRSDLFPSREDAAEFMLRKAKQFIDQQGD 88 (91)
T ss_pred EEEEeccCCcEEEEEEEEccccCCHHHHHHHHHHHHHHHHHhhcc
Confidence 666667777776655444456778888988999999888887763
No 100
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=25.76 E-value=1.2e+02 Score=18.79 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCcccEEEEeCcHH
Q 044837 39 AILGGLMLAAEVTLSPLVIESDSNS 63 (125)
Q Consensus 39 Al~~al~~a~~~~~~~v~~esDs~~ 63 (125)
.+...+++|.++|+++|.+++....
T Consensus 106 ll~~~~~~a~~~g~~~i~l~~~~~N 130 (150)
T PLN02706 106 IIEALTEHARSAGCYKVILDCSEEN 130 (150)
T ss_pred HHHHHHHHHHHcCCCEEEEEecccc
Confidence 4567788999999999999987554
No 101
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=25.59 E-value=1.1e+02 Score=15.76 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=22.4
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
.+.+=|.+++.+|++|. .+..+. +- .++..||+..++..
T Consensus 3 ~g~~~f~L~a~ng~via-sse~Y~---sk-----~~a~~~I~~Vk~~a 41 (49)
T PF07411_consen 3 DGQFRFRLKAGNGEVIA-SSEGYS---SK-----ADAEKGIESVKKNA 41 (49)
T ss_dssp TSEEEEEEE-TTS-EEE-EBEEBS---SH-----HHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCEEE-ecCCcC---CH-----HHHHHHHHHHHHhC
Confidence 35677899999999998 333332 21 24455666655544
No 102
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=25.57 E-value=74 Score=22.28 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHHhCcccEEEEeCcHHH
Q 044837 43 GLMLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 43 al~~a~~~~~~~v~~esDs~~v 64 (125)
.-+.+......++.+|||+...
T Consensus 188 ~~~~~~~ip~drillETD~P~~ 209 (255)
T PF01026_consen 188 VRELIKAIPLDRILLETDAPYL 209 (255)
T ss_dssp HHHHHHHS-GGGEEEE-BTTSS
T ss_pred HHHHHhcCChhhEEEcCCCCcC
Confidence 4455678899999999998654
No 103
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.46 E-value=1.4e+02 Score=21.35 Aligned_cols=54 Identities=11% Similarity=-0.057 Sum_probs=36.8
Q ss_pred EEEEEEeCCCCCEEEEec--ccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 6 GLGCIIRNCEGAVMVTAT--SKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~--~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
-+| ||-|.+|.+-...- ..++ ...-..+=+.++..-++++.++|++.|.++.=|
T Consensus 21 HVa-iImDGNrRwAk~~~~~~gl~-~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS 76 (250)
T PRK14840 21 HVA-IIMDGNRRWYRKHEQFCQKR-AISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76 (250)
T ss_pred eEE-EEcCCChHHHhhCCCccCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 344 45587887732210 0122 344577788889999999999999999998755
No 104
>PF12194 Ste5_C: Protein kinase Fus3-binding; InterPro: IPR021106 The Saccharomyces cerevisiae pheromone response pathway involves a cascade of 3 MAP kinases Ste11, Ste7, and Fus3. Ste5 is an essential element of this cascade, acting as a scaffold for each of the MAP kinases prior to signalling []. This entry represents the Fus3-binding domain of Ste5, also known as the minimal scaffold domain. It acts as a co-catalyst, binding Fus3 and promoting its phosphorylation by Ste7 []. In the absence of this domain, Fus3 is an extremely poor substrate for Ste7. The requirement for both Ste7 and this domain in Fus3 activation ensures that Fus3 is selectively activated by the mating pathway and not by other pathways that also utilise Ste7.; PDB: 3FZE_A.
Probab=25.40 E-value=19 Score=24.43 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEecCCcchHHHHHHhh
Q 044837 78 LDLIICEIRVLIDQDNQYRVVYTSRSCKLVTHDLAKM 114 (125)
Q Consensus 78 ~~~~i~~i~~l~~~~~~~~~~~v~R~~N~~Ad~LAk~ 114 (125)
.-.+..-++.|.-+|+.+++..|.++++-++..+++.
T Consensus 34 ~~~i~Nsl~AL~~Kf~~~k~C~Vd~~g~v~~~~~~~~ 70 (191)
T PF12194_consen 34 YIVIYNSLKALTLKFPDLKLCIVDSEGFVVTYGSVKD 70 (191)
T ss_dssp HHHHHHHHHHHHHH-TT-EEEEEETTSBEEEEEEHHH
T ss_pred EEeehHHHHHHHcccCcceEEEEeCCCCEEEeeeHhh
Confidence 3456788889999999999999999998655554444
No 105
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=25.32 E-value=99 Score=18.74 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=15.5
Q ss_pred eEEEEEEeCCCCCEEEEec
Q 044837 5 AGLGCIIRNCEGAVMVTAT 23 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~ 23 (125)
+++++++.|++|+++....
T Consensus 2 ~av~~~i~~~~~~vLL~~r 20 (130)
T cd04681 2 AAVGVLILNEDGELLVVRR 20 (130)
T ss_pred ceEEEEEEcCCCcEEEEEe
Confidence 5788999999999887653
No 106
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=25.26 E-value=66 Score=24.92 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=27.7
Q ss_pred eCcHHHHHHHHcCCCCcchHHHHHHHHHHHhhCC
Q 044837 59 SDSNSVTKFILKGISCRGELDLIICEIRVLIDQD 92 (125)
Q Consensus 59 sDs~~vv~~l~~~~~~~~~~~~~i~~i~~l~~~~ 92 (125)
+||..++..+++..+....+..+++.+..++..+
T Consensus 414 sd~~sl~~~~~~~~~~~~~Y~~L~~~~~~~lD~y 447 (448)
T PF12458_consen 414 SDCLSLARLVNKEDPYAALYEDLIKACTRILDAY 447 (448)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHhhhhcc
Confidence 6899999999988777777888888888887643
No 107
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.87 E-value=1.4e+02 Score=21.46 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCcccEEEE--------eCcHHHHHHHH
Q 044837 40 ILGGLMLAAEVTLSPLVIE--------SDSNSVTKFIL 69 (125)
Q Consensus 40 l~~al~~a~~~~~~~v~~e--------sDs~~vv~~l~ 69 (125)
+..|+++|.++|++-|.+- -|+...-+.+.
T Consensus 98 M~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~ 135 (287)
T COG3623 98 MEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIE 135 (287)
T ss_pred HHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHH
Confidence 4579999999999998874 46665544443
No 108
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=24.86 E-value=2.5e+02 Score=19.69 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=21.1
Q ss_pred CcceEEEEEEeCCCCCEEEEecccC
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKK 26 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~ 26 (125)
||..++++-|+|..|.++.+.+...
T Consensus 192 ~gv~~iAaPi~~~~g~v~aaisv~~ 216 (246)
T COG1414 192 PGVRCIAAPIFDAGGEVVAAISVSG 216 (246)
T ss_pred cCcEEEEEEEECCCCCEEEEEEEee
Confidence 6788999999999999998876543
No 109
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=24.82 E-value=2.3e+02 Score=19.15 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGL 44 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al 44 (125)
-+|+++|-+.|++..+.-.-.-.......||-.|+..++
T Consensus 43 kVGA~~r~ssGrif~G~NVEn~~~~~sIcAEr~ai~~l~ 81 (173)
T KOG0833|consen 43 KVGAAGRASSGRIFLGVNVENASYHHSICAERFAIANLA 81 (173)
T ss_pred ceEEEEEecCCcEEEeeeecccCCCCcccHHHHHHHHHH
Confidence 479999999999877665433335556678887776554
No 110
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=24.79 E-value=2e+02 Score=21.03 Aligned_cols=48 Identities=10% Similarity=-0.017 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCccc
Q 044837 7 LGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSP 54 (125)
Q Consensus 7 ~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~ 54 (125)
.|+.+++.+|.+..+...--........||-.|+..++..-...++..
T Consensus 197 vgaal~~~~g~i~~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~ 244 (283)
T TIGR01355 197 SGVALLDKEGKVYRGWYIESAAFNPSLGPVQAALVDFMANGGGKGFED 244 (283)
T ss_pred eeEEEEeCCCCEEEEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhh
Confidence 688888888998776553333455667899999888775422334443
No 111
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=24.73 E-value=2.2e+02 Score=19.04 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.2
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHh
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEV 50 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~ 50 (125)
|.+|-|++|.+.......++ ...+.-|++..+.+++.....
T Consensus 129 ~~fiID~~G~i~~~~~~~~~--~~r~~~e~l~~l~a~~~~~~~ 169 (199)
T PTZ00253 129 GLFIIDPKGMLRQITVNDMP--VGRNVEEVLRLLEAFQFVEKH 169 (199)
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHhhhhHHhc
Confidence 67888999998876554333 445678888999999887654
No 112
>PRK10812 putative DNAse; Provisional
Probab=24.68 E-value=47 Score=23.67 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=15.5
Q ss_pred HHHHHhCcccEEEEeCcHHH
Q 044837 45 MLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 45 ~~a~~~~~~~v~~esDs~~v 64 (125)
+++......++.+|||+..+
T Consensus 190 ~~~~~ipldrlLlETD~P~~ 209 (265)
T PRK10812 190 DAARYVPLDRLLVETDSPYL 209 (265)
T ss_pred HHHHhCChhhEEEecCCCCC
Confidence 34556678999999999754
No 113
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=24.20 E-value=2.4e+02 Score=21.02 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc
Q 044837 31 DVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 31 ~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~ 70 (125)
-+..+|..|+...+.+|...|.+-.+.-.-+..-++.+..
T Consensus 151 ~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~~ 190 (361)
T cd01318 151 RDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKK 190 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHH
Confidence 4789999999999999999987766666666667777764
No 114
>PRK07369 dihydroorotase; Provisional
Probab=24.19 E-value=2.4e+02 Score=21.58 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=33.3
Q ss_pred CChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHH
Q 044837 30 GDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFIL 69 (125)
Q Consensus 30 ~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~ 69 (125)
..+..+|..++...+.+|...|.+-.+.-.-|..-++.+.
T Consensus 206 ~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~ 245 (418)
T PRK07369 206 GDPASAETTALAALLELVAAIGTPVHLMRISTARSVELIA 245 (418)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHH
Confidence 3478999999999999999999877777777777777775
No 115
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=24.13 E-value=1.4e+02 Score=17.16 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHh----CcccEEEEeCcHHHHHHHH
Q 044837 33 EITEVLAILGGLMLAAEV----TLSPLVIESDSNSVTKFIL 69 (125)
Q Consensus 33 ~~AE~~Al~~al~~a~~~----~~~~v~~esDs~~vv~~l~ 69 (125)
..||+.|++. ++-.+ |--.+.|+||+..+.+.+-
T Consensus 4 ~~AELaAlir---~~G~l~~~~~~~~l~~~ten~~vARri~ 41 (86)
T PF10298_consen 4 RIAELAALIR---FSGSLSISNGRISLEISTENAAVARRIY 41 (86)
T ss_dssp HHHHHHHHHH---HHEEECTTTTEEEE--EES-HHHHHHHH
T ss_pred HHHHHHHHHH---hCCEEEEECCEEEEEEEeCCHHHHHHHH
Confidence 4678887753 33333 3458888999988876554
No 116
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=24.06 E-value=2.3e+02 Score=20.70 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=38.4
Q ss_pred EEEEEEeCCCCCEEEEecccCCC--CCChhHHHHHHHHHHHHHHHHhCcccEEE----EeCcHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPC--LGDVEITEVLAILGGLMLAAEVTLSPLVI----ESDSNSVTKFIL 69 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~--~~~~~~AE~~Al~~al~~a~~~~~~~v~~----esDs~~vv~~l~ 69 (125)
-+|.+++..+|++..+...-+.+ ..-...||-.|+..++..- +..+..|.+ .+-|..++..+.
T Consensus 44 ~VGAall~~~G~iy~GvNvE~~nas~~~tiCAEr~Ai~~Av~~G-e~~i~~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 44 NVGAVGRGSSGRFYLGVNVEFPGLPLHHSIHAEQFLISHLALNN-ERGLNDLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred eeeEEEEeCCCCEEEEEEeccCCCCCCccccHHHHHHHHHHHcC-CCceEEEEEEeCCcchhHHHHHHhc
Confidence 37899999999988876643212 2235689999987776432 123444333 345555655553
No 117
>PLN02660 pantoate--beta-alanine ligase
Probab=23.74 E-value=1.4e+02 Score=21.78 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=26.3
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAE 49 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~ 49 (125)
++|+.+|--+.+ +....+...-.++.+|..+|+.+.+
T Consensus 181 tvRe~dGLA~SS---RN~yLs~~eR~~A~~l~~~L~~~~~ 217 (284)
T PLN02660 181 IVREADGLAMSS---RNVRLSAEEREKALSISRSLARAEE 217 (284)
T ss_pred ceECCCCCeecc---ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 689999965433 2344566667888889999988754
No 118
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=23.69 E-value=1.6e+02 Score=19.41 Aligned_cols=34 Identities=3% Similarity=-0.111 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcC
Q 044837 38 LAILGGLMLAAEVTLSPLVIESDSNSVTKFILKG 71 (125)
Q Consensus 38 ~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~ 71 (125)
.-.-.|.+..+++|+++|.+-|.+..=+..|.+.
T Consensus 126 R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 126 RDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp --THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 3444688999999999999999998888888764
No 119
>PF14563 DUF4444: Domain of unknown function (DUF4444); PDB: 3BFM_A.
Probab=23.62 E-value=65 Score=16.29 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=8.6
Q ss_pred EEEEEeCCCCCEEEEe
Q 044837 7 LGCIIRNCEGAVMVTA 22 (125)
Q Consensus 7 ~G~vird~~g~~i~~~ 22 (125)
+|+++||..+..+..-
T Consensus 21 FGmLLr~~~~T~LIPL 36 (42)
T PF14563_consen 21 FGMLLRDDDTTHLIPL 36 (42)
T ss_dssp --EEEE-SS-EEEE-G
T ss_pred cceEEEeCCccEEEEc
Confidence 6899999888776543
No 120
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=23.37 E-value=1.4e+02 Score=21.26 Aligned_cols=53 Identities=15% Similarity=-0.009 Sum_probs=37.6
Q ss_pred EEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHH
Q 044837 9 CIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 9 ~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~v 64 (125)
++|-|.+|.+-. .+.++ ...-..+=..++.+-++++.++|++.+.++..|..-
T Consensus 21 aiImDGN~RwAk--~~~~~-r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN 73 (245)
T COG0020 21 AIIMDGNRRWAK--KRGLP-RIEGHKAGAKALREILEWCLELGIKYLTLYAFSTEN 73 (245)
T ss_pred EEEecCChHHHH--hCCCC-hhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhh
Confidence 355576776632 22222 344556667788999999999999999999988654
No 121
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=23.31 E-value=2e+02 Score=17.95 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=30.4
Q ss_pred EEeCCCCC-EEEEecccCCC-----CCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEGA-VMVTATSKKPC-----LGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g~-~i~~~~~~~~~-----~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..|. ++...+.-..+ -.++.-|+. |...+.+.+.++|++.|.+..
T Consensus 17 tvTD~~G~~~~~~~S~G~~g~kg~kk~TpyAAq~-aa~~~~~~~~~~Gi~~v~v~i 71 (114)
T TIGR03628 17 TITDITGAETIARSSGGMVVKADRDESSPYAAMQ-AAGRAAEKAKERGITGLHIKV 71 (114)
T ss_pred EEEcCCCCEEEEEecCcceEeCCCccCCHHHHHH-HHHHHHHHHHHcCCcEEEEEE
Confidence 35677774 34433322111 356666664 445778888899999988875
No 122
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.26 E-value=1.3e+02 Score=19.18 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=24.4
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLA 47 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a 47 (125)
-+|+|-||.....-..+..++-.+.+...|+ .+..+|..|
T Consensus 85 hFgFIcrEs~~~~~~~f~CyVFqc~Se~la~--eI~lti~QA 124 (129)
T cd01269 85 HFGFICRESPEPGLSQYICYVFQCADESLVD--EVMLTLKQA 124 (129)
T ss_pred eEEEEeccCCCCCcceEEEEEEEcCCHHHHH--HHHHHHHHH
Confidence 4789999987554333333444467777766 555555544
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=22.92 E-value=1.2e+02 Score=17.98 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHhhCCCceEEEEecCC
Q 044837 83 CEIRVLIDQDNQYRVVYTSRS 103 (125)
Q Consensus 83 ~~i~~l~~~~~~~~~~~v~R~ 103 (125)
.||..|.+-|..+.+.||.-.
T Consensus 23 ~DI~qlFspfG~I~VsWi~dT 43 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWINDT 43 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECTT
T ss_pred hhHHHHhccCCcEEEEEEcCC
Confidence 678899999999999999753
No 124
>PF14591 AF0941-like: AF0941-like; PDB: 1YOZ_B.
Probab=22.86 E-value=57 Score=20.71 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=25.1
Q ss_pred EEeCcHHHHHHHHcCCCCcchHHHHHHHHHHHhh
Q 044837 57 IESDSNSVTKFILKGISCRGELDLIICEIRVLID 90 (125)
Q Consensus 57 ~esDs~~vv~~l~~~~~~~~~~~~~i~~i~~l~~ 90 (125)
|.+|++.+++.++++....-+...++.++....+
T Consensus 42 Fr~D~e~Il~~~~~Gdi~eEEA~~ll~eL~~~as 75 (127)
T PF14591_consen 42 FRSDLEDILEDYKSGDIDEEEALQLLDELKSYAS 75 (127)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999987766666666666655443
No 125
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=22.83 E-value=1.2e+02 Score=21.34 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhC-cccEEEEeCcHHHHHHHHc
Q 044837 40 ILGGLMLAAEVT-LSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 40 l~~al~~a~~~~-~~~v~~esDs~~vv~~l~~ 70 (125)
+.+.++.|...+ +.+|++-||+..+++.-.+
T Consensus 31 i~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ 62 (228)
T COG1083 31 IGYTIEAALNSKLFDKVVISSDSEEILEEAKK 62 (228)
T ss_pred HHHHHHHHhcCCccceEEEcCCcHHHHHHHHH
Confidence 456788887776 7999999999999987654
No 126
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=22.66 E-value=1.3e+02 Score=18.16 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=14.9
Q ss_pred eEEEEEEeCCCCCEEEEec
Q 044837 5 AGLGCIIRNCEGAVMVTAT 23 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~ 23 (125)
.+++++|.|++|+++....
T Consensus 3 ~~v~~ii~~~~~~iLl~~r 21 (129)
T cd04678 3 VGVGVFVLNPKGKVLLGKR 21 (129)
T ss_pred eEEEEEEECCCCeEEEEec
Confidence 4788888888888887754
No 127
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.56 E-value=1.5e+02 Score=16.37 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhCCCceEEEEec
Q 044837 79 DLIICEIRVLIDQDNQYRVVYTS 101 (125)
Q Consensus 79 ~~~i~~i~~l~~~~~~~~~~~v~ 101 (125)
..++.+||..++.+..+.+.||.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEc
Confidence 35789999999999999998885
No 128
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=22.37 E-value=2.4e+02 Score=18.75 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHHHHh-CcccEEEEeCcHHHHHHHHc
Q 044837 40 ILGGLMLAAEV-TLSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 40 l~~al~~a~~~-~~~~v~~esDs~~vv~~l~~ 70 (125)
+.+.++.|.+. .+.+|++-||+..+.+.+..
T Consensus 27 i~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~ 58 (217)
T PF02348_consen 27 IEYVIERAKQSKLIDEIVVATDDEEIDDIAEE 58 (217)
T ss_dssp HHHHHHHHHHTTTTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHH
Confidence 55667777665 47999999999999998876
No 129
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=22.24 E-value=64 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=17.5
Q ss_pred ceEEEEEEeCCCCCEEEEeccc
Q 044837 4 FAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~ 25 (125)
..|++.++.|.+|+.+...+..
T Consensus 20 ~tgl~~~i~d~~G~~l~~~~~~ 41 (173)
T PF10114_consen 20 ATGLSIVIVDPDGNPLTQPSNF 41 (173)
T ss_pred HHCCcEEEEeCCCCEEeeCCCc
Confidence 3689999999999999555543
No 130
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=22.24 E-value=1.4e+02 Score=21.72 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=25.9
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAE 49 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~ 49 (125)
++|+.+|--+. .+....+...-.++.+|..+|+.+.+
T Consensus 178 tvRe~dGLA~S---SRN~~Ls~~eR~~A~~l~~~L~~a~~ 214 (282)
T TIGR00018 178 IVREEDGLALS---SRNVYLTAEQRKIAPGLYRALQAIAQ 214 (282)
T ss_pred ceECCCCCchh---hccccCCHHHHHHHHHHHHHHHHHHH
Confidence 68999995443 23344566667888889999988754
No 131
>PRK04250 dihydroorotase; Provisional
Probab=22.21 E-value=2.7e+02 Score=21.09 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc
Q 044837 30 GDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 30 ~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~ 70 (125)
..+..+|..|+...+.+|...|.+=-+.-.-+..-++.+..
T Consensus 176 ~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~~~~~i~~ 216 (398)
T PRK04250 176 ERPPEAEVVAIERALEAGKKLKKPLHICHISTKDGLKLILK 216 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH
Confidence 34788999999999999999888766667777777777754
No 132
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=21.96 E-value=1.3e+02 Score=18.81 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhCcccE
Q 044837 34 ITEVLAILGGLMLAAEVTLSPL 55 (125)
Q Consensus 34 ~AE~~Al~~al~~a~~~~~~~v 55 (125)
+.++...+.|+--|+++|++++
T Consensus 63 q~~L~~Ayqgv~~Aw~lgi~k~ 84 (114)
T PF07511_consen 63 QQQLAQAYQGVVDAWSLGITKY 84 (114)
T ss_pred HHHHHHHHHHHHHHHHhCcccc
Confidence 5555566678888999988664
No 133
>PRK05309 30S ribosomal protein S11; Validated
Probab=21.34 E-value=2.3e+02 Score=17.95 Aligned_cols=49 Identities=16% Similarity=0.056 Sum_probs=32.5
Q ss_pred EEeCCCCCEEEEecccCC-----CCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEGAVMVTATSKKP-----CLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~-----~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..|.++...+.-.. .-.++.-|+. +.....+.+.++|++.|.+..
T Consensus 32 tlTd~~G~~~~~~S~G~~gfKg~rK~T~~Aa~~-aa~~~~~~~~~~gi~~v~v~i 85 (128)
T PRK05309 32 TITDRQGNVISWASAGGLGFKGSRKSTPYAAQV-AAEDAAKKAKEHGMKTVEVFV 85 (128)
T ss_pred EEEcCCCCEEEEEecCccEeCCCccCCHHHHHH-HHHHHHHHHHHcCCcEEEEEE
Confidence 466888888765553211 2455665665 445566788899999998875
No 134
>PRK08417 dihydroorotase; Provisional
Probab=20.85 E-value=3.1e+02 Score=20.58 Aligned_cols=39 Identities=13% Similarity=-0.129 Sum_probs=30.9
Q ss_pred ChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHH
Q 044837 31 DVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFIL 69 (125)
Q Consensus 31 ~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~ 69 (125)
-+..+|..|+...+++|...|.+=-+.-.-+..-++.+.
T Consensus 175 rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~ 213 (386)
T PRK08417 175 IPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLD 213 (386)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHH
Confidence 478899999999999999998765566666666666663
No 135
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=61 Score=20.87 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=11.2
Q ss_pred ceEEEEEEeCCCCC
Q 044837 4 FAGLGCIIRNCEGA 17 (125)
Q Consensus 4 ~~g~G~vird~~g~ 17 (125)
++-+|+++||+.|-
T Consensus 47 psqIGviLRDshGi 60 (151)
T KOG0400|consen 47 PSQIGVILRDSHGI 60 (151)
T ss_pred hhHceeeeecccCc
Confidence 34589999999884
No 136
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=20.31 E-value=2.3e+02 Score=17.63 Aligned_cols=40 Identities=8% Similarity=-0.152 Sum_probs=23.7
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHH
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAA 48 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~ 48 (125)
-.++-|++|+.+..++. ++........=+.-++..++..+
T Consensus 83 t~vfl~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 122 (124)
T cd02955 83 LNVFLTPDLKPFFGGTY-FPPEDRYGRPGFKTVLEKIRELW 122 (124)
T ss_pred EEEEECCCCCEEeeeee-cCCCCcCCCcCHHHHHHHHHHHH
Confidence 56888999999988764 44333333333444444554443
No 137
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=20.27 E-value=2.2e+02 Score=17.35 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=32.8
Q ss_pred EEEeCCCCCEEEEecccCC-----CCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 9 CIIRNCEGAVMVTATSKKP-----CLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 9 ~vird~~g~~i~~~~~~~~-----~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
+-+.|..|.++...+.-.. .-.++..|+..| ....+.+.++|+..|.+..
T Consensus 14 itlTd~~g~~~~~~S~G~~gfkg~rk~t~~Aa~~~a-~~~~~~~~~~gi~~v~v~~ 68 (108)
T TIGR03632 14 VTITDPQGNVLSWASAGAVGFKGSKKSTPYAAQLAA-EDAAKKAKEFGMKTVDVYV 68 (108)
T ss_pred EEEEcCCCCEEEEEecCceeeCCCccCCHHHHHHHH-HHHHHHHHHcCCcEEEEEE
Confidence 3467888887765543211 245566666544 4566788899999998875
No 138
>PRK09060 dihydroorotase; Validated
Probab=20.13 E-value=3.1e+02 Score=21.06 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc
Q 044837 32 VEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 32 ~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~ 70 (125)
+..+|..++..++.+|...|.+--+.-..+..-++.+..
T Consensus 208 p~~aE~~av~~~~~la~~~~~~lhi~h~st~~~v~~i~~ 246 (444)
T PRK09060 208 DEEAALLATRRLVRLARETGRRIHVLHVSTAEEIDFLAD 246 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHH
Confidence 678999999999999999998665777777777777754
No 139
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=20.09 E-value=2.8e+02 Score=18.40 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=30.0
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHh
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEV 50 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~ 50 (125)
..+|-|.+|.+........ .......|++..+.+++++.+.
T Consensus 121 ~tfiID~~G~I~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~~ 161 (187)
T TIGR03137 121 GTFVIDPEGVIQAVEITDN--GIGRDASELLRKIKAAQYVAAH 161 (187)
T ss_pred EEEEECCCCEEEEEEEeCC--CCCCCHHHHHHHHHHhhhHHhc
Confidence 4578899999887664322 2334788888999999998776
Done!