Query 044840
Match_columns 128
No_of_seqs 179 out of 1059
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 1.7E-38 3.7E-43 213.4 10.8 113 16-128 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 3.1E-35 6.6E-40 195.9 8.6 110 13-124 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 3.4E-34 7.3E-39 191.1 6.7 108 13-122 1-132 (132)
4 cd05383 SCP_CRISP SCP_CRISP: S 100.0 2.9E-33 6.3E-38 188.6 8.8 106 14-119 2-138 (138)
5 smart00198 SCP SCP / Tpx-1 / A 100.0 6.3E-33 1.4E-37 187.5 7.8 106 14-119 2-144 (144)
6 cd05385 SCP_GLIPR-1_like SCP_G 100.0 1.3E-32 2.8E-37 186.6 8.7 105 13-119 1-144 (144)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 1.1E-31 2.3E-36 180.6 7.3 103 15-117 1-136 (136)
8 cd00168 SCP SCP: SCP-like extr 100.0 2.5E-30 5.4E-35 170.5 7.6 100 16-117 2-122 (122)
9 KOG3017 Defense-related protei 100.0 5.3E-31 1.1E-35 190.1 3.9 116 13-128 40-198 (225)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 4E-29 8.6E-34 168.1 6.6 103 15-117 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.8 2.6E-21 5.6E-26 124.1 6.0 98 19-116 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.5 1.4E-13 3E-18 91.5 6.9 104 13-116 3-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.3 1.5E-11 3.3E-16 79.9 6.5 101 16-116 2-121 (122)
14 COG2340 Uncharacterized protei 98.5 4.9E-07 1.1E-11 64.8 6.6 101 11-121 77-194 (207)
15 KOG0286 G-protein beta subunit 66.9 3 6.6E-05 31.8 1.2 34 89-123 79-112 (343)
16 KOG4439 RNA polymerase II tran 37.4 32 0.00069 29.7 2.6 44 6-49 776-841 (901)
17 PF08557 Lipid_DES: Sphingolip 27.5 71 0.0015 16.7 2.1 22 13-34 17-38 (39)
18 PF04863 EGF_alliinase: Alliin 25.7 67 0.0014 18.2 1.9 22 34-55 1-23 (56)
19 PF03295 Pox_TAA1: Poxvirus tr 23.3 86 0.0019 18.1 2.0 18 13-30 24-41 (63)
20 PF13983 YsaB: YsaB-like lipop 22.3 59 0.0013 19.3 1.3 14 109-122 58-71 (77)
21 cd07356 HN_L-whirlin_R1_like F 22.2 90 0.002 18.9 2.1 24 8-31 14-37 (78)
22 COG1318 Predicted transcriptio 20.9 64 0.0014 22.7 1.4 19 31-49 39-57 (182)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.7e-38 Score=213.38 Aligned_cols=113 Identities=62% Similarity=1.221 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHhccc----CC------CCCC---------Ccccc--cceecccccCCCC
Q 044840 16 QDYVNAHNAARAQVGVNPLKCDESIAAFARSYAKP----CG------SSGN---------LSGAD--GLWVSEKDDYDYN 74 (128)
Q Consensus 16 ~~iL~~HN~~R~~~~m~~L~Wd~~La~~A~~~a~~----C~------~~g~---------~~~~~--~~W~~e~~~y~~~ 74 (128)
+.||+.||.+|+.++|++|+||++||+.||.||++ |. ..|+ .++.+ +.|++|...|++.
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYD 81 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCC
Confidence 68999999999999999999999999999999999 65 1232 11222 8999999999999
Q ss_pred CCCCCCCccchhHHHHHHhcCCeEeEEEEEeCC-CCEEEEEEccCCCCCCCCCCC
Q 044840 75 SNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNN-GGTFIGCNYASPGDVVGQKPY 128 (128)
Q Consensus 75 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~GN~~g~~~Y 128 (128)
.+.+..+..++|||||||++|++||||++.|.+ +..++||+|+|+||+.|++||
T Consensus 82 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 82 SNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 888776678999999999999999999999987 468999999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=3.1e-35 Score=195.93 Aligned_cols=110 Identities=35% Similarity=0.803 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHhcccCCC----------CCC-----C-cccc--cceecccccCCCC
Q 044840 13 DLPQDYVNAHNAARAQVGVNPLKCDESIAAFARSYAKPCGS----------SGN-----L-SGAD--GLWVSEKDDYDYN 74 (128)
Q Consensus 13 ~~~~~iL~~HN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~----------~g~-----~-~~~~--~~W~~e~~~y~~~ 74 (128)
++++.||+.||.+|+.++|++|+||++|+..||.||++|.. .|+ + ++.+ +.|++|...|+|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~~~~~~v~~W~~e~~~y~~~ 80 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYPSGTSAVDAWYDEIEDYDYS 80 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecCCHHHHHHHHHhhhhhCCCC
Confidence 46899999999999999999999999999999999999871 122 1 1122 8999999999998
Q ss_pred CCCCCCCccchhHHHHHHhcCCeEeEEEEEeCCC-CEEEEEEccCCCCCCC
Q 044840 75 SNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG-GTFIGCNYASPGDVVG 124 (128)
Q Consensus 75 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~-~~~~vC~Y~p~GN~~g 124 (128)
.+.+ +..++|||||||++|++||||++.|... ..++||+|+|+||+.|
T Consensus 81 ~~~~--~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 81 NPGF--SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCC--CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 7554 3569999999999999999999999873 5889999999999876
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=3.4e-34 Score=191.15 Aligned_cols=108 Identities=31% Similarity=0.631 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHhcccCCC-----------CCCC-----------cccc--cceeccc
Q 044840 13 DLPQDYVNAHNAARAQVGVNPLKCDESIAAFARSYAKPCGS-----------SGNL-----------SGAD--GLWVSEK 68 (128)
Q Consensus 13 ~~~~~iL~~HN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~-----------~g~~-----------~~~~--~~W~~e~ 68 (128)
++++.||+.||.+|+.++|++|+||++|+..||.||++|.. .|+. ++.+ +.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999971 1221 1112 8999999
Q ss_pred ccCCCCCCCCCCCccchhHHHHHHhcCCeEeEEEEEeCCCCEEEEEEccCCCCC
Q 044840 69 DDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFIGCNYASPGDV 122 (128)
Q Consensus 69 ~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~GN~ 122 (128)
.+|++..+.. +..++|||||||+++++||||++.|..+..++||+|+|+||+
T Consensus 81 ~~y~~~~~~~--~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 81 KKYDFNKPGF--SSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred ccCCCCCCCC--CCCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 9999985543 356999999999999999999999997778999999999996
No 4
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=2.9e-33 Score=188.57 Aligned_cols=106 Identities=33% Similarity=0.652 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHhhcC-----CCCCccCHHHHHHHHHhcccCC---C-----------CCCC--------cccc--cce
Q 044840 14 LPQDYVNAHNAARAQVG-----VNPLKCDESIAAFARSYAKPCG---S-----------SGNL--------SGAD--GLW 64 (128)
Q Consensus 14 ~~~~iL~~HN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~C~---~-----------~g~~--------~~~~--~~W 64 (128)
.|+.||+.||.+|+.+. |++|+||++||..||.||++|. + .|+. +..+ +.|
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~av~~W 81 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWANTCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDVIQAW 81 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHhcCCCcCCchhhcccCCCCcceeeeccCCCCCHHHHHHHH
Confidence 57899999999999985 7789999999999999999998 1 1221 0112 899
Q ss_pred ecccccCCCCCCCCCCCccchhHHHHHHhcCCeEeEEEEEeCCC--CEEEEEEccCC
Q 044840 65 VSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG--GTFIGCNYASP 119 (128)
Q Consensus 65 ~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~ 119 (128)
|+|..+|+|..+.+..+..++|||||||++|++||||++.|..+ ++++||+|+|+
T Consensus 82 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 82 YDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 99999999998776666789999999999999999999999874 68999999995
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.98 E-value=6.3e-33 Score=187.45 Aligned_cols=106 Identities=38% Similarity=0.739 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHhhcC-----------CCCCccCHHHHHHHHHhcccCC-------CCCCC----c-----cc----c-
Q 044840 14 LPQDYVNAHNAARAQVG-----------VNPLKCDESIAAFARSYAKPCG-------SSGNL----S-----GA----D- 61 (128)
Q Consensus 14 ~~~~iL~~HN~~R~~~~-----------m~~L~Wd~~La~~A~~~a~~C~-------~~g~~----~-----~~----~- 61 (128)
+|+.||+.||.+|+.++ |++|+||++||..||.||++|. ..|+. . .. +
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~GeNi~~~~~~~~~~~~~~~~a 81 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWANQCPFGHSTPRGYGENLAWWSSSTDLPITYASAA 81 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHHhCCCcCCCcCCcCcceEEecccCcccchhHHHH
Confidence 68899999999999999 9999999999999999999998 12320 0 11 1
Q ss_pred -cceecccccCCCCCCCCCC-CccchhHHHHHHhcCCeEeEEEEEeCCCC---EEEEEEccCC
Q 044840 62 -GLWVSEKDDYDYNSNSCNA-GKVCGHYTHVVWRNSVRIGCAKVRCNNGG---TFIGCNYASP 119 (128)
Q Consensus 62 -~~W~~e~~~y~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~---~~~vC~Y~p~ 119 (128)
+.|++|..+|++..+.+.. +..++|||||||+++++||||++.|.++. .++||+|+|+
T Consensus 82 v~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 82 VQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 8999999999999887764 56799999999999999999999998864 6999999985
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.98 E-value=1.3e-32 Score=186.60 Aligned_cols=105 Identities=38% Similarity=0.755 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHhhcC-----CCCCccCHHHHHHHHHhcccCCC------------------CCCC---------ccc
Q 044840 13 DLPQDYVNAHNAARAQVG-----VNPLKCDESIAAFARSYAKPCGS------------------SGNL---------SGA 60 (128)
Q Consensus 13 ~~~~~iL~~HN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~C~~------------------~g~~---------~~~ 60 (128)
+++++||+.||.+|+.|. |++|+||++||..||.||++|.. .|+. ++.
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~~~~ 80 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIFSPK 80 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHhcCCCCCCchhhcccccccccCcccceeeecccCCCCHH
Confidence 578999999999999994 89999999999999999999960 1221 111
Q ss_pred c--cceecccccCCCCCCCCCCCccchhHHHHHHhcCCeEeEEEEEeCCC-----CEEEEEEccCC
Q 044840 61 D--GLWVSEKDDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG-----GTFIGCNYASP 119 (128)
Q Consensus 61 ~--~~W~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~ 119 (128)
+ +.||+|..+|+|..+.+. ..++|||||||++|++||||++.|..+ ..++||+|+|+
T Consensus 81 ~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 81 NAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred HHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 1 799999999999887664 469999999999999999999999874 36999999984
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.97 E-value=1.1e-31 Score=180.61 Aligned_cols=103 Identities=41% Similarity=0.809 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhcC-----CCCCccCHHHHHHHHHhcccCC----------CCCCC---------cccc--cceeccc
Q 044840 15 PQDYVNAHNAARAQVG-----VNPLKCDESIAAFARSYAKPCG----------SSGNL---------SGAD--GLWVSEK 68 (128)
Q Consensus 15 ~~~iL~~HN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~C~----------~~g~~---------~~~~--~~W~~e~ 68 (128)
|+.||+.||.+|+.++ |.+|+||++||..||.||++|. +.|+. +..+ +.|++|.
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W~~e~ 80 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDWNNEK 80 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHHhccccCCCcccCCCceeeeeecCCCCCCHHHHHHHHHHHH
Confidence 5789999999999996 7789999999999999999997 12221 1122 8999999
Q ss_pred ccCCCCCCCCCCCccchhHHHHHHhcCCeEeEEEEEeCCC-------CEEEEEEcc
Q 044840 69 DDYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG-------GTFIGCNYA 117 (128)
Q Consensus 69 ~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~-------~~~~vC~Y~ 117 (128)
.+|+|..+.+..+..++|||||||++|++||||++.|.++ ..++||+|+
T Consensus 81 ~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 81 LDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999998877777789999999999999999999999652 479999995
No 8
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.96 E-value=2.5e-30 Score=170.53 Aligned_cols=100 Identities=35% Similarity=0.738 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhc-CCCCCccCHHHHHHHHHhcccCC----------CCCCC--------cccc--cceecccccCCCC
Q 044840 16 QDYVNAHNAARAQV-GVNPLKCDESIAAFARSYAKPCG----------SSGNL--------SGAD--GLWVSEKDDYDYN 74 (128)
Q Consensus 16 ~~iL~~HN~~R~~~-~m~~L~Wd~~La~~A~~~a~~C~----------~~g~~--------~~~~--~~W~~e~~~y~~~ 74 (128)
+.||+.||.+|+.+ +|++|+||++|+..||.||++|. ..|+. ++.. +.|++|..+|+|.
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIKNYNFG 81 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHHhCCCC
Confidence 57999999999999 99999999999999999999996 01221 2222 8999999999998
Q ss_pred CCCCCCCccchhHHHHHHhcCCeEeEEEEEeCCCCEEEEEEcc
Q 044840 75 SNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFIGCNYA 117 (128)
Q Consensus 75 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~ 117 (128)
++.. +..++||+||||+++++||||++.|..+..++||+|+
T Consensus 82 ~~~~--~~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 82 QPGF--SSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred CCCC--CCCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 5543 4569999999999999999999999977799999995
No 9
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=99.96 E-value=5.3e-31 Score=190.09 Aligned_cols=116 Identities=41% Similarity=0.847 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHhhcC-----CCCCccCHHHHHHHHHhcccCCC---------C---CC-----Ccc-------c---
Q 044840 13 DLPQDYVNAHNAARAQVG-----VNPLKCDESIAAFARSYAKPCGS---------S---GN-----LSG-------A--- 60 (128)
Q Consensus 13 ~~~~~iL~~HN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~C~~---------~---g~-----~~~-------~--- 60 (128)
+++++|++.||.+|..+. |++|+||++||..||.||++|.. . |+ +.. .
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~ 119 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWANTCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLDTSGA 119 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHhhCCcccCccccccCCCCcccceeeccCCCCccccccHH
Confidence 788999999999999999 99999999999999999999981 0 32 111 1
Q ss_pred c--cceecccccCCCCCCCCCC---CccchhHHHHHHhcCCeEeEEEEEeCCC-----CEEEEEEccCCCCCCC-CCCC
Q 044840 61 D--GLWVSEKDDYDYNSNSCNA---GKVCGHYTHVVWRNSVRIGCAKVRCNNG-----GTFIGCNYASPGDVVG-QKPY 128 (128)
Q Consensus 61 ~--~~W~~e~~~y~~~~~~~~~---~~~~~hftq~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~GN~~g-~~~Y 128 (128)
. ..|+.|...|++.++.+.. +..++|||||||++|++||||++.|.++ ..++||+|+|+||..+ +.||
T Consensus 120 ~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y 198 (225)
T KOG3017|consen 120 LAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPY 198 (225)
T ss_pred HHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcC
Confidence 1 8899999999999998875 6789999999999999999999999886 6799999999955555 6776
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.96 E-value=4e-29 Score=168.08 Aligned_cols=103 Identities=37% Similarity=0.746 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhc------------CCCCCccCHHHHHHHHHhcccCC----------CCCCC------c-------c
Q 044840 15 PQDYVNAHNAARAQV------------GVNPLKCDESIAAFARSYAKPCG----------SSGNL------S-------G 59 (128)
Q Consensus 15 ~~~iL~~HN~~R~~~------------~m~~L~Wd~~La~~A~~~a~~C~----------~~g~~------~-------~ 59 (128)
|+.||+.||.+|+.+ .|++|+||.+||..|+.||++|. ..|+. + +
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~ 80 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFEHSPCRNTGGVGQNLAAGSSTGSTVEELA 80 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHhcCCCcCCcccCCCCCCcEEEEeccCCCCHHHHH
Confidence 468999999999999 69999999999999999999995 12320 1 1
Q ss_pred cc--cceecccccCCCCCC-CCCCCccchhHHHHHHhcCCeEeEEEEEeCC---CCEEEEEEcc
Q 044840 60 AD--GLWVSEKDDYDYNSN-SCNAGKVCGHYTHVVWRNSVRIGCAKVRCNN---GGTFIGCNYA 117 (128)
Q Consensus 60 ~~--~~W~~e~~~y~~~~~-~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~---~~~~~vC~Y~ 117 (128)
.+ +.|++|...|++... .+..+..++|||||||+++++||||++.|.. ...++||+|+
T Consensus 81 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 81 EDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 11 789999999999875 3444677999999999999999999999985 3699999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.84 E-value=2.6e-21 Score=124.08 Aligned_cols=98 Identities=36% Similarity=0.657 Sum_probs=72.6
Q ss_pred HHHHHHHH-hhcCCCCCccCHHHHHHHHHhcccCCCCCC--------------Cccc-------ccceecccccCCCCC-
Q 044840 19 VNAHNAAR-AQVGVNPLKCDESIAAFARSYAKPCGSSGN--------------LSGA-------DGLWVSEKDDYDYNS- 75 (128)
Q Consensus 19 L~~HN~~R-~~~~m~~L~Wd~~La~~A~~~a~~C~~~g~--------------~~~~-------~~~W~~e~~~y~~~~- 75 (128)
|+.||++| ....+++|+||++|++.|+.+|+.|..... .... ...|+.+...+++..
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYNFQNQ 80 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEETTCS
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccccccc
Confidence 78999999 888888899999999999999999983110 0010 156999888888762
Q ss_pred -CCCCCCccchhHHHHHHhcCCeEeEEEEEeCCCC--EEEEEEc
Q 044840 76 -NSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNGG--TFIGCNY 116 (128)
Q Consensus 76 -~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~--~~~vC~Y 116 (128)
........++||+||+|..+++||||++.|..+. .++||.|
T Consensus 81 ~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 81 SIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred hhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 1112245689999999999999999999999875 9999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.47 E-value=1.4e-13 Score=91.49 Aligned_cols=104 Identities=25% Similarity=0.298 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHhcccCCCCCCC--------cccc------c--ceecccccCCCCCC
Q 044840 13 DLPQDYVNAHNAARAQVGVNPLKCDESIAAFARSYAKPCGSSGNL--------SGAD------G--LWVSEKDDYDYNSN 76 (128)
Q Consensus 13 ~~~~~iL~~HN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~~g~~--------~~~~------~--~W~~e~~~y~~~~~ 76 (128)
++.+++|+.||.+|..++++||+||+.|++.|+.||+.+...+.+ ++.+ . ....|...+.+.+.
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~~~~ 82 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGNSTV 82 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccCCCH
Confidence 467889999999999999999999999999999999987622111 1111 1 11233333322221
Q ss_pred CC--CC-CccchhHHHHHHhcCCeEeEEEEEeCCCCEEEEEEc
Q 044840 77 SC--NA-GKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFIGCNY 116 (128)
Q Consensus 77 ~~--~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y 116 (128)
.. .. ....+|+++|+|++.++||||++.+.+++.|+|=.|
T Consensus 83 ~~~v~~W~~S~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F 125 (127)
T TIGR02909 83 EAVHNAWMNSPGHRANILNPNYTEIGVGYVEGGSGGIYWTQMF 125 (127)
T ss_pred HHHHHHHHcCHhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEe
Confidence 10 00 134799999999999999999999887766666554
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.27 E-value=1.5e-11 Score=79.91 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhcCCCCCccCHHHHHHHHHhcccCCCCCCCccc------------c---cce-ecccccCCCCCCC--
Q 044840 16 QDYVNAHNAARAQVGVNPLKCDESIAAFARSYAKPCGSSGNLSGA------------D---GLW-VSEKDDYDYNSNS-- 77 (128)
Q Consensus 16 ~~iL~~HN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~~g~~~~~------------~---~~W-~~e~~~y~~~~~~-- 77 (128)
+.+++.+|.+|..++++||+||.+|+..|+.+|..+...+.++.. . ... +.|...+.+....
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~~~~~~ 81 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYSTAEAA 81 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCCCHHHH
Confidence 578999999999999999999999999999999988622211100 0 000 1222222211000
Q ss_pred CCC-CccchhHHHHHHhcCCeEeEEEEEeCCCCEEEEEEc
Q 044840 78 CNA-GKVCGHYTHVVWRNSVRIGCAKVRCNNGGTFIGCNY 116 (128)
Q Consensus 78 ~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y 116 (128)
... ....+|+.+|+++..+++|||+....++..++|..|
T Consensus 82 ~~~w~~~~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 82 VDGWMNSPGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HHHHhCCHhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 000 123789999999999999999999877667777655
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=98.48 E-value=4.9e-07 Score=64.85 Aligned_cols=101 Identities=22% Similarity=0.221 Sum_probs=68.6
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCCccCHHHHHHHHHhcccCCCCCCC--------cc---c---c--cceecccccCCCC
Q 044840 11 AQDLPQDYVNAHNAARAQVGVNPLKCDESIAAFARSYAKPCGSSGNL--------SG---A---D--GLWVSEKDDYDYN 74 (128)
Q Consensus 11 ~~~~~~~iL~~HN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~~g~~--------~~---~---~--~~W~~e~~~y~~~ 74 (128)
.+++.+.+++.+|.+|..+++++|.||..|+..|+.++......+.+ ++ . . ..|..|...|.+.
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~ 156 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN 156 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence 46778889999999999999999999999999999999966522211 11 0 1 2356676666655
Q ss_pred CCCCCCCccchhHHHHHHhcCCeEeEEEEEeCCC-CEEEEEEccCCCC
Q 044840 75 SNSCNAGKVCGHYTHVVWRNSVRIGCAKVRCNNG-GTFIGCNYASPGD 121 (128)
Q Consensus 75 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~-~~~~vC~Y~p~GN 121 (128)
++. ++..-.|.+|. ||....++.. ..+-||.+.+.++
T Consensus 157 ~~~--------~~~v~~Wl~S~--gH~~nll~~~~~~~Gv~~~~~~~~ 194 (207)
T COG2340 157 DPP--------EAAVDGWLNSP--GHRKNLLNPAYTEIGVGVAYDASN 194 (207)
T ss_pred Cch--------HHHHHHhcCCh--hhhhhccCcchhheeEEEEecCCC
Confidence 432 56666677666 6666655542 4555665555443
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=66.91 E-value=3 Score=31.79 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=22.1
Q ss_pred HHHHhcCCeEeEEEEEeCCCCEEEEEEccCCCCCC
Q 044840 89 HVVWRNSVRIGCAKVRCNNGGTFIGCNYASPGDVV 123 (128)
Q Consensus 89 q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~GN~~ 123 (128)
-+||+.-|.---....-.. ..++.|.|+|.||.+
T Consensus 79 lIvWDs~TtnK~haipl~s-~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPS-SWVMTCAYSPSGNFV 112 (343)
T ss_pred EEEEEcccccceeEEecCc-eeEEEEEECCCCCeE
Confidence 4678776654333322122 589999999999864
No 16
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=37.37 E-value=32 Score=29.70 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=35.0
Q ss_pred cCCCCCChhHHHHHHHHHHHHhhcC----------------------CCCCccCHHHHHHHHHhcc
Q 044840 6 ALPSRAQDLPQDYVNAHNAARAQVG----------------------VNPLKCDESIAAFARSYAK 49 (128)
Q Consensus 6 ~~~~~~~~~~~~iL~~HN~~R~~~~----------------------m~~L~Wd~~La~~A~~~a~ 49 (128)
..+++.-.+|+.+|+..|.-+.... |-.|-||..|++.|+.-.-
T Consensus 776 i~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIY 841 (901)
T KOG4439|consen 776 ITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIY 841 (901)
T ss_pred ecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHH
Confidence 3566777899999999999776321 6788899999999987554
No 17
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=27.50 E-value=71 Score=16.71 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHhhcCCCCC
Q 044840 13 DLPQDYVNAHNAARAQVGVNPL 34 (128)
Q Consensus 13 ~~~~~iL~~HN~~R~~~~m~~L 34 (128)
.-|+.||..|=+++...+-.++
T Consensus 17 ~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 17 SRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHHHHHhChHHHHHhCCCCC
Confidence 4578899999999998876554
No 18
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=25.66 E-value=67 Score=18.19 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=16.2
Q ss_pred CccCHHHHHHHHHhcc-cCCCCC
Q 044840 34 LKCDESIAAFARSYAK-PCGSSG 55 (128)
Q Consensus 34 L~Wd~~La~~A~~~a~-~C~~~g 55 (128)
|+|...-+++|+..|. .|.+-|
T Consensus 1 l~Wt~~Aa~eAeavAai~CSGHG 23 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAAISCSGHG 23 (56)
T ss_dssp -STTHHHHHHHHHHHTS--TTSE
T ss_pred CchHHHHHHHHHHhhcCCcCCCC
Confidence 7899999999999986 787544
No 19
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=23.28 E-value=86 Score=18.10 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHhhcC
Q 044840 13 DLPQDYVNAHNAARAQVG 30 (128)
Q Consensus 13 ~~~~~iL~~HN~~R~~~~ 30 (128)
+..+++++..|.+|++-+
T Consensus 24 ~~Pe~Vi~iIN~lR~keG 41 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEG 41 (63)
T ss_pred cCHHHHHHHHHHhhhccC
Confidence 467889999999999876
No 20
>PF13983 YsaB: YsaB-like lipoprotein
Probab=22.31 E-value=59 Score=19.32 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=11.2
Q ss_pred CEEEEEEccCCCCC
Q 044840 109 GTFIGCNYASPGDV 122 (128)
Q Consensus 109 ~~~~vC~Y~p~GN~ 122 (128)
+.-|||.|+|.|-+
T Consensus 58 ~E~FvCSFD~dGqF 71 (77)
T PF13983_consen 58 KEGFVCSFDADGQF 71 (77)
T ss_pred ccceEEeECCCCcE
Confidence 46799999998754
No 21
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=22.24 E-value=90 Score=18.86 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=19.6
Q ss_pred CCCCChhHHHHHHHHHHHHhhcCC
Q 044840 8 PSRAQDLPQDYVNAHNAARAQVGV 31 (128)
Q Consensus 8 ~~~~~~~~~~iL~~HN~~R~~~~m 31 (128)
..+++.+|+.++..-|.|+++-..
T Consensus 14 ~lLs~~Er~~f~h~Ln~Y~~~RnV 37 (78)
T cd07356 14 KLLSEAEREEFIHCLNDYHAKRNV 37 (78)
T ss_pred HHccHHHHHHHHHHHHHHHhcccH
Confidence 346788999999999999987663
No 22
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=20.85 E-value=64 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=17.5
Q ss_pred CCCCccCHHHHHHHHHhcc
Q 044840 31 VNPLKCDESIAAFARSYAK 49 (128)
Q Consensus 31 m~~L~Wd~~La~~A~~~a~ 49 (128)
..+|+|.+.||..|-..|.
T Consensus 39 ~~~lTWvdSLavAAga~ar 57 (182)
T COG1318 39 YERLTWVDSLAVAAGALAR 57 (182)
T ss_pred ccccchhhHHHHHHHHHHH
Confidence 6799999999999999887
Done!