BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044840
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 81/134 (60%), Gaps = 18/134 (13%)
Query: 12 QDLPQDYVNAHNAARAQVGVNPLKCDESIAAFARSYAKP---------CGSSGNLSGADG 62
Q+ PQDY+ HN ARAQVGV P+ D ++A+ A++YA G+ NL+ G
Sbjct: 1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGG 60
Query: 63 ---------LWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFIG 113
LWVSE+ Y+Y +N C GK C HYT VVWRNSVR+GC + RCNNG FI
Sbjct: 61 DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFIS 120
Query: 114 CNYASPGDVVGQKP 127
CNY G+ +GQ+P
Sbjct: 121 CNYDPVGNWIGQRP 134
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 47/160 (29%)
Query: 12 QDLPQDYVNAHNAARAQVGVNP-----LKCDESIAAFARSYAKPCGSSGN---------- 56
+D +D V HN R++V + D ++A A+++A C S N
Sbjct: 16 EDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLH 75
Query: 57 -------------------LSGADGLWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVR 97
+S A W E DYD+ + C KVCGHYT VVW +S +
Sbjct: 76 PNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK--KVCGHYTQVVWADSYK 133
Query: 98 IGCAKVRC---------NNGGTFIGCNYASPGDVVGQKPY 128
+GCA C +NG FI CNY PG PY
Sbjct: 134 VGCAVQFCPKVSGFDALSNGAHFI-CNYG-PGGNYPTWPY 171
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 9 SRAQDLPQDYVNAHNAARAQVGVNPLKCDESIAAFARSYAK-----------PCGSSG-- 55
S ++ + + AHN R + GV PLK +++ A+ Y++ P S G
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQX 63
Query: 56 --NLSGAD---------GLWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVR 104
NL+ A W SE +Y++ +G GH+T +VW+N+ ++G K
Sbjct: 64 GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 121
Query: 105 CNNGGTFIGCNYASPGDVVGQ 125
++G +F+ Y G+VV +
Sbjct: 122 ASDGSSFVVARYFPAGNVVNE 142
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 9 SRAQDLPQDYVNAHNAARAQVGVNPLKCDESIAAFARSYAK-----------PCGSSG-- 55
S ++ + + AHN R + GV PLK +++ A+ Y++ P S G
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 56 --NLSGAD---------GLWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVR 104
NL+ A W SE +Y++ +G GH+T +VW+N+ ++G K
Sbjct: 64 GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 121
Query: 105 CNNGGTFIGCNYASPGDVVGQ 125
++G +F+ Y G+VV +
Sbjct: 122 ASDGSSFVVARYFPAGNVVNE 142
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 3 LALALPSRAQDLPQDYVN----AHNAARAQVGVNPLKCDESIAAFARSYAKPCGSSGNLS 58
L + SRA + + N AH+ + V L+C E+I F S P S
Sbjct: 29 LQMKWNSRAAQNAKRWANRCTFAHSPPNKRT-VGKLRCGENI--FMSSQPFP------WS 79
Query: 59 GADGLWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFIGCNYAS 118
G W E ++ Y + G V GHYT VVW S IGCA +C++ C Y
Sbjct: 80 GVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSSKYLYVCQYCP 139
Query: 119 PGDVVG 124
G++ G
Sbjct: 140 AGNIRG 145
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 31 VNPLKCDESIAAFARSYAKPCGSSGNLSGADGLWVSEKDDYDYNSNSCNAGKVCGHYTHV 90
V L+C E+I F S P SG W E ++ Y + G V GHYT V
Sbjct: 59 VGKLRCGENI--FMSSQPFP------WSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQV 110
Query: 91 VWRNSVRIGCAKVRCNNGGTFIGCNYASPGDVVG 124
VW S IGCA +C++ C Y G++ G
Sbjct: 111 VWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRG 144
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 19 VNAHNAARAQVGVNPLKCDESIAAFARSYAKPCGSSGNLSGADGLWVSEKDDYDYNSNSC 78
+ +H++ ++V + +KC E+I Y P + W E D+ Y +
Sbjct: 57 IESHSSYESRV-IEGIKCGENI------YMSP--YPMKWTDIIHAWHDEYKDFKYGVGAD 107
Query: 79 NAGKVCGHYTHVVWRNSVRIGCAKVRCNNG--GTFIGCNYASPGDVVGQ 125
V GHYT +VW S RIGCA C + F C Y G+ +G+
Sbjct: 108 PPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 64 WVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG--GTFIGCNYASPGD 121
W E D+ Y + + V GHYT +VW S R GCA C + F C Y G+
Sbjct: 93 WHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQYCPAGN 152
Query: 122 VVGQ 125
++G+
Sbjct: 153 IIGK 156
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 63 LWVSEKDDYD------YNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRC----NNGGTFI 112
LW +E D+D + S+ KV GHYT +VW + +IGC ++ N ++
Sbjct: 134 LWYNEVKDFDNRWISSFPSDDNILMKV-GHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYL 192
Query: 113 GCNYASPGDVVGQKPY 128
CNY G+V+G Y
Sbjct: 193 VCNYGPAGNVLGAPIY 208
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 33/153 (21%)
Query: 9 SRAQDLPQDYVNAHNAARAQV---GVNPLKCD--ESIAAFARSYAKPCG---SSGNLSGA 60
+R + ++ V+ HN+ R +V N LK + A+ A +A C S NL
Sbjct: 9 TRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVL 68
Query: 61 DG---------------------LWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 99
+G LW E ++ Y + G V GHYT +VW + R G
Sbjct: 69 EGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAG 128
Query: 100 CAKVRCNNGG--TFIGCNYASPGDVVGQ--KPY 128
CA C + F C Y G+ G+ PY
Sbjct: 129 CAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY 161
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 33/153 (21%)
Query: 9 SRAQDLPQDYVNAHNAARAQV---GVNPLKCD--ESIAAFARSYAKPCG---SSGNLSGA 60
+R + ++ V+ HN+ R +V N LK + A+ A +A C S NL
Sbjct: 9 TRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVL 68
Query: 61 DG---------------------LWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 99
+G LW E ++ Y + G V GHYT +VW + R G
Sbjct: 69 EGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAG 128
Query: 100 CAKVRCNNGG--TFIGCNYASPGDVVGQ--KPY 128
CA C + F C Y G+ G+ PY
Sbjct: 129 CAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY 161
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 85 GHYTHVVWRNSVRIGCAKVRCNNGGTFIGCNYASPGDVVGQKPY 128
GHYT +VW+ +V++GC C+N ++ C Y G+++G+ Y
Sbjct: 133 GHYTQMVWQETVKLGCYVEACSN-MCYVVCQYGPAGNMMGKDIY 175
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 18 YVNAHNAARAQVGVNPLKCDESIAAFARSYAKPCGSSGNLSGADGLWVSEKDDYDYNSNS 77
Y ++H R +G N K S+ F ++ A A LW +E +Y ++
Sbjct: 293 YQHSHGEDRPGLGENIYK--TSVLKFDKNKAA--------KQASQLWWNELKEYGVGPSN 342
Query: 78 CNAGKV-------CGHYTHVVWRNSVRIGCAKVRCNNGGTFIGCNYASPGDVVGQKPY 128
+ GHYT + W + ++GCA V CN+ TF C Y G+ +G Y
Sbjct: 343 VLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCND-FTFGVCQYGPGGNYMGHVIY 399
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 63 LWVSEKDDYDYNSN-SCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG---GTFIGCNYAS 118
+W E DY+ S N GHYT +VW N+ +GC ++ ++ CNY
Sbjct: 137 MWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGP 196
Query: 119 PGDVVGQKPY 128
G+ ++ Y
Sbjct: 197 SGNFKNEELY 206
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 48 AKPCG--SSGNLSGADGLWVSEKDDYD 72
A+P G + GN GA WV +DDYD
Sbjct: 22 AQPSGELTIGNYMGALRQWVQMQDDYD 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,354,969
Number of Sequences: 62578
Number of extensions: 174573
Number of successful extensions: 349
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 19
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)