Query 044837
Match_columns 125
No_of_seqs 185 out of 1062
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 100.0 7.1E-28 2.4E-32 154.4 12.5 118 2-120 16-135 (141)
2 3u3g_D Ribonuclease H, RNAse H 100.0 3E-28 1E-32 155.7 10.4 117 2-119 16-138 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.9 1.8E-26 6.1E-31 149.5 13.4 116 2-119 15-135 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.9 8.3E-22 2.8E-26 128.2 14.1 112 4-119 25-152 (154)
5 3h08_A RNH (ribonuclease H); R 99.9 2.4E-21 8.4E-26 124.9 8.4 112 2-119 17-145 (146)
6 1jl1_A Ribonuclease HI; RNAse 99.8 6.7E-21 2.3E-25 124.1 9.8 114 2-121 17-146 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.8 2.7E-20 9.3E-25 121.6 10.3 111 2-118 19-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 2.9E-20 1E-24 122.3 8.9 113 2-120 21-150 (166)
9 3qio_A GAG-POL polyprotein; RN 99.8 1.5E-19 5.2E-24 117.1 11.8 108 2-119 25-148 (150)
10 2kq2_A Ribonuclease H-related 99.8 1E-19 3.6E-24 117.5 4.9 116 3-123 18-142 (147)
11 3p1g_A Xenotropic murine leuke 99.8 9.9E-18 3.4E-22 110.1 13.8 112 2-119 36-157 (165)
12 2lsn_A Reverse transcriptase; 99.8 8.1E-18 2.8E-22 110.4 12.6 111 5-117 28-162 (165)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 1.5E-15 5E-20 116.0 9.7 103 2-116 449-555 (555)
14 2zd1_A Reverse transcriptase/r 99.6 1.3E-15 4.5E-20 116.3 7.4 102 2-115 452-557 (557)
15 1zbf_A Ribonuclease H-related 99.6 1.7E-14 5.9E-19 92.4 9.6 68 1-72 23-90 (142)
16 4htu_A Ribonuclease H, RNAse H 99.5 1.3E-13 4.3E-18 87.2 8.9 95 1-99 17-121 (134)
17 1uwz_A Cytidine deaminase; CDD 93.8 0.13 4.5E-06 32.1 5.0 58 3-61 22-79 (136)
18 2fr5_A Cytidine deaminase; tet 91.9 0.27 9.3E-06 31.1 4.5 57 4-61 35-91 (146)
19 2z3g_A Blasticidin-S deaminase 90.9 0.5 1.7E-05 29.1 4.9 57 2-61 24-80 (130)
20 1r5t_A Cytidine deaminase; zin 86.1 1.6 5.3E-05 27.4 4.8 86 4-103 31-119 (142)
21 2d30_A Cytidine deaminase; pur 85.1 1.5 5.3E-05 27.4 4.4 56 5-61 33-88 (141)
22 2a8n_A Cytidine and deoxycytid 83.6 0.69 2.4E-05 28.9 2.3 55 3-58 22-77 (144)
23 2b3j_A TRNA adenosine deaminas 83.5 0.93 3.2E-05 28.8 3.0 56 3-59 25-81 (159)
24 1wwr_A TRNA adenosine deaminas 83.4 0.91 3.1E-05 29.4 2.9 57 3-60 41-98 (171)
25 3b8f_A Putative blasticidin S 81.8 1.8 6.3E-05 27.0 3.8 58 2-61 21-78 (142)
26 2nx8_A TRNA-specific adenosine 81.5 1.2 4.2E-05 29.0 3.0 42 4-46 35-77 (179)
27 2w4l_A DCMP deaminse, deoxycyt 81.4 1.6 5.4E-05 28.4 3.5 39 5-43 32-90 (178)
28 3r2n_A Cytidine deaminase; str 78.9 2.5 8.5E-05 26.4 3.7 54 6-60 32-85 (138)
29 3dh1_A TRNA-specific adenosine 78.4 2.4 8.2E-05 27.8 3.6 41 6-47 47-88 (189)
30 1z3a_A TRNA-specific adenosine 78.4 1.4 4.6E-05 28.4 2.4 44 3-47 27-71 (168)
31 3mpz_A Cytidine deaminase; ssg 77.9 2.7 9.4E-05 26.6 3.7 54 6-60 47-100 (150)
32 2g84_A Cytidine and deoxycytid 77.8 6 0.00021 26.0 5.5 41 6-46 49-91 (197)
33 3dmo_A Cytidine deaminase; str 75.5 4.7 0.00016 25.1 4.2 55 6-61 33-89 (138)
34 1wkq_A Guanine deaminase; doma 71.0 3.3 0.00011 26.5 2.8 54 6-60 33-87 (164)
35 1p6o_A Cytosine deaminase; hyd 70.4 2.3 8E-05 27.1 2.0 43 3-45 32-76 (161)
36 3oj6_A Blasticidin-S deaminase 64.8 12 0.00043 23.7 4.5 52 6-60 52-103 (158)
37 3ugs_B Undecaprenyl pyrophosph 63.6 14 0.00049 24.9 4.8 49 10-61 12-60 (225)
38 2zd1_B P51 RT; P51/P66, hetero 63.2 25 0.00086 25.7 6.6 66 5-70 335-405 (428)
39 1ctt_A Cytidine deaminase; hyd 61.8 15 0.0005 25.8 4.8 58 4-61 208-266 (294)
40 3sbc_A Peroxiredoxin TSA1; alp 61.7 26 0.00088 23.3 5.9 42 8-51 145-186 (216)
41 3tue_A Tryparedoxin peroxidase 61.1 26 0.00089 23.4 5.8 43 7-51 148-190 (219)
42 1rw3_A POL polyprotein; RNA an 59.4 5.9 0.0002 29.2 2.6 65 6-71 357-428 (455)
43 2hvw_A Deoxycytidylate deamina 58.0 18 0.0006 23.5 4.4 53 5-60 61-129 (184)
44 4h8e_A Undecaprenyl pyrophosph 51.1 5 0.00017 27.7 1.0 50 10-62 30-79 (256)
45 3gg7_A Uncharacterized metallo 50.5 6 0.00021 27.0 1.3 21 44-64 180-200 (254)
46 3obf_A Putative transcriptiona 47.9 43 0.0015 20.8 5.1 24 2-25 119-142 (176)
47 3ewt_E Tumor necrosis factor r 47.2 18 0.00062 15.5 2.9 21 32-52 5-25 (25)
48 3r8n_K 30S ribosomal protein S 45.3 48 0.0016 19.8 4.7 49 10-59 21-74 (117)
49 3j20_M 30S ribosomal protein S 45.2 53 0.0018 20.3 6.4 49 10-59 29-83 (137)
50 1ysp_A Transcriptional regulat 45.0 55 0.0019 20.4 6.7 24 2-25 120-143 (181)
51 3msh_A Hepatitis B virus X-int 44.7 45 0.0015 19.4 6.2 54 4-64 16-74 (99)
52 2xzm_K RPS14E; ribosome, trans 42.4 62 0.0021 20.3 5.0 49 10-59 43-97 (151)
53 3bid_A UPF0339 protein NMB1088 42.1 39 0.0013 17.9 5.1 47 3-58 9-55 (64)
54 2hxv_A Diaminohydroxyphosphori 40.3 23 0.0008 25.3 3.1 36 5-44 36-71 (360)
55 2b3z_A Riboflavin biosynthesis 39.8 33 0.0011 24.7 3.8 36 5-44 36-71 (373)
56 1vq2_A DCMP deaminase, deoxycy 38.6 35 0.0012 22.1 3.6 22 5-27 22-43 (193)
57 1tf1_A Negative regulator of a 38.3 55 0.0019 20.9 4.5 23 2-24 140-162 (198)
58 2o99_A Acetate operon represso 38.1 57 0.002 20.4 4.5 24 2-25 124-147 (182)
59 3qb8_A A654L protein; GNAT N-a 37.7 67 0.0023 19.4 5.1 33 39-71 128-160 (197)
60 2g6v_A Riboflavin biosynthesis 36.4 29 0.001 25.3 3.2 35 5-43 52-86 (402)
61 3r4k_A Transcriptional regulat 35.7 77 0.0026 21.3 5.1 24 2-25 194-217 (260)
62 3tjj_A Peroxiredoxin-4; thiore 35.2 1E+02 0.0034 20.7 6.0 42 8-51 184-225 (254)
63 1xcc_A 1-Cys peroxiredoxin; un 35.1 93 0.0032 20.2 5.8 43 8-52 130-172 (220)
64 3mq0_A Transcriptional repress 35.1 67 0.0023 21.8 4.7 23 2-24 216-238 (275)
65 1mkm_A ICLR transcriptional re 35.0 81 0.0028 20.9 5.1 24 2-25 195-218 (249)
66 2vqe_K 30S ribosomal protein S 34.6 79 0.0027 19.2 5.9 49 10-59 31-84 (129)
67 3sgv_B Undecaprenyl pyrophosph 33.1 16 0.00056 25.1 1.3 49 10-61 23-71 (253)
68 3qpm_A Peroxiredoxin; oxidored 32.0 1.1E+02 0.0038 20.2 5.8 42 8-51 170-211 (240)
69 3a2v_A Probable peroxiredoxin; 31.8 1.2E+02 0.004 20.4 5.8 42 8-51 126-167 (249)
70 1prx_A HORF6; peroxiredoxin, h 31.8 1.1E+02 0.0037 20.0 6.0 42 8-51 133-174 (224)
71 1ctt_A Cytidine deaminase; hyd 31.8 50 0.0017 23.1 3.6 53 4-57 70-124 (294)
72 3ipw_A Hydrolase TATD family p 31.6 21 0.00072 25.3 1.7 22 43-64 230-251 (325)
73 3rcm_A TATD family hydrolase; 31.5 13 0.00044 25.8 0.6 20 45-64 194-213 (287)
74 2v2g_A Peroxiredoxin 6; oxidor 31.2 1.1E+02 0.0039 20.1 5.8 42 8-51 129-170 (233)
75 3e2v_A 3'-5'-exonuclease; stru 31.0 97 0.0033 22.7 5.2 21 43-63 286-306 (401)
76 1t57_A Conserved protein MTH16 31.0 77 0.0026 21.0 4.1 51 16-68 18-68 (206)
77 2vg0_A Short-chain Z-isoprenyl 29.6 23 0.0008 23.8 1.6 29 33-61 29-57 (227)
78 1f75_A Undecaprenyl pyrophosph 29.4 20 0.00068 24.5 1.2 29 33-61 46-74 (249)
79 4eg2_A Cytidine deaminase; UMP 28.3 1E+02 0.0035 21.6 4.7 83 5-101 213-297 (298)
80 3qas_B Undecaprenyl pyrophosph 28.1 20 0.00067 24.6 1.0 29 33-61 43-71 (253)
81 2g7u_A Transcriptional regulat 27.7 1.4E+02 0.0047 19.9 5.9 24 2-25 200-223 (257)
82 2d2r_A Undecaprenyl pyrophosph 27.6 20 0.00068 24.5 1.0 29 33-61 41-69 (245)
83 2vg3_A Undecaprenyl pyrophosph 27.1 21 0.0007 25.0 1.0 29 33-61 81-109 (284)
84 3bbn_K Ribosomal protein S11; 26.5 55 0.0019 20.3 2.7 49 10-59 44-97 (140)
85 2g3a_A Acetyltransferase; stru 26.3 98 0.0034 17.8 4.9 32 39-70 96-127 (152)
86 3fze_A Protein STE5; alpha/bet 25.8 12 0.00041 24.5 -0.4 40 77-116 36-75 (196)
87 3brc_A Conserved protein of un 25.5 1.3E+02 0.0044 18.9 5.4 23 2-25 106-128 (156)
88 4g84_A Histidine--tRNA ligase, 24.5 2E+02 0.007 20.8 8.7 63 6-69 109-179 (464)
89 2ia2_A Putative transcriptiona 24.3 83 0.0028 21.1 3.6 24 2-25 207-230 (265)
90 2d4p_A Hypothetical protein TT 24.0 61 0.0021 20.0 2.6 23 40-62 80-102 (141)
91 3mxt_A Pantothenate synthetase 23.7 1.9E+02 0.0065 20.2 6.2 68 10-100 177-244 (285)
92 3d3o_A Putative transcriptiona 23.5 49 0.0017 20.7 2.2 23 2-24 121-143 (178)
93 2xio_A Putative deoxyribonucle 22.9 43 0.0015 22.9 2.0 21 44-64 203-223 (301)
94 3grn_A MUTT related protein; s 22.9 93 0.0032 18.4 3.4 22 2-23 6-27 (153)
95 2o0y_A Transcriptional regulat 22.1 96 0.0033 20.8 3.6 23 2-24 203-225 (260)
96 1sn9_A BBAT, tetrameric beta-B 22.1 47 0.0016 13.8 1.2 11 106-116 8-18 (26)
97 1eoq_A GAG polyprotein capsid 22.1 36 0.0012 19.7 1.2 27 59-85 46-72 (96)
98 3guw_A Uncharacterized protein 21.6 28 0.00096 23.7 0.8 20 44-63 191-210 (261)
99 1j3w_A Giding PROTEIN-MGLB; gl 21.3 1.6E+02 0.0055 18.4 5.5 58 7-65 30-95 (163)
100 4g2e_A Peroxiredoxin; redox pr 21.0 1.5E+02 0.005 17.8 4.7 35 9-44 122-156 (157)
101 3ztl_A Thioredoxin peroxidase; 20.5 1.8E+02 0.0061 18.7 5.6 41 8-50 162-202 (222)
102 1t23_A Chromosomal protein MC1 20.2 57 0.002 18.6 1.7 19 9-27 6-24 (93)
103 2k7i_A UPF0339 protein ATU0232 20.2 1.3E+02 0.0044 16.8 4.8 48 4-60 32-79 (83)
104 4fd4_A Arylalkylamine N-acetyl 20.2 1.6E+02 0.0054 17.9 4.8 32 40-71 148-179 (217)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.95 E-value=7.1e-28 Score=154.45 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=104.2
Q ss_pred CcceEEEEEEeCCC-CCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCC-CcchHH
Q 044837 2 AVFAGLGCIIRNCE-GAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGIS-CRGELD 79 (125)
Q Consensus 2 ~g~~g~G~vird~~-g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~-~~~~~~ 79 (125)
||++|+|+|++++. |.++...+..++ ..|++.||+.|++.||+++.++|.++|+|+|||+.|++++++... ....+.
T Consensus 16 ~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~ 94 (141)
T 3hst_B 16 PGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLL 94 (141)
T ss_dssp SEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHH
T ss_pred CCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCHHHH
Confidence 78899999999987 677766665554 689999999999999999999999999999999999999998643 344577
Q ss_pred HHHHHHHHHhhCCCceEEEEecCCcchHHHHHHhhhhcCCC
Q 044837 80 LIICEIRVLIDQDNQYRVVYTSRSCKLVTHDLAKMALANSE 120 (125)
Q Consensus 80 ~~i~~i~~l~~~~~~~~~~~v~R~~N~~Ad~LAk~a~~~~~ 120 (125)
.++.+|+.+++.|..++|.||||+.|+.||.|||.|+....
T Consensus 95 ~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~~ 135 (141)
T 3hst_B 95 KLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAAA 135 (141)
T ss_dssp HHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999987543
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.95 E-value=3e-28 Score=155.74 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=104.6
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcc----cEEEEeCcHHHHHHHHcCCCC-cc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLS----PLVIESDSNSVTKFILKGISC-RG 76 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~----~v~~esDs~~vv~~l~~~~~~-~~ 76 (125)
||++|+|+++++++|.++...+..++ ..|++.||+.|+++||+++.+.+.+ +|+|+|||+.+++.+++.... ..
T Consensus 16 ~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~ 94 (140)
T 3u3g_D 16 PGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEP 94 (140)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCG
T ss_pred CCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCH
Confidence 78899999999999998877666554 5799999999999999999999999 999999999999999986643 44
Q ss_pred hHHHHHHHHHHH-hhCCCceEEEEecCCcchHHHHHHhhhhcCC
Q 044837 77 ELDLIICEIRVL-IDQDNQYRVVYTSRSCKLVTHDLAKMALANS 119 (125)
Q Consensus 77 ~~~~~i~~i~~l-~~~~~~~~~~~v~R~~N~~Ad~LAk~a~~~~ 119 (125)
.+..++.+++.+ ++.|..++|.||||+.|+.||.|||.|+...
T Consensus 95 ~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 138 (140)
T 3u3g_D 95 TLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAIDKA 138 (140)
T ss_dssp GGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHHhc
Confidence 678889999999 8999999999999999999999999998643
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.94 E-value=1.8e-26 Score=149.51 Aligned_cols=116 Identities=11% Similarity=0.043 Sum_probs=100.7
Q ss_pred CcceEE-EEEEeCCCCCEEEEecccCC---CCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCC-cc
Q 044837 2 AVFAGL-GCIIRNCEGAVMVTATSKKP---CLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISC-RG 76 (125)
Q Consensus 2 ~g~~g~-G~vird~~g~~i~~~~~~~~---~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~-~~ 76 (125)
||.+|+ |+|+++ +|..+........ ...|++.||+.|++.||+.+.++|.++|.|+|||+.|++++++.... ..
T Consensus 15 ~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~ 93 (149)
T 2ehg_A 15 PGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAK 93 (149)
T ss_dssp SSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCCCT
T ss_pred CChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccCCH
Confidence 688996 999999 8888765544333 37899999999999999999999999999999999999999986443 24
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEecCCcchHHHHHHhhhhcCC
Q 044837 77 ELDLIICEIRVLIDQDNQYRVVYTSRSCKLVTHDLAKMALANS 119 (125)
Q Consensus 77 ~~~~~i~~i~~l~~~~~~~~~~~v~R~~N~~Ad~LAk~a~~~~ 119 (125)
.+..++++++.+++.| .++|.||||+.|..||.||+.|....
T Consensus 94 ~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 94 RIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELV 135 (149)
T ss_dssp THHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhh
Confidence 6788999999999988 59999999999999999999998654
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.89 E-value=8.3e-22 Score=128.24 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=92.0
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCC--------C--
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGI--------S-- 73 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~--------~-- 73 (125)
.+|+|+++++..+..+. ..+.+..|++.||++|+++||+.+.+.+.++|.|+|||+.|++.|++.. .
T Consensus 25 ~aG~Gvv~~~~~~~~~~---~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~ 101 (154)
T 2qkb_A 25 RAGIGVYWGPGHPLNVG---IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTS 101 (154)
T ss_dssp EEEEEEECSTTCTTCEE---EECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCT
T ss_pred cEEEEEEEECCCceeEE---eecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhcccccc
Confidence 58999999986654332 2344468999999999999999999999999999999999999998621 1
Q ss_pred --CcchHHHHHHHHHHHhhCCCceEEEEecCC----cchHHHHHHhhhhcCC
Q 044837 74 --CRGELDLIICEIRVLIDQDNQYRVVYTSRS----CKLVTHDLAKMALANS 119 (125)
Q Consensus 74 --~~~~~~~~i~~i~~l~~~~~~~~~~~v~R~----~N~~Ad~LAk~a~~~~ 119 (125)
.+.....+++++..+++.+. +.|.|||+. .|..||.|||.|...+
T Consensus 102 ~~~~~~n~~l~~~i~~l~~~~~-v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 102 AGKEVINKEDFVALERLTQGMD-IQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp TSSBCTTHHHHHHHHHHHTTCE-EEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred CCCccccHHHHHHHHHHHcCCc-eEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 12344678999999988765 999999985 5999999999998764
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.85 E-value=2.4e-21 Score=124.93 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=89.6
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcC----------
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKG---------- 71 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~---------- 71 (125)
||++|+|+++++... ....+..++ ..|++.||+.|++.||+.+.+ ..+|.|+|||+.+++.|++.
T Consensus 17 ~g~~g~G~v~~~~~~--~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w 91 (146)
T 3h08_A 17 PGKGGWGALLMYGSS--RKEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGW 91 (146)
T ss_dssp TEEEEEEEEEEETTE--EEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTC
T ss_pred CCceEEEEEEEECCe--eEEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCC
Confidence 688999999998542 333333333 688999999999999999976 58999999999999999872
Q ss_pred ---CCCcchHHHHHHHHHHHhhCCCceEEEEec----CCcchHHHHHHhhhhcCC
Q 044837 72 ---ISCRGELDLIICEIRVLIDQDNQYRVVYTS----RSCKLVTHDLAKMALANS 119 (125)
Q Consensus 72 ---~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~----R~~N~~Ad~LAk~a~~~~ 119 (125)
...+.....+++++..+++.+ .+.|.||| |+.|..||.|||.|...+
T Consensus 92 ~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 92 KTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp C----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 111233466888888888866 59999999 999999999999998754
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.85 E-value=6.7e-21 Score=124.11 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=90.4
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc--------CCC
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK--------GIS 73 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~--------~~~ 73 (125)
|+++|+|+|+++..+..... ..+ +..|++.||+.|++.||+.+.+. .+|.|+|||+.+++.|++ ...
T Consensus 17 ~~~~G~G~v~~~~~~~~~~~--~~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~~w~~~W~~n~~~ 91 (155)
T 1jl1_A 17 PGPGGYGAILRYRGREKTFS--AGY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGITQWIHNWKKRGWK 91 (155)
T ss_dssp TEEEEEEEEEEETTEEEEEE--EEE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHHTTHHHHHHTTTB
T ss_pred CCceEEEEEEEECCeEEEEe--cCC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHHHHHHHHhhcccc
Confidence 67899999999865443332 223 35789999999999999999764 899999999999999997 111
Q ss_pred ----CcchHHHHHHHHHHHhhCCCceEEEEec----CCcchHHHHHHhhhhcCCCC
Q 044837 74 ----CRGELDLIICEIRVLIDQDNQYRVVYTS----RSCKLVTHDLAKMALANSES 121 (125)
Q Consensus 74 ----~~~~~~~~i~~i~~l~~~~~~~~~~~v~----R~~N~~Ad~LAk~a~~~~~~ 121 (125)
.+.....+++++..+++. ..+.|.||| |+.|..||.||+.|...+..
T Consensus 92 ~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 92 TADKKPVKNVDLWQRLDAALGQ-HQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp CTTSCBCTTHHHHHHHHHHTTT-CEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred cccCCccCCHHHHHHHHHHHcc-CceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 122235678888888875 489999999 88999999999999987653
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.83 E-value=2.7e-20 Score=121.58 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=88.2
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc--------CCC
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILK--------GIS 73 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~--------~~~ 73 (125)
|+++|+|+|+++.. . ....+..++ ..|++.||+.|++.||+.+.+. .+|.|+|||+.|++.|++ ...
T Consensus 19 ~g~~G~G~v~~~~~-~-~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~~w~~~W~~n~~~ 93 (158)
T 2e4l_A 19 PGPGGYGIVMNYKG-H-TKEMSDGFS-LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIMTWIHGWKKKGWM 93 (158)
T ss_dssp SEEEEEEEEEEETT-E-EEEEEEEEE-EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHHTHHHHHHHTTTB
T ss_pred CCcEEEEEEEEECC-E-EEEEecCcC-CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHHHHHHHHHHcccc
Confidence 68899999999843 2 222333333 5789999999999999998654 899999999999999987 221
Q ss_pred ----CcchHHHHHHHHHHHhhCCCceEEEEec----CCcchHHHHHHhhhhcC
Q 044837 74 ----CRGELDLIICEIRVLIDQDNQYRVVYTS----RSCKLVTHDLAKMALAN 118 (125)
Q Consensus 74 ----~~~~~~~~i~~i~~l~~~~~~~~~~~v~----R~~N~~Ad~LAk~a~~~ 118 (125)
.+.....+++++..+++. ..+.|.||| |..|..||.||+.|...
T Consensus 94 ~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 94 TSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp CTTSSBCTTHHHHHHHHHHHTT-SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred ccCCCcccCHHHHHHHHHHHcc-CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 122345678888888876 489999999 88999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.83 E-value=2.9e-20 Score=122.34 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=89.6
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcC---------C
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKG---------I 72 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~---------~ 72 (125)
|+.+|+|+|+++..+.... +... ...|++.||+.|++.||+.+.+. .+|.|+|||+.+++.|++. .
T Consensus 21 ~g~~G~G~v~~~~~~~~~~--~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w~~~W~~~~w 95 (166)
T 1ril_A 21 PGPGGWAALLRFHAHEKLL--SGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTEGWLEGWRKRGW 95 (166)
T ss_dssp TEEEEEEEEECBTTBCCEE--CCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHSSHHHHHHHTTS
T ss_pred CCCEEEEEEEEECCEEEEE--ecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhhhHHHHHHhccc
Confidence 6789999999986554332 2222 35789999999999999998765 4999999999999999881 1
Q ss_pred C----CcchHHHHHHHHHHHhhCCCceEEEEec----CCcchHHHHHHhhhhcCCC
Q 044837 73 S----CRGELDLIICEIRVLIDQDNQYRVVYTS----RSCKLVTHDLAKMALANSE 120 (125)
Q Consensus 73 ~----~~~~~~~~i~~i~~l~~~~~~~~~~~v~----R~~N~~Ad~LAk~a~~~~~ 120 (125)
. .......+++++..+++.+ .+.|.||+ |+.|..||.|||.|.....
T Consensus 96 ~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 96 RTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp BCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred ccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 1 1122346888888888865 89999999 8999999999999998765
No 9
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.82 E-value=1.5e-19 Score=117.12 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=86.0
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCC---------
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGI--------- 72 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~--------- 72 (125)
||++|+|+|+++..+..+ . + ...|++.||++|++.||+.+ + .+|.|+|||+.+++.+++..
T Consensus 25 ~g~~g~G~v~~~~~~~~~-~----~-~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~~~i~~w~~~W~~~gw~ 94 (150)
T 3qio_A 25 TKLGKAGYVTNRGRQKVV-T----L-TDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYALGIITQWIHNWKKRGWK 94 (150)
T ss_dssp TCCEEEEEEETTSCEEEE-E----E-SSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHHHHHHHHHHHHCC----
T ss_pred CCCeEEEEEEEcCCEEEE-e----C-CCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHHHHHHhhcCcC
Confidence 788999999998654332 1 2 36899999999999999985 3 89999999999999998731
Q ss_pred ---CCcchHHHHHHHHHHHhhCCCceEEEEecCCc----chHHHHHHhhhhcCC
Q 044837 73 ---SCRGELDLIICEIRVLIDQDNQYRVVYTSRSC----KLVTHDLAKMALANS 119 (125)
Q Consensus 73 ---~~~~~~~~~i~~i~~l~~~~~~~~~~~v~R~~----N~~Ad~LAk~a~~~~ 119 (125)
..+.....+++++..++.++..+.|.||+++. |..||.||+.|....
T Consensus 95 ~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 148 (150)
T 3qio_A 95 TADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKV 148 (150)
T ss_dssp --------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSCC
T ss_pred cCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHHh
Confidence 11123356778887777789999999999998 999999999998754
No 10
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.78 E-value=1e-19 Score=117.53 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=84.0
Q ss_pred cceEEEEEEeCCCCCEE-EEe-cccCCC--CCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcch-
Q 044837 3 VFAGLGCIIRNCEGAVM-VTA-TSKKPC--LGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGE- 77 (125)
Q Consensus 3 g~~g~G~vird~~g~~i-~~~-~~~~~~--~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~- 77 (125)
|++|+|+|+++ +|... ... ....+. ..|++.||++|++.||+++.+.+. +|.|+|||+.+.+++++.......
T Consensus 18 g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~~~~w~~~~~~ 95 (147)
T 2kq2_A 18 GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWATGEWKAKNEF 95 (147)
T ss_dssp TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHTTSSSSCCHHH
T ss_pred CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHhCCCccCCcc
Confidence 78999999998 55542 222 111121 368999999999999999999999 999999999998888775443332
Q ss_pred HHHHHHHHHHHhhCCCceEEEEec----CCcchHHHHHHhhhhcCCCCCC
Q 044837 78 LDLIICEIRVLIDQDNQYRVVYTS----RSCKLVTHDLAKMALANSESRG 123 (125)
Q Consensus 78 ~~~~i~~i~~l~~~~~~~~~~~v~----R~~N~~Ad~LAk~a~~~~~~~~ 123 (125)
...+.+.++.+.. .++|.||| +..|..||.|||.|.....+.+
T Consensus 96 ~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~~~ 142 (147)
T 2kq2_A 96 TQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDLEH 142 (147)
T ss_dssp HHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCTTC
T ss_pred hHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccccc
Confidence 1122222223322 78999999 5679999999999998877654
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.78 E-value=9.9e-18 Score=110.07 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=86.5
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCC-CCcchHHH
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGI-SCRGELDL 80 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~-~~~~~~~~ 80 (125)
||++|+|+++++ .|..+... ......|++.||++|++.||+++ ...+|.|.|||+.+++.+-... ..+.....
T Consensus 36 pG~~g~G~vi~~-~~~~~~~~--~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~d 109 (165)
T 3p1g_A 36 EGQRRAGAAVTT-ETEVIWAR--ALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVHSEGREIKNKN 109 (165)
T ss_dssp TTEEEEEEEEEC-SSCEEEEE--EECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSCCCSCCCSSHH
T ss_pred CCceEEEEEEEE-CCEEEEEe--cCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcccCCCcccCHH
Confidence 789999999988 45554332 23456899999999999999998 3689999999999999984211 11222345
Q ss_pred HHHHHHHHhhCCCceEEEEecCCc---------chHHHHHHhhhhcCC
Q 044837 81 IICEIRVLIDQDNQYRVVYTSRSC---------KLVTHDLAKMALANS 119 (125)
Q Consensus 81 ~i~~i~~l~~~~~~~~~~~v~R~~---------N~~Ad~LAk~a~~~~ 119 (125)
+++++...+..+..+.|.||++.. |..||.|||.|...+
T Consensus 110 l~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 110 EILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp HHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 667665555578899999999876 899999999998654
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.77 E-value=8.1e-18 Score=110.45 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=85.0
Q ss_pred eEEEEEEeCCC--CCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcC-----------
Q 044837 5 AGLGCIIRNCE--GAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKG----------- 71 (125)
Q Consensus 5 ~g~G~vird~~--g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~----------- 71 (125)
+|+|+++++.. .++....... .+..+.+.||+.||..+|+.+.+.+ .+|.|.|||++|++.++..
T Consensus 28 aG~Gv~~~~~~~~~~~~~~~~~~-tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~ 105 (165)
T 2lsn_A 28 AGMGIVHATYKPEYQVLNQWSIP-LGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSFYVAESANKELPYWKSNGFVN 105 (165)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEE-ESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCHHHHHHHHTHHHHHHHTTSCS
T ss_pred EEEEEEEEECCCccEEeccccCC-chHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChHHHHhhhhhhhhhheeccccc
Confidence 99999998533 3344333332 2467889999999999999988877 4799999999999999751
Q ss_pred -CCCcchHHHHHHHHHHHhhCCCceEEEEec----------CCcchHHHHHHhhhhc
Q 044837 72 -ISCRGELDLIICEIRVLIDQDNQYRVVYTS----------RSCKLVTHDLAKMALA 117 (125)
Q Consensus 72 -~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~----------R~~N~~Ad~LAk~a~~ 117 (125)
...+-....+++++..+++.+..++|.||+ ++.|..||.||+.+..
T Consensus 106 ~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 106 NKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 111223456788888888888899999998 4469999999999864
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.62 E-value=1.5e-15 Score=116.01 Aligned_cols=103 Identities=13% Similarity=0.026 Sum_probs=82.1
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcchHHHH
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGELDLI 81 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~~~ 81 (125)
||.+|+|+++++..+. .... ...|++.||+.|++.||+. +..+|.|.|||+.|++++++.... ....+
T Consensus 449 ~g~~g~G~v~~~~~~~-----~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~~~~--~~~~l 516 (555)
T 1mu2_A 449 SKEGKAGYVTDRGKDK-----VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTE--SESKI 516 (555)
T ss_dssp TCCEEEEEEETTSCEE-----EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCCSE--ESCHH
T ss_pred CCCceEEEEEEeCCEe-----eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhccccc--ccHHH
Confidence 6778999999885432 1112 3688999999999999988 779999999999999999984322 23456
Q ss_pred HHHHHHHhhCCCceEEEEecC----CcchHHHHHHhhhh
Q 044837 82 ICEIRVLIDQDNQYRVVYTSR----SCKLVTHDLAKMAL 116 (125)
Q Consensus 82 i~~i~~l~~~~~~~~~~~v~R----~~N~~Ad~LAk~a~ 116 (125)
++++..++..+..+.|.||++ .+|..||.||+.|+
T Consensus 517 ~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 517 VNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 667776766688899999998 56999999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.60 E-value=1.3e-15 Score=116.30 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=78.2
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcchHHHH
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGELDLI 81 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~~~ 81 (125)
||.+|+|+++++.....+ .. ...|++.||+.|++.||+.+ ..+|.|.|||+.|++++++..... ...+
T Consensus 452 ~g~~g~g~v~~~~~~~~~-----~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~~~~--~~~l 519 (557)
T 2zd1_A 452 TKLGKAGYVTNKGRQKVV-----PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQPDKS--ESEL 519 (557)
T ss_dssp TCCEEEEEEETTSCEEEE-----EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCCSEE--SSHH
T ss_pred CCceEEEEEEECCcEEEe-----cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCCccC--CHHH
Confidence 678999999985433222 12 36899999999999999998 689999999999999999854431 2345
Q ss_pred HHHHHHHhhCCCceEEEEecCC----cchHHHHHHhhh
Q 044837 82 ICEIRVLIDQDNQYRVVYTSRS----CKLVTHDLAKMA 115 (125)
Q Consensus 82 i~~i~~l~~~~~~~~~~~v~R~----~N~~Ad~LAk~a 115 (125)
++++...+.....+.|.||++. +|..||.||+.|
T Consensus 520 ~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 520 VNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 6666655555778999999995 599999999975
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.58 E-value=1.7e-14 Score=92.37 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=59.0
Q ss_pred CCcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCC
Q 044837 1 KAVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGI 72 (125)
Q Consensus 1 ~~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~ 72 (125)
.||++|+|+|++ .+|..+... ..+. ..|++.||++|++.||+.+.+.+. +|.|+|||+.|++++++..
T Consensus 23 NpG~~G~G~vl~-~~g~~~~~~-~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~ 90 (142)
T 1zbf_A 23 NPGIVEYKGVDT-KTGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKK 90 (142)
T ss_dssp SSEEEEEEEEET-TTCCEEEEC-CCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTC
T ss_pred CCCCeEEEEEEE-eCCEEEEEe-cccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCC
Confidence 378999999999 678877643 3343 589999999999999999999999 9999999999999999764
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.50 E-value=1.3e-13 Score=87.23 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=68.4
Q ss_pred CCcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCC-------
Q 044837 1 KAVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGIS------- 73 (125)
Q Consensus 1 ~~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~------- 73 (125)
.||++|+|+|+++ .|..+... ..++ ..|++.||++|++.||+.+.+.+.+ |.|+|||++|++.|++..-
T Consensus 17 NPGp~G~ggV~~~-~g~~~~~~-g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~~~kt~~~~~ 92 (134)
T 4htu_A 17 NPGIVEYKGVDTK-TGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDKKAKSTLVRN 92 (134)
T ss_dssp TTEEEEEEEEETT-TCCEEEEE-EEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHTCCCCCCCCS
T ss_pred CCCCeEEEEEEEE-CCEEEEEe-cCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcCCcccCCCCC
Confidence 4899999888888 67766544 3333 6899999999999999999998876 8999999999999986321
Q ss_pred -CcchHHHHHHHHHHHhhC--CCceEEEE
Q 044837 74 -CRGELDLIICEIRVLIDQ--DNQYRVVY 99 (125)
Q Consensus 74 -~~~~~~~~i~~i~~l~~~--~~~~~~~~ 99 (125)
....+-..++....++.. +..-.++|
T Consensus 93 vkN~dLw~~ld~~~~~l~~~~~~~~~~kw 121 (134)
T 4htu_A 93 EETALIWKLVDEAEEWLNTHTYETPILKW 121 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHCCCCCCEEEC
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 122344445555555553 44444444
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=93.80 E-value=0.13 Score=32.07 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=42.1
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
+...+|.++++.+|+++.+.............||..|+..+... -...+..+.+.+|.
T Consensus 22 s~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 22 SKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 45568999999999988655433222334578999999999876 44567888888773
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=91.89 E-value=0.27 Score=31.06 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=41.2
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
...+|.++++.+|+++.+...-.........||..|+..|... -...+..+.+.+|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 4468999998899988655432222233578999999999875 44567888888874
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=90.87 E-value=0.5 Score=29.15 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=40.9
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
|+...+|.++++.+|+++.+...- .......||..|+..+... -...+..+.+.+|.
T Consensus 24 ~s~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 24 SEDYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp CSSSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCCCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 344568999999899988655433 3444689999999988864 33467788888763
No 20
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=86.05 E-value=1.6 Score=27.35 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCc-chHHHHH
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCR-GELDLII 82 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~-~~~~~~i 82 (125)
...+|.++++.+|++..+...-.........||-.|+..+...-....+..+.+.+|... .. ++.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~~----------~~~~PC---- 96 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSED----------QCVSPC---- 96 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCSS----------SCCCCC----
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCCC----------cccCHH----
Confidence 346899999999998876543222233457899999998886432212778888876421 11 222
Q ss_pred HHHHHHhhCC--CceEEEEecCC
Q 044837 83 CEIRVLIDQD--NQYRVVYTSRS 103 (125)
Q Consensus 83 ~~i~~l~~~~--~~~~~~~v~R~ 103 (125)
-.|++++..| +++.+.....+
T Consensus 97 G~CRq~l~e~~~~~~~v~~~~~~ 119 (142)
T 1r5t_A 97 GVCRQFINEFVVKDFPIVMLNST 119 (142)
T ss_dssp HHHHHHHHTTSCTTCEEEEECSS
T ss_pred HHHHHHHHHhCCCCEEEEEECCC
Confidence 3466666665 35555544433
No 21
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=85.13 E-value=1.5 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=40.1
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
-.+|.++++.+|++..+...-.........||..|+..++.. -...+..|.+-+|.
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 358999999999887665532222334588999999988864 33457888888875
No 22
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=83.58 E-value=0.69 Score=28.90 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=33.8
Q ss_pred cceEEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHHHHhCcccEEEE
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLAAEVTLSPLVIE 58 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~~~~~~v~~e 58 (125)
+..-+|.||.+ +|+++..+..... .......||..|+..+.+......+....++
T Consensus 22 ~~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly 77 (144)
T 2a8n_A 22 DEVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLY 77 (144)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEE
T ss_pred CCCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEE
Confidence 34567888887 8888865543221 1233568999999988764332334444444
No 23
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=83.52 E-value=0.93 Score=28.84 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=35.0
Q ss_pred cceEEEEEEeCCCCCEEEEecccC-CCCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKK-PCLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~-~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
+..-+|+||.+ +|+++..+.... .......+||..||..+.+..-...+....+++
T Consensus 25 ~~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 25 GEVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CCCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 34567888887 788886554321 112335789999999887653333455555554
No 24
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=83.43 E-value=0.91 Score=29.35 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=36.7
Q ss_pred cceEEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
+..-+|+||.+ +|+++..+..... .......||..|+..+.+..-...+....+++.
T Consensus 41 ~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT 98 (171)
T 1wwr_A 41 GEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVT 98 (171)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEES
T ss_pred CCCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEEC
Confidence 34567888887 8888865443211 122356899999998876543345667777754
No 25
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=81.77 E-value=1.8 Score=27.00 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=38.5
Q ss_pred CcceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
|.. .+|.++++.+|+++.+...-.........||..|+..+...- ...+..+.+.+|.
T Consensus 21 PyS-~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G-~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 21 NDW-GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ-KKVTHSICLAREN 78 (142)
T ss_dssp SSC-EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT-CCEEEEEEEEESS
T ss_pred CCC-CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC-CCcEEEEEEEecC
Confidence 445 789999999999886554322223346889999999888642 2234666666653
No 26
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=81.48 E-value=1.2 Score=28.95 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=28.2
Q ss_pred ceEEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHH
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLML 46 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~ 46 (125)
..-+|+||.+ +|+++..+..... ......+||..||..+-+.
T Consensus 35 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~ 77 (179)
T 2nx8_A 35 EIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAH 77 (179)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHH
Confidence 4457888887 7888865543221 1223568999999988764
No 27
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=81.38 E-value=1.6 Score=28.40 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=27.0
Q ss_pred eEEEEEEeCCCCCEEEEecccCC-CC-----------CC--------hhHHHHHHHHHH
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKP-CL-----------GD--------VEITEVLAILGG 43 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~-~~-----------~~--------~~~AE~~Al~~a 43 (125)
.-+|+||.|.+|+++..+....+ ++ .+ ...||..||..+
T Consensus 32 ~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a 90 (178)
T 2w4l_A 32 SQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNK 90 (178)
T ss_dssp CCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC-
T ss_pred CCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHh
Confidence 45899999889999966554332 11 23 278999999876
No 28
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=78.92 E-value=2.5 Score=26.35 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=37.3
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
.+|.++++.+|++..+...-.........||-.|+..++..- +..+..|.+-+|
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~ 85 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDG 85 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcC
Confidence 578999999999886665332223346789999999887642 345666666655
No 29
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=78.35 E-value=2.4 Score=27.82 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=27.9
Q ss_pred EEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHH
Q 044837 6 GLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLA 47 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a 47 (125)
-+|+||.+ +|++|..+..... .......||..||..+.+.+
T Consensus 47 pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 47 PVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHH
Confidence 47888876 6888876654211 12345689999999987653
No 30
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=78.35 E-value=1.4 Score=28.40 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=28.5
Q ss_pred cceEEEEEEeCCCCCEEEEecccC-CCCCChhHHHHHHHHHHHHHH
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKK-PCLGDVEITEVLAILGGLMLA 47 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~-~~~~~~~~AE~~Al~~al~~a 47 (125)
+..-+|+||.+ +|+++..+.... .......+||..||..+.+..
T Consensus 27 ~~~pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~ 71 (168)
T 1z3a_A 27 REVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71 (168)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHHc
Confidence 34457888885 788886554321 112334789999999887643
No 31
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=77.89 E-value=2.7 Score=26.57 Aligned_cols=54 Identities=11% Similarity=-0.026 Sum_probs=38.4
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
.+|..++..+|++..+...-.........||-.|+..++.. -+..+..|.+-+|
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~ 100 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGP 100 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 57999999999988766543222334678999999988764 2345677777765
No 32
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=77.82 E-value=6 Score=25.99 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=29.2
Q ss_pred EEEEEEeCCC-CCEEEEecccCC-CCCChhHHHHHHHHHHHHH
Q 044837 6 GLGCIIRNCE-GAVMVTATSKKP-CLGDVEITEVLAILGGLML 46 (125)
Q Consensus 6 g~G~vird~~-g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~ 46 (125)
-+|+||.+.+ |++|..+..... ......+||..||..+-+.
T Consensus 49 PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 91 (197)
T 2g84_A 49 PFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAK 91 (197)
T ss_dssp SCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHH
Confidence 3589998866 999877654332 2344678999999987654
No 33
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=75.52 E-value=4.7 Score=25.10 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=39.2
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHh--CcccEEEEeCc
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEV--TLSPLVIESDS 61 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~--~~~~v~~esDs 61 (125)
.+|..++..+|++..+...-.........||-.|+..++..- .. .+..|.+-+|.
T Consensus 33 ~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G-~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAG-YRPGEFAAIAVVGET 89 (138)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCTTCEEEEEEEESC
T ss_pred CEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcC-CCcccEEEEEEEcCC
Confidence 579999999999887765433323445789999998887531 22 56788888775
No 34
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=71.04 E-value=3.3 Score=26.50 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=32.8
Q ss_pred EEEEEEeCCCCCEEEEecccCC-CCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 6 GLGCIIRNCEGAVMVTATSKKP-CLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
-+|+||.+ +|+++..+..... .......||..|+..+-+......+....+++-
T Consensus 33 pVGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 33 PFGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp SCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred CEEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 46777775 7888865543321 123357899999998876433333455555544
No 35
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=70.37 E-value=2.3 Score=27.05 Aligned_cols=43 Identities=12% Similarity=-0.046 Sum_probs=28.8
Q ss_pred cceEEEEEEe-CCCCCEEEEecccCC-CCCChhHHHHHHHHHHHH
Q 044837 3 VFAGLGCIIR-NCEGAVMVTATSKKP-CLGDVEITEVLAILGGLM 45 (125)
Q Consensus 3 g~~g~G~vir-d~~g~~i~~~~~~~~-~~~~~~~AE~~Al~~al~ 45 (125)
+..-+|+||. +.+|+++..+..... ......+||..|+..+.+
T Consensus 32 ~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 32 GGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp TSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 3445899999 578999865543221 122347899999988754
No 36
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=64.82 E-value=12 Score=23.73 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=35.3
Q ss_pred EEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 6 GLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 6 g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
.+|..+++.+|++..+... ........||-.|+..++.. -...+..+.+-++
T Consensus 52 ~VGAAll~~dG~i~tG~NV--En~~~~lCAEr~Ai~~Avs~-G~~~~~ai~vv~~ 103 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNV--YHFNGGPCAELVVLGVAAAA-GATKLTHIVAIAN 103 (158)
T ss_dssp CEEEEEEETTSCEEEEECC--CCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred cEEEEEEeCCCCEEEEEcc--ccCCccccHHHHHHHHHHHh-CCCceEEEEEEeC
Confidence 5899999999998876654 33445578999988887742 1224555555554
No 37
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=63.58 E-value=14 Score=24.89 Aligned_cols=49 Identities=10% Similarity=-0.093 Sum_probs=30.2
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
||-|.+|.+- ..+.++ ...-..+=+.++.+-++++.++|++.+.++.=|
T Consensus 12 iIMDGNrRwA--k~rgl~-r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFS 60 (225)
T 3ugs_B 12 VVMDGNRRWA--RAKGFL-AKLGYSQGVKTMQKLMEVCMEENISNLSLFAFS 60 (225)
T ss_dssp EEECCCC-----------------CHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EeccCcHHHH--HHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 5668888874 333344 345667788899999999999999999988644
No 38
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=63.21 E-value=25 Score=25.73 Aligned_cols=66 Identities=6% Similarity=-0.164 Sum_probs=43.7
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHH-HHHHHHHHHH-h-Cc--ccEEEEeCcHHHHHHHHc
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLA-ILGGLMLAAE-V-TL--SPLVIESDSNSVTKFILK 70 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~A-l~~al~~a~~-~-~~--~~v~~esDs~~vv~~l~~ 70 (125)
+.+|+|+....|....+..-.-.......+-|.+| +..+|+.-+. + |- ..+++.||.+.+.-..+.
T Consensus 335 g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~~~~~~ 405 (428)
T 2zd1_B 335 GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEY 405 (428)
T ss_dssp TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHHHHHhc
Confidence 46799988877665444333223355667888888 9999975433 2 43 556788999987655544
No 39
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=61.82 E-value=15 Score=25.84 Aligned_cols=58 Identities=7% Similarity=0.004 Sum_probs=41.3
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHH-HhCcccEEEEeCc
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAA-EVTLSPLVIESDS 61 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~-~~~~~~v~~esDs 61 (125)
...+|..+++.+|++..+...-.......+.||-.|+..+...-. ...+..+.+.+|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 346899999999988776654333345678899999998886421 2357788888875
No 40
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=61.68 E-value=26 Score=23.34 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=32.6
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
|.+|-|++|.+.......+ ....+..|++-++.|||+..+.|
T Consensus 145 ~tFiID~~G~Ir~~~v~~~--~~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 145 GLFIIDPKGVIRHITINDL--PVGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp EEEEECTTSBEEEEEEECT--TBCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCeEEEEEEcCC--CCCCCHHHHHHHHHHhhhHhhcC
Confidence 6888899998876554333 34568999999999999988765
No 41
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=61.07 E-value=26 Score=23.36 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 7 LGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 7 ~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
=|.+|-|++|.+.......+ ....+..|++-.+.|||++.+.|
T Consensus 148 R~tFiIDp~g~Ir~~~~~~~--~~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 148 RGLFIIDPHGMLRQITVNDM--PVGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp EEEEEECTTSBEEEEEEECT--TCCCCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEECCCCeEEEEEEecC--CCCCCHHHHHHHHHHhhhHHhcC
Confidence 37788899998876654433 34558899999999999987765
No 42
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=59.41 E-value=5.9 Score=29.19 Aligned_cols=65 Identities=15% Similarity=-0.031 Sum_probs=42.7
Q ss_pred EEEEEEeCC-C--CCEEEEecccCCC---CCChhHHHHHHHHHHHHHHHH-hCcccEEEEeCcHHHHHHHHcC
Q 044837 6 GLGCIIRNC-E--GAVMVTATSKKPC---LGDVEITEVLAILGGLMLAAE-VTLSPLVIESDSNSVTKFILKG 71 (125)
Q Consensus 6 g~G~vird~-~--g~~i~~~~~~~~~---~~~~~~AE~~Al~~al~~a~~-~~~~~v~~esDs~~vv~~l~~~ 71 (125)
|+|+|+... + +..+.-.++.+.. ..+..+.|++|+..|++.... +.-+++.+.||+. +...+++.
T Consensus 357 ~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 357 YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSST
T ss_pred cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCCC
Confidence 444555432 2 3455555554432 456678999999999987655 4457999999997 66656543
No 43
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=57.96 E-value=18 Score=23.52 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=32.6
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCC----------------CChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCL----------------GDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~----------------~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
.-+|+||.+ +|+++..+....... .....||..||..+.+. ...+....+++.
T Consensus 61 ~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~--g~~l~g~tlYvT 129 (184)
T 2hvw_A 61 AYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE--GISANNTEIYVT 129 (184)
T ss_dssp CCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH--TCCCTTEEEEEE
T ss_pred CCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc--CCCceeEEEEEC
Confidence 357888886 788886554332211 22578999999987653 123566666653
No 44
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=51.08 E-value=5 Score=27.67 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=36.5
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcH
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~ 62 (125)
||-|.+|.+ +..+.++ ...-..+=+.++..-++++.++|++.|.++.-|.
T Consensus 30 iIMDGN~Rw--Ak~rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFSt 79 (256)
T 4h8e_A 30 IIMDGNGRW--AKKRKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFST 79 (256)
T ss_dssp EECCCHHHH--HHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEET
T ss_pred EEcCCCHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEch
Confidence 344766665 3333333 3445677788899999999999999999999874
No 45
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=50.49 E-value=6 Score=27.02 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=17.4
Q ss_pred HHHHHHhCcccEEEEeCcHHH
Q 044837 44 LMLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 44 l~~a~~~~~~~v~~esDs~~v 64 (125)
.+.+......++.+|||+..+
T Consensus 180 ~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 180 AALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp HHHHHHSCGGGEEECCCTTTS
T ss_pred HHHHHHcCCCeEEEeCCCCcc
Confidence 456677899999999999864
No 46
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=47.89 E-value=43 Score=20.85 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=20.1
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|.+|.++.+.+..
T Consensus 119 ~g~~~iAaPI~~~~g~~~aalsv~ 142 (176)
T 3obf_A 119 IEEVGVASPVYDHRGNMVASVLIP 142 (176)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCcEEEEEEEECCCCCEEEEEEeE
Confidence 678899999999999988776543
No 47
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=47.16 E-value=18 Score=15.53 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHhCc.
Q 044837 32 VEITEVLAILGGLMLAAEVTL. 52 (125)
Q Consensus 32 ~~~AE~~Al~~al~~a~~~~~. 52 (125)
+..||.+.+...-++++..|+
T Consensus 5 p~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 5 TTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHhHHHHHHHHHHcCC.
Confidence 357999999999999988774
No 48
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=45.30 E-value=48 Score=19.85 Aligned_cols=49 Identities=16% Similarity=0.009 Sum_probs=33.0
Q ss_pred EEeCCCCCEEEEec-ccCC----CCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEGAVMVTAT-SKKP----CLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g~~i~~~~-~~~~----~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..|.++...+ +.+. .-.++.-|.. |...+.+.+.++|++.|.+..
T Consensus 21 tiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~-aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 21 TITDRQGNALGWATAGGSGFRGSRKSTPFAAQV-AAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp EEECTTSCCSEEEETGGGSCCGGGGSSHHHHHH-HHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEcCCCCEEEEEcCCccccCCCccCCHHHHHH-HHHHHHHHHHHhCCcEEEEEE
Confidence 46688888776544 2121 1456666654 456677888999999999887
No 49
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.20 E-value=53 Score=20.31 Aligned_cols=49 Identities=12% Similarity=-0.062 Sum_probs=32.8
Q ss_pred EEeCCCC-CEEEEecccCC-----CCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEG-AVMVTATSKKP-----CLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g-~~i~~~~~~~~-----~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..| +++...+.-.. .-.++.-|...| ..+.+.|.++|++.|.|.-
T Consensus 29 tiTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa-~~~~~~a~e~Gi~~v~V~v 83 (137)
T 3j20_M 29 HITDITGAETISRWSGGMVVKADRDEPSPYAAMLAA-RRAAEEALEKGIVGVHIRV 83 (137)
T ss_dssp EEEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHH-HHHHHHHHHHTEEEEEEEE
T ss_pred EEEcCCCCEEEEEEccceeeecCCccCCHHHHHHHH-HHHHHHHHHcCCeEEEEEE
Confidence 3568889 47765443322 235666666554 6677889999999998874
No 50
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=44.99 E-value=55 Score=20.44 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=20.4
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|..|.++.+.+..
T Consensus 120 ~g~~~vAaPv~~~~g~~~~alsv~ 143 (181)
T 1ysp_A 120 EGLRCIAVPVFDRFGVVIAGLSIS 143 (181)
T ss_dssp TTBEEEEEEEECTTSCEEEEEEEC
T ss_pred cCCEEEEEEEECCCCCEEEEEEEE
Confidence 678899999999999998876643
No 51
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=44.72 E-value=45 Score=19.42 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=33.4
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC-----cccEEEEeCcHHH
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT-----LSPLVIESDSNSV 64 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~-----~~~v~~esDs~~v 64 (125)
++-.|+++-|..|-.+.+.- . .+...|=+...+ .+.|..+- ...|.+|+|+..+
T Consensus 16 pgvvGvlc~D~qGLcLg~~G-~----~s~~~AG~i~~l--a~~AakL~p~~~~~P~I~LEsDs~~~ 74 (99)
T 3msh_A 16 PSIVGVLCTDSQGLNLGCRG-T----LSDEHAGVISVL--AQQAAKLTSDPTDIPVVCLESDNGNI 74 (99)
T ss_dssp TTEEEEEEECTTCCEEEEEE-T----CCGGGHHHHHHH--HHHHHHTCCCSSCCCCEEEEETTEEE
T ss_pred CCcEEEEEECCCCCcccccC-C----CCcccchHHHHH--HHHHHhcCCCCCCCCEEEEEeCCceE
Confidence 45679999999998876542 2 233333332222 24565553 4589999998743
No 52
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=42.43 E-value=62 Score=20.35 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=31.7
Q ss_pred EEeCCCCC-EEEEecccCCC-----CCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEGA-VMVTATSKKPC-----LGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g~-~i~~~~~~~~~-----~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..|. ++...+..+.. -.|+.-|. +|...+.+.|.++|++.|.+.-
T Consensus 43 tiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq-~aa~~~a~~a~e~Gi~~v~V~v 97 (151)
T 2xzm_K 43 HVTDLSGRETLVRVTGGMKVKADREESSPYAAM-QAAIDVVNRCKELKINALHIKL 97 (151)
T ss_dssp EEECTTCCSEEEECCHHHHCSSGGGGSCHHHHH-HHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEECCCCCEEEEEecCcceEeCCCCcCCHHHHH-HHHHHHHHHHHHcCCeEEEEEE
Confidence 35688886 55544432221 35566664 4556677888999999998875
No 53
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=42.15 E-value=39 Score=17.92 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=28.3
Q ss_pred cceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEE
Q 044837 3 VFAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIE 58 (125)
Q Consensus 3 g~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~e 58 (125)
..+-+-|.+...+|++|+..-. ..+. .++..||+..+...-..-+++
T Consensus 9 ~~G~frfrLka~NGevI~sSe~----Y~sk-----~~a~~gI~sVk~na~~a~v~d 55 (64)
T 3bid_A 9 AKGEYRWRLKAANHEIIAQGEG----YTSK-----QNCQHAVDLLKSTTAATPVKE 55 (64)
T ss_dssp TTSCEEEEEECTTSCEEEECCC----BSCH-----HHHHHHHHHHHTCCTTSCEEE
T ss_pred CCCCEEEEEEeCCCCEEEECCC----cCCH-----HHHHHHHHHHHHhCCCCceee
Confidence 3456889999999999984332 2332 234456666665544444443
No 54
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=40.30 E-value=23 Score=25.34 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=26.1
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHH
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGL 44 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al 44 (125)
.-+|+||.+ +|+++..+.... ....+||..|+..+-
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a~ 71 (360)
T 2hxv_A 36 PPVGAVVVK-DGRIIAEGFHPY---FGGPHAERMAIESAR 71 (360)
T ss_dssp CCCEEEEEE-TTEEEEEEECCS---TTSCCHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHHH
Confidence 357888876 788887665432 335699999999883
No 55
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=39.76 E-value=33 Score=24.71 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=26.3
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHH
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGL 44 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al 44 (125)
.-+|+||.+ +|+++..+.... ....+||..|+..+-
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a~ 71 (373)
T 2b3z_A 36 PLVGAVVVK-DGQIVGMGAHLK---YGEAHAEVHAIHMAG 71 (373)
T ss_dssp CCCEEEEES-SSSEEEEEECCS---TTSCCHHHHHHHHHG
T ss_pred CcEEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHhh
Confidence 357888886 789887765443 335799999998764
No 56
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=38.64 E-value=35 Score=22.05 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=14.7
Q ss_pred eEEEEEEeCCCCCEEEEecccCC
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKP 27 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~ 27 (125)
.-+|+||. .+|+++..+....+
T Consensus 22 ~~VGAVIV-~dg~Iia~G~N~~~ 43 (193)
T 1vq2_A 22 WKVGAVIE-KNGRIISTGYNGSP 43 (193)
T ss_dssp BCCEEEEE-ETTEEEEEEECBCC
T ss_pred CCEEEEEE-ECCEEEEEEeCCCC
Confidence 34677777 47999977665443
No 57
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=38.27 E-value=55 Score=20.88 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.4
Q ss_pred CcceEEEEEEeCCCCCEEEEecc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATS 24 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~ 24 (125)
||..++++-|+|..|.++.+.+.
T Consensus 140 ~gv~~iAaPI~~~~g~~~aalsv 162 (198)
T 1tf1_A 140 VGLNCIASAIYDDVGSVVAAISI 162 (198)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEE
T ss_pred cCceEEEEEEECCCCCEEEEEEE
Confidence 67889999999999998876554
No 58
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=38.06 E-value=57 Score=20.39 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=19.9
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|..|.++.+.+..
T Consensus 124 ~gv~~iAaPv~~~~g~~~aalsv~ 147 (182)
T 2o99_A 124 LGLRCLAACIFDEHREPFAAISIS 147 (182)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCEEEEEEEECCCCCEEEEEEEE
Confidence 678899999999999988766543
No 59
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=37.66 E-value=67 Score=19.38 Aligned_cols=33 Identities=3% Similarity=-0.085 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcC
Q 044837 39 AILGGLMLAAEVTLSPLVIESDSNSVTKFILKG 71 (125)
Q Consensus 39 Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~ 71 (125)
.+..++++|.+.|+..+.+++++........+.
T Consensus 128 Ll~~~~~~a~~~g~~~i~l~~~n~~a~~~y~k~ 160 (197)
T 3qb8_A 128 LLKKTIEESSSHGFKYIYGDCTNIISQNMFEKH 160 (197)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHC
Confidence 456678889999999999999888888877663
No 60
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=36.39 E-value=29 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=25.8
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHH
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGG 43 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~a 43 (125)
.-+|+||.+ +|+++..+.... ....+||..|+..+
T Consensus 52 ~~vGaviv~-~g~ii~~g~n~~---~g~~HAE~~Ai~~a 86 (402)
T 2g6v_A 52 PNVGCVIVK-DGEIVGEGYHQR---AGEPHAEVHALRMA 86 (402)
T ss_dssp CCCEEEEEE-TTEEEEEEECCC---TTSCCHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCC---CCccHHHHHHHHHh
Confidence 357888887 788887765443 33579999999876
No 61
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=35.66 E-value=77 Score=21.27 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.2
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|.+|.++.+.+..
T Consensus 194 ~g~~~iAaPI~~~~g~~~aalsvs 217 (260)
T 3r4k_A 194 AEVHSHAVPIFGPDRAVLGALAVA 217 (260)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCceEEEEEEECCCCCEEEEEEEE
Confidence 678899999999999998776643
No 62
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=35.16 E-value=1e+02 Score=20.67 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=31.3
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.++........ ......|++.++.+|+...+.+
T Consensus 184 ~tflID~~G~I~~~~~~~~~--~~~~~~eil~~L~alq~~~~~~ 225 (254)
T 3tjj_A 184 GLFIIDDKGILRQITLNDLP--VGRSVDETLRLVQAFQYTDKHG 225 (254)
T ss_dssp EEEEECTTSBEEEEEEECTT--CCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEecCCC--CCCCHHHHHHHHHhhccccccC
Confidence 57888999999877654332 3446789999999999887654
No 63
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=35.10 E-value=93 Score=20.23 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=31.9
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCc
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTL 52 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~ 52 (125)
+.+|-|.+|.+......... ...+..|++..+.+|+...+.+.
T Consensus 130 ~~flID~~G~I~~~~~~~~~--~g~~~~ell~~i~~lq~~~~~~~ 172 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPAT--TGRNAHEILRVLKSLQLTYTTPV 172 (220)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHSSE
T ss_pred eEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhhcCCc
Confidence 67888999998877654332 22367899999999998876643
No 64
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=35.10 E-value=67 Score=21.82 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.6
Q ss_pred CcceEEEEEEeCCCCCEEEEecc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATS 24 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~ 24 (125)
||..++++-|+|.+|.++.+.+.
T Consensus 216 ~gv~~vAaPV~~~~g~~~aalsv 238 (275)
T 3mq0_A 216 EGMLCIGAAIRDYSGAASAGIAI 238 (275)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEE
T ss_pred cCcEEEEEEEECCCCCEEEEEEE
Confidence 67889999999999998876654
No 65
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=34.97 E-value=81 Score=20.91 Aligned_cols=24 Identities=13% Similarity=0.082 Sum_probs=20.0
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|..|.++.+.+..
T Consensus 195 ~g~~~iAaPI~~~~g~~~aalsv~ 218 (249)
T 1mkm_A 195 IGIMCVGVPIFDHNGYPVAGVSIS 218 (249)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCEEEEEEEECCCCCEEEEEEEE
Confidence 678899999999999988776543
No 66
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=34.55 E-value=79 Score=19.25 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=31.9
Q ss_pred EEeCCCCCEEEEecccCCC-----CCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEGAVMVTATSKKPC-----LGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~-----~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..|.++...+.-..+ -.++.-|. +|...+.+.+.++|++.|.+..
T Consensus 31 tiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~-~aa~~~~~~~~~~Gi~~v~V~v 84 (129)
T 2vqe_K 31 TITDPDGNPITWSSGGVIGYKGSRKGTPYAAQ-LAALDAAKKAMAYGMQSVDVIV 84 (129)
T ss_dssp EEECTTSCEEEECCTTTTTCCSGGGGSHHHHH-HHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEeccceeEcCCCcCCHHHHH-HHHHHHHHHHHHhCCeEEEEEE
Confidence 4678899988766532211 23444444 3445667778899999999886
No 67
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=33.08 E-value=16 Score=25.07 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=34.9
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
||-|.+|.+ +..+.++ ...-..+=+.++..-++++.++|++.|.++.=|
T Consensus 23 iIMDGNrRw--Ak~rgl~-r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 23 IIMDGNGRW--AKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp EEECCHHHH--HHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred EEecCcHHH--HHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 444777766 3333333 344566778889999999999999999999543
No 68
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=32.02 E-value=1.1e+02 Score=20.16 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=30.8
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
..+|-|.+|.++........ ......|++..+.+|+...+.|
T Consensus 170 ~~flID~~G~I~~~~~~~~~--~~~~~~eil~~l~~lq~~~~~~ 211 (240)
T 3qpm_A 170 GLFIIDEKGVLRQITMNDLP--VGRSVDETLRLVQAFQYTDKHG 211 (240)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCCCeEEEEEecCCC--CCCCHHHHHHHHHHhhhhhhcC
Confidence 57788999999877554322 3345789999999999876654
No 69
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=31.80 E-value=1.2e+02 Score=20.41 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=30.8
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.++........ ...+..|++..+.+|+...+.+
T Consensus 126 ~~fIID~dG~I~~~~~~~~~--~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPME--LGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEEEecCCc--ccchhHHHHHHHHHHHhccccC
Confidence 57888999998877654332 2236789999999999876553
No 70
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=31.80 E-value=1.1e+02 Score=19.97 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=30.8
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.+......... ...+..|++..+.+|+...+.+
T Consensus 133 ~~fiID~~G~I~~~~~~~~~--~gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 133 VVFVFGPDKKLKLSILYPAT--TGRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp EEEEECTTSBEEEEEECCTT--BCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhccCC
Confidence 67888999999887654332 2235789999999999876654
No 71
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=31.78 E-value=50 Score=23.12 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=34.1
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCC--CCChhHHHHHHHHHHHHHHHHhCcccEEE
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPC--LGDVEITEVLAILGGLMLAAEVTLSPLVI 57 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~--~~~~~~AE~~Al~~al~~a~~~~~~~v~~ 57 (125)
.-.+|.+++..+|++..+...-... ..-...||-.|+..+... -+..+..|.+
T Consensus 70 ~f~VGAall~~dG~i~~G~NvEnas~~~~~t~CAEr~Ai~~A~~~-G~~~~~~iav 124 (294)
T 1ctt_A 70 NFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLS-GEKALAAITV 124 (294)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHHT-TCCCEEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEcCCccCccCCCccCHHHHHHHHHHHc-CCCcEEEEEE
Confidence 3457999999999988766532211 113578999999888764 2223455554
No 72
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=31.58 E-value=21 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.8
Q ss_pred HHHHHHHhCcccEEEEeCcHHH
Q 044837 43 GLMLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 43 al~~a~~~~~~~v~~esDs~~v 64 (125)
.++.+......++.+||||..+
T Consensus 230 ~~~~v~~iPldrlLlETDaP~l 251 (325)
T 3ipw_A 230 LLNVMKQIPIERLHIETDCPYC 251 (325)
T ss_dssp HHHHHTTSCGGGEEECCCTTSC
T ss_pred HHHHHHhCCcccEEEeCCCccc
Confidence 3567788899999999999876
No 73
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=31.48 E-value=13 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.7
Q ss_pred HHHHHhCcccEEEEeCcHHH
Q 044837 45 MLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 45 ~~a~~~~~~~v~~esDs~~v 64 (125)
+.+...+..++.+|||+..+
T Consensus 194 ~~v~~ip~drlLlETD~P~l 213 (287)
T 3rcm_A 194 PLVGNIPEGRLMLESDAPYL 213 (287)
T ss_dssp HHHTTSCTTSEEECCCTTSC
T ss_pred HHHHhcCCccEEEeccCCcc
Confidence 44556689999999999754
No 74
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=31.18 E-value=1.1e+02 Score=20.11 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=30.5
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhC
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVT 51 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~ 51 (125)
+.+|-|.+|.+......... ...+..|++..+.+|+...+.+
T Consensus 129 ~~fiID~~G~I~~~~~~~~~--~gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 129 AVFIIGPDKKLKLSILYPAT--TGRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHHHHhhccCC
Confidence 67788999998877654332 2235789999999999876543
No 75
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=30.99 E-value=97 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=17.9
Q ss_pred HHHHHHHhCcccEEEEeCcHH
Q 044837 43 GLMLAAEVTLSPLVIESDSNS 63 (125)
Q Consensus 43 al~~a~~~~~~~v~~esDs~~ 63 (125)
.++.+......++.+|||+..
T Consensus 286 ~~e~v~~iPldrLLlETDaP~ 306 (401)
T 3e2v_A 286 NLAVVKQIPTERLLLETDAPW 306 (401)
T ss_dssp HHHHHHTSCGGGEEECCCTTS
T ss_pred HHHHHHhCCchhEEEecCCCC
Confidence 357788889999999999993
No 76
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=30.99 E-value=77 Score=21.01 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=31.4
Q ss_pred CCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHH
Q 044837 16 GAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFI 68 (125)
Q Consensus 16 g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l 68 (125)
|..+.....++......|.-+ .+..+++.|.++|+++|++-|-+-.-...+
T Consensus 18 ~~~~~k~i~YF~~~G~eNT~~--tl~la~era~e~~Ik~iVVASssG~TA~k~ 68 (206)
T 1t57_A 18 GSHMEKKICYFEEPGKENTER--VLELVGERADQLGIRNFVVASVSGETALRL 68 (206)
T ss_dssp ---CEEEEEEESSCSGGGHHH--HHHHHHHHHHHHTCCEEEEECSSSHHHHHH
T ss_pred CccceeeEEEecCCCcccHHH--HHHHHHHHHHHcCCCEEEEEeCCCHHHHHH
Confidence 333333333444445555554 456689999999999999999865544433
No 77
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=29.62 E-value=23 Score=23.78 Aligned_cols=29 Identities=14% Similarity=-0.107 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 33 EITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 33 ~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
..+=+.++.+-++++.++|++.|.++.=|
T Consensus 29 H~~G~~~l~~i~~~c~~~GI~~lTlYaFS 57 (227)
T 2vg0_A 29 YRMGAAKIAEMLRWCHEAGIELATVYLLS 57 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 44667889999999999999999999854
No 78
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=29.39 E-value=20 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 33 EITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 33 ~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
..+=+.++.+-++++.++|++.|.++.=|
T Consensus 46 H~~G~~~l~~iv~~c~~~GI~~lTlYaFS 74 (249)
T 1f75_A 46 HYEGMQTVRKITRYASDLGVKYLTLYAFS 74 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 45557789999999999999999999855
No 79
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=28.33 E-value=1e+02 Score=21.62 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=51.8
Q ss_pred eEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHH-HhCcccEEEEeCcHHHHHHHHcCCCCcchHHHHHH
Q 044837 5 AGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAA-EVTLSPLVIESDSNSVTKFILKGISCRGELDLIIC 83 (125)
Q Consensus 5 ~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~-~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~~~i~ 83 (125)
...|..+++.+|++..+...-.......+.||-.|+..++.--. ...+..+.+-.|.. ...++. .
T Consensus 213 ~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~~----------~~~sPC----G 278 (298)
T 4eg2_A 213 NFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESAT----------GKISHL----A 278 (298)
T ss_dssp CCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTT----------CSSCCH----H
T ss_pred CCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCCC----------CCcCCc----H
Confidence 36799999999998776543222234467899999888875322 12467777766632 122333 3
Q ss_pred HHHHHhhCC-CceEEEEec
Q 044837 84 EIRVLIDQD-NQYRVVYTS 101 (125)
Q Consensus 84 ~i~~l~~~~-~~~~~~~v~ 101 (125)
-|+.++..| +++.+.|+.
T Consensus 279 ~CRqvL~e~~pdv~l~y~~ 297 (298)
T 4eg2_A 279 DTQATLEVINPDIPLSYLS 297 (298)
T ss_dssp HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhCCCCceEEEe
Confidence 466666654 588888763
No 80
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=28.12 E-value=20 Score=24.63 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 33 EITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 33 ~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
..+=+.++.+-++++.++|++.|.++.=|
T Consensus 43 H~~G~~~l~~iv~~c~~~GI~~lTlYaFS 71 (253)
T 3qas_B 43 HKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEec
Confidence 45567889999999999999999999854
No 81
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=27.68 E-value=1.4e+02 Score=19.89 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.2
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|..|.++.+.+..
T Consensus 200 ~g~~~iAaPI~~~~g~~~aalsvs 223 (257)
T 2g7u_A 200 KGLISLAAPVHDAGGTVVGVVACS 223 (257)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCEEEEEEEECCCCCEEEEEEEE
Confidence 678899999999999998876643
No 82
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=27.57 E-value=20 Score=24.46 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 33 EITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 33 ~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
..+=+.++.+-++++.++|++.|.++.=|
T Consensus 41 H~~G~~~l~~iv~~c~~~GI~~lTlYaFS 69 (245)
T 2d2r_A 41 HKKGVKTLKDITIWCANHKLECLTLYAFS 69 (245)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 44557789999999999999999999854
No 83
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=27.07 E-value=21 Score=25.00 Aligned_cols=29 Identities=14% Similarity=-0.059 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHhCcccEEEEeCc
Q 044837 33 EITEVLAILGGLMLAAEVTLSPLVIESDS 61 (125)
Q Consensus 33 ~~AE~~Al~~al~~a~~~~~~~v~~esDs 61 (125)
..+=+.++.+-++++.++|++.|.++.=|
T Consensus 81 H~~G~~~l~~iv~~c~~lGI~~LTlYaFS 109 (284)
T 2vg3_A 81 HKMGEAVVIDIACGAIELGIKWLSLYAFS 109 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 34566789999999999999999999844
No 84
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=26.47 E-value=55 Score=20.31 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=30.6
Q ss_pred EEeCCCCCEEEEeccc-CC----CCCChhHHHHHHHHHHHHHHHHhCcccEEEEe
Q 044837 10 IIRNCEGAVMVTATSK-KP----CLGDVEITEVLAILGGLMLAAEVTLSPLVIES 59 (125)
Q Consensus 10 vird~~g~~i~~~~~~-~~----~~~~~~~AE~~Al~~al~~a~~~~~~~v~~es 59 (125)
-+.|..|.++...+.- +. .-.++.-|. +|...+.+.+.++|++.|.+..
T Consensus 44 tiTD~~G~~i~~~SaG~~GfKg~rksTp~AA~-~aa~~~~~~a~e~Gi~~v~V~v 97 (140)
T 3bbn_K 44 TVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQ-TAAGNAIRTVVEQGMQRAEVMI 97 (140)
T ss_dssp EEECSSSCEEEEEETTTSSCCTTSCSSHHHHH-HHHTSGGGTSTTTCCCEEEEEE
T ss_pred EEEcCCCCEEEEEeccceeEcccccCCHHHHH-HHHHHHHHHHHHhCCeEEEEEE
Confidence 4678899988765532 21 134444443 3334456677888999998876
No 85
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=26.30 E-value=98 Score=17.78 Aligned_cols=32 Identities=6% Similarity=-0.131 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCcccEEEEeCcHHHHHHHHc
Q 044837 39 AILGGLMLAAEVTLSPLVIESDSNSVTKFILK 70 (125)
Q Consensus 39 Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~ 70 (125)
.+...++.+.+.|...+.+++++........+
T Consensus 96 ll~~~~~~~~~~g~~~i~l~~~n~~a~~~y~k 127 (152)
T 2g3a_A 96 LLAMAEEEARKRGCMGAYIDTMNPDALRTYER 127 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccHHHHHHH
Confidence 34556788889999999999986555555544
No 86
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=25.78 E-value=12 Score=24.53 Aligned_cols=40 Identities=8% Similarity=0.117 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEecCCcchHHHHHHhhhh
Q 044837 77 ELDLIICEIRVLIDQDNQYRVVYTSRSCKLVTHDLAKMAL 116 (125)
Q Consensus 77 ~~~~~i~~i~~l~~~~~~~~~~~v~R~~N~~Ad~LAk~a~ 116 (125)
..-.+..-++.|.-+|+.+++..|.++++-++..+++...
T Consensus 36 ~~~~i~NslkAL~~Kf~~~k~C~VD~~g~V~~~~~~~~~i 75 (196)
T 3fze_A 36 SLIVVYNSLKALTIKFARLQFCFVDRNNYVLDYGSVLHKI 75 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEETTSBEEEEEEHHHHC
T ss_pred cEEeehHHHHHHHhccCcceEEEEeCCCCEEEeehHHhhh
Confidence 3446778889999999999999999999876665555544
No 87
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.53 E-value=1.3e+02 Score=18.87 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=16.2
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||.+ -=-|+-|..|+++.+...+
T Consensus 106 PGSG-SmLvimD~kGRiLtas~SP 128 (156)
T 3brc_A 106 PGSG-SLLVIMDSRGRLLSAAMSP 128 (156)
T ss_dssp TTSC-EEEEEEETTSCEEEEEEEC
T ss_pred CCCc-cEEEEEcCCCcEEeeccCc
Confidence 4443 3356779999999887654
No 88
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=24.48 E-value=2e+02 Score=20.79 Aligned_cols=63 Identities=5% Similarity=0.003 Sum_probs=41.4
Q ss_pred EEEEEEeCCC---C-----CEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHH
Q 044837 6 GLGCIIRNCE---G-----AVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFIL 69 (125)
Q Consensus 6 g~G~vird~~---g-----~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~ 69 (125)
=+|-++|+.. | ++.-.....++ ..++..+|+..+..+.+....+|+..+.++-.+..+++.+-
T Consensus 109 y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G-~~~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~~~~~~~ 179 (464)
T 4g84_A 109 HIAKVYRRDNPAMTRGRYREFYQCDFDIAG-NFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMF 179 (464)
T ss_dssp EEEEEECCCC------CCSEEEEEEEEEES-CCSTTHHHHHHHHHHHHHHHHHTCCCEEEEEEEHHHHHHHH
T ss_pred EEecceeccCCccccCccceeeecceeccC-CccchhhHHHHHHHHHHHHHHhCCCCcceeecchhhHHHHH
Confidence 4688888754 1 22222323222 34556666667777888889999999999988877776654
No 89
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=24.26 E-value=83 Score=21.15 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.1
Q ss_pred CcceEEEEEEeCCCCCEEEEeccc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATSK 25 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~~ 25 (125)
||..++++-|+|..|.++.+.+..
T Consensus 207 ~g~~~iAaPI~~~~g~~~aalsvs 230 (265)
T 2ia2_A 207 AGLRSMAAPIRGASGLTVAAVNIS 230 (265)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCEEEEEEEECCCCCEEEEEEEE
Confidence 678899999999999988776643
No 90
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=24.01 E-value=61 Score=20.04 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCcccEEEEeCcH
Q 044837 40 ILGGLMLAAEVTLSPLVIESDSN 62 (125)
Q Consensus 40 l~~al~~a~~~~~~~v~~esDs~ 62 (125)
+..++++|.+.|+.+|.+.+|..
T Consensus 80 l~~a~~~a~~~G~~rv~L~~~~~ 102 (141)
T 2d4p_A 80 LRAVVKSAYDAGVYEVALHLDPE 102 (141)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHHCCCCEEEEEeccc
Confidence 34567899999999999977665
No 91
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=23.68 E-value=1.9e+02 Score=20.16 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=40.2
Q ss_pred EEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeCcHHHHHHHHcCCCCcchHHHHHHHHHHHh
Q 044837 10 IIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESDSNSVTKFILKGISCRGELDLIICEIRVLI 89 (125)
Q Consensus 10 vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esDs~~vv~~l~~~~~~~~~~~~~i~~i~~l~ 89 (125)
++|+.+|--+ +.+....+...-.++.+|..+|+.+.+. +.... .....++..++..+
T Consensus 177 tvRe~DGLA~---SSRN~yLs~~eR~~A~~L~~aL~~~~~~-----------------~~~G~---~~~~~l~~~~~~~l 233 (285)
T 3mxt_A 177 IIREEDGLAK---SSRNVYLSKEERKASLAISQSIFLAEKL-----------------VREGE---KNTSKIIQAMKDIL 233 (285)
T ss_dssp CCBCTTSCBC---CGGGGGCCHHHHHHHHHHHHHHHHHHHH-----------------HHTTC---CBHHHHHHHHHHHH
T ss_pred ceECCCCCch---hhccccCCHHHHHHHHHHHHHHHHHHHH-----------------HHcCC---chHHHHHHHHHHHH
Confidence 5788888543 2223334555668889999999887542 21111 12334556666666
Q ss_pred hCCCceEEEEe
Q 044837 90 DQDNQYRVVYT 100 (125)
Q Consensus 90 ~~~~~~~~~~v 100 (125)
...+.+++.|+
T Consensus 234 ~~~~~~~vdY~ 244 (285)
T 3mxt_A 234 EKEKLIKIDYI 244 (285)
T ss_dssp HTCTTEEEEEE
T ss_pred HhCCCCCccEE
Confidence 66666666665
No 92
>3d3o_A Putative transcriptional regulator, ICIR family; alpha-beta structure, effector domain, structural genomics, protein structure initiative; HET: MSE; 2.46A {Acinetobacter SP}
Probab=23.50 E-value=49 Score=20.66 Aligned_cols=23 Identities=9% Similarity=-0.161 Sum_probs=19.8
Q ss_pred CcceEEEEEEeCCCCCEEEEecc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATS 24 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~ 24 (125)
||..++++-|+|..|.++.+.+.
T Consensus 121 ~gv~~iAaPv~~~~g~~~~alsv 143 (178)
T 3d3o_A 121 VGGGTICVLLPMTIQGQPVTMGL 143 (178)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEEEcCCCCEEEEEEE
Confidence 67889999999999999887664
No 93
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=22.94 E-value=43 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=17.1
Q ss_pred HHHHHHhCcccEEEEeCcHHH
Q 044837 44 LMLAAEVTLSPLVIESDSNSV 64 (125)
Q Consensus 44 l~~a~~~~~~~v~~esDs~~v 64 (125)
++.+......+|.+|||+..+
T Consensus 203 ~~~~~~~p~drlLleTD~P~~ 223 (301)
T 2xio_A 203 LEVLKSIPSEKLMIETDAPWC 223 (301)
T ss_dssp HHHHHTSCGGGEEECCCTTSC
T ss_pred HHHHHhCChHHEEEecCCCcc
Confidence 356677889999999999853
No 94
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=22.94 E-value=93 Score=18.42 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=16.8
Q ss_pred CcceEEEEEEeCCCCCEEEEec
Q 044837 2 AVFAGLGCIIRNCEGAVMVTAT 23 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~ 23 (125)
|-..++++++.|.+|+++....
T Consensus 6 ~~~~~v~~vi~~~~~~vLL~~r 27 (153)
T 3grn_A 6 PYIISVYALIRNEKGEFLLLRR 27 (153)
T ss_dssp CEEEEEEEEEECTTCCEEEEEE
T ss_pred ceEEEEEEEEEcCCCcEEEEEE
Confidence 4456788899988899887654
No 95
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=22.12 E-value=96 Score=20.75 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.3
Q ss_pred CcceEEEEEEeCCCCCEEEEecc
Q 044837 2 AVFAGLGCIIRNCEGAVMVTATS 24 (125)
Q Consensus 2 ~g~~g~G~vird~~g~~i~~~~~ 24 (125)
||..++++-|+|..|.++.+.+.
T Consensus 203 ~g~~~vAaPI~~~~g~~~aalsv 225 (260)
T 2o0y_A 203 LGSSGLSFPLVDSHGTVVAALTL 225 (260)
T ss_dssp TTEEEEEEEEECTTCCEEEEEEE
T ss_pred CCceEEEEEEECCCCCEEEEEEE
Confidence 67889999999999998876553
No 96
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=22.11 E-value=47 Score=13.81 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=7.9
Q ss_pred hHHHHHHhhhh
Q 044837 106 LVTHDLAKMAL 116 (125)
Q Consensus 106 ~~Ad~LAk~a~ 116 (125)
..||.|||.-.
T Consensus 8 dfadelakllr 18 (26)
T 1sn9_A 8 DFADELAKLLR 18 (26)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 46888888654
No 97
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=22.10 E-value=36 Score=19.74 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=16.8
Q ss_pred eCcHHHHHHHHcCCCCcchHHHHHHHH
Q 044837 59 SDSNSVTKFILKGISCRGELDLIICEI 85 (125)
Q Consensus 59 sDs~~vv~~l~~~~~~~~~~~~~i~~i 85 (125)
.||+.+++.+.+...+..++..++.++
T Consensus 46 PdCk~iLkal~g~~~tl~em~~yi~~~ 72 (96)
T 1eoq_A 46 PDIQQLIRTAPSTLTTPGEIIKYVLDR 72 (96)
T ss_dssp HHHHHHHHHCCSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence 589999988866555444444444433
No 98
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}
Probab=21.56 E-value=28 Score=23.69 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.0
Q ss_pred HHHHHHhCcccEEEEeCcHH
Q 044837 44 LMLAAEVTLSPLVIESDSNS 63 (125)
Q Consensus 44 l~~a~~~~~~~v~~esDs~~ 63 (125)
.+.+...+..++.+|||+..
T Consensus 191 ~~~v~~ipldrlLlETD~P~ 210 (261)
T 3guw_A 191 ARIVAEHGPERFMLNSDAGY 210 (261)
T ss_dssp TTGGGGCC-CCEEEECCCCC
T ss_pred HHHHHhCCcceEEEecCCCC
Confidence 35677789999999999986
No 99
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=21.28 E-value=1.6e+02 Score=18.44 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=31.6
Q ss_pred EEEEEeCCCCCEEEEe----cccCCCCCChhHHHHHHHHHHHH-HHHHh---CcccEEEEeCcHHHH
Q 044837 7 LGCIIRNCEGAVMVTA----TSKKPCLGDVEITEVLAILGGLM-LAAEV---TLSPLVIESDSNSVT 65 (125)
Q Consensus 7 ~G~vird~~g~~i~~~----~~~~~~~~~~~~AE~~Al~~al~-~a~~~---~~~~v~~esDs~~vv 65 (125)
-++++-+.+|.++... ..... ..+..-|.+-++.-..+ .+..+ .++.+.+|++.-.++
T Consensus 30 ~~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~ 95 (163)
T 1j3w_A 30 RYALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLY 95 (163)
T ss_dssp SEEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEE
T ss_pred eEEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEE
Confidence 4788889999998772 11111 11122233333332222 22333 578999999987664
No 100
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=20.98 E-value=1.5e+02 Score=17.80 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=20.7
Q ss_pred EEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHH
Q 044837 9 CIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGL 44 (125)
Q Consensus 9 ~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al 44 (125)
.++-|.+|.+......... ...+..-|+++++.+|
T Consensus 122 tflID~~G~I~~~~~~~~~-~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 122 VFVIDKEGKVRYKWVSDDP-TKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EEEECTTSBEEEEEEESST-TCCCCHHHHHHHHHHT
T ss_pred EEEECCCCEEEEEEECCCC-CCCCCHHHHHHHHHHh
Confidence 4677999998766543222 2334455666665554
No 101
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=20.47 E-value=1.8e+02 Score=18.65 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=29.5
Q ss_pred EEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHh
Q 044837 8 GCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEV 50 (125)
Q Consensus 8 G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~ 50 (125)
..+|-|.+|.++........ ......|++..+.+++.+...
T Consensus 162 ~~~lID~~G~I~~~~~g~~~--~~~~~~~il~~l~~l~~~~~~ 202 (222)
T 3ztl_A 162 GLFIIDPNGILRQITINDKP--VGRSVDETLRLLDAFQFVEKH 202 (222)
T ss_dssp EEEEECTTSEEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEEecCCC--CCCCHHHHHHHHHHhhccccc
Confidence 47888999999887655433 233578888888888877544
No 102
>1t23_A Chromosomal protein MC1; alpha/beta barrel, DNA binding protein; NMR {Methanosarcina thermophila} SCOP: d.247.1.1 PDB: 2khl_A
Probab=20.21 E-value=57 Score=18.62 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.7
Q ss_pred EEEeCCCCCEEEEecccCC
Q 044837 9 CIIRNCEGAVMVTATSKKP 27 (125)
Q Consensus 9 ~vird~~g~~i~~~~~~~~ 27 (125)
+++||.+|.-+..+++..+
T Consensus 6 F~Lr~~~G~E~gvFtG~~P 24 (93)
T 1t23_A 6 FVLRDEDGNEHGVFTGKQP 24 (93)
T ss_dssp EEECTTTTSCCEEEEESST
T ss_pred EEEEcCCCcccceEcCCCh
Confidence 7899999998888887544
No 103
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=20.18 E-value=1.3e+02 Score=16.84 Aligned_cols=48 Identities=4% Similarity=0.028 Sum_probs=30.4
Q ss_pred ceEEEEEEeCCCCCEEEEecccCCCCCChhHHHHHHHHHHHHHHHHhCcccEEEEeC
Q 044837 4 FAGLGCIIRNCEGAVMVTATSKKPCLGDVEITEVLAILGGLMLAAEVTLSPLVIESD 60 (125)
Q Consensus 4 ~~g~G~vird~~g~~i~~~~~~~~~~~~~~~AE~~Al~~al~~a~~~~~~~v~~esD 60 (125)
.+-+=|.|+..+|++|...-. + .+ -.++..||+..+...-...+++..
T Consensus 32 ~Gq~rFrLkA~NGevIasSe~-Y---~s-----k~~a~~GIeSVk~nA~~a~i~D~t 79 (83)
T 2k7i_A 32 AGEYRFRFKASNGETMFSSEG-Y---KA-----KASAIHAIESIKRNSAGADTVDLT 79 (83)
T ss_dssp TSCEEEEECCTTSCCCEEBCC-S---SS-----HHHHHHHHHHHHHHTTTSEEEECC
T ss_pred CCCEEEEEEECCCCEEEECCC-c---CC-----HHHHHHHHHHHHHHCCCCceEecc
Confidence 345778888888888873322 2 22 135667888888777666666543
No 104
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=20.15 E-value=1.6e+02 Score=17.93 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCcccEEEEeCcHHHHHHHHcC
Q 044837 40 ILGGLMLAAEVTLSPLVIESDSNSVTKFILKG 71 (125)
Q Consensus 40 l~~al~~a~~~~~~~v~~esDs~~vv~~l~~~ 71 (125)
+..++++|.+.|+..+.+++++...+....+.
T Consensus 148 l~~~~~~a~~~g~~~i~~~~~n~~a~~~Y~k~ 179 (217)
T 4fd4_A 148 LQFQMDLSKKLGFKAISGDFTSVFSVKLAEKL 179 (217)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHC
Confidence 45677889999999999999987777776653
Done!