Your job contains 1 sequence.
>044842
MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT
INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV
QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT
KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL
NILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYC
INDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMY
LCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATN
PVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYP
QIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESP
KSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLL
FN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044842
(602 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q64MA3 - symbol:RAD "Flap endonuclease GEN-like... 1398 5.3e-160 2
MGI|MGI:2443149 - symbol:Gen1 "Gen homolog 1, endonucleas... 457 2.7e-46 2
UNIPROTKB|Q17RS7 - symbol:GEN1 "Flap endonuclease GEN hom... 448 1.8e-44 2
UNIPROTKB|E1B8D0 - symbol:GEN1 "Uncharacterized protein" ... 452 2.3e-44 2
RGD|1559792 - symbol:Gen1 "Gen endonuclease homolog 1 (Dr... 450 4.6e-44 2
UNIPROTKB|F1SCS5 - symbol:GEN1 "Uncharacterized protein" ... 448 7.9e-44 2
UNIPROTKB|E2QU72 - symbol:GEN1 "Uncharacterized protein" ... 447 3.3e-43 2
UNIPROTKB|Q29FC1 - symbol:Gen "Flap endonuclease GEN" spe... 314 4.5e-34 2
FB|FBgn0263831 - symbol:Gen "XPG-like endonuclease" speci... 312 2.4e-30 2
UNIPROTKB|E1BWF2 - symbol:Gga.42587 "Uncharacterized prot... 348 1.2e-29 2
UNIPROTKB|E1C3E4 - symbol:Gga.42587 "Uncharacterized prot... 320 4.6e-28 1
UNIPROTKB|E1C986 - symbol:Gga.42587 "Uncharacterized prot... 316 1.3e-27 1
ASPGD|ASPL0000027656 - symbol:AN5216 species:162425 "Emer... 232 1.3e-26 3
POMBASE|SPBC3E7.08c - symbol:rad13 "DNA repair nuclease R... 180 2.2e-23 3
TAIR|locus:2099463 - symbol:AT3G48900 species:3702 "Arabi... 297 5.4e-23 2
CGD|CAL0003758 - symbol:RAD2 species:5476 "Candida albica... 186 6.0e-23 4
UNIPROTKB|Q59TL2 - symbol:RAD2 "Putative uncharacterized ... 186 6.0e-23 4
SGD|S000003490 - symbol:RAD2 "Single-stranded DNA endonuc... 188 4.6e-22 4
UNIPROTKB|F1P266 - symbol:ERCC5 "Uncharacterized protein"... 181 3.9e-21 3
UNIPROTKB|E1BZY2 - symbol:ERCC5 "Uncharacterized protein"... 181 9.3e-20 3
UNIPROTKB|Q3B7N6 - symbol:ERCC5 "Uncharacterized protein"... 175 1.1e-19 4
UNIPROTKB|P28715 - symbol:ERCC5 "DNA repair protein compl... 172 4.3e-19 4
ZFIN|ZDB-GENE-050327-28 - symbol:ercc5 "excision repair c... 182 1.6e-18 3
TAIR|locus:2091343 - symbol:UVH3 "ULTRAVIOLET HYPERSENSIT... 251 1.6e-18 3
UNIPROTKB|J9P9A3 - symbol:BIVM "Uncharacterized protein" ... 175 2.6e-18 4
MGI|MGI:103582 - symbol:Ercc5 "excision repair cross-comp... 179 9.3e-18 4
UNIPROTKB|P70040 - symbol:fen1-a "Flap endonuclease 1-A" ... 238 2.2e-17 1
RGD|621821 - symbol:Fen1 "flap structure-specific endonuc... 234 6.2e-17 1
UNIPROTKB|P70054 - symbol:fen1-b "Flap endonuclease 1-B" ... 230 1.9e-16 1
MGI|MGI:102779 - symbol:Fen1 "flap structure specific end... 226 5.2e-16 1
ZFIN|ZDB-GENE-050417-81 - symbol:zgc:110269 "zgc:110269" ... 205 6.2e-16 2
UNIPROTKB|F1RKS3 - symbol:FEN1 "Flap endonuclease 1" spec... 222 2.7e-15 2
GENEDB_PFALCIPARUM|PFB0265c - symbol:PFB0265c "DNA repair... 213 3.2e-15 3
UNIPROTKB|O96154 - symbol:PFB0265c "DNA repair endonuclea... 213 3.2e-15 3
UNIPROTKB|J9PB88 - symbol:FEN1 "Flap endonuclease 1" spec... 221 3.5e-15 2
UNIPROTKB|E1BC95 - symbol:ERCC5 "Uncharacterized protein"... 175 3.6e-15 4
UNIPROTKB|P39748 - symbol:FEN1 "Flap endonuclease 1" spec... 221 4.5e-15 2
FB|FBgn0025832 - symbol:Fen1 "Flap endonuclease 1" specie... 217 6.2e-15 1
UNIPROTKB|Q58DH8 - symbol:FEN1 "Flap endonuclease 1" spec... 219 7.9e-15 2
UNIPROTKB|Q5ZLN4 - symbol:FEN1 "Flap endonuclease 1" spec... 215 1.2e-14 2
DICTYBASE|DDB_G0284987 - symbol:repG "XPG" species:44689 ... 216 1.6e-14 2
TAIR|locus:2146824 - symbol:AT5G26680 species:3702 "Arabi... 210 8.8e-14 2
UNIPROTKB|F1P953 - symbol:BIVM "Uncharacterized protein" ... 175 1.1e-13 4
UNIPROTKB|A4QS18 - symbol:FEN1 "Flap endonuclease 1" spec... 210 1.2e-13 2
FB|FBgn0002887 - symbol:mus201 "mutagen-sensitive 201" sp... 191 2.0e-13 3
CGD|CAL0000208 - symbol:orf19.547 species:5476 "Candida a... 181 3.4e-13 2
ASPGD|ASPL0000038590 - symbol:AN2764 species:162425 "Emer... 193 4.1e-13 3
ZFIN|ZDB-GENE-031112-11 - symbol:fen1 "flap structure-spe... 202 5.3e-13 2
WB|WBGene00019004 - symbol:xpg-1 species:6239 "Caenorhabd... 131 4.4e-12 2
POMBASE|SPAC3G6.06c - symbol:rad2 "FEN-1 endonuclease Rad... 182 1.4e-10 2
WB|WBGene00020442 - symbol:gen-1 species:6239 "Caenorhabd... 180 4.7e-10 2
UNIPROTKB|E9PLG0 - symbol:GEN1 "Flap endonuclease GEN hom... 151 8.8e-10 1
WB|WBGene00000794 - symbol:crn-1 species:6239 "Caenorhabd... 171 9.3e-10 1
POMBASE|SPBC29A10.05 - symbol:exo1 "exonuclease I Exo1" s... 171 2.1e-09 1
UNIPROTKB|I3LQY2 - symbol:ERCC5 "Uncharacterized protein"... 179 4.9e-09 2
SGD|S000001596 - symbol:RAD27 "5' to 3' exonuclease" spec... 163 7.2e-09 1
RGD|1309465 - symbol:Exo1 "exonuclease 1" species:10116 "... 165 1.7e-08 1
UNIPROTKB|G4NE19 - symbol:MGG_00841 "Exonuclease 1" speci... 164 2.0e-08 1
UNIPROTKB|E1C1G7 - symbol:EXO1 "Uncharacterized protein" ... 173 2.2e-08 2
UNIPROTKB|E9PM30 - symbol:GEN1 "Flap endonuclease GEN hom... 138 2.2e-08 1
UNIPROTKB|Q9W6K2 - symbol:exo1 "Exonuclease 1" species:83... 152 2.2e-08 2
UNIPROTKB|E1BF15 - symbol:EXO1 "Uncharacterized protein" ... 160 5.8e-08 1
UNIPROTKB|Q9UQ84 - symbol:EXO1 "Exonuclease 1" species:96... 156 2.0e-07 2
ZFIN|ZDB-GENE-040426-2828 - symbol:exo1 "exonuclease 1" s... 154 2.5e-07 1
UNIPROTKB|G4MVT4 - symbol:MGG_01800 "Flap structure-speci... 134 4.1e-07 2
UNIPROTKB|E2QWL7 - symbol:EXO1 "Uncharacterized protein" ... 151 4.2e-07 2
GENEDB_PFALCIPARUM|PFD0420c - symbol:PFD0420c "flap exonu... 156 7.2e-07 2
UNIPROTKB|Q7K734 - symbol:FEN1 "Flap endonuclease 1" spec... 156 7.2e-07 2
MGI|MGI:1349427 - symbol:Exo1 "exonuclease 1" species:100... 159 8.0e-07 3
ASPGD|ASPL0000035217 - symbol:AN3186 species:162425 "Emer... 112 9.7e-07 2
UNIPROTKB|F5H1Y3 - symbol:FEN1 "Flap endonuclease 1" spec... 121 1.5e-06 1
UNIPROTKB|H0YCG6 - symbol:GEN1 "Flap endonuclease GEN hom... 125 2.2e-06 2
DICTYBASE|DDB_G0291570 - symbol:exo1 "5'3'-exonuclease N-... 139 2.7e-06 2
UNIPROTKB|F1S8P2 - symbol:EXO1 "Uncharacterized protein" ... 154 3.4e-06 2
CGD|CAL0003631 - symbol:EXO1 species:5476 "Candida albica... 138 1.1e-05 1
UNIPROTKB|Q9HD60 - symbol:ERCC5 "DNA repair protein-compl... 129 1.1e-05 2
UNIPROTKB|I3LHP7 - symbol:I3LHP7 "Uncharacterized protein... 115 1.9e-05 1
TAIR|locus:2013633 - symbol:AT1G29630 species:3702 "Arabi... 136 2.0e-05 1
ASPGD|ASPL0000033989 - symbol:AN3035 species:162425 "Emer... 130 9.2e-05 1
TAIR|locus:2194085 - symbol:AT1G18090 species:3702 "Arabi... 128 0.00010 1
WB|WBGene00009731 - symbol:exo-1 species:6239 "Caenorhabd... 129 0.00020 2
SGD|S000005559 - symbol:EXO1 "5'-3' exonuclease and flap-... 121 0.00078 1
>UNIPROTKB|Q64MA3 [details] [associations]
symbol:RAD "Flap endonuclease GEN-like 1" species:39947
"Oryza sativa Japonica Group" [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009555
"pollen development" evidence=IMP] [GO:0048256 "flap endonuclease
activity" evidence=IDA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0009555 GO:GO:0046872
GO:GO:0006281 GO:GO:0003690 GO:GO:0003697 EMBL:CM000142
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GO:GO:0048256 EMBL:AB158320 EMBL:AB194139 EMBL:AP006859
ProteinModelPortal:Q64MA3 EnsemblPlants:LOC_Os09g35000.1
KEGG:dosa:Os09t0521900-01 Gramene:Q64MA3 OMA:LCAQLNS Uniprot:Q64MA3
Length = 629
Score = 1398 (497.2 bits), Expect = 5.3e-160, Sum P(2) = 5.3e-160
Identities = 274/498 (55%), Positives = 355/498 (71%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS--VPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+W+V H AI+ S PHLR FF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAE-----EGILVER 112
RT++LF+K GAFPVFVVDG PSPLKSQ R ARF+R S +D + LP E + ++ R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALVQPR 120
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
N F + V++CVELLE GMPVL+AKGE EALCAQLN++G+VDACIT+DSDAFLFGAK V
Sbjct: 121 NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTV 180
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+K +R N KEPFECY ++DIE+GLGLKRK ++AM+LL+G+DHDL+GV G G +TAL+FVQ
Sbjct: 181 IKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
Query: 233 NFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAH 292
F ED +L L++IG G P + ++ S S +S+P +S HCS CGHPG K+ H
Sbjct: 241 LFDEDNVLAKLYEIGKGVYPFIGVSAPNIDDLPSPSTKSLPRARSPHCSHCGHPGNKKNH 300
Query: 293 FKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFP 352
K C +C+ D+ E C++KP GF C C C+K R K Q+++ENW IKVC +IA ETNFP
Sbjct: 301 IKDGCNFCLVDSLENCVEKPAGFICECPSCDKARDLKVQRRNENWQIKVCKRIAAETNFP 360
Query: 353 NDEIVTMYLCENNGTFTATDG-PSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST 411
N+EI+ +YL ++N +G P ++W P E+LVDFL + Q W+P+YIRQ+MLPMLST
Sbjct: 361 NEEIINLYLNDDN--LDNENGVPLLTWNKPDMEILVDFLSFKQNWEPAYIRQRMLPMLST 418
Query: 412 IYLREMATNPVQT-LLCGQYEFDSIRRVKIRYGHQSYVVKWKKAA-SAISGVKYTAPVDS 469
IYLREMA++ ++ LL QY+F SI+R+KIRYGH Y+VKWK+ S IS P
Sbjct: 419 IYLREMASSQSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWKRVTRSMISN----DPPSK 474
Query: 470 DLHLEEFMEYPQIHVDGD 487
LE + ++ +DGD
Sbjct: 475 QTELEGKNDKVEV-LDGD 491
Score = 182 (69.1 bits), Expect = 5.3e-160, Sum P(2) = 5.3e-160
Identities = 57/129 (44%), Positives = 79/129 (61%)
Query: 478 EYPQI-HVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGK 536
+ PQ+ D DC FLLTDE+++LV++AFP + F QE +R LK ++ + +S+ +
Sbjct: 516 DVPQVLDDDKDC-FLLTDEDIELVNAAFPDEAQRF-QEEQR--LKEAKSIARKSKLNVAG 571
Query: 537 LESPKS---KGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSK 593
E+PK GVQLSI EFYRS K S + SG D ++ S+ VD +SK NL K
Sbjct: 572 FETPKGPRPSGVQLSIKEFYRSKKGLSGD-SGKDGSRKSS-DVD-LSK--------NLPK 620
Query: 594 SARRRLLFN 602
S RRRLLF+
Sbjct: 621 SVRRRLLFD 629
>MGI|MGI:2443149 [details] [associations]
symbol:Gen1 "Gen homolog 1, endonuclease (Drosophila)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:2443149 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:P39748
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654
HOGENOM:HOG000060137 HOVERGEN:HBG096402 OMA:FFRISYL
OrthoDB:EOG4T1HKR EMBL:AK030995 EMBL:AK031077 EMBL:AK158255
EMBL:BC090653 EMBL:BC138157 EMBL:BC138158 IPI:IPI00624763
IPI:IPI00880889 RefSeq:NP_796305.3 UniGene:Mm.215295
ProteinModelPortal:Q8BMI4 STRING:Q8BMI4 PhosphoSite:Q8BMI4
PRIDE:Q8BMI4 Ensembl:ENSMUST00000166117 GeneID:209334
KEGG:mmu:209334 UCSC:uc007nav.1 UCSC:uc007naw.1 InParanoid:B2RR04
ChiTaRS:GEN1 NextBio:372631 Bgee:Q8BMI4 CleanEx:MM_GEN1
Genevestigator:Q8BMI4 Uniprot:Q8BMI4
Length = 908
Score = 457 (165.9 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
Identities = 118/346 (34%), Positives = 180/346 (52%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L L K +AVDLS W+ + +T +KK +V KPHLR FF
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQT-VKKMIGTVKKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R I+ + VFV++G P LK+ +++ ++ S +++ R+ F
Sbjct: 59 R-ISYLTQMNVKLVFVMEGEPPMLKADV-ISKRTQTRYGPSGKSRSQK---TGRSH-FKS 112
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 179 NTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
NTK+P +CY IS I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q F
Sbjct: 173 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 232
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSC 297
+L ++ W E+ +S P K HCS C HPG+ + H + C
Sbjct: 233 SLLQRFNQ---------W-----IEDPCYSVPQSAPK-KVVHCSVCSHPGSPKDHERNGC 277
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCS 343
C +D C + C C + + N K CS
Sbjct: 278 ILCKSDKY--CEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACS 321
Score = 123 (48.4 bits), Expect = 0.00066, P = 0.00066
Identities = 58/246 (23%), Positives = 95/246 (38%)
Query: 210 IGNDHD-LNGVQGI-GLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSH 267
+G D D L G+ + G D + V +++ L +L + Q + + E+
Sbjct: 191 LGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQSLLQRFN--QWIEDPCYS 248
Query: 268 SDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRK 327
+S P K HCS C HPG+ + H + C C +D C + C C +
Sbjct: 249 VPQSAPK-KVVHCSVCSHPGSPKDHERNGCILCKSDKY--CEPHDYDYLCPCEWHQTDHN 305
Query: 328 EKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLV 387
+ N K CS E FP E++ +L N P I++ P +
Sbjct: 306 RHLSEIENNIKKKACS---CE-GFPFHEVIQEFLLNKNKMLK----P-ITYQRPDLLLFQ 356
Query: 388 DFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSY 447
F V W Y +K+L +L T Y +M Q + I + ++R G
Sbjct: 357 RFTVQKMEWPSHYACEKLLVLL-TRY--DMIERKHGRKTSNQLQPIRIVKPRVRNGVHCL 413
Query: 448 VVKWKK 453
++W+K
Sbjct: 414 EIEWEK 419
Score = 63 (27.2 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
Identities = 41/169 (24%), Positives = 78/169 (46%)
Query: 379 GSPMTEMLVDFLVY-HQPWQP-SYIRQKMLPMLS-TIYLREMATN-PVQTLLCGQYEFDS 434
G P E++ +FL+ ++ +P +Y R +L T+ E ++ + LL +D
Sbjct: 324 GFPFHEVIQEFLLNKNKMLKPITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDM 383
Query: 435 IRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLH-LEEFMEYPQIHV--DGDCW- 489
I R ++G +K ++ + ++ P V + +H LE E P+ +V DGD
Sbjct: 384 IER---KHG--------RKTSNQLQPIRIVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGK 432
Query: 490 -FLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKL 537
LLT E L +A+P V + + + E K ++ S++++ L
Sbjct: 433 LSLLTMEEASLFEAAYPDAVAVY--QKQLSETKGRKQKSMKNKPKGSHL 479
>UNIPROTKB|Q17RS7 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K15338 EMBL:AK131387
EMBL:AC093731 EMBL:BC117204 EMBL:BC117206 IPI:IPI00295818
RefSeq:NP_001123481.1 RefSeq:NP_872431.3 UniGene:Hs.467793
ProteinModelPortal:Q17RS7 SMR:Q17RS7 STRING:Q17RS7
PhosphoSite:Q17RS7 DMDM:290457644 PRIDE:Q17RS7 DNASU:348654
Ensembl:ENST00000317402 Ensembl:ENST00000381254 GeneID:348654
KEGG:hsa:348654 UCSC:uc002rct.2 CTD:348654 GeneCards:GC02P017935
H-InvDB:HIX0001847 HGNC:HGNC:26881 MIM:612449 neXtProt:NX_Q17RS7
PharmGKB:PA162389359 HOGENOM:HOG000060137 HOVERGEN:HBG096402
InParanoid:Q17RS7 OMA:FFRISYL OrthoDB:EOG4T1HKR PhylomeDB:Q17RS7
GenomeRNAi:348654 NextBio:99407 ArrayExpress:Q17RS7 Bgee:Q17RS7
CleanEx:HS_GEN1 Genevestigator:Q17RS7 Uniprot:Q17RS7
Length = 908
Score = 448 (162.8 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 112/339 (33%), Positives = 182/339 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L L K +AVDLS W+ + +T +KK SV KPHLR FF
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQT-VKKMMGSVMKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R I+ + VFV++G P LK+ +++ +S +S +++ R+ F
Sbjct: 59 R-ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQSRYGSSGKSWSQK---TGRSH-FKS 112
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 179 NTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
NTK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSC 297
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 233 SLLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGC 278
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHEN 336
C +D C + C C ++ +++ + EN
Sbjct: 279 RLCKSDKY--CEPHDYEYCCPCEW-HRTEHDRQLSEVEN 314
Score = 132 (51.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 55/248 (22%), Positives = 106/248 (42%)
Query: 210 IGNDHD-LNGVQGI-GLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSH 267
+G D D L G+ + G D + V +++ L ++ + + Q + + E + +
Sbjct: 191 LGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQSLLQRFN--RWNETSCNS 248
Query: 268 SDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRK 327
S + + K +HCS C HPG+ + H + C C +D C +P ++ C C +R
Sbjct: 249 SPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKY--C--EPHDYEYCCP-CEWHRT 303
Query: 328 EKEQK--KHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEM 385
E +++ + EN + K FP E++ +L + I + P +
Sbjct: 304 EHDRQLSEVEN---NIKKKACCCEGFPFHEVIQEFLLNKDKLVKV-----IRYQRPDLLL 355
Query: 386 LVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQ 445
F + W Y +K+L +L T Y +M + + Q + I + +IR G
Sbjct: 356 FQRFTLEKMEWPNHYACEKLLVLL-THY--DMIERKLGSRNSNQLQPIRIVKTRIRNGVH 412
Query: 446 SYVVKWKK 453
+ ++W+K
Sbjct: 413 CFEIEWEK 420
Score = 55 (24.4 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 491 LLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 436 LLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
Score = 52 (23.4 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 522 RKRTSSLRSEESNGKLESPKSKGVQLSITE-FYRSAKVQSQEKSG-ADLAKDSNCQVDRI 579
+K SS E + KL SPK + + TE RS + E+S D K S +
Sbjct: 825 QKHNSSHFKESGHNKLSSPK---IHIKETEQCVRSYETAENEESCFPDSTKSSLSSLQCH 881
Query: 580 SKENRRVSSPNLSKSARRRL 599
KEN + + R+RL
Sbjct: 882 KKENNSGTCLDSPLPLRQRL 901
>UNIPROTKB|E1B8D0 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:DAAA02031803
IPI:IPI00842908 PRIDE:E1B8D0 Ensembl:ENSBTAT00000043571
Uniprot:E1B8D0
Length = 914
Score = 452 (164.2 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 115/341 (33%), Positives = 182/341 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L L K +AVDLS W+ + +T +KK +V KPHLR FF
Sbjct: 1 MGVND-LWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQT-VKKMIGTVMKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R I+ VFV++G P LK+ +++ R+ + P + F
Sbjct: 59 R-ISYLTLMDVKLVFVMEGEPPHLKADV-ISK--RNQVRYG--PSGKTWSQKTGRSHFKS 112
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 179 NTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
NTK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQ 232
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMI--KSSHCSFCGHPGTKRAHFKF 295
+L + W + KS +S+ S P++ K +HCS C HPG+ + H +
Sbjct: 233 SLLQ--RRFNQ------WSE-KSC-----YSN-SQPVLVNKLAHCSVCSHPGSSKDHERN 277
Query: 296 SCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHEN 336
C+ C D C ++C C ++ E++ EN
Sbjct: 278 GCKLCQTDRY--CEPHDYEYRCPCEW-HRTEHERQLNAVEN 315
Score = 50 (22.7 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 493 TDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSKGVQLSIT 550
T E L +A+P+ V + ++ + ++++ ++S+ N LES + VQ +T
Sbjct: 438 TIEEESLFEAAYPEIVAIYQKQKSENKGTKQKSMKIKSK-GNSLLESDEMMKVQSHMT 494
Score = 44 (20.5 bits), Expect = 9.7e-44, Sum P(2) = 9.7e-44
Identities = 14/80 (17%), Positives = 37/80 (46%)
Query: 524 RTSSLRSEESNGKLESPKSKGVQLSITEFYRSA----KVQSQEKSGADLAKDSNCQVDRI 579
+TS++R+ N L+ + G+Q++ + + ++ S E+S K + ++
Sbjct: 761 KTSNVRTGPPNATLDRSRKAGIQIARKTVRKKSVCLDRLSSDEESVPKFGK-AKSTTQKM 819
Query: 580 SKENRRVSSPNLSKSARRRL 599
+ +++ S K+ +L
Sbjct: 820 KQSSQKHSPTQFKKNDPNKL 839
Score = 37 (18.1 bits), Expect = 5.3e-43, Sum P(2) = 5.3e-43
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 529 RSEESNGKLESPKSKGVQLSITEFYRSAKVQS 560
+SE K +S K K S+ E KVQS
Sbjct: 460 KSENKGTKQKSMKIKSKGNSLLESDEMMKVQS 491
>RGD|1559792 [details] [associations]
symbol:Gen1 "Gen endonuclease homolog 1 (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 RGD:1559792 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:CH473947
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K15338 CTD:348654 OrthoDB:EOG4T1HKR IPI:IPI00360342
RefSeq:NP_001100187.1 UniGene:Rn.162850 Ensembl:ENSRNOT00000006470
GeneID:298884 KEGG:rno:298884 NextBio:644458 Uniprot:D3ZVS5
Length = 908
Score = 450 (163.5 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 118/346 (34%), Positives = 175/346 (50%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L L K +AVDLS W+ + +T +KK +V KPHLR FF
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQT-VKKMIGTVMKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R I+ + VFV++G P LK+ R + + G R+ F
Sbjct: 59 R-ISYLTQMNVKLVFVMEGEPPKLKADVMNKRTQTRYGPSGKSRSQKTG----RSH-FKS 112
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 179 NTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
NTK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 173 NTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQ 232
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSC 297
+L ++ W TEE +S K HCS C HPG+ + H + C
Sbjct: 233 SLLQRFNQ---------W-----TEEP-GYSVPQSAAKKVVHCSVCSHPGSPKDHERNGC 277
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCS 343
C +D C + C C + + + N K CS
Sbjct: 278 TLCKSDRY--CEPHDYEYLCPCEWHQTDHNRQLNEIENNIKKKACS 321
Score = 133 (51.9 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 70/280 (25%), Positives = 111/280 (39%)
Query: 210 IGNDHD-LNGVQGI-GLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSH 267
+G D D L G+ + G D + V +++ L +L + + Q + + TEE +
Sbjct: 191 LGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQSLLQRFN--QWTEEP-GY 247
Query: 268 SDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRK 327
S K HCS C HPG+ + H + C C +D C + C C +
Sbjct: 248 SVPQSAAKKVVHCSVCSHPGSPKDHERNGCTLCKSDRY--CEPHDYEYLCPCEWHQTDHN 305
Query: 328 EKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLV 387
+ + N K CS E FP E++ +L N P I + P +
Sbjct: 306 RQLNEIENNIKKKACS---CE-GFPFHEVIQEFLSNKNKLLK----P-IRYQRPDLLLFQ 356
Query: 388 DFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSY 447
F V W Y +K+L +L T Y +M + Q + I + +IR G
Sbjct: 357 RFTVQKMEWPSHYACEKLLVLL-TRY--DMIERKLGRKTSNQLQPIRIVKPRIRNGVCCL 413
Query: 448 VVKWKKAASAISGVKYTAPVDSDL-HLEE--FME--YPQI 482
++W+K V+ T P DL +EE E YP++
Sbjct: 414 EIEWEKPEHY--SVEDTQPGGLDLLTIEEASLFEAAYPEV 451
Score = 49 (22.3 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 491 LLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSKGV 545
LLT E L +A+P+ V + + ++ E K K+ +++ + L P+S V
Sbjct: 435 LLTIEEASLFEAAYPEVVA--IYQKQQSETKGKKQKNIKIKPKGSHL--PESDDV 485
Score = 40 (19.1 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 24/99 (24%), Positives = 39/99 (39%)
Query: 506 KKVD-HFLQENERRELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQ--- 561
K +D HFLQEN R TS S S G+ + V+++
Sbjct: 729 KVLDSHFLQENFR-----VNTSLPYSFNDEAVKTSSLQVGLPTAAVPHNPKVDVKTKNLV 783
Query: 562 EKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLL 600
+KS L +DS+ + + + ++P L S+ L
Sbjct: 784 KKSSVCLKRDSSDEENAAVSWKAKYTAPKLKHSSHNHSL 822
>UNIPROTKB|F1SCS5 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 OMA:FFRISYL EMBL:CU468500
Ensembl:ENSSSCT00000009424 Uniprot:F1SCS5
Length = 914
Score = 448 (162.8 bits), Expect = 7.9e-44, Sum P(2) = 7.9e-44
Identities = 114/324 (35%), Positives = 172/324 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L+ L K +AVDLS W+ + +T +KK +V KPHLR FF
Sbjct: 1 MGVND-LWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQT-VKKMIGTVMKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R I+ VFV++G P LK+ + + R+ I P + F
Sbjct: 59 R-ISCLTLMDVKLVFVMEGEPPKLKADV-INK--RNQIRYG--PSGKTWSHKTGRSHFKS 112
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC+++LE G+P ++A GEAEA+CA LN+ G VD C+T D DAFL+GA+ V +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 179 NTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
NTK+P +CY +S I+ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 173 NTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIKTLKGQ 232
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMI--KSSHCSFCGHPGTKRAHFKF 295
+L ++ W EE S+S S P++ K +HCS C HPG+ R H +
Sbjct: 233 SLLQRFNQ---------W-----IEE--SYSSNSQPLVVNKLAHCSVCSHPGSPRDHERH 276
Query: 296 SCEYCINDNNEGCLKKPDGFKCNC 319
C+ C D C + C C
Sbjct: 277 GCKLCKTDRF--CEPHDYEYSCPC 298
Score = 153 (58.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 66/282 (23%), Positives = 120/282 (42%)
Query: 209 LIGNDHD-LNGVQGI-GLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVS 266
++G D D L G+ + G D + V +++ L ++ + + Q + + EE S
Sbjct: 190 ILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIKTLKGQSLLQRFN--QWIEE--S 245
Query: 267 HSDESMPMI--KSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNK 324
+S S P++ K +HCS C HPG+ R H + C+ C D C +P ++ +C C
Sbjct: 246 YSSNSQPLVVNKLAHCSVCSHPGSPRDHERHGCKLCKTDRF--C--EPHDYEYSCP-CEW 300
Query: 325 NRKE--KEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPM 382
++ E ++ EN + K FP E++ +L + I + P
Sbjct: 301 HQTECGRQLNAVEN---SIKKKACSCEGFPFHEVIQEFLLSKDKLVK-----EIRYRRPD 352
Query: 383 TEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRY 442
+ F + W Y +K+L +L T Y +M + Q + I + +IR
Sbjct: 353 LLLFQRFTLEKMEWPNHYACEKLLVLL-THY--DMTERKLGRRNSNQLQPIRIVKTRIRN 409
Query: 443 GHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFME--YPQI 482
G + + ++W+K + +Y V + E E YP+I
Sbjct: 410 GVRCFEIEWEKPEHYTTEDEYGELVLQTIEEESLFEAAYPEI 451
Score = 49 (22.3 bits), Expect = 7.9e-44, Sum P(2) = 7.9e-44
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 491 LLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSKGV 545
L T E L +A+P+ V + + ++ E+K K+ S++ + L P+S +
Sbjct: 435 LQTIEEESLFEAAYPEIVA--IYQKQKSEIKGKKQKSMKVKSKGNSL--PESDDI 485
>UNIPROTKB|E2QU72 [details] [associations]
symbol:GEN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 KO:K15338 CTD:348654 OMA:FFRISYL
EMBL:AAEX03010748 RefSeq:XP_540093.2 Ensembl:ENSCAFT00000006025
GeneID:482980 KEGG:cfa:482980 NextBio:20857444 Uniprot:E2QU72
Length = 908
Score = 447 (162.4 bits), Expect = 3.3e-43, Sum P(2) = 3.3e-43
Identities = 116/346 (33%), Positives = 177/346 (51%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L L K +AVDLS W+ + +T +KK +V KPHLR FF
Sbjct: 1 MGVND-LWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQT-VKKMIGTVMKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R I+ VFV++G P LK+ ++R R+ I P + F
Sbjct: 59 R-ISYLTLMDVKLVFVMEGEPPKLKADV-ISR--RNQIRYG--PSGKTWSQKAGRSHFKS 112
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC+++LE G+P ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 179 NTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
NTK+P +CY S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 173 NTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSC 297
+L + W +EE+ S + + + K +HCS C HPG+ + H + C
Sbjct: 233 SLLQRFTQ---------W-----SEESCS-DPQPLAIKKLAHCSVCSHPGSPKDHVRNGC 277
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCS 343
+ C N C + C C + + N K CS
Sbjct: 278 KLC--KTNRYCEPHDYEYCCPCDWHRTQHERQLIAVENNIKKKACS 321
Score = 44 (20.5 bits), Expect = 3.3e-43, Sum P(2) = 3.3e-43
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 491 LLTDENMKLVHSAFPKKVDHFLQEN-ERR-ELKRKRTSSLRSEESNGKLESPKSKGVQLS 548
L T E L +A+P+ V + ++N E + + K+++ ++S+E N + ES Q S
Sbjct: 434 LQTIEEKSLFEAAYPEIVAVYQKQNLELKGKGKKQKCMKIKSKE-NRQPESDNMMSFQ-S 491
Query: 549 ITEFYRSAKVQSQEKSGADL 568
+ +V S++ S L
Sbjct: 492 QMNLNPTCEVFSKQNSKLSL 511
Score = 43 (20.2 bits), Expect = 4.2e-43, Sum P(2) = 4.2e-43
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 519 ELKRKRTSSLRSEESNGKL--ESPKSKGV-QLSITEFYRSAKVQSQEKSGADLAKDSNCQ 575
E++ ++ E+ +G+L ++ + K + + + E + Q+ E G K C
Sbjct: 414 EIEWEKPEHYAIEDQHGELVLQTIEEKSLFEAAYPEIVAVYQKQNLELKGK--GKKQKCM 471
Query: 576 VDRISKENRRVSSPNL 591
+ SKENR+ S N+
Sbjct: 472 KIK-SKENRQPESDNM 486
>UNIPROTKB|Q29FC1 [details] [associations]
symbol:Gen "Flap endonuclease GEN" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0000737 "DNA catabolic
process, endonucleolytic" evidence=ISS] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=ISS] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=ISS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0004520 GO:GO:0008311 GO:GO:0000737 GO:GO:0000738
EMBL:CH379067 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 KO:K15338 OMA:FFRTCYL OrthoDB:EOG4QFTV7 GO:GO:0035312
RefSeq:XP_001354281.1 ProteinModelPortal:Q29FC1 GeneID:4814122
KEGG:dpo:Dpse_GA10481 FlyBase:FBgn0070538 InParanoid:Q29FC1
Uniprot:Q29FC1
Length = 754
Score = 314 (115.6 bits), Expect = 4.5e-34, Sum P(2) = 4.5e-34
Identities = 96/321 (29%), Positives = 148/321 (46%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+A + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRSTIDASTLPVAEEGILVERNQT-F 116
L + PVFV++G LK Q R +R + V++ +T F
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAKVDKGRTRF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+++C LL G+ ++ GEAEA A LN G VD I+ DSD F +GA V +
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 177 RPNTKEP-------FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+T+ + Y + +I + + + +I M+LL G D+ +G+ GIG D L+
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLK 238
Query: 230 FVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTK 289
+ E EIL+ L W E ++ M + S CS CGH G
Sbjct: 239 LFNKYKESEILDRLRN---------W-----RAETDKYNALEMRVDDKSICSNCGHIGRT 284
Query: 290 RAHFKFSCEYCINDNNEGCLK 310
++H K C C GC K
Sbjct: 285 QSHTKSGCSVC--RTKRGCDK 303
Score = 133 (51.9 bits), Expect = 4.5e-34, Sum P(2) = 4.5e-34
Identities = 54/228 (23%), Positives = 106/228 (46%)
Query: 316 KCNCSLCNKNRK-EKEQKKHENWWIK----VCSKIALETNFPNDEIVTMYLCENNGTFTA 370
K CS+C R +K K + IK + K L FPN+EI++ +L E
Sbjct: 289 KSGCSVCRTKRGCDKTLWKEQRLSIKAELILRRKALLAPEFPNEEIISEFLSEP----PT 344
Query: 371 TDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA-TNPVQTLLCGQ 429
++ W P + + + W Y QK P+L+ +++ A TN + + Q
Sbjct: 345 IPNLNLGWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQAARTNAIGRVELVQ 404
Query: 430 YEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEF-MEYPQIHVDGDC 488
D I++ ++ G S ++W+ + + G+ P D + EF +E+P+ ++ +
Sbjct: 405 -PVDIIKKRTVK-GVASLELRWQDPSGSFQGL---IP---DKQISEFELEHPK-GIE-EL 454
Query: 489 WFLLTDENMKLVHSAFPKKVDHFLQENER---RELKRKRTSSLRSEES 533
++ T E + ++ +A+P V FL+ E+ + ++K+T L + E+
Sbjct: 455 YY--TVEPLDMLEAAYPDLVASFLKSKEKPPKKATRKKKTDPLSAIEN 500
>FB|FBgn0263831 [details] [associations]
symbol:Gen "XPG-like endonuclease" species:7227 "Drosophila
melanogaster" [GO:0006284 "base-excision repair" evidence=ISS]
[GO:0048256 "flap endonuclease activity" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0000014 "single-stranded
DNA specific endodeoxyribonuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0004519 "endonuclease
activity" evidence=ISS] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=IDA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IDA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0000737 "DNA
catabolic process, endonucleolytic" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005634 EMBL:AE014296 GO:GO:0046872 GO:GO:0003677
GO:GO:0006302 GO:GO:0004520 GO:GO:0008311 GO:GO:0000737
GO:GO:0000738 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0008310 HSSP:P39748 GeneTree:ENSGT00640000091478 KO:K15338
EMBL:AB103508 EMBL:AF160893 EMBL:AY128475 RefSeq:NP_647943.2
UniGene:Dm.847 ProteinModelPortal:Q9VRJ0 SMR:Q9VRJ0 PRIDE:Q9VRJ0
EnsemblMetazoa:FBtr0077176 GeneID:38594 KEGG:dme:Dmel_CG10670
CTD:38594 FlyBase:FBgn0263831 InParanoid:Q9VRJ0 OMA:FFRTCYL
OrthoDB:EOG4QFTV7 PhylomeDB:Q9VRJ0 GenomeRNAi:38594 NextBio:809430
Bgee:Q9VRJ0 GO:GO:0035312 Uniprot:Q9VRJ0
Length = 726
Score = 312 (114.9 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 95/320 (29%), Positives = 154/320 (48%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQ--ARLARFYRSTIDASTLPVAEEGILVERNQ---T 115
L + PVFV++G LKSQ A+ + P + + ++
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGDKGRSR 118
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA V +
Sbjct: 119 FNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRN 178
Query: 176 IRPNTKEP-------FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+T+ + Y + +I + + ++ +I M+LL G D+ +G+ GIG D L
Sbjct: 179 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVL 238
Query: 229 QFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGT 288
+ + E EIL+ + G+ +Y + E V D+S+ CS CGH G
Sbjct: 239 KLFNKYKETEILDRMRS-WRGETDKY----NALEIRVD--DKSI-------CSNCGHIGK 284
Query: 289 KRAHFKFSCEYCINDNNEGC 308
++H K C C ++GC
Sbjct: 285 TQSHTKSGCSVC--RTHKGC 302
Score = 99 (39.9 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 41/169 (24%), Positives = 69/169 (40%)
Query: 375 SISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDS 434
+++W P + + + W Y QK P+L+ +++ + + +L +E
Sbjct: 350 NLNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQ---SKQEKILIQPHEIIK 406
Query: 435 IRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTD 494
R VK G S ++W + G+ P D ++ EY H G T
Sbjct: 407 KRTVK---GVPSLELRWHDPSGIFKGL---IP---D---KQIAEYEAEHPKGIEELYYTI 454
Query: 495 ENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSK 543
E + ++ +A+P V FL+ E+ K R SEE N K P SK
Sbjct: 455 EPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEEN-KENEPNSK 502
Score = 95 (38.5 bits), Expect = 6.2e-30, Sum P(2) = 6.2e-30
Identities = 52/247 (21%), Positives = 100/247 (40%)
Query: 300 CINDNNEGCLKKPDGFKCNCSLC--NKNRKE---KEQKKHENWWIKVCSKIALETNFPND 354
C N + G K K CS+C +K E KEQ+ + + K L +FPN+
Sbjct: 276 CSNCGHIG--KTQSHTKSGCSVCRTHKGCDESLWKEQRLSIKSELTLRRKALLSPDFPNE 333
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
EI+ +L E + +++W P + + + W Y QK P+L+ +
Sbjct: 334 EIIAEFLSEPD----TIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQV 389
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLE 474
++ + + +L +E R VK G S ++W + G+ + ++ E
Sbjct: 390 QQ---SKQEKILIQPHEIIKKRTVK---GVPSLELRWHDPSGIFKGLIPDKQI-AEYEAE 442
Query: 475 EFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+++ + +L LV +AF K + + ++ ++K+T+S + N
Sbjct: 443 HPKGIEELYYTIEPLDMLETAYPDLV-AAFLKSKE----KPAKKTTRKKKTASEEENKEN 497
Query: 535 GKLESPK 541
PK
Sbjct: 498 EPNSKPK 504
Score = 38 (18.4 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 557 KVQSQEKSGADLAKD-SNCQVDRISKENRRVSSPNLSKSARRRLLFN 602
K QS KSG + + C + + KE R L+ RR+ L +
Sbjct: 284 KTQSHTKSGCSVCRTHKGCD-ESLWKEQRLSIKSELT--LRRKALLS 327
>UNIPROTKB|E1BWF2 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00571137
Ensembl:ENSGALT00000026572 Uniprot:E1BWF2
Length = 538
Score = 348 (127.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 81/251 (32%), Positives = 136/251 (54%)
Query: 72 VFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFG 131
VFV++G LK+ +++ AS + G+ +F ++EC++LLE G
Sbjct: 6 VFVMEGEAPKLKADT-MSKRNEIRYGASN----KHGVARTGRSSFKSILKECLQLLECLG 60
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP-FECYCIS 190
+P ++A GEAEA+CA LN++G+VD CIT D D FL+GA+ V + N+KEP +CY +S
Sbjct: 61 VPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMNSKEPHLDCYTMS 120
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGD 250
I+ LG R+ LI +++L+G D+ G+ G+G + AL+ ++ N+L +
Sbjct: 121 SIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRGQ---NLLQRF---- 173
Query: 251 IPQYWGDIKSTEEAVSHSDESMPMI--KSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGC 308
+ W +E H D + P++ + HCS C HPG+ + H + C++C ++ C
Sbjct: 174 --EQW------KEQSEH-DNNPPLVVKRVVHCSECHHPGSYKEHERGGCKFC--ESTRYC 222
Query: 309 LKKPDGFKCNC 319
+ C C
Sbjct: 223 KPSDSKYCCPC 233
Score = 41 (19.5 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 491 LLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
++T E L +A+P V + E K+++ R +E
Sbjct: 371 VVTIEEESLFQAAYPDVVSLYQMEKSEALAKKQKNKKNRPKE 412
>UNIPROTKB|E1C3E4 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00484 SMART:SM00485 GO:GO:0006281
GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00818388
Ensembl:ENSGALT00000036876 OMA:HVESYCM Uniprot:E1C3E4
Length = 246
Score = 320 (117.7 bits), Expect = 4.6e-28, P = 4.6e-28
Identities = 86/253 (33%), Positives = 138/253 (54%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDL--SYWIV--QHETAIKKNSVP-----KP 51
MGV W +L+P + L L+ K +AVDL +Y + ++ T +K+++ P K
Sbjct: 1 MGVNN-LWQILEPVRQPVSLSSLKGKTLAVDLRFTYMYICYKNRTCLKRSAYPLLPMTKI 59
Query: 52 HLRLT--FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
L L FFR + F G VFV++G LK+ +++ AS + G+
Sbjct: 60 QLNLENLFFR-YSFFTSMGIKLVFVMEGEAPKLKADT-MSKRNEIRYGASN----KHGVA 113
Query: 110 VERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA 169
+F ++EC++LLE G+P ++A GEAEA+CA LN++G+VD CIT D D FL+GA
Sbjct: 114 RTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGA 173
Query: 170 KCVVKCIRPNTK----------EP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
+ V + N+K EP +CY +S I+ LG R+ LI +++L+G D+ G
Sbjct: 174 QTVYRNFAMNSKSSQKCTWKLKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKG 233
Query: 219 VQGIGLDTALQFV 231
+ G+G + AL+ +
Sbjct: 234 IPGVGKEQALKLI 246
>UNIPROTKB|E1C986 [details] [associations]
symbol:Gga.42587 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
GeneTree:ENSGT00640000091478 EMBL:AADN02018598 IPI:IPI00680396
Ensembl:ENSGALT00000031592 Uniprot:E1C986
Length = 190
Score = 316 (116.3 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 72/190 (37%), Positives = 112/190 (58%)
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
V KPHLR FFR + F G VFV++G LK+ +++ AS + G
Sbjct: 5 VTKPHLRNLFFR-YSFFTSMGIKLVFVMEGEAPKLKADT-MSKRNEIRYGASN----KHG 58
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
+ +F ++EC++LLE G+P ++A GEAEA+CA LN++G+VD CIT D D FL+
Sbjct: 59 VARTGRSSFKSILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLY 118
Query: 168 GAKCVVKCIRPNTK----EP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
GA+ V + N+K EP +CY +S I+ LG R+ LI +++L+G D+ G+ G+
Sbjct: 119 GAQTVYRNFAMNSKLSFKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGV 178
Query: 223 GLDTALQFVQ 232
G + AL+ ++
Sbjct: 179 GKEQALKLIE 188
>ASPGD|ASPL0000027656 [details] [associations]
symbol:AN5216 species:162425 "Emericella nidulans"
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 Pfam:PF02809 GO:GO:0005634
EMBL:BN001305 GO:GO:0003697 GO:GO:0090305 GO:GO:0004519
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACD01000089
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10846 HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6
RefSeq:XP_662820.1 ProteinModelPortal:Q5B2L4 STRING:Q5B2L4
EnsemblFungi:CADANIAT00003214 GeneID:2871507 KEGG:ani:AN5216.2
Uniprot:Q5B2L4
Length = 1141
Score = 232 (86.7 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 54/119 (45%), Positives = 72/119 (60%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K + N
Sbjct: 809 ITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF-N 867
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ ECY +D+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS E
Sbjct: 868 QSKYVECYLTADLEKEYALHRRKLISFAHLLGSDYT-EGIPGIGPVTALEILTEFSSLE 925
Score = 136 (52.9 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 37/88 (42%), Positives = 48/88 (54%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQG-LWTIVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPVLKRQ 86
Score = 65 (27.9 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 33/136 (24%), Positives = 52/136 (38%)
Query: 340 KVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPS 399
K +KI L FP+ + YL E D WG P L +FL+ W
Sbjct: 954 KQATKIFLPPTFPDARVDAAYL-EPEAD---RDPSPFQWGVPDLHGLRNFLMATIGWSQE 1009
Query: 400 YIRQKMLPMLSTIYLREM--ATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASA 457
+ ++P++ I RE + + + G + ++R G QS + K A
Sbjct: 1010 RTDEVLVPVIRDINQREQEGTQSNITSFFSGPQGAGAFAP-RVRSGGQSRMEK------A 1062
Query: 458 ISGVKYTAPVDSDLHL 473
S ++ A D D L
Sbjct: 1063 FSRLRREAGADQDAEL 1078
Score = 39 (18.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 520 LKRKRTSSLRSEESNGKLE-----SPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNC 574
LKR+ T + R + G+ E + K VQL T SAK +S+ + + D+
Sbjct: 83 LKRQ-TIANRKKRREGRREDAVQTASKLLAVQLQRTAEQESAKRRSRRQENEEDVPDNPV 141
Query: 575 QVD 577
V+
Sbjct: 142 YVE 144
>POMBASE|SPBC3E7.08c [details] [associations]
symbol:rad13 "DNA repair nuclease Rad13" species:4896
"Schizosaccharomyces pombe" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=TAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:1901255 "nucleotide-excision repair involved in interstrand
cross-link repair" evidence=IMP] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 PomBase:SPBC3E7.08c GO:GO:0005634 GO:GO:0046872
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003697 GO:GO:0004519
InterPro:IPR003903 PROSITE:PS50330 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GO:GO:1901255 EMBL:X66795 PIR:S30301 PIR:T40382
RefSeq:NP_596095.1 ProteinModelPortal:P28706 STRING:P28706
EnsemblFungi:SPBC3E7.08c.1 GeneID:2541051 KEGG:spo:SPBC3E7.08c
HOGENOM:HOG000214817 OMA:VYKNMFN OrthoDB:EOG4XPTQ6 NextBio:20802165
Uniprot:P28706
Length = 1112
Score = 180 (68.4 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 42/118 (35%), Positives = 67/118 (56%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC ELL LFG+P + A EAEA C++L VD +T DSD FLFG V + + N
Sbjct: 757 IKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNMF-N 815
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
+ E Y + D++ + + LI ++ L+G+D+ + G+ +G AL+ + F D
Sbjct: 816 QNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTM-GLSRVGPVLALEILHEFPGD 872
Score = 150 (57.9 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 46/126 (36%), Positives = 64/126 (50%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G WD+L+P R L+ L +KR+A+D S WI Q A++ N + H+ + F
Sbjct: 1 MGVSG-LWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA-------RLARFYRSTIDAS---TLPVAEEG 107
FR I FG PVFV DG LK Q RL R +T+ A+ L + +
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENATVTANKLLALQMRHQA 118
Query: 108 ILVERN 113
+L+E N
Sbjct: 119 MLLEEN 124
Score = 75 (31.5 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
Identities = 36/142 (25%), Positives = 57/142 (40%)
Query: 323 NKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGP--SISWGS 380
+KN KK N K+ KI L + FPN + YL A D S WG
Sbjct: 891 SKNDVNTPVKKRIN---KLVGKIILPSEFPNPLVDEAYL------HPAVDDSKQSFQWGI 941
Query: 381 PMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKI 440
P + L FL+ W + +LP++ ++ ++ Q+ L +E +
Sbjct: 942 PDLDELRQFLMATVGWSKQRTNEVLLPVIQDMHKKQFVGT--QSNLTQFFEGGNTNVYAP 999
Query: 441 RYGHQSYVVKWKKAASAISGVK 462
R +Y K K+ +A+S K
Sbjct: 1000 RV---AYHFKSKRLENALSSFK 1018
Score = 41 (19.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 24/112 (21%), Positives = 47/112 (41%)
Query: 490 FLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSKGVQLSI 549
+LL+ EN K + +D L E + + E S K + S V+ +
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIPTDFQKEASPNKGAAALSSKVEPEV 687
Query: 550 TEFYRSAKVQSQEKSGADLAKDSNCQVDR-ISKENRRVSSPNLSKSA-RRRL 599
E + +E+ +A++ + DR +S+ N+R + ++ A +RL
Sbjct: 688 VEKLLD---EEEEEMIIRMAEEEK-EYDRFVSELNQRHETEEWNQEAFEKRL 735
>TAIR|locus:2099463 [details] [associations]
symbol:AT3G48900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006281 "DNA repair" evidence=IEA;ISS] InterPro:IPR000953
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00298 SMART:SM00484
SMART:SM00485 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 EMBL:AL132967 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 InterPro:IPR016197 SUPFAM:SSF54160
EMBL:AL132963 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HSSP:P39748 EMBL:AY075628 IPI:IPI00533647 IPI:IPI00537877
PIR:T46139 PIR:T49286 RefSeq:NP_001118795.1 RefSeq:NP_190459.2
UniGene:At.50684 ProteinModelPortal:Q9M2Z3 SMR:Q9M2Z3 PRIDE:Q9M2Z3
EnsemblPlants:AT3G48900.2 GeneID:824051 KEGG:ath:AT3G48900
TAIR:At3g48900 HOGENOM:HOG000064651 InParanoid:Q9SMT0 KO:K15338
OMA:SLCDGCF PhylomeDB:Q9M2Z3 ProtClustDB:CLSN2697057
Genevestigator:Q9M2Z3 Uniprot:Q9M2Z3
Length = 600
Score = 297 (109.6 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 85/244 (34%), Positives = 121/244 (49%)
Query: 3 VGGKF-WDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT-FFRT 60
+G K+ WD+L+P + LD L++KRV VDLS W+V+ K K + L FF
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 61 INLFAKFGAFPVFVVDGTPSPLKS---QARL-ARFYRSTIDASTLPVAEEGILVERNQTF 116
+ + V DG +K + RL ARF D P E + F
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARF--EIADDGVEPSKETSLKRNMGSEF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
++E + G+ L EAEA CA LNSE DAC + DSD FLFGAK V + I
Sbjct: 119 SCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREI 178
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY + DI+ LGL R LIA++LL+G+D+ GV+G+ + A + V++ +
Sbjct: 179 CLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRGLRQEKACELVRSIGD 237
Query: 237 DEIL 240
+ IL
Sbjct: 238 NVIL 241
Score = 41 (19.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 22/95 (23%), Positives = 42/95 (44%)
Query: 499 LVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKV 558
LV A P+K+ F ++ ++ K K + S K S ++L + ++ V
Sbjct: 417 LVERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDLNSTSLV 476
Query: 559 QSQEKSGADLAKDSNCQVDRISKEN---RRVSSPN 590
+S + A+ N Q + SK++ R + SP+
Sbjct: 477 S---RSTLEEAEQENEQQN--SKKHDYLRLIDSPD 506
>CGD|CAL0003758 [details] [associations]
symbol:RAD2 species:5476 "Candida albicans" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IEA;ISA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA;ISA] [GO:0006295 "nucleotide-excision
repair, DNA incision, 3'-to lesion" evidence=IEA;ISA] [GO:0034644
"cellular response to UV" evidence=IMP] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
CGD:CAL0003758 GO:GO:0003697 GO:GO:0034644 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709963.1 RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2
STRING:Q59TL2 GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 186 (70.5 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 48/128 (37%), Positives = 72/128 (56%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T + VQE LL+ FG+P + A EAEA CA+L G VD +T DSD FLFG
Sbjct: 724 EVTETMINDVQE---LLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGD 780
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ K + + K+ E Y D+ + L + LI ++LL+G+D+ G++GIG A++
Sbjct: 781 KIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYT-EGIKGIGPVQAMEI 838
Query: 231 VQNFSEDE 238
+ F E
Sbjct: 839 LAEFGNLE 846
Score = 137 (53.3 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W ++ P AR L+ L K++A+D S WI Q A++ NS+P H+ + F
Sbjct: 1 MGVHS-LWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHI-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG P+FV DG LK Q
Sbjct: 59 FRRICKLLYFGILPIFVFDGGVPALKKQ 86
Score = 72 (30.4 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 320 SLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWG 379
S+ +K K QK + IK K+ L +FP+ + Y+ +D WG
Sbjct: 858 SVADKTELTKLQKSLLDR-IKK-GKLYLPDSFPDKVVEQAYMSPE----VDSDKTEFQWG 911
Query: 380 SPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREM 417
P + + FL+Y+ W + + + M+P++ + +++
Sbjct: 912 VPDLDQIRSFLMYNLLWTQTEVDEVMVPLVQDMNKKKL 949
Score = 45 (20.9 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 537 LESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKE 582
+ K +G Q +I+EF+ +QS+++ +L K +++ K+
Sbjct: 944 MNKKKLEGRQSTISEFFPQEYIQSRKE--LNLGKRLKTAANKLKKQ 987
Score = 37 (18.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 534 NGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSK 593
N K + K G + +Y + ++ QE+S + + + D S E +S ++
Sbjct: 582 NQKNQEEKDAG----LVPWYEAKEILEQEQSDEEEQEQEQEKPDNDSDEIEEISKEQVNI 637
Query: 594 S 594
S
Sbjct: 638 S 638
>UNIPROTKB|Q59TL2 [details] [associations]
symbol:RAD2 "Putative uncharacterized protein RAD13"
species:237561 "Candida albicans SC5314" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=ISA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=ISA] [GO:0034644 "cellular
response to UV" evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003758 GO:GO:0003697
GO:GO:0034644 GO:GO:0000014 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0006295 GO:GO:0000112 KO:K10846
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709963.1
RefSeq:XP_713000.1 ProteinModelPortal:Q59TL2 STRING:Q59TL2
GeneID:3645374 GeneID:3645402 KEGG:cal:CaO19.1324
KEGG:cal:CaO19.8904 Uniprot:Q59TL2
Length = 990
Score = 186 (70.5 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 48/128 (37%), Positives = 72/128 (56%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T + VQE LL+ FG+P + A EAEA CA+L G VD +T DSD FLFG
Sbjct: 724 EVTETMINDVQE---LLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGD 780
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ K + + K+ E Y D+ + L + LI ++LL+G+D+ G++GIG A++
Sbjct: 781 KIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYT-EGIKGIGPVQAMEI 838
Query: 231 VQNFSEDE 238
+ F E
Sbjct: 839 LAEFGNLE 846
Score = 137 (53.3 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W ++ P AR L+ L K++A+D S WI Q A++ NS+P H+ + F
Sbjct: 1 MGVHS-LWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHI-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG P+FV DG LK Q
Sbjct: 59 FRRICKLLYFGILPIFVFDGGVPALKKQ 86
Score = 72 (30.4 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 320 SLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWG 379
S+ +K K QK + IK K+ L +FP+ + Y+ +D WG
Sbjct: 858 SVADKTELTKLQKSLLDR-IKK-GKLYLPDSFPDKVVEQAYMSPE----VDSDKTEFQWG 911
Query: 380 SPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREM 417
P + + FL+Y+ W + + + M+P++ + +++
Sbjct: 912 VPDLDQIRSFLMYNLLWTQTEVDEVMVPLVQDMNKKKL 949
Score = 45 (20.9 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 537 LESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKE 582
+ K +G Q +I+EF+ +QS+++ +L K +++ K+
Sbjct: 944 MNKKKLEGRQSTISEFFPQEYIQSRKE--LNLGKRLKTAANKLKKQ 987
Score = 37 (18.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 534 NGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSK 593
N K + K G + +Y + ++ QE+S + + + D S E +S ++
Sbjct: 582 NQKNQEEKDAG----LVPWYEAKEILEQEQSDEEEQEQEQEKPDNDSDEIEEISKEQVNI 637
Query: 594 S 594
S
Sbjct: 638 S 638
>SGD|S000003490 [details] [associations]
symbol:RAD2 "Single-stranded DNA endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=IDA;IMP] [GO:0000112 "nucleotide-excision repair
factor 3 complex" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000003490 EMBL:BK006941 GO:GO:0046872
GO:GO:0006366 GO:GO:0003697 EMBL:Y07777 GO:GO:0000014
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
GO:GO:0000112 KO:K10846 TIGRFAMs:TIGR00600 HOGENOM:HOG000214817
OMA:VYKNMFN OrthoDB:EOG4XPTQ6 EMBL:M10275 EMBL:Z73043 EMBL:AY692857
PIR:A29839 RefSeq:NP_011774.1 PDB:2LOX PDBsum:2LOX
ProteinModelPortal:P07276 SMR:P07276 DIP:DIP-5869N IntAct:P07276
MINT:MINT-683829 STRING:P07276 PaxDb:P07276 PeptideAtlas:P07276
PRIDE:P07276 EnsemblFungi:YGR258C GeneID:853174 KEGG:sce:YGR258C
CYGD:YGR258c GeneTree:ENSGT00640000091542 NextBio:973302
Genevestigator:P07276 GermOnline:YGR258C Uniprot:P07276
Length = 1031
Score = 188 (71.2 bits), Expect = 4.6e-22, Sum P(4) = 4.6e-22
Identities = 45/124 (36%), Positives = 72/124 (58%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
+ ++ + ++E ELL FG+P + A EAEA CA+L VD IT DSD FLFG
Sbjct: 763 DSDEVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGT 822
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ K + + K E Y I LGL RK++I ++ L+G+D+ NG++G+G ++++
Sbjct: 823 KIYKNMF-HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYT-NGLKGMGPVSSIEV 880
Query: 231 VQNF 234
+ F
Sbjct: 881 IAEF 884
Score = 144 (55.7 bits), Expect = 4.6e-22, Sum P(4) = 4.6e-22
Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHIT-GF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK +
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRE 86
Score = 63 (27.2 bits), Expect = 4.6e-22, Sum P(4) = 4.6e-22
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 323 NKNRKEKEQKKHENWWIK-VCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSP 381
+K ++E E K ++ K V ++I L+ +FP+ + Y+ T P + WG P
Sbjct: 900 DKRKQETENKFEKDLRKKLVNNEIILDDDFPSVMVYDAYMRPEVDHDTT---PFV-WGVP 955
Query: 382 MTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
+ML F+ W + ++P++ + R+
Sbjct: 956 DLDMLRSFMKTQLGWPHEKSDEILIPLIRDVNKRK 990
Score = 46 (21.3 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 529 RSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRR 585
R E + K +++ E + +SQ A+ DS +V+ I+KE+R+
Sbjct: 646 RESEKESSNDENKDDDLEVLSEELFEDVPTKSQISKEAE-DNDSR-KVESINKEHRK 700
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 491 LLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESP---------K 541
+LT+ L + K+ F NE L +K T S S+E+ K +SP
Sbjct: 538 ILTEGEQNL--NFISHKIPQFDFNNENSLLFQKNTESNVSQEAT-KEKSPIPEMPSWFSS 594
Query: 542 SKGVQL----SITEFYRSAKVQSQEKSGAD 567
+ QL + T F V+++++SGA+
Sbjct: 595 TASQQLYNPYNTTNFVEDKNVRNEQESGAE 624
Score = 42 (19.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 520 LKRKRTSSLRSEESNGKLESPKSKGVQL 547
LKR+ T R E GK ES KS +L
Sbjct: 83 LKRE-TIRQRKERRQGKRESAKSTARKL 109
Score = 41 (19.5 bits), Expect = 5.3e-07, Sum P(4) = 5.3e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 213 DHDLNGVQGIGLD--TALQFVQNFSEDEILNILHKI 246
D+D V+ I + L F +FSEDE NI+ +
Sbjct: 685 DNDSRKVESINKEHRKPLIFDYDFSEDEEDNIVENM 720
Score = 37 (18.1 bits), Expect = 4.6e-22, Sum P(4) = 4.6e-22
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 541 KSKGVQLSITEFYRSAKVQSQEK 563
K KG Q I EF+ + +K
Sbjct: 990 KKKGKQKRINEFFPREYISGDKK 1012
>UNIPROTKB|F1P266 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0010225
"response to UV-C" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0043066 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542
EMBL:AADN02029216 IPI:IPI00655481 Ensembl:ENSGALT00000027237
ArrayExpress:F1P266 Uniprot:F1P266
Length = 1111
Score = 181 (68.8 bits), Expect = 3.9e-21, Sum P(3) = 3.9e-21
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K K
Sbjct: 719 ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNK 778
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 779 Y-VEYYQYIDFQNQLGLDRSKLINLAYLLGSDYT-EGIPNVGFVTAMEILNEF 829
Score = 112 (44.5 bits), Expect = 3.9e-21, Sum P(3) = 3.9e-21
Identities = 40/121 (33%), Positives = 54/121 (44%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ N++ HL LT
Sbjct: 1 MGVQG-LWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R +R + E +L +TFL
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 90 (36.7 bits), Expect = 3.9e-21, Sum P(3) = 3.9e-21
Identities = 34/148 (22%), Positives = 62/148 (41%)
Query: 324 KNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMT 383
KN+K + + K+ ++ L + FPN + YL T G S WG P
Sbjct: 849 KNKKIRPNPRDTKVKKKL-RELQLSSGFPNPAVAEAYL---KPVVDETRG-SFIWGKPDV 903
Query: 384 EMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYG 443
E + +F H W + + +LP++ + L++ Q+E I+ ++R
Sbjct: 904 EQIREFCKDHFGWTRTKTDEILLPVIKQLNLQQTQLRIDSFFRLAQHEKQVIKSQRLRRA 963
Query: 444 HQSYVVKWKKAASAISGVKYTAPVDSDL 471
K K+ A IS + TA ++ ++
Sbjct: 964 VSCLKRKEKEEADEIS--EATAVMEKEM 989
Score = 38 (18.4 bits), Expect = 8.3e-16, Sum P(3) = 8.3e-16
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 546 QLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKE 582
QL I F+R A+ + Q L + +C + R KE
Sbjct: 938 QLRIDSFFRLAQHEKQVIKSQRLRRAVSC-LKRKEKE 973
>UNIPROTKB|E1BZY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:AADN02029216 IPI:IPI00923817
Ensembl:ENSGALT00000036537 ArrayExpress:E1BZY2 Uniprot:E1BZY2
Length = 1007
Score = 181 (68.8 bits), Expect = 9.3e-20, Sum P(3) = 9.3e-20
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K K
Sbjct: 788 ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFFSRNK 847
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 848 Y-VEYYQYIDFQNQLGLDRSKLINLAYLLGSDYT-EGIPNVGFVTAMEILNEF 898
Score = 112 (44.5 bits), Expect = 9.3e-20, Sum P(3) = 9.3e-20
Identities = 40/121 (33%), Positives = 54/121 (44%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ N++ HL LT
Sbjct: 1 MGVQG-LWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R +R + E +L +TFL
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 75 (31.5 bits), Expect = 9.3e-20, Sum P(3) = 9.3e-20
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 324 KNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMT 383
KN+K + + K+ ++ L + FPN + YL T G S WG P
Sbjct: 918 KNKKIRPNPRDTKVKKKL-RELQLSSGFPNPAVAEAYL---KPVVDETRG-SFIWGKPDV 972
Query: 384 EMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREM 417
E + ++ H W + + +LP++ + L+++
Sbjct: 973 EQIREYPFNHFGWTRTKTDEILLPVIKQLNLQQV 1006
>UNIPROTKB|Q3B7N6 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=ISS]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0010225 "response to UV-C"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006295 "nucleotide-excision repair, DNA incision, 3'-to
lesion" evidence=ISS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0000405 "bubble DNA
binding" evidence=ISS] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0043066 GO:GO:0042803 GO:GO:0003690 GO:GO:0003697
GO:GO:0004520 GO:GO:0047485 GO:GO:0010225 GO:GO:0000405
GO:GO:0006283 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0006295 CTD:2073 HOVERGEN:HBG051501 KO:K10846
OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
HOGENOM:HOG000131367 GeneTree:ENSGT00640000091542 EMBL:DAAA02034800
EMBL:BC107528 IPI:IPI00691871 RefSeq:NP_001030353.1
UniGene:Bt.39059 STRING:Q3B7N6 Ensembl:ENSBTAT00000046365
GeneID:509602 KEGG:bta:509602 InParanoid:Q3B7N6 NextBio:20869041
Uniprot:Q3B7N6
Length = 1201
Score = 175 (66.7 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K N
Sbjct: 787 ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF-NKN 845
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 846 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEF 897
Score = 124 (48.7 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 41/121 (33%), Positives = 56/121 (46%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R ++ + AS E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAASDSKTTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 63 (27.2 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 27/140 (19%), Positives = 52/140 (37%)
Query: 340 KVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPS 399
K K+ L FPN + YL + G S WG P + + +F + W +
Sbjct: 932 KKLRKLQLTPGFPNPAVADAYL---KPVVDESKG-SFLWGKPDLDKIREFCQRYFGWNRT 987
Query: 400 YIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKK----AA 455
+ + P+L + + + Q E + +K + +++ +K AA
Sbjct: 988 KTDESLFPVLKQLNVHQTQLRIDSFFRLAQQEKQEAKGIKSQRLNRAVTCMLRKEREEAA 1047
Query: 456 SAISGVKYTAPVDSDLHLEE 475
S + +S+ L+E
Sbjct: 1048 SEVEAASVAMEKESEF-LDE 1066
Score = 51 (23.0 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 24/80 (30%), Positives = 35/80 (43%)
Query: 521 KRKRTSSLRS-EESNGKL-ESPKSKGVQLSI---TEFYRSAKVQSQEKSGADLAKDSNCQ 575
KRKR S + ES G L E+ S+ + S E++ + VQ + GA A+ S Q
Sbjct: 1087 KRKRLSDSKGGNESGGFLGEAYLSQSSEASSGEDAEYFPAMGVQRAKAPGASRARSSAAQ 1146
Query: 576 VDRISKENRRVSSPNLSKSA 595
+RR S S+
Sbjct: 1147 -SAAQPASRRDGGTTTSSSS 1165
Score = 47 (21.6 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 546 QLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSS 588
QL I F+R A+ + QE G + + + KE +S
Sbjct: 1006 QLRIDSFFRLAQQEKQEAKGIKSQRLNRAVTCMLRKEREEAAS 1048
Score = 44 (20.5 bits), Expect = 7.1e-17, Sum P(3) = 7.1e-17
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 518 RELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKD-SNCQV 576
+ L R T LR E E + +EF AK ++Q++ A+ K+ S+ +
Sbjct: 1029 QRLNRAVTCMLRKEREEAASEVEAASVAMEKESEFLDEAKGKTQKRGTANRWKEPSSPKR 1088
Query: 577 DRIS 580
R+S
Sbjct: 1089 KRLS 1092
Score = 41 (19.5 bits), Expect = 5.5e-06, Sum P(4) = 5.5e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 324 KNRKEKEQKKHENWWIKVCSKIALETNF 351
KN E+E +K W ++ K AL+ F
Sbjct: 154 KNSSEEEDEKE--WQERMSQKQALQEEF 179
>UNIPROTKB|P28715 [details] [associations]
symbol:ERCC5 "DNA repair protein complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IDA] [GO:0006295 "nucleotide-excision repair, DNA
incision, 3'-to lesion" evidence=IMP;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0009411 "response to UV" evidence=IDA;IMP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IDA]
[GO:0000405 "bubble DNA binding" evidence=IDA] [GO:0010225
"response to UV-C" evidence=IMP] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009650 "UV
protection" evidence=IGI] [GO:0000718 "nucleotide-excision repair,
DNA damage removal" evidence=TAS] [GO:0004519 "endonuclease
activity" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0008340 GO:GO:0043066
GO:GO:0005654 GO:GO:0046872 GO:GO:0003690 GO:GO:0003697
GO:GO:0035264 GO:GO:0004520 GO:GO:0010225 EMBL:AL157769
GO:GO:0000405 GO:GO:0009650 GO:GO:0000718 GO:GO:0006283
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0006295
Orphanet:1466 Orphanet:220295 EMBL:X69978 EMBL:D16305 EMBL:L20046
EMBL:AF255442 EMBL:AF255431 EMBL:AF255433 EMBL:AF255434
EMBL:AF255435 EMBL:AF255436 EMBL:AF255437 EMBL:AF255438
EMBL:AF255439 EMBL:AF255440 EMBL:AF255441 EMBL:AF462447
EMBL:AF550128 EMBL:BC031522 EMBL:X71341 EMBL:X71342 IPI:IPI00477535
IPI:IPI00848102 PIR:I58009 PIR:S35993 RefSeq:NP_000114.2
UniGene:Hs.258429 ProteinModelPortal:P28715 SMR:P28715 DIP:DIP-750N
IntAct:P28715 MINT:MINT-192239 STRING:P28715 PhosphoSite:P28715
DMDM:205371791 PaxDb:P28715 PRIDE:P28715 DNASU:2073
Ensembl:ENST00000355739 Ensembl:ENST00000375954 GeneID:2073
KEGG:hsa:2073 UCSC:uc001vpw.3 CTD:2073 GeneCards:GC13P103459
HGNC:HGNC:3437 MIM:133530 MIM:278780 neXtProt:NX_P28715
Orphanet:276267 PharmGKB:PA27851 HOVERGEN:HBG051501
InParanoid:P28715 KO:K10846 OrthoDB:EOG4CNQQZ BindingDB:P28715
ChEMBL:CHEMBL4736 GenomeRNAi:2073 NextBio:8433 ArrayExpress:P28715
Bgee:P28715 CleanEx:HS_ERCC5 Genevestigator:P28715
GermOnline:ENSG00000134899 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
Uniprot:P28715
Length = 1186
Score = 172 (65.6 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 44/113 (38%), Positives = 62/113 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V + N
Sbjct: 771 ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFF-NKN 829
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 830 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEF 881
Score = 129 (50.5 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 42/121 (34%), Positives = 57/121 (47%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ PHL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q + R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 67 (28.6 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 31/152 (20%), Positives = 57/152 (37%)
Query: 324 KNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMT 383
KN K + H+ K + L FPN + YL + G S WG P
Sbjct: 901 KNPKIRPNP-HDTKVKKKLRTLQLTPGFPNPAVAEAYL---KPVVDDSKG-SFLWGKPDL 955
Query: 384 EMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYG 443
+ + +F + W + + + P+L + ++ Q E + +R+K +
Sbjct: 956 DKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRL 1015
Query: 444 HQSYVVKWKK----AASAISGVKYTAPVDSDL 471
+++ +K AAS I V + +L
Sbjct: 1016 NRAVTCMLRKEKEAAASEIEAVSVAMEKEFEL 1047
Score = 39 (18.8 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 516 ERRELKRKRTSSLRSEESNGKL--ESPKSKGVQLSITEFYRSAKVQS-QEKSGADLAKDS 572
E LKRKR S + + + G E+ S+ S +E S+ + + Q ++ A K S
Sbjct: 1066 ESSSLKRKRLSDSKGKNTCGGFLGETCLSESSDGSSSEDAESSSLMNVQRRTAAKEPKTS 1125
Query: 573 NCQVDRISKE 582
KE
Sbjct: 1126 ASDSQNSVKE 1135
>ZFIN|ZDB-GENE-050327-28 [details] [associations]
symbol:ercc5 "excision repair cross-complementing
rodent repair deficiency, complementation group 5 (xeroderma
pigmentosum, complementation group G (Cockayne syndrome))"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050327-28 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081 SUPFAM:SSF47807
PANTHER:PTHR11081:SF1 GeneTree:ENSGT00640000091542 EMBL:CU571081
EMBL:CU855897 IPI:IPI00997036 Ensembl:ENSDART00000144406
Bgee:F1QJS3 Uniprot:F1QJS3
Length = 1010
Score = 182 (69.1 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 45/114 (39%), Positives = 64/114 (56%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
QE ELL LFG+P + A EAEA CA L+ IT DSD +LFG + V + N
Sbjct: 660 QESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYRNFF-NQ 718
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y I D++ LGL R LI ++ L+G+D+ G+ G+G T ++ + F
Sbjct: 719 NKYVEHYQIVDMQNQLGLDRSKLINLAYLLGSDYT-EGIPGVGYVTGMEILNEF 771
Score = 109 (43.4 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 41/121 (33%), Positives = 52/121 (42%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + + L K +AVD+S W+ Q ++ N+V HL LT
Sbjct: 1 MGVHG-LWKLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDRDGNAVQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R R E +L QTFL
Sbjct: 59 FHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSEKLL----QTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 65 (27.9 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 20/102 (19%), Positives = 38/102 (37%)
Query: 340 KVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPS 399
K + + FPN + YL + +D S SWG P +++ +F W
Sbjct: 806 KKLRNLQIHPGFPNPAVAQAYL---QPSVDQSDA-SFSWGRPHLDLIKEFCQSRFGWSSR 861
Query: 400 YIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIR 441
+ + P+L + ++ Q + IR ++R
Sbjct: 862 KTEETLQPVLKQLQSQQTQLRIDSFFRLEQQDRQQIRSERLR 903
Score = 49 (22.3 bits), Expect = 6.9e-17, Sum P(3) = 6.9e-17
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 526 SSLRSEES-NGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENR 584
SS ++EE+ L+ +S+ QL I F+R + Q+ L + C + +E
Sbjct: 859 SSRKTEETLQPVLKQLQSQQTQLRIDSFFRLEQQDRQQIRSERLRRAVICMKRKEREEEE 918
Query: 585 RVSSPNLSKSAR 596
S + K R
Sbjct: 919 EDESVSAQKQGR 930
Score = 38 (18.4 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 21/111 (18%), Positives = 45/111 (40%)
Query: 487 DCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSKGVQ 546
D +F L ++ + + S ++ ++ ER E + S+ S + G+ E+ ++ G
Sbjct: 884 DSFFRLEQQDRQQIRSERLRRAVICMKRKEREE--EEEDESV-SAQKQGRSEADEAPG-- 938
Query: 547 LSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARR 597
+ + S+ Q+ + G AK + S E S ++ R
Sbjct: 939 -PLAGGFISSDPQTSTQGGG--AKQIRAESSSSSSEEEAESGKGVAMVTAR 986
>TAIR|locus:2091343 [details] [associations]
symbol:UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0010224 "response to UV-B" evidence=IGI]
[GO:0009408 "response to heat" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009408
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0010224
GO:GO:0006289 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0010213 KO:K10846 PANTHER:PTHR11081:SF1 OMA:VYKNMFN
EMBL:AB028616 EMBL:AF312711 IPI:IPI00535100 RefSeq:NP_566830.1
UniGene:At.5484 ProteinModelPortal:Q9ATY5 SMR:Q9ATY5 IntAct:Q9ATY5
STRING:Q9ATY5 PaxDb:Q9ATY5 PRIDE:Q9ATY5 EnsemblPlants:AT3G28030.1
GeneID:822427 KEGG:ath:AT3G28030 GeneFarm:4444 TAIR:At3g28030
HOGENOM:HOG000083663 InParanoid:Q9ATY5 PhylomeDB:Q9ATY5
ProtClustDB:CLSN2688857 Genevestigator:Q9ATY5 GermOnline:AT3G28030
Uniprot:Q9ATY5
Length = 1479
Score = 251 (93.4 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 63/168 (37%), Positives = 93/168 (55%)
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL--KCVQECVELLELF 130
F G P S+A + R +D + + +E +ERN + + EC ELL++F
Sbjct: 879 FEEKGVPVEF-SEANIEEEIR-VLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIF 936
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
G+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K E Y +
Sbjct: 937 GIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRKY-VETYFMK 995
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
DIE LGL R +I M++L+G+D+ G+ GIG+ A++ V F E++
Sbjct: 996 DIEKELGLSRDKIIRMAMLLGSDYT-EGISGIGIVNAIEVVTAFPEED 1042
Score = 137 (53.3 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 42/116 (36%), Positives = 59/116 (50%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L +KR+A+D S W+VQ A+ K + V HL + F
Sbjct: 1 MGVQG-LWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHL-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVER 112
FR I P+FV DG LK + +AR R +A T + E +L+ R
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIAR-RRQRENAQTKIRKTAEKLLLNR 113
Score = 60 (26.2 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 23/101 (22%), Positives = 38/101 (37%)
Query: 340 KVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPS 399
KV + FP++ +++ YL N +T+ SWG P +L W
Sbjct: 1105 KVSKNWHIPLTFPSEAVISAYL--NPQVDLSTE--KFSWGKPDLSVLRKLCWEKFNWNGK 1160
Query: 400 YIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKI 440
+ +LP+L RE ++ F IR +I
Sbjct: 1161 KTDELLLPVLKEYEKRETQLR-IEAFYSFNERFAKIRSKRI 1200
Score = 46 (21.3 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 509 DHFLQENERRELKRKRTSSLRSEESNGKLESP------KSKGVQLSITEFYRS-AKVQSQ 561
DH LQE R+ K+K + + +SP K+K +L R + Q +
Sbjct: 1217 DHTLQEGPRKRNKKKVAPHETEDNNTSDKDSPIANEKVKNKRKRLEKPSSSRGRGRAQKR 1276
Query: 562 EKSGADLAKD----SNCQVDRISKENRRV---SSP-NLSKSARRR 598
+ + KD S+ D +++ V + P NL KS R R
Sbjct: 1277 GRGRGRVQKDLLELSDGSSDDDDDDDKVVELEAKPANLQKSTRSR 1321
>UNIPROTKB|J9P9A3 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 EMBL:AAEX03013354
RefSeq:XP_003639860.1 Ensembl:ENSCAFT00000047499 GeneID:100855935
KEGG:cfa:100855935 Uniprot:J9P9A3
Length = 1185
Score = 175 (66.7 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K N
Sbjct: 772 ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF-NKN 830
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 831 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEF 882
Score = 121 (47.7 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 41/121 (33%), Positives = 56/121 (46%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ HL LT
Sbjct: 1 MGVHG-LWKLLECSGRQVSPETLEGKILAVDISIWLNQALRGVRDCHGNSIGNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R +R + A+ E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLAATDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 60 (26.2 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 20/89 (22%), Positives = 36/89 (40%)
Query: 324 KNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMT 383
KN+K + ++ K K+ L FPN + YL + G S WG P
Sbjct: 902 KNKKIRPNP-YDTKVKKKLRKLQLTPGFPNPAVADAYL---KPVVDDSRG-SFLWGKPDL 956
Query: 384 EMLVDFLVYHQPWQPSYIRQKMLPMLSTI 412
+ + +F + W + + + P+L +
Sbjct: 957 DKIREFCQRYFGWNRTKTDESLFPVLKQL 985
Score = 48 (22.0 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 383 TEMLVD--FLVYHQPWQPSY-IRQKMLPMLSTIYLR---EMATNPVQTL-LCGQYEFDSI 435
T++ +D F + Q Q + IR + L T LR E A + ++ + + + +F+
Sbjct: 990 TQLRIDSFFRLAQQERQDAKGIRSQRLNRAVTCMLRKEREAAASEIEAVSVAMENDFEFP 1049
Query: 436 RRVKIRYGHQSYVVKWKKAAS 456
+ K + +S V KWK+++S
Sbjct: 1050 DKAKGKTQKRSIVNKWKESSS 1070
Score = 43 (20.2 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 537 LESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSS 588
L+ ++ QL I F+R A+ + Q+ G + + + KE +S
Sbjct: 982 LKQLNAQQTQLRIDSFFRLAQQERQDAKGIRSQRLNRAVTCMLRKEREAAAS 1033
Score = 42 (19.8 bits), Expect = 3.3e-18, Sum P(4) = 3.3e-18
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 518 RELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNC-QV 576
+ L R T LR E E + EF AK ++Q++S + K+S+ +
Sbjct: 1014 QRLNRAVTCMLRKEREAAASEIEAVSVAMENDFEFPDKAKGKTQKRSIVNKWKESSSPKK 1073
Query: 577 DRIS--KENRR 585
R+S K+ RR
Sbjct: 1074 KRLSDSKQERR 1084
Score = 42 (19.8 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 407 PMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRY 442
P ++ YL+ + + + L G+ + D IR RY
Sbjct: 931 PAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRY 966
>MGI|MGI:103582 [details] [associations]
symbol:Ercc5 "excision repair cross-complementing rodent
repair deficiency, complementation group 5" species:10090 "Mus
musculus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=ISO;IMP]
[GO:0009650 "UV protection" evidence=ISO;IDA;IMP] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 MGI:MGI:103582
GO:GO:0005634 GO:GO:0008340 GO:GO:0046872 GO:GO:0003697
GO:GO:0090305 GO:GO:0035264 GO:GO:0004519 GO:GO:0006289
GO:GO:0009650 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
HOVERGEN:HBG051501 OrthoDB:EOG4CNQQZ PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 EMBL:D16306 EMBL:U40796 EMBL:U40795 EMBL:U39892
EMBL:U39893 EMBL:U39894 EMBL:U39896 EMBL:U40073 EMBL:U40431
EMBL:U40432 EMBL:U40668 EMBL:U40669 EMBL:U40670 EMBL:U40792
EMBL:U40793 EMBL:U40794 EMBL:AC123800 IPI:IPI00310463 PIR:A57650
UniGene:Mm.2213 ProteinModelPortal:P35689 STRING:P35689
PhosphoSite:P35689 PRIDE:P35689 HOGENOM:HOG000131367
InParanoid:P35689 Genevestigator:P35689 Uniprot:P35689
Length = 1170
Score = 179 (68.1 bits), Expect = 9.3e-18, Sum P(4) = 9.3e-18
Identities = 45/113 (39%), Positives = 63/113 (55%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K N
Sbjct: 770 ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFF-NKN 828
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 829 KFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEF 880
Score = 98 (39.6 bits), Expect = 9.3e-18, Sum P(4) = 9.3e-18
Identities = 38/121 (31%), Positives = 51/121 (42%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R R + E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 60 (26.2 bits), Expect = 9.3e-18, Sum P(4) = 9.3e-18
Identities = 19/86 (22%), Positives = 33/86 (38%)
Query: 324 KNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMT 383
+N K+ + ++ K K+ L FPN + YL + G S WG P
Sbjct: 899 QNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAVADAYL---RPVVDDSRG-SFLWGKPDV 954
Query: 384 EMLVDFLVYHQPWQPSYIRQKMLPML 409
+ + F + W + + P+L
Sbjct: 955 DKISTFCQRYFGWNRMKTDESLYPVL 980
Score = 56 (24.8 bits), Expect = 9.3e-18, Sum P(4) = 9.3e-18
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 546 QLSITEFYRSAKVQSQEKSGADLAKDS--NCQVDRISKENRRVSSPNLSK 593
QL I F+R A+ QEK A L K N V I ++ R +P L+K
Sbjct: 989 QLRIDSFFRLAQ---QEKQDAKLIKSHRLNRAVTCILRKEREEKAPELTK 1035
Score = 37 (18.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 407 PMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRY 442
P ++ YLR + + + L G+ + D I RY
Sbjct: 929 PAVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRY 964
>UNIPROTKB|P70040 [details] [associations]
symbol:fen1-a "Flap endonuclease 1-A" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:AF036327 EMBL:U64563 EMBL:AF065397 EMBL:BC169761 EMBL:BC169765
EMBL:BC124977 RefSeq:NP_001080960.1 UniGene:Xl.440
ProteinModelPortal:P70040 SMR:P70040 IntAct:P70040 PRIDE:P70040
GeneID:394303 KEGG:xla:394303 CTD:394303 Xenbase:XB-GENE-955523
Uniprot:P70040
Length = 382
Score = 238 (88.8 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 93/337 (27%), Positives = 154/337 (45%)
Query: 26 KRVAVDLSYWIVQHETAIKK--NSVPKP------HLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S I Q A+++ N++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGMFYRTIRM-VEHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P +KS R R L AEE VE + F K + +EC +LL L
Sbjct: 88 KPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ + + K P + +
Sbjct: 148 MGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ + DEI++ + +
Sbjct: 208 HLNRVIQDIGITHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKTIDEIIDNID-L 265
Query: 247 GNGDIPQYW--GDIKST--EEAVSHSD-ESMPMIKSSH---CSF-CGHPGTKRAHFKFSC 297
+P+ W + K E V +D + I+ +F CG +
Sbjct: 266 KKYPVPENWLHKEAKHLFLEPEVVDTDITELKWIEPDEEGLVAFMCGEKQFSEDRIRNGA 325
Query: 298 EYCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
+ + N +G + D FK S+ + RKE E K
Sbjct: 326 KK-LAKNRQGSTQGRLDDFFKVTGSVSSTKRKEAESK 361
>RGD|621821 [details] [associations]
symbol:Fen1 "flap structure-specific endonuclease 1"
species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
binding" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISO] [GO:0004527 "exonuclease activity"
evidence=ISO;NAS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0007613 "memory" evidence=IMP] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;ISO] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISO] [GO:0030145 "manganese ion
binding" evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA;ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:621821 GO:GO:0005739 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0007613 GO:GO:0006281
GO:GO:0030145 GO:GO:0004527 GO:GO:0004523 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:CH473953 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF
OrthoDB:EOG415GDQ EMBL:AF281018 EMBL:BC083630 IPI:IPI00199986
RefSeq:NP_445882.1 UniGene:Rn.16664 ProteinModelPortal:Q5XIP6
SMR:Q5XIP6 STRING:Q5XIP6 Ensembl:ENSRNOT00000027842 GeneID:84490
KEGG:rno:84490 InParanoid:Q9JHW7 NextBio:617038
Genevestigator:Q5XIP6 Uniprot:Q5XIP6
Length = 380
Score = 234 (87.4 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 94/337 (27%), Positives = 145/337 (43%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV++ DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYIFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ V+GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESVRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYWGDIKSTE---EAVSHSDESMPMIKSSH-----CSF-CGHPGTKRAHFKFSC 297
+P+ W ++ + E ES+ + S F CG +
Sbjct: 266 SKYPVPENWLHKEARQLFLEPEVLDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGV 325
Query: 298 EYCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
+ +N + +G + D FK SL + RKE E K
Sbjct: 326 KR-LNKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPK 361
>UNIPROTKB|P70054 [details] [associations]
symbol:fen1-b "Flap endonuclease 1-B" species:8355 "Xenopus
laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IPI] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0006260 GO:GO:0004527 GO:GO:0017108
PANTHER:PTHR11081 SUPFAM:SSF47807 HOVERGEN:HBG000844 KO:K04799
EMBL:U68141 EMBL:BC169390 EMBL:BC169394 RefSeq:NP_001080984.1
UniGene:Xl.530 ProteinModelPortal:P70054 SMR:P70054 GeneID:394311
KEGG:xla:394311 CTD:394311 Xenbase:XB-GENE-6254462 Uniprot:P70054
Length = 382
Score = 230 (86.0 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 74/249 (29%), Positives = 122/249 (48%)
Query: 26 KRVAVDLSYWIVQHETAIKK--NSVPKP------HLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S I Q A+++ N + HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNMLQNEEGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P +KS R R L AEE VE + F K + +EC +LL L
Sbjct: 88 KPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ + + K P + +
Sbjct: 148 MGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ + +EI++ + +
Sbjct: 208 HLNRVFQDIGINHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKTIEEIIDNID-L 265
Query: 247 GNGDIPQYW 255
IP+ W
Sbjct: 266 KKYPIPENW 274
Score = 160 (61.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 56/226 (24%), Positives = 106/226 (46%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
+EC +LL L G+P + A EAEA CA L G V A T D DA FG +++ + +
Sbjct: 139 EECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASE 198
Query: 181 --KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSED 237
K P + + ++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ + +
Sbjct: 199 AKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKTIE 257
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHS--DESMPMIKSSH------CSF-CGHPGT 288
EI++ + + IP+ W ++ + + D + +K + +F CG
Sbjct: 258 EIIDNID-LKKYPIPENWLHKEARQLFLEPEVIDADITELKWTEPDEEGLVAFMCGEKQF 316
Query: 289 KRAHFKFSCEYCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
+ + + N +G + D FK S+ + RKE E K
Sbjct: 317 SEDRIRNGAKK-LAKNRQGSTQGRLDDFFKVTGSISSTKRKEVESK 361
>MGI|MGI:102779 [details] [associations]
symbol:Fen1 "flap structure specific endonuclease 1"
species:10090 "Mus musculus" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007613 "memory" evidence=ISO]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0030145 "manganese ion
binding" evidence=IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048256 "flap endonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 MGI:MGI:102779 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 HOVERGEN:HBG000844 OrthoDB:EOG415GDQ ChiTaRS:FEN1
EMBL:L26320 IPI:IPI00990732 PIR:A53730 UniGene:Mm.2952
ProteinModelPortal:P39749 SMR:P39749 STRING:P39749 PaxDb:P39749
PRIDE:P39749 InParanoid:P39749 CleanEx:MM_FEN1
Genevestigator:P39749 GermOnline:ENSMUSG00000024742 Uniprot:P39749
Length = 378
Score = 226 (84.6 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 93/336 (27%), Positives = 147/336 (43%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--VPKPHLRLT-----FFRTINLFAKFGAFPVFVVDGT 78
++VA+D S I Q A+++ + T F+RTI + + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSLMGMFYRTIRM--ENGIKPVYVFDGK 86
Query: 79 PSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLELF 130
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 87 PPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLM 146
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECYC 188
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 147 GIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFH 206
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKIG 247
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 LSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGAKRAVDLIQKHKSIEEIVRRLDP-S 264
Query: 248 NGDIPQYWGDIKSTE-----EAVS-HSDE---SMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+P+ W ++ + E V S E S P + CG + +
Sbjct: 265 KYPVPENWLHKEAQQLFLEPEVVDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVK 324
Query: 299 YCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
++ + +G + D FK SL + RKE E K
Sbjct: 325 R-LSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPK 359
>ZFIN|ZDB-GENE-050417-81 [details] [associations]
symbol:zgc:110269 "zgc:110269" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-050417-81 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799 EMBL:CR377211
EMBL:BC092837 IPI:IPI00633624 RefSeq:NP_001017611.2
UniGene:Dr.13872 ProteinModelPortal:B0UXL7 STRING:B0UXL7
Ensembl:ENSDART00000005381 GeneID:550274 KEGG:dre:550274
InParanoid:Q568J1 OMA:ELVWTEP OrthoDB:EOG4FFD2P NextBio:20879536
ArrayExpress:B0UXL7 Bgee:B0UXL7 Uniprot:B0UXL7
Length = 350
Score = 205 (77.2 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 68/224 (30%), Positives = 110/224 (49%)
Query: 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLT-----FFRTINLFAKFG 68
F+ +R K + D S I+ +T+I N S HL+L+ F+RT+ F +
Sbjct: 12 FDAPASMRSKEIG-DYSGKIIALDTSIVVNQFRSALPGHLKLSPLAGLFYRTL-AFLEHD 69
Query: 69 AFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLE 128
PVFV+DG P P + +A L + +ST +S+ + T QEC+ LL
Sbjct: 70 IKPVFVLDGKP-PHQKRAVLEKRAQSTGWSSS----------QSPNTGSAFNQECLRLLH 118
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
L G+P +KA GEAEALCA L G V+A + D D FG +++ + Y
Sbjct: 119 LMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRDSEITEYS 178
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + L LK + + + +L+G D+ + + G+G AL+ ++
Sbjct: 179 LPKLLEALQLKYEEFVDLCILLGCDY-CDKIGGLGPSRALKLIK 221
Score = 61 (26.5 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 372 DGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKM 405
D P ++W P E LV FL +P + +R +M
Sbjct: 260 DDPVLAWSEPDEEGLVQFLCKEKPLKEERVRGRM 293
>UNIPROTKB|F1RKS3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0006284 GO:GO:0003677 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF EMBL:CU914654 RefSeq:XP_003122675.1
Ensembl:ENSSSCT00000030503 GeneID:100517749 KEGG:ssc:100517749
Uniprot:F1RKS3
Length = 380
Score = 222 (83.2 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 74/249 (29%), Positives = 113/249 (45%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
Score = 168 (64.2 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 60/225 (26%), Positives = 100/225 (44%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT- 180
EC LL L G+P L A EAEA CA L G V A T D D FG+ +++ + +
Sbjct: 140 ECKHLLSLMGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 181 -KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDE 238
K P + + +S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +E
Sbjct: 200 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEE 258
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHS--DESMPMIKSSHCS-------FCGHPGTK 289
I+ L +P+ W ++ + + D +K S + CG
Sbjct: 259 IVRRLDP-NKYPVPENWLHKEAQQLFLEPEVLDPEAVELKWSEPNEEELVKFMCGEKQFS 317
Query: 290 RAHFKFSCEYCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
+ ++ + +G + D FK SL + RKE E K
Sbjct: 318 EERIRSGVRR-LSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPK 361
Score = 38 (18.4 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 376 ISWGSPMTEMLVDFLVYHQPWQPSYIR 402
+ W P E LV F+ + + IR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIR 322
Score = 38 (18.4 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 335 ENWWIKVCSKIALETNFPNDEIVTMYLCENN 365
ENW K ++ LE + E V + E N
Sbjct: 272 ENWLHKEAQQLFLEPEVLDPEAVELKWSEPN 302
>GENEDB_PFALCIPARUM|PFB0265c [details] [associations]
symbol:PFB0265c "DNA repair endonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 213 (80.0 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 52/121 (42%), Positives = 72/121 (59%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL FG+P +++ EAEA C+ LN++ Y DA I+ DSD +F K V+K N K+ E
Sbjct: 1218 LLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNFF-NKKKTVE 1276
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y IE LGL ++ LI +SLL G D+ + GV GIG+ AL+ ++ F E L IL
Sbjct: 1277 VYEKKAIEEKLGLYQEELINISLLCGCDYTI-GVHGIGIVNALEIIKAFPNFEDLKILKD 1335
Query: 246 I 246
I
Sbjct: 1336 I 1336
Score = 71 (30.1 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
F+ + D + +D S I + IK +++ K HL F R L + P+F+ D
Sbjct: 52 FDNMSIFND--LWIDFSENI---SSEIKTDNIKKAHLYFFFLRICKLLY-YNIRPIFIFD 105
Query: 77 GTPSPLKSQARLAR 90
G P LK + R
Sbjct: 106 GNPPELKRKTIFQR 119
Score = 63 (27.2 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQ 38
MGV G W ++ P + KR+A+D+S W+ +
Sbjct: 1 MGVKG-LWSIVSPVGVRVNPEIFTGKRIAIDVSIWLYE 37
Score = 44 (20.5 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 25/109 (22%), Positives = 48/109 (44%)
Query: 233 NFSEDEILNILHKI---GNGDIPQYWGDIKS----TEEAVSHSDESMPMIKSSHCSFCGH 285
N SE+++LN+L+ I N ++ Y I+ E+ D+ + I++++
Sbjct: 1413 NISEEKVLNVLNPILQKYNVNVRTYQSKIEDFFPLLEKKRKTVDDLIDHIRANNKQ--KR 1470
Query: 286 PGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCN-KNRKEKEQKK 333
K H I+ N G +K + + +L + K RK ++KK
Sbjct: 1471 QKNKTVHLDSKISPLIDINPAGIIKSK---RMSSALDHIKRRKSSKKKK 1516
>UNIPROTKB|O96154 [details] [associations]
symbol:PFB0265c "DNA repair endonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0004519 EMBL:AE001362
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 HSSP:O29975 PIR:E71619
RefSeq:XP_001349570.1 ProteinModelPortal:O96154
EnsemblProtists:PFB0265c:mRNA GeneID:812652 KEGG:pfa:PFB0265c
EuPathDB:PlasmoDB:PF3D7_0206000 HOGENOM:HOG000284253
ProtClustDB:CLSZ2514755 Uniprot:O96154
Length = 1516
Score = 213 (80.0 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 52/121 (42%), Positives = 72/121 (59%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL FG+P +++ EAEA C+ LN++ Y DA I+ DSD +F K V+K N K+ E
Sbjct: 1218 LLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNFF-NKKKTVE 1276
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y IE LGL ++ LI +SLL G D+ + GV GIG+ AL+ ++ F E L IL
Sbjct: 1277 VYEKKAIEEKLGLYQEELINISLLCGCDYTI-GVHGIGIVNALEIIKAFPNFEDLKILKD 1335
Query: 246 I 246
I
Sbjct: 1336 I 1336
Score = 71 (30.1 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
F+ + D + +D S I + IK +++ K HL F R L + P+F+ D
Sbjct: 52 FDNMSIFND--LWIDFSENI---SSEIKTDNIKKAHLYFFFLRICKLLY-YNIRPIFIFD 105
Query: 77 GTPSPLKSQARLAR 90
G P LK + R
Sbjct: 106 GNPPELKRKTIFQR 119
Score = 63 (27.2 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQ 38
MGV G W ++ P + KR+A+D+S W+ +
Sbjct: 1 MGVKG-LWSIVSPVGVRVNPEIFTGKRIAIDVSIWLYE 37
Score = 44 (20.5 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 25/109 (22%), Positives = 48/109 (44%)
Query: 233 NFSEDEILNILHKI---GNGDIPQYWGDIKS----TEEAVSHSDESMPMIKSSHCSFCGH 285
N SE+++LN+L+ I N ++ Y I+ E+ D+ + I++++
Sbjct: 1413 NISEEKVLNVLNPILQKYNVNVRTYQSKIEDFFPLLEKKRKTVDDLIDHIRANNKQ--KR 1470
Query: 286 PGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCN-KNRKEKEQKK 333
K H I+ N G +K + + +L + K RK ++KK
Sbjct: 1471 QKNKTVHLDSKISPLIDINPAGIIKSK---RMSSALDHIKRRKSSKKKK 1516
>UNIPROTKB|J9PB88 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9615 "Canis lupus
familiaris" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003677
GO:GO:0090305 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:AAEX03011672 RefSeq:XP_533271.1 Ensembl:ENSCAFT00000049322
GeneID:476063 KEGG:cfa:476063 Uniprot:J9PB88
Length = 380
Score = 221 (82.9 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 74/249 (29%), Positives = 113/249 (45%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
++ I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLNRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
Score = 167 (63.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 62/225 (27%), Positives = 101/225 (44%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT- 180
EC LL L G+P L A EAEA CA L G V A T D D FG+ +++ + +
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 181 -KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDE 238
K P + + ++ I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +E
Sbjct: 200 KKLPIQEFHLNRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEE 258
Query: 239 ILNILHKIGNGDIPQYWGDIKSTE---EAVSHSDESMPMIKSSH-----CSF-CGHPGTK 289
I+ L +P+ W ++ + E ES+ + S F CG
Sbjct: 259 IVRRLDP-NKYPVPENWLHKEAQQLFLEPEVLDPESVELKWSEPNEEELVKFMCGEKQFS 317
Query: 290 RAHFKFSCEYCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
+ ++ + +G + D FK SL + RKE E K
Sbjct: 318 EERIRSGVRR-LSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPK 361
Score = 38 (18.4 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 376 ISWGSPMTEMLVDFLVYHQPWQPSYIR 402
+ W P E LV F+ + + IR
Sbjct: 296 LKWSEPNEEELVKFMCGEKQFSEERIR 322
Score = 37 (18.1 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 335 ENWWIKVCSKIALETNFPNDEIVTMYLCENN 365
ENW K ++ LE + E V + E N
Sbjct: 272 ENWLHKEAQQLFLEPEVLDPESVELKWSEPN 302
>UNIPROTKB|E1BC95 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0004520 "endodeoxyribonuclease activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000405 "bubble DNA binding" evidence=IEA]
InterPro:IPR001044 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0003697
GO:GO:0090305 GO:GO:0004519 GO:GO:0006289 PANTHER:PTHR11081
SUPFAM:SSF47807 PANTHER:PTHR11081:SF1 TIGRFAMs:TIGR00600
GeneTree:ENSGT00640000091542 EMBL:DAAA02034800 IPI:IPI00923951
Ensembl:ENSBTAT00000061115 OMA:MSNISIW ArrayExpress:E1BC95
Uniprot:E1BC95
Length = 1615
Score = 175 (66.7 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K N
Sbjct: 1201 ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF-NKN 1259
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1260 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEF 1311
Score = 85 (35.0 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 31 DLSYWIVQHETAIKK---NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQAR 87
++S W+ Q ++ NS+ HL LT F + F P+FV DG LK Q
Sbjct: 454 NISIWLNQALKGVRDRHGNSIENAHL-LTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTL 512
Query: 88 LARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R ++ + AS E +L +TFLK
Sbjct: 513 AKRRHKKDLAASDSKTTTEKLL----KTFLK 539
Score = 63 (27.2 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 27/140 (19%), Positives = 52/140 (37%)
Query: 340 KVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPS 399
K K+ L FPN + YL + G S WG P + + +F + W +
Sbjct: 1346 KKLRKLQLTPGFPNPAVADAYL---KPVVDESKG-SFLWGKPDLDKIREFCQRYFGWNRT 1401
Query: 400 YIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKK----AA 455
+ + P+L + + + Q E + +K + +++ +K AA
Sbjct: 1402 KTDESLFPVLKQLNVHQTQLRIDSFFRLAQQEKQEAKGIKSQRLNRAVTCMLRKEREEAA 1461
Query: 456 SAISGVKYTAPVDSDLHLEE 475
S + +S+ L+E
Sbjct: 1462 SEVEAASVAMEKESEF-LDE 1480
Score = 51 (23.0 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 24/80 (30%), Positives = 35/80 (43%)
Query: 521 KRKRTSSLRS-EESNGKL-ESPKSKGVQLSI---TEFYRSAKVQSQEKSGADLAKDSNCQ 575
KRKR S + ES G L E+ S+ + S E++ + VQ + GA A+ S Q
Sbjct: 1501 KRKRLSDSKGGNESGGFLGEAYLSQSSEASSGEDAEYFPAMGVQRAKAPGASRARSSAAQ 1560
Query: 576 VDRISKENRRVSSPNLSKSA 595
+RR S S+
Sbjct: 1561 -SAAQPASRRDGGTTTSSSS 1579
Score = 47 (21.6 bits), Expect = 9.4e-13, Sum P(3) = 9.4e-13
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 546 QLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSS 588
QL I F+R A+ + QE G + + + KE +S
Sbjct: 1420 QLRIDSFFRLAQQEKQEAKGIKSQRLNRAVTCMLRKEREEAAS 1462
Score = 44 (20.5 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 518 RELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKD-SNCQV 576
+ L R T LR E E + +EF AK ++Q++ A+ K+ S+ +
Sbjct: 1443 QRLNRAVTCMLRKEREEAASEVEAASVAMEKESEFLDEAKGKTQKRGTANRWKEPSSPKR 1502
Query: 577 DRIS 580
R+S
Sbjct: 1503 KRLS 1506
>UNIPROTKB|P39748 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0007613 "memory" evidence=IEA] [GO:0030145 "manganese ion
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0006281 "DNA
repair" evidence=NAS;TAS] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA;IMP] [GO:0003677 "DNA binding" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IDA] [GO:0004523 "ribonuclease H activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0008309 "double-stranded DNA specific
exodeoxyribonuclease activity" evidence=TAS] [GO:0003684 "damaged
DNA binding" evidence=TAS] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0009650 "UV protection" evidence=TAS] [GO:0000084
"S phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006284 "base-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AC004770 GO:GO:0005739 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0000287 GO:GO:0006284 GO:GO:0003684
GO:GO:0030145 GO:GO:0003690 GO:GO:0006302 GO:GO:0048015
GO:GO:0000084 GO:GO:0004523 GO:GO:0000722 GO:GO:0009650
GO:GO:0017108 Reactome:REACT_383 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0032201
CTD:2237 HOGENOM:HOG000193853 HOVERGEN:HBG000844 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ EMBL:X76771 EMBL:L37374 EMBL:AF523117
EMBL:BC000323 IPI:IPI00026215 PIR:A56531 RefSeq:NP_004102.1
UniGene:Hs.409065 UniGene:Hs.741166 PDB:1U7B PDB:1UL1 PDB:3Q8K
PDB:3Q8L PDB:3Q8M PDB:3UVU PDBsum:1U7B PDBsum:1UL1 PDBsum:3Q8K
PDBsum:3Q8L PDBsum:3Q8M PDBsum:3UVU ProteinModelPortal:P39748
SMR:P39748 DIP:DIP-24216N IntAct:P39748 MINT:MINT-5004212
STRING:P39748 PhosphoSite:P39748 DMDM:729475 PaxDb:P39748
PeptideAtlas:P39748 PRIDE:P39748 DNASU:2237 Ensembl:ENST00000305885
GeneID:2237 KEGG:hsa:2237 UCSC:uc001nsg.3 GeneCards:GC11P061560
HGNC:HGNC:3650 HPA:CAB002262 HPA:HPA006748 MIM:600393
neXtProt:NX_P39748 PharmGKB:PA28090 InParanoid:P39748
PhylomeDB:P39748 BindingDB:P39748 ChEMBL:CHEMBL5027 ChiTaRS:FEN1
EvolutionaryTrace:P39748 GenomeRNAi:2237 NextBio:9055
ArrayExpress:P39748 Bgee:P39748 CleanEx:HS_FEN1
Genevestigator:P39748 GermOnline:ENSG00000168496 GO:GO:0008309
Uniprot:P39748
Length = 380
Score = 221 (82.9 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 74/249 (29%), Positives = 113/249 (45%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 63/225 (28%), Positives = 102/225 (45%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT- 180
EC LL L G+P L A EAEA CA L G V A T D D FG+ +++ + +
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 181 -KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDE 238
K P + + +S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +E
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEE 258
Query: 239 ILNILHKIGNGDIPQYWGDIKSTE---EAVSHSDESMPMIKSSH-----CSF-CGHPGTK 289
I+ L +P+ W ++ + E ES+ + S F CG
Sbjct: 259 IVRRLDP-NKYPVPENWLHKEAHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFS 317
Query: 290 RAHFKFSCEYCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
+ + ++ + +G + D FK SL + RKE E K
Sbjct: 318 EERIRSGVKR-LSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPK 361
Score = 37 (18.1 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 376 ISWGSPMTEMLVDFLVYHQPWQPSYIR 402
+ W P E L+ F+ + + IR
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIR 322
>FB|FBgn0025832 [details] [associations]
symbol:Fen1 "Flap endonuclease 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC] [GO:0048256 "flap
endonuclease activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] HAMAP:MF_00614 InterPro:IPR003583 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00278 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:AE013599 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0022008 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0004527 GO:GO:0004519
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AL031863
CTD:2237 GeneTree:ENSGT00640000091478 KO:K04799 OMA:DYDSLLF
EMBL:BT100031 PIR:T13692 RefSeq:NP_523765.1 UniGene:Dm.23253
HSSP:O50123 ProteinModelPortal:Q7K7A9 SMR:Q7K7A9 STRING:Q7K7A9
PaxDb:Q7K7A9 PRIDE:Q7K7A9 EnsemblMetazoa:FBtr0087075 GeneID:36887
KEGG:dme:Dmel_CG8648 UCSC:CG8648-RA FlyBase:FBgn0025832
InParanoid:Q7K7A9 OrthoDB:EOG4W0VVR PhylomeDB:Q7K7A9
GenomeRNAi:36887 NextBio:800894 Bgee:Q7K7A9 Uniprot:Q7K7A9
Length = 385
Score = 217 (81.4 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 77/274 (28%), Positives = 122/274 (44%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG---IL 109
L F+RTI L G PV+V DG P LKS R R L A +
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 110 VER-NQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+E+ N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCIRPNT--KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDE-ILNILHKIGNGDIPQYW 255
G A++ + + + E IL+ L +P+ W
Sbjct: 242 GPKRAIELINTYRDIETILDNLDS-SKYTVPENW 274
>UNIPROTKB|Q58DH8 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0005739 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006281 GO:GO:0030145 GO:GO:0090305
GO:GO:0004523 GO:GO:0017108 GO:GO:0043137 GO:GO:0008409
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 CTD:2237
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:BT021527 EMBL:BT021540 EMBL:BT021619 EMBL:BT021755
EMBL:BC105255 IPI:IPI00693879 RefSeq:NP_001030285.1
UniGene:Bt.10503 ProteinModelPortal:Q58DH8 SMR:Q58DH8 STRING:Q58DH8
Ensembl:ENSBTAT00000000071 GeneID:616242 KEGG:bta:616242
InParanoid:Q58DH8 NextBio:20900037 Uniprot:Q58DH8
Length = 380
Score = 219 (82.2 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 75/249 (30%), Positives = 115/249 (46%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEG---ILVER-NQTFLKCVQ----ECVELLEL 129
P LKS R R L A+ VE+ + +K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 63/225 (28%), Positives = 101/225 (44%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT- 180
EC LL L G+P L A EAEA CA L G V A T D D FG+ +++ + +
Sbjct: 140 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 199
Query: 181 -KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDE 238
K P + + +S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +E
Sbjct: 200 KKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEE 258
Query: 239 ILNILHKIGNGDIPQYWGDIKSTE---EAVSHSDESMPMIKSSH-----CSF-CGHPGTK 289
I+ L +P+ W ++ + E ES+ + S F CG
Sbjct: 259 IVRRLDP-NKYPVPENWLHKEAQQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFS 317
Query: 290 RAHFKFSCEYCINDNNEGCL--KKPDGFKCNCSLCNKNRKEKEQK 332
+ ++ + +G + D FK SL + RKE E K
Sbjct: 318 EERIRSGVRR-LSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPK 361
Score = 37 (18.1 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 376 ISWGSPMTEMLVDFLVYHQPWQPSYIR 402
+ W P E L+ F+ + + IR
Sbjct: 296 LKWSEPNEEELIKFMCGEKQFSEERIR 322
Score = 37 (18.1 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 335 ENWWIKVCSKIALETNFPNDEIVTMYLCENN 365
ENW K ++ LE + E V + E N
Sbjct: 272 ENWLHKEAQQLFLEPEVLDPESVELKWSEPN 302
>UNIPROTKB|Q5ZLN4 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0030145
"manganese ion binding" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0003677 GO:GO:0006281 GO:GO:0030145
GO:GO:0090305 GO:GO:0004523 GO:GO:0017108 GO:GO:0043137
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
CTD:2237 GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853
HOVERGEN:HBG000844 KO:K04799 OMA:DYDSLLF OrthoDB:EOG415GDQ
EMBL:AB058602 EMBL:AJ719700 IPI:IPI00598102 RefSeq:NP_001072959.1
UniGene:Gga.4353 ProteinModelPortal:Q5ZLN4 SMR:Q5ZLN4 STRING:Q5ZLN4
PRIDE:Q5ZLN4 Ensembl:ENSGALT00000005734 GeneID:769677
KEGG:gga:769677 InParanoid:Q5ZLN4 NextBio:20919905 Uniprot:Q5ZLN4
Length = 381
Score = 215 (80.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 72/249 (28%), Positives = 122/249 (48%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEG---ILVER-NQTFLKCVQ----ECVELLEL 129
P LKS R R + L A+E +E+ ++ +K Q EC +LL L
Sbjct: 88 KPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLML 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P ++A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
++ + LGL + + + +L+G D+ ++GIG A++ + Q+ + +EI+ +
Sbjct: 208 HLNRVLQDLGLTWEQFVDLCILLGCDY-CESIRGIGPKRAVELIKQHKTIEEIIQHIDT- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 KKYPLPENW 274
Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 59/246 (23%), Positives = 115/246 (46%)
Query: 105 EEGILVERNQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
EE + + ++ +K Q EC +LL L G+P ++A GEAEA CA L G V A T
Sbjct: 119 EEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATE 178
Query: 161 DSDAFLFGAKCVVKCIRPNT--KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
D D FG+ +++ + + K P + + ++ + LGL + + + +L+G D+
Sbjct: 179 DMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDY-CES 237
Query: 219 VQGIGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYWGDIKSTE-----EAVSHSDESM 272
++GIG A++ + Q+ + +EI+ + +P+ W ++ + + ++ D +
Sbjct: 238 IRGIGPKRAVELIKQHKTIEEIIQHIDT-KKYPLPENWLHKEAQKLFLEPDVINPDDVEL 296
Query: 273 PMIKSSH---CSF-CGHPGTKRAHFKFSCEYCINDNNEGCL--KKPDGFKCNCSLCNKNR 326
+ + F CG + + ++ + +G + D FK S+ + R
Sbjct: 297 KWTEPNEEELVQFMCGEKQFNEERIRNGVKR-LSKSRQGSTQGRLDDFFKVTGSITSAKR 355
Query: 327 KEKEQK 332
KE E K
Sbjct: 356 KEPETK 361
Score = 40 (19.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 372 DGPSISWGSPMTEMLVDFLVYHQPWQPSYIR 402
D + W P E LV F+ + + IR
Sbjct: 292 DDVELKWTEPNEEELVQFMCGEKQFNEERIR 322
>DICTYBASE|DDB_G0284987 [details] [associations]
symbol:repG "XPG" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=IEA;ISS] [GO:0048256 "flap endonuclease activity"
evidence=ISS] [GO:0030145 "manganese ion binding" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0284987 GO:GO:0005739
GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000073 GO:GO:0030145 GO:GO:0004527 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0048256 KO:K04799
OMA:DYDSLLF RefSeq:XP_639977.1 ProteinModelPortal:Q54NU0
STRING:Q54NU0 EnsemblProtists:DDB0231109 GeneID:8624889
KEGG:ddi:DDB_G0284987 InParanoid:Q54NU0 ProtClustDB:PTZ00217
Uniprot:Q54NU0
Length = 384
Score = 216 (81.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 65/215 (30%), Positives = 110/215 (51%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL+ F+RTI L ++ G P++V DG+ LKS R R L A E E
Sbjct: 64 HLQGMFYRTIKLISR-GIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGTNE 122
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
Q F K V ++C++LL L G+P++KA EAEA CA++ +G A + D D
Sbjct: 123 EVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMD 182
Query: 164 AFLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
+ G+ +++ + K P + + + GLGL + I +S+L+G D+ + ++G
Sbjct: 183 SLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDY-CDSIKG 241
Query: 222 IGLDTALQFVQNF-SEDEILNILHKIGNGDIPQYW 255
IG A++ +Q S +E++ L K +P+++
Sbjct: 242 IGPKRAIELIQKHKSLEEVIKHLDK-SKYPLPEFF 275
Score = 38 (18.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 259 KSTEEAVSHSDES 271
KS EE + H D+S
Sbjct: 255 KSLEEVIKHLDKS 267
>TAIR|locus:2146824 [details] [associations]
symbol:AT5G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] HAMAP:MF_00614 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 InterPro:IPR023426
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005829
GO:GO:0005739 EMBL:CP002688 GO:GO:0005654 GO:GO:0005730
GO:GO:0000287 GO:GO:0006284 GO:GO:0003677 GO:GO:0090305
GO:GO:0017108 GO:GO:0043137 GO:GO:0008409 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K04799 OMA:DYDSLLF IPI:IPI00536220
RefSeq:NP_850877.2 UniGene:At.47103 ProteinModelPortal:F4K191
SMR:F4K191 PRIDE:F4K191 EnsemblPlants:AT5G26680.1 GeneID:832721
KEGG:ath:AT5G26680 ArrayExpress:F4K191 Uniprot:F4K191
Length = 453
Score = 210 (79.0 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 75/216 (34%), Positives = 113/216 (52%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVA-EEGIL 109
HL+ F RTI L + G PV+V DG P LK Q LA+ Y DA+ L A E G
Sbjct: 64 HLQGMFNRTIRLL-EAGIKPVYVFDGKPPELKRQ-ELAKRYSKRADATADLTGAIEAGNK 121
Query: 110 --VER-NQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
+E+ ++ +K ++ C LL L G+PV++A EAEA CA L G V + D
Sbjct: 122 EDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDM 181
Query: 163 DAFLFGA-KCVVKCIRPNTKE-PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
D+ FGA K + + P++++ P + ++ I L L I + +L G D+ + ++
Sbjct: 182 DSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIR 240
Query: 221 GIGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYW 255
GIG TAL+ + Q+ S + IL L+K IP+ W
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNK-ERYQIPEEW 275
Score = 42 (19.8 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 376 ISWGSPMTEMLVDFLV 391
I W SP E +V FLV
Sbjct: 298 IKWTSPDEEGIVQFLV 313
>UNIPROTKB|F1P953 [details] [associations]
symbol:BIVM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 SUPFAM:SSF47807 PANTHER:PTHR11081:SF1
TIGRFAMs:TIGR00600 GeneTree:ENSGT00640000091542 OMA:MSNISIW
EMBL:AAEX03013354 Ensembl:ENSCAFT00000009681 Uniprot:F1P953
Length = 1600
Score = 175 (66.7 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 45/113 (39%), Positives = 62/113 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K N
Sbjct: 1187 ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF-NKN 1245
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1246 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEF 1297
Score = 81 (33.6 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 31 DLSYWIVQHETAIKK---NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQAR 87
++S W+ Q ++ NS+ HL LT F + F P+FV DG LK Q
Sbjct: 455 NISIWLNQALRGVRDCHGNSIGNAHL-LTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTL 513
Query: 88 LARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R +R + A+ E +L +TFLK
Sbjct: 514 AKRRHRKDLAATDSRKTTEKLL----KTFLK 540
Score = 60 (26.2 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 20/89 (22%), Positives = 36/89 (40%)
Query: 324 KNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMT 383
KN+K + ++ K K+ L FPN + YL + G S WG P
Sbjct: 1317 KNKKIRPNP-YDTKVKKKLRKLQLTPGFPNPAVADAYL---KPVVDDSRG-SFLWGKPDL 1371
Query: 384 EMLVDFLVYHQPWQPSYIRQKMLPMLSTI 412
+ + +F + W + + + P+L +
Sbjct: 1372 DKIREFCQRYFGWNRTKTDESLFPVLKQL 1400
Score = 48 (22.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 383 TEMLVD--FLVYHQPWQPSY-IRQKMLPMLSTIYLR---EMATNPVQTL-LCGQYEFDSI 435
T++ +D F + Q Q + IR + L T LR E A + ++ + + + +F+
Sbjct: 1405 TQLRIDSFFRLAQQERQDAKGIRSQRLNRAVTCMLRKEREAAASEIEAVSVAMENDFEFP 1464
Query: 436 RRVKIRYGHQSYVVKWKKAAS 456
+ K + +S V KWK+++S
Sbjct: 1465 DKAKGKTQKRSIVNKWKESSS 1485
Score = 43 (20.2 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 537 LESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSS 588
L+ ++ QL I F+R A+ + Q+ G + + + KE +S
Sbjct: 1397 LKQLNAQQTQLRIDSFFRLAQQERQDAKGIRSQRLNRAVTCMLRKEREAAAS 1448
Score = 42 (19.8 bits), Expect = 1.4e-13, Sum P(4) = 1.4e-13
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 518 RELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNC-QV 576
+ L R T LR E E + EF AK ++Q++S + K+S+ +
Sbjct: 1429 QRLNRAVTCMLRKEREAAASEIEAVSVAMENDFEFPDKAKGKTQKRSIVNKWKESSSPKK 1488
Query: 577 DRIS--KENRR 585
R+S K+ RR
Sbjct: 1489 KRLSDSKQERR 1499
Score = 42 (19.8 bits), Expect = 6.7e-12, Sum P(4) = 6.7e-12
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 407 PMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRY 442
P ++ YL+ + + + L G+ + D IR RY
Sbjct: 1346 PAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRY 1381
>UNIPROTKB|A4QS18 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:CM001234 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K04799 OrthoDB:EOG41VPBP RefSeq:XP_003716519.1 STRING:A4QS18
EnsemblFungi:MGG_03419T0 GeneID:2676517 KEGG:mgr:MGG_03419
Uniprot:A4QS18
Length = 394
Score = 210 (79.0 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 73/253 (28%), Positives = 119/253 (47%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ N HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSNGEMLTNEDGQTTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQTFLKCV--------QECVELLE 128
P LKS LAR Y+ +A L A E E + F + +EC +LL+
Sbjct: 88 APPKLKS-GELARRYQRKQEALEGLEEARETGTAEDVEKFSRRTVRVTREHNEECRQLLK 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFEC 186
L G+P + A EAEA CA L G V A + D D F + +++ + + KEP +
Sbjct: 147 LMGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ + GL + RK + + +L+G D+ L+ + +G TAL+ ++ E I+ K+
Sbjct: 207 IHVDKVLEGLDMDRKQFVDLCILLGCDY-LDPIPKVGPSTALKLIREHGSLE--TIVEKM 263
Query: 247 GNGD----IPQYW 255
G+ +P+ W
Sbjct: 264 KKGELKYTVPEDW 276
Score = 37 (18.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 375 SISWGSPMTEMLVDFLVYHQPWQPSYIR 402
+ W P E LV +LV + + +R
Sbjct: 299 NFKWEKPDVEGLVKYLVTEKGFSEDRVR 326
>FB|FBgn0002887 [details] [associations]
symbol:mus201 "mutagen-sensitive 201" species:7227
"Drosophila melanogaster" [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 EMBL:AE014134
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0006289 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10846 PANTHER:PTHR11081:SF1
OMA:VYKNMFN GeneTree:ENSGT00640000091542 RefSeq:NP_001027232.1
UniGene:Dm.3099 ProteinModelPortal:Q4LDP6 SMR:Q4LDP6 STRING:Q4LDP6
PaxDb:Q4LDP6 PRIDE:Q4LDP6 EnsemblMetazoa:FBtr0005673 GeneID:3772069
KEGG:dme:Dmel_CG10890 UCSC:CG10890-RA CTD:3772069
FlyBase:FBgn0002887 InParanoid:Q4LDP6 OrthoDB:EOG4H44JN
PhylomeDB:Q4LDP6 NextBio:852313 ArrayExpress:Q4LDP6 Uniprot:Q4LDP6
Length = 1257
Score = 191 (72.3 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 46/114 (40%), Positives = 62/114 (54%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 883 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 942
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 943 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDYT-TGIHGIGAVTALEILASFS 994
Score = 65 (27.9 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 340 KVCSKIALETNFPNDEIVTMYLCENNGTFTATDG-PSISWGSPMTEMLVDFLVYHQPWQP 398
K I L FP+ +V YL T D + SWG+P E + +F W
Sbjct: 1039 KKLKNIELHEGFPSGAVVEAYLAP-----TIDDNRDAFSWGTPDVESIREFTRKSFGWTT 1093
Query: 399 SYIRQKMLPMLSTI 412
S ++P++ I
Sbjct: 1094 SKTDDILMPVMKKI 1107
Score = 53 (23.7 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 31 DLSYWIVQHETAIKKN---SVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQAR 87
D+S W+ Q + N ++ HL F R L + PVF+ DG LK
Sbjct: 51 DISIWLHQVVKGFQDNKGSALSNAHLLGLFHRLCKLLY-YRVRPVFIFDGCVPQLKRDT- 108
Query: 88 LAR 90
+AR
Sbjct: 109 IAR 111
>CGD|CAL0000208 [details] [associations]
symbol:orf19.547 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006286 "base-excision
repair, base-free sugar-phosphate removal" evidence=IEA]
[GO:0000734 "gene conversion at mating-type locus, DNA repair
synthesis" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 CGD:CAL0000208 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 GO:GO:0004519
EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K04799 RefSeq:XP_717410.1
RefSeq:XP_717504.1 ProteinModelPortal:Q5A6K8 STRING:Q5A6K8
GeneID:3640904 GeneID:3640946 KEGG:cal:CaO19.547
KEGG:cal:CaO19.8182 Uniprot:Q5A6K8
Length = 372
Score = 181 (68.8 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 74/266 (27%), Positives = 121/266 (45%)
Query: 14 YARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLF 64
Y F+ L L ++VA+D S + Q A++++ + HL F+RTI +
Sbjct: 18 YKEFQ-LKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSGMFYRTIKMV 76
Query: 65 AKFGAFPVFVVDGTPSPLKS---QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV- 120
PV+V DG P LK + RL R R + +EG VE F K +
Sbjct: 77 EN-NIKPVYVFDGKPPVLKGGELEKRLLR--REEAQKQKTALGDEGT-VEEVLKFEKRLV 132
Query: 121 -------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
+E +LL+L G+P + A EAEA CA+L G V A + D D + ++
Sbjct: 133 RVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLL 192
Query: 174 KCIRPNT--KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
+ + + K P + D AGL + ++ I + +L+G D+ ++GIG TA + +
Sbjct: 193 RHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDY-CESIKGIGQATAFKLI 251
Query: 232 QNF-SEDEILN-ILHKIGNGDIPQYW 255
+ S D I+ I + +P+ W
Sbjct: 252 KEHGSLDNIVEWIKNNKTKYTLPENW 277
Score = 64 (27.6 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 338 WIKVC-SKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPW 396
WIK +K L N+P DE +++ N T ++ W P + L++F+V + +
Sbjct: 263 WIKNNKTKYTLPENWPYDEARQLFM---NPEVTNASEINLKWKEPDVDGLIEFMVKQKGF 319
Query: 397 QPSYIR 402
IR
Sbjct: 320 SEDRIR 325
Score = 40 (19.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 520 LKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDS 572
+K+K S R KL+ GVQ + F++ K +++ AD K+S
Sbjct: 314 VKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKTDDKKRK-AD-PKES 364
>ASPGD|ASPL0000038590 [details] [associations]
symbol:AN2764 species:162425 "Emericella nidulans"
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045145 "single-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 EMBL:BN001306 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000049 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF
RefSeq:XP_660368.1 ProteinModelPortal:Q5B9L6 STRING:Q5B9L6
EnsemblFungi:CADANIAT00010345 GeneID:2874366 KEGG:ani:AN2764.2
OrthoDB:EOG41VPBP Uniprot:Q5B9L6
Length = 395
Score = 193 (73.0 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 64/217 (29%), Positives = 104/217 (47%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLARFYRSTI---DASTLPVAE 105
HL F+RT+ + G P++V DG P LKS R AR + +T +A AE
Sbjct: 63 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKETGTAE 121
Query: 106 EGILVERNQTFLKCVQ--ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ R + EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 122 DVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 181
Query: 164 AFLFGAKCVVKCIR--PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ + KEP + ++ GLG+ R I + +L+G D+ L +
Sbjct: 182 TLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDY-LEPIPK 240
Query: 222 IGLDTALQFVQNFSE-DEILNILHKIGNGD--IPQYW 255
+G +TAL+ +++ ++++ + K IP+ W
Sbjct: 241 VGPNTALKLIRDHGTLEKVVESIEKDPKQKYVIPESW 277
Score = 48 (22.0 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 344 KIALETNFPNDEIVTMYLCENNGTFTATDGP-SISWGSPMTEMLVDFLVYHQPWQPSYIR 402
K + ++P + ++L N A D W +P E LVDFLV + + +R
Sbjct: 270 KYVIPESWPYQDARELFL--NPDVRDANDPECDFKWEAPDIEGLVDFLVKDKGFNEDRVR 327
Score = 40 (19.1 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 516 ERRELKRKRTSSLRSEESNGKLESPKSK 543
E+ LKRK ++ E+ K E K+K
Sbjct: 358 EKATLKRKHDEKIQ-EQKKRKKEEAKAK 384
>ZFIN|ZDB-GENE-031112-11 [details] [associations]
symbol:fen1 "flap structure-specific endonuclease 1"
species:7955 "Danio rerio" [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 ZFIN:ZDB-GENE-031112-11 GO:GO:0005739
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0060041 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 EMBL:AY391423 EMBL:AY648844 EMBL:BC049413
EMBL:BC071488 IPI:IPI00484274 IPI:IPI00973671 RefSeq:NP_942115.1
UniGene:Dr.75750 HSSP:O93634 ProteinModelPortal:Q6TNU4 SMR:Q6TNU4
STRING:Q6TNU4 PRIDE:Q6TNU4 Ensembl:ENSDART00000024224 GeneID:386707
KEGG:dre:386707 CTD:2237 GeneTree:ENSGT00640000091478
HOGENOM:HOG000193853 HOVERGEN:HBG000844 InParanoid:Q6DRB5 KO:K04799
OMA:DYDSLLF OrthoDB:EOG415GDQ NextBio:20813986 Bgee:Q6TNU4
Uniprot:Q6TNU4
Length = 380
Score = 202 (76.2 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 73/237 (30%), Positives = 110/237 (46%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLES-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + +EC +LL L
Sbjct: 88 KPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL-NI 242
S I + L + I + +L+G D+ ++GIG A+ + Q+ S +EIL NI
Sbjct: 208 HFSRILQDMELTHQQFIDLCILLGCDY-CGTIKGIGPKRAIDLIKQHGSIEEILENI 263
Score = 39 (18.8 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 372 DGPSIS--WGSPMTEMLVDFLVYHQPWQPSYIR 402
DG S+ W P + L+ F+ + + IR
Sbjct: 290 DGTSVDLKWNEPDEDGLIQFMCAEKQFSEDRIR 322
>WB|WBGene00019004 [details] [associations]
symbol:xpg-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 SMART:SM00279 SMART:SM00484 SMART:SM00485
GO:GO:0009792 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004518 EMBL:FO081416 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GeneTree:ENSGT00640000091542 RefSeq:NP_491891.2
ProteinModelPortal:O44737 SMR:O44737 STRING:O44737 PaxDb:O44737
EnsemblMetazoa:F57B10.6 GeneID:186441 KEGG:cel:CELE_F57B10.6
UCSC:F57B10.6 CTD:186441 WormBase:F57B10.6 HOGENOM:HOG000019794
InParanoid:O44737 OMA:MIPQDSK NextBio:931854 Uniprot:O44737
Length = 820
Score = 131 (51.2 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 38/92 (41%), Positives = 49/92 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ G W +++P A L+ L K++A+D+S WI Q + A + P PHLRL R
Sbjct: 1 MGITG-LWKIVEPTATEIPLECLEGKKLAIDVSIWIYQAQLAYPSDQ-PFPHLRLLVNRL 58
Query: 61 INL-FAKFGAFPVFVVDGTP-SPLKSQARLAR 90
L F K PVFV DG PLK Q AR
Sbjct: 59 SKLLFYKIR--PVFVFDGPQVPPLKRQVLEAR 88
Score = 118 (46.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 39/121 (32%), Positives = 63/121 (52%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTK-E 182
E L G+P +++ GEAEA C +L G VD ++ DSD + FGA+ V + N + +
Sbjct: 474 EFLTNAGIPWIESPGEAEAQCVELERLGLVDGVVSDDSDVWAFGAQHVYRHMFSKNRRVQ 533
Query: 183 PF-ECYCISDIEAGLG-LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ E + L L+R+ I+++LL G D+ G+ +G AL+ V + E I
Sbjct: 534 RYGEQTTANRDNCKLFCLQREDYISIALLSGGDY-CAGLVKVGAIGALELVSEYVECRID 592
Query: 241 N 241
N
Sbjct: 593 N 593
Score = 41 (19.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 83 KSQARLARFYRSTIDAS 99
+SQ RL RF+ +D+S
Sbjct: 718 QSQMRLDRFFAQKLDSS 734
Score = 37 (18.1 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 218 GVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIP 252
G+ + L A++ V + S+ ILN ++K DIP
Sbjct: 115 GLDDVALANAIKEVISPSKKVILNDIYK----DIP 145
>POMBASE|SPAC3G6.06c [details] [associations]
symbol:rad2 "FEN-1 endonuclease Rad2" species:4896
"Schizosaccharomyces pombe" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=ISO] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IGI] [GO:0043596 "nuclear
replication fork" evidence=IC] [GO:0045145 "single-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IDA]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPAC3G6.06c GO:GO:0005739
GO:GO:0005654 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0043596 GO:GO:0000723
GO:GO:0000731 GO:GO:0017108 GO:GO:0043137 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0045145
HOGENOM:HOG000193853 KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP
EMBL:X77041 PIR:A56054 RefSeq:NP_594972.1 ProteinModelPortal:P39750
STRING:P39750 EnsemblFungi:SPAC3G6.06c.1 GeneID:2543164
KEGG:spo:SPAC3G6.06c NextBio:20804190 Uniprot:P39750
Length = 380
Score = 182 (69.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 61/215 (28%), Positives = 97/215 (45%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLARFYRSTIDASTLPVAEEGI 108
HL F+RT+ + G P FV DG P LKS R+AR ++ D
Sbjct: 64 HLMGMFYRTLRIVDN-GIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGTAE 122
Query: 109 LVER-NQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+V+R + +K + E LLEL G+P + A EAEA CA L G V A + D D
Sbjct: 123 MVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMD 182
Query: 164 AFLFGAKCVVKCIR--PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ + KEP Y I GL + + + + +L+G D+ ++G
Sbjct: 183 TLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDY-CEPIRG 241
Query: 222 IGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYW 255
+G A++ ++ + D + + IP+ W
Sbjct: 242 VGPARAVELIRQYGTLDRFVKEADR-SKYPIPEDW 275
Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 343 SKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLV 391
SK + ++P ++ ++L + + + W SP + ++ FLV
Sbjct: 267 SKYPIPEDWPYEDARRLFL---DAEVLPGEEIELKWKSPDADGIIQFLV 312
>WB|WBGene00020442 [details] [associations]
symbol:gen-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0008821 "crossover junction
endodeoxyribonuclease activity" evidence=IDA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IMP] [GO:0072422 "signal
transduction involved in DNA damage checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0005737
GO:GO:0008630 GO:GO:0003677 GO:GO:0000003 GO:GO:0000724
GO:GO:0008821 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
GeneTree:ENSGT00640000091542 EMBL:FO080619 PIR:T34350
RefSeq:NP_498361.1 ProteinModelPortal:Q22418 STRING:Q22418
EnsemblMetazoa:T12A2.8.1 EnsemblMetazoa:T12A2.8.2 GeneID:175885
KEGG:cel:CELE_T12A2.8 UCSC:T12A2.8.1 CTD:175885 WormBase:T12A2.8
HOGENOM:HOG000021109 InParanoid:Q22418 OMA:HIWLYES NextBio:890148
GO:GO:0072422 Uniprot:Q22418
Length = 434
Score = 180 (68.4 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 63/246 (25%), Positives = 101/246 (41%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
M + G W+ R + +RDK +++D W+ + + + P+ L TFF
Sbjct: 1 MTING-IWEWANHVVRKVPNETMRDKTLSIDGHIWLYESLKGCEAHHQQTPNSYLVTFFT 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I + P+ V D + S A ++ + + +
Sbjct: 60 RIQRLLELKIIPIVVFDNINA--SSSAHESKDQNEFVPRKRRSFGDSPFT-----NLVDH 112
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V + LL G+ V+ A G+ EA CA+L G CIT D D FLFG K + +
Sbjct: 113 VYKTNALLTELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYRF--DF 170
Query: 180 TKEPFECYCISDI-EAGLG-------LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
T C+ DI LG + R HLI+ ++L+G D+ GVQ IG+ + +
Sbjct: 171 TAGTSSTACLHDIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQRGVQNIGIVSVFDIL 230
Query: 232 QNFSED 237
F +D
Sbjct: 231 GEFGDD 236
Score = 38 (18.4 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 506 KKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSK 543
+ ++ ++ N KRKR+ S + + + K + P K
Sbjct: 375 ESLEDYISANNTWMRKRKRSESPQILQHHAKRQVPDRK 412
>UNIPROTKB|E9PLG0 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00982888
ProteinModelPortal:E9PLG0 SMR:E9PLG0 Ensembl:ENST00000524465
ArrayExpress:E9PLG0 Bgee:E9PLG0 Uniprot:E9PLG0
Length = 126
Score = 151 (58.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 45/134 (33%), Positives = 72/134 (53%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L L K +AVDLS W+ + +T +KK SV KPHLR FF
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQT-VKKMMGSVMKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R I+ + VFV++G P LK+ +++ +S +S +++ R+ F
Sbjct: 59 R-ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQSRYGSSGKSWSQK---TGRSH-FKS 112
Query: 119 CVQECVELLELFGM 132
++EC+ +LE G+
Sbjct: 113 VLRECLHMLECLGI 126
>WB|WBGene00000794 [details] [associations]
symbol:crn-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;TAS] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006309 "apoptotic DNA fragmentation" evidence=IGI;IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0040011 GO:GO:0040035
GO:GO:0004527 GO:GO:0006309 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0001703 GO:GO:0048256
GeneTree:ENSGT00640000091478 HOGENOM:HOG000193853 KO:K04799
OMA:DYDSLLF EMBL:AY303575 EMBL:FO081580 RefSeq:NP_491168.1
UniGene:Cel.6649 HSSP:O29975 ProteinModelPortal:Q9N3T2 SMR:Q9N3T2
DIP:DIP-26974N IntAct:Q9N3T2 MINT:MINT-226245 STRING:Q9N3T2
PaxDb:Q9N3T2 EnsemblMetazoa:Y47G6A.8 GeneID:171917
KEGG:cel:CELE_Y47G6A.8 UCSC:Y47G6A.8 CTD:171917 WormBase:Y47G6A.8
InParanoid:Q9N3T2 NextBio:873233 Uniprot:Q9N3T2
Length = 382
Score = 171 (65.3 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 67/245 (27%), Positives = 109/245 (44%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP--------KPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+ VA+D S + Q A++++ HL RT+ +F G PV+V DG
Sbjct: 29 RTVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGMLNRTVRMFEN-GVKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF----LKCVQ----ECVELLEL 129
P +K R R L A+E V+ + F +K + E LL L
Sbjct: 88 KPPDMKGGELEKRSERRAEAEKALTEAKEKGDVKEAEKFERRLVKVTKQQNDEAKRLLGL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFECY 187
G+PV++A EAEA CA L G V +T D DA FG+ +++ + P K+ P + +
Sbjct: 148 MGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDALTFGSTVLLRHFLAPVAKKIPIKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+S + L + I + +L+G D+ ++G+G A++ ++ E IL I
Sbjct: 208 NLSLALEEMKLSVEEFIDLCILLGCDY-CGTIRGVGPKKAVELIRQHKNIE--TILENID 264
Query: 248 NGDIP 252
P
Sbjct: 265 QNKYP 269
>POMBASE|SPBC29A10.05 [details] [associations]
symbol:exo1 "exonuclease I Exo1" species:4896
"Schizosaccharomyces pombe" [GO:0000706 "meiotic DNA double-strand
break processing" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=IGI;IMP] [GO:0006312 "mitotic recombination" evidence=TAS]
[GO:0008409 "5'-3' exonuclease activity" evidence=IMP] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 PomBase:SPBC29A10.05 GO:GO:0005634
GO:GO:0005819 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006298 GO:GO:0003690 GO:GO:0006312 GO:GO:0000723
GO:GO:0000706 GO:GO:0043570 GO:GO:0017108 GO:GO:0008409
eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 EMBL:L35174 PIR:T43288 RefSeq:NP_596050.1
ProteinModelPortal:P53695 STRING:P53695 EnsemblFungi:SPBC29A10.05.1
GeneID:2540348 KEGG:spo:SPBC29A10.05 NextBio:20801476
Uniprot:P53695
Length = 571
Score = 171 (65.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 74/258 (28%), Positives = 116/258 (44%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQ------HETAIKKNSVPKPHLR 54
MG+ G LLKP + ++ K + VD W+ + HE A K + +L+
Sbjct: 1 MGIKGLL-GLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKET--DKYLK 57
Query: 55 LTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL--PVAEEGILVER 112
+ + L +G P+ V DG P P K+ R R +A L + +EG +
Sbjct: 58 YAIHQALML-QYYGVKPLIVFDGGPLPCKASTEQKRKERRQ-EAFELGKKLWDEGKKSQA 115
Query: 113 NQTFLKCVQECVEL-------LELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
F +CV E+ L G+ + A EA+A L E +D IT DSD
Sbjct: 116 IMQFSRCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDML 175
Query: 166 LFGAKCVVKCIRPNTKEPF-ECYCI--SDI----EAGLGLKRKHLIAMSLLIGNDHDLNG 218
+FGA+ V+ + + F C I +DI + L L + L M++ G D+ +G
Sbjct: 176 VFGAQTVLFKM-----DGFGNCITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYT-DG 229
Query: 219 VQGIGLDTALQFVQNFSE 236
V G+GL TAL+++Q + E
Sbjct: 230 VAGMGLKTALRYLQKYPE 247
>UNIPROTKB|I3LQY2 [details] [associations]
symbol:ERCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00867 PRINTS:PR00066 PRINTS:PR00853
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 GO:GO:0008340
GO:GO:0043066 GO:GO:0003690 GO:GO:0003697 GO:GO:0035264
GO:GO:0004520 GO:GO:0010225 GO:GO:0000405 GO:GO:0009650
GO:GO:0005675 GO:GO:0006283 SUPFAM:SSF47807 GO:GO:0006295
GeneTree:ENSGT00640000091542 OMA:MSNISIW Ensembl:ENSSSCT00000029959
Uniprot:I3LQY2
Length = 1562
Score = 179 (68.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 45/113 (39%), Positives = 63/113 (55%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K N
Sbjct: 1159 ESQELLRLFGVPYIEAPMEAEAQCAILDLSDQTSGTITDDSDIWLFGARHVYKNFF-NKN 1217
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1218 KFVEYYQYVDFHSQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEF 1269
Score = 49 (22.3 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 537 LESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSS 588
L+ ++ QL I F+R A+ + QE G + + + KE +S
Sbjct: 1361 LKQLNAQQTQLRIDSFFRLAQQERQESKGIKSQRLNRAVTCMLRKEREEAAS 1412
Score = 49 (22.3 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 507 KVDHF--LQENERRE---LKRKR-----TSSLRSEESNGKLESPKSKGVQLSITEFYRSA 556
++D F L + ER+E +K +R T LR E E + +EF A
Sbjct: 1372 RIDSFFRLAQQERQESKGIKSQRLNRAVTCMLRKEREEAASEMEAASVAMAQDSEFLDEA 1431
Query: 557 KVQSQEKSGADLAKDSN 573
K ++Q++ +DS+
Sbjct: 1432 KGKTQKRGSVKRWQDSS 1448
Score = 45 (20.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 18/102 (17%), Positives = 40/102 (39%)
Query: 378 WGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRR 437
WG+P + + +F + W + + + P+L + ++ Q E +
Sbjct: 1330 WGTPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLNAQQTQLRIDSFFRLAQQERQESKG 1389
Query: 438 VKIRYGHQSYVVKWKK----AASAISGVKYTAPVDSDLHLEE 475
+K + +++ +K AAS + DS+ L+E
Sbjct: 1390 IKSQRLNRAVTCMLRKEREEAASEMEAASVAMAQDSEF-LDE 1430
Score = 40 (19.1 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 401 IRQKM--LPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRY 442
+++K+ L + YLR + + L G + D IR RY
Sbjct: 1302 VKKKLRKLQLAPXAYLRPVVDDSRGAFLWGTPDLDKIREFCQRY 1345
>SGD|S000001596 [details] [associations]
symbol:RAD27 "5' to 3' exonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000734 "gene
conversion at mating-type locus, DNA repair synthesis"
evidence=IMP] [GO:0006286 "base-excision repair, base-free
sugar-phosphate removal" evidence=IGI;IMP] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;IDA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IDA] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 SGD:S000001596 GO:GO:0005739 GO:GO:0005634
GO:GO:0005654 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0001302 EMBL:BK006944 EMBL:S93804 GO:GO:0006303 GO:GO:0017108
GO:GO:0043137 GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0000734 GeneTree:ENSGT00640000091478
KO:K04799 OMA:DYDSLLF OrthoDB:EOG41VPBP EMBL:Z28113 PIR:S22267
RefSeq:NP_012809.1 ProteinModelPortal:P26793 SMR:P26793
DIP:DIP-2325N IntAct:P26793 MINT:MINT-536469 STRING:P26793
PaxDb:P26793 PeptideAtlas:P26793 EnsemblFungi:YKL113C GeneID:853747
KEGG:sce:YKL113C CYGD:YKL113c NextBio:974807 Genevestigator:P26793
GermOnline:YKL113C GO:GO:0006286 Uniprot:P26793
Length = 382
Score = 163 (62.4 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 62/241 (25%), Positives = 110/241 (45%)
Query: 26 KRVAVDLSYWIVQHETAIKK-------NSVPKP--HLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ N + HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGI-LVERNQTFLKCV----QECVELLELFG 131
G P LKS R R L A + +++ + +K +E +LL L G
Sbjct: 88 GKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMG 147
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECYCI 189
+P + A EAEA CA+L +G V A + D D + +++ + + KEP
Sbjct: 148 IPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDT 207
Query: 190 SDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
+ GL L + + + +++G D+ ++G+G TAL+ ++ E I+ I +G
Sbjct: 208 ELVLRGLDLTIEQFVDLCIMLGCDY-CESIRGVGPVTALKLIKTHGSIE--KIVEFIESG 264
Query: 250 D 250
+
Sbjct: 265 E 265
>RGD|1309465 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10116 "Rattus norvegicus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0035312 "5'-3' exodeoxyribonuclease
activity" evidence=ISO] [GO:0043566 "structure-specific DNA
binding" evidence=ISO] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0048256 "flap endonuclease
activity" evidence=ISO] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
RGD:1309465 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298 GO:GO:0090305
GO:GO:0045190 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 OrthoDB:EOG4M91QT GO:GO:0048256
GO:GO:0045145 GO:GO:0051908 GO:GO:0043566 IPI:IPI00768759
Ensembl:ENSRNOT00000005314 UCSC:RGD:1309465 Uniprot:D3ZEB0
Length = 836
Score = 165 (63.1 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 69/263 (26%), Positives = 115/263 (43%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MG+ G +K + + + + VAVD W+ H+ AI +K + +P R
Sbjct: 1 MGIQGLL-QFIKEASEPVNVKKYKGQAVAVDTYCWL--HKGAIACAEKLAKGEPTDRYVG 57
Query: 58 F--RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQ 114
F + +N+ +G P+ V DG P K + +R R + + EG + E +
Sbjct: 58 FCMKFVNMLLSYGVKPILVFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARE 117
Query: 115 TFLKCVQ-------ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
F + V + ++ G+ L A EA+A A LN G V A IT DSD F
Sbjct: 118 CFTRSVNITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAF 177
Query: 168 GAKCVVKCIRP--NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
G K V+ + N E + + G + M +L G D+ L ++GIGL
Sbjct: 178 GCKKVILKMDQFGNGLEVDQARLGMCKQLGDVFTEEKFRYMCILSGCDY-LASLRGIGLA 236
Query: 226 TALQFVQNFSEDEILNILHKIGN 248
A + ++ + +I+ ++ KIG+
Sbjct: 237 KACKVLRLANNPDIVKVIKKIGH 259
>UNIPROTKB|G4NE19 [details] [associations]
symbol:MGG_00841 "Exonuclease 1" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 EMBL:CM001235 GO:GO:0003677
GO:GO:0006281 GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_003718138.1
ProteinModelPortal:G4NE19 EnsemblFungi:MGG_00841T0 GeneID:2674671
KEGG:mgr:MGG_00841 Uniprot:G4NE19
Length = 780
Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 77/289 (26%), Positives = 120/289 (41%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---KNSVPKPHLRLTF 57
MG+ G LLK R L + +AVD W+ H A+ + + KP +
Sbjct: 1 MGIVGLL-PLLKSIQRPTELKKFAGETLAVDAYGWL--HRGAVSCALELAQGKPTRKYVD 57
Query: 58 F--RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQ 114
F + + FGA P V DG P K+ +R R + + + G + Q
Sbjct: 58 FAMHRVRMVKYFGATPYIVFDGDFLPSKALTEASRAKRREESKKAGMELLKAGKPAQAYQ 117
Query: 115 TFLKCV-------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
F K + +E +E L+ +P + A EA+A L GYV I+ DSD +F
Sbjct: 118 EFQKAIDVTPEMARELIEELKKIDVPYVVAPYEADAQMVYLERNGYVSGIISEDSDLLVF 177
Query: 168 GAKCVV-------KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
GAK ++ +CI N +E F C + +I G M++ G D+ L+G+
Sbjct: 178 GAKRLLTKLDQHGQCIEVNRRE-F-C-AVREISL-TGWTDAEFRQMAIFSGCDY-LDGIN 232
Query: 221 GIGLDTALQFVQNFSEDE-ILNILHKIGNGDIPQ-YWGDIKSTEEAVSH 267
+GL TA + ++ E ++ L G I + Y K E H
Sbjct: 233 KMGLKTAYRMIRKHKTPEKVIRQLQFEGKHKISENYLAAFKQAELTFMH 281
>UNIPROTKB|E1C1G7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0043566 "structure-specific DNA binding"
evidence=IEA] [GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0048256 "flap endonuclease activity"
evidence=IEA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0002455
GO:GO:0006298 GO:GO:0006310 GO:GO:0090305
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AADN02011750 IPI:IPI00593066 Ensembl:ENSGALT00000017486
Uniprot:E1C1G7
Length = 798
Score = 173 (66.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 73/263 (27%), Positives = 112/263 (42%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQ--HETAIK-KNSVPKPHLRLTF 57
MG+ G +K A + R + VAVD W+ + + A K P H +
Sbjct: 1 MGIQGLL-QFIKEAAEPAHVKKYRGQAVAVDAYCWLHKGSYGCAEKLARGEPTDHYVVFC 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLP---VAEEGILVERNQ 114
+ +++ FG PV V DG P K + AR R A+ L + EG L E
Sbjct: 60 MKLVDMLLSFGIKPVLVFDGCTLPSKKEVEKAR--REKRQANLLKGKQLFREGKLSEARD 117
Query: 115 TFLKCVQ-------ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
F + V E ++ G+ + A EA+A A LN G V A IT DSD F
Sbjct: 118 CFARSVNVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGVVQAIITEDSDLLAF 177
Query: 168 GAKCVVKCIRP--NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
G K V I N E + + + G + M +L G D+ L+ + GIGL
Sbjct: 178 GCKKVFLKIDKFGNGLEIDQARLGNCKQLGNIFTEEKFRYMCILSGCDY-LSSIHGIGLA 236
Query: 226 TALQFVQNFSEDEILNILHKIGN 248
A + ++ + +I+ ++ K+G+
Sbjct: 237 KACKLLKLANNPDIIKVIKKMGH 259
Score = 38 (18.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 266 SHSDESMPMIKSSHCSF 282
S S S+P +K+ SF
Sbjct: 466 SESSNSLPRVKNKFASF 482
>UNIPROTKB|E9PM30 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 Pfam:PF00752 PRINTS:PR00853 SMART:SM00485
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 IPI:IPI00978436
ProteinModelPortal:E9PM30 SMR:E9PM30 Ensembl:ENST00000532257
ArrayExpress:E9PM30 Bgee:E9PM30 Uniprot:E9PM30
Length = 93
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P + L L K +AVDLS W+ + +T +KK SV KPHLR FF
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQT-VKKMMGSVMKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKS 84
R I+ + VFV++G P LK+
Sbjct: 59 R-ISYLTQMDVKLVFVMEGEPPKLKA 83
>UNIPROTKB|Q9W6K2 [details] [associations]
symbol:exo1 "Exonuclease 1" species:8355 "Xenopus laevis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0045145 "single-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=ISS] [GO:0048256 "flap
endonuclease activity" evidence=ISS] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006298 GO:GO:0006310 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 CTD:9156 HOVERGEN:HBG081488 GO:GO:0048256
GO:GO:0045145 EMBL:AF134570 EMBL:BC084102 RefSeq:NP_001083827.1
UniGene:Xl.489 ProteinModelPortal:Q9W6K2 GeneID:399140
KEGG:xla:399140 Xenbase:XB-GENE-982081 Uniprot:Q9W6K2
Length = 734
Score = 152 (58.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 69/260 (26%), Positives = 109/260 (41%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI-KKNSVPKPHLRLTFF- 58
MG+ G LK + + + K VAVD W+ + A +K + +P + F
Sbjct: 1 MGIQGLL-QFLKEASEPVHVKKYKGKTVAVDTYCWLHKGAFACAEKLAKGEPTDQYVQFC 59
Query: 59 -RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFY-RSTIDASTLPVAEEGILVERNQTF 116
+ +++ FG P+ V DG P K AR R T + EG L E + F
Sbjct: 60 MKLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREGKLAEARECF 119
Query: 117 LKCVQ-------ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA 169
+ V E ++ G+ + A EA++ A LN + +A IT DSD FG
Sbjct: 120 SRSVNITSSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNKNDFAEAIITEDSDLLAFGC 179
Query: 170 KCVV-KCIR-PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
K V+ K + N E + G + M +L G D+ L + GIGL A
Sbjct: 180 KKVLLKMDKFGNGLEIDQARFGMCRSLGDVFTEEKFRYMCILSGCDY-LPSIHGIGLAKA 238
Query: 228 LQFVQNFSEDEILNILHKIG 247
+ ++ + +I ++ KIG
Sbjct: 239 CKLLKVANNPDITKVIQKIG 258
Score = 59 (25.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 35/162 (21%), Positives = 68/162 (41%)
Query: 435 IRRVKIRYGHQSYVVKWKKAASAIS--GVK---YTAPVDSDLHLEEFMEYPQIHVDGDCW 489
I + K R +++ + K+ S++S G + + P D H E QI +G
Sbjct: 460 IHQPKTRNAFATFLQRQKQDCSSVSATGTRSRFFYKPADEKPHCTE---KEQIVCNGSAL 516
Query: 490 FLLTDENMKLVHSAFP-KKVDHFLQENERRELKRKRTSSLRSEES----NGKLES----- 539
+ + + S+ +K D +E + +R S L+++ S +G L+S
Sbjct: 517 DIAKETHELTEESSIKTEKEDSLSTISEVCKPNNQRISPLQNQRSCFTWSGSLDSESSPT 576
Query: 540 PKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISK 581
PK + LS+ +F+R+ E + S + D +S+
Sbjct: 577 PKQSPMLLSLQKFHRTTPYMQNEAENKPSWQSSCIKSDTVSQ 618
>UNIPROTKB|E1BF15 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:DAAA02042804 IPI:IPI00698763 RefSeq:XP_002694001.1
UniGene:Bt.62135 Ensembl:ENSBTAT00000012365 GeneID:506390
KEGG:bta:506390 NextBio:20867588 Uniprot:E1BF15
Length = 835
Score = 160 (61.4 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 65/238 (27%), Positives = 107/238 (44%)
Query: 28 VAVDLSYWIVQHETAI---KKNSVPKPHLRLTFF--RTINLFAKFGAFPVFVVDGTPSPL 82
VAVD W+ H+ A+ +K + +P + F + +N+ G P+ V DG P
Sbjct: 27 VAVDTYCWL--HKGAVACAEKLAKGEPTDKYVGFCMKLVNMLLSHGIKPILVFDGCTLPS 84
Query: 83 KSQARLARFYRSTIDASTLP---VAEEGILVERNQTFLKCVQ-------ECVELLELFGM 132
K + +R R A+ L + EG + E + F++ + ++ G+
Sbjct: 85 KKEVEKSR--RERRQANLLKGKQLLREGKVSEARECFIRSINITHTMAHNVIKAARSQGV 142
Query: 133 PVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECYCIS 190
L A EA+A A LN G V A IT DSD FG K V+ + N E +
Sbjct: 143 DCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGM 202
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
+ G + M +L G D+ L+ ++GIGL A + ++ + +IL ++ KIG+
Sbjct: 203 CKQLGDVFTEEKFRYMCILSGCDY-LSSLRGIGLAKACKLLRLANNPDILKVVRKIGH 259
>UNIPROTKB|Q9UQ84 [details] [associations]
symbol:EXO1 "Exonuclease 1" species:9606 "Homo sapiens"
[GO:0007126 "meiosis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0002455 "humoral immune response mediated by
circulating immunoglobulin" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0051908 "double-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0035312
"5'-3' exodeoxyribonuclease activity" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=IDA] [GO:0048256 "flap endonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=ISS;IDA;IMP;IPI] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0004527 "exonuclease
activity" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
EMBL:AF042282 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0003677 GO:GO:0006298 GO:GO:0006310
GO:GO:0045190 GO:GO:0004523 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 GO:GO:0016446 BRENDA:3.1.11.1 KO:K10746 CTD:9156
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 EMBL:AF084974 EMBL:AF091740 EMBL:AF091754
EMBL:AF091742 EMBL:AF091743 EMBL:AF091744 EMBL:AF091745
EMBL:AF091746 EMBL:AF091747 EMBL:AF091748 EMBL:AF091749
EMBL:AF091750 EMBL:AF091751 EMBL:AF091752 EMBL:AF091753
EMBL:AC004783 EMBL:AF060479 EMBL:AF549168 EMBL:AL365366
EMBL:BC007491 EMBL:AL080139 IPI:IPI00219173 IPI:IPI00556476
PIR:T12524 RefSeq:NP_003677.4 RefSeq:NP_006018.4 RefSeq:NP_569082.2
UniGene:Hs.498248 PDB:3QE9 PDB:3QEA PDB:3QEB PDBsum:3QE9
PDBsum:3QEA PDBsum:3QEB ProteinModelPortal:Q9UQ84 SMR:Q9UQ84
IntAct:Q9UQ84 STRING:Q9UQ84 PhosphoSite:Q9UQ84 DMDM:85700954
PaxDb:Q9UQ84 PRIDE:Q9UQ84 DNASU:9156 Ensembl:ENST00000348581
Ensembl:ENST00000366548 Ensembl:ENST00000518483 GeneID:9156
KEGG:hsa:9156 UCSC:uc001hzh.3 UCSC:uc021plk.1 GeneCards:GC01P242011
H-InvDB:HIX0022634 HGNC:HGNC:3511 MIM:606063 neXtProt:NX_Q9UQ84
PharmGKB:PA27923 InParanoid:Q9UQ84 OMA:EPIHVRK PhylomeDB:Q9UQ84
EvolutionaryTrace:Q9UQ84 GenomeRNAi:9156 NextBio:34349
ArrayExpress:Q9UQ84 Bgee:Q9UQ84 CleanEx:HS_EXO1
Genevestigator:Q9UQ84 GermOnline:ENSG00000174371 GO:GO:0043566
Uniprot:Q9UQ84
Length = 846
Score = 156 (60.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 66/238 (27%), Positives = 107/238 (44%)
Query: 28 VAVDLSYWIVQHETAI---KKNSVPKPHLRLTFF--RTINLFAKFGAFPVFVVDGTPSPL 82
VAVD W+ H+ AI +K + +P R F + +N+ G P+ V DG P
Sbjct: 27 VAVDTYCWL--HKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPS 84
Query: 83 KSQARLARFYRSTIDASTLP---VAEEGILVERNQTFLKCVQ-------ECVELLELFGM 132
K + +R R A+ L + EG + E + F + + + ++ G+
Sbjct: 85 KKEVERSR--RERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGV 142
Query: 133 PVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECYCIS 190
L A EA+A A LN G V A IT DSD FG K V+ + N E +
Sbjct: 143 DCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGM 202
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
+ G + M +L G D+ L+ ++GIGL A + ++ + +I+ ++ KIG+
Sbjct: 203 CRQLGDVFTEEKFRYMCILSGCDY-LSSLRGIGLAKACKVLRLANNPDIVKVIKKIGH 259
Score = 47 (21.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/99 (23%), Positives = 44/99 (44%)
Query: 504 FPKKVDH--FLQENERRELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFY---RSAKV 558
F +K D L EN ++ + ++ +ES+ E S Q S EF +A
Sbjct: 633 FRRKSDSPTSLPENNMSDVSQLKSEESSDDESHPLREEACSSQSQES-GEFSLQSSNASK 691
Query: 559 QSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARR 597
SQ S +++S+C + + ++ + S LS +++
Sbjct: 692 LSQCSSKDSDSEESDCNIKLLDSQSDQTSKLRLSHFSKK 730
>ZFIN|ZDB-GENE-040426-2828 [details] [associations]
symbol:exo1 "exonuclease 1" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006298 "mismatch
repair" evidence=ISS] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0048256 "flap endonuclease
activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019734 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
ZFIN:ZDB-GENE-040426-2828 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006298 GO:GO:0006310 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 EMBL:BC044187 IPI:IPI00614375
RefSeq:NP_998634.1 UniGene:Dr.17858 ProteinModelPortal:Q803U7
STRING:Q803U7 PRIDE:Q803U7 GeneID:406778 KEGG:dre:406778 CTD:9156
HOGENOM:HOG000112413 HOVERGEN:HBG081488 InParanoid:Q803U7
OrthoDB:EOG4M91QT NextBio:20818292 ArrayExpress:Q803U7
GO:GO:0048256 GO:GO:0045145 Uniprot:Q803U7
Length = 806
Score = 154 (59.3 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 61/239 (25%), Positives = 103/239 (43%)
Query: 24 RDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTFF--RTINLFAKFGAFPVFVVDGT 78
R + VAVD W+ H+ A +K + +P + + + +++ FG P+ V DG
Sbjct: 23 RGQTVAVDTYCWL--HKGAFSCAEKLAKGEPTDQYVSYCMKFVDMLLSFGVKPILVFDGR 80
Query: 79 PSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTFLKCVQ-------ECVELLELF 130
P K + +R R + + EG + E + F + V + +
Sbjct: 81 NLPSKQEVEKSRRERRQANLQKGKQLLREGKITEARECFTRSVNITPSMAHDVIRAARTR 140
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECYC 188
G+ + A EA+A A LN A IT DSD FG K V+ + + N E +C+
Sbjct: 141 GVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGCKKVILKMDKQGNGLEIEQCHL 200
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
G + M +L G D+ L + GIGL A + ++ + +IL ++ K+G
Sbjct: 201 GRCKSLGNIFTEEKFRYMCILSGCDY-LQSLYGIGLGKACKLLRMANNPDILKVIKKMG 258
>UNIPROTKB|G4MVT4 [details] [associations]
symbol:MGG_01800 "Flap structure-specific endonuclease"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00484
SMART:SM00485 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 EMBL:CM001232 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K15339 RefSeq:XP_003714807.1 ProteinModelPortal:G4MVT4
EnsemblFungi:MGG_01800T0 GeneID:2679379 KEGG:mgr:MGG_01800
Uniprot:G4MVT4
Length = 932
Score = 134 (52.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 38/112 (33%), Positives = 59/112 (52%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC-----IRPNT 180
++ LFG +A GEAEA CA L G VDA ++ D D +FG ++ +R +
Sbjct: 111 MIRLFGFQFHEAPGEAEAECALLQRRGIVDAVLSEDVDTIMFGCTRTLRNWSSEGVR-GS 169
Query: 181 KEP--FECYCISDIEAG-LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
KEP Y + I+A GL R+ ++ ++L+ G D+ GV G G+ A +
Sbjct: 170 KEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPGCGVKVACE 221
Score = 68 (29.0 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP 81
R R+A+D+S W Q + A + P R F+R L P+FV DG P
Sbjct: 31 RPLRIAIDISIWQFQIQAARGGANAPT---RTLFYRLARLLGH-SIQPIFVFDGPNKP 84
>UNIPROTKB|E2QWL7 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:AAEX03005244 RefSeq:XP_003639234.1 ProteinModelPortal:E2QWL7
Ensembl:ENSCAFT00000024978 GeneID:100855525 KEGG:cfa:100855525
NextBio:20863405 Uniprot:E2QWL7
Length = 836
Score = 151 (58.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 65/238 (27%), Positives = 107/238 (44%)
Query: 28 VAVDLSYWIVQHETAI---KKNSVPKPHLRLTFF--RTINLFAKFGAFPVFVVDGTPSPL 82
VAVD W+ H+ AI +K + +P + F + +N+ G PV + DG P
Sbjct: 27 VAVDTYCWL--HKGAIACAEKLARGEPTDKYVGFCMKFVNMLLSHGIKPVLIFDGCTLPS 84
Query: 83 KSQARLARFYRSTIDASTLP---VAEEGILVERNQTFLKCVQ-------ECVELLELFGM 132
K + +R R A+ L + EG + E + F + + + ++ G+
Sbjct: 85 KKEVEKSR--RERRQANLLKGKQLLREGKVSEARECFSRSINITHAMAHKVIKAARSQGV 142
Query: 133 PVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECYCIS 190
L A EA+A A LN G V A IT DSD FG K V+ + N E +
Sbjct: 143 DCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEIDQARLGM 202
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
+ G + M +L G D+ L+ ++GIGL A + ++ + +I+ ++ KIG+
Sbjct: 203 CRQLGDVFTEEKFRYMCILSGCDY-LSSLRGIGLAKACKVLRLANNPDIVKVIKKIGH 259
Score = 49 (22.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 25/104 (24%), Positives = 45/104 (43%)
Query: 504 FPKKVDHFLQENERRELKRKRTSSLRSEESNGKLE-------SPKSKGVQLSITEFYRSA 556
F ++ D +RRE+ S RS+ES + SP+S+ +++ +A
Sbjct: 621 FRRRTDPPTTLPDRREVSSMSQS--RSDESGDEAPPSRLAAWSPQSQE-STALSPHSLNA 677
Query: 557 KVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLL 600
SQ S ++DS+C + S P+LS+ ++ L
Sbjct: 678 SKLSQPSSKDSDSEDSDCNMKSFDDLGNPKSKPHLSQFLKKDTL 721
Score = 39 (18.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 493 TDENMKLVHS-AFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSK 543
+D NMK PK H Q ++ L R + L S L + K K
Sbjct: 693 SDCNMKSFDDLGNPKSKPHLSQFLKKDTLLRNKVPGLYKSSSVDSLSTTKIK 744
>GENEDB_PFALCIPARUM|PFD0420c [details] [associations]
symbol:PFD0420c "flap exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] HAMAP:MF_00614
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005739 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0004527 EMBL:AL844503 GO:GO:0004520 PANTHER:PTHR11081
SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853 KO:K04799
ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 156 (60.0 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 61/214 (28%), Positives = 94/214 (43%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEGILV 110
H+ R+I L G P++V DG P LK S+ R + EEG L
Sbjct: 65 HISGLMSRSIRLMEN-GLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLE 123
Query: 111 ERNQTFLKCV-------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + + V +E +LL L G+P+++A EAE+ CA L A T D+D
Sbjct: 124 EIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDAD 183
Query: 164 AFLFGAKCVVKCIRPNT-----KEPFEC---YCISDIEA-----GLGLKRKHLIAMSLLI 210
A +FG K +++ + N K Y +++I GL L I +L
Sbjct: 184 ALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILC 243
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFS--EDEILNI 242
G D+ + ++GIG TA ++ ++ E I NI
Sbjct: 244 GCDY-CDTIKGIGSKTAYNLIKEYNCIEKIIENI 276
Score = 39 (18.8 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 343 SKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLV 391
+K + +NF E ++ N + I W P E L FL+
Sbjct: 279 NKYQVPSNFRFQEARKSFI---NPNVLPKEDIKIDWNEPQIEELKHFLI 324
>UNIPROTKB|Q7K734 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:36329 "Plasmodium
falciparum 3D7" [GO:0004520 "endodeoxyribonuclease activity"
evidence=ISS] HAMAP:MF_00614 InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 InterPro:IPR023426 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 GO:GO:0005739 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0004527 EMBL:AL844503 GO:GO:0004520
PANTHER:PTHR11081 SUPFAM:SSF47807 HSSP:O93634 HOGENOM:HOG000193853
KO:K04799 ProtClustDB:PTZ00217 EMBL:AF093702 RefSeq:XP_001351399.1
ProteinModelPortal:Q7K734 IntAct:Q7K734 MINT:MINT-1729073
EnsemblProtists:PFD0420c:mRNA GeneID:812356
GenomeReviews:AL844503_GR KEGG:pfa:PFD0420c
EuPathDB:PlasmoDB:PF3D7_0408500 OMA:HTININS Uniprot:Q7K734
Length = 672
Score = 156 (60.0 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 61/214 (28%), Positives = 94/214 (43%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEGILV 110
H+ R+I L G P++V DG P LK S+ R + EEG L
Sbjct: 65 HISGLMSRSIRLMEN-GLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLE 123
Query: 111 ERNQTFLKCV-------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + + V +E +LL L G+P+++A EAE+ CA L A T D+D
Sbjct: 124 EIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDAD 183
Query: 164 AFLFGAKCVVKCIRPNT-----KEPFEC---YCISDIEA-----GLGLKRKHLIAMSLLI 210
A +FG K +++ + N K Y +++I GL L I +L
Sbjct: 184 ALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILC 243
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFS--EDEILNI 242
G D+ + ++GIG TA ++ ++ E I NI
Sbjct: 244 GCDY-CDTIKGIGSKTAYNLIKEYNCIEKIIENI 276
Score = 39 (18.8 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 343 SKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLV 391
+K + +NF E ++ N + I W P E L FL+
Sbjct: 279 NKYQVPSNFRFQEARKSFI---NPNVLPKEDIKIDWNEPQIEELKHFLI 324
>MGI|MGI:1349427 [details] [associations]
symbol:Exo1 "exonuclease 1" species:10090 "Mus musculus"
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=ISA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006298
"mismatch repair" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008409
"5'-3' exonuclease activity" evidence=ISA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0035312 "5'-3'
exodeoxyribonuclease activity" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=IDA] [GO:0045145
"single-stranded DNA specific 5'-3' exodeoxyribonuclease activity"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=ISO] [GO:0051908 "double-stranded
DNA specific 5'-3' exodeoxyribonuclease activity" evidence=ISO]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019974 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 PROSITE:PS00841
PROSITE:PS00842 SMART:SM00279 SMART:SM00484 SMART:SM00485
MGI:MGI:1349427 GO:GO:0005634 GO:GO:0007126 GO:GO:0002455
GO:GO:0046872 GO:GO:0006298 GO:GO:0045190 eggNOG:COG0258
GeneTree:ENSGT00510000047676 PANTHER:PTHR11081 SUPFAM:SSF47807
GO:GO:0016446 KO:K10746 CTD:9156 HOGENOM:HOG000112413
HOVERGEN:HBG081488 OrthoDB:EOG4M91QT GO:GO:0048256 GO:GO:0045145
GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566 EMBL:AJ238213 EMBL:AK028728
EMBL:AK166425 EMBL:BC006671 IPI:IPI00331190 RefSeq:NP_036142.2
UniGene:Mm.283046 ProteinModelPortal:Q9QZ11 SMR:Q9QZ11
STRING:Q9QZ11 PhosphoSite:Q9QZ11 PRIDE:Q9QZ11
Ensembl:ENSMUST00000039725 GeneID:26909 KEGG:mmu:26909
UCSC:uc007dtu.2 InParanoid:Q9QZ11 NextBio:304777 Bgee:Q9QZ11
CleanEx:MM_EXO1 Genevestigator:Q9QZ11 GermOnline:ENSMUSG00000039748
Uniprot:Q9QZ11
Length = 837
Score = 159 (61.0 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 63/240 (26%), Positives = 106/240 (44%)
Query: 24 RDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTFF--RTINLFAKFGAFPVFVVDGT 78
+ + VAVD W+ H+ AI +K + +P R F + +N+ +G P+ + DG
Sbjct: 23 KGQAVAVDTYCWL--HKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSYGVKPILIFDGC 80
Query: 79 PSPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQTFLKCVQ-------ECVELLELF 130
P K + +R R + + EG + E F + + + ++
Sbjct: 81 TLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARDCFARSINITHAMAHKVIKAARAL 140
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECYC 188
G+ L A EA+A A LN G V A IT DSD FG K V+ + N E +
Sbjct: 141 GVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARL 200
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
+ G + M +L G D+ L ++GIGL A + ++ + +I+ ++ KIG+
Sbjct: 201 GMCKQLGDVFTEEKFRYMCILSGCDY-LASLRGIGLAKACKVLRLANNPDIVKVIKKIGH 259
Score = 40 (19.1 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 560 SQEKSGADLAKDSNCQVDRISKENRRVSSPNLSK 593
S SG++ + +N +D ++N + P+ SK
Sbjct: 687 SSRDSGSEESDCNNKSLDNQGEQNSKQHLPHFSK 720
Score = 40 (19.1 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 257 DIKSTEEAVSHSDESMPMIKSSHC--SFCGH--PGTKRAHFKFSC 297
D+ + E+ +S ++MP SH G PGT K C
Sbjct: 331 DVNTFEQIDDYSPDTMPAHSRSHSWNEKAGQKPPGTNSIWHKNYC 375
>ASPGD|ASPL0000035217 [details] [associations]
symbol:AN3186 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00485
GO:GO:0003677 GO:GO:0006281 EMBL:BN001306 GO:GO:0090305
GO:GO:0004519 EMBL:AACD01000052 eggNOG:COG0258 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K15339 RefSeq:XP_660790.1
ProteinModelPortal:Q5B8E4 EnsemblFungi:CADANIAT00009883
GeneID:2874333 KEGG:ani:AN3186.2 HOGENOM:HOG000198967
OrthoDB:EOG4QZBVF Uniprot:Q5B8E4
Length = 822
Score = 112 (44.5 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 39/130 (30%), Positives = 59/130 (45%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP-- 183
L++LF P A GEAEA C++L G VDA ++ D DA +FG+ V
Sbjct: 109 LIDLFRFPRHDAPGEAEAECSRLQMAGVVDAVMSNDVDALMFGSGFTVMNFSKEAGSGAG 168
Query: 184 ----FECYCISD-IEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ-NFSED 237
Y + D ++ + L R +I ++L G D+ +GV G A + F +D
Sbjct: 169 GATHVTSYRMGDGADSNVKLDRPGMILFAMLSGGDYLPSGVPKCGSKLAAEIATAGFGKD 228
Query: 238 EILNILHKIG 247
+L L G
Sbjct: 229 -LLEALEADG 237
Score = 86 (35.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP 81
R R+AVD+S W+ Q + P LR FFR + + A P+FV DG P
Sbjct: 31 RPIRIAVDISIWLFQIQAG---RGGKNPELRTLFFRLLKILA-LPIHPLFVYDGKDKP 84
>UNIPROTKB|F5H1Y3 [details] [associations]
symbol:FEN1 "Flap endonuclease 1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007613 "memory" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00485 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0030145
GO:GO:0004527 GO:GO:0090305 PANTHER:PTHR11081 GO:GO:0048256
HGNC:HGNC:3650 ChiTaRS:FEN1 EMBL:AP002380 IPI:IPI01009939
ProteinModelPortal:F5H1Y3 SMR:F5H1Y3 Ensembl:ENST00000535723
ArrayExpress:F5H1Y3 Bgee:F5H1Y3 Uniprot:F5H1Y3
Length = 165
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 44/137 (32%), Positives = 58/137 (42%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCA 146
G+P L A EAEA CA
Sbjct: 148 MGIPYLDAPSEAEASCA 164
>UNIPROTKB|H0YCG6 [details] [associations]
symbol:GEN1 "Flap endonuclease GEN homolog 1" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR006084
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 PANTHER:PTHR11081
EMBL:AC093731 HGNC:HGNC:26881 EMBL:AC097377 Ensembl:ENST00000528873
Bgee:H0YCG6 Uniprot:H0YCG6
Length = 290
Score = 125 (49.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 45/194 (23%), Positives = 83/194 (42%)
Query: 262 EEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSL 321
E + + S + + K +HCS C HPG+ + H + C C +D C +P ++ C
Sbjct: 14 ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKY--C--EPHDYEYCCP- 68
Query: 322 CNKNRKEKEQK--KHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWG 379
C +R E +++ + EN + K FP E++ +L + I +
Sbjct: 69 CEWHRTEHDRQLSEVEN---NIKKKACCCEGFPFHEVIQEFLLNKDKLVKV-----IRYQ 120
Query: 380 SPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVK 439
P + F + W Y +K+L +L T Y +M + + Q + I + +
Sbjct: 121 RPDLLLFQRFTLEKMEWPNHYACEKLLVLL-THY--DMIERKLGSRNSNQLQPIRIVKTR 177
Query: 440 IRYGHQSYVVKWKK 453
IR G + ++W+K
Sbjct: 178 IRNGVHCFEIEWEK 191
Score = 55 (24.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 491 LLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 207 LLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 248
>DICTYBASE|DDB_G0291570 [details] [associations]
symbol:exo1 "5'3'-exonuclease N- and
I-domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR006086
InterPro:IPR008918 InterPro:IPR019734 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 dictyBase:DDB_G0291570 GO:GO:0005634
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006310 GO:GO:0004519
GO:GO:0008409 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_635308.1 ProteinModelPortal:Q54ED2
EnsemblProtists:DDB0232997 GeneID:8628252 KEGG:ddi:DDB_G0291570
OMA:KSQANIC Uniprot:Q54ED2
Length = 1046
Score = 139 (54.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 71/258 (27%), Positives = 107/258 (41%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MG+ G L P + + +KRVA+D W+ + + + +P + F
Sbjct: 1 MGISGLL-PALSPVTKAIHVKDYANKRVAIDGYSWLHKGAYSCSQEIVLGIPTRNYINYF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSP---LKSQARLARF--YRSTIDASTLPVAEEGILVER 112
I + + PV + DG P P LK Q RL Y++ A L EG +
Sbjct: 60 ISRIKMLISYKVIPVVIFDGGPLPNKKLKEQERLRHREEYKNKAKAYLL----EGNKSQA 115
Query: 113 NQTFLKCVQ---ECVELL--ELFGMPV--LKAKGEAEALCAQLNSEGYVDACITADSDAF 165
N F K V LL EL + V L A EA+A L+ G VDA IT DSD
Sbjct: 116 NICFQKAVDITPRMAFLLIKELRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLV 175
Query: 166 LFGAKCVV-KCIRPNTKEPFECY----CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
FGA ++ K + + + C D + + L M +L G D+ L +
Sbjct: 176 AFGATHIIFKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDY-LPSLS 234
Query: 221 GIGLDTALQFVQNFSEDE 238
G+GL T+ + ++ + E
Sbjct: 235 GMGLKTSFKLLKQHRDIE 252
Score = 56 (24.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 27/129 (20%), Positives = 56/129 (43%)
Query: 468 DSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRK---R 524
D + L + + ++ DC F D++ + + +K D F+ +++ + K + +
Sbjct: 499 DESIILSNNLNNQENVLESDCEFD-DDDDQRGIDVDDSEKKDSFVLDSDYEDEKEEEEVK 557
Query: 525 TSSLRSEESNGKLESPKSKGVQLSITEFYRSAK---VQSQEKSGADLAKDSNCQVDRISK 581
+S+ S S S K K +S ++F+ S++ ++S + G D DS S
Sbjct: 558 SSTFNSSSSISSGNSSKIKKTLVS-SKFFVSSESSVLESDDDDGGDDDDDSFNHNQNFSS 616
Query: 582 ENRRVSSPN 590
+ PN
Sbjct: 617 SGNNIQ-PN 624
>UNIPROTKB|F1S8P2 [details] [associations]
symbol:EXO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0048256 "flap
endonuclease activity" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0045145 "single-stranded DNA specific
5'-3' exodeoxyribonuclease activity" evidence=IEA] [GO:0043566
"structure-specific DNA binding" evidence=IEA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0002455 "humoral immune response mediated by circulating
immunoglobulin" evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0002455 GO:GO:0006298
GO:GO:0090305 GO:GO:0045190 GeneTree:ENSGT00510000047676
PANTHER:PTHR11081 SUPFAM:SSF47807 GO:GO:0016446 KO:K10746 CTD:9156
GO:GO:0048256 GO:GO:0045145 GO:GO:0051908 OMA:EPIHVRK GO:GO:0043566
EMBL:FP236465 EMBL:FP236767 RefSeq:XP_003130603.3
Ensembl:ENSSSCT00000011887 GeneID:100512301 KEGG:ssc:100512301
Uniprot:F1S8P2
Length = 836
Score = 154 (59.3 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 64/238 (26%), Positives = 106/238 (44%)
Query: 28 VAVDLSYWIVQHETAI---KKNSVPKPHLRLTFF--RTINLFAKFGAFPVFVVDGTPSPL 82
VAVD W+ H+ A+ +K + +P + F + +N+ G P+ V DG P
Sbjct: 27 VAVDTYCWL--HKGAVACAEKLAKGEPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPS 84
Query: 83 KSQARLARFYRSTIDASTLP---VAEEGILVERNQTFLKCVQ-------ECVELLELFGM 132
K + +R R A+ L + EG + E + F + + ++ G+
Sbjct: 85 KKEVEKSR--RERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHSVIKAARAQGV 142
Query: 133 PVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECYCIS 190
L A EA+A A LN G V A IT DSD FG K V+ + N E +
Sbjct: 143 DCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGK 202
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
+ G + M +L G D+ L+ ++GIGL A + ++ + +I+ ++ KIG+
Sbjct: 203 CKQLGDVFTEEKFRYMCILSGCDY-LSSLRGIGLAKACKVLRLANNPDIVKVIKKIGH 259
Score = 37 (18.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 526 SSLRSEESN-GKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENR 584
S L+ S G + +KG+ L + + +S+E S ADL + + +K+N
Sbjct: 388 SRLKENSSTVGIKQVISTKGLNLP-RKSSSIKRPRSEELSEADLLAQYSTSFTKKTKKNS 446
Query: 585 RVSSPNLSKS 594
+ +L+ S
Sbjct: 447 CEGNKSLNSS 456
>CGD|CAL0003631 [details] [associations]
symbol:EXO1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR020045
Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853 SMART:SM00279
SMART:SM00484 SMART:SM00485 CGD:CAL0003631 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807
KO:K10746 RefSeq:XP_716765.1 RefSeq:XP_716825.1
ProteinModelPortal:Q5A520 STRING:Q5A520 GeneID:3641527
GeneID:3641583 KEGG:cal:CaO19.8541 KEGG:cal:CaO19.926
Uniprot:Q5A520
Length = 699
Score = 138 (53.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 71/281 (25%), Positives = 119/281 (42%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLR-LT 56
MGV G +L+ L+ R + +A+D W+ H + ++ + KP +T
Sbjct: 1 MGVNGLL-QILREIQDPCSLERYRGQTLAIDTYGWL--HRALVSCAEELCLGKPTRNYIT 57
Query: 57 -FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQT 115
I + FG P FV DG P K + R + +A L AE+ I +
Sbjct: 58 AILNKIQMLNHFGITPYFVFDGASLPTKQETNRERQLKRQ-EAKEL--AEKYIAANNRKL 114
Query: 116 ----FLKCVQECVELL-----ELFGMPV--LKAKGEAEALCAQLNSEGYVDACITADSDA 164
F+K ++ EL + + + A EA+ L G VD ++ DSD
Sbjct: 115 AYKQFMKAAYVTSQMAKSVMCELDNLSIKYIVAPYEADPQMVYLEKMGIVDGILSEDSDL 174
Query: 165 FLFGAKCVVK-------CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN 217
+FG K ++ C+ N ++ F+ + +I + L +++L G D+
Sbjct: 175 LIFGCKKLITKLKDDGTCVEIN-RDKFDK--VKEIPYLNQYNMEQLRLVAMLSGCDYT-K 230
Query: 218 GVQGIGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGD 257
GV GIGL TA Q V+ ++ +I+ L +G IP + D
Sbjct: 231 GVPGIGLKTAFQLVRKYNNFTKIMIALRSMGK-KIPDTFSD 270
>UNIPROTKB|Q9HD60 [details] [associations]
symbol:ERCC5 "DNA repair protein-complementing XP-G cells"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001044
InterPro:IPR006084 InterPro:IPR006085 InterPro:IPR019974
Pfam:PF00752 PRINTS:PR00066 PRINTS:PR00853 PROSITE:PS00841
SMART:SM00485 GO:GO:0005634 GO:GO:0003697 GO:GO:0090305
GO:GO:0004519 GO:GO:0006289 EMBL:AL157769 PANTHER:PTHR11081
EMBL:AF255431 EMBL:AF255433 EMBL:AF255434 EMBL:AF255435
EMBL:AF255436 UniGene:Hs.258429 HGNC:HGNC:3437
PANTHER:PTHR11081:SF1 IPI:IPI01010865 SMR:Q9HD60 STRING:Q9HD60
Ensembl:ENST00000535557 HOVERGEN:HBG054810 Uniprot:Q9HD60
Length = 232
Score = 129 (50.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 42/121 (34%), Positives = 57/121 (47%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ PHL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q + R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Score = 38 (18.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 502 SAFPKKVDHFLQENERRELKRKRT 525
S+ P +V H + + + KR+RT
Sbjct: 194 SSLPPEVKHEILTDMKEFTKRRRT 217
>UNIPROTKB|I3LHP7 [details] [associations]
symbol:I3LHP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR001044 InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR019974 Pfam:PF00752 PRINTS:PR00066
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00485 GO:GO:0005634
GO:GO:0003697 GO:GO:0090305 GO:GO:0004519 GO:GO:0006289
PANTHER:PTHR11081 PANTHER:PTHR11081:SF1
GeneTree:ENSGT00640000091542 EMBL:CU469267
Ensembl:ENSSSCT00000025898 Uniprot:I3LHP7
Length = 159
Score = 115 (45.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 40/121 (33%), Positives = 53/121 (43%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVNPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R R + E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDLATDDSKKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>TAIR|locus:2013633 [details] [associations]
symbol:AT1G29630 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR006084 InterPro:IPR006085
InterPro:IPR006086 InterPro:IPR008918 InterPro:IPR019974
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 EMBL:AC068667 eggNOG:COG0258
PANTHER:PTHR11081 SUPFAM:SSF47807 EMBL:AY140055 IPI:IPI00532766
IPI:IPI00852240 PIR:E86419 RefSeq:NP_001077624.1 RefSeq:NP_174256.2
UniGene:At.40698 HSSP:P39748 ProteinModelPortal:Q8L6Z7 SMR:Q8L6Z7
PRIDE:Q8L6Z7 EnsemblPlants:AT1G29630.2 GeneID:839840
KEGG:ath:AT1G29630 TAIR:At1g29630 HOGENOM:HOG000064704
InParanoid:Q8L6Z7 KO:K10746 OMA:LEHEANG PhylomeDB:Q8L6Z7
ProtClustDB:CLSN2699050 Genevestigator:Q8L6Z7 Uniprot:Q8L6Z7
Length = 735
Score = 136 (52.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 66/244 (27%), Positives = 103/244 (42%)
Query: 28 VAVDLSYWIVQHETAIK------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP 81
VAVD W+ H+ A+ K K H++ R +NL G P+ V DG P P
Sbjct: 27 VAVDTYSWL--HKGALSCSRELCKGLPTKRHIQYCMHR-VNLLRHHGVKPIMVFDGGPLP 83
Query: 82 LK--SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ-------ECVELLELFGM 132
+K + + AR + + A L G + + K V E +++L +
Sbjct: 84 MKLEQENKRARSRKENL-ARALEHEANGNSSAAYECYSKAVDISPSIAHELIQVLRQENV 142
Query: 133 PVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKEPFECYCI-S 190
+ A EA+A A L VDA IT DSD FG + + K + F+ +
Sbjct: 143 DYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCLRIIFKMDKFGHGVEFQASKLPK 202
Query: 191 DIEAGL-GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKIGN 248
+ + L G + L+ M +L G D+ L + G+GL A + F S D ++ L K
Sbjct: 203 NKDLSLSGFSSQMLLEMCILSGCDY-LQSLPGMGLKRAHALITKFKSYDRVIKHL-KYST 260
Query: 249 GDIP 252
+P
Sbjct: 261 VSVP 264
>ASPGD|ASPL0000033989 [details] [associations]
symbol:AN3035 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 SMART:SM00279 SMART:SM00484
SMART:SM00485 GO:GO:0005634 GO:GO:0003677 GO:GO:0006281
EMBL:BN001306 EMBL:AACD01000051 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 eggNOG:COG0258 OrthoDB:EOG44QX8J PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 RefSeq:XP_660639.1
ProteinModelPortal:Q5B8U5 STRING:Q5B8U5
EnsemblFungi:CADANIAT00010044 GeneID:2874467 KEGG:ani:AN3035.2
HOGENOM:HOG000196065 OMA:KTAYRSI Uniprot:Q5B8U5
Length = 761
Score = 130 (50.8 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 69/273 (25%), Positives = 114/273 (41%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSV-PKP---HLRLT 56
MG+ G LLK + L + + VD W+ + A + V +P H+
Sbjct: 1 MGIKG-LHGLLKSIQKPCHLKKFSGQTLGVDAYGWLHRGTVACAVDLVLDRPTTKHIDFV 59
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA--EEGILVERNQ 114
R + + FG P V DG P KS L R R ++ TL + +G E Q
Sbjct: 60 LSR-VRMLLFFGVKPYLVFDGDNLPSKSGTELDRQQRRH-ESKTLGMELYRKGRTAEAYQ 117
Query: 115 TFLKCV-------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
K V ++ +E L+ + + A EA+A L G++D I+ DSD +F
Sbjct: 118 ELQKAVDVTPLMARQLIEELKKLDIQYVVAPYEADAQLVYLEKHGFIDGIISEDSDLLVF 177
Query: 168 GAKCVV-------KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
GAK ++ + I N + C +S + G M ++ G D+ L +
Sbjct: 178 GAKRLLSKLDQHGELIEINRADFTACREVSFV----GWTDADFRRMCIMSGCDY-LPNIA 232
Query: 221 GIGLDTALQFVQNF-SEDEILNILHKIGNGDIP 252
+GL TA + ++ + S ++ L +L G +P
Sbjct: 233 RVGLKTAYRSIRKYKSVEKALRMLQFEGPYHVP 265
>TAIR|locus:2194085 [details] [associations]
symbol:AT1G18090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0016788 "hydrolase activity,
acting on ester bonds" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00842 SMART:SM00279 SMART:SM00484
SMART:SM00485 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0258 PANTHER:PTHR11081 SUPFAM:SSF47807 KO:K10746
UniGene:At.48205 UniGene:At.70260 EMBL:AY050420 EMBL:AY113038
IPI:IPI00541706 RefSeq:NP_564047.1 ProteinModelPortal:Q94A33
SMR:Q94A33 PaxDb:Q94A33 PRIDE:Q94A33 EnsemblPlants:AT1G18090.1
GeneID:838389 KEGG:ath:AT1G18090 TAIR:At1g18090
HOGENOM:HOG000131774 InParanoid:Q94A33 OMA:ETFETTE
ProtClustDB:CLSN2687850 Genevestigator:Q94A33 Uniprot:Q94A33
Length = 577
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 59/229 (25%), Positives = 98/229 (42%)
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQA--RLARFYRSTIDASTLPVAEEGILVERNQ 114
F +NL + PV V+DG P K+ R ++ DA+ + + +EG + +
Sbjct: 62 FMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKL-KEGNVAAATE 120
Query: 115 TFLKCVQ-------ECVELLELFGMPVLKAKGEAEALCAQLNS----EGYVDACITADSD 163
F + V + +++L+ + + A EA+A A L+S +G + A IT DSD
Sbjct: 121 LFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSD 180
Query: 164 AFLFGAKCVV-KCIRPNTKEPF---ECYCISDIEAGL-GLKRKHLIAMSLLIGNDHDLNG 218
+G K V+ K R E + D + ++ AM +L G D L
Sbjct: 181 LLAYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDF-LPS 239
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKIGNGD-IPQYWGDIKSTEEAVS 266
V G+G+ A F+ + E++ K G +P + S EAVS
Sbjct: 240 VPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSS--SFTEAVS 286
>WB|WBGene00009731 [details] [associations]
symbol:exo-1 species:6239 "Caenorhabditis elegans"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867 PRINTS:PR00853
SMART:SM00279 SMART:SM00484 SMART:SM00485 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0004518 EMBL:Z93382
eggNOG:COG0258 GeneTree:ENSGT00510000047676 PANTHER:PTHR11081
SUPFAM:SSF47807 KO:K10746 PIR:T22235 RefSeq:NP_499770.1
ProteinModelPortal:O62245 SMR:O62245 IntAct:O62245 MINT:MINT-117279
STRING:O62245 PaxDb:O62245 EnsemblMetazoa:F45G2.3 GeneID:176765
KEGG:cel:CELE_F45G2.3 UCSC:F45G2.3 CTD:176765 WormBase:F45G2.3
HOGENOM:HOG000022038 InParanoid:O62245 OMA:IHMGEET NextBio:893914
Uniprot:O62245
Length = 639
Score = 129 (50.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 65/265 (24%), Positives = 108/265 (40%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ G +K R + LR K VA+D+S + + T + + ++
Sbjct: 1 MGISGLL-PFVKNACRKGNILELRGKSVAIDVSCLLHRGLTGCM-DKIHMGEETQSYVNY 58
Query: 61 INLFAK----FGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQT 115
+N + K G V V DG P P K R R + +G+ E T
Sbjct: 59 VNKYVKELLGMGCHVVMVFDGRPLPAKKGTNEERRELREKRKEHAEMLLAKGLEREARDT 118
Query: 116 FLKCVQECVELLE--------LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
+ +++E + + ++ A EA+A A L E VDA IT DSD +F
Sbjct: 119 YRLATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLIVF 178
Query: 168 GAKCVVKCIRPNTKE--PFE-CYCISDIEAGLGLKRKHLIA---MSLLIGNDHDLNGVQG 221
G + + + T E +E C + LG + + + +L G D+ G+ G
Sbjct: 179 GCEMIYFKWQSATGECSVYEKCNLKNCFTGELGGDKFDFVKFRRICILSGCDYLQAGLPG 238
Query: 222 IGLDTALQFVQNFSEDEILNILHKI 246
+GL TA +F S ++ +L K+
Sbjct: 239 VGLSTAAKFFSMTSIKDLRTLLRKV 263
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 25/106 (23%), Positives = 45/106 (42%)
Query: 445 QSYVVKWKKAASAISGVKYTAPVD--SDLHLEEFMEYPQ------IHVDGDCWFLLTDEN 496
+ ++ +K AI K VD +D+ L+++ E P + V D + E
Sbjct: 439 KQFMADIEKEKKAIKKRKNAPQVDYNADVLLKKYAEPPPEKRQKILEVIDDDFSEFFQEK 498
Query: 497 MK--LVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESP 540
+K S +KV++ +E + + RK S+ S K +SP
Sbjct: 499 VKENTKESVAEEKVENSNEELKPPPILRKAVSTPDSARKTHKFQSP 544
>SGD|S000005559 [details] [associations]
symbol:EXO1 "5'-3' exonuclease and flap-endonuclease"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA;IPI] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0031292 "gene conversion
at mating-type locus, DNA double-strand break processing"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IGI] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IMP] [GO:0000729 "DNA double-strand break
processing" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IGI] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] InterPro:IPR006084
InterPro:IPR006085 InterPro:IPR006086 InterPro:IPR008918
InterPro:IPR019974 InterPro:IPR020045 Pfam:PF00752 Pfam:PF00867
PRINTS:PR00853 PROSITE:PS00841 PROSITE:PS00842 SMART:SM00279
SMART:SM00484 SMART:SM00485 SGD:S000005559 GO:GO:0005634
EMBL:X87331 EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006298
GO:GO:0000706 GO:GO:0017108 GO:GO:0031292 GO:GO:0008409
GO:GO:0031860 eggNOG:COG0258 GeneTree:ENSGT00510000047676
OrthoDB:EOG44QX8J PANTHER:PTHR11081 SUPFAM:SSF47807 BRENDA:3.1.11.1
KO:K10746 EMBL:U86134 EMBL:Z74941 EMBL:S69545 PIR:S62169
RefSeq:NP_014676.1 ProteinModelPortal:P39875 SMR:P39875
DIP:DIP-2421N IntAct:P39875 MINT:MINT-553509 STRING:P39875
EnsemblFungi:YOR033C GeneID:854198 KEGG:sce:YOR033C CYGD:YOR033c
HOGENOM:HOG000112416 NextBio:976029 Genevestigator:P39875
GermOnline:YOR033C Uniprot:P39875
Length = 702
Score = 121 (47.7 bits), Expect = 0.00078, P = 0.00078
Identities = 76/285 (26%), Positives = 119/285 (41%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---KNSVPKPHLR-LT 56
MG+ G LKP L + +A+D W+ H A + ++ KP + L
Sbjct: 1 MGIQGLL-PQLKPIQNPVSLRRYEGEVLAIDGYAWL--HRAACSCAYELAMGKPTDKYLQ 57
Query: 57 FF-RTINLFAKFGAFPVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEGILVERNQ 114
FF + +L F P V DG P+K S R R A + G
Sbjct: 58 FFIKRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMD 117
Query: 115 TFLKCVQ------ECVELL-ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
F KCV +C+ +L G+ + A EA++ L + V I+ DSD +F
Sbjct: 118 YFQKCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVF 177
Query: 168 GAKCVVKCIRPNTKEPFECYCISDI-----EAGLG-LKRKHLIAMSLLIGNDHDLNGVQG 221
G + ++ + + E E C + + LG L + +I M L G D+ NG+
Sbjct: 178 GCRRLITKLN-DYGECLEI-CRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYT-NGIPK 234
Query: 222 IGLDTALQFVQNFSEDE-ILNILHKIGNGDIPQYWGDIKSTEEAV 265
+GL TA++ V+ F+ E I+ + + G IP + I E AV
Sbjct: 235 VGLITAMKLVRRFNTIERIILSIQREGKLMIPDTY--INEYEAAV 277
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 602 602 0.00086 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 82
No. of states in DFA: 625 (66 KB)
Total size of DFA: 372 KB (2183 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.27u 0.08s 56.35t Elapsed: 00:00:03
Total cpu time: 56.29u 0.08s 56.37t Elapsed: 00:00:03
Start: Fri May 10 12:39:49 2013 End: Fri May 10 12:39:52 2013