BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044842
(602 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255541446|ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
gi|223548967|gb|EEF50456.1| DNA binding protein, putative [Ricinus communis]
Length = 609
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/615 (65%), Positives = 475/615 (77%), Gaps = 21/615 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGGKFWD+LKPY R EG DFLR+KRVA+DLSYWIVQHETAIK + KPHLRLTFFRT
Sbjct: 1 MGVGGKFWDILKPYTRHEGPDFLREKRVAIDLSYWIVQHETAIK-SYARKPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGAFPVFVVDGTPSPLKS+AR++RF+RS+ ID+S LP EEG+ VERN FLKC
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLKSRARISRFFRSSGIDSSVLPTPEEGVSVERNGAFLKC 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V+ECVELLELFGMPVLKA GEAEALCAQLNS+G VDACITADSDAFLFGAKCV+K I+PN
Sbjct: 120 VKECVELLELFGMPVLKANGEAEALCAQLNSQGLVDACITADSDAFLFGAKCVIKSIKPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
+KEPFECY +SDIE+GL LKRKHLIA++LL+GNDHDLNGVQGIG+DTAL+FVQ F EDEI
Sbjct: 180 SKEPFECYQMSDIESGLALKRKHLIAIALLVGNDHDLNGVQGIGVDTALRFVQTFHEDEI 239
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
LN L +IG G+ + G + E+ + E+ K SHCSFCGHPG+KRAHFK SCEY
Sbjct: 240 LNCLREIGKGNTNIFLGVSRVVEDLMIDPHENSLKSKISHCSFCGHPGSKRAHFKSSCEY 299
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C N N EGC KK F+CNC CNK+RK KE++K ENW IKVC K+ +E NFPND+I+ M
Sbjct: 300 CGNSNGEGCTKKSGAFRCNCGSCNKDRKAKEEQKRENWQIKVCDKMFMEPNFPNDDIIEM 359
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
YLC N+ FT D +SWGSP T+MLVDFL +H+ W PSYIRQ++LP+LSTIYLR+MA
Sbjct: 360 YLCNNHAEFTEDDDTCLSWGSPNTDMLVDFLAFHKLWHPSYIRQRILPVLSTIYLRDMAA 419
Query: 420 NPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISG---VKYTAPVD-------- 468
P + LL GQYEFDSI+R+K+RYGH+SYV+KWKKAA+ IS + +D
Sbjct: 420 KPEKALLYGQYEFDSIQRIKVRYGHESYVIKWKKAANTISSNICINIVEELDKHQEDIVK 479
Query: 469 SDLHLEEFMEY--PQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTS 526
+D +++ EY P+ +VD CWFLLTDENM LV +AFP VD FL+E E++E KR+ +S
Sbjct: 480 TDESIDQLEEYNVPKSYVDDGCWFLLTDENMDLVQNAFPDAVDKFLKEKEQKESKRRLSS 539
Query: 527 SLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRV 586
S K ES KSKGVQL+ITEFYRS KVQ G + A S Q D IS E R++
Sbjct: 540 STE------KSESVKSKGVQLNITEFYRSTKVQFAASGGEEQADCSENQDDVISTEKRKI 593
Query: 587 SSPNLSKSARRRLLF 601
SS NL KS RRRLLF
Sbjct: 594 SSSNLPKSVRRRLLF 608
>gi|225453885|ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
gi|296089141|emb|CBI38844.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/668 (61%), Positives = 473/668 (70%), Gaps = 69/668 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FW+LLKPYAR EG D++R+KRVAVDLS+WIVQ ETA K N V PHLRLTFFRT
Sbjct: 1 MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQETATKAN-VRNPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGAFPVFVVDGTPSPLKSQAR+ARF+R S ID S LPV EEG+ VERN F +
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLKSQARIARFFRGSGIDLSGLPVVEEGVSVERNAEFSRR 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
VQECVELLEL G+PVLKA+ EAEALCAQLNSEG+VDACITADSDAFLFGAKCV+KC+RPN
Sbjct: 120 VQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCLRPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
KEP ECY +SDIE+GLGLKRKHLIA+SLL+GND+DLNGVQGIGLDTA++FVQ FSEDEI
Sbjct: 180 CKEPLECYHMSDIESGLGLKRKHLIAISLLVGNDYDLNGVQGIGLDTAVRFVQGFSEDEI 239
Query: 240 LNILHKIGNG-----------------------------------------------DIP 252
LN L + GNG D
Sbjct: 240 LNRLQEKGNGATVFDGAVKSMDDSIPCLDEKSPRPKVPHCSTFPRKGCLEKPEGFACDCS 299
Query: 253 QYWGDIKSTEEAVSHSDESMPMI-------KSSHCSFCGHPGTKRAHFKFSCEYCINDNN 305
D K E+ D+S+P + K HCS CGHPG K++H KFSC++C
Sbjct: 300 TSDADHKEKEQKKQEMDDSIPSLDERSPRPKVPHCSICGHPGRKKSHLKFSCDFCGTFPR 359
Query: 306 EGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENN 365
GCL+KP+GF C+CS C+ +RKEK QKK ENW ++VC KIA+E NFPN+EI+ +YL N+
Sbjct: 360 RGCLEKPEGFVCDCSTCDMDRKEKAQKKQENWQLRVCKKIAMEQNFPNNEIIELYLSNNH 419
Query: 366 GTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTL 425
G FT DGP ISW SP TE+LVDFL YHQ W+PSYIRQ+MLPMLSTI+ RE A NP TL
Sbjct: 420 GHFTEKDGPHISWESPKTEVLVDFLAYHQHWEPSYIRQRMLPMLSTIFFREKALNPTNTL 479
Query: 426 LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFME------- 478
L GQYEFDSI+RVK+R+GHQ +VVKWKKA A++ V YT P DSD+ E+ E
Sbjct: 480 LYGQYEFDSIQRVKVRFGHQFFVVKWKKAVHAMASVAYTIPGDSDIEQEKLTEVDESIDL 539
Query: 479 -----YPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEES 533
PQIHVD CWFLLTDENM LV +AFP++V+ FL E E +E KR+ S LRSE
Sbjct: 540 LDECNVPQIHVDDGCWFLLTDENMDLVRAAFPEEVNRFLLEKELKESKRRNKSGLRSEGV 599
Query: 534 NGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSK 593
+SPKSKGVQLSITEFYRSAKV EK D A +S+ Q S E R+ S LSK
Sbjct: 600 EEMPDSPKSKGVQLSITEFYRSAKVIFHEKP-EDSAGNSDAQGRETSTEKRKASDSKLSK 658
Query: 594 SARRRLLF 601
S RRRLLF
Sbjct: 659 SVRRRLLF 666
>gi|357507117|ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
gi|355498862|gb|AES80065.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 612
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/615 (62%), Positives = 469/615 (76%), Gaps = 16/615 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FW+LLKPY+R EG DFLR+KRVA+DLS+WIVQH AIK + V KPHLRLTFFRT
Sbjct: 1 MGVGGNFWELLKPYSRNEGFDFLRNKRVAIDLSFWIVQHNNAIKTH-VKKPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGAFPVFVVDGTPSPLKSQAR+ARF+RS+ I++++LPVAEEG+ RN TF +C
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRNSTFSRC 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
VQECVEL +L G+PVLKAKGEAEALCAQLNSEG+VDACIT DSDAFLFGAKC++K PN
Sbjct: 120 VQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFSPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
+KEPFECY +SDIEAGLGLKRKHLIA+SLL+GNDHDL+GVQGIG+D+AL+FVQ F ED+I
Sbjct: 180 SKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFGEDDI 239
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
LN LH+IG G+ Q DIK+ E D + P K +HCSFCGHPG KR H KFSCE+
Sbjct: 240 LNRLHEIGKGNAFQVPIDIKAEENM--DIDGNSPNTKQTHCSFCGHPGNKRDHMKFSCEF 297
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C+ D+NEGCLKKP+GFKC+C+ C NRK KEQKK ENW K+C KIA E NFP DEI+ M
Sbjct: 298 CVADDNEGCLKKPEGFKCDCNSCCMNRKHKEQKKMENWHTKICDKIAKEPNFPKDEIIDM 357
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
YLC +NG F+A DGP ISW P ++LVDFL +HQ W PSYIR+ M PM+STI+LREMAT
Sbjct: 358 YLCNDNGYFSANDGPQISWERPNMDLLVDFLNFHQNWDPSYIRRIMFPMMSTIFLREMAT 417
Query: 420 NPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI--------SGVKYTA---PVD 468
P +LL GQ+EF S++RVK RYG+Q YVVKWK+A I SG++ VD
Sbjct: 418 TPTDSLLFGQFEFASLKRVKTRYGYQFYVVKWKRAMGNIASKTPANKSGMQEDVIELDVD 477
Query: 469 SDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSL 528
+ L + ++PQI + C FLLTDENM LV +A+P++V F QE E +++KRK+ +
Sbjct: 478 ETVDLLDDCDFPQICEEDGCSFLLTDENMDLVGAAYPEEVKRFRQEQELKDVKRKKNPTS 537
Query: 529 RSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDR-ISKENRRVS 587
S+E+ SP SKGVQL+ITEF+ + K + K G + + + N D SK R+ S
Sbjct: 538 ISQENEKSSTSPNSKGVQLNITEFFPTTKSKHNPKHGEESSSNKNDNQDSGGSKPKRKSS 597
Query: 588 SPNLSKSARRRLLFN 602
SPN+ KS RRRLLF+
Sbjct: 598 SPNIPKSVRRRLLFD 612
>gi|449454486|ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449472478|ref|XP_004153607.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449516535|ref|XP_004165302.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
Length = 606
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/615 (62%), Positives = 464/615 (75%), Gaps = 22/615 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FWDLLKP AR EG DFLR+KRVAVDLS+WIVQHETAIK ++ PHLRLTFFRT
Sbjct: 1 MGVGGHFWDLLKPNARTEGFDFLRNKRVAVDLSFWIVQHETAIK-STARSPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGILVERNQTFLKC 119
I LFAKFGAFPVFVVDGTPSPLKS+AR+ARF R S +D S LP E+ I V RN+ F KC
Sbjct: 60 ITLFAKFGAFPVFVVDGTPSPLKSKARIARFSRLSGVDTSDLPKVEDRISVHRNRKFAKC 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V+ECVELLELFG+PVL+AKGEAEALCA+LN +G+VDACITADSDAFLFGAKCV+K PN
Sbjct: 120 VKECVELLELFGVPVLEAKGEAEALCAELNQKGFVDACITADSDAFLFGAKCVIKSFNPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
+KEP ECY +SDIEA LG R HLIA+SLL+GNDHDLNGVQG+GLDTA+ FVQ++++DEI
Sbjct: 180 SKEPLECYFMSDIEAALGFNRNHLIAISLLVGNDHDLNGVQGVGLDTAVCFVQDYTDDEI 239
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
LN L++IGN D ++ S+ + IK SHCSFCGHPG+KRAH KF CEY
Sbjct: 240 LNKLYEIGNEDTTPLQSGLELVNNYGQSSETNSRKIKCSHCSFCGHPGSKRAHIKFPCEY 299
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C + EGC+KKPDGFKCNCS CN +R+EKE+KK ENW ++V +KIA+E NFP+ E++ M
Sbjct: 300 CDVSHGEGCIKKPDGFKCNCSSCNMDREEKEKKKQENWRLRVRNKIAMEPNFPSSELIQM 359
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
Y C+N+ F+ D +SWGSP TEMLVDFLV+H W+PSYIRQ+MLPMLSTI+LREMA
Sbjct: 360 YQCDNHSYFS-DDDLVLSWGSPRTEMLVDFLVFHLQWEPSYIRQRMLPMLSTIFLREMAN 418
Query: 420 NPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI-------SGVKYTAP-----V 467
NP QTLL GQYEFDSI R KIRYGH YVVKWKKA AI SG T P V
Sbjct: 419 NPTQTLLYGQYEFDSILREKIRYGHSFYVVKWKKAVPAISSTYEDSSGEFGTGPDDAIDV 478
Query: 468 DSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSS 527
D ++L + + P+IH+ C FLLTDENM+LV +A+P++ FLQE +E+KR++T S
Sbjct: 479 DEAVNLTDESDSPKIHIQDGCSFLLTDENMELVAAAYPEQAAKFLQE---KEMKRQKTPS 535
Query: 528 LRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVS 587
+ E++GK +S K+KGVQLSITEFYR+ K Q AD +N + + + + S
Sbjct: 536 TPACETSGKSDSSKAKGVQLSITEFYRATKTQQT----ADTTDLTNEDEETSTGKRKASS 591
Query: 588 SPNLSKSARRRLLFN 602
S LSKS RRRLLF+
Sbjct: 592 SSTLSKSVRRRLLFD 606
>gi|356532054|ref|XP_003534589.1| PREDICTED: flap endonuclease GEN-like 1-like [Glycine max]
Length = 607
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/615 (60%), Positives = 460/615 (74%), Gaps = 21/615 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FWDLLKPYAR EG DFLR+KRVAVDLS+WIVQ E AIK V KPHLRLTFFRT
Sbjct: 1 MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQPENAIKAMHVRKPHLRLTFFRT 60
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGILVERNQTFLKC 119
I+LF KFGA PVF+VDG+PS LKS+AR+AR++R S I+ + LPV EEG+ ERN+ F
Sbjct: 61 ISLFCKFGALPVFIVDGSPSLLKSRARIARYFRCSGIELANLPVPEEGVSAERNRLFSSH 120
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
VQEC EL+EL GMPVLKAKGEAEALCAQLNSEG+VDACITADSDAFLFGAKC++KC PN
Sbjct: 121 VQECAELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCPN 180
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
+KEPFECY +SDIEAGLGLKRKHLIA+SLL+G+DHD+NGV+GIGLDTAL FV+ FSED+I
Sbjct: 181 SKEPFECYNMSDIEAGLGLKRKHLIAISLLVGDDHDINGVRGIGLDTALHFVKAFSEDDI 240
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
LN LH+IG G+ Q IK + D + P K SHCSFCGHPG+K+ H KF CEY
Sbjct: 241 LNRLHEIGKGNTSQIPICIKVEDNV----DGNSPNRKLSHCSFCGHPGSKKDHMKFPCEY 296
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C+ ++EGC +KP+ FKC+C C+ NRK KE+K+ EN KIA E NFP DEI+ M
Sbjct: 297 CVTKDDEGCQRKPEDFKCDCFSCDMNRKHKEKKRLENQHTIFFHKIAEEPNFPKDEIIDM 356
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
YLC +NG F+A+D P I WG+P EML++FL +HQ W+P+Y+R+ M PM+STI+LR+M T
Sbjct: 357 YLCNDNGYFSASDSPHIVWGNPNIEMLINFLNFHQHWEPAYVRRMMFPMISTIFLRDMTT 416
Query: 420 NPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISG----VKYTAPVDSDLHLEE 475
V+T L GQYEFDS+ RVK+RYG+Q +VVKWK+A IS + + D + L+E
Sbjct: 417 TTVETTLFGQYEFDSVERVKMRYGYQFFVVKWKRAGVNISCKVPLKESSVQQDDAIELDE 476
Query: 476 FMEY------PQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLR 529
++ P+IH D C FLLTDENM LV +AFP +V F QE +ELKR + S+ R
Sbjct: 477 MVDLLDDFDAPEIHGDDGCSFLLTDENMDLVGAAFPAEVKRFWQE---QELKRIKNSTSR 533
Query: 530 SEESNGKLESPKSKGVQLSITEFYRSAKVQ-SQEKSGADLAKDSNCQVDRISKENRRVSS 588
S+E N K SP S+ +QL+ITEFY S KV+ Q K G + +K+++ Q + SK R++SS
Sbjct: 534 SQE-NEKSPSPNSRSIQLNITEFYPSTKVKHRQSKQGEESSKNADSQGNGGSKMKRKMSS 592
Query: 589 PN-LSKSARRRLLFN 602
P+ + KS RRRLLF+
Sbjct: 593 PDKIPKSVRRRLLFD 607
>gi|124360865|gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
Length = 547
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/549 (60%), Positives = 411/549 (74%), Gaps = 15/549 (2%)
Query: 67 FGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKCVQECVE 125
FGAFPVFVVDGTPSPLKSQAR+ARF+RS+ I++++LPVAEEG+ RN TF +CVQECVE
Sbjct: 1 FGAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRNSTFSRCVQECVE 60
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
L +L G+PVLKAKGEAEALCAQLNSEG+VDACIT DSDAFLFGAKC++K PN+KEPFE
Sbjct: 61 LAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFSPNSKEPFE 120
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
CY +SDIEAGLGLKRKHLIA+SLL+GNDHDL+GVQGIG+D+AL+FVQ F ED+ILN LH+
Sbjct: 121 CYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFGEDDILNRLHE 180
Query: 246 IGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNN 305
IG G+ Q DIK+ E D + P K +HCSFCGHPG KR H KFSCE+C+ D+N
Sbjct: 181 IGKGNAFQVPIDIKAEENM--DIDGNSPNTKQTHCSFCGHPGNKRDHMKFSCEFCVADDN 238
Query: 306 EGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENN 365
EGCLKKP+GFKC+C+ C NRK KEQKK ENW K+C KIA E NFP DEI+ MYLC +N
Sbjct: 239 EGCLKKPEGFKCDCNSCCMNRKHKEQKKMENWHTKICDKIAKEPNFPKDEIIDMYLCNDN 298
Query: 366 GTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTL 425
G F+A DGP ISW P ++LVDFL +HQ W PSYIR+ M PM+STI+LREMAT P +L
Sbjct: 299 GYFSANDGPQISWERPNMDLLVDFLNFHQNWDPSYIRRIMFPMMSTIFLREMATTPTDSL 358
Query: 426 LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI--------SGVKYTA---PVDSDLHLE 474
L GQ+EF S++RVK RYG+Q YVVKWK+A I SG++ VD + L
Sbjct: 359 LFGQFEFASLKRVKTRYGYQFYVVKWKRAMGNIASKTPANKSGMQEDVIELDVDETVDLL 418
Query: 475 EFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ ++PQI + C FLLTDENM LV +A+P++V F QE E +++KRK+ + S+E+
Sbjct: 419 DDCDFPQICEEDGCSFLLTDENMDLVGAAYPEEVKRFRQEQELKDVKRKKNPTSISQENE 478
Query: 535 GKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDR-ISKENRRVSSPNLSK 593
SP SKGVQL+ITEF+ + K + K G + + + N D SK R+ SSPN+ K
Sbjct: 479 KSSTSPNSKGVQLNITEFFPTTKSKHNPKHGEESSSNKNDNQDSGGSKPKRKSSSPNIPK 538
Query: 594 SARRRLLFN 602
S RRRLLF+
Sbjct: 539 SVRRRLLFD 547
>gi|334182222|ref|NP_171691.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|357529503|sp|Q9LPD2.3|GENL1_ARATH RecName: Full=Flap endonuclease GEN-like 1
gi|332189224|gb|AEE27345.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 599
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/627 (56%), Positives = 434/627 (69%), Gaps = 53/627 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FWDLL+PYA+ +G DFLR+KRVAVDLS+WIVQHETA+K V KPHLRLTFFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVK-GFVLKPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGA+PVFVVDGTPSPLKSQAR++RF+RS+ ID LPV ++G+ VERN+ F +
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEW 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V+ECVELLEL G+PVLKA GEAEALCAQLNS+G+VDACIT DSDAFLFGA CV+K I+PN
Sbjct: 120 VRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
++EPFECY +S IE+GLGLKRKHLIA+SLL+GND+D GV GIG+D AL+ V+ FSED++
Sbjct: 180 SREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQV 239
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
L L IGNG P G IKS ++ E +S HCS CGH G+KR HFK SCE+
Sbjct: 240 LERLQDIGNGLQPAVPGGIKSGDDGEEFRSEMKK--RSPHCSRCGHLGSKRTHFKSSCEH 297
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C D+ GC+KKP GF+C CS C+K+R +EQKK +WWIKVC KIAL FPN +I+ +
Sbjct: 298 CGCDS--GCIKKPLGFRCECSFCSKDRDLREQKKTNDWWIKVCDKIALAPEFPNRKIIEL 355
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
YL ++G T DG S+SWG+P T MLVD +V+ W PSY+R+ +LPMLSTIYLRE A
Sbjct: 356 YL--SDGLMTG-DGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLPMLSTIYLREKAR 412
Query: 420 NPVQ-TLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTA------------- 465
N LLC QYEF SI+ +K RYGHQS+V++W+K S SG ++
Sbjct: 413 NNTGYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKST-SGYSHSHSEPEESIVVLEEE 471
Query: 466 -----PVDSDLHLEEFMEYPQIHVD-GDCWFLLTDENMKLVHSAFPKKVDHFLQENERRE 519
P+D + PQ+ D GDC FLLTDE + LV SAFP + +HFL E + RE
Sbjct: 472 EESVDPLDG-------LNEPQVQNDNGDC-FLLTDECIGLVQSAFPDETEHFLHEKKLRE 523
Query: 520 LKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKV----QSQEKSGADLAKDSNCQ 575
K+K S E + GVQ SIT+FYRSAK QS E G+ A
Sbjct: 524 SKKKNVS-----EEETATPRATTMGVQRSITDFYRSAKKAAAGQSIETGGSSKASAEK-- 576
Query: 576 VDRISKENRRVSSPNLSKSARRRLLFN 602
++ SS NL+KS RRRLLF
Sbjct: 577 ----KRQATSTSSSNLTKSVRRRLLFG 599
>gi|334182224|ref|NP_001184887.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332189225|gb|AEE27346.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 598
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/627 (56%), Positives = 433/627 (69%), Gaps = 54/627 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FWDLL+PYA+ +G DFLR+KRVAVDLS+WIVQHETA+K V KPHLRLTFFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVK-GFVLKPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGA+PVFVVDGTPSPLKSQAR++RF+RS+ ID LPV ++G+ VERN+ F +
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEW 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V+EC ELLEL G+PVLKA GEAEALCAQLNS+G+VDACIT DSDAFLFGA CV+K I+PN
Sbjct: 120 VREC-ELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPN 178
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
++EPFECY +S IE+GLGLKRKHLIA+SLL+GND+D GV GIG+D AL+ V+ FSED++
Sbjct: 179 SREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQV 238
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
L L IGNG P G IKS ++ E +S HCS CGH G+KR HFK SCE+
Sbjct: 239 LERLQDIGNGLQPAVPGGIKSGDDGEEFRSEMKK--RSPHCSRCGHLGSKRTHFKSSCEH 296
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C D+ GC+KKP GF+C CS C+K+R +EQKK +WWIKVC KIAL FPN +I+ +
Sbjct: 297 CGCDS--GCIKKPLGFRCECSFCSKDRDLREQKKTNDWWIKVCDKIALAPEFPNRKIIEL 354
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
YL ++G T DG S+SWG+P T MLVD +V+ W PSY+R+ +LPMLSTIYLRE A
Sbjct: 355 YL--SDGLMTG-DGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLPMLSTIYLREKAR 411
Query: 420 NPVQ-TLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTA------------- 465
N LLC QYEF SI+ +K RYGHQS+V++W+K S SG ++
Sbjct: 412 NNTGYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKST-SGYSHSHSEPEESIVVLEEE 470
Query: 466 -----PVDSDLHLEEFMEYPQIHVD-GDCWFLLTDENMKLVHSAFPKKVDHFLQENERRE 519
P+D + PQ+ D GDC FLLTDE + LV SAFP + +HFL E + RE
Sbjct: 471 EESVDPLDG-------LNEPQVQNDNGDC-FLLTDECIGLVQSAFPDETEHFLHEKKLRE 522
Query: 520 LKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKV----QSQEKSGADLAKDSNCQ 575
K+K S E + GVQ SIT+FYRSAK QS E G+ A
Sbjct: 523 SKKKNVS-----EEETATPRATTMGVQRSITDFYRSAKKAAAGQSIETGGSSKASAEK-- 575
Query: 576 VDRISKENRRVSSPNLSKSARRRLLFN 602
++ SS NL+KS RRRLLF
Sbjct: 576 ----KRQATSTSSSNLTKSVRRRLLFG 598
>gi|414590012|tpg|DAA40583.1| TPA: hypothetical protein ZEAMMB73_816984 [Zea mays]
Length = 636
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/639 (53%), Positives = 432/639 (67%), Gaps = 41/639 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---PHLRLTF 57
MGVGG FWDLLKP AR EG +LR +RVAVDLS+W+V H TAI+ +P+ PHLR TF
Sbjct: 1 MGVGGSFWDLLKPCARHEGAGYLRGRRVAVDLSFWVVSHTTAIRAR-LPRARSPHLRTTF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGI------LV 110
FRT++LFAK GAFPVFVVDG PSPLKSQAR ARF+R S +D + LPV E +
Sbjct: 60 FRTLSLFAKMGAFPVFVVDGEPSPLKSQARAARFFRGSGMDLAALPVTEAESSAAAAPVK 119
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
+RN F + V+ECVELLE GMPVL+A GEAEALCAQLNSEG+VDACITADSDAFL+GAK
Sbjct: 120 KRNAAFTRAVEECVELLEYLGMPVLRANGEAEALCAQLNSEGHVDACITADSDAFLYGAK 179
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
VVK +R N KEPFECY I+DIE+GLGLKRK ++AM+LLIG+DHDL+GV G GL+TAL+F
Sbjct: 180 TVVKVLRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETALRF 239
Query: 231 VQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKR 290
VQ F EDEIL+ LH+IG G P G + + + S P++K HCS CGHPG+K+
Sbjct: 240 VQLFDEDEILDKLHEIGRGVYPFVEGFDNAHIDDLPSSSTKSPVVKLPHCSQCGHPGSKK 299
Query: 291 AHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETN 350
H K C YC+ D+ E C++KP GFKC C C++ R+ KEQ++HENW IKVC +IA ETN
Sbjct: 300 NHSKDGCNYCLVDSLENCMEKPTGFKCECPSCDEARELKEQRRHENWQIKVCKRIAAETN 359
Query: 351 FPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS 410
FPNDEI+ +YL +NN P ++W P E LVD L Y Q W+PSYIRQ MLPMLS
Sbjct: 360 FPNDEIIKLYLSDNN-LVEEKGVPLLTWNKPDVEALVDLLSYKQNWEPSYIRQSMLPMLS 418
Query: 411 TIYLREMATNP-VQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYT-APV- 467
TIYLRE+A++P LLC QYEFDSI+R+KI++GH Y+VKWK+A ++ + + PV
Sbjct: 419 TIYLREVASSPSTPLLLCDQYEFDSIQRIKIKHGHPYYLVKWKRATRGMNSIMSSNKPVM 478
Query: 468 ----------------------DSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFP 505
+S L+E + PQ+ +D C F+LTDE+++LV +AFP
Sbjct: 479 EGETSSEVVLLDEDDDLDAVVCESPELLDE-PDVPQVLIDDGCCFVLTDEDIQLVGAAFP 537
Query: 506 KKVDHFLQENERRELKRKRTSSLR--SEESNGKLESPKSKGVQLSITEFYRSAKVQSQEK 563
K+ F +E +E + + S ++ + E P+ GVQLSITEFYRS K Q+ E
Sbjct: 538 KETARFQEEQRLKEARSRSRKSKSSLADSACKTPEGPRPSGVQLSITEFYRSKKAQNVE- 596
Query: 564 SGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLLFN 602
SG A + + K + R +L KS RRRLLF+
Sbjct: 597 SGKKPAGEGHAARGGSRKSSDRDLDKSLPKSVRRRLLFD 635
>gi|293334819|ref|NP_001169528.1| uncharacterized protein LOC100383402 [Zea mays]
gi|224029901|gb|ACN34026.1| unknown [Zea mays]
gi|414886336|tpg|DAA62350.1| TPA: hypothetical protein ZEAMMB73_316768 [Zea mays]
Length = 638
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 344/641 (53%), Positives = 430/641 (67%), Gaps = 43/641 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI--KKNSVPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+W+V H TAI + +PHLR TFF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSTAILARLPRARRPHLRTTFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGILV------E 111
RT++LFAK G FPVFVVDG PSPLKSQAR ARF+R S +D + P E V
Sbjct: 61 RTLSLFAKMGVFPVFVVDGEPSPLKSQARAARFFRGSGMDLAAFPSTEAESSVTAAPVKR 120
Query: 112 RNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKC 171
RN F +CV+ECVELLE GMPVL+AKGEAEALCAQLN+EG+V ACITADSDAFLFGAK
Sbjct: 121 RNAAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVGACITADSDAFLFGAKT 180
Query: 172 VVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
VVK +R N KEPFECY I+DIE+GLGLKRK L+AM+LLIG+DHDL+GV G GL+TAL+FV
Sbjct: 181 VVKVLRSNCKEPFECYHIADIESGLGLKRKQLVAMALLIGSDHDLHGVPGFGLETALRFV 240
Query: 232 QNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKR 290
Q F EDEIL+ LH+IG G P G D ++ S S +S IKS HCS CGHPG+K+
Sbjct: 241 QLFDEDEILDKLHEIGKGVYPFLKGFDNPHIDDLPSSSKKS--PIKSPHCSHCGHPGSKK 298
Query: 291 AHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETN 350
H K C YC+ D+ E C+++P GFKC C C++ R EQ++HENW IKVC +IA ETN
Sbjct: 299 NHIKDGCNYCLVDSLENCVERPAGFKCECPSCDEARDLNEQRRHENWQIKVCKRIAAETN 358
Query: 351 FPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS 410
FPN+EI+ +YL +NN P +SW P E LVD L Y Q W+PSYIRQ+MLPMLS
Sbjct: 359 FPNEEIIKLYLSDNN-LVEEKGVPLLSWSKPDVEALVDLLSYKQNWEPSYIRQRMLPMLS 417
Query: 411 TIYLREMATNPVQTL-LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI-SGVKYTAPV- 467
TIYLRE+A++ L LC QYEFDSI R KIR+GH Y+VKWK+A + S + PV
Sbjct: 418 TIYLREVASSSSTPLPLCDQYEFDSIERTKIRHGHPYYLVKWKRATRGMNSNMPSKKPVT 477
Query: 468 -----------DSDLHLEEFM----------EYPQIHVDGDCWFLLTDENMKLVHSAFPK 506
D D + + + + PQ+ +D C FLLTDE+++LV +AFPK
Sbjct: 478 EGETSSEVVVLDDDDNEDTVVCESPELLDEPDVPQVLMDDGCCFLLTDEDIQLVGAAFPK 537
Query: 507 KVDHFLQENERRELKRKRTSSLRSEESNGKLESPKS---KGVQLSITEFYRSAKVQSQEK 563
+ F QE +R + R R+ ++ ++ E+PK GVQLSITEFYRS K Q E
Sbjct: 538 ETARF-QEEQRLKEARSRSRKSKTSLADSGCETPKGPRPSGVQLSITEFYRSKKGQDMES 596
Query: 564 SGADLAKDSNCQVDRISKE--NRRVSSPNLSKSARRRLLFN 602
A + + S++ +R +++ +L KS RRRLLF+
Sbjct: 597 GKKKQAGEGHAAARDGSRKSSDRDLNNKSLPKSVRRRLLFD 637
>gi|297842934|ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
gi|297335190|gb|EFH65607.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 351/627 (55%), Positives = 431/627 (68%), Gaps = 62/627 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FWDLL+PYA+ G D+LR+KRVAVDLS+WIVQHETA+K V KPHLRLTFFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQRGFDYLRNKRVAVDLSFWIVQHETAVK-GFVLKPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGA+PVFVVDGTPSPLKSQAR++RF+RS+ ID LPV ++G+ VERN+ F +
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFCEW 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V+ECVELLEL +PVLKA GEAEALCAQLNSEGYVDACIT DSDAFLFGAKCV+K I+PN
Sbjct: 120 VKECVELLELLSIPVLKANGEAEALCAQLNSEGYVDACITPDSDAFLFGAKCVIKDIKPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
++EPFECY +SDIE+GLGLKRKHLIA+SLL+GND+D GV GIG+D AL+ V+ FSEDEI
Sbjct: 180 SREPFECYHMSDIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDEI 239
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
L L IG G P G IKS ++ E +S HCS CGH G+KR HFK SCE+
Sbjct: 240 LERLQDIGKGLKPTVPGGIKSVDDGEEFRSEMKK--RSPHCSRCGHLGSKRTHFKSSCEH 297
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C D+ GC+KKP GF+ K +++ +WWIKVC KIAL FPN +I+ +
Sbjct: 298 CGCDS--GCIKKPLGFRF-----------KGTEENHDWWIKVCDKIALAPEFPNRKIIEL 344
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
YL + TA DG S+SWG+P T MLVD +V+ W PSY+R+ +LPMLSTIYLRE A
Sbjct: 345 YLSDG---LTAEDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLPMLSTIYLREKAR 401
Query: 420 NPV-QTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTA--PVDS------- 469
N LLC QYEF SI+ +K RYG+QS+V++W+K S ISG ++ P +S
Sbjct: 402 NSTGNALLCDQYEFHSIKCIKTRYGNQSFVIRWRKPIS-ISGYSHSQSEPEESIVVLEEE 460
Query: 470 ------DLHLEEFMEYPQIHVD-GDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKR 522
+ + + PQ+ D GDC FLLTDE + LV SAFP + +HFL E + RE K+
Sbjct: 461 LVEEEESVDPLDGLNEPQVQNDNGDC-FLLTDECIGLVESAFPDETEHFLHEKKLRESKK 519
Query: 523 KRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKV---QSQEKSGADLAKDSNCQVDRI 579
K SEE+ P + GVQ SIT+FYRSAK QS E G+ R
Sbjct: 520 KNV----SEET--ATPRPTTMGVQRSITDFYRSAKAAPGQSIETGGS----------SRA 563
Query: 580 SKENRRVSS----PNLSKSARRRLLFN 602
S E +R ++ NLSKS RRRLLF
Sbjct: 564 SAEKKRQATSTSSSNLSKSVRRRLLFG 590
>gi|357159491|ref|XP_003578463.1| PREDICTED: flap endonuclease GEN-like 1-like [Brachypodium
distachyon]
Length = 639
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 341/652 (52%), Positives = 426/652 (65%), Gaps = 63/652 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS--VPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+WIV H TAI+ S PHLR TFF
Sbjct: 1 MGVGGSFWDLLKPYARQEGAGYLRGRRVAVDLSFWIVSHTTAIRARSPHARHPHLRTTFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTL-----------PVAEE 106
RT++LF+K GAFPVFVVDG PSPLK QAR ARF+R S ID S L P +
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKYQARAARFFRGSGIDRSALQSEDAEGEASVPAPVK 120
Query: 107 GILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFL 166
G RN F + V+ECVELL GMPVL+A GEAEALCAQLN+EG+VDACIT+DSDAFL
Sbjct: 121 G----RNAAFTRYVEECVELLGYLGMPVLRATGEAEALCAQLNNEGHVDACITSDSDAFL 176
Query: 167 FGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDT 226
FGAK V+K +R N KEPFECY I+DIE+G+GLKRK ++AM+LL+G+DHDL+GV G G++T
Sbjct: 177 FGAKTVIKVLRSNCKEPFECYNIADIESGIGLKRKQMVAMALLVGSDHDLHGVPGFGVET 236
Query: 227 ALQFVQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGH 285
AL+FVQ F ED IL+ L +IG G P G D + S S+ S P+++S HCS CGH
Sbjct: 237 ALRFVQLFEEDHILDKLKEIGRGIYPFLEGFDKAHVNDLPSPSETSPPVVRSPHCSHCGH 296
Query: 286 PGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKI 345
PG+K+ H K C YC+ D E C++KP GF C C C+K R K Q++HENW IKVC ++
Sbjct: 297 PGSKKNHSKTGCNYCLVDTLENCVEKPAGFVCECPSCDKARSLKAQRRHENWQIKVCKRL 356
Query: 346 ALETNFPNDEIVTMYLCENNGTFTATDG-PSISWGSPMTEMLVDFLVYHQPWQPSYIRQK 404
A ETNFPN+EI+ +YLC+NN +G P + W P E LVDFL Y Q W+PSYIRQ
Sbjct: 357 AAETNFPNEEIIKLYLCDNN--LDEENGIPLLRWDEPNVEALVDFLAYMQKWEPSYIRQH 414
Query: 405 MLPMLSTIYLREMATNPVQTLLC-GQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKY 463
MLPMLSTIYLRE+A++P + LL QYEF SI R+KIRYGH Y+VKWK+A+S++
Sbjct: 415 MLPMLSTIYLREVASSPCKLLLLYDQYEFLSIERIKIRYGHPYYLVKWKRASSSMVSSGV 474
Query: 464 --TAP-VDSDLH----------------------LEEFMEYPQIHVDGDCWFLLTDENMK 498
T P +D D H L + + PQ+ D + FLLTDE+++
Sbjct: 475 SDTKPELDGDGHAEVVVLDDDDDEEATVICESADLLDEPDIPQVLRDDNRIFLLTDEDIQ 534
Query: 499 LVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKS---KGVQLSITEFYRS 555
LV++AFP + F +E RE ++ R+ + +N E+PK GVQLSI EFYRS
Sbjct: 535 LVNAAFPNEARRFQEEQSLRE-EKTRSRKSKMNLANSMFETPKGPRPSGVQLSIKEFYRS 593
Query: 556 AKVQSQEKSGADLAKDSNCQVDRISKENRRVSSP-----NLSKSARRRLLFN 602
K E SG L + + SK R SSP + KS RRRLLF+
Sbjct: 594 KKAAGDE-SGKKLHVEG-----QTSKAASRKSSPVDLDKKIPKSIRRRLLFD 639
>gi|63098616|gb|AAY32559.1| single strand DNA repair-like protein [Triticum monococcum]
Length = 646
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 329/651 (50%), Positives = 421/651 (64%), Gaps = 54/651 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS--VPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+WIV H TAI+ S +PH+R TFF
Sbjct: 1 MGVGGSFWDLLKPYARQEGPVYLRGRRVAVDLSFWIVSHSTAIRARSPHARRPHVRNTFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAE-EG------ILV 110
RT++LFAK GAFPVFVVDG PSPLKSQAR ARF+R S +D AE EG +
Sbjct: 61 RTLSLFAKMGAFPVFVVDGEPSPLKSQARAARFFRGSGVDPPASSSAEAEGEASAPAPVK 120
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
RN F +CV++CVELL+ GMPVL AKGEAEALCAQLN+EG VDACIT+DSDAFLFGAK
Sbjct: 121 ARNAIFTRCVKDCVELLKNLGMPVLWAKGEAEALCAQLNNEGEVDACITSDSDAFLFGAK 180
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V+K +R N KEPFECY I DIE+G+GLKRK ++AM+LLIG+DHDL+GV G G++TAL+F
Sbjct: 181 TVIKVMRSNCKEPFECYNIVDIESGIGLKRKQMVAMALLIGSDHDLHGVPGFGVETALRF 240
Query: 231 VQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTK 289
V+ F ED+IL+ LH+IG G P G D + S S +S P+ +S HCS CGHPG+K
Sbjct: 241 VRLFDEDQILDKLHEIGKGIYPFLEGFDKAHVGDLPSPSTKSPPVARSPHCSHCGHPGSK 300
Query: 290 RAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET 349
+ H K C YC+ D+ E C++KP GF C C C K R K Q++HENW IKVC ++A ET
Sbjct: 301 KNHSKTGCNYCLVDSLEFCMEKPAGFICECPSCEKARDLKAQRRHENWQIKVCKRLAAET 360
Query: 350 NFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPML 409
NFPN+EI+ +YLC++N + + W P + LVD L Y Q W+PSY+RQ MLPML
Sbjct: 361 NFPNEEIIRLYLCDDNLDNKESGDRKLEWTEPKVDDLVDLLTYMQNWEPSYVRQHMLPML 420
Query: 410 STIYLREMATNPVQT-LLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI--SGVKYTAP 466
STIYLR MA++P ++ LLC QYEF SI+R+KI++G+ Y+VKWK+A I G + P
Sbjct: 421 STIYLRRMASSPCKSLLLCDQYEFHSIQRIKIKHGYPYYLVKWKRATGGIVSGGASHNKP 480
Query: 467 -VDSDLHLEEFM--------------------------EYPQIHVDGDCWFLLTDENMKL 499
+D H E + + PQ+ D D +LLTDE+++L
Sbjct: 481 ELDGGSHAEVVVLDNDDEEEEEEEAAANIESADSLDEPDLPQVLRDDDQVYLLTDEDIQL 540
Query: 500 VHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKS---KGVQLSITEFYRSA 556
V +AFP F QE +R + + R+ + ++ LE+PK GVQLSI EFYRS
Sbjct: 541 VSAAFPNDARRF-QEAQRLKDAKSRSRKSKLSLADSMLETPKGPRPSGVQLSIKEFYRSK 599
Query: 557 KVQSQEKSGADLAKDSNCQVDRISKENRRVSSP-----NLSKSARRRLLFN 602
K E + + + S+ R S P + KS RRRLLF+
Sbjct: 600 KAAGDEAGKKPVVEGESSS----SRAGSRKSPPVDLTKRMPKSLRRRLLFD 646
>gi|110430659|gb|ABG73449.1| DNA repair protein [Oryza brachyantha]
Length = 629
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 327/648 (50%), Positives = 427/648 (65%), Gaps = 65/648 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS--VPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LRD+RVAVDLS+W+V H TAI+ S PHLR FF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRDRRVAVDLSFWVVSHSTAIRARSPHARVPHLRTLFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAE-----EGILVER 112
RT++LF+K GA+PVFVVDG PSPLKSQAR ARF+R S +D +TLP E + + R
Sbjct: 61 RTLSLFSKMGAYPVFVVDGEPSPLKSQARAARFFRGSGMDLATLPSTEGEANADSPVQPR 120
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
N F + V+ECVELLE GMPVL+AKGE EALCAQLN+EG+VDACIT+DSDAFLFGAK V
Sbjct: 121 NAKFTRYVKECVELLEYLGMPVLRAKGEGEALCAQLNNEGHVDACITSDSDAFLFGAKTV 180
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+K +R N KEPFECY ++DIE+GLGLKRK ++AM+LL+G+DHDL+GV G G +TAL+FVQ
Sbjct: 181 IKVLRSNCKEPFECYNMTDIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
Query: 233 NFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRA 291
F ED +L+ L++IG G P G + ++ S S +S+P + HCS CGHPG K+
Sbjct: 241 LFDEDTVLDKLYEIGKGVYPFIEGVTAPNIDDLPSPSTKSLPRV--PHCSHCGHPGNKKN 298
Query: 292 HFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNF 351
H K C +C+ D+ E C++KP GF C C C+K R KE++++ENW IKVC +IA ETNF
Sbjct: 299 HIKSGCNFCLVDSLENCVEKPTGFICECPSCDKARDLKERRRNENWQIKVCKRIAAETNF 358
Query: 352 PNDEIVTMYLCENNGTFTATDGP-SISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS 410
PN+EI+ +YL NN +G S+ W P E+LVDFL + Q W+P+YIRQ+MLPMLS
Sbjct: 359 PNEEIIKLYLSGNN--LDDENGVLSLKWNKPDVEVLVDFLSFKQNWEPAYIRQRMLPMLS 416
Query: 411 TIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASA------------- 457
TIYLREMA++P ++ L QYEF SI+R+KIRYGH Y+VKWK+ +
Sbjct: 417 TIYLREMASSPSKSFLYDQYEFHSIQRIKIRYGHPYYLVKWKRFTRSRISNDSPSKQTEL 476
Query: 458 ---------ISGVKYTAPVDSD---------LHLEEFMEYPQIHVDGDCWFLLTDENMKL 499
+ G D D L + + PQ+ D +FLLTDE+++L
Sbjct: 477 EGKNDKMVVLDGDDEVVFSDEDEEVTMSSPSTELLDEPDVPQVLDDYKNYFLLTDEDIQL 536
Query: 500 VHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPK----SKGVQLSITEFYRS 555
V++AFP + F QE +R +K ++ + +S+ S E+PK S GVQL+I EFYRS
Sbjct: 537 VNAAFPDEAQRF-QEEQR--MKEAKSRAQKSKLSLAGFETPKGPRPSAGVQLNIKEFYRS 593
Query: 556 AKVQSQEKSGADLAKDSNCQVDRISKENRRVS-SPNLSKSARRRLLFN 602
K G+D KD S+++ V S NL K+ RR LLF+
Sbjct: 594 KK-----GPGSDSGKDG-------SRKSSDVDLSKNLPKNVRRCLLFD 629
>gi|75288736|sp|Q64MA3.1|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
Short=Protein OsGEN-like; AltName: Full=OsRAD
gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
Group]
gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
Length = 629
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 324/649 (49%), Positives = 425/649 (65%), Gaps = 67/649 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS--VPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+W+V H AI+ S PHLR FF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAE-----EGILVER 112
RT++LF+K GAFPVFVVDG PSPLKSQ R ARF+R S +D + LP E + ++ R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALVQPR 120
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
N F + V++CVELLE GMPVL+AKGE EALCAQLN++G+VDACIT+DSDAFLFGAK V
Sbjct: 121 NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTV 180
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+K +R N KEPFECY ++DIE+GLGLKRK ++AM+LL+G+DHDL+GV G G +TAL+FVQ
Sbjct: 181 IKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
Query: 233 NFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAH 292
F ED +L L++IG G P + ++ S S +S+P +S HCS CGHPG K+ H
Sbjct: 241 LFDEDNVLAKLYEIGKGVYPFIGVSAPNIDDLPSPSTKSLPRARSPHCSHCGHPGNKKNH 300
Query: 293 FKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFP 352
K C +C+ D+ E C++KP GF C C C+K R K Q+++ENW IKVC +IA ETNFP
Sbjct: 301 IKDGCNFCLVDSLENCVEKPAGFICECPSCDKARDLKVQRRNENWQIKVCKRIAAETNFP 360
Query: 353 NDEIVTMYLCENNGTFTATDG-PSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST 411
N+EI+ +YL ++N +G P ++W P E+LVDFL + Q W+P+YIRQ+MLPMLST
Sbjct: 361 NEEIINLYLNDDN--LDNENGVPLLTWNKPDMEILVDFLSFKQNWEPAYIRQRMLPMLST 418
Query: 412 IYLREMATNPVQT-LLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSD 470
IYLREMA++ ++ LL QY+F SI+R+KIRYGH Y+VKWK+ ++ P
Sbjct: 419 IYLREMASSQSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWKRVTRSMIS---NDPPSKQ 475
Query: 471 LHLE------------------------------EFMEYPQI----HVDGDCWFLLTDEN 496
LE E ++ P + D DC FLLTDE+
Sbjct: 476 TELEGKNDKVEVLDGDDEVVDEEEEEPTMISETTELLDEPDVPQVLDDDKDC-FLLTDED 534
Query: 497 MKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKS---KGVQLSITEFY 553
++LV++AFP + F QE +R LK ++ + +S+ + E+PK GVQLSI EFY
Sbjct: 535 IELVNAAFPDEAQRF-QEEQR--LKEAKSIARKSKLNVAGFETPKGPRPSGVQLSIKEFY 591
Query: 554 RSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLLFN 602
RS K S + SG D ++ S+ VD S NL KS RRRLLF+
Sbjct: 592 RSKKGLSGD-SGKDGSRKSS-DVDL---------SKNLPKSVRRRLLFD 629
>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
Length = 630
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 323/646 (50%), Positives = 425/646 (65%), Gaps = 60/646 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS--VPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+W++ H AI+ S PHLR FF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVISHSAAIRARSPHARLPHLRTLFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAE-----EGILVER 112
RT++LF+K GAFPVFVVDG PSPLKSQ R ARF+R S +D + LP E + + R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADAPVQPR 120
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
N F + V++CVELLE GMPVL+AKGE EALCAQLN++G+VDACIT+DSDAFLFGAK V
Sbjct: 121 NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTV 180
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+K +R N KEPFECY ++DIE+GLGLKRK ++AM+LL+G+DHDL+GV G G +TAL+FVQ
Sbjct: 181 IKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
Query: 233 NFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRA 291
F ED +L L++IG G P G + ++ S S +S+P +S HCS CGHPG K+
Sbjct: 241 LFDEDNVLAKLYEIGKGVYPFIEGVSAPNIDDLPSPSTKSLPRARSPHCSHCGHPGNKKN 300
Query: 292 HFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNF 351
H K C +C+ D+ E C++KP GF C C C+K R K Q+++ENW IKVC +IA ETNF
Sbjct: 301 HIKDGCNFCLVDSLENCVEKPAGFICECPSCDKARDMKVQRRNENWQIKVCKRIAAETNF 360
Query: 352 PNDEIVTMYLCENNGTFTATDG-PSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS 410
PN+EI+ +YL ++N +G P ++W P E+LVDFL + Q W+P+YIRQ+MLPMLS
Sbjct: 361 PNEEIINLYLSDDN--LDNENGVPLLTWNKPDMEILVDFLSFKQNWEPAYIRQRMLPMLS 418
Query: 411 TIYLREMATNPVQT-LLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI----SGVKYT- 464
TIYLREMA++ ++ LL QY+F SI+R+KIRYGH Y+VKWK+ ++ S K T
Sbjct: 419 TIYLREMASSQSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWKRVTRSMISNDSPSKQTE 478
Query: 465 -------------------------APVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKL 499
+ L + + PQ+ D FLLTDE+++L
Sbjct: 479 LEGKNDKVEVLDGDDEVVDEEEEEPTMISETTELLDEPDVPQVLDDDKDCFLLTDEDIEL 538
Query: 500 VHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKS---KGVQLSITEFYRSA 556
V++AFP + F QE +R LK ++ + +S+ + E+PK GVQLSI EFYRS
Sbjct: 539 VNAAFPDEAQRF-QEEQR--LKEAKSIARKSKLNVAGFETPKGPRPSGVQLSIKEFYRSK 595
Query: 557 KVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLLFN 602
K S + SG D ++ S+ VD S NL KS RRRLLF+
Sbjct: 596 KGLSGD-SGKDGSRKSS-DVDL---------SKNLPKSVRRRLLFD 630
>gi|242045348|ref|XP_002460545.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
gi|241923922|gb|EER97066.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
Length = 590
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 320/639 (50%), Positives = 404/639 (63%), Gaps = 87/639 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---PHLRLTF 57
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+W+V H TAI+ +P+ PHLR TF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSTAIRAR-LPRARSPHLRTTF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAE------EGILV 110
FRT++LFAK GAFPVFVVDG PSPLKSQAR ARF+R S +D + LP E +
Sbjct: 60 FRTLSLFAKMGAFPVFVVDGEPSPLKSQARAARFFRGSGMDLAALPSTETESSAAAAPVK 119
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
RN F +CV+ECVELLE GMPVL+AKGEAEALCAQLN+EG+VDACITADSDAFLFGAK
Sbjct: 120 RRNAAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVDACITADSDAFLFGAK 179
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
VVK R N KEPFECY I+DIE+GLGLKRK ++AM+LLIG+DHDL+GV G GL+TAL+F
Sbjct: 180 TVVKVFRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETALRF 239
Query: 231 VQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKR 290
VQ F EDEIL+ LH+IG G P G + + + S P+ KS HCS CGHPG+K+
Sbjct: 240 VQLFDEDEILDKLHEIGRGVYPFLEGFDNAHIDDLPSSSTKSPVAKSPHCSHCGHPGSKK 299
Query: 291 AHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETN 350
H K C YC+ D+ E C++KP GFKC C C++ R KEQ++HENW IKVC +IA ETN
Sbjct: 300 NHSKDGCNYCLVDSLENCVEKPAGFKCECPSCDEARDLKEQRRHENWQIKVCKRIAAETN 359
Query: 351 FPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS 410
FPN+EI+ +YL +NN
Sbjct: 360 FPNEEIIKLYLSDNN--------------------------------------------- 374
Query: 411 TIYLREMATNP-VQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI-SGVKYTAPV- 467
+ E+A++P LLC QYEFDSI+R+KIR+GH Y+VKWK+A + + + PV
Sbjct: 375 --LVEEVASSPSTPLLLCDQYEFDSIQRIKIRHGHPYYLVKWKRATRGMNTDMSSKKPVT 432
Query: 468 ----DSDL-----------------HLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPK 506
SD+ L + + PQ+ +D C FLLTDE+++LV +AFPK
Sbjct: 433 EGETSSDVAVLDEDDDEDTVVCESPELLDEPDVPQVLIDDGCTFLLTDEDIQLVGAAFPK 492
Query: 507 KVDHFLQENERRELKRKRTSSLRSEESNGKLESPKS---KGVQLSITEFYRSAKVQSQEK 563
+ F QE +R + R R+ +S ++ E+PK GVQLSITEFYRS K Q+ E
Sbjct: 493 ETARF-QEEQRLKEARSRSRKSKSSLADTACETPKGPRPSGVQLSITEFYRSKKGQNAE- 550
Query: 564 SGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLLFN 602
SG A + + K + R + +L KS RRRLLF+
Sbjct: 551 SGKKPAGEGQASKEGSRKSSDRDLNKDLPKSVRRRLLFD 589
>gi|8570440|gb|AAF76467.1|AC020622_1 Contains similarity to excision repair protein ERCC5 from Homo
sapiens gi|1082359 and contains XPG N-terminal PF|00752
and XPG I-region PF|00867 domains [Arabidopsis thaliana]
Length = 497
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/392 (64%), Positives = 309/392 (78%), Gaps = 9/392 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FWDLL+PYA+ +G DFLR+KRVAVDLS+WIVQHETA+K V KPHLRLTFFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVK-GFVLKPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGA+PVFVVDGTPSPLKSQAR++RF+RS+ ID LPV ++G+ VERN+ F +
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEW 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V+ECVELLEL G+PVLKA GEAEALCAQLNS+G+VDACIT DSDAFLFGA CV+K I+PN
Sbjct: 120 VRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
++EPFECY +S IE+GLGLKRKHLIA+SLL+GND+D GV GIG+D AL+ V+ FSED++
Sbjct: 180 SREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQV 239
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
L L IGNG P G IKS ++ E +S HCS CGH G+KR HFK SCE+
Sbjct: 240 LERLQDIGNGLQPAVPGGIKSGDDGEEFRSEMKK--RSPHCSRCGHLGSKRTHFKSSCEH 297
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C D+ GC+KKP GF+C CS C+K+R +EQKK +WWIKVC KIAL FPN +I+ +
Sbjct: 298 CGCDS--GCIKKPLGFRCECSFCSKDRDLREQKKTNDWWIKVCDKIALAPEFPNRKIIEL 355
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLV 391
YL ++G T DG S+SWG+P T MLVD +V
Sbjct: 356 YL--SDGLMTG-DGSSMSWGTPDTGMLVDLMV 384
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 66/122 (54%), Gaps = 16/122 (13%)
Query: 485 DGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKSKG 544
+GDC FLLTDE + LV SAFP + +HFL E + RE K+K S E + G
Sbjct: 388 NGDC-FLLTDECIGLVQSAFPDETEHFLHEKKLRESKKKNVS-----EEETATPRATTMG 441
Query: 545 VQLSITEFYRSAKV----QSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLL 600
VQ SIT+FYRSAK QS E G+ A ++ SS NL+KS RRRLL
Sbjct: 442 VQRSITDFYRSAKKAAAGQSIETGGSSKASAEK------KRQATSTSSSNLTKSVRRRLL 495
Query: 601 FN 602
F
Sbjct: 496 FG 497
>gi|302764352|ref|XP_002965597.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
gi|300166411|gb|EFJ33017.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
Length = 552
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 224/529 (42%), Positives = 301/529 (56%), Gaps = 50/529 (9%)
Query: 1 MGVGGKFWDLLKPYARF-EGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFR 59
MGVGG FW+L+KP E L L+DKR+A+DLS+WIVQ E A+ K+ KPHLRL FFR
Sbjct: 1 MGVGGGFWELIKPLRHSSEDLSTLQDKRLAIDLSHWIVQQE-AVLKDRARKPHLRLLFFR 59
Query: 60 TINL-FA-KFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE-EGILVERNQTF 116
+ L F+ + GA PVFVVDG LK AR+ RF R S +P A+ G RN+ F
Sbjct: 60 VVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSR----FSGIPAAQLNGGDNHRNRAF 115
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L+ V+ECVELL L +PVL+A EAEALCA+L G VDAC+T DSDAFL GA+CV++ +
Sbjct: 116 LENVEECVELLGLLNVPVLRATSEAEALCAELERNGVVDACVTPDSDAFLHGARCVIQTL 175
Query: 177 RPNTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ + K+P E Y SDI L L+R+HLIA++LL+G D++L G+ G+G A++ VQ+FS
Sbjct: 176 QADIKKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGIPGVGYSNAMRLVQHFS 235
Query: 236 EDEILNILHKIGNGDIP--QYWG---------DIKSTEEAVSHSDESMPMIKSSHCSFCG 284
+DEIL+ L K G + P + G D K ++A H + K SHCS CG
Sbjct: 236 KDEILDNLRKWGRREYPSPEVIGKLSDSANGFDSKEGDDAALH----LGRRKDSHCSMCG 291
Query: 285 HPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSK 344
HPG K+ H K CE C + N GC +K FKC C C ++R+ K+ +K WW + +K
Sbjct: 292 HPGNKKLHTKLGCEDCGSLNTAGCSQKAKNFKCGCGSCAQDRRRKKHEKDVTWWSNLRAK 351
Query: 345 IALETNFPNDEIVTMYLCENNGTFTATDGPSIS--WGSPMTEMLVDFLVYHQPWQPSYIR 402
I+ +FPN+EI+ ++L T +G S+ W +P E L FL H W SYIR
Sbjct: 352 ISAIEDFPNEEIIEIFL-NTGATSYLREGQSLDLRWEAPQMEPLELFLGSHLHWDVSYIR 410
Query: 403 QKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK 462
+K LP+LS L+ +A P LL G+Y SI ++K G YVVKW A + G
Sbjct: 411 KKALPLLSHYCLKSIAEGPSMALLNGRYTPTSILKLKTNVGKPLYVVKW-NAVDSFGGPG 469
Query: 463 YTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHF 511
DS + TDE + L+ A P V F
Sbjct: 470 GETNEDS---------------------ITTDEQISLIKRACPALVSKF 497
>gi|302769318|ref|XP_002968078.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
gi|300163722|gb|EFJ30332.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
Length = 552
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 219/525 (41%), Positives = 298/525 (56%), Gaps = 42/525 (8%)
Query: 1 MGVGGKFWDLLKPYARF-EGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFR 59
MGVGG FW+L+KP + L L+DKR+A+DLS+WIVQ E A+ K+ KPHLRL FFR
Sbjct: 1 MGVGGGFWELVKPLRHSSDDLSTLQDKRLAIDLSHWIVQQE-AVLKDRARKPHLRLLFFR 59
Query: 60 TINL-FA-KFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE-EGILVERNQTF 116
+ L F+ + GA PVFVVDG LK AR+ RF R S +P A+ G RN+ F
Sbjct: 60 VVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSR----LSGIPAAQLNGGDNHRNRAF 115
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L+ V+ECVELL L +PVL+A EAEALCA+L G VDAC+T DSDAFL GA CV++ +
Sbjct: 116 LENVEECVELLGLLNVPVLRATSEAEALCAELERNGVVDACVTPDSDAFLHGASCVIQTL 175
Query: 177 RPNTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ + K+P E Y SDI L L+R+HLIA++LL+G D++L G+ G+G A++ VQ+FS
Sbjct: 176 QADIKKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGIPGVGYSNAMRLVQHFS 235
Query: 236 EDEILNILHKIGNGDIP--QYWGDIKSTEEAVS--HSDESMPMI---KSSHCSFCGHPGT 288
+DEIL+ L K G + P + G + + D++ + K SHCS CGHPG
Sbjct: 236 KDEILDNLRKWGRREYPSPEVIGKLSDSANGFDSKEGDDAALQLGRRKDSHCSMCGHPGN 295
Query: 289 KRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALE 348
K+ H K CE C + N GC +K FKC C C ++R+ K+ +K WW + +KI+
Sbjct: 296 KKLHTKLGCEDCGSLNTAGCSQKTKNFKCGCGSCAQDRRRKKHEKDVTWWSNLRAKISAI 355
Query: 349 TNFPNDEIVTMYLCENNGTFTATDGPSIS--WGSPMTEMLVDFLVYHQPWQPSYIRQKML 406
+FPN+EI+ ++L T +G S+ W +P E L FL H W SYIR+K L
Sbjct: 356 EDFPNEEIIEIFL-NTGATSYLREGQSLDLRWEAPKMEPLELFLGSHLHWDVSYIRKKTL 414
Query: 407 PMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP 466
P+LS L+ +A LL G+Y SI ++K G YVVKW A + G
Sbjct: 415 PLLSHYSLKAIAEGSSMALLNGRYIPTSILKLKTNVGKPLYVVKW-NAVDSFGGPGGETN 473
Query: 467 VDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHF 511
DS + TDE + L+ A P V F
Sbjct: 474 EDS---------------------ITTDEQISLIKRACPALVSKF 497
>gi|168064381|ref|XP_001784141.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664341|gb|EDQ51065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 435
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 188/445 (42%), Positives = 266/445 (59%), Gaps = 23/445 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV G FWD L+ ++ + LD+L KR+AVDLSYW+VQ +TA+ V KPHLR+ FR
Sbjct: 1 MGVRGGFWDELRVVSKRKSLDWLHGKRLAVDLSYWVVQQQTAVG-GLVRKPHLRILLFRV 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN----QTF 116
+NL ++ G PVFVVDGT P K R+ R + ++ LP +E + E N F
Sbjct: 60 VNLISRAGVLPVFVVDGTFPPEKLAVRMERLTLMST-SNILPNPQEFVTGESNIACNNGF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+ + ECVELLEL GMPVL A EAE LCA+L+ +G VDAC+TADSDAFL GA+CV+K +
Sbjct: 119 QRRIDECVELLELLGMPVLHAAWEAEGLCAELDRDGLVDACVTADSDAFLHGARCVIKVL 178
Query: 177 RPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ ++K P E Y DI+ LGL R+H+IA++LL+G D++ GV GIG + A++ V++ S
Sbjct: 179 QMDSKVPIIETYDAEDIKTILGLDREHMIALALLMGCDYNKKGVVGIGCNRAIRLVRSVS 238
Query: 236 EDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGTKRAHFK 294
+++ + NGD + KS+ + SM KS HC CGH GT+R H
Sbjct: 239 SNKVFD---SEANGDQND---EGKSSCRKPDSVNTSMSTKKSLRHCGNCGHLGTRREHIV 292
Query: 295 FSCEYC--INDNNE----GCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALE 348
C +C + D E GCL+K GF+C C C K +K K+ + +NWW+K C K+A
Sbjct: 293 AGCTFCKGVADRTEATEWGCLQKEKGFQCACEACVKKKKSKKSTRQKNWWVKCCDKMAKS 352
Query: 349 TNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPM 408
FPN++I+ ++L G + I W P E+L DFL + W S++RQ+MLP+
Sbjct: 353 DGFPNEDIINIFL--RPGCREGSPSSLIKWRIPKMELLEDFLHINLHWDTSFVRQRMLPL 410
Query: 409 LSTIYLREMAT-NPVQTLLCGQYEF 432
LSTI L+ +A N + + Y F
Sbjct: 411 LSTICLKGLAARNQSEAKMWNDYPF 435
>gi|147845003|emb|CAN80577.1| hypothetical protein VITISV_031734 [Vitis vinifera]
Length = 239
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/185 (78%), Positives = 161/185 (87%), Gaps = 2/185 (1%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FW+LLKPYAR EG D++R+KRVAVDLS+WIVQ ETA K N V PHLRLTFFRT
Sbjct: 1 MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQETATKAN-VRNPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGAFPVFVVDGTPSPLKSQAR+ARF+R S ID S LPV EEG+ VERN F +
Sbjct: 60 INLFSKFGAFPVFVVDGTPSPLKSQARIARFFRGSGIDLSGLPVVEEGVSVERNAEFSRR 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
VQECVELLEL G+PVLKA+ EAEALCAQLNSEG+VDACITADSDAFLFGAKCV+KC+RPN
Sbjct: 120 VQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCLRPN 179
Query: 180 TKEPF 184
K F
Sbjct: 180 CKVSF 184
>gi|224130172|ref|XP_002320770.1| predicted protein [Populus trichocarpa]
gi|222861543|gb|EEE99085.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/125 (82%), Positives = 111/125 (88%), Gaps = 2/125 (1%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGGKFWDLLKPYAR EG DFLR+KRVAVDLSYWIVQHETAIK V KPHLRLTFFRT
Sbjct: 1 MGVGGKFWDLLKPYARHEGPDFLREKRVAVDLSYWIVQHETAIKATHVRKPHLRLTFFRT 60
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGA PVFVVDGTPSPLKS+AR+ARF+R S +D S LPVA EG+ ERN+TFLKC
Sbjct: 61 INLFSKFGALPVFVVDGTPSPLKSKARIARFFRFSGVDVSGLPVA-EGVSAERNKTFLKC 119
Query: 120 VQECV 124
VQECV
Sbjct: 120 VQECV 124
>gi|307184932|gb|EFN71197.1| Flap endonuclease GEN [Camponotus floridanus]
Length = 738
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 160/546 (29%), Positives = 255/546 (46%), Gaps = 64/546 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + L L+ K +A+DLS W+V +T + PK +LR +FRT
Sbjct: 1 MGVKD-LWNILSPLCERKPLYELQGKTIAIDLSGWVVDSQTIVDNAVQPKMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
L + G PVFV++G LK + +AR R+ + + E R Q F + +
Sbjct: 60 AFLLMQ-GISPVFVLEGKAPTLKHKT-IAR--RNDVRSGFQERKEAAKKGGRTQ-FNRVL 114
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK------CVVK 174
EC E+L+ G+ +++ GEAEA+CA LN G VD C++ DSD FL+GAK C K
Sbjct: 115 NECKEMLKFMGIACVQSYGEAEAMCAYLNENGLVDGCVSQDSDCFLYGAKIVYRNFCTSK 174
Query: 175 CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
T + Y + IE L + R +I ++LL G D+ GV G+G + AL+F +
Sbjct: 175 GNNGATAGSIDVYNMEKIEKTLNIGRNKMIVLALLCGCDYS-EGVNGVGKEAALKFFKTV 233
Query: 235 SEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFK 294
++ N+L +I N W S + S ++ + C+ CGH G + H K
Sbjct: 234 DDE---NVLQRIQN------WKTDTSLDRIESD------LLNPNLCTSCGHQGKLQKHNK 278
Query: 295 FSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPND 354
C+ C G ++K CN N +EK I + KI + NFPN
Sbjct: 279 SGCDDC------GTVEK----------CNDNFREKRALMLNE--ISLRRKILHDKNFPNQ 320
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E++ +L + + + D I W P +DF+ H W+P Y +K+ + + L
Sbjct: 321 ELIEEFLNKKDLISSKLD---IGWKQPQVYQFIDFMEKHLCWEPQYAFEKIFTLTTRWQL 377
Query: 415 REMAT-NPVQTL-LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLH 472
++ P + L + + D I++++ SY + WKK S I +K
Sbjct: 378 LHLSDFTPAERLSMSNLFIPDQIKKIRNIRSIASYEIIWKKEHSVIEMLK---------E 428
Query: 473 LEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
+E +E ++G L T E LV +P+ V+ F EN R +KRT++ R ++
Sbjct: 429 YKEQIELNDNDIEG--ILLTTIEPQDLVLKCYPELVEIF--ENTRNVKTKKRTTNSRRKK 484
Query: 533 SNGKLE 538
+E
Sbjct: 485 VTTNIE 490
>gi|344280345|ref|XP_003411944.1| PREDICTED: flap endonuclease GEN homolog 1 [Loxodonta africana]
Length = 739
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 150/532 (28%), Positives = 241/532 (45%), Gaps = 63/532 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKEHTHVHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R + + G F
Sbjct: 60 -ISFLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGKTWSQKTG-----RSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNANGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGVAILLGCDYLPKGVPGVGKEQALKLIQTLRGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGTKRAHFKFSC 297
+L ++ W E +SD + ++K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------WN------EKSCYSDTQIQVVKKLAHCSVCSHPGSPKDHERNGC 278
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIV 357
+ C +D C + C C R + N K CS FP E++
Sbjct: 279 KLCKSDRY--CEPHDYEYCCPCEWHRMERDRQLNAVENNIKKKACSC----EGFPFHEVI 332
Query: 358 TMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREM 417
+L N I + P + F W Y +K+L +L+ +M
Sbjct: 333 QEFLLNKNKLLKV-----IRYQRPDLLLFQRFTFEKMEWPNHYACEKLLVLLTHY---DM 384
Query: 418 ATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFM 477
+ C Q + I + +IR G + ++W+K D + E
Sbjct: 385 MERKLGRRSCNQLQPIRIVKTRIRNGVHCFEIEWEKP---------------DHYATEDK 429
Query: 478 EYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLR 529
E+ ++ L T E L +A+P+ V + + ++ E+K K+ S++
Sbjct: 430 EHEEL-------ILQTIEEESLFEAAYPEIVAIY--QKQKLEIKGKKQKSMK 472
>gi|355565476|gb|EHH21905.1| hypothetical protein EGK_05073 [Macaca mulatta]
Length = 907
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 151/539 (28%), Positives = 261/539 (48%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
CI+D + C +P ++ C C+ +R E +++ E N K CS FP E
Sbjct: 280 LCISD--KYC--EPHDYE-YCCPCDWHRTEHDRQLSEVENNMKKKACSC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAIY--QKQKLEIKGKKQKRIKPKENN 477
>gi|198434339|ref|XP_002124511.1| PREDICTED: similar to Flap endonuclease GEN homolog 1 [Ciona
intestinalis]
Length = 579
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 215/460 (46%), Gaps = 55/460 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHET-AIKKNSVPKPHLRLTFFR 59
MGV G WD+L+ + L L+D+ AVDL+ WI + E+ A K+++ KP+LR FFR
Sbjct: 1 MGVQG-LWDILQEVKTTKKLCDLKDRTYAVDLATWICEAESVAALKHAIAKPYLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLK 118
I F + G +FV DG LK + R R + T G N F
Sbjct: 60 VIT-FTRNGTRLIFVTDGKAPELKWKTMAHRMDVRQEVQKGT--NVSHGSRSRLNARF-- 114
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
EC +LL+ G+P +K++GEAEA CA LNS G VD C+T DSD FL+GAK V + +
Sbjct: 115 --NECCQLLDQLGIPWIKSEGEAEATCAALNSVGVVDGCMTNDSDTFLYGAKSVYRNLSM 172
Query: 179 NTKE---PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
T ECY + DIE+ L L RK LIA+ LL+G D+ GV G+G A+ + +
Sbjct: 173 TTDRNDIDVECYELCDIESKLQLNRKSLIALGLLLGCDYSPQGVPGVGKKQAIMLLSS-- 230
Query: 236 EDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESM--PMI--KSSHCSFCGHPGTKRA 291
W +I E+ + ES+ P + K +HCS C H G+KR
Sbjct: 231 -------------------WKNIDPLEKLKAWKSESVLSPTVTKKPTHCSACSHIGSKRD 271
Query: 292 HFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNF 351
H K C+ C ++ +CS C + E EQ+KH N + K L NF
Sbjct: 272 HKKNGCDICGSECGS-----ETALPVDCS-CEWHVLENEQRKH-NLENGIKKKALLVENF 324
Query: 352 PNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST 411
P+ +I+ + G+ +S P V +L WQ Y K+LP+L+
Sbjct: 325 PDPKIIREFTRNKLGSQPLN---HLSPRQPTLFGAVQYLCEKLEWQVKYAVDKVLPLLTY 381
Query: 412 IYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKW 451
++ T + F I R +I+ S+ VKW
Sbjct: 382 WLMQNEGT-------INEISFQRIVRTRIKDRVPSFEVKW 414
>gi|148666016|gb|EDK98432.1| RIKEN cDNA 5830483C08 [Mus musculus]
Length = 908
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 159/545 (29%), Positives = 247/545 (45%), Gaps = 74/545 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTQMNVKLVFVMEGEPPMLKADVISKR-----TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY IS I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q F
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E+ +S P K HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----IEDPCYSVPQSAPK-KVVHCSVCSHPGSPKDHERNGCI 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C +D + C + C C + + N K CS FP E++
Sbjct: 279 LCKSD--KYCEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSC----EGFPFHEVIQ 332
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L N I++ P + F V W Y +K+L +L+
Sbjct: 333 EFLLNKNKMLKP-----ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLT-------- 379
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLH-LEEF 476
+D I R ++G +K ++ + ++ P V + +H LE
Sbjct: 380 ------------RYDMIER---KHG--------RKTSNQLQPIRIVKPRVRNGVHCLEIE 416
Query: 477 MEYPQIHV--DGDC--WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
E P+ +V DGD LLT E L +A+P V + + + E K ++ S++++
Sbjct: 417 WEKPEHYVVEDGDPGELSLLTMEEASLFEAAYPDAVAVY--QKQLSETKGRKQKSMKNKP 474
Query: 533 SNGKL 537
L
Sbjct: 475 KGSHL 479
>gi|148540148|ref|NP_796305.3| flap endonuclease GEN homolog 1 [Mus musculus]
gi|166221585|sp|Q8BMI4.2|GEN_MOUSE RecName: Full=Flap endonuclease GEN homolog 1
gi|60334795|gb|AAH90653.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957028|gb|AAI38159.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957572|gb|AAI38158.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
Length = 908
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 159/545 (29%), Positives = 247/545 (45%), Gaps = 74/545 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTQMNVKLVFVMEGEPPMLKADVISKR-----TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY IS I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q F
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E+ +S P K HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----IEDPCYSVPQSAPK-KVVHCSVCSHPGSPKDHERNGCI 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C +D + C + C C + + N K CS FP E++
Sbjct: 279 LCKSD--KYCEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSC----EGFPFHEVIQ 332
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L N I++ P + F V W Y +K+L +L+
Sbjct: 333 EFLLNKNKMLKP-----ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLT-------- 379
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLH-LEEF 476
+D I R ++G +K ++ + ++ P V + +H LE
Sbjct: 380 ------------RYDMIER---KHG--------RKTSNQLQPIRIVKPRVRNGVHCLEIE 416
Query: 477 MEYPQIHV--DGDC--WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
E P+ +V DGD LLT E L +A+P V + + + E K ++ S++++
Sbjct: 417 WEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVY--QKQLSETKGRKQKSMKNKP 474
Query: 533 SNGKL 537
L
Sbjct: 475 KGSHL 479
>gi|26326927|dbj|BAC27207.1| unnamed protein product [Mus musculus]
Length = 908
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 159/545 (29%), Positives = 247/545 (45%), Gaps = 74/545 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTQMNVKLVFVMEGEPPMLKADVISKR-----TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY IS I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q F
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E+ +S P K HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----IEDPCYSVPQSAPK-KVVHCSVCSHPGSPKDHERNGCI 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C +D + C + C C + + N K CS FP E++
Sbjct: 279 LCKSD--KYCEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSC----EGFPFHEVIQ 332
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L N I++ P + F V W Y +K+L +L+
Sbjct: 333 EFLLNKNKMLKP-----ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLT-------- 379
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLH-LEEF 476
+D I R ++G +K ++ + ++ P V + +H LE
Sbjct: 380 ------------RYDMIER---KHG--------RKTSNQLQPIRIVKPRVRNGVHCLEIE 416
Query: 477 MEYPQIHV--DGDC--WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
E P+ +V DGD LLT E L +A+P V + + + E K ++ S++++
Sbjct: 417 WEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVY--QKQLSETKGRKQKSMKNKP 474
Query: 533 SNGKL 537
L
Sbjct: 475 KGSHL 479
>gi|26326997|dbj|BAC27242.1| unnamed protein product [Mus musculus]
Length = 908
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 158/545 (28%), Positives = 247/545 (45%), Gaps = 74/545 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K ++ KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTIKKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTQMNVKLVFVMEGEPPMLKADVISKR-----TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY IS I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q F
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E+ +S P K HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----IEDPCYSVPQSAPK-KVVHCSVCSHPGSPKDHERNGCI 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C +D + C + C C + + N K CS FP E++
Sbjct: 279 LCKSD--KYCEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSC----EGFPFHEVIQ 332
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L N I++ P + F V W Y +K+L +L+
Sbjct: 333 EFLLNKNKMLKP-----ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLT-------- 379
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLH-LEEF 476
+D I R ++G +K ++ + ++ P V + +H LE
Sbjct: 380 ------------RYDMIER---KHG--------RKTSNQLQPIRIVKPRVRNGVHCLEIE 416
Query: 477 MEYPQIHV--DGDC--WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
E P+ +V DGD LLT E L +A+P V + + + E K ++ S++++
Sbjct: 417 WEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVY--QKQLSETKGRKQKSMKNKP 474
Query: 533 SNGKL 537
L
Sbjct: 475 KGSHL 479
>gi|402890148|ref|XP_003908353.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Papio anubis]
gi|402890150|ref|XP_003908354.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Papio anubis]
gi|402890152|ref|XP_003908355.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Papio anubis]
Length = 906
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 150/539 (27%), Positives = 261/539 (48%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C+ +R E +++ +E N K CS FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCDWHRTEHDRQLNEVENNMKKKACSC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAIY--QKQKLEIKGKKQKRIKPKENN 477
>gi|383418083|gb|AFH32255.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
gi|383418085|gb|AFH32256.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
Length = 907
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 150/539 (27%), Positives = 260/539 (48%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLSNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C+ +R E +++ E N K CS FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCDWHRTEHDRQLSEVENNMKKKACSC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAIY--QKQKLEIKGKKQKRIKPKENN 477
>gi|355751124|gb|EHH55379.1| hypothetical protein EGM_04579 [Macaca fascicularis]
Length = 907
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 150/539 (27%), Positives = 260/539 (48%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C+ +R E +++ E N K CS FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCDWHRTEHDRQLSEVENNMKKKACSC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAIY--QKQKLEIKGKKQKRIKPKENN 477
>gi|109102065|ref|XP_001092423.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Macaca
mulatta]
gi|109102069|ref|XP_001092651.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 4 [Macaca
mulatta]
Length = 907
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 150/539 (27%), Positives = 260/539 (48%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVVKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C+ +R E +++ E N K CS FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCDWHRTEHDRQLSEVENNMKKKACSC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAIY--QKQKLEIKGKKQKRIKPKENN 477
>gi|395828598|ref|XP_003787457.1| PREDICTED: flap endonuclease GEN homolog 1 [Otolemur garnettii]
Length = 884
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 149/533 (27%), Positives = 242/533 (45%), Gaps = 68/533 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLHNLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK A + + P + F
Sbjct: 60 -ISYLMQMNVKLVFVMEGEPPKLK-----ADVMKKRNEIRYGPSGKTWSQKTGRSHFKSL 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE G+P ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V K N
Sbjct: 114 LKECLEMLECLGIPWVQAAGEAEAMCAHLNAGGHVDGCLTNDGDAFLYGAQTVYKNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S +++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSVKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMI--KSSHCSFCGHPGTKRAHFKFS 296
+L Q + K T S++ P++ K +HCS C HPG+ + H +
Sbjct: 234 LL------------QRFNQWKET----SYNSNPQPLVAKKPAHCSVCSHPGSPKDHERNG 277
Query: 297 CEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEI 356
C C +D C ++C C + + N K CS FP E+
Sbjct: 278 CRLCNSD--RYCEPHDYEYRCPCEWHLTEHERQLSGVENNIKKKACSY----EGFPFHEV 331
Query: 357 VTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
+ +L + I + P + F + W Y +K+L +L+ +
Sbjct: 332 IQEFLLNKDKLAKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY---D 383
Query: 417 MATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEF 476
M + Q + I + +IR G + ++W+K
Sbjct: 384 MTERKLGRRSSDQLQPTRIVKTRIRNGVHCFEIEWEKP---------------------- 421
Query: 477 MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLR 529
E+ I G+ +LT E L +A+P+ V + + ++ E+K K+ S++
Sbjct: 422 -EHYAIEEPGES--ILTIEEESLFEAAYPEIV--AIYQKQKLEIKGKKQKSMK 469
>gi|332029054|gb|EGI69068.1| Flap endonuclease GEN [Acromyrmex echinatior]
Length = 736
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 159/553 (28%), Positives = 255/553 (46%), Gaps = 68/553 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + L L+ K +A+DLS WIV +T + P+ +LR +F
Sbjct: 1 MGVKD-LWNVLSPLCEKKPLYELQGKTIAIDLSGWIVDSQTIVDNMVQPRMYLRNLYFLV 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
G FPVFV++G P LK + +AR A++G R Q F + +
Sbjct: 60 ------HGIFPVFVLEGKPPILKHKT-IARRNDVRSRFQERKTAKKG---GRTQ-FNRVL 108
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRP 178
EC ELL G+ +++ GEAEA+CA LN +G VD CI+ DSD FL+GAK V + C+
Sbjct: 109 NECKELLRYMGVACVQSYGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFCMST 168
Query: 179 N-----TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ T + Y + IE L + R +IA++LL G D+D GV G+G + L+F +
Sbjct: 169 HGNCGATGGSVDVYSMEKIEKTLNIGRNKMIALALLCGCDYD-EGVNGVGKEATLKFFKT 227
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
E+ N+L +I Q W T+ ++ ++ ++ S C+ CGHPG + H
Sbjct: 228 VKEE---NVLQRI------QDW----RTDTRLNKAE--CDLLNPSLCTSCGHPGKLQKHT 272
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K C C G ++K CN + +EK I + K NFPN
Sbjct: 273 KSGCADC------GTVRK----------CNDDFREKRALILNE--ISLRKKALYYENFPN 314
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
E++ +L + T D I W P +DF+ + W+P Y +K+ +++
Sbjct: 315 QELIDEFLIRKDSIPTKLD---IKWKQPQVNEFIDFMNKYVCWEPQYTFEKIFTLITRWQ 371
Query: 414 LREMATNPVQTLLCGQYEF--DSIRRVKIRYGHQSYVVKWKKAASAISGVK-YTAPVDSD 470
L + + L F DSI++++ SY + WKK I +K Y ++ +
Sbjct: 372 LLHLPNLTLDERLSMTDLFIPDSIKKIRNIRSIASYEIIWKKEHDVIKMLKEYKEQINEN 431
Query: 471 LHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRS 530
+ + L + E LV +PK V+ + EN R +KRT + R
Sbjct: 432 GDENDDDDVDNN-------LLTSIEPQDLVLKCYPKLVEVY--ENTRNIKTKKRTVNSRK 482
Query: 531 EESNGKLESPKSK 543
+++ +E ++
Sbjct: 483 KKATTNVEDNDTR 495
>gi|296224442|ref|XP_002758061.1| PREDICTED: flap endonuclease GEN homolog 1 [Callithrix jacchus]
Length = 909
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 154/556 (27%), Positives = 255/556 (45%), Gaps = 101/556 (18%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L + +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLHNLGGQILAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQT---- 115
I+ + VFV++G P LK+ ++ +RNQT
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKAD----------------------VISKRNQTRYGF 96
Query: 116 -------------FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
F ++EC+++LE G+P ++A GEAEA+CA LN+ G VD C+T D
Sbjct: 97 SGKSWSQKTGRSHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGRVDGCLTNDG 156
Query: 163 DAFLFGAKCVVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
D FL+GA+ V + NTK+P +CY +S I++ LGL R L+ +++L+G D+ GV G
Sbjct: 157 DTFLYGAQTVYRNFTMNTKDPHVDCYKMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPG 216
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCS 281
+G + AL+ +Q +L ++ W E + + S E + K +HCS
Sbjct: 217 VGKEQALKLIQILKGQSLLQRFNR---------WN-----ETSCNSSPEPLVTKKLAHCS 262
Query: 282 FCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWW 338
C HPG+ + H + C C +N+ C +P ++ C C +R E +++ E N
Sbjct: 263 ICSHPGSPKDHERNGCRLC--KSNKYC--EPHDYE-YCCPCEWHRTEHDRQLSEVENNIK 317
Query: 339 IKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQP 398
K C FP E++ +L + I + P + F + W
Sbjct: 318 KKACGC----EGFPFHEVIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPN 368
Query: 399 SYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAI 458
Y +K+L +L+ +M + Q + I + +IR G + ++W+K +
Sbjct: 369 HYACEKLLVLLTRY---DMIERKLGRRHSNQLQPIRIVKTRIRNGVHCFEIEWEKPEHYV 425
Query: 459 SGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERR 518
++ H E + LLT E L +A+P+ V + + ++
Sbjct: 426 --------MEDKQHGE--------------FALLTTEEEALFEAAYPEIVAIY--QKQKL 461
Query: 519 ELKRKRTSSLRSEESN 534
E+KRK+ S++ +E+N
Sbjct: 462 EIKRKKQKSIKPKENN 477
>gi|426334793|ref|XP_004028921.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426334795|ref|XP_004028922.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 908
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 259/539 (48%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHMPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN++G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNADGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSICSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ +E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLNEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|157821963|ref|NP_001100187.1| flap endonuclease GEN homolog 1 [Rattus norvegicus]
gi|149050926|gb|EDM03099.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 908
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 152/536 (28%), Positives = 238/536 (44%), Gaps = 60/536 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTQMNVKLVFVMEGEPPKLKADVMNKR-----TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W TEE +S K HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----TEEP-GYSVPQSAAKKVVHCSVCSHPGSPKDHERNGCT 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C +D C + C C + + + N K CS FP E++
Sbjct: 279 LCKSD--RYCEPHDYEYLCPCEWHQTDHNRQLNEIENNIKKKACSC----EGFPFHEVIQ 332
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L N I + P + F V W Y +K+L +L+ +M
Sbjct: 333 EFLSNKNKLLKP-----IRYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRY---DMI 384
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFME 478
+ Q + I + +IR G ++W+K V+ T P D
Sbjct: 385 ERKLGRKTSNQLQPIRIVKPRIRNGVCCLEIEWEKPEHY--SVEDTQPGGLD-------- 434
Query: 479 YPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
LLT E L +A+P+ V + ++ + K+++ ++ + S+
Sbjct: 435 ------------LLTIEEASLFEAAYPEVVAIYQKQQSETKGKKQKNIKIKPKGSH 478
>gi|194018531|ref|NP_872431.3| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|194018535|ref|NP_001123481.1| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|290457644|sp|Q17RS7.2|GEN_HUMAN RecName: Full=Flap endonuclease GEN homolog 1
Length = 908
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 150/539 (27%), Positives = 257/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ +S +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQSRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLSEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|114576279|ref|XP_001136636.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan
troglodytes]
gi|410034836|ref|XP_003949810.1| PREDICTED: flap endonuclease GEN homolog 1 [Pan troglodytes]
gi|410218742|gb|JAA06590.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410255580|gb|JAA15757.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410287868|gb|JAA22534.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410352247|gb|JAA42727.1| Gen homolog 1, endonuclease [Pan troglodytes]
Length = 908
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 257/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRSLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGARTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLSEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|440909937|gb|ELR59789.1| Flap endonuclease GEN-like protein 1, partial [Bos grunniens mutus]
Length = 906
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/486 (28%), Positives = 223/486 (45%), Gaps = 39/486 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTLMDVKLVFVMEGEPPHLKADVISKRN-----QVRYGPSGKTWSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W +E++ + + + + K +HCS C HPG+ + H + C+
Sbjct: 234 LLQRFNQ---------W-----SEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERNGCK 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C D C ++C C + + N K CS FP E+
Sbjct: 280 LCQTDRY--CEPHDYEYRCPCEWHRTEHERQLNAVENNIKKKACSC----EGFPFHEVTQ 333
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L + A + + P + F + W Y +K+L +L+ + E
Sbjct: 334 EFLLNKDKLVKA-----VRYQRPDLLLFQRFTLEKMEWPNHYACEKLLTLLTHYDMTERK 388
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFME 478
+ Q + I + +IR G + ++W+K K+ V + E E
Sbjct: 389 LGRRNS---NQLQPIRIVKNRIRNGVHCFEIEWEKPEHYAIEDKHGELVVQTIEEESLFE 445
Query: 479 --YPQI 482
YP+I
Sbjct: 446 AAYPEI 451
>gi|109658672|gb|AAI17207.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
Length = 908
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 258/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ +E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLNEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|109658826|gb|AAI17205.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
gi|313883890|gb|ADR83431.1| Gen homolog 1, endonuclease (Drosophila) (GEN1), transcript variant
2 [synthetic construct]
Length = 908
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 258/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ +E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLNEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|47077235|dbj|BAD18538.1| unnamed protein product [Homo sapiens]
Length = 908
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 258/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ +E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLNEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|311253092|ref|XP_003125389.1| PREDICTED: flap endonuclease GEN homolog 1 [Sus scrofa]
Length = 906
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 144/492 (29%), Positives = 228/492 (46%), Gaps = 51/492 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L+ L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R + + G F
Sbjct: 60 -ISCLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGKTWSHKTG-----RSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G VD C+T D DAFL+GA+ V + N
Sbjct: 114 LKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I+ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 TKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIKTLKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W EE+ S + + + + K +HCS C HPG+ R H + C+
Sbjct: 234 LLQRFNQ---------W-----IEESYSSNSQPLVVNKLAHCSVCSHPGSPRDHERHGCK 279
Query: 299 YCINDNNEGCLKKPDGFKCNC----SLCNK--NRKEKEQKKHENWWIKVCSKIALETNFP 352
C D C + C C + C + N E KK K CS FP
Sbjct: 280 LCKTD--RFCEPHDYEYSCPCEWHQTECGRQLNAVENSIKK------KACSC----EGFP 327
Query: 353 NDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTI 412
E++ +L + I + P + F + W Y +K+L +L+
Sbjct: 328 FHEVIQEFLLSKDKLVK-----EIRYRRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY 382
Query: 413 YLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLH 472
+ E + Q + I + +IR G + + ++W+K + +Y V +
Sbjct: 383 DMTERKLGRRNS---NQLQPIRIVKTRIRNGVRCFEIEWEKPEHYTTEDEYGELVLQTIE 439
Query: 473 LEEFME--YPQI 482
E E YP+I
Sbjct: 440 EESLFEAAYPEI 451
>gi|354481807|ref|XP_003503092.1| PREDICTED: flap endonuclease GEN homolog 1 [Cricetulus griseus]
Length = 876
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 218/456 (47%), Gaps = 40/456 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIGTVVKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ S P +++ F
Sbjct: 60 -ISYLIQMNVKLVFVMEGEPPKLKADV-ISKRTQTRYGPSGKPCSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE G+P ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQMVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY S I++ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 TKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLRILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGTKRAHFKFSC 297
+L ++ W EE S + P K+ +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----IEEPCSSIPQ--PAAKNVAHCSVCSHPGSPKDHERNGC 277
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIV 357
+C +D C + C C + + N K CS FP E++
Sbjct: 278 TFCKSDRY--CEPHDYEYLCPCEWHQTKHNRQLNEIENNIKKKACSC----KGFPFHEVI 331
Query: 358 TMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREM 417
+L + I + P + F V W Y +K+L +L+ + E
Sbjct: 332 QEFLLNKDKMLKP-----IRYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMTER 386
Query: 418 ATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKK 453
+ GQ + I R +IR + ++W+K
Sbjct: 387 KLGRKNS---GQLQPIRIVRPRIRNRVRCLEIEWEK 419
>gi|329664332|ref|NP_001192379.1| flap endonuclease GEN homolog 1 [Bos taurus]
gi|296482355|tpg|DAA24470.1| TPA: flap structure-specific endonuclease-like [Bos taurus]
Length = 906
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 222/486 (45%), Gaps = 39/486 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTLMDVKLVFVMEGEPPHLKADVISKRN-----QVRYGPSGKTWSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W +E++ + + + + K +HCS C HPG+ + H + C+
Sbjct: 234 LLQRFNQ---------W-----SEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERNGCK 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C D C ++C C + + N K CS FP E+
Sbjct: 280 LCQTDRY--CEPHDYEYRCPCEWHRTEHERQLNAVENNIKKKACSC----EGFPFHEVAQ 333
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L + A + + P + F + W Y +K+L +L+ + E
Sbjct: 334 EFLLNKDKLVKA-----VRYQRPDLLLFQRFTLEKMEWPNHYACEKLLTLLTHYDMTERK 388
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFME 478
+ Q + I + +IR G + ++W+K K+ + E E
Sbjct: 389 LGRRNS---NQLQPIRIVKNRIRNGVHCFEIEWEKPEHYTIEDKHGELAVQTIEEESLFE 445
Query: 479 --YPQI 482
YP+I
Sbjct: 446 AAYPEI 451
>gi|403288138|ref|XP_003935270.1| PREDICTED: flap endonuclease GEN homolog 1 [Saimiri boliviensis
boliviensis]
Length = 909
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 257/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L + +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGQTLAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGCVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLSEVENNIKKKACGC----EGFPFQE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+ +
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMT 385
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
E + Q + I + +IR G + ++W+K E
Sbjct: 386 ERKLGRRHS---NQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ S++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEEALFEAAYPEIVAIY--QKQKLEIKGKKQKSIKPKENN 477
>gi|332253767|ref|XP_003276003.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Nomascus
leucogenys]
gi|332253769|ref|XP_003276004.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Nomascus
leucogenys]
Length = 907
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 251/536 (46%), Gaps = 61/536 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + ++ K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQSVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFTSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+V+ C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVNGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C +D + C + C C + + N K CS FP E++
Sbjct: 280 LCKSD--KYCEPHDYEYCCPCEWHCTEHDRQLNEVENNIKKKACSC----EGFPFHEVIQ 333
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L + I++ P + F + W Y +K+L +L+ +M
Sbjct: 334 EFLLNKDKLVKV-----ITYRRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY---DMI 385
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFME 478
+ + Q + I + +IR G + ++W+K E +
Sbjct: 386 ERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EHYAM 426
Query: 479 YPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 427 EDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|426223166|ref|XP_004005748.1| PREDICTED: flap endonuclease GEN homolog 1 [Ovis aries]
Length = 931
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/489 (28%), Positives = 226/489 (46%), Gaps = 45/489 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 21 MGVND-LWQILEPVKQHIHLHSLSGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 79
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R P + F
Sbjct: 80 -ISYLTLMDVKLVFVMEGEPPHLKADVISKRN-----QVRYGPSGKTWSQKTGRSHFKSV 133
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D D FL+GA+ V + N
Sbjct: 134 LKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDTFLYGAQTVYRNFTMN 193
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I+ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 194 TKDPHVDCYTMSSIKTKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQS 253
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E++ + + + + K +HCS C HPG+ + H + C+
Sbjct: 254 LLQRFNQ---------WN-----EKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERIGCK 299
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKK---HENWWIKVCSKIALETNFPNDE 355
C D C +P ++ C C +R E E++ N K CS FP E
Sbjct: 300 LCQTD--RYC--EPHDYE-YCCPCEWHRAEHERQLSTIENNIKKKACSC----EGFPFHE 350
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
+ +L + A I + P + F + W Y +K+L +L+ +
Sbjct: 351 VTQEFLLNKDKLMKA-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLTLLTHYDMT 405
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
E + Q + I + +IR G + ++W+K + K+ + E
Sbjct: 406 ERKLGRRNS---NQLQPIRIVKNRIRNGVHCFEIEWEKPEHYATEDKHGELALQTVEEES 462
Query: 476 FME--YPQI 482
E YP+I
Sbjct: 463 LFEAAYPEI 471
>gi|397513474|ref|XP_003827038.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Pan paniscus]
gi|397513476|ref|XP_003827039.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Pan paniscus]
gi|397513478|ref|XP_003827040.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan paniscus]
Length = 908
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 148/539 (27%), Positives = 257/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGARTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C +PG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSYPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLSEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>gi|432096863|gb|ELK27441.1| Flap endonuclease GEN like protein 1 [Myotis davidii]
Length = 903
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 220/459 (47%), Gaps = 44/459 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVSD-LWQILEPVKQHIHLSSLGGKTIAVDLSLWVCESQTVKKMIGTVTKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R + + G F
Sbjct: 60 -ISHLTLMDVKLVFVMEGEPPKLKADVINKRNQIRYGPSGKTWSQKTG-----RSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ELLE G+P ++A GEAEA+C+ L++ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLELLECLGIPWVQAAGEAEAMCSYLDASGYVDGCLTNDGDAFLYGARTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGTKRAHFKFSC 297
+L I+ +EE +S++ +IK +HCS C HPG+ + H C
Sbjct: 234 LLQRF--------------IQWSEEKPCNSNQQPLVIKKLAHCSVCSHPGSPKDHEHNGC 279
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKK---HENWWIKVCSKIALETNFPND 354
+ C D +P ++ CS C +R E++++ N K CS FP
Sbjct: 280 KLCQTDR----YCEPHDYEYCCS-CEWHRTEQDRQLMTIENNIKKKACSC----EGFPFH 330
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E++ +L + A + + P + F + W Y +K+L +L+
Sbjct: 331 EVIQEFLLNKDKLVKA-----VRYQRPDLLLFQRFTLEKMDWPNHYACEKLLVLLTHY-- 383
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKK 453
+M + Q + I + +IR G + ++W+K
Sbjct: 384 -DMIERKLGRRHSNQLQPIRIVKNRIRNGVHCFEIEWEK 421
>gi|281344218|gb|EFB19802.1| hypothetical protein PANDA_002978 [Ailuropoda melanoleuca]
Length = 906
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 142/490 (28%), Positives = 227/490 (46%), Gaps = 48/490 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHLHLHNLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R + + G F
Sbjct: 60 -ISYLTLMDVKLVFVMEGEPPKLKADVICRRNQMRYGPSGKTWSQKTG-----RSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIRTLKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L + W EE+ S + + + K +HCS C HPG+ + H + C+
Sbjct: 234 LLQRFTQ---------WN-----EESCS-DPQPLAIKKLAHCSVCSHPGSPKDHVRNGCK 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET----NFPND 354
C N C +P ++ C C +R E H+ V + I + FP
Sbjct: 279 LC--KTNRYC--EPHDYE-YCCPCEWHRTE-----HDRQLSTVENSIKKKAYSCEGFPFH 328
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E++ +L + I + P + F + W Y +K+L +L+ +
Sbjct: 329 EVIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDM 383
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLE 474
E + Q + I + +IR G + ++W+K K+ V + E
Sbjct: 384 TERKLGRRNS---NQLQPIRIVKTRIRNGIHCFEIEWEKPEHYAMEDKHGELVLQTIEEE 440
Query: 475 EFME--YPQI 482
E YP+I
Sbjct: 441 SLFEAAYPEI 450
>gi|301758368|ref|XP_002915044.1| PREDICTED: flap endonuclease GEN homolog 1-like [Ailuropoda
melanoleuca]
Length = 907
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 142/490 (28%), Positives = 227/490 (46%), Gaps = 48/490 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHLHLHNLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R + + G F
Sbjct: 60 -ISYLTLMDVKLVFVMEGEPPKLKADVICRRNQMRYGPSGKTWSQKTG-----RSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIRTLKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L + W EE+ S + + + K +HCS C HPG+ + H + C+
Sbjct: 234 LLQRFTQ---------WN-----EESCS-DPQPLAIKKLAHCSVCSHPGSPKDHVRNGCK 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET----NFPND 354
C N C +P ++ C C +R E H+ V + I + FP
Sbjct: 279 LC--KTNRYC--EPHDYE-YCCPCEWHRTE-----HDRQLSTVENSIKKKAYSCEGFPFH 328
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E++ +L + I + P + F + W Y +K+L +L+ +
Sbjct: 329 EVIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDM 383
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLE 474
E + Q + I + +IR G + ++W+K K+ V + E
Sbjct: 384 TERKLGRRNS---NQLQPIRIVKTRIRNGIHCFEIEWEKPEHYAMEDKHGELVLQTIEEE 440
Query: 475 EFME--YPQI 482
E YP+I
Sbjct: 441 SLFEAAYPEI 450
>gi|307212664|gb|EFN88367.1| Flap endonuclease GEN [Harpegnathos saltator]
Length = 741
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 156/544 (28%), Positives = 248/544 (45%), Gaps = 70/544 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + L L+ K +A+DLS W+V +T + K +LR +FRT
Sbjct: 1 MGVKD-LWNILSPLCDRKPLYELQGKTIAIDLSGWVVDSQTIVDNAVQSKMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
L G PVFV++G +K + + R + +++G R+Q F + +
Sbjct: 60 AFLLM-HGISPVFVLEGKAPDIKHKT-IIRRHNVRHGFCERKTSKKG---GRSQ-FNRIL 113
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK----CI 176
EC ++LE G+ +++ GEAEA+CA LN +G VD CI+ DSD FL+GA+ V + I
Sbjct: 114 TECKQMLEYMGITCIQSHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGARIVYRNFCTSI 173
Query: 177 RPNTKE---PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ N + YC+ IE L + R +IA++LL G D+D GV G+G + AL+F +
Sbjct: 174 QGNCGARGGSVDIYCMDKIEKILNIGRNKMIALALLCGCDYD-EGVTGVGKEAALKFFKI 232
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
++ N+L +I Q W ++ S ++ S C+ CGH G + H
Sbjct: 233 VEDN---NVLQRI------QEWRTDTKLDKVES------DLLNSDLCTSCGHKGKLQKHI 277
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K C C G ++K CN + K K I + K + FP
Sbjct: 278 KSGCTDC------GTIRK----------CNDDYKHKRVLMLNE--ISLRKKALCDETFPK 319
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
E++ +L + T D I W P +DF+ + W P Y +K+ +
Sbjct: 320 QELIEEFLVRKDAVPTKLD---IEWKQPQVSHFIDFMEKYLCWDPQYAFEKIFTLTIRWQ 376
Query: 414 LREMATNPVQTLLCGQYEF--DSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDL 471
L ++ + L F + IR+++ SY + WKK S I
Sbjct: 377 LLHLSNLTLDKRLSIPNLFVPNEIRKIRNIRSIASYEIIWKKEHSEIE------------ 424
Query: 472 HLEEFMEYPQIHVDG--DCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLR 529
L + E Q + DG D FL + E LV +P+ V+ F EN R +KRT++ R
Sbjct: 425 RLNNYKEQTQRN-DGNDDDNFLTSIEPQNLVLKCYPQLVETF--ENMRNAKAKKRTANSR 481
Query: 530 SEES 533
+++
Sbjct: 482 KKKT 485
>gi|328792793|ref|XP_001120033.2| PREDICTED: flap endonuclease GEN-like [Apis mellifera]
Length = 713
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 165/584 (28%), Positives = 260/584 (44%), Gaps = 71/584 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + L L+ K +A+DLS W+V +T + PK +LR +FRT
Sbjct: 1 MGVKD-LWNILSPLCERKPLFELQGKTIAIDLSCWVVDSQTIVDHYVQPKMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
I L + G PVFV++G LK R D + ++ I + F K +
Sbjct: 60 IFLLMQ-GILPVFVLEGKAPALKYNTIAKRN-----DIRSGFQEKKSIQKKGRTQFKKIL 113
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI---- 176
EC E+LE G+ ++ GEAEA+CA LN +G VD CI+ DSD FL+GAK V +
Sbjct: 114 NECKEMLEYMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFCTSA 173
Query: 177 ---RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
R T + Y + IE L L R +I ++LL G D+D +G+ G+G + A++
Sbjct: 174 QGNRGGTGGAVDEYRLEKIEKVLQLGRNKMIVLALLCGCDYD-DGLNGVGKEAAMK---- 228
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
+ + N DI + IK+ + S + ++ S+ CS CGH G + H
Sbjct: 229 --------LFKIVENKDIIER---IKNWKTDTSLDRKEAELLNSNLCSSCGHSGKIQKHA 277
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K GC+ KCN N R++K +E I + K L NFPN
Sbjct: 278 K-----------SGCIDCGTVVKCN----NSYREKKALLLNE---ITLRKKALLVENFPN 319
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
E++ YL + D I W P + F+ H W+P Y +K+ + +
Sbjct: 320 QELIDEYLLRKDPVPKKID---IQWKQPHVNEFIAFMEQHLSWEPHYAFEKIFSLATRWQ 376
Query: 414 LREMATNPVQTLLCGQ--YEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK-YTA----- 465
L + + L Y +I++++ SY + WK S I +K Y A
Sbjct: 377 LIHLPNISAENRLVIHDLYIPKAIKKIRNIRSVASYEIIWKTDHSTIKKIKEYMALNNGS 436
Query: 466 -PVDSDLHLEEFMEYPQIHVDGDCWFLLTD-----ENMKLVHSAFPKKVDHFLQENE--R 517
++ D+ E PQ V C+ L + N+K+ KV + N+ R
Sbjct: 437 DEINEDILSELTSIEPQNAVQK-CYPELVEIFENARNVKVKKRQPKSKVKNITDGNDGKR 495
Query: 518 RELKRKRTSS---LRSEESNGKLESPKSKGVQLSITEFYRSAKV 558
+ KR++ + L + E+N K++ K +S+ E +R +
Sbjct: 496 KAEKRRQKKTEKVLTNVENNKKIDDFIMKDNPISLEESFRRISI 539
>gi|291387124|ref|XP_002710085.1| PREDICTED: Gen homolog 1, endonuclease [Oryctolagus cuniculus]
Length = 904
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 140/488 (28%), Positives = 227/488 (46%), Gaps = 43/488 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQNLGGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ + +S ++++ F
Sbjct: 60 -ISYLMQMDVKLVFVMEGEPPKLKADV-ISKRNQIRYGSSGKTLSQQT----GRSHFKLV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC++LL+ G+P ++A GEAEA+CA LN+EGYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLDLLDCLGIPWVQAAGEAEAMCAYLNAEGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
K+P +CY +S I+ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 VKDPHVDCYSMSSIKVQLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGTKRAHFKFSC 297
+L + W + SHS+ + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFDQ---------WNE-------KSHSNPQPAVTKKLAHCSVCSHPGSPKDHERSGC 277
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIV 357
C +N C + C C + +N K C FP E++
Sbjct: 278 RLC--KSNRYCEPHDYEYCCPCEWHQTECNRRLTGVEDNIKKKACRC----EGFPFQEVI 331
Query: 358 TMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREM 417
+L + I + P + F + W Y +K+L +L+ +M
Sbjct: 332 QEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY---DM 383
Query: 418 ATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLHLEEF 476
+ Q + I + +IR G + ++W+K ++ K V S + E
Sbjct: 384 IERKLGRWNSNQLQPIRIVKNRIRNGINCFEIEWEKPEHYVTEDKQNGQLVLSTIEEESL 443
Query: 477 ME--YPQI 482
E YP+I
Sbjct: 444 FEAAYPEI 451
>gi|350420439|ref|XP_003492509.1| PREDICTED: flap endonuclease GEN-like [Bombus impatiens]
Length = 724
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 161/580 (27%), Positives = 271/580 (46%), Gaps = 69/580 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + + + L+ K VA+D+S WIV +T ++ PK +LR +FRT
Sbjct: 1 MGVKD-LWNILSPLSERKPMFELQGKTVAIDMSCWIVDSQTVTDHSAQPKMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLKC 119
L + G PVFV++G LK + R RS A +G R Q F +
Sbjct: 60 AFLLMQ-GISPVFVLEGKAPTLKHKTIAKRNDVRSGFREKK--TASKG---GRTQ-FNRI 112
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--- 176
+ EC E+L+L G+ ++ GEAEA+CA LN +G VD CI+ DSD FL+GAK V +
Sbjct: 113 LNECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFCTS 172
Query: 177 ----RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
R ++ + Y + IE L L R +IA++LL G D++ +G+ G+G + A++ +
Sbjct: 173 TQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDYN-DGLNGVGKEAAMKLFK 231
Query: 233 NFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAH 292
++ +IL + + W T+ + + + ++ + CS CGH G + H
Sbjct: 232 IVNDKDILQRM---------KSW----RTDTTLDYKEAE--LLNPNLCSSCGHSGKLQKH 276
Query: 293 FKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFP 352
K GC++ KC+ S KE++ I + K L +FP
Sbjct: 277 TK-----------SGCIECGTTVKCHNSY-------KEKRALLLNEIALRKKALLIEDFP 318
Query: 353 NDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST- 411
N E++ +L + D I W P +DF+ + W+P Y +K+ P+++
Sbjct: 319 NQELIDEFLIKKASVPAKID---IQWKQPQVNEFIDFMERYLSWEPQYAFEKIFPLVTRW 375
Query: 412 --IYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVD- 468
++L ++ + T+L Y ++I++V+ SY + WK S I +K +D
Sbjct: 376 QLVHLPGISADNRLTML-DLYIPEAIKKVRNIRSVASYEIIWKTDHSTIKRLKEYIELDN 434
Query: 469 -----SDLHLEEFMEYPQIHVDGDCWFLLTD-----ENMKLVHSAFPKKVDHFLQENERR 518
+D+ E PQ V C+ L + N K KK+ + N++R
Sbjct: 435 VSDNGADIPSELASIEPQSAVQK-CYPELVEAFENARNAKTKKRPNKKKIQNDTDANDKR 493
Query: 519 ELKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKV 558
+ +++R ESN K++ SK S+ E +R +
Sbjct: 494 KAEKRRQKRNAKTESNRKIDEFISKNDPTSLEESFRRMSI 533
>gi|73980577|ref|XP_540093.2| PREDICTED: flap endonuclease GEN homolog 1 [Canis lupus familiaris]
Length = 908
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 222/459 (48%), Gaps = 46/459 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ ++R R+ I P + F
Sbjct: 60 -ISYLTLMDVKLVFVMEGEPPKLKADV-ISR--RNQIRYG--PSGKTWSQKAGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L + W +EE+ S + + + K +HCS C HPG+ + H + C+
Sbjct: 234 LLQRFTQ---------W-----SEESCS-DPQPLAIKKLAHCSVCSHPGSPKDHVRNGCK 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET----NFPND 354
C N C +P ++ C C+ +R + HE I V + I + FP
Sbjct: 279 LC--KTNRYC--EPHDYE-YCCPCDWHRTQ-----HERQLIAVENNIKKKACSCEGFPFY 328
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E+ +L + I + P + F + W Y +K+L +L+
Sbjct: 329 EVTQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPDHYACEKLLVLLTHY-- 381
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKK 453
+M + Q + I + +IR G + ++W+K
Sbjct: 382 -DMIERKLGRRNSNQLQPIRIVKSRIRNGIHCFEIEWEK 419
>gi|431911852|gb|ELK13996.1| Flap endonuclease GEN like protein 1 [Pteropus alecto]
Length = 903
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 229/491 (46%), Gaps = 49/491 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P L L K +AVDLS W+ + ++ K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKHPVHLHSLVGKTIAVDLSLWVCEAQSVKKMIGTVKKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R + +E+ + +++ K
Sbjct: 60 -ISYLTLMDVKLVFVMEGEPPELKADVINKR------NQIRYGPSEKTRSQKTGRSYFKS 112
Query: 120 V-QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V +EC+ELL+ G+P ++A GEAEA+CA LN+ GYVD C+T D D FL+GA+ V +
Sbjct: 113 VLRECLELLDCIGIPWVQAAGEAEAMCAYLNASGYVDGCLTDDGDTFLYGAQTVYRNFAM 172
Query: 179 NTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
+K+P +CY +S I + LGL R L+ +++L+G D+ GV G+G + AL+ +
Sbjct: 173 TSKDPHVDCYTMSSIMSELGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIHILKGQ 232
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSC 297
+L + W E + S +++ + + K +HCS C HPG+ +AH + C
Sbjct: 233 SLLQRFMQ---------WN-----ETSCSSNEQPVTVKKLAHCSVCSHPGSLKAHERNGC 278
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET----NFPN 353
E C + + C + + C C E +HE I V + I + FP
Sbjct: 279 ELCQTERH--CEPHGNEYCCPC--------EWHCAEHERQLIAVENNIKKKACSCEGFPF 328
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
E++ +L + A I P + F + W Y +K+L +L+
Sbjct: 329 HEVIQEFLSNKDKLVQA-----IRCQRPNLLLFQKFSLEKMEWPNHYACEKLLVLLTHY- 382
Query: 414 LREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHL 473
+M + Q + I + +IR G + + ++W+K K+ V +
Sbjct: 383 --DMTERKLGRRNANQLQPIRIVKNQIRNGVRCFQIEWEKPEHYDIEDKHGESVLQTIEE 440
Query: 474 EEFME--YPQI 482
E E YP+I
Sbjct: 441 ESLFEAAYPEI 451
>gi|149728133|ref|XP_001503466.1| PREDICTED: flap endonuclease GEN homolog 1 [Equus caballus]
Length = 908
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 154/546 (28%), Positives = 249/546 (45%), Gaps = 70/546 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLHGLAGKTIAVDLSLWVCEAQTVKKMIGTVLKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ VFV++G P LK+ R + + G F
Sbjct: 60 -ISYLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGKTWSQKTG-----RSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGTKRAHFKFSC 297
+L ++ W E +S+ +IK +HCS C HPG+ + H C
Sbjct: 234 LLERFNQ---------WN------EKSGYSNPQPQVIKKLAHCSVCSHPGSPKDHEHNGC 278
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKH--ENWW-IKVCSKIALETNFPND 354
+ C D C +P ++ C C +R E +++ + EN K CS FP
Sbjct: 279 KLCKTD--RYC--EPHDYE-YCCPCEWHRTEHDRQLNAVENGIKKKACSC----EGFPFP 329
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E++ +L + I + P + F + W Y +K+L +L+
Sbjct: 330 EVIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTRY-- 382
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLE 474
+M + Q + I + ++R G + V+W+K H
Sbjct: 383 -DMIERKLGRRNSNQLQPIRIVKTRVRNGVHCFEVEWEKPE----------------HYA 425
Query: 475 EFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
EY ++ L T E L +A+P+ V + + ++ E+K K+ S++ +
Sbjct: 426 IEDEYGEL-------VLQTIEEKSLFEAAYPEIV--AIYQKQKLEIKGKKQKSMKIKPKE 476
Query: 535 GKLESP 540
L P
Sbjct: 477 NNLPEP 482
>gi|156555588|ref|XP_001605190.1| PREDICTED: flap endonuclease GEN-like [Nasonia vitripennis]
Length = 736
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 150/552 (27%), Positives = 248/552 (44%), Gaps = 63/552 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + + L L+ K +A+DLS W+V ++ + PK HLR FFRT
Sbjct: 1 MGVKD-LWNILSPLSERKPLFELQGKAIAIDLSCWVVDSQSVTDNIAQPKMHLRNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
+ F FPVFV++G LK +A+ R+ I + + R++ F +
Sbjct: 60 -SYFLLHDIFPVFVLEGAAPTLKHNT-IAK--RNDIRHGR-EIKKTNKKAGRSR-FNYVL 113
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI---- 176
+EC E+L+ G+ +K GEAEA+CA LN +G VD CI+ DSD L+GAK V +
Sbjct: 114 KECEEMLKYMGLTCVKGYGEAEAMCAYLNEDGLVDGCISQDSDCLLYGAKIVYRNFCTST 173
Query: 177 ---RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
R + + Y + I+ L R +IA++L+ G D+D G+ G+G + AL+ +
Sbjct: 174 QGNRTTSSGSIDEYSMEKIQQVFNLGRNKMIALALMCGCDYD-EGLSGVGKEAALKLFKI 232
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
+DEIL + Q+ D K S+ ++ C+ CGH G R+H
Sbjct: 233 VDDDEILYRMK--------QWRTDSKFKRMEAELSNPNI-------CTNCGHSGKMRSHT 277
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K C C G K CS KE++ + + + K + NFPN
Sbjct: 278 KVGCVDC-------------GTKVKCS-----DSYKEKRTLISNELAIRKKALIIENFPN 319
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
E++ +L + D + W PM V F+ + W+P+Y K+ P+++
Sbjct: 320 QELIDEFLVRKGPVPSELD---LKWKKPMIVKFVGFMEKNVAWEPAYAFAKIFPLMTRWQ 376
Query: 414 LREMATNPVQTLLC--GQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDL 471
L + P++ L G + + I++++ SY + W + G+ T+P
Sbjct: 377 LLNLIEFPIEQRLTTPGVFVPEKIKKIRNIKSVASYEILWLDRDDILEGLTLTSPESDRE 436
Query: 472 HLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSE 531
EE L T E ++V +P + F + +R K+K+ + R
Sbjct: 437 DDEEESPDALSE-------LATIEPQEIVRKCYPMIIVEF---DAQRNAKKKKPTRSRKN 486
Query: 532 ESNGKLESPKSK 543
+++ E P K
Sbjct: 487 KTDENSEEPTEK 498
>gi|383854420|ref|XP_003702719.1| PREDICTED: flap endonuclease GEN-like [Megachile rotundata]
Length = 717
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 134/470 (28%), Positives = 218/470 (46%), Gaps = 52/470 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + + L+ K VA+D+S W+V +T ++ PK +LR +FRT
Sbjct: 1 MGVKD-LWNILSPLCERKPMFELQGKTVAIDISGWVVDSQTVTDNHAQPKMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
L PVFV++G LK A +A+ A +G R + +
Sbjct: 60 AFLLM-HEIQPVFVLEGKAPDLKHNA-IAKRNNIRNGFRERKTAGKG----RRPQLNRIL 113
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI---- 176
+EC ELL G+ ++ +GEAEA+CA LN +G V CI+ DSD FL+GAK V +
Sbjct: 114 KECKELLGYMGLACIQGQGEAEAMCAHLNEDGLVHGCISQDSDCFLYGAKVVYRNFCTSA 173
Query: 177 ---RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
R T + Y I IE L L R +IA++LL G D+D G+ G+G + A++ +
Sbjct: 174 QGNRGGTGGAVDEYSIEKIEKALDLGRNKMIALALLCGCDYD-EGLNGVGKEAAMKLFKI 232
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
+++I+ L + W T++ + H + ++ S+ CS CGH G + H
Sbjct: 233 VKDEDIIERL---------KSW----RTDDTLDHKESQ--LLSSNVCSSCGHSGKVQKHT 277
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K C C G + KCN S KE++ I + K L +FP
Sbjct: 278 KSGCIDC------GTV-----VKCNNSY-------KEERALILNEISLRKKALLVPDFPK 319
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
E++ +L + T D I W P + +DF+ H W+P Y +K+ P+ +
Sbjct: 320 QELIDEFLIRKDSVPTKLD---IQWKQPQVDKFIDFVERHLSWEPQYAFEKIFPLATRWQ 376
Query: 414 LREMATNPVQT-LLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK 462
L + +++ + + + I++++ Y + WK IS +K
Sbjct: 377 LLHLPNISIESRFIPDLFIPEQIKKIRNIRSVACYEIIWKTDHDVISRLK 426
>gi|327261246|ref|XP_003215442.1| PREDICTED: flap endonuclease GEN homolog 1-like [Anolis
carolinensis]
Length = 631
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 156/302 (51%), Gaps = 23/302 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS-VPKPHLRLTFFR 59
MGV W +L+P L L+ K +AVDLS W+ + + K V KPHLR FFR
Sbjct: 1 MGVTS-LWQILEPVKEHVPLSSLKGKTLAVDLSLWVCEAQMVKKMMGIVKKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
+L G VFV++G LK+ R + P + G
Sbjct: 60 LSSL-TLMGIHLVFVMEGDAPKLKANTMEKR-----KEIRFGPSRKPGTTRTGRSHLKSF 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE G+P ++A GEAEA+CA LNS GYVDACIT D DAFL+GA+ V + N
Sbjct: 114 LKECLEMLECLGVPWVQAAGEAEAMCAYLNSNGYVDACITNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY IS IE LG R+ LI +++L+G D+ GV G+G + AL+ +
Sbjct: 174 TKDPHVDCYSISAIEEKLGCSRESLIGLAVLLGCDYLPKGVPGVGKEQALRLINTLKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L +YW D S +MP+ K S+C+ C HPG+ + H + C
Sbjct: 234 LLQRF---------EYWKD-----HFQSGDIPTMPVKKLSYCAVCHHPGSHKEHERTGCH 279
Query: 299 YC 300
C
Sbjct: 280 LC 281
>gi|348574836|ref|XP_003473196.1| PREDICTED: flap endonuclease GEN homolog 1-like [Cavia porcellus]
Length = 906
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 135/458 (29%), Positives = 216/458 (47%), Gaps = 48/458 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + ++ K +V KPHLR FFR
Sbjct: 1 MGVN-DLWQILEPAKQHIHLQNLSGKTIAVDLSLWVCEAQSVRKMMGTVRKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLK 118
I+ + VFV++G P LK+ R R + T + G F
Sbjct: 60 -ISYLMQMDIKLVFVMEGEPPKLKADVMNKRNQIRYGLSGKTW-SQKSG-----RSHFKS 112
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC+E+LE G+P ++A GEAEA+CA L++ G VD C+T D DAFL+GA+ V +
Sbjct: 113 VLRECLEMLESLGIPWVQAAGEAEAMCAHLDAGGQVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 179 NTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N K+P +CY S I+ LGL R L+A+++L+G D+ GV G+G + AL+ +Q+ +
Sbjct: 173 NPKDPHVDCYTASSIKNKLGLDRDALVALAVLLGCDYLPKGVPGVGREQALKLIQSLKGE 232
Query: 238 EILNILHKIGNGDIPQYWGDI---KSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFK 294
+L + W +I S ++ V+ K +HCS C HPG+ + H +
Sbjct: 233 SLLQRFDQ---------WNEISRHSSLQQQVAK--------KPAHCSVCAHPGSPKDHER 275
Query: 295 FSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPND 354
C C +D +P ++ C C ++KE + K CS FP
Sbjct: 276 HGCWLCRSDR----YCEPHDYEYRCP-CEWHQKEPPNGVESSVMRKACSC----EGFPFH 326
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E++ +L + I + P + F + W Y +K+L +LS
Sbjct: 327 EVIQEFLLNKDKLVGV-----IRYQRPDLLLFQRFALEKMEWPNPYACEKLLVLLSHY-- 379
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWK 452
+M + Q + I + +IR G + ++W+
Sbjct: 380 -DMIERKLGRRNSKQLQPVRIVKPRIRNGVHCFEIEWE 416
>gi|363732508|ref|XP_419963.2| PREDICTED: flap endonuclease GEN homolog 1 [Gallus gallus]
Length = 639
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 140/536 (26%), Positives = 239/536 (44%), Gaps = 63/536 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L+ K +AVDLS W+ + +T K V KPHLR FFR
Sbjct: 1 MGVNN-LWQILEPVRQPVSLSSLKGKTLAVDLSLWVCEAQTVKKMIGVVTKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
+ F G VFV++G LK+ R ++ VA G +F
Sbjct: 60 -YSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGASNKHGVARTG-----RSSFKSI 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC++LLE G+P ++A GEAEA+CA LN++G+VD CIT D D FL+GA+ V + N
Sbjct: 114 LKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+KEP +CY +S I+ LG R+ LI +++L+G D+ G+ G+G + AL+ ++
Sbjct: 174 SKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRGQN 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMI--KSSHCSFCGHPGTKRAHFKFS 296
+L + W + S D + P++ + HCS C HPG+ + H +
Sbjct: 234 LLQRFEQ---------WKE-------QSEHDNNPPLVVKRVVHCSECHHPGSYKEHERGG 277
Query: 297 CEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEI 356
C++C ++ C + C C + ++ +N + K FP E+
Sbjct: 278 CKFC--ESTRYCKPSDSKYCCPCEWHQLEQVKQASAVEDN----IRKKAKSCEGFPFSEV 331
Query: 357 VTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
+ ++ N + P F W Y +K+L +L+ + +
Sbjct: 332 IQEFIVNKNEL-----NKIMECKRPNLLSFQIFASEKMEWSKHYACKKLLVLLTRYDMIQ 386
Query: 417 MATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEF 476
+ + + Q + I + +++ G + ++W+K + P+D
Sbjct: 387 RKSGYIDS---KQLQAIRIVKTRVKNGIPCFEIEWQKPEHYVDA--EDEPMD-------- 433
Query: 477 MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
+HV +T E L +A+P V + E K+++ R +E
Sbjct: 434 -----LHV-------VTIEEESLFQAAYPDVVSLYQMEKSEALAKKQKNKKNRPKE 477
>gi|351699459|gb|EHB02378.1| Flap endonuclease GEN-like protein 1 [Heterocephalus glaber]
Length = 910
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/540 (26%), Positives = 235/540 (43%), Gaps = 69/540 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV G W +L+P + L L + +AVDLS W+ + ++ K +V KPHLR FFR
Sbjct: 1 MGVNG-LWQILEPVKQHVHLRSLSGQTIAVDLSVWVCEAQSVRKMVGTVTKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
+L + VFV++G P+ LK+ R P + G F
Sbjct: 60 VSHLM-QMDIRLVFVMEGEPAKLKAGVMSKRN-----QMRYGPSGKTGSQRTGRSRFKLV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE G+P ++A GEAEA+CA LN G D C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGVPWVQAAGEAEAMCAHLNGTGRADGCLTDDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
++P +CY +S I+ LGL R L+ +++L+G D+ + G+G + AL +Q +
Sbjct: 174 AQDPHVDCYTMSSIKNKLGLDRDALVGLAILLGCDYLPKAIPGVGKEQALTLIQILKGES 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E HS + +HCS C HPG+ + H + C+
Sbjct: 234 LLQRFNQ---------WN------EKSCHSVPQPEAAELAHCSVCSHPGSLKDHERNGCQ 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET----NFPND 354
C ++ C + C C E Q KH+ I V + I + FP
Sbjct: 279 LC--KSSRYCEPHDYEYCCPC--------EWHQTKHDRQLIGVENNIKKKACSCEGFPFH 328
Query: 355 EIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
E++ +L + I + P + F + W Y +K+L +L+ +
Sbjct: 329 EVIQEFLLNKDKLVRV-----IRYQRPDLLLFQRFTLEKMEWPNHYACKKLLVLLTRYDM 383
Query: 415 REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLE 474
E + Q + I + +IR G + ++W
Sbjct: 384 MERKLGRKNS---DQLQPIRIVKPRIRNGVHCFEIEW----------------------- 417
Query: 475 EFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
E E+ + +LT E L +A+P+ V + +N + +++ ++ +E N
Sbjct: 418 EMPEHFAVEDGEHGELILTVEEESLFEAAYPEIVAIYQNQNLEAKGRKQNNMKIKPKEDN 477
>gi|326916541|ref|XP_003204565.1| PREDICTED: flap endonuclease GEN homolog 1-like, partial [Meleagris
gallopavo]
Length = 897
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 132/457 (28%), Positives = 216/457 (47%), Gaps = 41/457 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L+ K +AVDLS W+ + +T K V KPHLR FFR
Sbjct: 1 MGVTN-LWQILEPVRQPVSLSSLKGKTLAVDLSLWVCEAQTVKKMIGVVTKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
+ F G VFV++G LK+ R ++ A G F
Sbjct: 60 -YSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEMRYGASNKHGAARTG-----RSLFKSI 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC++LLE G+P ++A GEAEA+CA LN++G+VD CIT D D FL+GA+ V + N
Sbjct: 114 LKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+KEP +CY +S I+ LG R+ LI +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 SKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLRGQN 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMI--KSSHCSFCGHPGTKRAHFKFS 296
+L + W + S D + P++ + HCS C HPG+ + H +
Sbjct: 234 LLQRFEQ---------WRE-------QSEHDNNPPLVVKRVVHCSDCHHPGSYKEHERSG 277
Query: 297 CEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEI 356
C++C ++ C KP K NC C ++ E + K+ + K FP E+
Sbjct: 278 CKFC--ESTRYC--KPSDSK-NCCPCEWHQLE-QVKQASAVEDNIRKKANSCEGFPFSEV 331
Query: 357 VTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
+ +L N + P F W Y +K+L +L+ + +
Sbjct: 332 IQEFLVNKNKL-----NKIMECKRPNLLSFQIFASEKMEWAKHYACKKLLVLLTRYDMIQ 386
Query: 417 MATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKK 453
+ + + Q + I + +++ G + ++W+K
Sbjct: 387 RKSGYIDS---KQLQAIRIVKTRVKNGVPCFEIEWQK 420
>gi|340709477|ref|XP_003393334.1| PREDICTED: flap endonuclease GEN-like [Bombus terrestris]
Length = 725
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 156/580 (26%), Positives = 271/580 (46%), Gaps = 68/580 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W++L P + + + L+ K VA+D+S WIV +T ++ PK +LR +FRT
Sbjct: 1 MGVKD-LWNILSPLSERKPMFELQGKTVAIDMSCWIVDSQTVTDHSAQPKMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
L + G PVFV++G LK + +A+ A +G R Q F + +
Sbjct: 60 AFLLMQ-GISPVFVLEGKAPTLKHKT-IAKRNDVRSGFREKKTASKG---GRTQ-FNRIL 113
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CI-- 176
EC E+L+L G+ ++ GEAEA+CA LN +G VD CI+ DSD FL+GAK V + C
Sbjct: 114 NECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKTVYRNFCTST 173
Query: 177 ---RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
R ++ + Y + IE L L R +IA++LL G D++ +G+ G+G + A++ +
Sbjct: 174 QGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDYN-DGLNGVGKEAAMKLFKI 232
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
++++IL + + W T+ + + + ++ + CS CGH G + H
Sbjct: 233 VNDEDILERM---------KSW----RTDTTLDYKE--AELLNPNLCSSCGHSGKLQKHT 277
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K GC++ KC+ S KE++ I + K L +FPN
Sbjct: 278 K-----------SGCIECGTTVKCHDSY-------KEKRVLLLNEIALRKKALLIEDFPN 319
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST-- 411
E++ +L + D I W P +DF+ + W+P Y +K+ P+++
Sbjct: 320 QELIDEFLIKKASVPEKID---IQWKQPQVNEFIDFMERYLSWEPQYAFEKIFPLVTRWQ 376
Query: 412 -IYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVD-- 468
++L ++ + T+ Y ++I++V+ SY + WK S I +K +D
Sbjct: 377 LVHLPGISADNRLTMF-DLYIPEAIKKVRNIRSVASYEIIWKTDHSTIKRLKEYITLDNV 435
Query: 469 ----SDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKR 524
+D+ E PQ V C+ L + ++ K+ + +N+ +KR
Sbjct: 436 SDNGADIPFELASIEPQSAVQK-CYPELVEAFENARNAKTKKRPNKKKIQNDTDASDKKR 494
Query: 525 TSSLRSEESNGKLESPK------SKGVQLSITEFYRSAKV 558
+ R ++ N K E+ + SK S+ E +R +
Sbjct: 495 KAEKRRQKRNAKTENNRKIDEFVSKNDPTSLEESFRRMSI 534
>gi|410926473|ref|XP_003976703.1| PREDICTED: flap endonuclease GEN homolog 1-like [Takifugu rubripes]
Length = 827
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 154/565 (27%), Positives = 256/565 (45%), Gaps = 92/565 (16%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI--VQHETAIKKNSVPKPHLRLTFF 58
MGV + W +++P L L K +AVDLS W+ QH A+ V KPHLR FF
Sbjct: 1 MGVH-ELWSIIEPVRESVPLYSLSGKTLAVDLSLWVCEAQHVQAMM-GRVNKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQ-------ARLARFYRSTIDASTLPVAEEGILVE 111
R +L G VFV++G +K++ AR F +++ ST
Sbjct: 59 RVSSLTL-MGIKLVFVMEGEAPKIKAETMSKRTLARYGGFKKTSSTTST----------- 106
Query: 112 RNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKC 171
F ++EC ++L++ G+P + A GEAEA+CA L+S+G VD CIT D DAFL+GA+
Sbjct: 107 GRGRFKAVLKECADMLDILGVPWVTAAGEAEAMCAFLDSQGLVDGCITNDGDAFLYGAQI 166
Query: 172 VVKCIRPNTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V + N+K+P +CY S ++ L L R++L+ +++L+G D+ G+ G+G + AL+
Sbjct: 167 VYRNFHTNSKDPLVDCYKTSRVQTELHLSRENLVGLAVLLGCDYIPKGIPGVGKEQALKL 226
Query: 231 VQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKR 290
++ E +L + W EE S + E + + K +HC C HPG+ +
Sbjct: 227 LRMLKEQTLLQWFTQ---------W------EEQNSGTPEVV-LKKVAHCPVCHHPGSAK 270
Query: 291 AHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETN 350
AH + C C +N C P F C C+ +R E+ ++ ++ + K +
Sbjct: 271 AHERGGCVLC--KSNRFC--HPQDFDYECP-CDWHRYER-TRQVSSFETNIRKKTMASPH 324
Query: 351 FPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQP--WQPSYIRQKMLPM 408
FP +I++ +L + D P + ML H+ W Y +K+L +
Sbjct: 325 FPFTKIISEFL-------ISKDKPVSHFKRRQPNMLSMQKFAHEKMEWPKHYTSEKVLVL 377
Query: 409 LSTI------YLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK 462
L+ Y R+++T Q + I + ++R G + + W+
Sbjct: 378 LTYAELMNKKYGRDVST---------QIKPLRILKSRVRNGVPCFEIVWRTP-------- 420
Query: 463 YTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKR 522
E +P D + T E L AFP+ V+ +L++ E K+
Sbjct: 421 ------------EHYSFPDQQPAEDHHEVRTIEEATLFRVAFPEVVEKYLKDKSMAEGKK 468
Query: 523 KRT--SSLRSEESNGKLESPKSKGV 545
R+ S R E + ++ S G+
Sbjct: 469 TRSKKSKWRKEAPSDQISDDISDGI 493
>gi|344246628|gb|EGW02732.1| Flap endonuclease GEN-like 1 [Cricetulus griseus]
Length = 317
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 26/306 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVN-DLWQILEPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIGTVVKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ S P +++ F
Sbjct: 60 -ISYLIQMNVKLVFVMEGEPPKLKADV-ISKRTQTRYGPSGKPCSQK----TGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE G+P ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQMVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY S I++ LGL R L+ +++L+G D+ GV G+G + AL+ ++
Sbjct: 174 TKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLRILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGTKRAHFKFSC 297
+L ++ W EE S + P K+ +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----IEEPCSSIPQ--PAAKNVAHCSVCSHPGSPKDHERNGC 277
Query: 298 EYCIND 303
+C +D
Sbjct: 278 TFCKSD 283
>gi|410955794|ref|XP_003984535.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Felis catus]
Length = 913
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 220/467 (47%), Gaps = 52/467 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLT--- 56
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR +
Sbjct: 1 MGVND-LWQILEPVKQHIHLHNLGGKTIAVDLSLWVCEAQTVKKMIGTVLKPHLRXSKSS 59
Query: 57 ------FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILV 110
FR I+ VFV++G P LK+ ++R ++ S +++
Sbjct: 60 XDINELIFR-ISYLTLMDVKLVFVMEGEPPKLKADV-ISRRNQTRYGPSGKTWSQKT--- 114
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
F ++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+
Sbjct: 115 -GRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQ 173
Query: 171 CVVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
V + NTK+P +CY + I++ LGL R+ L+ +++L+G D+ GV G+G + AL+
Sbjct: 174 TVYRNFSMNTKDPHVDCYTMPSIKSKLGLDREALVGLAILLGCDYLPKGVPGVGKEQALK 233
Query: 230 FVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS-SHCSFCGHPGT 288
+Q +L + W E S SD +IK +HCS C HPG+
Sbjct: 234 LIQILKGQSLLQRFTQ---------WN------EKPSFSDPQPVVIKKLAHCSVCSHPGS 278
Query: 289 KRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKH--ENWWIKVCSKIA 346
+ H + C+ C D +P ++ C C +R E +++ EN + K
Sbjct: 279 PKDHVRNGCKLCKTDR----YCEPHDYE-YCCPCEWHRAEHDRQLSAVEN---SIKKKAC 330
Query: 347 LETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKML 406
FP E++ +L + I + P + F + W Y +K+L
Sbjct: 331 GCEGFPFHEVIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPSHYACEKLL 385
Query: 407 PMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKK 453
+L+ +M + Q + I + +IR G ++W+K
Sbjct: 386 VLLTHY---DMIERKLGRRNSNQLQPIRIVKTRIRNGIHCLEIEWEK 429
>gi|449498163|ref|XP_002196947.2| PREDICTED: flap endonuclease GEN homolog 1 [Taeniopygia guttata]
Length = 617
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 159/598 (26%), Positives = 258/598 (43%), Gaps = 68/598 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + + LR K +AVDLS W+ + +T K V KPHLR FFR
Sbjct: 1 MGVT-YLWQILEPVRQPVNMSSLRGKTLAVDLSLWVCEAQTVKKMVGVVTKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
+ F G VFV++G LK+ R + P + G + F
Sbjct: 60 -FSFFTSMGIKLVFVMEGEAPRLKADTMSKRN-----EMRYGPSKKAGAVRTGRSLFKAM 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE G+P ++A GEAEA+CA LN++G VD C+T D D FL+GA+ V + N
Sbjct: 114 LKECLEMLECLGVPWVQAAGEAEAMCAYLNAKGLVDGCLTNDGDVFLYGAQTVYRNFAMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
K+P + Y +S I+ LG R+ LI +++L+G D+ GV G+G + AL+ ++ +
Sbjct: 174 AKDPHLDSYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLQGEN 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSS-HCSFCGHPGTKRAHFKFSC 297
+L + W D + D + ++K HCS C HPG+ + H C
Sbjct: 234 LLQRFEQ---------WKD------QFHYDDNPLLVVKRVIHCSECHHPGSYKDHEHNGC 278
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET-NFPNDEI 356
++C + C K D C C + E+ K N K A+ FP E+
Sbjct: 279 KFC---ESARCCKPHDSKLC----CPCEWHQWERVKQANSVEDSIRKKAMSCEGFPFSEV 331
Query: 357 VTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
+L N + P F W Y +K+ +L+ + +
Sbjct: 332 TQEFLVNKNKLTNIKEC-----QRPNLLSFQLFASEKMEWPKHYACKKLFALLTRYDMIQ 386
Query: 417 MATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEF 476
+ + + Q + I + +++ G + ++W+K Y P D + L
Sbjct: 387 RKSGYIDS---KQLQAIRIVKTRVKNGIPCFEIEWQKPEH------YVDPEDEPVEL--- 434
Query: 477 MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN-- 534
F++T E L +A+P V + E K+++ RSEE
Sbjct: 435 -------------FVVTVEEEILFQAAYPDVVALYEVEKSNILQKKQKKKKDRSEEKALP 481
Query: 535 GKLESPKSKGVQLSITEFYRSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLS 592
+ S Q++I +R VQ S +D Q + S E++ V+ P+ S
Sbjct: 482 NSCDEITSLLSQINIKPTHRILPVQH---SMSDTKAPPEGQTQQRSTESKDVALPSSS 536
>gi|432945552|ref|XP_004083655.1| PREDICTED: flap endonuclease GEN homolog 1-like [Oryzias latipes]
Length = 783
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 211/464 (45%), Gaps = 57/464 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI--VQHETAIKKNSVPKPHLRLTFF 58
MGV W +++P L L K +AVDLS W+ QH A+ V KPHLR FF
Sbjct: 1 MGVHD-LWSIVEPVRESVSLYSLSGKTLAVDLSLWVCEAQHVQAMM-GRVTKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQ-------ARLARFYRSTIDASTLPVAEEGILVE 111
R +L + G VFV++GT LK++ AR +F T ++
Sbjct: 59 RVSSL-SLMGIKLVFVMEGTAPKLKAETMSKRTKARYGQFKNPTKCSTNTSRGR------ 111
Query: 112 RNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKC 171
F ++EC E+L+ G+P + A GEAEA+CA L+S+G VD CIT D DAFL+GA+
Sbjct: 112 ----FNSILKECAEMLDYLGVPWVMAAGEAEAMCAYLDSQGLVDGCITNDGDAFLYGART 167
Query: 172 VVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V + ++K+P +CY S ++ L L R++L+ +++L+G D+ G+ G+G + AL+
Sbjct: 168 VYRNFNMSSKDPQIDCYQTSRVQTELNLSRENLVGLAILLGCDYIPKGIPGVGKEQALRL 227
Query: 231 VQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKR 290
+Q D +L + W + T V + K HC+ C HPG+
Sbjct: 228 IQALKGDSLLQRFIQ---------WREENPTVSGVV-------VKKVPHCNICRHPGSAT 271
Query: 291 AHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE--NWWIKVCSKIALE 348
AH + C C ++ + C + ++C C ++ H+ ++ + K
Sbjct: 272 AHGRQGCRLC--NSQQYCQPQDFDYQCPCDW------HSHEQTHQVVSFEANIKKKTLCS 323
Query: 349 TNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPM 408
FP EI+ +L + + P M+ F W Y +K+L +
Sbjct: 324 PQFPFTEIINEFLVSKDKPVS-----HFKRRQPNMMMMQKFAYEKMEWPKHYTSEKVLVL 378
Query: 409 LSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWK 452
L+ E+ T + Q + I + ++R + V W+
Sbjct: 379 LT---YTELMNRKYGTGVSSQIKPIRIVKSRVRNAVACFEVIWR 419
>gi|405969706|gb|EKC34660.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 955
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 138/242 (57%), Gaps = 8/242 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLRLTFFR 59
MGV W +L+P + L L+ + +AVDLS W+ + + + + V KP+LR FFR
Sbjct: 1 MGVTN-LWQVLEPVQAHQTLSSLKGQTLAVDLSIWVCETQCVKQMQGVVSKPYLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
+L + G VFV++G LK Q R + +G + F C
Sbjct: 60 ISHLL-QLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQG----GRRNFNAC 114
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC E+L+ G+P + + GEAEA CA LN+ G VDAC+T D DAFL+GA+ V + N
Sbjct: 115 LKECCEMLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYGARTVYRNFTMN 174
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P ECYC++D+E LGL R+ L+AM+LL+G D+ GV G+G++ A++ +
Sbjct: 175 TKDPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERAIKMMNALPSSN 234
Query: 239 IL 240
+L
Sbjct: 235 VL 236
>gi|270011949|gb|EFA08397.1| hypothetical protein TcasGA2_TC006044 [Tribolium castaneum]
Length = 591
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 144/521 (27%), Positives = 224/521 (42%), Gaps = 74/521 (14%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ W LL P+ + L L+ K VA+DLS W+ + + + P+ +LR +FRT
Sbjct: 1 MGIK-DLWTLLAPFGERKPLYELQGKTVAIDLSCWVCESQNVTEYTVQPRMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
L VFV++G LK + AR A + G + F +
Sbjct: 60 CYLLL-MDVNVVFVLEGRAPELKYKTIAARNALQFKGAK----PKNGAKTKDRSRFNHTL 114
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
+ C E+L L G+ + +GEAEALCAQLN G VD I+ DSD F +GA+ V + +
Sbjct: 115 KRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFAYGARVVYRNFSISQ 174
Query: 181 K-------EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + Y IS L R +IA++LL G+D+ +GV GIG D+ ++F
Sbjct: 175 QGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYS-DGVHGIGKDSVVKFFNL 233
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
+DEIL L +S A + D + + C+ CGH G +AH
Sbjct: 234 VKDDEILQRL---------------RSWRHASIYDDLEAKICDKNRCTSCGHSGKVQAHA 278
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K C C N+GC + + E+ + K+E + + SK L+ NFP+
Sbjct: 279 KKGCIVC--KTNQGC-------------GSSYKNERLEIKNE---LNMRSKALLDPNFPD 320
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
+ ++ +L G + + W P + F V + W+ Y +K P+L+
Sbjct: 321 ENLINEFL----GQKSTVSELDLRWRKPDLANFIKFTVKYLTWEEIYGFEKFFPILTRWQ 376
Query: 414 L--REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDL 471
L + + Q ++ ++ I++ + G SY + W+ SDL
Sbjct: 377 LLHYDQINDKTQGIVSPKF----IKKRRTLKGIASYEIVWEDKGCF-----------SDL 421
Query: 472 HLEEFMEYPQIHVDGDCWFLL-TDENMKLVHSAFPKKVDHF 511
EE Q+ GD L T E LV AFP V F
Sbjct: 422 IPEE-----QLEQFGDLEKLWSTVEPQNLVERAFPHLVQEF 457
>gi|189239788|ref|XP_969346.2| PREDICTED: similar to XPG-like endonuclease CG10670-PA [Tribolium
castaneum]
Length = 565
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 144/521 (27%), Positives = 224/521 (42%), Gaps = 74/521 (14%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ W LL P+ + L L+ K VA+DLS W+ + + + P+ +LR +FRT
Sbjct: 1 MGIK-DLWTLLAPFGERKPLYELQGKTVAIDLSCWVCESQNVTEYTVQPRMYLRNLYFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
L VFV++G LK + AR A + G + F +
Sbjct: 60 CYLLL-MDVNVVFVLEGRAPELKYKTIAARNALQFKGAK----PKNGAKTKDRSRFNHTL 114
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
+ C E+L L G+ + +GEAEALCAQLN G VD I+ DSD F +GA+ V + +
Sbjct: 115 KRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFAYGARVVYRNFSISQ 174
Query: 181 K-------EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + Y IS L R +IA++LL G+D+ +GV GIG D+ ++F
Sbjct: 175 QGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYS-DGVHGIGKDSVVKFFNL 233
Query: 234 FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHF 293
+DEIL L +S A + D + + C+ CGH G +AH
Sbjct: 234 VKDDEILQRL---------------RSWRHASIYDDLEAKICDKNRCTSCGHSGKVQAHA 278
Query: 294 KFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPN 353
K C C N+GC + + E+ + K+E + + SK L+ NFP+
Sbjct: 279 KKGCIVC--KTNQGC-------------GSSYKNERLEIKNE---LNMRSKALLDPNFPD 320
Query: 354 DEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413
+ ++ +L G + + W P + F V + W+ Y +K P+L+
Sbjct: 321 ENLINEFL----GQKSTVSELDLRWRKPDLANFIKFTVKYLTWEEIYGFEKFFPILTRWQ 376
Query: 414 L--REMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDL 471
L + + Q ++ ++ I++ + G SY + W+ SDL
Sbjct: 377 LLHYDQINDKTQGIVSPKF----IKKRRTLKGIASYEIVWEDKGCF-----------SDL 421
Query: 472 HLEEFMEYPQIHVDGDCWFLL-TDENMKLVHSAFPKKVDHF 511
EE Q+ GD L T E LV AFP V F
Sbjct: 422 IPEE-----QLEQFGDLEKLWSTVEPQNLVERAFPHLVQEF 457
>gi|395509172|ref|XP_003758878.1| PREDICTED: uncharacterized protein LOC100916082 [Sarcophilus
harrisii]
Length = 978
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 155/304 (50%), Gaps = 54/304 (17%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFF 58
MGV W +L+P R L L+ K +AVDLS W+ + A+KK V KPHLR FF
Sbjct: 1 MGVN-DLWQILEPVKRHAPLRSLQGKTLAVDLSLWVCE-ALAVKKMVGIVVKPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKS--------------QARLARFYRSTIDASTLPVA 104
R I+ +FV++G LK+ Q R +F RS+ A
Sbjct: 59 R-ISSLTLMEVKLLFVMEGDAPKLKADVMGKRNETRFGAPQNRAHKFTRSSFKA------ 111
Query: 105 EEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
++EC++LLE G+P ++A GEAEA+CA L++ GYVD C+T D DA
Sbjct: 112 --------------VLKECLDLLECLGVPWVQASGEAEAMCAYLDAHGYVDGCLTDDGDA 157
Query: 165 FLFGAKCVVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
FL+GA+ V + N K+P +CY +S I+ LGL R LI +++L+G D+ GV G+G
Sbjct: 158 FLYGAQTVYRNFTMNAKDPHVDCYTMSSIKRDLGLDRDTLIGLAVLLGCDYLPKGVPGVG 217
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFC 283
+ AL+ V++ N+L K W EE+ S P+ K +HC+ C
Sbjct: 218 KELALKLVRSLKGQ---NLLQKF------DQW-----KEESHSPDLPPAPVRKPAHCNVC 263
Query: 284 GHPG 287
HPG
Sbjct: 264 AHPG 267
>gi|297668153|ref|XP_002812316.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Pongo abelii]
Length = 912
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 141/543 (25%), Positives = 244/543 (44%), Gaps = 71/543 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLCNLAGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ ++ +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQTRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +L G+P ++A GE EALCA L +VD C+T D D FL
Sbjct: 114 LRECLHMLXCLGIPWVQAAGEPEALCAYLIVGDHVDGCLTNDGDTFLXXXXXXYVLFEDX 173
Query: 180 TKEPF-----ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
TK +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKSVLXDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQIL 233
Query: 235 SEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFK 294
+L ++ W E + + S + + K +HCS C HPG+ + H +
Sbjct: 234 KGQSLLQRFNR---------WN-----ETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHER 279
Query: 295 FSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNF 351
C C +D + C +P ++ C C +R E +++ +E N K C F
Sbjct: 280 NGCRLCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLNEVENNIKKKACCC----EGF 330
Query: 352 PNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST 411
P E++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 PFHEVIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPSHYACEKLLVLLTH 385
Query: 412 IYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDL 471
+M + + Q + I + +IR G + ++W+K
Sbjct: 386 Y---DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP----------------- 425
Query: 472 HLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSE 531
E + + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +
Sbjct: 426 --EHYAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPK 478
Query: 532 ESN 534
E+N
Sbjct: 479 ENN 481
>gi|390365680|ref|XP_003730870.1| PREDICTED: uncharacterized protein LOC100889325 [Strongylocentrotus
purpuratus]
Length = 1543
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 139/258 (53%), Gaps = 27/258 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHE-TAIK--KNSVPKPHLRLTF 57
MGV W +L P E ++ L+ K++AVDL+ W+V+ + T +K + V KPHLR F
Sbjct: 1 MGVQN-LWQILAPVKSEESIESLKGKKIAVDLAIWLVESQVTGMKMMQGRVSKPHLRNLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK-------SQARLARFYRSTIDASTLPVAEEG--- 107
FR N F + G VFV+DGTP LK ++ RL
Sbjct: 60 FRASN-FLRLGVKLVFVIDGTPPELKWEEIARRNEVRLGGGGGGARGGGGGWRGGGRGGW 118
Query: 108 -----------ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDA 156
+ F ++EC ELLEL G+P +++KGEAEA+CA LNS G VD
Sbjct: 119 RGRGRGGGGGGVRKASRSHFSGWLKECQELLELMGVPCIQSKGEAEAMCAALNSAGIVDG 178
Query: 157 CITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDL 216
C+T D DAFL+GA+ V + + T + +CY + DIE L L R L+A+++L+G D+
Sbjct: 179 CMTEDGDAFLYGARIVYRNLNMATGK-VDCYRMDDIETKLDLDRGRLVALAILLGCDYLP 237
Query: 217 NGVQGIGLDTALQFVQNF 234
GV G+G + A++F+++
Sbjct: 238 KGVPGVGKEVAMRFMKSL 255
>gi|74196654|dbj|BAE34428.1| unnamed protein product [Mus musculus]
Length = 739
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 210/473 (44%), Gaps = 71/473 (15%)
Query: 72 VFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFG 131
VFV++G P LK+ R P + F ++EC+E+LE G
Sbjct: 6 VFVMEGEPPMLKADVISKR-----TQTRYGPSGKSRSQKTGRSHFKSVLRECLEMLECLG 60
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP-FECYCIS 190
MP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + NTK+P +CY IS
Sbjct: 61 MPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPHVDCYTIS 120
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGD 250
I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q F +L ++
Sbjct: 121 SIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQSLLQRFNQ----- 175
Query: 251 IPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLK 310
W E+ +S P K HCS C HPG+ + H + C C +D + C
Sbjct: 176 ----W-----IEDPCYSVPQSAPK-KVVHCSVCSHPGSPKDHERNGCILCKSD--KYCEP 223
Query: 311 KPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTA 370
+ C C + + N K CS FP E++ +L N
Sbjct: 224 HDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSC----EGFPFHEVIQEFLLNKNKMLKP 279
Query: 371 TDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQY 430
I++ P + F V W Y +K+L +L+
Sbjct: 280 -----ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLT-------------------- 314
Query: 431 EFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLH-LEEFMEYPQIHV--DG 486
+D I R ++G +K ++ + ++ P V + +H LE E P+ +V DG
Sbjct: 315 RYDMIER---KHG--------RKTSNQLQPIRIVKPRVRNGVHCLEIEWEKPEHYVVEDG 363
Query: 487 DC--WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKL 537
D LLT E L +A+P V + + + E K ++ S++++ L
Sbjct: 364 DPGKLSLLTMEEASLFEAAYPDAVAVY--QKQLSETKGRKQKSMKNKPKGSHL 414
>gi|47026996|gb|AAT08715.1| nucleotide excision repair-like protein [Hyacinthus orientalis]
Length = 166
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
Query: 308 CLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGT 367
L+ G N R K ++ ENW IKVC +IA E NFPN EI+ MYLC N+G
Sbjct: 17 ALRSHLGLDVNAPAVTGIRNLKNRRNRENWQIKVCKRIAEEHNFPNTEIIDMYLCGNHGN 76
Query: 368 FTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLC 427
+ D P+I W P LVDFL HQ WQPSYIRQ++LPMLSTI+LREMA +P ++LL
Sbjct: 77 LSENDSPAIRWNQPNVGNLVDFLGCHQHWQPSYIRQRLLPMLSTIFLREMALSPSESLLL 136
Query: 428 G-QYEFDSIRRVKIRYGH 444
QYEF SI RVKIRYG+
Sbjct: 137 ADQYEFHSILRVKIRYGY 154
>gi|195441676|ref|XP_002068629.1| GK20322 [Drosophila willistoni]
gi|194164714|gb|EDW79615.1| GK20322 [Drosophila willistoni]
Length = 722
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 158/580 (27%), Positives = 257/580 (44%), Gaps = 66/580 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+A + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWSVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDFFIHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRSTIDASTLPVAEEGI--LVERNQT 115
L + PVFV++G LKSQ R +R + +E E+ +T
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKDSGSSNKENTDKTKEKGRT 118
Query: 116 -FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA V +
Sbjct: 119 RFNHVLKQCENLLISMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYR 178
Query: 175 CIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
+T + Y + DI + + + +I M+LL G D+ +G+ GIG D
Sbjct: 179 NFSVSTQGAQAAAGGAVDIYDMRDICSRIDFGQNKIIVMALLCGCDYCPDGIGGIGKDGV 238
Query: 228 LQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPG 287
L+ + + EIL L W + ST A+ + + S CS CGH G
Sbjct: 239 LKLFNKYKDAEILQRLRN---------WRNETSTYNAL-----EIRVDDKSICSNCGHLG 284
Query: 288 TKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIAL 347
++H K C C N G C+ SL KEQ+ + + K L
Sbjct: 285 RTQSHTKSGCSVC--RTNRG---------CDESLW------KEQRLSIKAELTLRKKALL 327
Query: 348 ETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLP 407
+FPN+E++ +L E + + ++W P + + + WQ Y QK P
Sbjct: 328 SADFPNEEVIAEFLTEPD----SLPQLKLNWQQPNLVKFIKQIGHLLQWQEIYCFQKFFP 383
Query: 408 MLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPV 467
+L+ + + V L E I + + G S +KW+ + + G+ P
Sbjct: 384 ILTRWQVSQGRQGSVSVL-----EPVEILKKRTVKGIASLELKWRDSKGSFKGL---IPD 435
Query: 468 DSDLHLEEF-MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTS 526
D L EF ME+P+ G T E ++L+ + +P+ V FL+ E+ K R
Sbjct: 436 D---QLREFEMEHPK----GLEELYQTVEPLELLETTYPELVATFLKSKEKPAKKSTRKK 488
Query: 527 SLRSEESNGKLESPKSKGVQLSITEFYRSAKVQSQEKSGA 566
++ ++ K+ S K Q S+ +F + K + K+ +
Sbjct: 489 AIPGDDKPKKVSSRKKNLQQPSMEQFLQKDKENTPVKTNS 528
>gi|193643497|ref|XP_001947849.1| PREDICTED: flap endonuclease GEN-like [Acyrthosiphon pisum]
Length = 477
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 128/244 (52%), Gaps = 11/244 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W LL P A L L K +A+DLS W+ E S +LR FFRT
Sbjct: 1 MGVKN-LWSLLTPVAEKMPLWELHGKAIAIDLSGWVCDSENLNHNISQKNMYLRNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
NL GA P+FV DG P LK R I+ + P+ + I+ +R + K
Sbjct: 60 CNLLL-IGAIPIFVFDGEPPLLKYSTIEKR-----INGNKAPI-KTNIIRKRLNSLQK-- 110
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
+C LL + G+ + GEAE LCA LN G V+ +T DSD FL+GA+ V + +
Sbjct: 111 -QCELLLNIMGVTCVYGHGEAEQLCAILNKNGIVNGIVTQDSDCFLYGARVVYRNFNASG 169
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ YC+ IE L + R +IA+SLL G D+D GV GIG DTA++F+Q+ +D +L
Sbjct: 170 NGSVDVYCMGSIEKNLKIGRSKMIALSLLCGCDYDEKGVLGIGKDTAIKFLQSLDDDAVL 229
Query: 241 NILH 244
+ L
Sbjct: 230 DRLR 233
>gi|260796605|ref|XP_002593295.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
gi|229278519|gb|EEN49306.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
Length = 790
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 138/244 (56%), Gaps = 7/244 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK--KNSVPKPHLRLTFF 58
MGV + W +L P L+ L+ K +AVDLS W+ + + +K +V +PHLR FF
Sbjct: 1 MGVQ-QLWTILAPVKTHCALESLQGKTLAVDLSMWVCEA-SGVKAMTGAVTRPHLRNLFF 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
R ++ K G +FVVDG P LK Q + R + T G + ++ K
Sbjct: 59 R-VSHLTKMGVGLIFVVDGEPPELKFQTMMKRNQDRFWGSKTGQKKGLGKPKKMKRSHFK 117
Query: 119 CV-QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ +EC+ LL+ G+P +++KGEAEA CA LN E VD C+T D DAFL+GA+ V + +
Sbjct: 118 AILKECILLLDGLGIPHVQSKGEAEAFCALLNRESLVDGCLTDDGDAFLYGARTVYRNLT 177
Query: 178 PNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
+ K+P +CY +SDIE L L R L+ ++LL+G D+ GV G+G + A++ +
Sbjct: 178 LDKKDPHVDCYQMSDIEEKLLLDRNKLVGLALLLGCDYCPKGVPGVGKELAVRVMTALET 237
Query: 237 DEIL 240
++L
Sbjct: 238 CDVL 241
>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
Length = 334
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 138/247 (55%), Gaps = 11/247 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV W +L+P L+ L+ + +AVDLS WI + A+ + KPHLR F+R
Sbjct: 1 MGVK-TLWVVLEPVKDPTPLEDLKGQTIAVDLSSWICESIAAV---NAFKPHLRNLFYRV 56
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
+NL ++ PVFV+DG P LKS + R + + + G+ +T LK +
Sbjct: 57 VNL-SRLNIQPVFVIDGDPPELKSNELVKRAHIQGDSKNKHGEKKPGM----QRTRLKTL 111
Query: 121 Q-ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
Q EC +LL++ G+P ++A GEAEA+CA LN EG VD T D DAFL+GAK V K +
Sbjct: 112 QYECCKLLDVLGVPYIQATGEAEAMCALLNKEGLVDGVFTEDGDAFLYGAKKVYKNLTAG 171
Query: 180 TK-EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ + Y + DIE L L R LIAM+LL+G D+ +GV +G A Q + + + +
Sbjct: 172 SNGSHVDVYDMLDIEEKLTLNRNKLIAMALLMGCDYLSDGVPSVGKTNATQLMHSLGDID 231
Query: 239 ILNILHK 245
+L H+
Sbjct: 232 VLERFHE 238
>gi|357608737|gb|EHJ66129.1| hypothetical protein KGM_15891 [Danaus plexippus]
Length = 722
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 150/541 (27%), Positives = 236/541 (43%), Gaps = 84/541 (15%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ G W +L PY+ L + + VA+DL+ W+ + PK +LR FFRT
Sbjct: 1 MGIKG-LWTVLAPYSEKISLHEISGQTVAIDLAGWVCDSQNVTDYYIQPKLYLRNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLAR----FYRSTIDASTLPVAEEGILVERNQTF 116
+ L P+FV++G LK AR F + A+T + I R +
Sbjct: 60 LYLVLS-DVNPIFVLEGDAPELKRDVMAARNALQFKGAAPKATTEKTKQTNITRTRFKGV 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
LK EC LL G+ +K +GEAEA CA+LN+EG VDA ++ DSD F +GAK V +
Sbjct: 119 LK---ECENLLRTMGVRCVKGRGEAEAACARLNAEGLVDAVVSQDSDCFAYGAKKVYRNF 175
Query: 177 RPN-------TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+ T + Y + G R ++A++LL G+D+ + GV G T +
Sbjct: 176 SVSSAGGGGATHGSVDVYDAVKMFNNKGFGRNKMVALALLCGSDYGV-GVCGSSKTTVVS 234
Query: 230 FVQNFSEDEILN-ILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGT 288
F+ ED++++ +L + + PQ++ EA S S+P C CGH G
Sbjct: 235 FLHTVPEDQVISRLLSWVSD---PQHY-------EAQSRW-VSVP----GRCDRCGHAG- 278
Query: 289 KRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALE 348
R H K C C ++GC G K LC+ R+ + K + I
Sbjct: 279 -RTHLKKGCSTCA--THQGC--NDTGHKSK--LCDVKRELLLRNKALSSGIP-------- 323
Query: 349 TNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPM 408
FP +++ +L N T D ++ P V + Y W Y +K LP+
Sbjct: 324 --FPEPKVMKEFL---NSTPEDIDLDTLKIPKPSLIQFVKIMSYKLDWPQRYCVEKFLPL 378
Query: 409 LSTIYLRE-MATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPV 467
L+ +L++ +A+ ++ L IR+ + G SY V W
Sbjct: 379 LTKWHLQDNVASRTLRPL--------EIRKKRHPKGVPSYEVVWG--------------- 415
Query: 468 DSDLHLEEFMEYPQIHVDGDC---WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKR 524
D D H E + Q+ D D W +T E L+ +P V+ + +E+ ++ K K+
Sbjct: 416 DIDGHYEGLIPDEQLEEDEDVSAPW--VTIERQDLMFKYYPGIVEKY-EESIKKPPKEKK 472
Query: 525 T 525
T
Sbjct: 473 T 473
>gi|157134745|ref|XP_001656421.1| hypothetical protein AaeL_AAEL000425 [Aedes aegypti]
gi|108884298|gb|EAT48523.1| AAEL000425-PA [Aedes aegypti]
Length = 744
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 137/531 (25%), Positives = 225/531 (42%), Gaps = 68/531 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ W+LL P++ + L L + VA+DLS W+ + + P+ +LR FFRT
Sbjct: 1 MGIK-DLWNLLTPHSEKKSLFHLNGQVVAIDLSGWVCESLNVVDYFVHPRFYLRNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRSTIDASTLPVAEEGILVERNQT-- 115
L + G PVFV++G+ PLK + R +R T + G + N T
Sbjct: 60 YYLL-QIGIIPVFVLEGSAPPLKYGVIIKRNQTQFRGVPPRKTANCDKAGGTQKPNGTES 118
Query: 116 ----------FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
F +++C ELL G+ ++A GEAEALCA LN +G V I+ DSD F
Sbjct: 119 KAPSEQKRNRFHHVLKQCEELLSSMGLVCVQAPGEAEALCAYLNHDGMVYGVISQDSDCF 178
Query: 166 LFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
+GA V + C + + Y + I + L ++ ++AM +L G D+ GV G+G
Sbjct: 179 AYGAVRVFRNFCASQSGGGSVDVYDMDKIRMVMDLGQEKIVAMGILSGCDYSPAGVPGVG 238
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDI--KSTEEAVSHSDESMPMIKSSHCS 281
+ + +LNI H + W + TE+ + D+++ C+
Sbjct: 239 REMI---------NRLLNIYHSRDVLARIRSWRATADRLTEQEIKAEDKNV-------CA 282
Query: 282 FCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKV 341
CGH G H + C+ C K C + K Q+ + + +
Sbjct: 283 DCGHQGKTFVHRRAGCQDCRT-------------KVGCD----ESRWKNQRANIKTELDI 325
Query: 342 CSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYI 401
K + +FP + IV+ ++ E D + W P + + W Y
Sbjct: 326 KRKALQDPDFPPEAIVSEFM-ERKCELPPLD---LEWRQPNIVKFIRNIANLLQWNEIYS 381
Query: 402 RQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGV 461
K+ P+ + L + NP + + + E D I++ + G S+ + WK S SG+
Sbjct: 382 FIKLFPLFTRWQLLTLRRNPSRGISV-KLEPDYIKKKRSPKGVASFEIIWKDDGSIFSGL 440
Query: 462 KYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFL 512
D L+ F++ P + + W T E LV A+P V+ FL
Sbjct: 441 V------PDDQLQAFLDEPG-NTEESLWS--TIEPQDLVSEAYPSLVEAFL 482
>gi|347968324|ref|XP_312255.5| AGAP002669-PA [Anopheles gambiae str. PEST]
gi|333468059|gb|EAA08023.5| AGAP002669-PA [Anopheles gambiae str. PEST]
Length = 733
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 149/566 (26%), Positives = 249/566 (43%), Gaps = 79/566 (13%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPL 82
L +K VA+DLS W+ + + P+ +LR FFRT L + G PVFV++GT PL
Sbjct: 9 LSNKVVAIDLSGWVCESLNVVDYFVHPRFYLRNLFFRTCYLL-QTGITPVFVLEGTAPPL 67
Query: 83 K---------------SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELL 127
K ++A ++T+ ++ ++ F +++C ELL
Sbjct: 68 KYGVIVKRNQMQFRGARPKKIANCDKATVSSTQTTEKPAKPTEQKRNRFHHVLKQCEELL 127
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFE 185
G+ ++A GEAEALCA LN + + I+ DSD F +GA V + C N E
Sbjct: 128 SAMGLVCVQAPGEAEALCAYLNRDNLIYGVISQDSDCFAYGAVRVFRNFCASQNGGS-VE 186
Query: 186 CYCISDIEAG-LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILH 244
Y ++ + A L L ++ ++AM+LL G D+ GV G+G + +F+ + EIL +
Sbjct: 187 IYDLTRVNASVLQLGQEKIVAMALLSGCDYCPAGVMGVGRELVTRFISCYENGEILPKIR 246
Query: 245 KIGNGDIPQYWGDI--KSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCIN 302
W + TE + D+++ CS CGH G + H + C
Sbjct: 247 S---------WRKTADRLTELEIRAEDKNI-------CSECGHVGKQLQHRRAGC----- 285
Query: 303 DNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYL- 361
C KP CN+ R K+Q+ + +++ K + FP++ I+ +L
Sbjct: 286 ---LDCRMKPG--------CNETRW-KQQRCNIRTELEIKRKALKDPEFPHEPIIEEFLT 333
Query: 362 --CENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS--TIYLREM 417
CE A D +SW P + + + W Y QK+LP+ + +Y +E
Sbjct: 334 RPCE----LPALD---LSWRQPNLVKFIRSMSTYLQWNELYCFQKLLPLFTRWQVYAKEH 386
Query: 418 ATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFM 477
+ ++ E D I++ + G SY + WK A + +G+ +DS +L E
Sbjct: 387 PSCKRSSIF---LEPDHIKKQRTPKGIASYEIVWKDAHNMFTGLIPQEQIDS--YLAEAG 441
Query: 478 EYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKL 537
+ W T E LV +A+P+ VD F + + K+ T + +E+ K
Sbjct: 442 NTLE-----SLWS--TIEPHDLVQTAYPELVDAFHASKSKGKKKKASTKASVNEDKPKKK 494
Query: 538 ESPKSKGVQLSITEFYRSAKVQSQEK 563
K Q+ + EF A Q+Q++
Sbjct: 495 VRTKKDKGQIPLKEFLAKANSQTQKE 520
>gi|449283697|gb|EMC90302.1| Flap endonuclease GEN like protein 1, partial [Columba livia]
Length = 542
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/464 (25%), Positives = 200/464 (43%), Gaps = 60/464 (12%)
Query: 72 VFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFG 131
VFV++G LK+ R + + A G F ++EC+ELLE G
Sbjct: 6 VFVMEGEAPKLKADTMSKRNEMRYGPSKKVGAARTG-----RSLFKAMLKECLELLECLG 60
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF-ECYCIS 190
+P ++A GEAEA+CA LN++G+VD CIT D D FL+GA V + N K+P+ +CY +S
Sbjct: 61 VPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAHTVYRNFAMNAKDPYLDCYTMS 120
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGD 250
I+ LG R+ LI +++L+G D+ GV G+G + AL+ + +L +
Sbjct: 121 SIKETLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIDTLQGQNLLQRFEQ----- 175
Query: 251 IPQYWGDIKSTEEAVSHSDESMPMI--KSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGC 308
W +E + + D + P++ + HCS C HPG+ + H C++C ++ + C
Sbjct: 176 ----W------KEQLQY-DNNPPLVVKRVIHCSECQHPGSYKEHEHSGCKFC--ESTKYC 222
Query: 309 LKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTF 368
F C C R ++ +N K S FP E++ +L N
Sbjct: 223 KPSDSKFCCPCEWHQLERAKQASAVEDNIRKKANSC----EGFPFSEVIQEFLVNKNKLI 278
Query: 369 TATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCG 428
+ P F W Y +K+L +L+ + + + + +
Sbjct: 279 KIKE-----CQRPNLLSFQIFASEKMEWPKHYASKKLLVLLTHYDMIQRKSGYIDS---K 330
Query: 429 QYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDC 488
Q + I + +I+ G + ++W+K Y D + L
Sbjct: 331 QLQAIRIVKTRIKNGIPCFEIEWQKPE------HYVDAEDEPVEL--------------- 369
Query: 489 WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
F++T E L +A+P V +L E K+++ R +E
Sbjct: 370 -FVVTVEEESLFQAAYPDVVARYLMEKSEVLKKKQKNRKDRPKE 412
>gi|444731649|gb|ELW71998.1| Flap endonuclease GEN like protein 1 [Tupaia chinensis]
Length = 793
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 9/216 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIDLHNLVGKSIAVDLSLWVCEAQTVKKMIGTVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ R + + G R+Q F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGKTWSQKRG----RSQ-FKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+++LE G+P ++A GEAEA+CA LN+ GYVD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLDMLECLGIPWVQAAGEAEAMCAYLNACGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
TK+P +CY +S I+ LGL R L+ +++L+G D+
Sbjct: 174 TKDPHVDCYTMSCIKDKLGLDRDALVGLAILLGCDY 209
>gi|195167797|ref|XP_002024719.1| GL22468 [Drosophila persimilis]
gi|194108124|gb|EDW30167.1| GL22468 [Drosophila persimilis]
Length = 754
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 144/549 (26%), Positives = 243/549 (44%), Gaps = 65/549 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+A + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRSTIDASTLPVAEEGILVERNQT-F 116
L + PVFV++G LK Q R +R + V++ +T F
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKGQVITKRNELQFRGVRPKDAATGTQTAAKVDKGRTRF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+++C LL G+ ++ GEAEA A LN G VD I+ DSD F +GA V +
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 177 RPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+T + Y + +I + + + +I M+LL G D+ +G+ GIG D L+
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLK 238
Query: 230 FVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTK 289
+ E EIL+ L W E ++ M + S CS CGH G
Sbjct: 239 LFNKYKESEILDRLRN---------W-----RAETDKYNALEMRVDDKSICSNCGHIGRT 284
Query: 290 RAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET 349
++H K C C C+ +L KEQ+ + + K L
Sbjct: 285 QSHTKSGCSVCRTKRG-----------CDETLW------KEQRLSIKAELILRRKALLAP 327
Query: 350 NFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPML 409
FPN+EI++ +L E ++ W P + + + W Y QK P+L
Sbjct: 328 EFPNEEIISEFLSEP----PTIPNLNLGWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPIL 383
Query: 410 STIYLREMA-TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVD 468
+ +++ A TN ++ L Q D I++ ++ G S ++W+ + + G+
Sbjct: 384 TRWQVQQAARTNAIERLELVQ-PVDIIKKRTVK-GVASLELRWQDPSGSFQGLI------ 435
Query: 469 SDLHLEEF-MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENE---RRELKRKR 524
D + EF +E+P+ G T E + ++ +A+P V FL+ E ++ ++K+
Sbjct: 436 PDKQISEFELEHPK----GIEELYYTVEPLDMLEAAYPDLVASFLKSKEKPPKKATRKKK 491
Query: 525 TSSLRSEES 533
T L + E+
Sbjct: 492 TDPLSAIEN 500
>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 724
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/533 (25%), Positives = 222/533 (41%), Gaps = 71/533 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ W+LL PY + L L K VA+DLS W+ + + P+ +LR FFRT
Sbjct: 1 MGIK-DLWNLLTPYCEKKPLFELNRKVVAIDLSGWVCESLNVVDYFVHPRFYLRNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKS---------QARLARFYRST------IDASTLPVAE 105
L G PVFV++G PLK Q R AR ++ E
Sbjct: 60 CYLLTT-GIVPVFVLEGAAPPLKYGVIIQRNQIQFRGARPKKAADCDKEATGGDKRKQDE 118
Query: 106 EGILV--ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
G ++ F +++C ELL G+ ++A GEAEALCA LN E V I+ DSD
Sbjct: 119 PGKRAPEQKRNRFHHVLKQCEELLSSMGLVCVQAPGEAEALCAHLNRENLVHGIISQDSD 178
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F +G V + C N E Y + +I + L ++ ++ M +L G D+ GV G
Sbjct: 179 CFAYGGVRVYRNFCASQNGGS-VEIYDLENIRRVMDLGQEKIVVMGILSGCDYSPAGVPG 237
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDI--KSTEEAVSHSDESMPMIKSSH 279
+G + + ++++ EIL+ + + W + TE + D+++
Sbjct: 238 VGRELVHRLIRSYPSWEILDRI---------RAWRKTADRLTELEIKAEDKNV------- 281
Query: 280 CSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWI 339
C+ CGH G H + C C GC + K Q+ + +
Sbjct: 282 CADCGHGGKTFVHRRSGCADC--RTKAGC---------------DESRWKNQRANIKAEL 324
Query: 340 KVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPS 399
+ K + FP++ I+ ++ T ++W P + + W
Sbjct: 325 DIKRKALQDPEFPSEAIIDEFMVRPYELPTL----DLTWRQPNFVKFIRSMAALLQWNEI 380
Query: 400 YIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAIS 459
Y QK+LP+ + + ++ P Q L E I++ + G SY + WK AS +
Sbjct: 381 YCFQKLLPLFTRWQIVTLSHCPSQRLSIA-LEPSYIKKKRSPKGVASYEIVWKDNASIFA 439
Query: 460 GVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFL 512
G+ D ++EFM ++ T E +LV SA+ + V+ FL
Sbjct: 440 GLV------PDEQIQEFMAEAGNSLET---LWSTIEPQQLVESAYSELVEAFL 483
>gi|125980514|ref|XP_001354281.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
gi|121993075|sp|Q29FC1.1|GEN_DROPS RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease
gi|54642587|gb|EAL31334.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
Length = 754
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 242/549 (44%), Gaps = 65/549 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+A + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRSTIDASTLPVAEEGILVERNQT-F 116
L + PVFV++G LK Q R +R + V++ +T F
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAKVDKGRTRF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+++C LL G+ ++ GEAEA A LN G VD I+ DSD F +GA V +
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 177 RPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+T + Y + +I + + + +I M+LL G D+ +G+ GIG D L+
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLK 238
Query: 230 FVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTK 289
+ E EIL+ L W E ++ M + S CS CGH G
Sbjct: 239 LFNKYKESEILDRLRN---------W-----RAETDKYNALEMRVDDKSICSNCGHIGRT 284
Query: 290 RAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET 349
++H K C C C+ +L KEQ+ + + K L
Sbjct: 285 QSHTKSGCSVCRTKRG-----------CDKTLW------KEQRLSIKAELILRRKALLAP 327
Query: 350 NFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPML 409
FPN+EI++ +L E ++ W P + + + W Y QK P+L
Sbjct: 328 EFPNEEIISEFLSEP----PTIPNLNLGWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPIL 383
Query: 410 STIYLREMA-TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVD 468
+ +++ A TN + + Q D I++ ++ G S ++W+ + + G+
Sbjct: 384 TRWQVQQAARTNAIGRVELVQ-PVDIIKKRTVK-GVASLELRWQDPSGSFQGLI------ 435
Query: 469 SDLHLEEF-MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENE---RRELKRKR 524
D + EF +E+P+ G T E + ++ +A+P V FL+ E ++ ++K+
Sbjct: 436 PDKQISEFELEHPK----GIEELYYTVEPLDMLEAAYPDLVASFLKSKEKPPKKATRKKK 491
Query: 525 TSSLRSEES 533
T L + E+
Sbjct: 492 TDPLSAIEN 500
>gi|194750279|ref|XP_001957555.1| GF10471 [Drosophila ananassae]
gi|190624837|gb|EDV40361.1| GF10471 [Drosophila ananassae]
Length = 734
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 143/547 (26%), Positives = 235/547 (42%), Gaps = 78/547 (14%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + + LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWTVLTPHCERKPISELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDAST---LPVAEEGI 108
L + PVFV++G LKSQ R + +T + T P AE+G
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKEATAGSQTQSQAPKAEKG- 117
Query: 109 LVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +G
Sbjct: 118 ----RTRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYG 173
Query: 169 AKCVVKCIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
A V + +T + Y + +I + + +I M+LL G D+ +G+ G
Sbjct: 174 AVRVYRNFSVSTQGAQAAAGGAVDIYDMREITTRMDFGQHKIIVMALLCGCDYCPDGIGG 233
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCS 281
IG D L+ + E EIL+ L W +E ++ + + S CS
Sbjct: 234 IGRDGVLKLFNKYKETEILDKLRN---------W-----RQETNKYNALEIRVDDKSICS 279
Query: 282 FCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKV 341
CGH G ++H K C C C+ SL KEQ+ + +
Sbjct: 280 NCGHIGKTQSHTKSGCSVCRTHKG-----------CDESLW------KEQRLSIKAELAL 322
Query: 342 CSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYI 401
K +++ FPN+EI+ +L E + +++W P + + + W Y
Sbjct: 323 RRKALVDSTFPNEEIIAEFLSEP----STIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYC 378
Query: 402 RQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGV 461
QK P+L+ +++ + +L E R VK G S ++W + + G+
Sbjct: 379 FQKFFPILTRWQVQQSKQ---EKILIEPLEIIKKRTVK---GVPSLELRWHDPSGSFKGL 432
Query: 462 KYTAPVDSDLHLEEF-MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERREL 520
D + EF +E+P+ G T E ++++ A+P+ V FL+ E+
Sbjct: 433 I------PDDQISEFELEHPK----GIEELYFTIEPLEMLEQAYPELVSAFLKSKEKPAK 482
Query: 521 KRKRTSS 527
K R +
Sbjct: 483 KTTRKKA 489
>gi|195014132|ref|XP_001983964.1| GH15274 [Drosophila grimshawi]
gi|193897446|gb|EDV96312.1| GH15274 [Drosophila grimshawi]
Length = 749
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 142/534 (26%), Positives = 233/534 (43%), Gaps = 70/534 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+A + + LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWTILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDASTLPVAEEGILVE 111
L + PVFV++G LKSQ R R DA P + + +
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVRPKDKDKDAQA-PPKQAALNGD 117
Query: 112 RNQT-FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
+ +T F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA+
Sbjct: 118 KGRTRFNNVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKYGLVDGVISQDSDCFAYGAR 177
Query: 171 CVVKCIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
V + +T + Y + +I + ++ +I M+LL G D+ +G+ GIG
Sbjct: 178 RVYRNFSVSTQGAQAAAGGAVDIYDMQEICTRIDFGQQKVIVMALLCGCDYCPDGIGGIG 237
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFC 283
D L+ + E EIL+ L + W E +S + + S CS C
Sbjct: 238 KDGVLKLFNMYKESEILDRL---------RTW-----RAETDKYSVLELRVDDKSICSNC 283
Query: 284 GHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCS 343
GH G ++H K C C C+ SL KEQ+ + +
Sbjct: 284 GHIGRTQSHTKSGCGVCRTHRG-----------CDESLW------KEQRLSIKAELTLRK 326
Query: 344 KIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQ 403
K ++ NFPN+E+++ +L E + + W P + + + W Y Q
Sbjct: 327 KALVDANFPNEEVISEFLTEP----ASLPNLQLDWRQPNIVKFIKQIGHLLQWPEIYCFQ 382
Query: 404 KMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKY 463
K P+L+ +++ +N +L+ Q E R VK G S ++W+ + G+
Sbjct: 383 KFFPILTRWQVQQ--SNQDMSLVQPQ-EIIKKRTVK---GVASLELRWEDSRGCFKGL-- 434
Query: 464 TAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENER 517
L ++ E+ H G T E + ++ +A+P V FL+ E+
Sbjct: 435 -------LPQDQIAEFELEHPKGVEELYYTIEPLDMLQAAYPDLVAAFLKSKEK 481
>gi|195376315|ref|XP_002046942.1| GJ12207 [Drosophila virilis]
gi|194154100|gb|EDW69284.1| GJ12207 [Drosophila virilis]
Length = 747
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 152/586 (25%), Positives = 239/586 (40%), Gaps = 78/586 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+A + + LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWSILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLAR------FYRSTIDASTLPVAEEGILVERNQ 114
L + PVFV++G LKSQ R R + P +
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVRPKDKDAPAPTQAAAKKDKGRT 118
Query: 115 TFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA V +
Sbjct: 119 RFNHVLKQCENLLLAMGIQCVQGPGEAEAYCAYLNKHGLVDGVISQDSDCFAYGAVRVYR 178
Query: 175 CIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
+T + Y + I A + + +I M+LL G D+ +G+ GIG D
Sbjct: 179 NFSVSTQGAQAAAGGAVDIYDMQTICAHMDFGQNKVIVMALLCGCDYCPDGIGGIGKDGV 238
Query: 228 LQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPG 287
L+ + E EIL+ L W E +S + + S CS CGH G
Sbjct: 239 LKLFNKYKESEILDRLRN---------W-----RSETDKYSALELRVDDKSICSNCGHIG 284
Query: 288 TKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIAL 347
++H K C C C+ SL KEQ+ + + K +
Sbjct: 285 RTQSHTKSGCGVCRTHRG-----------CDESLW------KEQRLSIKAELTLRKKALV 327
Query: 348 ETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLP 407
+ +FPN+EI++ +L E + W P + + + W Y QK P
Sbjct: 328 DVDFPNEEIISEFLTEP----PTLPNLKLDWRQPNIVKFIKQIGHLLQWPEIYCFQKFFP 383
Query: 408 MLSTIYLREMATNPVQTL-LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP 466
+L+ R P Q + L E R VK G S ++W + +G+
Sbjct: 384 ILT----RWQVQQPNQDMCLVQPQEIIKKRTVK---GVASLELRWADSRGCFNGL----- 431
Query: 467 VDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELK---RK 523
L ++ E+ H G T E + ++ +A+P V FL+ E+ K RK
Sbjct: 432 ----LPHDQIAEFELEHPKGVEELYYTIEPLDMLQAAYPNLVAAFLKSKEKPPKKTAMRK 487
Query: 524 RTSSLRSEESNGKLES--------PKSKGVQLSITEFYRSAKVQSQ 561
+ + L + E+ L + PK + +++ I K Q
Sbjct: 488 KKTPLCALENLSDLAAATDEIISKPKRRKMKMPIEPVDHGQKTMKQ 533
>gi|24658219|ref|NP_647943.2| XPG-like endonuclease [Drosophila melanogaster]
gi|74870583|sp|Q9VRJ0.1|GEN_DROME RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease; Short=DmGEN
gi|7295491|gb|AAF50805.1| XPG-like endonuclease [Drosophila melanogaster]
gi|21711755|gb|AAM75068.1| RE33588p [Drosophila melanogaster]
gi|220949066|gb|ACL87076.1| Gen-PA [synthetic construct]
Length = 726
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 134/530 (25%), Positives = 231/530 (43%), Gaps = 66/530 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQ--ARLARFYRSTIDASTLPVAEEGILVERNQ---T 115
L + PVFV++G LKSQ A+ + P + + ++
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGDKGRSR 118
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA V +
Sbjct: 119 FNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRN 178
Query: 176 IRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+T + Y + +I + + ++ +I M+LL G D+ +G+ GIG D L
Sbjct: 179 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVL 238
Query: 229 QFVQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGHPG 287
+ + E EIL+ + + G+ +Y +I+ ++++ CS CGH G
Sbjct: 239 KLFNKYKETEILDRM-RSWRGETDKYNALEIRVDDKSI--------------CSNCGHIG 283
Query: 288 TKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIAL 347
++H K C C C+ SL KEQ+ + + K L
Sbjct: 284 KTQSHTKSGCSVCRTHKG-----------CDESLW------KEQRLSIKSELTLRRKALL 326
Query: 348 ETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLP 407
+FPN+EI+ +L E + +++W P + + + W Y QK P
Sbjct: 327 SPDFPNEEIIAEFLSEPD----TIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFP 382
Query: 408 MLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPV 467
+L+ +++ + +L +E R VK G S ++W + G+
Sbjct: 383 ILTRWQVQQSKQ---EKILIQPHEIIKKRTVK---GVPSLELRWHDPSGIFKGL------ 430
Query: 468 DSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENER 517
+ ++ EY H G T E + ++ +A+P V FL+ E+
Sbjct: 431 ---IPDKQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEK 477
>gi|195491935|ref|XP_002093778.1| GE20569 [Drosophila yakuba]
gi|194179879|gb|EDW93490.1| GE20569 [Drosophila yakuba]
Length = 727
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 138/533 (25%), Positives = 224/533 (42%), Gaps = 74/533 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRST-------IDASTLPVAEEGILV 110
L + PVFV++G LKSQ R +R S P ++G
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQAPKGDKG--- 115
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA
Sbjct: 116 --RSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAI 173
Query: 171 CVVKCIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
V + +T + Y + +I + + ++ +I M+LL G D+ +G+ GIG
Sbjct: 174 RVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIG 233
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFC 283
D L+ + E EIL+ + W E ++ M + S CS C
Sbjct: 234 KDGVLKLFNKYKETEILDRMRS---------WRG-----ETDKYNALEMRVDDKSICSNC 279
Query: 284 GHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCS 343
GH G ++H K C C C+ SL KEQ+ + +
Sbjct: 280 GHIGKTQSHTKSGCSVCRTHRG-----------CDESLW------KEQRLSIKAELTLRR 322
Query: 344 KIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQ 403
K L +FPN+EI+ +L E + +++W P + + + W Y Q
Sbjct: 323 KALLSADFPNEEIIAEFLSEPD----TIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCFQ 378
Query: 404 KMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKY 463
K P+L+ +++ + +L E R VK G S ++W + G+
Sbjct: 379 KFFPILTRWQVQQSKQ---EKILIQPLEIIKKRTVK---GVPSLELRWHDPSGIFKGL-- 430
Query: 464 TAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENE 516
+ ++ EY H G T E + ++ +A+P V FL+ E
Sbjct: 431 -------IPDKQIAEYETEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKE 476
>gi|195337621|ref|XP_002035427.1| GM13928 [Drosophila sechellia]
gi|194128520|gb|EDW50563.1| GM13928 [Drosophila sechellia]
Length = 726
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 139/534 (26%), Positives = 229/534 (42%), Gaps = 76/534 (14%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRST-------IDASTLPVAEEGILV 110
L + PVFV++G LK Q R +R S P A++G
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKGQVIAKRNELQFRGVKPKNSPECTQSQAPKADKG--- 115
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA
Sbjct: 116 --RSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAV 173
Query: 171 CVVKCIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
V + +T + Y + +I + + ++ +I M+LL G D+ +G+ GIG
Sbjct: 174 RVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIG 233
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSF 282
D L+ + E EIL+ + + G+ +Y +I+ ++++ CS
Sbjct: 234 KDGVLKLFNKYKETEILDRM-RSWRGETDKYNALEIRVDDKSI--------------CSN 278
Query: 283 CGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVC 342
CGH G ++H K C C C+ SL KEQ+ + +
Sbjct: 279 CGHIGKTQSHTKSGCSVCRTHKG-----------CDESLW------KEQRLSIKAELTLR 321
Query: 343 SKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIR 402
K L +FPN+EI+ +L E GT + ++W P + + + W Y
Sbjct: 322 RKALLSPDFPNEEIIAEFLSE-PGTIPNLN---LNWRQPNLVKFIKQIGHLLQWPEIYCF 377
Query: 403 QKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK 462
QK P+L+ +++ + +L E R VK G S ++W + G+
Sbjct: 378 QKFFPILTRWQVQQSKQ---EKILIQPLEIIKKRTVK---GVPSLELRWHDTSDIFKGL- 430
Query: 463 YTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENE 516
+ + EY H G T E + ++ +A+P V FL+ E
Sbjct: 431 --------IPDNQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKE 476
>gi|195587930|ref|XP_002083714.1| GD13208 [Drosophila simulans]
gi|194195723|gb|EDX09299.1| GD13208 [Drosophila simulans]
Length = 726
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 137/534 (25%), Positives = 228/534 (42%), Gaps = 76/534 (14%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRST-------IDASTLPVAEEGILV 110
L + PVFV++G LKSQ R +R S P ++G
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQAPKGDKG--- 115
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA
Sbjct: 116 --RSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAV 173
Query: 171 CVVKCIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
V + +T + Y + +I + + ++ +I M+LL G D+ +G+ GIG
Sbjct: 174 RVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIG 233
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSF 282
D L+ + E EIL+ + + G+ +Y +I+ ++++ CS
Sbjct: 234 KDGVLKLFNKYKETEILDRM-RSWRGETTKYNALEIRVDDKSI--------------CSN 278
Query: 283 CGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVC 342
CGH G ++H K C C C+ SL KEQ+ + +
Sbjct: 279 CGHIGKTQSHTKSGCSVCRTHKG-----------CDESLW------KEQRLSIKAELTLR 321
Query: 343 SKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIR 402
K L +FPN+EI+ +L E + +++W P + + + W Y
Sbjct: 322 RKALLSPDFPNEEIIAEFLSEPD----TIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCF 377
Query: 403 QKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK 462
QK P+L+ +++ + +L E R VK G S ++W + G+
Sbjct: 378 QKFFPILTRWQVQQSKQ---EKILIQPLEIIKKRTVK---GVPSLELRWHDPSGIFKGL- 430
Query: 463 YTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENE 516
+ + EY H G T E + ++ +A+P V FL+ E
Sbjct: 431 --------IPDNQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKE 476
>gi|5679043|gb|AAD46833.1|AF160893_1 GM10765p [Drosophila melanogaster]
gi|28460669|dbj|BAC57447.1| xpg like endonuclease [Drosophila melanogaster]
Length = 726
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 134/530 (25%), Positives = 230/530 (43%), Gaps = 66/530 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQ--ARLARFYRSTIDASTLPVAEEGILVERNQ---T 115
L + PVFV++G LKSQ A+ + P + + ++
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGDKGRSR 118
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA V +
Sbjct: 119 FNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRN 178
Query: 176 IRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+T + Y + +I + + ++ +I M+LL G D+ +G+ GIG D L
Sbjct: 179 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVL 238
Query: 229 QFVQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGHPG 287
+ + E EIL+ + + G+ +Y +I+ ++++ CS CGH G
Sbjct: 239 KLFNKYKETEILDRM-RSWRGETDKYNALEIRVDDKSI--------------CSNCGHIG 283
Query: 288 TKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIAL 347
++H K C C C+ SL KEQ+ + + K L
Sbjct: 284 KTQSHTKSGCSVCRTHKG-----------CDESLW------KEQRLSIKSELTLRRKALL 326
Query: 348 ETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLP 407
+FPN+EI+ +L E + +++W P + + + W Y QK P
Sbjct: 327 SPDFPNEEIIAEFLSEPD----TIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFP 382
Query: 408 MLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPV 467
+L+ +++ + +L E R VK G S ++W + G+
Sbjct: 383 ILTRWQVQQSKQ---EKILIQPLEIIKKRTVK---GVPSLELRWHDPSGIFKGL------ 430
Query: 468 DSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENER 517
+ ++ EY H G T E + ++ +A+P V FL+ E+
Sbjct: 431 ---IPDKQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEK 477
>gi|312375261|gb|EFR22667.1| hypothetical protein AND_14372 [Anopheles darlingi]
Length = 738
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 137/553 (24%), Positives = 237/553 (42%), Gaps = 89/553 (16%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT----FFRTINLFAKFGAFPVFVVDGT 78
L +K VA+DLS W+ + + P+ +LR FFRT L + G PVFV++G
Sbjct: 9 LSNKVVAIDLSGWVCESLNVVDYFVHPRFYLRYVVKNLFFRTCYLL-QTGITPVFVLEGA 67
Query: 79 PSPLK---------------SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQEC 123
PLK ++A ++ A+ + A ++ F +++C
Sbjct: 68 APPLKYGVIVKRNQLQFRGARPKKVANCDKAGATATAVEKASSKPTEQKRNRFHHVLKQC 127
Query: 124 VELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTK 181
ELL G+ ++A GEAEALCA LN + +D I+ DSD F +GA V + C N
Sbjct: 128 EELLSAMGLVCVQAPGEAEALCAYLNRDALIDGVISQDSDCFAYGAVRVFRNFCASQNGG 187
Query: 182 EPFECYCISDIE----AGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
+ D+E AGL L ++ ++AM+LL G D+ GV G+G + + + + +
Sbjct: 188 S----VDVYDLERANSAGLRLGQEKIVAMALLSGCDYCPAGVAGVGREMVTRLLNCYDNE 243
Query: 238 EILNILHKIGNGDIPQYWGDI--KSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKF 295
IL + W + + TE V D+++ C CGH G H K
Sbjct: 244 TILQRIRS---------WRNTAHRLTELEVKVDDKNV-------CPDCGHIGKLMQHRKA 287
Query: 296 SCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDE 355
C C+ S+ + K+Q+ + +++ K + +FP++
Sbjct: 288 GC-----------------LDCHRSIGCDESRWKQQRANVKAELEIKRKALKDPDFPHEP 330
Query: 356 IVTMYL---CENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS-- 410
I+ ++ CE A D + W P + + + W Y QK+LP+ +
Sbjct: 331 IIEEFMTRPCE----LPALD---LQWKQPNLVKFIRSMSSYLQWNELYCFQKLLPLFTRW 383
Query: 411 TIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSD 470
I + +++P Q+ + D I++ + G SY + WK A + G+ +D+
Sbjct: 384 QIQSAQNSSSPTQSNIF--LTPDYIKKKRSPKGIASYEIVWKDALALFKGLIPQEQIDA- 440
Query: 471 LHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRS 530
++ ++ W T E +LV +A+P VD FLQ + + K+ + +
Sbjct: 441 -----YVGEAGNSIES-LWS--TIEPHELVLNAYPDLVDKFLQSKVKGKRKKAPSKTTSQ 492
Query: 531 EESNGKLESPKSK 543
+ G + PK K
Sbjct: 493 PQETGS-DKPKRK 504
>gi|194866945|ref|XP_001971974.1| GG14140 [Drosophila erecta]
gi|190653757|gb|EDV51000.1| GG14140 [Drosophila erecta]
Length = 726
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 138/534 (25%), Positives = 228/534 (42%), Gaps = 76/534 (14%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRST-------IDASTLPVAEEGILV 110
L + PVFV++G LKSQ R +R S P ++G
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECSQSQAPKGDKG--- 115
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA
Sbjct: 116 --RSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAI 173
Query: 171 CVVKCIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
V + +T + Y + +I + + ++ +I M+LL G D+ +G+ GIG
Sbjct: 174 RVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIG 233
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSF 282
D L+ + E EIL + + G+ +Y +I+ ++++ CS
Sbjct: 234 KDGVLKLFNKYKEAEILARM-RSWRGETDKYNALEIRVDDKSI--------------CSN 278
Query: 283 CGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVC 342
CGH G ++H K C C C+ SL KEQ+ + +
Sbjct: 279 CGHIGKTQSHTKSGCSVCRTHRG-----------CDESLW------KEQRLSIKAELTLR 321
Query: 343 SKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIR 402
K L +FPN+EI+ +L E + +++W P + + + W Y
Sbjct: 322 RKALLSPDFPNEEIIAEFLSEPD----TIPNLNLNWRQPNLVKFIKQVGHLLQWPEIYCF 377
Query: 403 QKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK 462
QK P+L+ +++ V L E R VK G S ++W + + G+
Sbjct: 378 QKFFPILTRWQVQQSKQEKV---LIQPVEIIKKRTVK---GVPSLELRWHDPSGILKGL- 430
Query: 463 YTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENE 516
+ ++ EY H G T E + ++ +A+P V FL+ E
Sbjct: 431 --------IPDKQIAEYEAEHPKGIEELYCTIEPLDMLQAAYPDLVAVFLKSKE 476
>gi|187608436|ref|NP_001120251.1| Gen endonuclease homolog 1 [Xenopus (Silurana) tropicalis]
gi|169641850|gb|AAI60467.1| LOC100145302 protein [Xenopus (Silurana) tropicalis]
Length = 219
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 13/218 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L P + L+ L K +AVDLS W+ + + + V KPHLR FFR
Sbjct: 1 MGVT-DLWSILGPVKKHVPLESLAGKTLAVDLSIWVCEAQMVKQMIGVVHKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLK 118
I+ G VFV +G +K++ R R AS P + +++ K
Sbjct: 60 -ISSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSASAAPP-------KAGRSYFK 111
Query: 119 CV-QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
V +EC+ +LE G+P ++A GEAEA+CA LN+ GYVD CIT D D FL+GA+ +
Sbjct: 112 SVLKECLLMLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGAQTFYRNFT 171
Query: 178 PNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
N K+P +CY +S I+A LGL R+ L+ +++L+G D+
Sbjct: 172 MNVKDPHVDCYEVSKIKAQLGLDREELVGLAILLGCDY 209
>gi|195127377|ref|XP_002008145.1| GI11983 [Drosophila mojavensis]
gi|193919754|gb|EDW18621.1| GI11983 [Drosophila mojavensis]
Length = 751
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 143/536 (26%), Positives = 228/536 (42%), Gaps = 73/536 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L PYA + + LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWSILTPYADRKPICELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDASTLPVAEEGILVE 111
L + PVFV++G LKSQ R AR D + + +
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGARPKDKDKDKDAVGPTQAVAKSD 118
Query: 112 RNQT-FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
+ +T F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA
Sbjct: 119 KGRTRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAV 178
Query: 171 CVVKCIRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
V + +T + Y + +I + + +I M+LL G D+ +G+ GIG
Sbjct: 179 RVYRNFSVSTQGAQAAAGGAVDIYDMQEICNHMDFGQNKVIVMALLCGCDYCPDGIGGIG 238
Query: 224 LDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFC 283
D L+ + E +IL+ L W E ++ + + S CS C
Sbjct: 239 KDGVLKLFNKYKESDILDRLRN---------W-----RSETDKYNALELRVDDKSICSNC 284
Query: 284 GHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCS 343
GH G ++H K C C C+ SL KEQ+ + +
Sbjct: 285 GHIGRTQSHTKSGCGVCRTHRG-----------CDESLW------KEQRLSIKAELTLRK 327
Query: 344 KIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQ 403
K L+ +FPN+EI++ +L + + W P + + + W Y Q
Sbjct: 328 KALLDVDFPNEEIISEFLTQPAKLPNLV----LDWRQPNIVKFIKQIGHLLQWPEIYCFQ 383
Query: 404 KMLPMLSTIYLREMATNPVQTL-LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVK 462
K P+L+ R P + L L E R VK G S ++W+ G+
Sbjct: 384 KFFPLLT----RWQVQQPNEALALVQPQEIIKKRTVK---GIASLELRWEDTRGCFEGL- 435
Query: 463 YTAPVDSDLHLEEF-MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENER 517
P D +EEF +++P+ G T E + ++ +A+P V F++ E+
Sbjct: 436 --IPHD---QIEEFKLDHPK----GVEELYYTVEPLDMLQAAYPDMVAAFIKSKEK 482
>gi|328857380|gb|EGG06497.1| hypothetical protein MELLADRAFT_36164 [Melampsora larici-populina
98AG31]
Length = 288
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 132/248 (53%), Gaps = 18/248 (7%)
Query: 7 FWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTFFRTINL 63
W L+ P AR L+ + +K++A+D S W+ Q + A++ + H+ L F R I+
Sbjct: 2 LWTLITPVARPIKLETMGNKKLAIDSSIWLYQFQNAMRDREGRGLTNAHI-LGFLRRISK 60
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARLARFYRSTI----------DASTLPVAEEGILVERN 113
+G PVFV DG LK Q + Y S+I DA + ++ + R+
Sbjct: 61 LLYYGIKPVFVFDGGAPVLKKQTIVEHLYFSSIFKLDDMRHQVDAEVNKLKDQRVKDRRD 120
Query: 114 --QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKC 171
L+ ++ +L LFG+P + + EAEA CA+L +G VD IT DSD FLFG
Sbjct: 121 ADDVNLQMSKDIQSMLRLFGIPYVISPMEAEAQCAELLKKGLVDGIITDDSDVFLFGGTR 180
Query: 172 VVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
V K + N + ECY ++D+E LGL R+ LI ++ L+G+D+ G+ G+G TA++ +
Sbjct: 181 VYKNM-FNQNKFVECYLMNDLEKELGLSRQRLIQLAYLLGSDYT-EGLAGVGPVTAMEIL 238
Query: 232 QNFSEDEI 239
F ++ +
Sbjct: 239 SEFDDEHL 246
>gi|358340619|dbj|GAA29362.2| flap endonuclease GEN homolog 1 [Clonorchis sinensis]
Length = 612
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 139/279 (49%), Gaps = 28/279 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI-----VQHETAIKKNSVPKPHLRL 55
MGV G W +L P L L + VAVDLS W V+H ++ K +LR
Sbjct: 1 MGVRG-LWSILAPIQEHRPLAELGGETVAVDLSIWTCGDVSVKHNMSVST----KLYLRN 55
Query: 56 TFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF--YRSTIDASTLPVAEEGILVERN 113
FFRT+NL + PV V+DG LK+ R R I+ S P +LV+R
Sbjct: 56 LFFRTLNLLRQ-NTLPVVVLDGVAPSLKATTIANRLCTQRRNIELSIDP----AVLVKRR 110
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
+ K EC LL+ G+P +++ GEAEA+CA LNS VDACIT D DAFL+GA V
Sbjct: 111 R-LSKISGECRTLLQALGVPCVQSPGEAEAMCALLNSSKRVDACITNDGDAFLYGATTVY 169
Query: 174 KCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ N+++P Y S I L L R L+ +S+++G D+ G GIG + V
Sbjct: 170 RHFTMNSRDPSVYVYRSSRIYKELSLDRFLLVFLSIVLGCDYWPTGTVGIGQAGIQRLVS 229
Query: 233 N---FSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHS 268
+ + +++ ++L+ I G + TE +HS
Sbjct: 230 SLRCLTSEKLRDLLNWIKTGR------QVSQTEVVEAHS 262
>gi|443725425|gb|ELU13028.1| hypothetical protein CAPTEDRAFT_123501, partial [Capitella teleta]
Length = 206
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 114/198 (57%), Gaps = 11/198 (5%)
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLK-------SQARLARFYRSTIDASTLPVAEE 106
R FFR I+ + G VF V+G P PLK QAR + + +S ++
Sbjct: 4 RNLFFR-ISHLTRLGVKLVFAVEGDPPPLKWEMIQKRLQARTGEGPQGSYSSSFQSNSQR 62
Query: 107 GILVERNQTFLKCVQ--ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
G++ + VQ +C ELL+L G+P +++ GEAEA+CAQLN E VDA IT D DA
Sbjct: 63 GMIALTINCLIIAVQFIQCCELLDLLGVPHVQSSGEAEAMCAQLNKEKVVDAVITNDGDA 122
Query: 165 FLFGAKCVVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
FL+GA+ V + NTK+P E YC+ +IE L L RK L+A++LL+G D+ GV G+G
Sbjct: 123 FLYGARKVYRNFTMNTKDPHVESYCMDEIEDKLSLDRKTLVALALLLGCDYAPQGVAGVG 182
Query: 224 LDTALQFVQNFSEDEILN 241
+T L+ + + +L+
Sbjct: 183 KETVLKLIAELNGTSLLD 200
>gi|256052789|ref|XP_002569934.1| xp-G/rad2 DNA repair endonuclease family member [Schistosoma
mansoni]
Length = 828
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 122/235 (51%), Gaps = 9/235 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV G W +L + L + VAVDLS WI ++ +P HLR FFR
Sbjct: 1 MGVHG-LWGILSSVQEYRPLSKIGCDSVAVDLSIWICGDKSI---TPLPALHLRNLFFRL 56
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
+ L + P+ V+DG LKS R + T +T + + R F K
Sbjct: 57 VGLLRQ-NTLPIAVLDGVAPSLKSDVMKQRQQKWTGKITTQKCTKPNLNRIR---FSKVS 112
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
QEC++LL FG+P +++ GEAEA+CA LNS VDACIT D DAFL+GA+ V + ++
Sbjct: 113 QECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYRHFSMDS 172
Query: 181 KEPFEC-YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
++ C + + I L L + L+ + +L+G D+ +GV +G AL+ + +
Sbjct: 173 RDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISSL 227
>gi|384250267|gb|EIE23747.1| hypothetical protein COCSUDRAFT_47423 [Coccomyxa subellipsoidea
C-169]
Length = 959
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 151/322 (46%), Gaps = 50/322 (15%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKKNSV----PKPHLRL---TFFRTINLFAKFGAFPVFVV 75
L K VAVD+S W Q A+ + ++ P+ R+ F R IN + +FG PV V+
Sbjct: 36 LEGKVVAVDVSLWTCQ---ALMQGALVEVFPEEEARVVKVAFDRIIN-YLRFGCTPVGVL 91
Query: 76 DGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVL 135
DG K + ARF+ S A G N F+ +L + G+ V+
Sbjct: 92 DGDAPEQKLETLQARFF------SRFNRAGGG---GGNSHFVHLCSLTAQLFKAMGLWVV 142
Query: 136 KAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFEC----YCISD 191
+A GEAEA+CA L+ G+VDAC+T DSDA LFGA+ + + I+P T P EC + D
Sbjct: 143 QAPGEAEAVCAALDRAGHVDACVTKDSDALLFGAQTLFQTIKPVTSTPNECKLSSVAMRD 202
Query: 192 IEAGLGLKRKH---LIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
+ A LG+ L A++LL G D+ + G +G+G AL V++ + + ++
Sbjct: 203 VRAYLGINEGGELALTAIALLTGGDYHMGGAEGVGQKQALAVVKHLLKGQKSDV------ 256
Query: 249 GDIPQYWGDIKSTEEAVSHSDESMPMI----KSSHCSFCGHPGTKRAHFK-----FSCEY 299
G + S E ++ E + K + C CGH G +++ K CE
Sbjct: 257 -------GVLDSLAELLAQPPEEHAEVLRHDKCTGCKRCGHEGGRKSSMKNHSTRNPCEC 309
Query: 300 CINDNNEGCLKKPDGFKCNCSL 321
C ++ C + G C C+
Sbjct: 310 CPPAHDGTCRQHVHG-SCACAF 330
>gi|307108696|gb|EFN56935.1| hypothetical protein CHLNCDRAFT_143468 [Chlorella variabilis]
Length = 930
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 124/501 (24%), Positives = 201/501 (40%), Gaps = 96/501 (19%)
Query: 28 VAVDLSYWIVQHETAIKKNSVPKPH-------LRLTFFRTINLFAKFGAFPVFVVDGTPS 80
VAVDLS W++Q + + PH +++ F R + + G PV VV+G P
Sbjct: 39 VAVDLSPWLMQAD----QQQALLPHFSKEERCMKVAFERAVQWL-RHGCLPVIVVEGRPP 93
Query: 81 PLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGE 140
K A+ ARF AS A G +Q F + Q +LE G+PV A GE
Sbjct: 94 QEKRAAQQARF------ASRNGYAGGGSQQGASQ-FQRLGQTLGMMLEELGLPVFYAPGE 146
Query: 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFEC-------YCISDIE 193
AEA+CA L++ G DAC T D DA L+GA+ ++ ++ T +P EC +
Sbjct: 147 AEAVCAALSAAGCCDACATPDGDALLYGAESLLHTVKLQTGQPRECELRRVGMAAVRRRL 206
Query: 194 AGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
K L +++L G+D+DL G QG+G L + +L G G+ PQ
Sbjct: 207 GLRRGGTKALGVLAMLSGSDYDLEGAQGVGSKGGLAVARY-----LLRGGAAAGQGE-PQ 260
Query: 254 YWGDIKSTEEAVSHSDESMP------MIKSSHCSFCGH---------------PGTKRAH 292
D E ++ + P + K + C CGH PG+ RA
Sbjct: 261 E--DDSEVLERLAELVQRPPRHDLLALTKCTGCQSCGHEASASGRRPTLGCFSPGSGRAG 318
Query: 293 ------FKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIA 346
K C C + GC P G C C+ +R+E E++ ++ ++
Sbjct: 319 KIKRHTGKNPCRCCTPAEDGGCQDAPCG-PCRCAF---HRQETERRVE-----RILERVR 369
Query: 347 LETNFPNDEIVTM------------YLCENNGTFTATDGPSISW-GSPMTEMLVDFLVYH 393
+ +F + + Y+ + G G + W P + D++
Sbjct: 370 RKPSFLAEAQAAVGVFERQAREAAAYVEQRLGELGGAPGRKLHWLHRPRVRAVFDYIDAR 429
Query: 394 QP---WQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIR--------- 441
+ W +R K+LP+L L++ + EF ++ K+
Sbjct: 430 RRQMVWDLPAVRSKLLPVLLEWDLQQEGRGEGEHGPAEGVEFRAVEVQKVHGLKSKIDEL 489
Query: 442 -YGHQSYVVKWKKAASAISGV 461
H YV++W++ S + G+
Sbjct: 490 TGAHWRYVLRWERVDSDVEGL 510
>gi|156395868|ref|XP_001637332.1| predicted protein [Nematostella vectensis]
gi|156224443|gb|EDO45269.1| predicted protein [Nematostella vectensis]
Length = 250
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 125/247 (50%), Gaps = 16/247 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+P + L+ L+ K +AVD S + Q ++ N VP HL + F
Sbjct: 1 MGVKG-LWQLLEPVGKPVTLESLQGKVLAVDASILMNQAIKGMRDGSGNPVPNAHLFVLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN---- 113
R L + PVFV DG LK + L R Y + + L + + ER
Sbjct: 60 HRLCKLLF-YRVKPVFVFDGGVPVLKKKT-LVRAYLEEMQ-TNLNREQRTLQSERARQAR 116
Query: 114 ---QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
+ + + E ELL LFG+P L + EAEA CA L+ G D IT DSD FLFG +
Sbjct: 117 ASAEVSTEMLNESQELLRLFGVPFLVSPMEAEAQCAFLDMTGQTDGTITDDSDVFLFGGR 176
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K I K ECY DI+ GL L R +I ++ + G+D+ G+QG+G +A++
Sbjct: 177 RVYKNIFNQNKHA-ECYTCEDIDKGLALSRSKMIKLAFVTGSDYT-EGIQGLGAVSAMEV 234
Query: 231 VQNFSED 237
+ FS+D
Sbjct: 235 LHEFSQD 241
>gi|449446177|ref|XP_004140848.1| PREDICTED: flap endonuclease GEN-like 2-like [Cucumis sativus]
Length = 563
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN--SVPKPHLRLTFF 58
MGV WD+L+ + L L++KR+ +DLS WIV+ + K + S K +L+ F+
Sbjct: 1 MGVKN-LWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSKFYLKGLFY 59
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQ--TF 116
R L A +FV DG+ +K R A T ++ ++RN+ F
Sbjct: 60 RLRTLIA-LNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQTDANPQQICSLKRNKGSEF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
++E L G+P L A EAEA CA LNSE D C T+DSDAFLFGA+ V + I
Sbjct: 119 SLMIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDI 178
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY + DIE LG R +I +LL+G+D+ GV G+G ++A Q V+ +
Sbjct: 179 CLGDSGHVVCYEMDDIETRLGFGRNSMITFALLLGSDYS-QGVYGMGRESACQLVKAVGD 237
Query: 237 DEIL 240
+L
Sbjct: 238 GAVL 241
>gi|449520116|ref|XP_004167080.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Cucumis
sativus]
Length = 299
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN--SVPKPHLRLTFF 58
MGV WD+L+ + L L++KR+ +DLS WIV+ + K + S K +L+ F+
Sbjct: 1 MGVK-NLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSKFYLKGLFY 59
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQT--F 116
R L A +FV DG+ +K R A T ++ ++RN+ F
Sbjct: 60 RLRTLIA-LNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQTDANPQQICSLKRNKGSEF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
++E L G+P L A EAEA CA LNSE D C T+DSDAFLFGA+ V + I
Sbjct: 119 SLMIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDI 178
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY + DIE LG R +I +LL+G+D+ GV G+G ++A Q V+ +
Sbjct: 179 CLGDSGHVVCYEMDDIETRLGFGRNSMITFALLLGSDYS-QGVYGMGRESACQLVKAVGD 237
Query: 237 DEIL 240
+L
Sbjct: 238 GAVL 241
>gi|321465723|gb|EFX76723.1| hypothetical protein DAPPUDRAFT_33887 [Daphnia pulex]
Length = 231
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 124/274 (45%), Gaps = 57/274 (20%)
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA----RLARFYRSTIDASTLPVAEEGIL 109
R FFRT +L G P+++++G LK+Q R ARF S P E
Sbjct: 1 RNLFFRTASLLEN-GIDPIYILEGKAPELKAQVMQKRREARF------GSNQPATSESAT 53
Query: 110 VERN--QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
+ + QEC ELL G+ + + GEAEA CA LN +G V+ CIT D DAFL+
Sbjct: 54 SKSTGRSRYKYIQQECTELLTALGVVTITSMGEAEAACAGLNHQGVVEGCITIDGDAFLY 113
Query: 168 GAKCVVKCIRPNTKEPFEC--YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
GAK V + + + F C Y + IE L L R LIAM++L G D+ +GV G+G +
Sbjct: 114 GAKTVYRNLSTDIHN-FVCQEYSMDVIETRLNLSRDKLIAMAILFGCDYLPDGVPGVGKE 172
Query: 226 TALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGH 285
+AL+ + IP ++ HCS C H
Sbjct: 173 SALRVIST-----------------IP----------------------LRPPHCSQCKH 193
Query: 286 PGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNC 319
PG+ RAH K C C + + GC +P C C
Sbjct: 194 PGSLRAHAKSGCLLCKSSSGGGC--EPSNKACLC 225
>gi|357498397|ref|XP_003619487.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|355494502|gb|AES75705.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 571
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 125/260 (48%), Gaps = 7/260 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSV--PKPHLRLTFF 58
MGV WD+L+ + L L++KRV VDLS W+VQ + K ++ K HLR F
Sbjct: 1 MGVKN-LWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVCKSHACLKEKVHLRGLFH 59
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN--QTF 116
R L A VFV DG+ +K R A ++ + RN F
Sbjct: 60 RLRALIA-LNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQKETNLQKTTSLRRNLGSEF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+ E L G+ L EAEA CA LNSE D C ++DSD FLFGA+ V + I
Sbjct: 119 SCMISEAKILGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDI 178
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY ++DIE LG R LI +SLL+G+D+ GV G+G D+A Q V++ +
Sbjct: 179 CLGDGGYVVCYEMADIERKLGFGRDSLICLSLLLGSDY-YPGVHGLGPDSACQIVKSIGD 237
Query: 237 DEILNILHKIGNGDIPQYWG 256
+L G G + + G
Sbjct: 238 KFVLKKFASEGLGWVKKRKG 257
>gi|115474331|ref|NP_001060762.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|75162699|sp|Q8W5R1.1|GENL2_ORYSJ RecName: Full=Flap endonuclease GEN-like 2; AltName: Full=OsSEND-1;
AltName: Full=Single-strand DNA endonuclease 1
gi|16923283|dbj|BAB72003.1| single-strand DNA endonuclease-1 [Oryza sativa Japonica Group]
gi|113622731|dbj|BAF22676.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|222639760|gb|EEE67892.1| hypothetical protein OsJ_25722 [Oryza sativa Japonica Group]
Length = 641
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 7/246 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
MGV WD+L+ + L L++K+V VDLS W+VQ +A + + K + L F
Sbjct: 1 MGVK-NLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA--STLPVAEEGILVERNQ--T 115
I +FV DG LK R + A S P + I + RN+
Sbjct: 60 RIRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSE 119
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F ++E L G+P L EAEA CA L+ E D C T+DSDAFLFGA+ V +
Sbjct: 120 FSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRD 179
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ CY + DIE LG R LI++++L+G+D+ NGV G G +TA + V++
Sbjct: 180 VFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYS-NGVNGFGPETACRLVKSVG 238
Query: 236 EDEILN 241
++ IL+
Sbjct: 239 DNLILD 244
>gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member
[Schistosoma mansoni]
Length = 293
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 9/240 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV G W +L + L + VAVDLS WI ++ +P HLR FFR
Sbjct: 1 MGVHG-LWGILSSVQEYRPLSKIGCDSVAVDLSIWICGDKSI---TPLPALHLRNLFFRL 56
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV 120
+ L + P+ V+DG LKS R + T +T + + R F K
Sbjct: 57 VGLLRQ-NTLPIAVLDGVAPSLKSDVMKQRQQKWTGKITTQKCTKPNLNRIR---FSKVS 112
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
QEC++LL FG+P +++ GEAEA+CA LNS VDACIT D DAFL+GA+ V + ++
Sbjct: 113 QECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYRHFSMDS 172
Query: 181 KEPFEC-YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
++ C + + I L L + L+ + +L+G D+ +GV +G AL+ + + +
Sbjct: 173 RDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISSLKSPSL 232
>gi|359490377|ref|XP_002263340.2| PREDICTED: flap endonuclease GEN-like 2-like [Vitis vinifera]
gi|297741051|emb|CBI31782.3| unnamed protein product [Vitis vinifera]
Length = 565
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 127/248 (51%), Gaps = 15/248 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT-FFR 59
MGV WD+L+ + L L++KRV +DLS W+VQ + K ++ K L L F
Sbjct: 1 MGVKN-LWDILESCKKTLPLYHLQNKRVCIDLSCWMVQLQNVNKSHASIKDKLYLKGLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG-----ILVERNQ 114
+ +FV DG+ +K YR +++ T +E + RN
Sbjct: 60 RLRALIALNCSLLFVTDGSIPAIKLAT-----YRRRLNSGTEVTRDETNSHNVPSLRRNM 114
Query: 115 -TFLKCVQECVELLEL-FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
+ C+ + ++L L G+P L EAEA CA LNSE D C T+DSD FLFGA+ V
Sbjct: 115 GSEFSCMIKEAKVLGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTV 174
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ I CY ++DIE+ LG R LI ++LL+G+D+ GV G G ++A Q V+
Sbjct: 175 YRDICLGEGGYVVCYEMADIESTLGFGRNSLITLALLLGSDYS-QGVHGFGPESACQIVK 233
Query: 233 NFSEDEIL 240
+ E+ +L
Sbjct: 234 SVGEEVVL 241
>gi|357139431|ref|XP_003571285.1| PREDICTED: flap endonuclease GEN-like 2-like [Brachypodium
distachyon]
Length = 706
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 7/245 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
MGV WD+L + L+ L++K+V VDLS W+VQ +A + + K + L F
Sbjct: 1 MGVKN-LWDILDSCKQKLPLNHLQNKKVCVDLSCWLVQFCSANRSPAFVKDKVYLKNLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLK---SQARLARFYRSTIDASTLPVAEEGILVERNQTF 116
I +FV DG +K + RL +T D T P + + F
Sbjct: 60 RIRALLALNCSLIFVTDGAIPSVKLATYRRRLGSNSEATHD-ETNPQPLTSLRRNKGSEF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+ ++E L G+P L E EA CA LN + C T+DSDAFLFGA+ V + +
Sbjct: 119 SRMIKEAKNLGLALGIPCLDGVEEGEAQCALLNLTSLCEGCFTSDSDAFLFGARTVYRDV 178
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY + DIE LG RK LI+++LL+G D+ NGV+G G + A + V++ E
Sbjct: 179 FIGEGGYVICYEMEDIEKKLGFGRKSLISLALLLGCDYS-NGVRGFGPEAACRLVKSMGE 237
Query: 237 DEILN 241
D IL+
Sbjct: 238 DTILD 242
>gi|297816098|ref|XP_002875932.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
gi|297321770|gb|EFH52191.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 134/281 (47%), Gaps = 11/281 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKP--HLRLTFF 58
MGV WD+L+P + LD L++KRV VDLS W+V+ K K +LR F
Sbjct: 1 MGVK-YLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCAAKEKVYLRGLFH 59
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKS---QARL-ARFYRSTIDASTLPVAEEGILVERNQ 114
R L A + V DG +K + RL ARF D P E +
Sbjct: 60 RLRALIA-LNCSIILVSDGAIPGIKVPTYRRRLKARF--EVADDGVEPSKETSLKRNMGS 116
Query: 115 TFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
F ++E + G+ L EAEA CA LNSE DAC ++DSD FLFGAK V +
Sbjct: 117 EFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSSDSDIFLFGAKTVYR 176
Query: 175 CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I CY + DI+ LGL R LIA++LL+G+D+ GV+G+ + A + V++
Sbjct: 177 EICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRGLRQEKACELVRSI 235
Query: 235 SEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMI 275
E+ IL + G + K +V ++P++
Sbjct: 236 GENVILEKVASEGLAFAEKPRKSKKQVRPSVCSKKGTLPLV 276
>gi|218200332|gb|EEC82759.1| hypothetical protein OsI_27479 [Oryza sativa Indica Group]
Length = 632
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 125/246 (50%), Gaps = 16/246 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
MGV WD+L+ + L L++K+V VDLS W+VQ +A + + K + L F
Sbjct: 1 MGVK-NLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA--STLPVAEEGILVERNQ--T 115
I +FV G P L FY S + A S P + I + RN+
Sbjct: 60 RIRALLALNCTLLFVT-GNPILL--------FYFSFLAAKESDQPNSHPSISLRRNKGSE 110
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F ++E L G+P L EAEA CA L+ E D C T+DSDAFLFGA+ V +
Sbjct: 111 FSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRD 170
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ CY + DIE LG R LI++++L+G+D+ NGV G G +TA + V++
Sbjct: 171 VFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYS-NGVNGFGPETACRLVKSVG 229
Query: 236 EDEILN 241
++ IL+
Sbjct: 230 DNLILD 235
>gi|224136982|ref|XP_002322464.1| predicted protein [Populus trichocarpa]
gi|222869460|gb|EEF06591.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 142/273 (52%), Gaps = 19/273 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV WD+L+ + L L++KRV +DLS W+VQ + K + KP++R F
Sbjct: 1 MGVKN-LWDILESCKKTLPLHHLQNKRVCIDLSCWMVQLQNVNKTHCGLVKDKPYIRNLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK---SQARLARFYRSTIDASTLPVAEEGILVERN- 113
R L A +FV DG+ +K + RL T D + +++ + RN
Sbjct: 60 HRLRALIA-LNCSLIFVADGSIPAIKLATYRRRLNLGLEVTQDETN---SQKACSLRRNM 115
Query: 114 -QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
F ++E ++ G+P L + EAEA CA LN+E D C ++DSD FLFGA+ V
Sbjct: 116 GSEFSCMIKEAKDIGLALGIPCLDSIEEAEAQCALLNTESLCDGCFSSDSDVFLFGARTV 175
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ I CY + ++E LG R LI ++L++G+D+ GV G+G ++A Q V+
Sbjct: 176 YRDICLGEGHVV-CYEMEEVERKLGFGRNSLITLALILGSDYS-PGVHGLGPESACQIVK 233
Query: 233 NFSEDEILNILHKIGNGDIPQYWGDIKSTEEAV 265
+ + N+L KI + +P + IK++++ +
Sbjct: 234 SIGDS---NVLQKIASEGLP-FAKKIKTSKKQM 262
>gi|356559829|ref|XP_003548199.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 588
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 131/266 (49%), Gaps = 17/266 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKP--HLRLTFF 58
MGV WD+L+ + L L++KRV VDLS W+VQ + K ++ K +LR F
Sbjct: 1 MGVKN-LWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFH 59
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE------EGILVER 112
R L A +FV DG +K L+ + R + VA+ + ++R
Sbjct: 60 RLRALIA-LNCSLIFVSDGAIPAIK----LSTYRRRLNVGKEVQVAQNETNLQKATSLQR 114
Query: 113 N--QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
N F ++E L G+ L EAEA CA LN E D C ++DSD FLFGA+
Sbjct: 115 NMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGAR 174
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V + I CY ++DIE LG R LIA+SLL+G+D+ GV G+G ++A Q
Sbjct: 175 TVYRDICLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDY-YQGVHGLGPESACQI 233
Query: 231 VQNFSEDEILNILHKIGNGDIPQYWG 256
V++ + IL G G + + G
Sbjct: 234 VKSIGDKYILKKFASEGLGWVKKRKG 259
>gi|186510820|ref|NP_001118795.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|166221584|sp|Q9M2Z3.2|GENL2_ARATH RecName: Full=Flap endonuclease GEN-like 2
gi|332644951|gb|AEE78472.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 600
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 120/245 (48%), Gaps = 9/245 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT-FFR 59
MGV WD+L+P + LD L++KRV VDLS W+V+ K K + L FF
Sbjct: 1 MGVK-YLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKS---QARL-ARFYRSTIDASTLPVAEEGILVERNQT 115
+ + V DG +K + RL ARF D P E +
Sbjct: 60 RLRALIALNCSIILVSDGAIPGIKVPTYKRRLKARF--EIADDGVEPSKETSLKRNMGSE 117
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F ++E + G+ L EAEA CA LNSE DAC + DSD FLFGAK V +
Sbjct: 118 FSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYRE 177
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
I CY + DI+ LGL R LIA++LL+G+D+ GV+G+ + A + V++
Sbjct: 178 ICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRGLRQEKACELVRSIG 236
Query: 236 EDEIL 240
++ IL
Sbjct: 237 DNVIL 241
>gi|449446847|ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
Length = 1541
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 167/380 (43%), Gaps = 54/380 (14%)
Query: 94 STIDASTLPVAEEGILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSE 151
S ++ L + +E +ERN + + EC ELL++FG+P + A EAEA CA +
Sbjct: 861 SVLEQERLNLGDEQKRLERNAESVNSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELA 920
Query: 152 GYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIG 211
VD +T DSD FLFGA+ V K I + K E Y + DIE LGL R LI M+LL+G
Sbjct: 921 NLVDGVVTDDSDVFLFGARSVYKNIFDDRKY-VETYFMKDIEHELGLNRDKLIQMALLLG 979
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDES 271
+D+ GV GIG+ A++ + F E+ + LHK +E + D S
Sbjct: 980 SDY-TEGVSGIGIVNAVEVMNAFPEE---DGLHKF---------------KEWIESPDPS 1020
Query: 272 MPMIKSSHCSFCGHP-GTKRAHFKFSCEYCINDNNEGCLKK--PDGFKCNCSLCNKNRKE 328
+ + H G+K + +C +E + K + S NK+R
Sbjct: 1021 ILGPLGAKTGLNAHKRGSKASENDTTCSNSSGSASEENISKDLKENMAVKQSFMNKHR-- 1078
Query: 329 KEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVD 388
+NW I + FP++ +++ Y+C SWG P +L
Sbjct: 1079 ---NVSKNWHIP--------SEFPSETVISAYICPQ----VDKSAEPFSWGKPDHFVLRR 1123
Query: 389 FLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYV 448
W+ S + +LP+L+ E + + Q L Y F+ R KIR
Sbjct: 1124 LCWEKFGWENSKADELLLPVLN-----EYSKHETQLRLEAFYTFNE-RFAKIRSK----- 1172
Query: 449 VKWKKAASAISGVKYTAPVD 468
+ KKA +I+G + +D
Sbjct: 1173 -RIKKAVKSITGSRSAVLMD 1191
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W+LL P R ++ L K++A+D S W+VQ A++ + V HL L F
Sbjct: 1 MGVQG-LWELLAPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDDRGEMVRNAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLA-RFYRSTIDASTLPVAEEGIL 109
FR I PVFV DG LK + +A R R A AE+ +L
Sbjct: 59 FRRICKLLFLRTKPVFVFDGATPALKRRTLIARRRQRENAQAKVRKTAEKLLL 111
>gi|226529749|ref|NP_001149363.1| XPG I-region family protein [Zea mays]
gi|224029981|gb|ACN34066.1| unknown [Zea mays]
gi|413941545|gb|AFW74194.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 122/245 (49%), Gaps = 6/245 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
MGV WD+L + L L++K+V VDLS W+VQ +A + + + + L F
Sbjct: 1 MGVK-NLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL-VERNQT--F 116
I +FV DG +K R + +A+ + + + RN++ F
Sbjct: 60 RIRALIALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEF 119
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+ ++E L G+P L EAEA CA LN D C T+DSD+FLFGAK V + +
Sbjct: 120 SRMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTVYRDV 179
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY + DI+ LG R LI++++L+G+D+ NGV G G + A + V++ +
Sbjct: 180 FIGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYS-NGVHGFGPEAACRLVKSLGD 238
Query: 237 DEILN 241
D +L
Sbjct: 239 DTVLG 243
>gi|443691424|gb|ELT93282.1| hypothetical protein CAPTEDRAFT_209048 [Capitella teleta]
Length = 270
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 125/242 (51%), Gaps = 26/242 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVP--KPHLRLTFF 58
MGV W LLKP + + LR + +AVD + W+++ E +P KPHL+
Sbjct: 1 MGVT-HLWPLLKPAGQIYSWEDLRGRTLAVDSAIWLMETE------QIPCRKPHLKNALS 53
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA---STLPVAEEGILVERNQT 115
R + L + VFV++G LK+ A LA+ S + S P A E
Sbjct: 54 RIMTLM-RHDVRLVFVLEGQKKELKA-ATLAKRSASPVKKACRSLFPPAPE--------- 102
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F V+E LL+L G+P +++ GEAEALC LN G V+ IT DSDAFLFGA V K
Sbjct: 103 FSSKVREMQHLLDLLGIPSVQSSGEAEALCGVLNERGVVEGVITNDSDAFLFGATKVYKN 162
Query: 176 IRPNTKEPF--ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
N + E Y + ++ LG RK L+A++LL G D +G QG+G AL+ +++
Sbjct: 163 FTANKAKESEQEVYRMKRLQGLLGADRKGLVALALLAGCDFT-SGSQGVGSTGALKLLKH 221
Query: 234 FS 235
+
Sbjct: 222 WG 223
>gi|242080167|ref|XP_002444852.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
gi|241941202|gb|EES14347.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
Length = 698
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 6/251 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
MGV WD+L + L L++K+V VDLS W+VQ +A + + + + L F
Sbjct: 1 MGVK-NLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL-VERNQT--F 116
I +FV DG +K R + +A+ + + + RN++ F
Sbjct: 60 RIRALLALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEF 119
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+ ++E L G+P L EAEA CA LN D C T+DSD+FLFGA+ V + +
Sbjct: 120 SRMIKEAKHLGLALGIPCLDGVEEAEAQCAMLNFASLCDGCFTSDSDSFLFGARTVYRDV 179
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY + DI+ LG R LI++++L+G+D+ NGV G G + A + V++ +
Sbjct: 180 FIGEGGYVICYEMEDIQKKLGFGRNSLISLAVLLGSDYS-NGVHGFGPELACRLVKSVGD 238
Query: 237 DEILNILHKIG 247
D IL+ + G
Sbjct: 239 DAILDQILSDG 249
>gi|195626660|gb|ACG35160.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 6/245 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
MGV WD+L + L L++K+V VDLS W+VQ +A + + + + L F
Sbjct: 1 MGVK-NLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL-VERNQT--F 116
I +FV DG +K R + +A+ + + + RN++ F
Sbjct: 60 RIRALIALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEF 119
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+ ++E L G+P L EAEA CA LN D C T+DSD+FLFGAK + +
Sbjct: 120 SRMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTFYRDV 179
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
CY + DI+ LG R LI++++L+G+D+ NGV G G + A + V++ +
Sbjct: 180 FIGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYS-NGVHGFGPEAACRLVKSLGD 238
Query: 237 DEILN 241
D +L
Sbjct: 239 DTVLG 243
>gi|221113045|ref|XP_002168588.1| PREDICTED: flap endonuclease GEN homolog 1-like [Hydra
magnipapillata]
Length = 299
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 18/245 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLRLTFFR 59
MGV WD++ D LR K + VDLS WIV+ AIK K SV H+R FFR
Sbjct: 1 MGVK-YLWDIINSSKEKTNPDSLRGKVITVDLSIWIVE---AIKLKQSVANSHIRNMFFR 56
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
I KFG + V++G LK R F + + T V RN+ F
Sbjct: 57 -ICYLRKFGVKLIIVIEGKAPDLKQNTMRYRNFCQYGVKLGTAST------VGRNR-FQA 108
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC ELL+L G+P ++A GEAE +CA LNS+ D C+T D D FL+G KC+ +
Sbjct: 109 LILECCELLDLLGIPYIRATGEAEQMCAFLNSKKISDGCLTNDGDFFLYGGKCIYRDFSA 168
Query: 179 NTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV--QNFS 235
+ K P Y I+ +G+ R +I ++LL G D+ + GV GIG +F+ ++F
Sbjct: 169 DPKNPCVSTYTQEKIKDKIGITRHDMIGIALLCGCDY-IKGVSGIGKSLVSKFISEKSFK 227
Query: 236 EDEIL 240
E+ ++
Sbjct: 228 ENLLV 232
>gi|255070381|ref|XP_002507272.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
gi|226522547|gb|ACO68530.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
Length = 1108
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 42/342 (12%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
+LL LFG+P + A EAEA CA +NSEG VDA IT DSDAFLFGA V + + NTK+
Sbjct: 806 DLLTLFGVPYVIAPQEAEAQCAWMNSEGLVDAVITEDSDAFLFGASTVYRNVF-NTKKYV 864
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNIL 243
E Y + +I+ +GLKR + ++LL+G+D+ G+ G+G+ AL+ FS D +
Sbjct: 865 EVYSVENIQRDIGLKRAQMAELALLLGSDY-TEGIPGVGIVNALEIASVFSGMDGLTTFR 923
Query: 244 HKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCIND 303
+ + NGD+P + ++ S S+P K + G G + ++D
Sbjct: 924 NWVENGDLPD---QVNRGNRCLAGS--SLP--KKHVVAKDGEGG-----------HLVSD 965
Query: 304 NNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCE 363
E + +G N L + K+K Q W L +FP+ ++ Y
Sbjct: 966 -KEKNIDLKEGEVANIYLQREIFKQKHQAARTRW--------ILPNDFPSVAVIEAYA-- 1014
Query: 364 NNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQ 423
+ + WG P E+L F + W + + P++ T E Q
Sbjct: 1015 --KPLVDSSKVHLEWGKPNFELLRVFCLESFNWGIGKTDELLEPVIQTWERAER-----Q 1067
Query: 424 TLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTA 465
T++ +F S+ +I + + + +AI+G+K+T+
Sbjct: 1068 TVI---KDFFSVSTEQINFAVPVARFRSARIQNAITGLKFTS 1106
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHL---R 54
MGV G W+LL+P R + L +RVAVD S W+VQ A++ + + HL
Sbjct: 1 MGVKG-LWNLLEPTGRRVDITALAGQRVAVDASIWLVQFIKAMRDERGDMIHNAHLLGSL 59
Query: 55 LTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
+FFR I G PVFV DG LK +R
Sbjct: 60 FSFFRRICRMLYHGISPVFVFDGATPTLKRHTVASR 95
>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
Length = 247
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 20/256 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL+ + L+ L +K +AVD+S W+ + ++ + + HL F
Sbjct: 1 MGVKG-LWKLLESAGQPITLESLENKILAVDISLWLNESLRGMRDHQGSLIENAHLLGLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ--ARLARFYRSTIDASTLPVAEEGILVERNQT 115
+R L F PVFV DG LK Q ++L RS + T + E +R +
Sbjct: 60 YRLCKLLF-FKIRPVFVFDGGVPLLKKQTISKLVDVQRSLEEQQTSLIQEH----KRQER 114
Query: 116 FLKCVQ-----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
V EC ELL LFG+P + + EAEA CA L+ D IT DSD FLFG +
Sbjct: 115 MAASVSNEMYSECQELLSLFGIPYIVSPMEAEAQCAVLDFTNQTDGTITDDSDIFLFGGR 174
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ + + +K E Y I+ +GL RK +I ++ L+G+D+ +G++ +G+ A++
Sbjct: 175 NIYRYVFRESKLA-EFYDSQRIQRLMGLDRKKMITLAYLLGSDYT-DGIKNVGIVMAMEL 232
Query: 231 VQNFSEDEILNILHKI 246
+ F +D L L KI
Sbjct: 233 LSTFGDD--LTGLQKI 246
>gi|405964237|gb|EKC29743.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 417
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 159/361 (44%), Gaps = 56/361 (15%)
Query: 66 KFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVE 125
K G V V DG K +A R + S V+R F V++C E
Sbjct: 2 KQGVLLVMVADGIAPECKREAMALRSKEGGVTNS----------VDR-PWFKSIVEKCFE 50
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
+L+ G+P +KA GEAEA CA L+ G VD +T+DSDA L+GA+ + +
Sbjct: 51 VLKCLGLPCIKAPGEAEAYCAWLDENGLVDGVLTSDSDALLYGARTFDYAV--------D 102
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS---EDEILNI 242
Y +S IE LG+ R+ L+AM++L+G D+D G++ IG++ A + + +D I
Sbjct: 103 LYEMSVIEERLGMTRETLVAMAMLVGCDYD-EGIRDIGIEKAQELFRELRSNHKDPFTRI 161
Query: 243 LHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCIN 302
+ N ++ + +++S+E K +HC C H GTK H K C C
Sbjct: 162 MSWRENQEL-----------KTLTNSEEK----KVAHCKLCQHKGTKTLHDKEGCHDC-- 204
Query: 303 DNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLC 362
+ + C + C C QK+ ++ K + FPN +V +L
Sbjct: 205 SSVKSC-DQSSNVTCTCGSVY------HQKEKHTLELRYYEKALRNSAFPNKMLVDEFLH 257
Query: 363 ENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPV 422
N+ + P+++W L+ L+ S+ + L + I L+E N V
Sbjct: 258 ANDD----LEQPNLNWKPINITRLLKILL-----SASFKKMAELVVQLQIILKECKQNFV 308
Query: 423 Q 423
+
Sbjct: 309 K 309
>gi|357113521|ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824635 [Brachypodium
distachyon]
Length = 1460
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 151/343 (44%), Gaps = 45/343 (13%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 871 ECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 930
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
E Y + DIE+ LGL R LI M+LL+G+D+ G+ GIG+ A++ V FSE++ L
Sbjct: 931 Y-VETYFMKDIESELGLTRDQLIRMALLLGSDY-TEGISGIGIVNAIEVVHAFSEEDGLQ 988
Query: 242 ILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCI 301
+ W I+S + A+ E S+ G+ +++
Sbjct: 989 KFRE---------W--IESPDPAILGKLEKETSDGSTRRKSGGNESSEKG---------- 1027
Query: 302 NDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYL 361
N C++ DG + N E +K N V + + FP++ +++ Y+
Sbjct: 1028 NSLEPECVEGSDGKHSS------NETEHIKKIFMNKHRNVSKNWHIPSTFPSETVISAYI 1081
Query: 362 CENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNP 421
T SWG P +L W + +LP+ LRE +
Sbjct: 1082 SPQVDDSTE----RFSWGRPDLSLLRKLCWERFGWNKEKADELLLPV-----LREYNKHE 1132
Query: 422 VQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYT 464
Q + Y F+ R KIR + KKA I+G ++
Sbjct: 1133 TQLRMEAFYSFNE-RFAKIRS------KRIKKAIKGITGKTFS 1168
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W LL P R ++ L KR+AVD S W+VQ A+ K + V H+ L F
Sbjct: 1 MGVHG-LWGLLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMVRDAHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLA-RFYRSTIDASTLPVAE 105
R I A PVFV DG LK + + R +R A AE
Sbjct: 59 LRRICKLLFLRARPVFVFDGATPALKRRTLASRRRHRDAAQAKVRKTAE 107
>gi|390361636|ref|XP_793916.3| PREDICTED: flap endonuclease GEN homolog 1-like [Strongylocentrotus
purpuratus]
Length = 234
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 117/237 (49%), Gaps = 37/237 (15%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETA---IKKNSVPKPHLRLTF 57
MGV W +L P E ++ L+ K++AVDL+ W+V+ + + + V KPHLR F
Sbjct: 1 MGVQ-NLWQILAPVKSEESIESLKGKKIAVDLAIWLVESQVTGMKMMQGRVSKPHLRNLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
FRT ++F + G VFV+DGTP LK + + RN+
Sbjct: 60 FRT-SIFLRLGVKLVFVIDGTPPELKWEE----------------------IARRNE--- 93
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
V L G +G G VD C+T D DAFL+GA+ V + +
Sbjct: 94 ------VRLGGGGGGGARGGRGGWRGRGRGGGGGGIVDGCMTEDGDAFLYGARIVYRNLN 147
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
T + +CY + DIE L L R+ L+A+++L+G D+ GV G+G + A++F+++
Sbjct: 148 MATGK-VDCYRMDDIETKLDLDRRRLVALAILLGCDYLPKGVPGVGKEVAMRFMKSL 203
>gi|323456781|gb|EGB12647.1| hypothetical protein AURANDRAFT_4733, partial [Aureococcus
anophagefferens]
Length = 238
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 116/242 (47%), Gaps = 12/242 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL P R ++ L +A+D+S W+ Q A++ + + HL T
Sbjct: 1 MGVQG-LWKLLAPCGRRISVETLEHTTLAIDVSIWLTQFVKAMRDDEGRPIRNAHLIGTL 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
R L G PVFV DG +K++ R R + A + R+
Sbjct: 60 RRVAKLL-YHGVRPVFVFDGGVPVVKARLIRQRQMRREKNRDDREAASLRREMSRSSRDA 118
Query: 118 KCVQE-----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
V E + LL L G+P + A EAEA CA L + G + +T DSDAF FGA+ V
Sbjct: 119 DSVTEDMREDTMHLLRLLGVPYVVAPMEAEAQCAALEAAGLCEGVVTDDSDAFCFGARRV 178
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K I + K E Y SD L L R A++LL+G D+D NGV G+G+ A++ +Q
Sbjct: 179 YKNIFDDRKY-VEAYYASDCARDLRLGRDEFCALALLLGGDYD-NGVAGVGVVNAMEVLQ 236
Query: 233 NF 234
F
Sbjct: 237 AF 238
>gi|225452522|ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
Length = 1513
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 167/378 (44%), Gaps = 49/378 (12%)
Query: 96 IDASTLPVAEEGILVERNQTFLKCVQ-----ECVELLELFGMPVLKAKGEAEALCAQLNS 150
+D L + +E +ERN CV EC ELL++FG+P + A EAEA CA +
Sbjct: 813 LDQECLNLGDEQRKLERN---ADCVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL 869
Query: 151 EGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLI 210
VD +T DSD FLFGA+ V K I + ++ E Y + DIE LGL R+ +I M+LL+
Sbjct: 870 ANLVDGVVTDDSDVFLFGARSVYKNIF-DERKYVETYFMKDIETELGLNREKVIRMALLL 928
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDE 270
G+D+ GV GIG+ A++ + +F E++ L+ + P G + E S S +
Sbjct: 929 GSDY-TEGVSGIGIVNAIEVLNSFPEEDGLHKFREWVESPDPNILGKVNV--ETGSSSRK 985
Query: 271 SMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKE 330
+ S S +K F N++NE D + + +K
Sbjct: 986 RGSKVGSGDQSH-----SKNNMDAFDENVSQNEHNESV----DDIQSGKQIF----MDKH 1032
Query: 331 QKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFL 390
+ +NW I ++FP++ +++ Y T SWG P +L
Sbjct: 1033 RNVSKNWHIP--------SSFPSETVISAYASPQVDQSTEP----FSWGKPDLFVLRKLC 1080
Query: 391 VYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVK 450
+ W + +LP+ L+E + Q L Y F+ R KIR +
Sbjct: 1081 LEKFGWGNQKADELLLPV-----LKEYNKHETQLRLEAFYTFNE-RFAKIRS------KR 1128
Query: 451 WKKAASAISGVKYTAPVD 468
KKA I+G + + +D
Sbjct: 1129 IKKAVKGITGSQTSELLD 1146
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L KR+A+D S W++Q A+ K V HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
FR I PVFV DG LK + +AR
Sbjct: 59 FRRICKLLFLRTKPVFVFDGGTPALKRRTVVAR 91
>gi|414865352|tpg|DAA43909.1| TPA: hypothetical protein ZEAMMB73_723390 [Zea mays]
Length = 1531
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 919 ECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 978
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
E Y + DIE+ LGL R+ LI M+LL+G+D+ GV GIG+ A++ V F E++ L
Sbjct: 979 Y-VETYFMKDIESELGLSREQLIRMALLLGSDY-TEGVSGIGIVNAIEVVHAFPEEDGLQ 1036
Query: 242 ILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCI 301
+ P +G + H G ++ +
Sbjct: 1037 KFKEWIESPDPSIFGKL--------------------HMEISGRSKKRK----------L 1066
Query: 302 NDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKH-------------ENWWIKVCSKIALE 348
++N+ K G + C + +++ + +H +NW +
Sbjct: 1067 DENDSDGKGK--GLEPECIQGSDDKQSSNEDEHVKEIFMSKHRNVSKNWHVPAT------ 1118
Query: 349 TNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPM 408
FP++++V Y+ + T SWG P +L W + +LP+
Sbjct: 1119 --FPSEKVVNAYISPQVDSSTEP----FSWGRPDLGLLRRLCWERFGWGKEKADELLLPV 1172
Query: 409 LSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVD 468
LRE + Q + Y F+ R KIR K+ AI G+ + +D
Sbjct: 1173 -----LREYNKHETQLRMEAFYSFNE-RFAKIRS---------KRIKKAIKGITGKSFLD 1217
Query: 469 SD 470
+D
Sbjct: 1218 AD 1219
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W+LL P R ++ L KRVAVD S W+VQ A++ +S V HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRVAVDASIWMVQFMRAMRDDSGEMVRDAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I PVFV DG LK
Sbjct: 59 LRRICKLLFLRVRPVFVFDGATPALK 84
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 131/281 (46%), Gaps = 34/281 (12%)
Query: 10 LLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRT 60
++K R L L+ K+V++D I Q TAI++ + P HL F+RT
Sbjct: 1 MVKEIKREVQLSELKGKKVSIDAYNAIYQFLTAIRQPDGTPLMDSQGRVTSHLSGIFYRT 60
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQA----RLARFYRSTIDASTLPVAEEGILVERNQTF 116
I+L + G P++V DG P LK+Q R + E L + +Q
Sbjct: 61 ISLLEE-GVIPIYVFDGKPPELKAQELERRRKIKEEAEKKLEKAKEEGETKELKKYSQMA 119
Query: 117 LKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
+ + E LLE G+PV++A E EA A L S+GY A + D D+ LFGA +
Sbjct: 120 TRLTNDMAEEGKRLLEAMGIPVVQAPSEGEAEAAYLCSQGYTWAAASQDYDSLLFGANKL 179
Query: 173 VKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
++ + K E + D+ G+ R+ L+ + +LIG D+D +G++G
Sbjct: 180 IRNLTLTGKRKLPKKDVYVEIKPELIELEDLLKKFGITREQLVDIGILIGTDYDPDGIKG 239
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTE 262
IG TAL+ ++ + + E + G++P+Y D+ E
Sbjct: 240 IGPVTALRIIKKYGKIE-----KAVEKGELPKYILDLNINE 275
>gi|427786261|gb|JAA58582.1| Putative xp-g/rad2 dna repair endonuclease [Rhipicephalus
pulchellus]
Length = 778
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 144/309 (46%), Gaps = 46/309 (14%)
Query: 154 VDACITADSDAFLFGAKCVVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGN 212
VD CIT D DAFL+GAK V + + K+P Y ISDIE+ LGL R+ L+A+++L G
Sbjct: 2 VDGCITQDGDAFLYGAKTVYRKLCVEDKDPHVLSYKISDIESKLGLDREKLVALAVLAGC 61
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESM 272
D+ +GV+ +G +TA++ + F + L L + D K S E++
Sbjct: 62 DY-FSGVRNVGKETAIKLLNKFGDSGSLERLR--------DWKRDAK-----YSRLQETL 107
Query: 273 PM--IKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKE 330
K SHC C HPGT++ H C+ C + E K C C E E
Sbjct: 108 DTNCKKPSHCGNCQHPGTQKTHRVDGCDMC---STEASCTKSVVSNCACKW-----HEAE 159
Query: 331 QKKHENWWIKV-CSKIALE--TNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLV 387
K + W +++ K AL+ NFP + +++ +L E + D +W P +
Sbjct: 160 AVKSQ-WRMELDIRKKALDEHENFPPEGVISEFLTEKDD-IQCVDS---NWRFPSAKKFE 214
Query: 388 DFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKI-----RY 442
DF+ WQ R+K+ P+L+ +L + ++ C E S++ VKI +
Sbjct: 215 DFMFTKMGWQLETSREKLFPLLTRCHLEQGGSS------C--KEVASLKPVKIVKQRVQR 266
Query: 443 GHQSYVVKW 451
Y V+W
Sbjct: 267 NADYYEVEW 275
>gi|301609960|ref|XP_002934532.1| PREDICTED: flap endonuclease GEN homolog 1-like [Xenopus (Silurana)
tropicalis]
Length = 256
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 97/184 (52%), Gaps = 12/184 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L P + L+ L K +AVDLS W+ + + + V KPHLR FF
Sbjct: 1 MGVT-DLWSILGPVKKHVPLESLAGKTLAVDLSIWVCEAQMVKQMIGVVHKPHLRNLFF- 58
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLK 118
I+ G VFV +G +K++ R R AS P + +++ K
Sbjct: 59 CISSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSASAAPP-------KAGRSYFK 111
Query: 119 CV-QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
V +EC+ +LE G+P ++A GEAEA+CA LN+ GYVD CIT D D FL+GA+ V +
Sbjct: 112 SVLKECLLMLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGAQTVYRNFT 171
Query: 178 PNTK 181
N K
Sbjct: 172 MNVK 175
>gi|336265442|ref|XP_003347492.1| Rad2 protein [Sordaria macrospora k-hell]
gi|380087974|emb|CCC05192.1| putative Rad2 protein [Sordaria macrospora k-hell]
Length = 1279
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 127/301 (42%), Gaps = 74/301 (24%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL FG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 888 MITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 946
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF---S 235
N + ECY ++DIE L L R+ LIA++ L+G+D+ G+ G+G TA++ + F S
Sbjct: 947 NGNKFVECYLLNDIEKELSLGREQLIALAQLLGSDY-TEGLPGVGPVTAVEILSEFPPSS 1005
Query: 236 EDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKF 295
E ++ L D Q+W ++ST HP
Sbjct: 1006 ESGPMSSLK-----DFKQWWTTLQSTP----------------------HP--------- 1029
Query: 296 SCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDE 355
+ SL N + K +K H +K+ L NFP+
Sbjct: 1030 ----------------------DASLLNTPFRRKFRKSH-------LTKLFLPLNFPSPA 1060
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
+ YL +T P WG P E L +L+ W P + ++P++ + R
Sbjct: 1061 VFEAYL---RPEVDSTPDP-FQWGVPDLEGLRQYLMQTIGWSPERTDEVLVPVIRDMNRR 1116
Query: 416 E 416
E
Sbjct: 1117 E 1117
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L L KR+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I +G PVFV DG LK
Sbjct: 59 FRRICKLLWYGIKPVFVFDGGAPALK 84
>gi|255072853|ref|XP_002500101.1| predicted protein [Micromonas sp. RCC299]
gi|226515363|gb|ACO61359.1| predicted protein [Micromonas sp. RCC299]
Length = 827
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/433 (24%), Positives = 172/433 (39%), Gaps = 76/433 (17%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPKPHL-----------RLTFFRTINLFAKFGAFPVFV 74
K +AVDLS WI+Q T + V L ++ F R +N + + G PV V
Sbjct: 67 KALAVDLSLWIIQACTQQALDEVYNEDLGFDDPDASKTAKVVFERALN-YLRHGCVPVGV 125
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPV 134
+DG K A AR+ + +E+L G+P
Sbjct: 126 IDGQAPWQKLGALRARWGAHAGGGGGAFGRCGEV--------------ALEVLRALGLPG 171
Query: 135 LKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEA 194
++A GEAEA CA ++S G VD C+T+D D+ LFGA+ V K +R + + + + + +EA
Sbjct: 172 VEAPGEAEATCAVMDSMGIVDGCVTSDGDSLLFGARTVFKTLRLSQNDQRDLF-MERVEA 230
Query: 195 G-------LGLKRKHL----IAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
LG +H+ A++LL G D+DL G + +G AL V+ ++DE
Sbjct: 231 ADVGKRLMLGDDVEHVAPALTALALLTGGDYDLTGAKNVGGTKALLVVKALAKDEARRTR 290
Query: 244 HKIGNGDIPQYWGDIKSTEEAVSHSDESMPMI-KSSHCSFCGHPGTKRAHFK---FSCEY 299
+ G D Q + S D ++ + K + C+ C H G + K C
Sbjct: 291 AEPGGRDRRQRSLPARLDAFLASAPDPTIEALDKCTGCARCKHDGCLKNKVKNHVRGCSE 350
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPND--EIV 357
C D GC+++ DG +C C + E W KV + + +
Sbjct: 351 CGTD--AGCVER-DGVECECPF--------HARADERWLHKVRERANATDGYARSFRDAA 399
Query: 358 TMYLCENNGTFTA-TDGPSISW--------------------GSPMTEMLVDFLVYHQPW 396
Y + A D + W P L + + + W
Sbjct: 400 RGYAAQARDAEEALGDASDVEWVERAENDGDEFDSFRKMRWRRRPDVAALQEIMETYCQW 459
Query: 397 QPSYIRQKMLPML 409
+P R+K+LP+L
Sbjct: 460 EPRRTREKLLPVL 472
>gi|242041837|ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
gi|241922167|gb|EER95311.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
Length = 1489
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 872 ECQELLQMFGLPYIIAPTEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 931
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
E Y + DIE+ LGL R+ LI M+LL+G+D+ GV GIG+ A++ V F E++ L
Sbjct: 932 Y-VETYFMKDIESELGLTREQLIRMALLLGSDY-TEGVSGIGIVNAIEVVHAFPEEDGL 988
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W+LL P R ++ L KRVAVD S W+VQ A++ +S V HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRVAVDASIWMVQFMRAMRDDSGEMVRDAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I PVFV DG LK
Sbjct: 59 LRRICKLLFLRVRPVFVFDGATPALK 84
>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
Length = 327
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 18/228 (7%)
Query: 23 LRDKRVAVDLSYWIVQHETAIK-------KNSVPKPHLRLT--FFRTINLFAKFGAFPVF 73
L +K++ +D I Q ++I+ KNS + F++TIN+ + G P++
Sbjct: 19 LNNKKIVIDAMNVIYQFLSSIRLRDGTPLKNSSGETTSAYNGIFYKTINML-EMGLTPIW 77
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQECVE 125
V DG LK R R S VA++ E+ Q F K V C
Sbjct: 78 VFDGQAHELKEITREERRKTRQKALSEYLVAKKEEDTEKMQKFAKRMNYLDTNMVLNCKR 137
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL+L G+P L + E EA CA++ +G A ++ D D+ L+GA V++ I ++ + FE
Sbjct: 138 LLDLMGVPHLTSGSEGEAQCAEIVKKGDAFAVVSQDYDSLLYGADRVIRNITSSSSKEFE 197
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ D+ L + R LI MS+LIG D++ GV+G+G AL V+N
Sbjct: 198 YIELKDVLDELDINRSQLIDMSILIGTDYNPKGVKGLGPKKALDVVKN 245
>gi|397642742|gb|EJK75426.1| hypothetical protein THAOC_02851 [Thalassiosira oceanica]
Length = 704
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 140/308 (45%), Gaps = 56/308 (18%)
Query: 19 GLD--FLRDKR--------VAVDLSYWIVQHETAIKKNSV-PKPHLRLTFFRTINLFAKF 67
GLD LR +R +AVDLS W+++ + +S+ P + L + RT++L
Sbjct: 80 GLDAFHLRKRRESDEKHHILAVDLSLWVMEGLKSTVLDSLHADPAVHLVYNRTVSLLL-L 138
Query: 68 GAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELL 127
G VFV++G RS++ + A G F+ + C E+L
Sbjct: 139 GFRLVFVMEGK-------------RRSSLGQT----ASRG-----GSHFMSTSRRCGEVL 176
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFE 185
L G+ VL+A+ E E LCA LNS G VD +++D DAFL+GA+ + K + TK
Sbjct: 177 RLLGVTVLEAEAEGEQLCALLNSRGIVDGVVSSDGDAFLYGARVIYKGFTMDNLTKGSVL 236
Query: 186 CYCISDIEAG-----LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
Y +++ L R+ L+A + L G+D GVQ +G A F+ E + L
Sbjct: 237 KYDANELRVASSHGNFPLSREDLVAFAALSGSD-VFQGVQHLGWKKASMFLGACPEGKSL 295
Query: 241 NILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYC 300
+ L +G W + + T + D P+ + CS C HPG+K H K C C
Sbjct: 296 DTL--LG-------WSESEKTSD-----DPRCPVSSGTTCSRCLHPGSKLQHQKKGCTEC 341
Query: 301 INDNNEGC 308
+ C
Sbjct: 342 GTKAGQCC 349
>gi|449676998|ref|XP_002156033.2| PREDICTED: DNA repair protein complementing XP-G cells-like,
partial [Hydra magnipapillata]
Length = 431
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 104/201 (51%), Gaps = 15/201 (7%)
Query: 46 NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQ----ARLARFYRSTIDASTL 101
N V HL L F R L +G PVFV DG LK A++ F + ++ +
Sbjct: 18 NQVYNAHLVLMFHRICKLLF-YGIKPVFVFDGNVPELKKNTQVIAKIEDFLKLEVELNKE 76
Query: 102 PVAEEGILVERNQT------FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVD 155
+ E L R QT + + +LL+LFG+P L + EAEA CA LN +
Sbjct: 77 KIELE--LETRKQTRQAATLSAEVYNDVQDLLQLFGIPYLVSPMEAEAQCAALNLLKLTN 134
Query: 156 ACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHD 215
IT DSD FLFGA+ V K I K P ECY D+E L L R+ LIA++ L G+D+
Sbjct: 135 GTITDDSDIFLFGAENVYKNIFNKDKIP-ECYSSKDLETLLYLTREKLIAVAFLTGSDYT 193
Query: 216 LNGVQGIGLDTALQFVQNFSE 236
G+ G+G TA++ +Q F++
Sbjct: 194 -EGLPGVGGITAMEILQAFAK 213
>gi|356498232|ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like [Glycine
max]
Length = 1707
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA L E VD +T DSD LFGA+ V K I + K
Sbjct: 1025 ECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRK 1084
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
E Y + DIE LGL R+ LI M+LL+G+D+ GV GIG+ A++ V F E++ L
Sbjct: 1085 Y-VETYFMEDIEKELGLTREKLIRMALLLGSDY-TEGVSGIGIVNAIEVVNAFPEEDGL 1141
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L K +AVD S W+VQ A+ K V HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKTLAVDASIWMVQFVKAMRDEKGEMVRNAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLA-RFYRSTIDASTLPVAEEGIL 109
FR I PVFV DG LK + +A R R A AE+ +L
Sbjct: 59 FRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLL 111
>gi|302772224|ref|XP_002969530.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
gi|300163006|gb|EFJ29618.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
Length = 454
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 4/172 (2%)
Query: 101 LPVAEEGILVERNQ--TFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACI 158
+P G+ ++RN+ F + V++ L FG+P L + EAEA CA LN+ G+ DAC
Sbjct: 1 MPNQVAGLPLKRNKGSQFGRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACF 60
Query: 159 TADSDAFLFGAKCVVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN 217
TADSDA LFGAK V K I E Y ++ I G R LIA+ +L+G D+
Sbjct: 61 TADSDALLFGAKVVYKDISLKPGESHVVAYDMTKIRNAFGYGRNSLIALGILLGCDY-FP 119
Query: 218 GVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSD 269
GV G+G + A Q V+ F ED+IL + + G + + K E + SD
Sbjct: 120 GVHGLGPEKAQQIVKKFGEDKILEEMLRQGPVTLAKRTLKCKDKENSTVSSD 171
>gi|296087697|emb|CBI34953.3| unnamed protein product [Vitis vinifera]
Length = 1449
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 15/197 (7%)
Query: 96 IDASTLPVAEEGILVERNQTFLKCVQ-----ECVELLELFGMPVLKAKGEAEALCAQLNS 150
+D L + +E +ERN CV EC ELL++FG+P + A EAEA CA +
Sbjct: 773 LDQECLNLGDEQRKLERN---ADCVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL 829
Query: 151 EGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLI 210
VD +T DSD FLFGA+ V K I + ++ E Y + DIE LGL R+ +I M+LL+
Sbjct: 830 ANLVDGVVTDDSDVFLFGARSVYKNIF-DERKYVETYFMKDIETELGLNREKVIRMALLL 888
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIK-----STEEAV 265
G+D+ GV GIG+ A++ + +F E++ L+ + P G + S+ +
Sbjct: 889 GSDY-TEGVSGIGIVNAIEVLNSFPEEDGLHKFREWVESPDPNILGKVNVETGSSSRKRG 947
Query: 266 SHSDESMPMIKSSHCSF 282
S +ES+ I+S F
Sbjct: 948 SKHNESVDDIQSGKQIF 964
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L KR+A+D S W++Q A+ K V HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
FR I PVFV DG LK + +AR
Sbjct: 59 FRRICKLLFLRTKPVFVFDGGTPALKRRTVVAR 91
>gi|326527491|dbj|BAK08020.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1503
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 878 ECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 937
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
E Y + DIE+ LGL R+ LI M++L+G+D+ G+ GIG+ A++ V F E++ L
Sbjct: 938 Y-VETYLMKDIESELGLTREQLIRMAMLLGSDY-TEGISGIGIVNAIEVVHAFPEEDGL 994
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W LL P R ++ L KR+AVD S W+VQ A+ K + V H+ L F
Sbjct: 1 MGVHG-LWGLLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMVRDAHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I A PVFV DG LK
Sbjct: 59 LRRICKLLFLRARPVFVFDGATPALK 84
>gi|297600506|ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group]
gi|255674294|dbj|BAF11227.2| Os03g0205400 [Oryza sativa Japonica Group]
Length = 1470
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 153/356 (42%), Gaps = 57/356 (16%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 859 ECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 918
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
E Y + DIE+ LGL R+ LI M++L+G+D+ G+ GIG+ A++ F E++ L
Sbjct: 919 Y-VETYLMKDIESELGLTREQLIRMAMLLGSDY-TEGISGIGIVNAIEVAHAFPEEDGLQ 976
Query: 242 ILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCI 301
+ W ++S + G G + +
Sbjct: 977 KFRE---------W-------------------VESPDPTLLGKLGMESGSSSKKKKSGR 1008
Query: 302 N-DNNEGCLKKPDGFKC--NCSLCNKNRKEKE--QKKHENWWIKVCSKIALETNFPNDEI 356
N + +G +P+ K + N+ ++ KE KH N V + + FP++ +
Sbjct: 1009 NHSDGKGNSLEPEYAKGSDDSQSSNETQRIKEIFMSKHRN----VSKNWHIPSTFPSEAV 1064
Query: 357 VTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
+ Y+ T SWG P + +L W + ++P+ LRE
Sbjct: 1065 INAYISPQVDDSTEP----FSWGRPDSGLLRKLCWERFGWSKEKADELLIPV-----LRE 1115
Query: 417 MATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKY--TAPVDSD 470
+ Q + Y F+ R KIR + KKA I+G + T +D D
Sbjct: 1116 YNKHETQLRMEAFYSFNE-RFAKIRS------KRIKKAIKGITGKSFLETDELDHD 1164
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L KR+AVD S W+VQ A+ K + + HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I A PVFV DG LK
Sbjct: 59 LRRICKLLFLRARPVFVFDGATPALK 84
>gi|18405624|ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog;
AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
AltName: Full=XPG homolog
gi|13649704|gb|AAK37472.1| UV hypersensitive protein [Arabidopsis thaliana]
gi|332643872|gb|AEE77393.1| DNA repair protein UVH3 [Arabidopsis thaliana]
Length = 1479
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 159/380 (41%), Gaps = 55/380 (14%)
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL--KCVQECVELLELF 130
F G P S+A + R +D + + +E +ERN + + EC ELL++F
Sbjct: 879 FEEKGVPVEF-SEANIEEEIR-VLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIF 936
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
G+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K E Y +
Sbjct: 937 GIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRK-YVETYFMK 995
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGD 250
DIE LGL R +I M++L+G+D+ G+ GIG+ A++ V F E++ L +
Sbjct: 996 DIEKELGLSRDKIIRMAMLLGSDY-TEGISGIGIVNAIEVVTAFPEEDGLQKFRE----- 1049
Query: 251 IPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLK 310
W V D P I + G KR + I+
Sbjct: 1050 ----W---------VESPD---PTILGKTDAKTGSKVKKRGSASVDNKGIIS-----GAS 1088
Query: 311 KPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTA 370
D + +++R K +NW I + FP++ +++ YL N +
Sbjct: 1089 TDDTEEIKQIFMDQHR-----KVSKNWHIPLT--------FPSEAVISAYL--NPQVDLS 1133
Query: 371 TDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQY 430
T+ SWG P +L W + +LP+L RE Q + Y
Sbjct: 1134 TE--KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRE-----TQLRIEAFY 1186
Query: 431 EFDSIRRVKIRYGHQSYVVK 450
F+ R KIR + VK
Sbjct: 1187 SFNE-RFAKIRSKRINKAVK 1205
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L +KR+A+D S W+VQ A+ K + V HL + F
Sbjct: 1 MGVQG-LWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHL-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
FR I P+FV DG LK + +AR + + + E +L+ R
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLLLNR 113
>gi|346467817|gb|AEO33753.1| hypothetical protein [Amblyomma maculatum]
Length = 266
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 41/243 (16%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTP 79
L LR KR+AVDLS W+ + + K +V R F L + P FV+ G
Sbjct: 2 LKNLRGKRLAVDLSAWVREQKRMAKTKNVSSVPTRNLFNWCKKLLLEHRIKPFFVLGGQR 61
Query: 80 SPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKG 139
+ + + R L+++ G+P +
Sbjct: 62 TGSQQKERKT------------------------------------LVDILGLPCCQIDR 85
Query: 140 EAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR-PNTKEPFECYCISDIEAGLGL 198
+AE++CA LN +G VD CIT SDAFL+GA+ V + + Y ISDIE L
Sbjct: 86 KAESVCAFLNEKGTVDGCITEGSDAFLYGAQTVYRKFNIEEEDPEIDEYNISDIEKKADL 145
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDI 258
RK LIA+++L+G+D G+ G+G+ TA Q ++ F +D+ + L + ++P+ D
Sbjct: 146 NRKKLIALNMLVGSD----GIPGVGMVTAGQLLKEFGDDDPIKRLRRWTPNEVPEASQDK 201
Query: 259 KST 261
ST
Sbjct: 202 PST 204
>gi|340923811|gb|EGS18714.1| putative DNA repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1238
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 9/155 (5%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL+LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 880 MISECQTLLQLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNVF- 938
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY S+IE+ L L R+ LI+++LL+G+D+ G+ G+G TAL+ + +F +
Sbjct: 939 NSNKYVECYLASEIESELSLSREQLISLALLLGSDY-TEGLPGVGPVTALEILSHFPPGD 997
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMP 273
++ ++W D++ S +D S P
Sbjct: 998 KQALIQ------FAEWWTDVQQRGRPAS-ADASSP 1025
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W +L P AR L L KR+A+D S WI Q A++ N++ HL + F
Sbjct: 1 MGVQS-LWTILSPSARPTDLATLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHL-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I +G PVFV DG LK
Sbjct: 59 FRRICKLLWYGVKPVFVFDGGAPALK 84
>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
Length = 1143
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL+LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 816 MVTECQQLLKLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMF- 874
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY +SD+E L RK LI+ + L+G+D+ G+ GIG TAL+ + FS+
Sbjct: 875 NQAKFVECYLVSDLEKEYSLDRKKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFSD 931
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +LKP AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVLKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPTLKRQ 86
>gi|11994123|dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]
Length = 1522
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 159/380 (41%), Gaps = 55/380 (14%)
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL--KCVQECVELLELF 130
F G P S+A + R +D + + +E +ERN + + EC ELL++F
Sbjct: 919 FEEKGVPVEF-SEANIEEEIR-VLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIF 976
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
G+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K E Y +
Sbjct: 977 GIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRK-YVETYFMK 1035
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGD 250
DIE LGL R +I M++L+G+D+ G+ GIG+ A++ V F E++ L +
Sbjct: 1036 DIEKELGLSRDKIIRMAMLLGSDY-TEGISGIGIVNAIEVVTAFPEEDGLQKFRE----- 1089
Query: 251 IPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLK 310
W V D P I + G KR + I+
Sbjct: 1090 ----W---------VESPD---PTILGKTDAKTGSKVKKRGSASVDNKGIIS-----GAS 1128
Query: 311 KPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTA 370
D + +++R K +NW I + FP++ +++ YL N +
Sbjct: 1129 TDDTEEIKQIFMDQHR-----KVSKNWHIPLT--------FPSEAVISAYL--NPQVDLS 1173
Query: 371 TDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQY 430
T+ SWG P +L W + +LP+L RE Q + Y
Sbjct: 1174 TE--KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRE-----TQLRIEAFY 1226
Query: 431 EFDSIRRVKIRYGHQSYVVK 450
F+ R KIR + VK
Sbjct: 1227 SFNE-RFAKIRSKRINKAVK 1245
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 31/141 (21%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAV--------------------------DLSY 34
MGV G W+LL P R ++ L +KR+A+ D S
Sbjct: 1 MGVQG-LWELLAPVGRRVSVETLANKRLAIGKQISGDQLQLYCIIFPASSSSFEFADASI 59
Query: 35 WIVQHETAI---KKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF 91
W+VQ A+ K + V HL + FFR I P+FV DG LK + +AR
Sbjct: 60 WMVQFIKAMRDEKGDMVQNAHL-IGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARR 118
Query: 92 YRSTIDASTLPVAEEGILVER 112
+ + + E +L+ R
Sbjct: 119 RQRENAQTKIRKTAEKLLLNR 139
>gi|242000896|ref|XP_002435091.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
gi|215498421|gb|EEC07915.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
Length = 868
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ V EC ELL +FG+P + + GEAEA CA L +G +T DSDA+LFGA+ V + +
Sbjct: 643 QLVMECQELLRMFGLPFVVSPGEAEAQCAWLEEQGLTQGTVTDDSDAWLFGARTVYRHLF 702
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
+ + P Y + D+ LGL R+ L+A +LL G+D+ GV G+G TA++ + FS +
Sbjct: 703 ASDRRP-SVYRLQDLATQLGLNRQKLVAFALLCGSDY-TAGVSGVGPITAMEVLSEFSGE 760
Query: 238 EILNIL 243
+ L +L
Sbjct: 761 DALQLL 766
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W +L+P + L+ L K +AVD+S W+ Q ++ + HL F
Sbjct: 1 MGVQG-LWQILEPAGKPVALETLESKVLAVDISMWLHQALKGMRDSEGGPAANAHLVALF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
R L +G PVFV DG LK Q AR R
Sbjct: 60 HRACKLLF-YGVKPVFVFDGGVPQLKKQTLAARHQR 94
>gi|297815070|ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321256|gb|EFH51677.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1463
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFL--KCVQECVELLELFGMPVLKAKGEA 141
S+A + R +D + + +E +ERN + + EC ELL++FG+P + A EA
Sbjct: 884 SEANIEEEIR-VLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEA 942
Query: 142 EALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRK 201
EA CA + VD +T DSD FLFGA+ V K I + K E Y + DIE LGL R
Sbjct: 943 EAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRK-YVETYFMKDIEKELGLSRD 1001
Query: 202 HLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+I M++L+G+D+ G+ GIG+ A++ V F E++ L
Sbjct: 1002 KIIRMAMLLGSDY-TEGISGIGIVNAIEVVTAFPEEDGL 1039
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W+LL P R ++ L +KR+A+D S W+VQ A++ + V HL + F
Sbjct: 1 MGVQG-LWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDENGDMVQNAHL-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
FR I P+FV DG LK + +AR + + + E +L+ R
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLLLNR 113
>gi|302810129|ref|XP_002986756.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
gi|300145410|gb|EFJ12086.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
Length = 336
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 101 LPVAEEGILVERNQ--TFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACI 158
+P G+ ++RN+ F + V++ L FG+P L + EAEA CA LN+ G+ DAC
Sbjct: 1 MPNQVAGLPLKRNKGSEFGRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACF 60
Query: 159 TADSDAFLFGAKCVVKCIRPNTKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN 217
TADSDA LFGAK V K I E Y ++ I G R LIA+ +L+G D+
Sbjct: 61 TADSDALLFGAKVVYKDISLKPGESHVVAYDMTKIRNAFGYGRNSLIALGILLGCDY-FP 119
Query: 218 GVQGIGLDTALQFVQNFSEDEILNILHKIG 247
GV G+G + A Q V+ F ED+IL + + G
Sbjct: 120 GVHGLGPEKAQQIVKKFGEDKILEEMLRQG 149
>gi|224002667|ref|XP_002291005.1| nuclease, Fen1 like, Rad27 family [Thalassiosira pseudonana
CCMP1335]
gi|220972781|gb|EED91112.1| nuclease, Fen1 like, Rad27 family, partial [Thalassiosira
pseudonana CCMP1335]
Length = 754
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 174/414 (42%), Gaps = 66/414 (15%)
Query: 28 VAVDLSYWIVQHETAIKKNSV-PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
+AVD S WI + ++ +S P L L + RT L VFV++G
Sbjct: 39 LAVDTSIWICEGISSTALSSFHSDPALYLVYQRTTKLLKLGLGL-VFVLEG--------- 88
Query: 87 RLARFYRSTIDASTLPVAEEGILVER--NQTFLKCVQECVELLELFGMPVLKAKGEAEAL 144
R RST +S E L +R F + C LL L G+PV++A+ E EAL
Sbjct: 89 --KRRVRSTYQSS-----EHHELKQRRSGSQFWSATERCESLLRLLGVPVVRAEAEGEAL 141
Query: 145 CAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCI----------SDIEA 194
CA LN++G D I+ D D FLFGAK + E + C SD
Sbjct: 142 CALLNAKGVCDGVISNDGDCFLFGAKTLYTKFTMENLESRQVMCYDATALMATVDSDGLN 201
Query: 195 G--LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-----DEILNILHKIG 247
G + L R+ L+A +LL G+D G+ +G A+QF+ S ++ + +G
Sbjct: 202 GKTITLSREDLVAFALLTGSDMFGAGLSHVGHKKAVQFLHTCSSLNQRPNQRTCLEELLG 261
Query: 248 NGDIPQYWGDIKSTEEAVSH------SDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCI 301
WGD+ + E+ S D+ I CS C H G+K H K C C
Sbjct: 262 -------WGDVAA--ESASKLNDNQCDDDGPSTITERCCSKCLHSGSKSQHVKNGCTICG 312
Query: 302 NDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYL 361
EGC+ K SL +EK K + + + I E PN+ +V M L
Sbjct: 313 TKPGEGCIVVTSKEKFLRSL-----REKALKMNPPFAPR---GIVNEYFSPNNNMVPMTL 364
Query: 362 -CENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYL 414
+N + T + + SPM + + LV Q YIR+ +L+ + L
Sbjct: 365 DSDNMKRYIVTPDAASLFNSPMI-IKGNTLVASQ----EYIRETFPHLLARLEL 413
>gi|255552654|ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3, putative [Ricinus communis]
Length = 1641
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 969 ECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARNVYKNIFDDRK 1028
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
E Y + DIE LGL R+ LI M+LL+G+D+ G+ GIG+ A++ V F E++ L
Sbjct: 1029 Y-VETYFMKDIERELGLTREKLIRMALLLGSDY-TEGISGIGIVNAIEVVNAFPEEDGL 1085
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G WDLL P R ++ L K++A+D S WIVQ A++ V HL L F
Sbjct: 1 MGVQG-LWDLLAPVGRRVSVETLSGKKLAIDASIWIVQFMKAMRNEKGEMVRNAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLA-RFYRSTIDASTLPVAEEGIL 109
FR I PVFV DG LK + +A R R + A AE+ +L
Sbjct: 59 FRRICKLLYLRTKPVFVFDGATPALKRRTVIARRRQRESAQAKIRKTAEKLLL 111
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 11/179 (6%)
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA--STLPVAEEGILVERNQT 115
F +L A+ G F FV + + R R ID +TL + + +
Sbjct: 740 FDAADLHAEEGEFAKFVS-------QVKGRDLDSVRREIDEEIATLNQQKRNAMRDAEDV 792
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+ + + + +L LFG+P + A EAEA CA+L S G VD IT DSD FLFGA V K
Sbjct: 793 NQQMISQIMTMLRLFGIPYITAPMEAEAQCAELTSLGLVDGVITDDSDVFLFGASRVFKN 852
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ N + EC+ +SD+E LGL R LI ++ L+G+D+ G+ G+G A++ V+ F
Sbjct: 853 MF-NQSKTVECFLLSDLERELGLDRDTLIQLAYLLGSDY-TEGLAGVGPVVAMELVREF 909
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L S G VD +T DSD FLFG + K +
Sbjct: 697 MVTECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNMF- 755
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L RK LI+ S L+G+D+ G+ GIG TAL+ + FS
Sbjct: 756 NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDY-TEGIPGIGPVTALEILTEFS 811
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L +R+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPVLKRQ 86
>gi|303270955|ref|XP_003054839.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462813|gb|EEH60091.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 237
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E +LL LFG+P + A EAEA CA L+ EG+VDA IT DSDAFLFGAK + + + +K
Sbjct: 4 EVQQLLTLFGIPYIIAPQEAEAQCAWLDREGFVDAVITDDSDAFLFGAKTIYRNVF-ESK 62
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y + ++A LGL R + ++LL+G+D+ GV G+G+ AL+ V NF
Sbjct: 63 KYVEFYDANRVDADLGLDRAKMAQLALLLGSDY-TEGVTGVGIVNALEVVLNF 114
>gi|119468577|ref|XP_001257869.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
gi|119406021|gb|EAW15972.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
Length = 1132
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 801 MITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF- 859
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+++ L+G+D+ G+ GIG TAL+ + FS
Sbjct: 860 NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDY-TEGISGIGPVTALEILTEFS 915
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPALKRQ 86
>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
Length = 1140
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 819 MITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF- 877
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L+R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 878 NQSKYVECYLTSDMEKEYALQRRKLISFAHLLGSDY-TEGISGIGPVTALEILTEFS 933
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK +
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPVLKRE 86
>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
Length = 1130
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 799 MITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF- 857
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+++ L+G+D+ G+ GIG TAL+ + FS
Sbjct: 858 NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDY-TEGISGIGPVTALEILTEFS 913
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPVLKRQ 86
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG + K +
Sbjct: 792 MVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMF- 850
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY SD+E L RK LI+ S L+G+D+ G+ GIG TAL+ + FS+
Sbjct: 851 NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDY-TEGIPGIGPVTALEILTEFSD 907
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L +R+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|219121896|ref|XP_002181293.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407279|gb|EEC47216.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 696
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 50/304 (16%)
Query: 28 VAVDLSYWIVQHET--AIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
+AVDLS WI + T A+ +N P L L F RT+ L + G +FV++G +++
Sbjct: 65 LAVDLSIWICESLTSRAMTENHA-NPALHLVFSRTMKLLS-LGIKLIFVLEGKRR-VQTA 121
Query: 86 ARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALC 145
+ F TF K ++C +LL G+PV +AK E EALC
Sbjct: 122 GKRDNFRNR----------------RSGTTFWKAGEQCHDLLTRLGIPVFRAKAEGEALC 165
Query: 146 AQLNSEGYVDACITADSDAFLFGAKCV------------------VKCIRPNTKEPFECY 187
A L+ VD I+ D D LFGA+ V + +R +
Sbjct: 166 ALLSQRNIVDGVISNDGDCLLFGARVVYTKFSVENLVEGSVMRYDLGNLRALIDHAGDKE 225
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ L L R L++ +LL G+D NG+ +G A++F++ D L ++
Sbjct: 226 ASDQLTGSLSLSRFDLLSFALLTGSDLAGNGLPKVGHKKAIRFIRKCQIDNPLTT--EMA 283
Query: 248 NGDIPQYWGDIKSTEEAVSHSDESMPMIKSSH---CSFCGHPGTKRAHFKFSCEYCINDN 304
+ D ++KS A ++P ++ CS C H GTK +H K CE C
Sbjct: 284 SID------EVKSWAVAAHVRPTNLPHQTKANEKCCSRCCHIGTKHSHEKLGCEACGTAP 337
Query: 305 NEGC 308
E C
Sbjct: 338 GEPC 341
>gi|453088882|gb|EMF16922.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 1387
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+QEC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 1036 MIQECQALLRLFGLPYVTAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRIYKNMF- 1094
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E GL R+ LIA++ L+G+D+ GV G+G TAL+ + F
Sbjct: 1095 NQAKFVECYLTSDLEKEFGLTRQKLIAVANLLGSDY-TEGVPGVGPVTALEIISEF 1149
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKSR 94
>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 284
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 113/211 (53%), Gaps = 12/211 (5%)
Query: 33 SYWIVQHETAIKK---NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLA 89
S W+ Q A++ N + H+ + FFR I +G PVFV DG LK Q +
Sbjct: 7 SIWLHQFLKAMRSRDGNLLHGAHI-IGFFRRICKLLFYGILPVFVFDGATPALKRQTIAS 65
Query: 90 RFYR-STIDASTLPVAEEGILVERNQTFL----KCVQECVELLE-LFGMPVLKAKGEAEA 143
R +R +T++ S AE + ++ + L + + CV LL +FG+P + A EAE+
Sbjct: 66 RRHRRATVEQSLRKTAERILSLQLQKRALIVNWQQRKSCVPLLLFIFGIPYIVATTEAES 125
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHL 203
CA L +G V+ +T DSD F+FG + V K + T+ E Y + ++ LGL R+ L
Sbjct: 126 QCAFLQKQGLVEGIVTDDSDVFVFGGEVVYKNMFTQTRS-VEIYTMDRLQEQLGLSREKL 184
Query: 204 IAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I ++ L+G+D+ G+ GIG T+++ + +
Sbjct: 185 ILLAYLLGSDYT-PGLVGIGPVTSVEILNEW 214
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG + K +
Sbjct: 792 MVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMF- 850
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY SD+E L RK LI+ S L+G+D+ G+ GIG TAL+ + FS+
Sbjct: 851 NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDY-TEGIPGIGPVTALEILTEFSD 907
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L +R+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPILKRQ 86
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG + K +
Sbjct: 791 MVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMF- 849
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY SD+E L RK LI+ S L+G+D+ G+ GIG TAL+ + FS+
Sbjct: 850 NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDY-TEGIPGIGPVTALEILTEFSD 906
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L +R+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 887 MVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 945
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY SD++ L L R+ L++++LL+G+D+ +G+ G+G TA++ + F E E
Sbjct: 946 NSNKLVECYLSSDLDKELSLSREQLVSIALLLGSDY-TDGLPGVGPVTAVEILSEFPESE 1004
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLWFGIRPVFVFDGGAPALKRQ 86
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG + K +
Sbjct: 790 MVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMF- 848
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L RK LI+ S L+G+D+ G+ GIG TAL+ + FS
Sbjct: 849 NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDY-TEGIPGIGPVTALEILTEFS 904
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L +R+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|402083876|gb|EJT78894.1| DNA-repair protein rad13 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 80/142 (56%), Gaps = 10/142 (7%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 893 MVAECQQLLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFGGTRVYKNMF- 951
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + ECY SD+E L L R LIA++ L+G+D+ G+ GIG TA++ + F ++
Sbjct: 952 NGNKFVECYLSSDLEGDLSLGRPQLIALAQLLGSDY-TEGLPGIGPVTAVEILSEFPGED 1010
Query: 239 ILNILHKIGNGDIPQYWGDIKS 260
L ++W D++S
Sbjct: 1011 GLK--------QFAEWWHDVQS 1024
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWQVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRSSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPILK 84
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG + K +
Sbjct: 790 MVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMF- 848
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L RK LI+ S L+G+D+ G+ GIG TAL+ + FS
Sbjct: 849 NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDY-TEGIPGIGPVTALEILTEFS 904
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L +R+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 873 MVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 931
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY SD++ L L R+ L++++LL+G+D+ +G+ G+G TA++ + F E E
Sbjct: 932 NSNKLVECYLSSDLDKELSLSREQLVSIALLLGSDY-TDGLPGVGPVTAVEILSEFPESE 990
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLWFGIRPVFVFDGGAPALKRQ 86
>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
Length = 1120
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG + K +
Sbjct: 791 MVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMF- 849
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY SD+E L RK L++ S L+G+D+ G+ GIG TAL+ + FS+
Sbjct: 850 NQSKYVECYLSSDLEKEYTLDRKKLVSFSHLLGSDY-TEGIPGIGPVTALEILTEFSD 906
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L +R+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARLIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|384433639|ref|YP_005642997.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
Length = 351
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 33/267 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KP 51
MGV DL+K R L+ KRV++D + Q AI++ + P
Sbjct: 1 MGV--DLADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTS 58
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS-TLPVAE-EGIL 109
HL F+RTIN+ + G P++V DG P KS+ L R ++ +A L A+ EG +
Sbjct: 59 HLSGLFYRTINILEE-GVIPIYVFDGKPPEQKSE-ELERRRKAKEEAERKLERAKSEGKI 116
Query: 110 VE---RNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E +Q L+ V+E +LL G+P+++A E EA A LN G A + D
Sbjct: 117 EELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDY 176
Query: 163 DAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIG 211
DA LFGAK +V+ + K E + LG+ R+ LI + +LIG
Sbjct: 177 DAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG 236
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +G++GIG + AL+ ++ + + E
Sbjct: 237 TDYNPDGIRGIGPERALKIIKKYGKIE 263
>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
Length = 1130
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 799 MITECQQLLSLFGLPYIIAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF- 857
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+++ L+G+D+ G+ GIG TAL+ + FS
Sbjct: 858 NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDY-TEGISGIGPVTALEILTEFS 913
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPVLKRQ 86
>gi|407928397|gb|EKG21254.1| Xeroderma pigmentosum group G protein [Macrophomina phaseolina MS6]
Length = 1302
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 924 MIAECQQLLSLFGLPYITAPMEAEAQCAELVDLGLVDGIVTDDSDIFLFGGTRVYKNMF- 982
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + ECY D+E+ GL R+ LIA++ L+G+D+ G+ G+G TAL+ + F + E
Sbjct: 983 NQAKFVECYLSQDLESEFGLTRRKLIAIAQLLGSDY-TEGIPGVGPVTALEILSEFGDLE 1041
Query: 239 ILNILHKIGNGDIPQYWGDIKS 260
+W D++S
Sbjct: 1042 SFR-----------DWWRDVQS 1052
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I G PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLFIGIKPVFVFDGGAPALKRQTISARKSR 94
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 21/229 (9%)
Query: 23 LRDKRVAVDLSYWIVQHETAIK----------KNSVPKPHLRLTFFRTINLFAKFGAFPV 72
L++K VA+D I Q ++I+ K + P+ + F++TI L P+
Sbjct: 19 LKNKTVAIDSMNIIYQFLSSIRLRDGAPLRNSKGEITSPYNGI-FYKTIYLLNN-EITPI 76
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQECV 124
+V DG P LK + R R + +A+ +E Q + K V C
Sbjct: 77 WVFDGKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINYLEPNTVDNCK 136
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
+LL+L G+P + A E EA CA + G ++ D DA L+GA V+ I + K P
Sbjct: 137 KLLKLMGIPYIDAPSEGEAQCAHMIKNGDAYCVVSQDYDALLYGAPRTVRNITASNK-PL 195
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
E I DI L + LI M++LIG D+++ G++GIG AL ++N
Sbjct: 196 ELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIKN 244
>gi|406864117|gb|EKD17163.1| DNA excision repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1423
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 21/233 (9%)
Query: 15 ARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFV 74
A G++ ++R ++D + + S+ +P LT ++ A+F A
Sbjct: 890 ASLSGMELAAEERTSIDAEFAVEAS------TSIAQPATELTAQEQASIGAEFDALSSDD 943
Query: 75 VDGTPS---PLKSQARLARFYRSTIDASTLPVAEEGILVERNQ----------TFLKCVQ 121
+ S ++ A+ A + DA E + RNQ +
Sbjct: 944 EELMASLALEAETHAQFASTLNNRTDAENQASYERELKALRNQQKKDRRDADEVTTVMIS 1003
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC LL LFG+P + A EAEA CA+L + G VD +T D D FLFG V K + N+
Sbjct: 1004 ECQALLRLFGLPYITAPMEAEAQCAELVNLGLVDGVVTDDCDIFLFGGTRVYKNMF-NSN 1062
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ ECY SDIE L L R LIA++ L+G+D+ G+ G+G TA++ + F
Sbjct: 1063 KYVECYLASDIEKELSLSRDQLIAIAHLLGSDY-TEGLPGVGPVTAIEILSEF 1114
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W LL P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTS-LWPLLAPSARPTPLPTLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q L R R
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPVLKRQTVLRRRQR 94
>gi|115390695|ref|XP_001212852.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
gi|114193776|gb|EAU35476.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
Length = 1131
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 826 MISECQQLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF- 884
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+ + L+G+D+ G+ G+G TAL+ + FS
Sbjct: 885 NQSKFVECYLTSDLEKEYALHRRKLISFAHLLGSDY-TEGIPGVGPVTALEILTEFS 940
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G WD+++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHG-LWDVVQPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPILKRQ 86
>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 1141
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 808 MITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMF- 866
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY +D+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 867 NQSKYVECYLTADLEKEYALHRRKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFS 922
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQG-LWTIVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPVLKRQ 86
>gi|425769594|gb|EKV08085.1| DNA excision repair protein Rad2 [Penicillium digitatum Pd1]
gi|425771041|gb|EKV09495.1| DNA excision repair protein Rad2 [Penicillium digitatum PHI26]
Length = 1130
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 812 MINECQQLLALFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFGGTRVYKNMF- 870
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 871 NQSKFVECYLTSDLEKEYALHRQKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFS 926
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
FR I FG PVFV DG +K Q R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGAPVMKRQTIAGR 91
>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 127/259 (49%), Gaps = 31/259 (11%)
Query: 9 DLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFR 59
DL+K R L+ KRV++D + Q AI++ + P HL F+R
Sbjct: 2 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYR 61
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS-TLPVAE-EGILVE---RNQ 114
TIN+ + G P++V DG P KS+ L R ++ +A L A+ EG + E +Q
Sbjct: 62 TINILEE-GVIPIYVFDGKPPEQKSE-ELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 119
Query: 115 TFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
L+ V+E +LL G+P+++A E EA A LN G A + D DA LFGAK
Sbjct: 120 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 179
Query: 171 CVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
+V+ + K E + LG+ R+ LI + +LIG D++ +G+
Sbjct: 180 RLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGI 239
Query: 220 QGIGLDTALQFVQNFSEDE 238
+GIG + AL+ ++ + + E
Sbjct: 240 RGIGPERALKIIKKYGKIE 258
>gi|28380021|sp|Q980U8.2|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 127/259 (49%), Gaps = 31/259 (11%)
Query: 9 DLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFR 59
DL+K R L+ KRV++D + Q AI++ + P HL F+R
Sbjct: 5 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYR 64
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS-TLPVAE-EGILVE---RNQ 114
TIN+ + G P++V DG P KS+ L R ++ +A L A+ EG + E +Q
Sbjct: 65 TINILEE-GVIPIYVFDGKPPEQKSE-ELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 122
Query: 115 TFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
L+ V+E +LL G+P+++A E EA A LN G A + D DA LFGAK
Sbjct: 123 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 182
Query: 171 CVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
+V+ + K E + LG+ R+ LI + +LIG D++ +G+
Sbjct: 183 RLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGI 242
Query: 220 QGIGLDTALQFVQNFSEDE 238
+GIG + AL+ ++ + + E
Sbjct: 243 RGIGPERALKIIKKYGKIE 261
>gi|408388533|gb|EKJ68217.1| hypothetical protein FPSE_11684 [Fusarium pseudograminearum CS3096]
Length = 1224
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG V K +
Sbjct: 898 MITECQALLRLFGIPYVTAPMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMF- 956
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY +SDIE L L R+ LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 957 NSNKFVECYLVSDIEKELSLTREQLISLAHLLGSDY-TEGLPGVGPVTAVEILSEFPGRS 1015
Query: 239 ILN 241
LN
Sbjct: 1016 GLN 1018
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLWFGILPVFVFDGGAPVLKRQ 86
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L VD +T DSD FLFG V K +
Sbjct: 905 MVTECQALLRLFGVPYITAPMEAEAQCAELVRLNLVDGIVTDDSDTFLFGGTRVYKNMF- 963
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY + D+E L L R+ LIA++ L+G+D+ G+ GIG TA++ + F E
Sbjct: 964 NSNKFVECYLLRDLEDELELSREQLIALAQLLGSDY-TEGIPGIGPVTAVEILSEFPGRE 1022
Query: 239 ILNILHKIGNGDIPQYWGDIKS 260
G D +W D++S
Sbjct: 1023 --------GLSDFKTWWEDVQS 1036
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR + +G PVFV DG LK
Sbjct: 59 FRRLCKLLWYGVKPVFVFDGGAPALK 84
>gi|255943339|ref|XP_002562438.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587171|emb|CAP94835.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1083
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 765 MINECQQLLTLFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFGGTRVYKNMF- 823
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 824 NQSKFVECYLTSDLEKEYALHRQKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFS 879
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG +K Q R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGAPVMKRQTIAGRKKR 94
>gi|76364187|sp|Q4JAN1.2|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 133/274 (48%), Gaps = 36/274 (13%)
Query: 7 FWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTF 57
++++ R L+ ++ K++++D I Q AI++ + P HL F
Sbjct: 3 LGEIVEDVKREINLNEMKGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLF 62
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPV-----AEEGILVER 112
+RTI++ G P+FV DG P P K + R R+ +A E + +
Sbjct: 63 YRTISIIES-GIIPIFVFDGKP-PEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKY 120
Query: 113 NQTFLKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
Q ++ E VE LL+ G+PV++A GE EA A +NS A + D D+ LFG
Sbjct: 121 AQAAVRLSNEMVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFG 180
Query: 169 AKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN 217
AK +V+ I + K E + + LG+ R+ LI +++LIG D++ +
Sbjct: 181 AKRLVRNITISGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPD 240
Query: 218 GVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI 251
GV+GIG+ TAL+ ++ ++ NI + I G+I
Sbjct: 241 GVKGIGVKTALRIIKKYN-----NIENAIEKGEI 269
>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
Length = 1143
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL+LFG+P + A EAEA CA+L S G VD +T DSD FLFG + K +
Sbjct: 816 MVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMF- 874
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L RK LI+ + L+G+D+ G+ GIG TAL+ + F
Sbjct: 875 NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDY-TEGIPGIGPVTALEILTEF 929
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPALKRQ 86
>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1143
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL+LFG+P + A EAEA CA+L S G VD +T DSD FLFG + K +
Sbjct: 816 MVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMF- 874
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L RK LI+ + L+G+D+ G+ GIG TAL+ + F
Sbjct: 875 NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDY-TEGIPGIGPVTALEILTEF 929
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPALKRQ 86
>gi|83766314|dbj|BAE56457.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1066
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD IT DSD FLFG V K +
Sbjct: 806 MISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFGGTRVYKNMF- 864
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 865 NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFS 920
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHG-LWTVLQPCARPIKVETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|391869945|gb|EIT79134.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 1066
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD IT DSD FLFG V K +
Sbjct: 806 MISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFGGTRVYKNMF- 864
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 865 NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFS 920
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHG-LWTVLQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|238484915|ref|XP_002373696.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
gi|220701746|gb|EED58084.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
Length = 1135
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD IT DSD FLFG V K +
Sbjct: 806 MISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFGGTRVYKNMF- 864
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 865 NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFS 920
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHG-LWTVLQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|317140876|ref|XP_001818459.2| single-stranded DNA endonuclease [Aspergillus oryzae RIB40]
Length = 1135
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD IT DSD FLFG V K +
Sbjct: 806 MISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFGGTRVYKNMF- 864
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + FS
Sbjct: 865 NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDY-TEGIPGIGPVTALEILTEFS 920
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHG-LWTVLQPCARPIKVETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPILKRQ 86
>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
gi|392867161|gb|EAS29637.2| DNA excision repair protein (rad2) [Coccidioides immitis RS]
Length = 1142
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL+LFG+P + A EAEA CA+L S G VD +T DSD FLFG + K +
Sbjct: 815 MVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMF- 873
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L RK LI+ + L+G+D+ G+ GIG TAL+ + F
Sbjct: 874 NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDY-TEGIPGIGPVTALEILTEF 928
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W ++KP AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVT-DLWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPALKRQ 86
>gi|190346361|gb|EDK38425.2| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 5/125 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T ++ VQE LL+ FG+P + A EAEA CA+L G VD IT DSD FLFG +
Sbjct: 770 EVTETMIRDVQE---LLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQ 826
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K + N K+ ECY I +I +GL +K+LI ++LL+G+D+ G++GIG A++
Sbjct: 827 KVYKNMF-NQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDY-TEGIKGIGPVMAVEI 884
Query: 231 VQNFS 235
+ FS
Sbjct: 885 LAEFS 889
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ NS+P+ H+ + F
Sbjct: 1 MGVNS-LWDIVGPTARPVRLESLSRKKLAVDASIWIYQFLKAVRDSDGNSLPQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q L R R
Sbjct: 59 FRRICKLLYFGILPVFVFDGGAPALKRQTILKRRER 94
>gi|226289636|gb|EEH45120.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb18]
Length = 1178
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 847 MVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 905
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI + L+G+D+ G+ G+G TAL+ + FS
Sbjct: 906 NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDY-TEGIPGVGPVTALEILTEFS 961
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPTLKRQTITARKKR 94
>gi|146417652|ref|XP_001484794.1| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 5/125 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T ++ VQE LL+ FG+P + A EAEA CA+L G VD IT DSD FLFG +
Sbjct: 770 EVTETMIRDVQE---LLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQ 826
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K + N K+ ECY I +I +GL +K+LI ++LL+G+D+ G++GIG A++
Sbjct: 827 KVYKNMF-NQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDY-TEGIKGIGPVMAVEI 884
Query: 231 VQNFS 235
+ FS
Sbjct: 885 LAEFS 889
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ NS+P+ H+ + F
Sbjct: 1 MGVNS-LWDIVGPTARPVRLESLSRKKLAVDASIWIYQFLKAVRDSDGNSLPQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q L R R
Sbjct: 59 FRRICKLLYFGILPVFVFDGGAPALKRQTILKRRER 94
>gi|427797693|gb|JAA64298.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 856
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 79/128 (61%), Gaps = 4/128 (3%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI-RP 178
V+EC ELL L G P + + GEAEA CA L G +T DSDA+LFGA+C+ + + RP
Sbjct: 587 VKECQELLALLGQPYVVSPGEAEAQCAWLEQHGLSQGVVTDDSDAWLFGAQCIYRHLFRP 646
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ + P + + D+ + GL R+ ++A +LL G+D+ GV G+G TA++ + F D+
Sbjct: 647 D-RRPMR-FLMKDLASQFGLDRQKMVAFALLCGSDY-TTGVNGVGPVTAMEVLSEFKGDD 703
Query: 239 ILNILHKI 246
+++L +
Sbjct: 704 AVSLLEEF 711
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++ + L+ L +K +AVD+S W+ Q + + V HL L
Sbjct: 4 MGVHG-LWQVVEAAGKPIALETLENKVLAVDVSLWLHQAVKGFRDAQGSPVANAHL-LGL 61
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTI 96
+ + +G PVFV DG LK Q AR R T
Sbjct: 62 LQRVCKLLFYGVKPVFVFDGGVPQLKKQTLAARQERRTT 100
>gi|295662156|ref|XP_002791632.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279758|gb|EEH35324.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1178
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 847 MVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 905
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + ECY SD+E L R+ LI + L+G+D+ G+ G+G TAL+ + FS
Sbjct: 906 NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDY-TEGIPGVGPVTALEILTEFS 961
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPALKRQTITARKKR 94
>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
Length = 380
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V+DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVLDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|448530440|ref|XP_003870064.1| Rad2 protein [Candida orthopsilosis Co 90-125]
gi|380354418|emb|CCG23933.1| Rad2 protein [Candida orthopsilosis]
Length = 995
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 93/162 (57%), Gaps = 14/162 (8%)
Query: 82 LKSQARLA-RFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQECVELLELFGM 132
LKSQ +L+ F S+I+ + EE +L E+ Q + + + ELL+ FG+
Sbjct: 690 LKSQIKLSHEFPMSSIETR---ITEEQLLQEKLQKAKRDSDEVTENMISDVQELLKRFGI 746
Query: 133 PVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDI 192
P + A EAEA CA+L G VD IT DSD FLFG + K + N K+ ECY DI
Sbjct: 747 PYITAPMEAEAQCAELFRIGLVDGIITDDSDCFLFGGDRIYKNMF-NQKQFVECYFKDDI 805
Query: 193 EAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E +GL R++LI +++L+G+D+ G++GIG A++ + F
Sbjct: 806 EDRIGLSRENLIELAILLGSDY-TQGIKGIGPVLAVEILAEF 846
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ N++P+ H+ + F
Sbjct: 1 MGVQS-LWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALPQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQTF 116
FR I FG P+FV DG LK Q R R ++ ST A++ + ++
Sbjct: 59 FRRICKLLYFGIQPIFVFDGGVPVLKRQTINERKNRRQQNSESTRETAQKLLAIQ----L 114
Query: 117 LKCVQECVE 125
+ V+E VE
Sbjct: 115 QRQVEESVE 123
>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
gi|150421551|sp|Q9YFY5.3|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
Length = 350
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 136/283 (48%), Gaps = 35/283 (12%)
Query: 3 VGGKFWDLLKPYARFE-GLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPH 52
+G +L+ P AR E L L +A+D + Q TAI++ + P H
Sbjct: 1 MGVNLRELIPPEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSH 60
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLAR------FYRSTIDASTLPV 103
L F+RTINL + G PV+V DG P +KS + RL R YR ++A +
Sbjct: 61 LSGLFYRTINLVEE-GIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEE 119
Query: 104 AEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
A + ++ T V+E ELL+ GMP ++A E EA A + +G A + D D
Sbjct: 120 ARKYAMMAARLTS-DMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYD 178
Query: 164 AFLFGAKCVVK--CIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIGN 212
+ LFG+ +V+ I K P E + + + LG+ R+ LIA+ +L+G
Sbjct: 179 SLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGT 238
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI-PQY 254
D++ GV+G G TAL+ V++ + + +L + G+ P Y
Sbjct: 239 DYNPGGVRGYGPKTALRLVKSLGDP--MKVLASVPRGEYDPDY 279
>gi|126344550|ref|XP_001362314.1| PREDICTED: flap endonuclease 1-like [Monodelphis domestica]
Length = 380
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRHGGDMLQNEEGEATSHLVGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A + E F K + EC +LL L
Sbjct: 88 KPPQLKSGELAKRGERRAEAERQLQQALDAGAQEEADKFSKRLVKVTKEHNDECKQLLRL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L+A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLEAPGEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+S + GLGL ++ + + +L+G+D+ ++GIG A+ +Q I I+ K+
Sbjct: 208 HLSRVLQGLGLTQEQFVDLCILLGSDY-CESIRGIGPKRAIDLIQQHK--SIEEIIRKLD 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 PSKYPVPENW 274
>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 128/265 (48%), Gaps = 31/265 (11%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHL 53
+G DL+K R L+ K+V++D + Q AI++ + P HL
Sbjct: 1 MGVDLADLVKDVKRELSFSELKGKKVSIDGYNALYQFLAAIRQPDGTPLMDSHGRITSHL 60
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILVE- 111
F+RTIN+ + G P++V DG P KS+ R + + EG + E
Sbjct: 61 SGLFYRTINILEE-GVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEEL 119
Query: 112 --RNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+Q L+ V+E LL G+P+++A E EA A LN G+ A + D D+
Sbjct: 120 RKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSI 179
Query: 166 LFGAKCVVK--CIRPNTKEPFECYCISDIE----------AGLGLKRKHLIAMSLLIGND 213
LFGAK +V+ I K P + I DI+ LG+ R+ LI +S+LIG D
Sbjct: 180 LFGAKRLVRNLTITGKRKLPNKDVYI-DIKPELIETELLLKKLGITREQLIDISILIGTD 238
Query: 214 HDLNGVQGIGLDTALQFVQNFSEDE 238
++ +G++GIG + AL+ ++ + + E
Sbjct: 239 YNPDGIKGIGPERALKIIKKYGKIE 263
>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
Length = 380
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GVKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
gi|449066790|ref|YP_007433872.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449069063|ref|YP_007436144.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035298|gb|AGE70724.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449037571|gb|AGE72996.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
Length = 331
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 36/258 (13%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAFPVF 73
++ K++++D I Q AI++ + P HL F+RTI++ G P+F
Sbjct: 1 MKGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIES-GIIPIF 59
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPV-----AEEGILVERNQTFLKCVQECVE--- 125
V DG P P K + R R+ +A E + + Q ++ E VE
Sbjct: 60 VFDGKP-PEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKYAQAAVRLSNEMVEESK 118
Query: 126 -LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
LL+ G+PV++A GE EA A +NS A + D D+ LFGAK +V+ I + K
Sbjct: 119 KLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITISGKRKL 178
Query: 185 -----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
E + + LG+ R+ LI +++LIG D++ +GV+GIG+ TAL+ ++
Sbjct: 179 PNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTALRIIKK 238
Query: 234 FSEDEILNILHKIGNGDI 251
++ NI + I G+I
Sbjct: 239 YN-----NIENAIEKGEI 251
>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 401
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 136/283 (48%), Gaps = 35/283 (12%)
Query: 3 VGGKFWDLLKPYARFE-GLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPH 52
+G +L+ P AR E L L +A+D + Q TAI++ + P H
Sbjct: 52 LGVNLRELIPPEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLMDREGRVTSH 111
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLAR------FYRSTIDASTLPV 103
L F+RTINL + G PV+V DG P +KS + RL R YR ++A +
Sbjct: 112 LSGLFYRTINLVEE-GIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRAVEAGEVEE 170
Query: 104 AEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
A + ++ T V+E ELL+ GMP ++A E EA A + +G A + D D
Sbjct: 171 ARKYAMMAARLTS-DMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYD 229
Query: 164 AFLFGAKCVVK--CIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIGN 212
+ LFG+ +V+ I K P E + + + LG+ R+ LIA+ +L+G
Sbjct: 230 SLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELETLLSKLGITREQLIAVGILLGT 289
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI-PQY 254
D++ GV+G G TAL+ V++ + + +L + G+ P Y
Sbjct: 290 DYNPGGVRGYGPKTALRLVKSLGDP--MKVLASVPRGEYDPDY 330
>gi|225682262|gb|EEH20546.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb03]
Length = 1233
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K + N
Sbjct: 903 VSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFGGTRVYKNMF-N 961
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ ECY SD+E L R+ LI + L+G+D+ G+ G+G TAL+ + FS
Sbjct: 962 QVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDY-TEGIPGVGPVTALEILTEFS 1016
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 7 FWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTFFRTINL 63
W ++KP AR L+ L KR+AVD S WI Q A++ N++ H+ + FFR I
Sbjct: 61 LWTVVKPCARPIKLETLNGKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGFFRRICK 119
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FG PVFV DG LK Q AR R
Sbjct: 120 LLYFGIKPVFVFDGGAPTLKRQTITARKKR 149
>gi|361129990|gb|EHL01866.1| putative DNA repair protein rad13 [Glarea lozoyensis 74030]
Length = 1157
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
QEC LL+ FG+P + A GEAEA CA+L +G VD IT D D FLFG V K + N+
Sbjct: 782 QECQILLKKFGIPYIIAPGEAEAQCAELVRQGLVDGAITDDCDIFLFGGTRVYKNLF-NS 840
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ ECY DIE L L R +I+++ L+G+D+ G+ G+G TA++ + FS
Sbjct: 841 NKDVECYLQKDIEQELSLGRDQMISLAQLLGSDY-AEGLHGVGSVTAIELLSEFS 894
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum NZE10]
Length = 1395
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+QEC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 1023 MIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRIYKNMF- 1081
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L R LIA++ L+G+D+ +G+ GIG TAL+ + F
Sbjct: 1082 NQAKFVECYLTSDLEKEFDLTRDKLIAVAHLLGSDY-TDGIPGIGPVTALEIISEF 1136
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L +R+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWQILQPCARPTKIETLNRRRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKAR 94
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 873 MVTECQALLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 931
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY D+E L L R+ LIA++ L+G+D+ G+ G+G TAL+ + F
Sbjct: 932 NSNKYVECYLAKDLETELSLSREQLIALAQLLGSDY-TEGLPGVGPVTALEILSEFP--- 987
Query: 239 ILNILHKIGNGDIPQYWGDIKS 260
+ G + +W D+++
Sbjct: 988 -----GRDGLAEFRDWWQDVQN 1004
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQG-LWTIVQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I G PVFV DG LK
Sbjct: 59 FRRICKLLWHGVKPVFVFDGGAPALK 84
>gi|345571348|gb|EGX54162.1| hypothetical protein AOL_s00004g195 [Arthrobotrys oligospora ATCC
24927]
Length = 1248
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 9/142 (6%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL++FG+P + A EAEA CA+L + G VD +T DSD FLFG V K +
Sbjct: 870 MITECQQLLQMFGIPYITAPMEAEAQCAELVNLGLVDGIVTDDSDIFLFGGTRVYKNMF- 928
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + ECY SD+E L RK +I ++ L+G+D+ G+ G+G TAL+ + NF +
Sbjct: 929 NQAKYVECYLASDLENEYSLDRKKMIRLAHLLGSDY-TEGLVGVGPVTALEVLANFGGGD 987
Query: 239 ILNILHKIGNGDIPQYWGDIKS 260
+ LH D +W I+S
Sbjct: 988 --DALH-----DFKAWWTRIQS 1002
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPVARPVKLETLAQKRLAIDASIWIYQFLKAVRDKEGNALRNAHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I G PVFV DG LK Q
Sbjct: 59 FRRIVKLLFHGIRPVFVFDGGAPLLKRQ 86
>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
pallidum PN500]
Length = 1515
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC +LL LFG+P + + EAEA CA+L + G +D +T DSD LFG + R
Sbjct: 1002 ILRECHDLLSLFGIPFITSPTEAEAQCAELFALGLIDGVVTEDSDTLLFGKSSDMVVYRH 1061
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
++P E YC+SDIE +G+ R LI +++L+G D+ GV+GIG+ A++ + F
Sbjct: 1062 LFQQP-EKYCMSDIEKTIGVNRDDLINLAMLLGCDY-TAGVKGIGIVNAMEIISEF 1115
>gi|443703547|gb|ELU01026.1| hypothetical protein CAPTEDRAFT_17841 [Capitella teleta]
Length = 464
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 112/245 (45%), Gaps = 20/245 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R L+ L K +AVD+S W+ Q ++ N VP HL +
Sbjct: 1 MGVHG-LWHLLQSTGRPVTLESLEGKVLAVDVSMWMHQLMKGMRDSHGNPVPNAHLIGLY 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTID-ASTLPVAEEGILVERNQTF 116
R L + PVFV DG LK Q ID L V + RNQ
Sbjct: 60 HRICKLLY-YRIKPVFVFDGGVPALKKQT-----TDELIDLQKVLEVENTELHNTRNQQD 113
Query: 117 LKCVQ-------ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA 169
E EL+ LFG+P + + EAEA CA L+ + +T DSD +LFG
Sbjct: 114 RMATSLTEQMNIEAQELVRLFGLPYVVSPMEAEAQCAFLDLTSQTNGTVTDDSDIWLFGG 173
Query: 170 KCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+ V K + N+K E + D E L L R+ L+ M+L+ G+D+ G+ G A++
Sbjct: 174 RNVYKNLF-NSKRHVEWFRFEDFEKQLFLTREKLVNMALVCGSDY-TPGIHNAGPVAAME 231
Query: 230 FVQNF 234
+ F
Sbjct: 232 IMGEF 236
>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
Length = 1100
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 118/298 (39%), Gaps = 79/298 (26%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 769 MITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMF- 827
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + ECY +D+E L R LI ++ L+G+D+ G+ GIG TAL+ + F E
Sbjct: 828 NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDY-TEGIPGIGPVTALEILTEFGTLE 886
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
D +W +++ + M SH +F
Sbjct: 887 -----------DFRDWWTQVQT----------GLNMGNDSHATFY--------------- 910
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
K+ KKH +KI L +FP+ +
Sbjct: 911 ------------------------------KKFKKH-------ATKIFLPPSFPDPRVDA 933
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
YL +D WG P L DFL+ W + ++P++ + R+
Sbjct: 934 AYLEPE----VDSDPSPFQWGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRD 987
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++ P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQG-LWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIQPVFVFDGGAPVLKRQT 87
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 116/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGSNLMNEDGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P +KS R R L AEE E + F + + +EC ELL+
Sbjct: 88 KPPDMKSGELAKRKERREEAQKQLEKAEEAGDEENIEKFNRRLVKVSKQHNEECKELLKY 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A GEAEA CA L G V A T D DA FG +++ + K P + Y
Sbjct: 148 MGIPFINAPGEAEAQCAALVKAGKVYATGTEDMDALTFGTTVLLRNLTVAEARKLPIKEY 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
+ + LGL + I + +L+G D+ + ++GIG A+ + Q+ + DEIL L
Sbjct: 208 YYNRVLEELGLTKDEFIDLCILLGCDY-CDSIRGIGPKRAIDLIKQHKTIDEILKHLDS- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 KKYTVPEDW 274
>gi|396470540|ref|XP_003838668.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
gi|312215236|emb|CBX95189.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
Length = 1312
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 972 MITECQHLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMF- 1030
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-D 237
N + ECY SD+ + L R LIA++ L+G+D+ G+ GIG TAL+ + F + +
Sbjct: 1031 NAAKFVECYLASDLASEFSLTRDKLIAIAQLLGSDY-TPGIPGIGPVTALEILSEFPDLE 1089
Query: 238 EILNILHKIGNGDIPQ 253
+ + +G IP+
Sbjct: 1090 QFKQWWTGVQDGSIPK 1105
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I G PVFV DG LK Q
Sbjct: 59 FRRICKLLFIGIKPVFVFDGGAPALKRQ 86
>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
musculus]
Length = 432
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 81 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 139
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 140 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSL 199
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 200 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 259
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 260 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 317
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 318 SKYPVPENW 326
>gi|26345786|dbj|BAC36544.1| unnamed protein product [Mus musculus]
Length = 411
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|452987544|gb|EME87299.1| hypothetical protein MYCFIDRAFT_147956 [Pseudocercospora fijiensis
CIRAD86]
Length = 1298
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+QEC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 938 MIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRVYKNMF- 996
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY SD+E L R+ LI+++ L+G+D+ G+ G+G TAL+ + F +
Sbjct: 997 NQAKFVECYLTSDLEKEFDLTREKLISIAQLLGSDY-TEGLHGVGAVTALEIISEFPD 1053
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKAR 94
>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
musculus]
Length = 396
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 45 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 103
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 104 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSL 163
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 164 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 223
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 224 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 281
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 282 SKYPVPENW 290
>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
gi|410025484|ref|NP_001258543.1| flap endonuclease 1 [Mus musculus]
gi|410025486|ref|NP_001258544.1| flap endonuclease 1 [Mus musculus]
gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
musculus]
Length = 380
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|350632743|gb|EHA21110.1| hypothetical protein ASPNIDRAFT_45646 [Aspergillus niger ATCC 1015]
Length = 1130
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 118/298 (39%), Gaps = 79/298 (26%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 799 MITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMF- 857
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + ECY +D+E L R LI ++ L+G+D+ G+ GIG TAL+ + F E
Sbjct: 858 NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDY-TEGIPGIGPVTALEILTEFGTLE 916
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
D +W +++ + M SH +F
Sbjct: 917 -----------DFRDWWTQVQT----------GLNMGNDSHATFY--------------- 940
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
K+ KKH +KI L +FP+ +
Sbjct: 941 ------------------------------KKFKKH-------ATKIFLPPSFPDPRVDA 963
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
YL +D WG P L DFL+ W + ++P++ + R+
Sbjct: 964 AYLEPE----VDSDPSPFQWGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRD 1017
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++ P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQG-LWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIQPVFVFDGGAPVLKRQT 87
>gi|440633177|gb|ELR03096.1| hypothetical protein GMDG_05935 [Geomyces destructans 20631-21]
Length = 1232
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L + G VD IT DSD FLFG V K +
Sbjct: 882 MVTECQALLRLFGLPYITAPMEAEAQCAELVTLGLVDGIITDDSDVFLFGGTRVYKNMF- 940
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY SD+E L L R LI + L+G+D+ G+ GIG TAL+ + F
Sbjct: 941 NSNKFVECYLASDLEKELSLPRDKLIEFAHLLGSDY-TEGLPGIGPVTALEIISEF 995
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV + W +L P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVT-QLWSVLHPCARPTKLEALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
FR I FG PVFV DG LK Q L R
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPVLKRQTILGR 91
>gi|393220967|gb|EJD06452.1| PIN domain-like protein, partial [Fomitiporia mediterranea MF3/22]
Length = 1250
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + + +L LFG+P + A EAEA CA L G VD IT DSD FLFGAK V K +
Sbjct: 819 MIAQIMTMLRLFGIPYITAPMEAEAQCAALVDLGLVDGVITDDSDVFLFGAKRVYKNMF- 877
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + EC+ ++D+ LGL R LI ++ L+G+D+ L G+ G+G A++ +Q F D+
Sbjct: 878 NQSKTVECFLLTDLARELGLDRGTLIRLAYLLGSDYTL-GLPGVGPVVAMELLQEFPGDD 936
Query: 239 ILN 241
L+
Sbjct: 937 GLH 939
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W LL P R L+ K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVKS-LWSLLSPAGRPVMLETAEGKSMAIDSSIWIYQFQATMRDKEGRGLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I +G PVFV DG LK
Sbjct: 59 LRRICKLLFYGIKPVFVFDGGAPALK 84
>gi|134057863|emb|CAK38230.1| unnamed protein product [Aspergillus niger]
Length = 916
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 118/298 (39%), Gaps = 79/298 (26%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 585 MITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMF- 643
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + ECY +D+E L R LI ++ L+G+D+ G+ GIG TAL+ + F E
Sbjct: 644 NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDY-TEGIPGIGPVTALEILTEFGTLE 702
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
D +W +++ + M SH +F
Sbjct: 703 -----------DFRDWWTQVQT----------GLNMGNDSHATFY--------------- 726
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
K+ KKH +KI L +FP+ +
Sbjct: 727 ------------------------------KKFKKH-------ATKIFLPPSFPDPRVDA 749
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
YL +D WG P L DFL+ W + ++P++ + R+
Sbjct: 750 AYLEPE----VDSDPSPFQWGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRD 803
>gi|347833577|emb|CCD49274.1| similar to DNA excision repair protein [Botryotinia fuckeliana]
Length = 1341
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 933 MITECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRVYKNLF- 991
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY SD+E L L R+ LI+++ L+G+D+ G+ GIG TA++ + F
Sbjct: 992 NSNKLVECYLSSDLEKELSLSREQLISIAHLLGSDY-TEGIPGIGPVTAVEILSEF 1046
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTIVQPCARPTPLPALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARL 88
FR I G PVFV DG LK Q L
Sbjct: 59 FRRICKLLFHGIKPVFVFDGGAPILKRQTVL 89
>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
Length = 1166
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 838 MVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 896
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
NT + ECY +D+E L R LI + L+G+D+ G+ G+G TAL+ + F
Sbjct: 897 NTVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDY-TEGIPGVGPVTALEILTEF 951
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F+ I FG PVFV DG LK Q ++R R
Sbjct: 59 FQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQR 94
>gi|388583607|gb|EIM23908.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 1046
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
++ E +LL FG+P + A EAEA CA+L VDA IT DSD FLFGA V K +
Sbjct: 719 MQMTGEIQKLLRAFGIPYITAPMEAEAQCAKLAQMNLVDAVITDDSDVFLFGAPIVYKNM 778
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N ++ ECY SDIE L L R LI ++ ++G+D+ NG G+G A++ + +F+
Sbjct: 779 F-NDRQFVECYVSSDIERDLSLSRDRLIELAHILGSDY-TNGFPGVGPVMAMELLADFAH 836
Query: 237 DEIL 240
+ L
Sbjct: 837 ENTL 840
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+P AR L+ L KRVA+D S W+ AIK +++ H+ L F
Sbjct: 1 MGVKG-LWQLLQPVARPVKLEMLGGKRVAIDSSIWLYHFLRAIKDKQGHTLTNAHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I +G PVFV DG LK
Sbjct: 59 LRRILKLLFYGLKPVFVFDGGAPRLK 84
>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
18188]
Length = 1166
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 838 MVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 896
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
NT + ECY +D+E L R LI + L+G+D+ G+ G+G TAL+ + F
Sbjct: 897 NTVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDY-TEGIPGVGPVTALEILTEF 951
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F+ I FG PVFV DG LK Q ++R R
Sbjct: 59 FQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQR 94
>gi|342878276|gb|EGU79631.1| hypothetical protein FOXB_09914 [Fusarium oxysporum Fo5176]
Length = 1260
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 907 MITECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 965
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY + DIE L L R+ LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 966 NSNKFVECYLVGDIEKELSLSREQLISLAHLLGSDY-TEGLPGVGPVTAVEILSEF 1020
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPILKRQ 86
>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
Length = 1128
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 800 MVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 858
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
NT + ECY +D+E L R LI + L+G+D+ G+ G+G TAL+ + F
Sbjct: 859 NTVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDY-TEGIPGVGPVTALEILTEF 913
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F+ I FG PVFV DG LK Q ++R R
Sbjct: 59 FQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQR 94
>gi|378725893|gb|EHY52352.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 1319
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
VQEC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 989 MVQECQALLRLFGLPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRIYKNMF- 1047
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L R+ LI+ + L+G+D+ G+ GIG TAL+ + +F
Sbjct: 1048 NAAKFVECYLASDLEKEFLLDRRRLISFAHLLGSDY-TEGIPGIGPVTALEILTDF 1102
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++ P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVAPTARPTQLASLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I +G PVFV DG LK +
Sbjct: 59 FRRICKLLYYGIKPVFVFDGGAPILKRE 86
>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
Length = 380
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV++ DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYIFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E + F K + EC LL L
Sbjct: 88 KPPQLKSAQLAKRSERRAEAEKQLQQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ V+GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESVRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|403347306|gb|EJY73073.1| hypothetical protein OXYTRI_05797 [Oxytricha trifallax]
Length = 1055
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 127/290 (43%), Gaps = 65/290 (22%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
QE LL L G+P ++A EAE+ CA L G VD +T DSD LFGA+ V + I
Sbjct: 755 TQELKTLLRLCGIPFVQAPFEAESQCAFLEINGLVDGVVTEDSDVLLFGARKVYRNIFDR 814
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
K E Y + IE +GL R LI M+L +G+D+ + GV+GI A++ + +F DE
Sbjct: 815 NKFA-EKYDMKIIEREMGLDRDDLIKMALFMGSDYTM-GVRGIAAVNAIEIINSFQGDEG 872
Query: 240 LNILHKIGNGDIPQYWGDIKS--TEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSC 297
L + W DIK ++A SDE+ + KS +
Sbjct: 873 LEKFKQ---------WVDIKQQIQDQAQKDSDEAGIVKKSQKQKLIE-----------AL 912
Query: 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENW---WIKVCSKIALETNFPND 354
E + D ++ ++P+ + K KE KH+NW W +FP++
Sbjct: 913 ENALTDEDK---ERPE------TEIEKEYKE----KHKNWRRHW-------EFPQDFPSN 952
Query: 355 EIVTMYLCENNGTFTATDGPSI-------SWGSPMTEMLVDFLVYHQPWQ 397
E++ Y PSI +WG+P + L F + W+
Sbjct: 953 EVIKAY-----------KDPSIDDSKEKFTWGTPAFQELKSFAIMKLGWE 991
>gi|308810128|ref|XP_003082373.1| 5'-3' exonuclease (ISS) [Ostreococcus tauri]
gi|116060841|emb|CAL57319.1| 5'-3' exonuclease (ISS), partial [Ostreococcus tauri]
Length = 987
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 120/289 (41%), Gaps = 54/289 (18%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++ ELL LFG+P + A EAEA CA LN + VDA IT DSD FLFGA V + +
Sbjct: 625 RDVQELLTLFGIPYIIAPQEAEAQCAYLNEQKLVDAVITDDSDVFLFGASLVYRNFFQDK 684
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
K E Y I +GL R I ++LL+G+D+ GV GIG+ AL+ V F D
Sbjct: 685 KY-CEVYSADRIRKDIGLDRNRFIQLALLLGSDY-TEGVSGIGIVNALEIVSAFRGD--- 739
Query: 241 NILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYC 300
I + W D+ EE D +P S GT+++
Sbjct: 740 ----VIEASKAFKEWVDL---EELTMVPDHLLPNPSPSKSKNISDDGTEQS--------- 783
Query: 301 INDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMY 360
+ KEK + ++W + NFP+ E+V Y
Sbjct: 784 ---------------------LAEAFKEKHRSLKKSWDVP--------ENFPSIEVVKAY 814
Query: 361 LCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPML 409
N + ++ P WG P ++L + V + W Q + PM+
Sbjct: 815 ---QNPSVDRSEEP-FEWGKPDVDLLRLYCVKNFAWTRDATDQVLEPMM 859
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + +L LFG+P + A EAEA CA+L S G VD IT DSD FLFGA+ V K +
Sbjct: 752 QMISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMF 811
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + E + +SD+E LGL R L+ ++ L+G+D+ +G+ G+G A++ ++ F
Sbjct: 812 -NQSKTVELFLLSDLERELGLDRDTLVRLAYLLGSDY-TDGLSGVGPVVAMELLKEFPNK 869
Query: 238 EILN 241
E L+
Sbjct: 870 EGLH 873
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W LL P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVKS-LWTLLTPVGRPILLETVEGKTMAIDSSIWIYQFQATMRDKEGRGLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLA 89
R I +G PVFV DG +P+ +A L+
Sbjct: 59 LRRITKLLFYGIKPVFVFDGG-APVIKRATLS 89
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + +L LFG+P + A EAEA CA+L S G VD IT DSD FLFGA+ V K +
Sbjct: 784 QMISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMF 843
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + E + +SD+E LGL R L+ ++ L+G+D+ +G+ G+G A++ ++ F
Sbjct: 844 -NQSKTVELFLLSDLERELGLDRDTLVRLAYLLGSDY-TDGLSGVGPVVAMELLKEFPNK 901
Query: 238 EILN 241
E L+
Sbjct: 902 EGLH 905
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W LL P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVKS-LWTLLTPVGRPILLETVEGKTMAIDSSIWIYQFQATMRDKEGRGLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLA 89
R I +G PVFV DG +P+ +A L+
Sbjct: 59 LRRITKLLFYGIKPVFVFDGG-APVIKRATLS 89
>gi|310790037|gb|EFQ25570.1| DNA excision repair protein [Glomerella graminicola M1.001]
Length = 1271
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 935 MVTECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDCFLFGGTRIYKNMF- 993
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY SD+E L L R+ LIA++ L+G+D+ G+ G+G TA++ + F +
Sbjct: 994 NSNKFVECYLSSDLEKELSLSREQLIAIAQLLGSDY-TEGLPGVGPVTAVEILSEFPGKD 1052
Query: 239 ILNILHKIGNGDIPQYWGDIK 259
L+ ++W D++
Sbjct: 1053 GLDRFK--------EWWQDVQ 1065
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q R R
Sbjct: 59 FRRICKLLWFGIKPVFVFDGGAPALKRQTIQGRKQR 94
>gi|302927330|ref|XP_003054474.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
gi|256735415|gb|EEU48761.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
Length = 1192
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 95/193 (49%), Gaps = 16/193 (8%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 867 MITECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFGGTRVYKNMF- 925
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY D+E L L R+ LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 926 NSNKFVECYLGGDLEKELSLSREQLISLAQLLGSDY-TEGLPGVGPVTAVEILSEFP--- 981
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIK----SSHCSFCGHPG-TKRAHF 293
K G D +W +++S +D S P K S PG A F
Sbjct: 982 -----GKSGLEDFRDWWKEVQSQSRP-KEADASSPFRKKFRRSQGTKLFLPPGFPSPAVF 1035
Query: 294 KFSCEYCINDNNE 306
++D+NE
Sbjct: 1036 DAYLNPEVDDSNE 1048
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPVLKRQ 86
>gi|429853644|gb|ELA28704.1| DNA excision repair protein rad2 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1240
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 907 MVTECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVYKNMF- 965
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY SD+E L L R LIA++ L+G+D+ G+ G+G TA++ + F
Sbjct: 966 NSNKFVECYLGSDLEKELSLSRDQLIAIAQLLGSDY-TEGLPGVGPVTAVEILSEF 1020
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLWFGIKPVFVFDGGAPVLKRQ 86
>gi|449543076|gb|EMD34053.1| hypothetical protein CERSUDRAFT_107818 [Ceriporiopsis subvermispora
B]
Length = 1202
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 10/143 (6%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ V + + +L LFG+P + A EAEA CA+L + G VD IT DSD FLFG + V+K +
Sbjct: 815 QMVSQIMVMLRLFGIPYITAPMEAEAQCAELLTLGLVDGIITDDSDVFLFGGQRVLKNMF 874
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + ECY + D++ LGL R LI ++ L+G+D+ G+ G+G A++ + F
Sbjct: 875 -NQSKTVECYLLPDLDRELGLDRDKLIRLAYLLGSDY-TEGLPGVGPVVAMELLTEFPG- 931
Query: 238 EILNILHKIGNGDIPQYWGDIKS 260
L+ LHK + +W ++S
Sbjct: 932 --LDGLHKFKD-----WWQRVQS 947
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W LL P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVKS-LWSLLDPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR-FYRSTIDASTLPVAEEGILVERNQTF 116
R I+ +G PVFV DG LK R +S AS VAE + + +
Sbjct: 59 LRRISKLLFYGIKPVFVFDGGAPALKRSTIAERKSKKSGAAASHAKVAERLLAAQMRREA 118
Query: 117 LKCVQECVE 125
L Q+ +E
Sbjct: 119 LNHAQKSLE 127
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 126/273 (46%), Gaps = 43/273 (15%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KP 51
MGV D+LK Y R D LR R A D + + Q T I++ + P
Sbjct: 1 MGVA--IRDILKEYKRPAEWDCLRG-RAAFDGNNALYQFLTTIRQPDGTPLMDSEGRVTS 57
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK-------------SQARLARFYRSTIDA 98
HL FFR N K G PVF+ DG P K ++A L ++ +
Sbjct: 58 HLSGLFFRLTNFIEK-GVSPVFIFDGKPPEFKNRTISERRAAKEQAEAGLKEALKAGDNQ 116
Query: 99 STLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACI 158
+ A V+R + + LL L G+P L A E EA A + SEG VD +
Sbjct: 117 AAFSYARSSTRVDR-----EIIDSSKRLLSLMGIPYLDAPSEGEAQAAFMVSEGIVDYSV 171
Query: 159 TADSDAFLFGAKCVVKCI----------RPNTKEPFECYCISDIEAGLGLKRKHLIAMSL 208
+ D D+ LFGA+ +V+ + R T P E + ++ +GL + R+ L+ + +
Sbjct: 172 SQDYDSLLFGAEKLVRNLTVSRKRKIRGRTITVNP-ETISLDEVLSGLEITREQLVEIGI 230
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
LIG D + +G++GIG AL+ V++ + + IL+
Sbjct: 231 LIGTDFN-SGIRGIGPKKALKIVRDGTFENILS 262
>gi|302845188|ref|XP_002954133.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
gi|300260632|gb|EFJ44850.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
Length = 254
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 96/196 (48%), Gaps = 8/196 (4%)
Query: 44 KKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPV 103
K + + HL L FFR I PVFV DG LK +AR R L
Sbjct: 8 KGDMMRNAHL-LGFFRRICRLLFHRVRPVFVFDGATPALKRHTNIARRRRREAQQGVLRK 66
Query: 104 AEEGILV-----ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACI 158
E +L+ +RN + + L G+P + AEA CA L G VD +
Sbjct: 67 TAEKLLIAQLKKQRNVGMPLKLNVAIPLAAFKGVPTVSEPAAAEAQCAFLEVSGLVDGVV 126
Query: 159 TADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
T D+D FLFGA+ V + I N K+ E Y +SD+E LGL R+ L M+LL+G+D+ G
Sbjct: 127 TDDNDVFLFGARHVYRHIFEN-KKYVEEYQMSDVERELGLTRERLAEMALLLGSDYT-EG 184
Query: 219 VQGIGLDTALQFVQNF 234
GIG+ A++ VQ F
Sbjct: 185 CGGIGIVNAVEVVQAF 200
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T + VQE LL FG+P + A EAEA CA+L G VD IT DSD LFG
Sbjct: 713 EVTETMINDVQE---LLRRFGIPYITAPMEAEAQCAELLKIGLVDGIITDDSDCLLFGGD 769
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K + N K+ ECY DIEA +GL R LI ++LL+G+D+ G++GIG A++
Sbjct: 770 HVYKNMF-NQKQYVECYIKDDIEAKVGLSRDKLIELALLLGSDY-TEGIKGIGPVLAMEI 827
Query: 231 VQNF 234
+ F
Sbjct: 828 LAEF 831
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ NS+P H+ + F
Sbjct: 1 MGVHS-LWDIVGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNSLPSSHI-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST 100
FR I FG P+FV DG LK + AR R A T
Sbjct: 59 FRRICKLLYFGILPIFVFDGGVPVLKRETINARKNRRLKKAET 101
>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLAR------FYRSTIDASTLP 102
HL F+RTINL + G PV+V DG P +KS + RL R YR ++A +
Sbjct: 27 HLSGLFYRTINLVEE-GIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVE 85
Query: 103 VAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
A + ++ T V+E ELL+ GMP ++A E EA A + +G A + D
Sbjct: 86 EARKYAMMAARLTS-DMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDY 144
Query: 163 DAFLFGAKCVVK--CIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIG 211
D+ LFG+ +V+ I K P E + + + LG+ R+ LIA+ +L+G
Sbjct: 145 DSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLG 204
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI-PQY 254
D++ GV+G G TAL+ V++ + + +L + G+ P Y
Sbjct: 205 TDYNPGGVRGYGPKTALRLVKSLGDP--MKVLASVPRGEYDPDY 246
>gi|81883819|sp|Q5XIP6.1|FEN1_RAT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53733451|gb|AAH83630.1| Fen1 protein [Rattus norvegicus]
gi|149062370|gb|EDM12793.1| flap structure-specific endonuclease 1 [Rattus norvegicus]
Length = 380
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV++ DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYIFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ V+GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESVRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|354503001|ref|XP_003513570.1| PREDICTED: flap endonuclease 1-like [Cricetulus griseus]
Length = 380
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGVEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|336463192|gb|EGO51432.1| hypothetical protein NEUTE1DRAFT_70166 [Neurospora tetrasperma FGSC
2508]
gi|350297610|gb|EGZ78587.1| PIN domain-like protein [Neurospora tetrasperma FGSC 2509]
Length = 1269
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL FG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 883 MITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 941
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SDIE L L R LIA++ L+G+D+ G+ G+G TA++ + F
Sbjct: 942 NGNKFVECYLSSDIERDLSLSRDQLIALAQLLGSDY-TEGLSGVGPVTAVEILSEF 996
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L L KR+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I +G PVFV DG LK
Sbjct: 59 FRRICKLLWYGIKPVFVFDGGAPALK 84
>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLAR------FYRSTIDASTLP 102
HL F+RTINL + G PV+V DG P +KS + RL R YR ++A +
Sbjct: 27 HLSGLFYRTINLVEE-GIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVE 85
Query: 103 VAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
A + ++ T V+E ELL+ GMP ++A E EA A + +G A + D
Sbjct: 86 EARKYAMMAARLTS-DMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDY 144
Query: 163 DAFLFGAKCVVK--CIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIG 211
D+ LFG+ +V+ I K P E + + + LG+ R+ LIA+ +L+G
Sbjct: 145 DSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLG 204
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI-PQY 254
D++ GV+G G TAL+ V++ + + +L + G+ P Y
Sbjct: 205 TDYNPGGVRGYGPKTALRLVKSLGDP--MKVLASVPRGEYDPDY 246
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 32/240 (13%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S I Q A+++ + HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSIYQFLIAVRQRDGEQLMSDTGETTSHLMGFFYRTLRMVDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQARLARF------------YRSTIDASTLP-VAEEGILVERNQTFLKCVQEC 123
G P LKS +RF + T DA T+ ++ + V + EC
Sbjct: 88 GKPPDLKSNVLKSRFEKREDATEQGEEAKETGDAETIDRLSRRTVRVTKEHNM-----EC 142
Query: 124 VELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTK 181
+LL L G+PV++A EAEA CA+L G V A + D D FGA +++ K
Sbjct: 143 RKLLRLMGIPVVEAPSEAEAQCAELVRGGKVWAAGSEDMDTLTFGAPILLRHLTFSEQKK 202
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEIL 240
EP Y + + GL + R+ + +L+G D+ L V+G+G TAL+ ++ + S DEI+
Sbjct: 203 EPISHYYLEEALTGLEMGREQFTDLCILLGCDY-LEPVKGVGPSTALKLIREYGSLDEIV 261
>gi|85116383|ref|XP_965045.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
gi|28926846|gb|EAA35809.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
Length = 1269
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL FG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 880 MITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 938
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SDIE L L R LIA++ L+G+D+ G+ G+G TA++ + F
Sbjct: 939 NGNKFVECYLSSDIERDLSLSRDQLIALAQLLGSDY-TEGLSGVGPVTAVEILSEF 993
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L L KR+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I +G PVFV DG LK
Sbjct: 59 FRRICKLLWYGIKPVFVFDGGAPALK 84
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ V + + +L LFG+P + A EAEA CA LN G VD IT DSD FLFG K V+K +
Sbjct: 726 QMVAQIMTMLRLFGIPYITAPMEAEAQCATLNELGLVDGIITDDSDVFLFGGKRVLKNMF 785
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + EC+ + D+ LGL R LI ++ L+G+D+ G+ G+G A++ ++ F +
Sbjct: 786 -NQSKTVECFLLPDLARELGLDRDTLIRLAYLLGSDY-TEGLPGVGPVVAMELLKEFQGE 843
Query: 238 EILN 241
+ L+
Sbjct: 844 DGLH 847
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W+LL P R L+ + K +A+D S WI Q + ++ + H+ + F
Sbjct: 1 MGVKS-LWELLTPVGRPVMLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I +G PVFV DG LK
Sbjct: 59 LRRICKLMYYGIKPVFVFDGGAPALK 84
>gi|340517177|gb|EGR47422.1| predicted protein [Trichoderma reesei QM6a]
Length = 1166
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 867 MIAECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFGGTRVYKNMF- 925
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY SD+E + L R+ LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 926 NSNKFVECYIASDLEKEMSLSREQLISLAQLLGSDY-TEGLPGVGPVTAVEILSEF 980
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPALK 84
>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLAR------FYRSTIDASTLP 102
HL F+RTINL + G PV+V DG P +KS + RL R YR ++A +
Sbjct: 27 HLSGLFYRTINLVEE-GIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRALEAGEVE 85
Query: 103 VAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
A + ++ T V+E ELL+ GMP ++A E EA A + +G A + D
Sbjct: 86 EARKYAMMAARLTS-DMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDY 144
Query: 163 DAFLFGAKCVVK--CIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIG 211
D+ LFG+ +V+ I K P E + + + LG+ R+ LIA+ +L+G
Sbjct: 145 DSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELESLLSKLGITREQLIAVGILLG 204
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI-PQY 254
D++ G++G G TAL+ V++ + + +L + G+ P Y
Sbjct: 205 TDYNPGGIRGYGPKTALRLVKSLGDP--MKVLASVPRGEYNPDY 246
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 876 MITECQALLRLFGIPYITAPMEAEAQCAELVRLGIVDGIVTDDSDTFLFGGTRVYKNMF- 934
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY D+E L L R LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 935 NSNKFVECYISKDLEKELSLSRDQLISLAQLLGSDY-TEGLPGVGPVTAVEILSEFP--- 990
Query: 239 ILNILHKIGNGDIPQYWGDIKS 260
K G D ++W ++S
Sbjct: 991 -----GKSGLEDFREWWTSVQS 1007
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPALK 84
>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLAR------FYRSTIDASTLP 102
HL F+RTINL + G PV+V DG P +KS + RL R YR ++A +
Sbjct: 27 HLSGLFYRTINLVEE-GIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRALEAGEVE 85
Query: 103 VAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
A + ++ T V+E ELL+ GMP ++A E EA A + +G A + D
Sbjct: 86 EARKYAMMAARLTS-DMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDY 144
Query: 163 DAFLFGAKCVVK--CIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIG 211
D+ LFG+ +V+ I K P E + + + LG+ R+ LIA+ +L+G
Sbjct: 145 DSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELESLLSKLGITREQLIAVGILLG 204
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI-PQY 254
D++ G++G G TAL+ V++ + + +L + G+ P Y
Sbjct: 205 TDYNPGGIRGYGPKTALRLVKSLGDP--MKVLASVPRGEYDPDY 246
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 20/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEG---ILVER-NQTFLKCVQE----CVELLEL 129
P LKS R R L A E +E+ N+ ++ +E ELL+L
Sbjct: 88 KPPDLKSGELAKRAERREEAEKALKAATEAGDDAEIEKFNRRLVRVTKEHAREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P ++A EAEA CA L G V A T D DA FG+ +++ + K P + +
Sbjct: 148 MGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GLG+ + I + +L+G D+ ++GIG A++ + N+ + E +
Sbjct: 208 SYEKLLDGLGVNNREFIDLCILLGCDY-CESIKGIGPKRAIELINNYRDIETILDNLDTS 266
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 267 KYTVPENW 274
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 913 MVTECQQLLRLFGIPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 971
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L L +++LI+++ L+G+D+ +G+ G+G TA++ + F
Sbjct: 972 NGNKFVECYLASDLEKELSLSQENLISLAQLLGSDY-TDGLPGVGPVTAVEILSEF 1026
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWQVLQPCARPTKLEMLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGIKPVFVFDGGAPVLK 84
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 21/248 (8%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVP----KPHLRLT- 56
+G +F DL+ P L L++K VA+D + Q ++I+ ++ P K + T
Sbjct: 1 MGVQFNDLI-PKKEI-SLKDLKNKTVAIDSMNILYQFLSSIRLRDGSPLRNSKGEITSTY 58
Query: 57 ---FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVER 112
F++ I + P++V DG P LK + R R + + EEG L +
Sbjct: 59 NGIFYKNIYMLEN-DITPIWVFDGKPPELKHKTREERKKVKEKAMEEYISAKEEGNLEDM 117
Query: 113 NQ-----TFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ +L K V+ LL L G+P + A E EA C+ + +G V A ++ D DA
Sbjct: 118 QKYAKRINYLEPKVVENSKRLLNLMGIPFINAPSEGEAQCSYMAKKGDVYAVVSQDYDAL 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA V+ I + K P E + ++ L + +LI M++LIG D+++ GV+GIG
Sbjct: 178 LYGAPRTVRNITASNK-PLELIELDEVLGALNITLDNLIDMAILIGTDYNIGGVKGIGPK 236
Query: 226 TALQFVQN 233
AL V+N
Sbjct: 237 KALDIVKN 244
>gi|400603046|gb|EJP70644.1| DNA excision repair protein [Beauveria bassiana ARSEF 2860]
Length = 1154
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 867 MVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFGGTRVYKNMF- 925
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY +++E L L R+ LIA++ L+G+D+ G+ G+G TA++ + F
Sbjct: 926 NSNKFVECYLGNELEKDLSLSRQQLIALAHLLGSDY-TEGLPGVGPVTAVEIISEF 980
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPALK 84
>gi|448124207|ref|XP_004204862.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358249495|emb|CCE72561.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1067
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E Q + VQE LL+ FG+P + A EAEA CA+L G VD IT DSD FLFG
Sbjct: 799 EPTQNMISDVQE---LLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDSDCFLFGGD 855
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K + N K+ ECY DIE+ LGL + +LI ++LL+G+D+ GV+GIG A++
Sbjct: 856 KVYKNMF-NQKKYVECYSQKDIESHLGLSQDNLIELALLLGSDY-TRGVKGIGPVLAVEI 913
Query: 231 VQNF 234
+ F
Sbjct: 914 LAEF 917
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P A+ L+ L K++AVD S WI Q A++ N++P+ H+ + F
Sbjct: 1 MGVNS-LWDIVGPTAKPVKLEALSRKKLAVDASIWIYQFLKAVRDAEGNALPQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I +G PVFV DG LK Q
Sbjct: 59 FRRICKLLYYGIMPVFVFDGGAPILKKQT 87
>gi|346321714|gb|EGX91313.1| DNA excision repair protein Rad2 [Cordyceps militaris CM01]
Length = 1162
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 10/144 (6%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 871 MVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFGGTRVYKNMF- 929
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY S++E L L R+ LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 930 NSNKFVECYIGSELEKDLSLSRQQLISLAHLLGSDY-TEGLPGVGPVTAVEILSEFP--- 985
Query: 239 ILNILHKIGNGDIPQYWGDIKSTE 262
+ G G +W ++S++
Sbjct: 986 -----GRDGLGHFRAWWDAVQSSQ 1004
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG P+FV DG LK
Sbjct: 59 FRRICKLLWFGIQPIFVFDGGAPALK 84
>gi|385805407|ref|YP_005841805.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
gi|383795270|gb|AFH42353.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
Length = 350
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 133/271 (49%), Gaps = 31/271 (11%)
Query: 3 VGGKFWDLLKPYARFE-GLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPH 52
+G +L+ P A E L+ L+ + +A+D + Q AI++ + P H
Sbjct: 4 LGVNIRELIPPEAIKEIELESLKGRTIAIDAYNALYQFLAAIRQPDGTPLIDNKGRVTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA--RLARFYRSTIDASTLPVAEEGILV 110
L F+RTINL + G P++V DG P LK + + + + +AEE
Sbjct: 64 LSGIFYRTINLI-EAGIKPIYVFDGLPPSLKEKELEKRRKVKEEAAKKYQVAIAEEKYEE 122
Query: 111 ERNQTFL------KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
R + + V+E ++LL+ G+P ++A E EA A + +G V + + D D+
Sbjct: 123 ARKYAQISTRLNDEMVKEAIKLLDAMGLPTVQAPAEGEAQAAYMAKKGDVWSSGSQDYDS 182
Query: 165 FLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGND 213
LFG+ VV+ + + K E + I LG+ R+ LI + +++G D
Sbjct: 183 ILFGSPRVVRNLTVSGKRKLPKKDVYIDIKPEVIESNVIYEKLGINREKLIIIGIMLGTD 242
Query: 214 HDLNGVQGIGLDTALQFVQNFSE-DEILNIL 243
++ +G++G+G+ TAL+ V+++ + +EIL L
Sbjct: 243 YNPDGIKGVGIKTALKIVKSYEKTEEILKSL 273
>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
Length = 1128
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 827 MVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMF- 885
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + EC+ SD+E L R LI + L+G+D+ G+ G+G TAL+ + F+
Sbjct: 886 NQSKFVECFLSSDLEKEYALDRIKLIQFAHLLGSDY-TEGIPGVGPVTALEIITEFT 941
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPILKRQ 86
>gi|448121834|ref|XP_004204307.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358349846|emb|CCE73125.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1063
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + ELL+ FG+P + A EAEA CA+L G VD IT DSD FLFG V K +
Sbjct: 800 MISDVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDSDCFLFGGDKVYKNMF- 858
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N K+ ECY DIE+ LGL + +LI ++LL+G+D+ GV+GIG A++ + F
Sbjct: 859 NQKKYVECYSQKDIESHLGLSQDNLIELALLLGSDY-TRGVKGIGPVLAVEILAEF 913
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P A+ L+ L K++AVD S WI Q A++ N++P+ H+ + F
Sbjct: 1 MGVNS-LWDIVGPTAKPVKLEALSRKKLAVDASIWIYQFLKAVRDGEGNALPQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I +G PVFV DG LK Q R R
Sbjct: 59 FRRICKLLYYGIMPVFVFDGGAPVLKKQTIADRRAR 94
>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
Length = 350
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 122/263 (46%), Gaps = 30/263 (11%)
Query: 3 VGGKFWDLLKPYARFE-GLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPH 52
+G D++ AR E L L+ +A+D + Q +AI++ + P H
Sbjct: 1 MGVNIRDIIPDQARREVDLKALKGYVIALDGYNMLYQFLSAIRQPDGTPLKDSQGRVTSH 60
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
L F+RTINL + G PV+V DG P +K + R R A A+E +E
Sbjct: 61 LSGLFYRTINLVEE-GLKPVYVFDGKPPEMKRKEIEERVARKKEAAEKYAKAKESGSIEE 119
Query: 113 NQTFLKC--------VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + + V E LL+ G+P ++A + EA A L +G A + D D+
Sbjct: 120 ARKYAQATSELSSDMVSEAKRLLDYMGIPWVQAPADGEAQAAHLAQKGDAWAAGSQDYDS 179
Query: 165 FLFGAKCVVKCIR-------PNTKEPFECYC-ISDIEA---GLGLKRKHLIAMSLLIGND 213
LFGA +V+ + PN E E I D+ A LG+ R+ LI + +L+G D
Sbjct: 180 LLFGAPRLVRNLAITGKRKLPNKDEYVEVKPEIIDLNAMLKALGITREQLILLGILVGTD 239
Query: 214 HDLNGVQGIGLDTALQFVQNFSE 236
D +G++G G TAL FV+ +
Sbjct: 240 FDPDGIKGYGPKTALNFVKGVKD 262
>gi|393234466|gb|EJD42028.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 548
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 118/280 (42%), Gaps = 60/280 (21%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFL-------------RDKRVAVDLSYWIVQHETAIKKNS 47
MGV G WD L+P AR + L L R R+ +D S W H K +
Sbjct: 1 MGVPG-LWDALQPAARTQSLSQLAVMQGFKSNTAGHRGFRIGIDASIWFF-HMQVFNKKA 58
Query: 48 V---PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA 104
V P +R FFR FA P+FV DG P R+ R
Sbjct: 59 VCMGENPEIRTLFFRCAK-FASLPLLPLFVFDGPERP--------RWKR----------- 98
Query: 105 EEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
G + R + ++ V+ E++E FG + A GEAEA A LN G +DA ++ D D
Sbjct: 99 --GKRISRRKD-MRLVEGMQEIIEAFGYECIHAPGEAEAELAHLNRIGIIDAILSDDVDT 155
Query: 165 FLFGAKCVVK----CIRPNTKEPF------------ECYCISDIEA--GLGLKRKHLIAM 206
FLFGA V++ + N P +CY D+ + L + LI +
Sbjct: 156 FLFGASLVIRNPSATLSANRGNPIKNSEGRADGNHVKCYRADDLRTHEDIALTQGGLILI 215
Query: 207 SLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+LL G D+ GV+GIG+ A Q D+++ + +
Sbjct: 216 ALLSGGDYH-PGVRGIGMGIARGLAQCGFGDQLVEAMRTL 254
>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
gi|317374886|sp|B6AFP1.1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
Length = 472
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 31/257 (12%)
Query: 18 EGLDFLRDKRVAVDLSYWIVQHETAIKKNSV----------PKPHLRLTFFRTINLFAKF 67
+ +D L + +A+D S W+ Q AI++ S H+ RTI L +
Sbjct: 21 QSIDSLIGRIIAIDASMWMYQFLAAIREGSQWGNLTNEAGESTSHISGMLSRTIRLL-EA 79
Query: 68 GAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCVQECVE- 125
G PVFV DG P LK + + R R L A EEG + ++ ++ E
Sbjct: 80 GIKPVFVFDGEPPELKMEELMKRKERREKAQQELEKAQEEGDTETIRKQLIRTIKITKEQ 139
Query: 126 ------LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--- 176
+L+L G+PV++A EAEA CA+L EG V T D+D+ FG V++ +
Sbjct: 140 SDDVKYMLKLLGIPVIEATSEAEAQCAELCKEGLVYGVATEDADSLTFGTPLVIRHLNFS 199
Query: 177 -------RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+ N+K + +S + + LGL + + + +L G D+ ++GIG TA +
Sbjct: 200 DGKFSDSKGNSKNSLQVIKLSTVLSDLGLSMQQFVDLCILCGCDY-CGTIRGIGALTAYK 258
Query: 230 FVQNFSEDE-ILNILHK 245
++ + E I+N L K
Sbjct: 259 LLKKHKDIETIINELDK 275
>gi|320580410|gb|EFW94633.1| Single-stranded DNA endonuclease [Ogataea parapolymorpha DL-1]
Length = 1011
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
++ ++ + + ++L FG+P + A EAEA CA+L G VD IT DSD FLFG V
Sbjct: 723 DEVTVRMILDIQDMLSRFGLPYITAPMEAEAQCAELLRLGLVDGIITDDSDCFLFGGDRV 782
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K + N K ECY + D+E LGL R+ LI ++LL+G+D+ G++G+G A++ +
Sbjct: 783 YKNMF-NEKNFVECYQMEDLERDLGLDRRMLIDLALLLGSDY-TEGIKGVGKVAAMEILA 840
Query: 233 NF 234
F
Sbjct: 841 EF 842
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W+++ P AR L+ + KR+AVD S WI Q A++ N + H+ + F
Sbjct: 1 MGVHG-LWEIVGPTARPVRLEAMAKKRLAVDASIWIYQFLKAVRDVQGNQLINSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPLLKKQT 87
>gi|451852103|gb|EMD65398.1| hypothetical protein COCSADRAFT_114116, partial [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG V K +
Sbjct: 942 MISECQQLLALFGLPYITAPMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMF- 1000
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY SD+ + L R+ LI ++ L+G+D+ G+ GIG TAL+ + F +
Sbjct: 1001 NAAKFVECYLSSDLTSEFSLTRQKLIDIAQLLGSDY-TEGIPGIGPVTALEILSEFQD 1057
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR + G PVFV DG LK Q
Sbjct: 59 FRRVCKLLFIGIKPVFVFDGGAPALKRQ 86
>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
6054]
gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 992
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + ELL FG+P + A EAEA CA+L G VD IT DSD FLFG V K +
Sbjct: 728 MITDVQELLRRFGIPYITAPMEAEAQCAELVKIGLVDGIITDDSDCFLFGGTKVYKNMF- 786
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N K+ ECY D+ +GL RK+LI ++LL+G+D+ G++GIG A++ + F
Sbjct: 787 NQKQYVECYSQDDVVDKIGLTRKNLIELALLLGSDY-TEGIKGIGPVLAMEILAEF 841
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ NS+P+ H+ + F
Sbjct: 1 MGVNS-LWDIVGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDSEGNSLPQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST 100
FR I FG FP+FV DG LK + R R A T
Sbjct: 59 FRRICKLLYFGIFPIFVFDGGAPALKRETINQRRERRQGQAET 101
>gi|393219213|gb|EJD04700.1| hypothetical protein FOMMEDRAFT_153772 [Fomitiporia mediterranea
MF3/22]
Length = 1041
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 122/286 (42%), Gaps = 61/286 (21%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFL-------------RDKRVAVDLSYWIVQHETAIKKNS 47
MGV G WD+L+P + L L R RV +D S W H T ++
Sbjct: 64 MGVPG-LWDILRPAGKQRSLTQLAVQDGFERNPGGRRGLRVGIDASIWFY-HATYGREGE 121
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP-LKSQARLARFYRSTIDASTLPVAEE 106
P LR FFR L ++ P+FV DG P LK + +++
Sbjct: 122 --NPELRTLFFRCARLMSR-PFLPLFVFDGPRRPELKRKKKIS----------------- 161
Query: 107 GILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFL 166
++ + +QE ++E FG A GEAEA A LN G +DA IT D D F+
Sbjct: 162 ----GKDHWMVSGMQE---IIEAFGFEWWCAPGEAEAELAYLNRIGVIDAIITDDVDTFV 214
Query: 167 FGAKCVV----KCIRPNTKEPFE------------CYCISDI--EAGLGLKRKHLIAMSL 208
FGA ++ K + NT P + Y SDI A +G+ R LI ++L
Sbjct: 215 FGATMIMRNPGKMLSGNTSHPIKNTAGKDDGEHTYTYTSSDILEHAEVGITRGGLILIAL 274
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQY 254
L G D+D G+ G G + A + D ++ + + + +P +
Sbjct: 275 LRGGDYDPEGIDGFGANIAHALARCGFGDTLVEAVRDLPSSRLPDF 320
>gi|358375820|dbj|GAA92396.1| DNA excision repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 1135
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG V K +
Sbjct: 801 MITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMF- 859
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY +D+E L R LI ++ L+G+D+ G+ GIG TAL+ + F
Sbjct: 860 NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDY-TEGIPGIGPVTALEILTEF 914
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++ P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHG-LWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I FG PVFV DG LK Q
Sbjct: 59 FRRICKLLYFGIQPVFVFDGGAPVLKRQ 86
>gi|45358876|ref|NP_988433.1| flap endonuclease-1 [Methanococcus maripaludis S2]
gi|45047742|emb|CAF30869.1| flap endonuclease [Methanococcus maripaludis S2]
Length = 324
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 115/247 (46%), Gaps = 21/247 (8%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHL 53
+G +F DL+ P L FLR+K VA+D I Q ++I+ KN
Sbjct: 1 MGVQFGDLI-PKTEI-SLKFLRNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITSTY 58
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR------FYRSTIDASTLPVAEEG 107
F++TI + G P++V DG LK + + R S ++A EE
Sbjct: 59 NGIFYKTIYMLEN-GMTPIWVFDGKSHELKEKTKEERRKSREGALDSYMEAKEQNNLEEM 117
Query: 108 ILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ FL K V +LLEL G+P + A E EA CA+L I+ D D+
Sbjct: 118 QKYAKRANFLDKKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNAFCVISQDYDSI 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA+ VVK I + K+ E + +GL + R LI ++LIG D++ G++G G
Sbjct: 178 LYGAENVVKNITSSNKD-IELIELEKTLSGLNISRDQLIDAAILIGTDYNPGGLKGFGPK 236
Query: 226 TALQFVQ 232
A+ V+
Sbjct: 237 KAIDTVK 243
>gi|347522663|ref|YP_004780233.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
gi|343459545|gb|AEM37981.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
Length = 350
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 33/262 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAF 70
LD LR K VA+D + Q AI++ + P HL F+RTINL + G
Sbjct: 19 LDALRGKAVAIDAYNALYQFLAAIRQPDGTPLMDSRGRITSHLSGLFYRTINLI-EHGIK 77
Query: 71 PVFVVDGTPSPLKS---------QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ 121
V+V DG P +KS ++ A+ Y I L A + T V+
Sbjct: 78 VVYVFDGKPPEIKSIEIERRKKVKSEAAKKYEEAIKKGDLEAARRYAQMASRLTE-DMVK 136
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E LL+ G+P ++A + EA A + +G V A + D DA LFGA +V+ + +
Sbjct: 137 EAKRLLDAMGVPWVQAPADGEAQAAYMARKGDVWAAASQDYDALLFGAPRLVRNLTITGR 196
Query: 182 EPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
E + + LG+ R+ LI + +L+G D++ +GV+GIG TAL+
Sbjct: 197 RKLPKKDVYVEIKPELIELDKLLKALGITREQLIVIGILVGTDYNPDGVRGIGPKTALRM 256
Query: 231 VQNFSEDEILNILHKIGNGDIP 252
V+ ++ ++ +L + + P
Sbjct: 257 VK--AQPDVRKLLRSLPRNEFP 276
>gi|356927843|gb|AET42633.1| flap endonuclease-1 [Emiliania huxleyi virus 202]
Length = 358
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 122/259 (47%), Gaps = 26/259 (10%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKN-----SVPK----PHLRLTFFRTINLFAKFGAF 70
LD L K + +D S I Q AI++ + P+ HL F+RTI L + G
Sbjct: 23 LDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAAPEGEVTSHLTGLFYRTIRLI-EAGIK 81
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQ-----TFLKCVQECVE 125
PV+V DG P LK + R R S L V ++ +E+ + + +E +
Sbjct: 82 PVYVFDGKPPQLKQKELDKRNERQAQALSELKVTDDSYEIEKQEKRSVRATREQSEEVKK 141
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEP 183
LL G+PV++A EAEA CA G A T D D+ FG+ V++ I K+P
Sbjct: 142 LLTFMGIPVVQAPCEAEATCAAYVKAGKAYATATEDMDSLTFGSTHVIRHINSTDQKKQP 201
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNI 242
Y + +I +G+ I + +L G D+ ++GIG A Q +Q S E +L++
Sbjct: 202 TVEYSLPNILNDMGITMDQFIEICILSGCDY-TKTIKGIGPTRAYQLIQEHSTIENVLDV 260
Query: 243 LHKIGNGD------IPQYW 255
L K +G+ +P+Y+
Sbjct: 261 LKK-KHGEEQFVTMVPEYY 278
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 12/161 (7%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVER--------NQTFLKCVQECVELLELFGMP 133
LKSQ ++ + I + + EE +L E+ ++ + + ELL+ FG+P
Sbjct: 689 LKSQIKMT--HAIPISSRDTRITEEQLLQEKLHKAKRDSDEVTENMIGDVQELLKRFGIP 746
Query: 134 VLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIE 193
+ A EAEA CA+L G VD IT DSD FLFG + K + + K+ ECY +DIE
Sbjct: 747 YITAPMEAEAQCAELYKIGLVDGIITDDSDCFLFGGDRIYKNMF-SQKQFVECYLKNDIE 805
Query: 194 AGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+GL R++LI +++L+G+D+ G++GIG A++ + F
Sbjct: 806 DKIGLSRENLIELAILLGSDY-TEGIKGIGPVLAVEILAEF 845
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ N++P+ H+ + F
Sbjct: 1 MGVQS-LWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALPQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILV 110
FR I FG P+FV DG LK Q R R ++ + A + +L
Sbjct: 59 FRRICKLLYFGIQPIFVFDGGVPVLKRQTINERKNRRQQNSESTRQAAQKLLA 111
>gi|336370553|gb|EGN98893.1| hypothetical protein SERLA73DRAFT_108084 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1055
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG + V K +
Sbjct: 742 QMISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMF 801
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + EC+ +SD+ LGL+R LI ++ L+G+D+ + G+ G+G A++ ++ F
Sbjct: 802 -NQSKTVECFLLSDLGRELGLERGTLIRLAYLLGSDY-VEGLSGVGPVVAMELLKEF 856
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W LL P R L+ + K +A+D S WI Q + ++ ++ H+ L F
Sbjct: 1 MGVKS-LWSLLSPVGRPVMLETIEGKALAIDSSIWIYQFQATMRDKDGRALVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQTF 116
R I +G PVFV DG LK R + + A S + +AE + + +
Sbjct: 59 LRRICKLLFYGIRPVFVFDGGAPALKRNTISERKKKKSGAAVSHVKLAERLLAAQLRREA 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLN 149
L Q PV K KG+A A +N
Sbjct: 119 LGHAQANRP-------PVSKGKGKAPAGSVMIN 144
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK-----SQARLAR-FYRSTIDASTLPVAE 105
HL F+RT+NL + G PV+V DG P LK ++ RL R + A L E
Sbjct: 10 HLNGVFYRTVNLIEE-GVIPVYVFDGKPPELKMEELENRRRLKEEAERKLVKAKELGKLE 68
Query: 106 EGILVERNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + + L +E ELL G+P++ A E EA A LN + A + D D
Sbjct: 69 EMRKYSQMSSRLTKGMAEESKELLSRMGVPIVNAPSEGEAEAAYLNYKNITFAAASQDYD 128
Query: 164 AFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGN 212
+ LFGAK +++ + K E + ++ LGL R+ LI +++LIG
Sbjct: 129 SLLFGAKRLIRNLTITGKRKLPNKDVYVEIKPEMIELDELLRKLGLTREQLIDVAILIGT 188
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILN 241
D++ +G++GIG TA + ++ + E ++
Sbjct: 189 DYNPDGIKGIGPKTAYKLIRTYKSIEAID 217
>gi|18977786|ref|NP_579143.1| flap endonuclease-1 [Pyrococcus furiosus DSM 3638]
gi|397651906|ref|YP_006492487.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
gi|28380014|sp|O93634.1|FEN_PYRFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|6980604|pdb|1B43|A Chain A, Fen-1 From P. Furiosus
gi|6980605|pdb|1B43|B Chain B, Fen-1 From P. Furiosus
gi|4102602|gb|AAD01514.1| endo/exonuclease [Pyrococcus furiosus DSM 3638]
gi|18893531|gb|AAL81538.1| flap structure-specific endonuclease [Pyrococcus furiosus DSM 3638]
gi|393189497|gb|AFN04195.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
Length = 340
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 29/242 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K++A+D I Q + I+ K+ P HL F+RTINL + G
Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQE 122
PV+V DG P K + R A E +E + + + +++
Sbjct: 75 PVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+P+++A E EA A + ++G V A + D D+ LFGA +V+ + K
Sbjct: 135 AKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ L L R+ LI +++L+G D++ G++GIGL AL+ V
Sbjct: 195 KLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIV 254
Query: 232 QN 233
++
Sbjct: 255 RH 256
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG V K +
Sbjct: 941 MIAECQQLLTLFGLPYVTAPMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMF- 999
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY D+ + L R+ +IA++ L+G+D+ G+ GIG TAL+ + F
Sbjct: 1000 NAAKFVECYLAQDLASEFSLTREKMIAIAQLLGSDY-TTGIPGIGPVTALEILSEF 1054
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTA-LWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR I G PVFV DG LK Q
Sbjct: 59 FRRICKLLFIGIKPVFVFDGGAPALKRQ 86
>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
Length = 1159
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 827 MVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 885
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY +D+E L R LI + L+G+D+ G+ G+G +AL+ + F
Sbjct: 886 NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDY-TEGIPGVGPVSALEILTEF 940
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F+ I FG PVFV DG LK Q ++R R
Sbjct: 59 FQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQR 94
>gi|74219985|dbj|BAE40572.1| unnamed protein product [Mus musculus]
Length = 380
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEGMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|336383338|gb|EGO24487.1| hypothetical protein SERLADRAFT_467880 [Serpula lacrymans var.
lacrymans S7.9]
Length = 413
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + LL LFG+P + A EAEA CA+L S G VD IT DSD FLFG + V K +
Sbjct: 10 QMISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMF 69
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + EC+ +SD+ LGL+R LI ++ L+G+D+ + G+ G+G A++ ++ F +
Sbjct: 70 -NQSKTVECFLLSDLGRELGLERGTLIRLAYLLGSDY-VEGLSGVGPVVAMELLKEFPGE 127
Query: 238 EILN 241
+ L+
Sbjct: 128 DGLH 131
>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
Length = 1159
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 827 MVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 885
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY +D+E L R LI + L+G+D+ G+ G+G +AL+ + F
Sbjct: 886 NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDY-TEGIPGVGPVSALEILTEF 940
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F+ I FG PVFV DG LK Q ++R R
Sbjct: 59 FQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQR 94
>gi|170095687|ref|XP_001879064.1| DNA repair endonuclease-like protein [Laccaria bicolor S238N-H82]
gi|164646368|gb|EDR10614.1| DNA repair endonuclease-like protein [Laccaria bicolor S238N-H82]
Length = 762
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 114/238 (47%), Gaps = 43/238 (18%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPK------PHLRLTFFRTINLFAKFGAFPVFVVDGTPS 80
RV VD+S WI Q + A +S+P+ P LR+ FFR +L A+ P+FV DG
Sbjct: 268 RVGVDVSVWICQAQAA--AHSMPRTQQGENPALRIIFFRICHLLAQ-SIQPIFVADGPNR 324
Query: 81 PLKSQARLARFYRSTIDASTLPVAEEGILVERNQT-FLKCVQECVELLELFGMPVLKAKG 139
P R+ R GI V ++ +++ E + ++ G P+ +A G
Sbjct: 325 P-----RVKR----------------GINVRADKPHWMEAYIE--DFVQEAGCPMYRAPG 361
Query: 140 EAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK---EPFECYCISDIEAGL 196
EAEA AQL + G + A +T D D FLFG ++K PN K + Y DI+A
Sbjct: 362 EAEAELAQLTAHGLIKAVLTTDFDVFLFGGTYMIK--PPNVKTDGDRITYYTSGDIQAQT 419
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQY 254
L LI +++L G D+D G+ G GL A Q Q E+ N+L +PQ+
Sbjct: 420 SLTCAKLIFIAILGGGDYDQVGLPGCGLKIAHQLAQG----ELPNLLFTAAT-TLPQH 472
>gi|380474820|emb|CCF45572.1| DNA-repair protein rad13 [Colletotrichum higginsianum]
Length = 622
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V EC LL LFG+P + A EAEA CA+L VD +T DSD FLFG + K + N
Sbjct: 285 VTECQALLRLFGIPYITAPMEAEAQCAELVRMSLVDGIVTDDSDCFLFGGTRIYKNMF-N 343
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
+ + ECY SD+E L L R+ LIA++ L+G+D+ G+ G+G TA++ + F+
Sbjct: 344 SNKFVECYLGSDLEKELSLSREQLIAIAQLLGSDY-TEGLPGVGPVTAVEILSEFT---- 398
Query: 240 LNILHKIGNGDIPQYWGDIK 259
K G ++W D++
Sbjct: 399 ----GKDGLERFKEWWQDVQ 414
>gi|344228751|gb|EGV60637.1| hypothetical protein CANTEDRAFT_132346 [Candida tenuis ATCC 10573]
Length = 960
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 100 TLPVAEEGILVER--------NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSE 151
T + EE +L ER + + + ELL FG+P L A EAEA C +L
Sbjct: 670 TTSITEEQLLQERLLKQKRDSEEVTQAMINDVQELLRRFGIPFLTAPMEAEAQCVELLKL 729
Query: 152 GYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIG 211
G VD +T DSD FLFG V K + N K+ ECY D+ LGL ++ LI + LL+G
Sbjct: 730 GLVDGIVTDDSDTFLFGGDRVYKNMF-NQKQFVECYLSEDVSGKLGLSQEKLIELGLLLG 788
Query: 212 NDHDLNGVQGIGLDTALQFVQNF 234
+D+ GV+GIG A++ + F
Sbjct: 789 SDY-TEGVKGIGPVLAMEILAEF 810
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD+L P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNS-LWDILGPTARPVRLEALTRKRLAVDASIWIYQFLKAVRDSEGNTLHSSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVF+ DG LK
Sbjct: 59 FRRICKLLYFGIQPVFIFDGGAPALK 84
>gi|254573770|ref|XP_002493994.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|238033793|emb|CAY71815.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|328354189|emb|CCA40586.1| DNA repair protein complementing XP-G cells [Komagataella pastoris
CBS 7435]
Length = 1043
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 7/157 (4%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + ++L FG+P + A EAEA CA+L VD IT DSD FLFG + + K +
Sbjct: 767 MIDDIQDMLTRFGIPYITAPMEAEAQCAELLKLKLVDGIITDDSDCFLFGGERIYKNMF- 825
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N K+ ECY + +I+ LGL R +I ++LL+G+D+ G++GIG+ TA++ + F +
Sbjct: 826 NEKQYVECYFLEEIQRDLGLTRNKMIEIALLVGSDY-TEGIKGIGIVTAMEILSEFDPQK 884
Query: 239 ILNILHK--IGNGDIPQY---WGDIKSTEEAVSHSDE 270
N K +G+G + + W D ++ A S+ E
Sbjct: 885 EGNSTPKNMLGSGSLINFRNWWMDYQNGVPAPSNESE 921
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV + W++L P AR L+ L K++AVD S WI Q A++ + H+ + F
Sbjct: 1 MGVH-QLWNVLGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGRAFASSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
F+ I FG PVFV DG LK
Sbjct: 59 FKRICKLLFFGIEPVFVFDGGAPILK 84
>gi|367044124|ref|XP_003652442.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
gi|346999704|gb|AEO66106.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
Length = 1226
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L VD +T DSD FLFG V K +
Sbjct: 871 MITECQALLRLFGIPYITAPMEAEAQCAELVRLNLVDGIVTDDSDIFLFGGTRVYKNVF- 929
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY +D+E L L R+ LI+++ L+G+D+ G+ G+G TAL+ + F
Sbjct: 930 NSNKYVECYLATDLETELSLSREQLISLAQLLGSDY-TEGLPGVGPVTALEILSEF 984
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+A+D S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQG-LWTVVQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I +G PVFV DG LK
Sbjct: 59 FRRICKLLWYGVKPVFVFDGGAPALK 84
>gi|390332710|ref|XP_001197560.2| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like
[Strongylocentrotus purpuratus]
Length = 384
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 22/245 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++++ HL F+RTI + + G P +V DG
Sbjct: 29 RKVAIDASMCIYQFLIAVRQDGSVLTNEEGETTSHLMGIFYRTIRMI-EHGLKPCYVFDG 87
Query: 78 TPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLKCV-------QECVELLEL 129
P +KS R R+ + E+G N+ + V +EC LL+L
Sbjct: 88 KPPEMKSGELTKRKEMRAEAEKELEKAKEQGDQENMNKFEKRLVKVTKQHNEECQHLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P +KA GEAEA C +L +G + T D DA FG +++ + K P + +
Sbjct: 148 MGVPYVKAPGEAEAQCCELVKKGKLYGVGTEDMDALTFGGNVLLRHLTVSEARKMPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GLGL R+ I + +L+G D+ ++GIG+ A + ++ + I IL KI
Sbjct: 208 NYQRVLEGLGLNRQQFIDLCILMGCDY-CGTIKGIGMKRAFELMK--THGSIETILEKID 264
Query: 248 NGDIP 252
P
Sbjct: 265 QNKYP 269
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 877 MVTECQALLRLFGIPYITAPMEAEAQCAELVKLGIVDGIVTDDSDTFLFGGTRVYKNMF- 935
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY D+E L L R LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 936 NSNKFVECYIGKDLEKELSLSRDQLISLAQLLGSDY-TEGLPGVGPVTAVEILSEF 990
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPALK 84
>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
Length = 1111
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 778 MVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 836
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY +D+E L R LI + L+G+D+ G+ G+G +AL+ + F
Sbjct: 837 NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDY-TEGIPGVGPVSALEILTEF 891
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F+ I FG PVFV DG LK Q ++R R
Sbjct: 59 FQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQR 94
>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
Length = 1287
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
++ + V EC LL LFG+P + A EAEA C++L S G VD +T DSD FLFG V
Sbjct: 900 DEVTMVMVSECQALLRLFGIPYITAPMEAEAQCSELVSLGLVDGIVTDDSDTFLFGGTRV 959
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K + N + EC+ +D+E + L R+ LI+++ L+G+D+ +G+ G+G TA++ +
Sbjct: 960 YKNMF-NGNKFVECFLAADLEKEMSLSREKLISLAQLLGSDY-TDGLPGVGPVTAMEILS 1017
Query: 233 NF 234
F
Sbjct: 1018 EF 1019
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWQVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR + FG PVFV DG LK
Sbjct: 59 FRRVCKLLWFGILPVFVFDGGAPALK 84
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 5/124 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T ++ VQE LL FG+P + A EAEA CA+L VD IT DSD FLFG
Sbjct: 766 EVTETMIRDVQE---LLRRFGIPYITAPMEAEAQCAELLKLNLVDGIITDDSDCFLFGGD 822
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K + N K+ ECY ++DI + +GL ++ LI ++LL+G+D+ G++GIG A++
Sbjct: 823 KVYKNMF-NQKQYVECYIMNDINSRMGLSQEKLIDLALLLGSDY-TEGIKGIGPVMAMEI 880
Query: 231 VQNF 234
+ F
Sbjct: 881 LAEF 884
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD+L P AR L+ L K++AVD S WI Q A++ NS+P+ H+ + F
Sbjct: 1 MGVNS-LWDILGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDQEGNSMPQAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG +P+FV DG LK Q R R
Sbjct: 59 FRRICKLLYFGIYPIFVFDGGAPALKRQTINQRRER 94
>gi|451997573|gb|EMD90038.1| hypothetical protein COCHEDRAFT_1106592 [Cochliobolus heterostrophus
C5]
Length = 1297
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG V K +
Sbjct: 941 MISECQQLLTLFGLPYITAPMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMF- 999
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY SD+ + L R+ LI ++ L+G+D+ G+ GIG TAL+ + F +
Sbjct: 1000 NAAKFVECYLSSDLTSEFSLTRQKLIDIAQLLGSDY-TEGLPGIGPVTALEILSEFQD 1056
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR + G PVFV DG LK Q
Sbjct: 59 FRRVCKLLFIGIKPVFVFDGGAPALKRQ 86
>gi|301781710|ref|XP_002926265.1| PREDICTED: flap endonuclease 1-like [Ailuropoda melanoleuca]
gi|281345366|gb|EFB20950.1| hypothetical protein PANDA_015901 [Ailuropoda melanoleuca]
Length = 380
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRGERRAEAEKQLQQAQAAGVEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|13506617|gb|AAK01853.1| flap endonuclease-1 [Mus musculus]
Length = 378
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 22/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS-------VPKPHLRLTFFRTINLFAKFGAFPVFVVDGT 78
++VA+D S I Q A+++ L F+RTI + + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSLMGMFYRTIRM--ENGIKPVYVFDGK 86
Query: 79 PSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLELF 130
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 87 PPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLM 146
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECYC 188
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 147 GIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFH 206
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKIG 247
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 LSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGAKRAVDLIQKHKSIEEIVRRLDP-S 264
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 265 KYPVPENW 272
>gi|729476|sp|P39749.1|FEN1_MOUSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|499649|gb|AAC37664.1| endonuclease-1 [Mus musculus]
Length = 378
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 22/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS-------VPKPHLRLTFFRTINLFAKFGAFPVFVVDGT 78
++VA+D S I Q A+++ L F+RTI + + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSLMGMFYRTIRM--ENGIKPVYVFDGK 86
Query: 79 PSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLELF 130
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 87 PPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLM 146
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECYC 188
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 147 GIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFH 206
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKIG 247
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 LSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGAKRAVDLIQKHKSIEEIVRRLDP-S 264
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 265 KYPVPENW 272
>gi|47224621|emb|CAG03605.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
V KPHLR ++ G VFV++G LK++ R +
Sbjct: 4 VSKPHLR------VSSLTLMGVKLVFVMEGEAPKLKAETMSKRTEARYGGFQKTSSTKSK 57
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
R + F ++EC ++L++ G+P + A GEAEA+CA L+S+G VD CIT D D FL+
Sbjct: 58 TSTSRGR-FKAVLKECADMLDILGVPWVTAAGEAEAMCAYLDSQGLVDGCITNDGDVFLY 116
Query: 168 GAKCVVKCIRPNTKEPF-ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDT 226
GA+ V + NTK+P +CY S G+QG+G +
Sbjct: 117 GAQTVYRSFNMNTKDPLVDCYKTS--------------------------RGIQGVGKEQ 150
Query: 227 ALQFVQNFSEDEILN 241
AL+ ++ E +L
Sbjct: 151 ALKLIRMLKEQTLLQ 165
>gi|320167228|gb|EFW44127.1| DNA-repair protein rad13 [Capsaspora owczarzaki ATCC 30864]
Length = 1235
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC-I 176
+ + + ELL LFGMP L A EAEA CA L+ G D IT DSD FLFGA+ V +
Sbjct: 888 EMIADTQELLRLFGMPYLTAPMEAEAQCAALDLAGITDGTITEDSDVFLFGARRVYRNFF 947
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-S 235
PN F Y S IE+ L L R+ LI ++LL+G+D+ +GV+ IG A++ + +F S
Sbjct: 948 NPNKYAEF--YASSAIESYLALDREKLIDLALLLGSDY-TSGVERIGPVLAMEILGDFPS 1004
Query: 236 EDEILNILHK 245
E LH+
Sbjct: 1005 LQEFATFLHQ 1014
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L + LD L +A+D+S W+ QH A++ N + HL +
Sbjct: 52 MGVKG-LWTILDAAGQSVNLDTLASHVLAIDVSIWLNQHMKAMRDAEGNVIRNAHL-IGL 109
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
FR + +G P+FV DG LK + R ++ + +L E +L
Sbjct: 110 FRRLCKLLYYGIKPLFVYDGGVPALKRRTLAGRRHQKDLAQDSLKKTAERLL 161
>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 332
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 110/247 (44%), Gaps = 35/247 (14%)
Query: 23 LRDKRVAVDLSYWIVQHETAIK----------KNSVPKPHLRLTFFRTINLFAKFGAFPV 72
L K +A+D WI Q T I+ K V HL F+R++++ PV
Sbjct: 19 LSGKLIAIDAFNWIFQFLTTIRLADGSYLTDSKGKVT-THLNGLFYRSVSMLEN-RIKPV 76
Query: 73 FVVDGTPSPLKSQARLAR------FYRSTIDASTLPVAEEGILVERNQTFLK--CVQECV 124
FV DG K + R +AST AEE + R + + +
Sbjct: 77 FVFDGAAPKFKKETLKEREKTKEEAIEKMQNAST---AEEKAMYMRRLSRIDDYIIDSSK 133
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
ELL G+P ++A E EA AQLN +G V A + D D LFGAK VV+ + K
Sbjct: 134 ELLSYLGIPYVQAPAEGEAQAAQLNMQGKVFAAASQDYDTLLFGAKKVVRNLNITNKRKI 193
Query: 185 ECYCISD------IEAG-----LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
I+ I A LG+ R+ LI +SL +G D++ GV GIG AL+ V+
Sbjct: 194 SGKGITTSVLPELINANPNLARLGITREQLITLSLFVGTDYN-KGVDGIGPKKALKIVKE 252
Query: 234 FSEDEIL 240
S +EI
Sbjct: 253 KSREEIF 259
>gi|395545349|ref|XP_003774565.1| PREDICTED: flap endonuclease 1 [Sarcophilus harrisii]
Length = 380
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGEATSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E + F K + +EC LL L
Sbjct: 88 KPPQLKSGELAKRGERRAEAEKQLQQAQEAGAEEEAEKFAKRLVKVTKQHNEECKRLLRL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L+A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLEAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNIL 243
+S + GLGL ++ + + +L+G+D+ ++GIG A+ +Q S +EIL L
Sbjct: 208 HLSRVLQGLGLTQEQFVDLCILLGSDY-CESIRGIGPKRAMDLIQQHKSIEEILRRL 263
>gi|241640723|ref|XP_002410900.1| xp-G/rad2 DNA repair endonuclease, putative [Ixodes scapularis]
gi|215503598|gb|EEC13092.1| xp-G/rad2 DNA repair endonuclease, putative [Ixodes scapularis]
Length = 250
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 127/275 (46%), Gaps = 47/275 (17%)
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
++DIE+ LGL R+ LIA+++L G D+ G+Q +G +TAL+F+ + +N++ ++ +
Sbjct: 1 MADIESKLGLNREKLIALAVLSGCDY-FPGLQNVGKETALKFLHSLQH---VNVIERLRS 56
Query: 249 GDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGC 308
+ + + ++ +AV + K SHC+ C H GT+ +H CE C + C
Sbjct: 57 WFVDKKYETLERKVDAV--------VKKHSHCTHCQHLGTRSSHQTNGCEAC--GTKKAC 106
Query: 309 -LKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALE--------TNFPNDEIVTM 359
L +P+ C C K HE W IK K+ LE FP ++++
Sbjct: 107 HLVQPESADCKC------------KWHEQWVIKQKWKVELELRKKAKEVKTFPPEDVIRE 154
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
+L +NN + ++W P + + W+ R + P+L+ +LR
Sbjct: 155 FLNKNN----KVERVDVTWTRPKASQFENLMSNTLRWKSQDSRDNLFPLLTCWHLRNKND 210
Query: 420 NPVQTLLCGQYEFDSIRRVKIRY--GHQSYVVKWK 452
+ T+L IR VK R G + V+W+
Sbjct: 211 DTRDTVLM------PIRIVKERVLQGADFFEVEWQ 239
>gi|50551183|ref|XP_503065.1| YALI0D20240p [Yarrowia lipolytica]
gi|49648933|emb|CAG81257.1| YALI0D20240p [Yarrowia lipolytica CLIB122]
Length = 1115
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL+LFG+P + A EAEA CA L + VD IT DSD FLF + ++ +
Sbjct: 819 MVDECQQLLQLFGIPFITAPTEAEAQCATLVNLDLVDGVITEDSDVFLFSSNPRMRVFKN 878
Query: 179 --NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY +IE L L+RK L+ ++LL+G+D+ +G+ GIG +A++ + F
Sbjct: 879 FFNSNKYVECYKTGEIEQTLNLERKDLVDLALLLGSDY-TDGLPGIGPVSAMEILAEF 935
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV G W++++ AR ++ L R+AVD S WI Q + HL + FFR
Sbjct: 1 MGVRG-LWEIVQSTARPVKVETLGGNRLAVDASIWIYQFLKTTRGAGKKNAHL-VGFFRR 58
Query: 61 INLFAKFGAFPVFVVDGTPSPLK 83
I G PVFV DG LK
Sbjct: 59 ILKLLFLGIKPVFVFDGVAPELK 81
>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
gi|48427872|sp|P61942.1|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
Length = 339
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVP--------KPH 52
MGV K +++ P + L K +A+D + Q +I+++ P H
Sbjct: 1 MGVNLK--EIVDPVKKEIEFKQLFGKVIAIDAFNALYQFLFSIRQDGEPLRDSKGRITSH 58
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDASTLPV 103
L F+RTINL ++G P++V DGTP K A +L Y+ + +
Sbjct: 59 LSGLFYRTINLL-EYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNI-- 115
Query: 104 AEEGILVERNQTFLKC--VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
+E I ++ L V+E +LLE G+P ++A E EA A L +G D C + D
Sbjct: 116 -QEAIKYAKSLGKLDSYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQD 174
Query: 162 SDAFLFGAKCVVKCIRPNTKEPF---ECYC-----ISDIEAGLG---LKRKHLIAMSLLI 210
D+ LFG+ VV+ I + K Y + ++EA L + R+ LIA+++L+
Sbjct: 175 YDSLLFGSPRVVRNITISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLL 234
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
G D++ V GIG TA++ V+ F + + +KI NG
Sbjct: 235 GTDYN-EKVPGIGPKTAIEIVKRFGDPIKVIEYYKIPNG 272
>gi|283481241|emb|CAZ69357.1| putative endonuclease [Emiliania huxleyi virus 99B1]
Length = 358
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 19/243 (7%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAF 70
LD L K + +D S I Q AI++ + HL F+RTI L + G
Sbjct: 23 LDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLI-EAGIK 81
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQ-----TFLKCVQECVE 125
PV+V DG P LK + R R S L + ++ VE+ + + +E +
Sbjct: 82 PVYVFDGKPPVLKKKELDKRNERQAHALSELKLTDDATEVEKQEKRSVRATREHSEEVKK 141
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEP 183
+L L G+PV++A EAEA CA G A T D D+ FG+ V++ I K+P
Sbjct: 142 MLTLMGIPVVQAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQP 201
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI-LNI 242
Y + +I +G+ I + +L G D+ ++GIG A Q +Q S EI L++
Sbjct: 202 TVEYSLPNILNDMGITMDQFIEICILSGCDY-TKTIKGIGPTRAYQLIQEHSTIEIVLDV 260
Query: 243 LHK 245
L K
Sbjct: 261 LKK 263
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL+L G+P ++A EAEA CA L+ G VDA +T DSDAFLFGA V + I ++K E
Sbjct: 774 LLQLLGIPYIEAAMEAEAQCAFLDRAGIVDAVVTEDSDAFLFGASRVYRHIFEDSKY-VE 832
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
Y ++ IE +GL R LI + LL+G+D+ +GV G+G+ A + V+ F D
Sbjct: 833 EYEMNRIERNMGLSRDKLICLGLLLGSDYS-DGVYGVGIVNATEIVEAFCRD 883
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK----NSVPKPHLRLT 56
MGV G W+LL P + G++ L +RVAVD S W+ Q A++ +V HL L
Sbjct: 1 MGVRG-LWELLAPAGQRVGIETLSGRRVAVDASIWLNQFVRAVRDTEAMTTVRNAHL-LG 58
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLK 83
FR +G VFV DG LK
Sbjct: 59 IFRRCCKLLYYGIEAVFVFDGGVPSLK 85
>gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera]
Length = 384
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 115/251 (45%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLL-EAGLKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LK Q RF R L A E E + F K ++C +LL
Sbjct: 88 GKPPDLKKQELAKRFSRRADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFEC 186
L G+PV++A EAEA CA L G V A + D D+ FGA K + + P++++ P
Sbjct: 148 LMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVME 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ I+ I L L I + +L G D+ + ++GIG TAL+ ++ I NIL I
Sbjct: 208 FDITKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHG--SIENILENI 264
Query: 247 GNG--DIPQYW 255
IP W
Sbjct: 265 NRERYQIPDDW 275
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + +L LFG+P + A EAEA CA L S G VD IT DSD FLFG V+K +
Sbjct: 837 QMISQIMIMLRLFGIPYITAPMEAEAQCAALLSFGLVDGIITDDSDVFLFGGGRVLKNMF 896
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + EC+ +SD+E LGL R L+ ++ L+G+D+ +G+ G+G A++ + F
Sbjct: 897 -NQSKTVECFLLSDLERELGLDRDKLVRLAYLLGSDY-TDGLPGVGPVVAMELLSEF 951
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W LL+P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVKS-LWQLLEPVGRPVLLETMEGKSMAIDSSIWIYQFQATMRDKEGRGLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I +G PVFV DG LK
Sbjct: 59 LRRICKLLFYGIKPVFVFDGGAPALK 84
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 124/278 (44%), Gaps = 27/278 (9%)
Query: 1 MGVGG--KFWDLLKPYA-RFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSV--------P 49
MG+ G K + P A +F + +++A+D S + Q A++
Sbjct: 1 MGILGLNKLLSDVAPNAIKFSDIKNYFGRKIAIDASMTLYQFLIAVRSEGAQLTDSSGET 60
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
HL TF+RTI + G PV+V DG P LKS R + L AEE
Sbjct: 61 TSHLMGTFYRTIRMVEN-GIKPVYVFDGKPPELKSGELSKRAEKREEAQKALAKAEESGN 119
Query: 110 VERNQTFLK--------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
E F + V EC ELL+L G+P ++A EAEA CA L G V A T D
Sbjct: 120 TEEVDKFSRRLVKVTKDHVAECKELLKLMGIPYIEAPCEAEAQCAALVKAGKVYATATED 179
Query: 162 SDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
DA FG+ +++ K P + + + A L + + I + +L+G D+ + +
Sbjct: 180 MDALTFGSNIILRHLTFSEARKMPVQEIYLDKVLAELEMTQNEFIDLCILLGCDY-CDSI 238
Query: 220 QGIGLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
+GIG A++ ++ E IL + +G +P+ W
Sbjct: 239 KGIGPKRAIELIKKHKSLE--KILENLDSGKYVVPEDW 274
>gi|73852488|ref|YP_293772.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|72415204|emb|CAI65441.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|347481843|gb|AEO97829.1| flap endonuclease-1 [Emiliania huxleyi virus 84]
gi|347600467|gb|AEP14954.1| endonuclease [Emiliania huxleyi virus 88]
Length = 358
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 113/243 (46%), Gaps = 19/243 (7%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAF 70
LD L K + +D S I Q AI++ + HL F+RTI L + G
Sbjct: 23 LDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAACEGEVTSHLTGIFYRTIRLI-EAGIK 81
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQ-----TFLKCVQECVE 125
PV+V DG P LK + R R S L + ++ VE+ + + +E +
Sbjct: 82 PVYVFDGKPPVLKKKELDKRNERQAQALSELKLTDDATEVEKQEKRSVRATREHSEEVKK 141
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEP 183
+L L G+PV++A EAEA CA G A T D D+ FG+ V++ I K+P
Sbjct: 142 MLTLMGIPVVQAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQP 201
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNI 242
Y + +I +G+ I + +L G D+ ++GIG A Q +Q S E +L++
Sbjct: 202 TVEYSLPNILNDMGITMDQFIEICILSGCDY-TKTIKGIGPTRAYQLIQEHSTIENVLDV 260
Query: 243 LHK 245
L K
Sbjct: 261 LKK 263
>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
Length = 1159
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC ELL LFG+P + A EAEA CA+L S G VD +T DSD FLFG V K +
Sbjct: 827 MISECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF- 885
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY +D+E L R LI + L+G+D+ G+ G+G +AL+ + F
Sbjct: 886 NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDY-TEGIPGVGPVSALEILTEF 940
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W ++KP AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F+ I FG PVFV DG LK Q ++R R
Sbjct: 59 FQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQR 94
>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
Length = 963
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 10/160 (6%)
Query: 85 QARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQECVELLELFGMPVLK 136
+ R+ + + I + V +E +L E+ Q + + + ELL FG+P +
Sbjct: 663 KTRIKTTHTAPISSIETRVTDEQLLREKLQKAKRDSDEVTEAMINDVQELLRRFGIPFIT 722
Query: 137 AKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGL 196
A EAEA CA+L G VD +T DSD FLFG + K + + K+ ECY D+ +
Sbjct: 723 APMEAEAQCAELFRIGLVDGIVTDDSDCFLFGGDKIYKNMF-DQKQYVECYMQDDLSTKM 781
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
GL RK LI ++LL+G+D+ G++GIG A++ + F +
Sbjct: 782 GLTRKKLIELALLLGSDY-TEGIKGIGPVLAMEILAEFGD 820
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W ++ P AR L+ L K++A+D S WI Q A++ NS+ H+ + F
Sbjct: 1 MGVHS-LWQIVGPSARPVRLEALSRKKLAIDASIWIYQFLKAVRDKDGNSLSSSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG P+FV DG LK + + R R
Sbjct: 59 FRRICKLLYFGILPIFVFDGGVPALKRKTIVQRKQR 94
>gi|358390983|gb|EHK40388.1| hypothetical protein TRIATDRAFT_41742 [Trichoderma atroviride IMI
206040]
Length = 1172
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L VD +T DSD FLFG V K +
Sbjct: 877 MITECQALLRLFGIPYITAPMEAEAQCAELVRLNMVDGIVTDDSDTFLFGGTRVYKNMF- 935
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N+ + ECY +D++ L L R+ LI+++ L+G+D+ G+ G+G TA++ + F +
Sbjct: 936 NSNKFVECYVGADLDKELSLSREQLISLAQLLGSDY-TEGLPGVGPVTAVEILSEFPGKD 994
Query: 239 ILNILHKIGNGDIPQYWGDIKST 261
L+ ++W D++S+
Sbjct: 995 GLDQFR--------EWWRDVQSS 1009
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGILPVFVFDGGAPALK 84
>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
Length = 381
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++ HL TF+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMCLYQFLIAVRSEGAQLTTVDGETTSHLMGTFYRTIRMVEQ-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVER----NQTFLKCVQ----ECVELLEL 129
P LKS R R L AEE VE N+ +K + E ELL+L
Sbjct: 88 KPPNLKSGELTKRAERRDEAQKLLQAAEEDGNVEAIDKFNRRLVKVTKTHADEAKELLQL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ K P +
Sbjct: 148 MGIPYVDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS--EDEILNILHK 245
+ AGL L I + +++G D+ N ++G+G A++ ++N E I NI
Sbjct: 208 HFDKVLAGLELNHNEFIDLCIMLGCDY-TNSIKGVGPKRAIELIKNHRSLEKIIENI--D 264
Query: 246 IGNGDIPQYW 255
+ IP+ W
Sbjct: 265 VKKYPIPEDW 274
>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
Sulfolobus solfataricus
gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
solfataricus P2]
Length = 302
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 22/207 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS-TLPVAE-EGIL 109
HL F+RTIN+ + G P++V DG P KS+ L R ++ +A L A+ EG +
Sbjct: 10 HLSGLFYRTINILEE-GVIPIYVFDGKPPEQKSE-ELERRRKAKEEAERKLERAKSEGKI 67
Query: 110 VE---RNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E +Q L+ V+E +LL G+P+++A E EA A LN G A + D
Sbjct: 68 EELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDY 127
Query: 163 DAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIG 211
DA LFGAK +V+ + K E + LG+ R+ LI + +LIG
Sbjct: 128 DAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG 187
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +G++GIG + AL+ ++ + + E
Sbjct: 188 TDYNPDGIRGIGPERALKIIKKYGKIE 214
>gi|403177167|ref|XP_003335732.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172758|gb|EFP91313.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1403
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L+ Q+ LL+LFG+P + + EAEA CA+L G VD IT DSD FLFG V K +
Sbjct: 954 LQMSQDIQNLLKLFGIPFVVSPMEAEAQCAELLKLGLVDGIITDDSDVFLFGGHRVYKNL 1013
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY ++D++ LGL ++ LI ++ L+G+D+ + G+ G+G TA++ + F
Sbjct: 1014 F-NQNKFVECYLMNDLDQELGLDQQKLIQLAFLLGSDYTV-GLNGVGPVTAMEILSEF 1069
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 7 FWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTFFRTINL 63
W L+ P AR L+ + K++A+D S W+ Q + A++ + H+ L F R I+
Sbjct: 82 LWTLISPVARPVNLETMGSKKLAIDSSIWLYQFQKAMRDREGKGIVNAHI-LGFLRRISK 140
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
+G PVFV DG LK Q R R
Sbjct: 141 LLYYGIKPVFVFDGGVPTLKKQTINERKKR 170
>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
Length = 872
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 115 TFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
T + ++ +LL LFG+P + A GEAEA CA L G VD IT DSD FLFGA V+K
Sbjct: 557 TMQQKFEDIRQLLALFGIPWIIAPGEAEAQCAYLQQNGLVDCVITEDSDVFLFGATKVLK 616
Query: 175 CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+K Y I+ LGL R LI ++L +G+D+ L G++G+G+ A++ V+ F
Sbjct: 617 GFFE-SKTSLVYYDTQYIKEDLGLNRDQLIYLALFLGSDYTL-GIKGVGIVNAMEIVEVF 674
Query: 235 SEDEIL 240
E L
Sbjct: 675 DNVEAL 680
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT-FFR 59
MGV W LL R + LR RVA+D+S W+++ + + V ++ L +
Sbjct: 1 MGVYN-LWKLLAAAGRNIDIASLRGLRVAIDVSIWMIKLLHGMSNSGVNFENVHLIGILK 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGI--LVERNQTF 116
I + G PVFV DG LK Q + R R + + +AE+ + L+E+
Sbjct: 60 RIMFLLENGIKPVFVFDGPAPELKRQTLIKRAQQRQQYNINLQKLAEKYVVKLIEKGYDI 119
Query: 117 LKCVQECVE 125
+ QE +E
Sbjct: 120 TQQNQELIE 128
>gi|296412156|ref|XP_002835792.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629585|emb|CAZ79949.1| unnamed protein product [Tuber melanosporum]
Length = 914
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
VQEC +LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 555 MVQECQQLLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMF- 613
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + ECY D+E L R LI ++ L+G+D+ GV +G TA++ + F+ D
Sbjct: 614 NQAKFVECYLAGDLEKEYALDRTGLIRIAHLLGSDY-TEGVPTVGPVTAMELLAEFASDN 672
Query: 239 IL 240
L
Sbjct: 673 GL 674
>gi|347482295|gb|AEO98236.1| flap endonuclease-1 [Emiliania huxleyi virus 203]
gi|347601360|gb|AEP15846.1| flap structure-specific endonuclease 1 [Emiliania huxleyi virus
207]
gi|357972633|gb|AET97906.1| flap endonuclease-1 [Emiliania huxleyi virus 201]
Length = 358
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 19/243 (7%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAF 70
LD L K + +D S I Q AI++ + HL F+RTI L + G
Sbjct: 23 LDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLI-EAGIK 81
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQ-----TFLKCVQECVE 125
PV+V DG P LK + R R S L + ++ VE+ + + +E +
Sbjct: 82 PVYVFDGKPPVLKKKELDKRNERQAQALSELKLTDDATEVEKQEKRSVRATREHSEEVKK 141
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEP 183
+L L G+PV++A EAEA CA G A T D D+ FG+ V++ I K+P
Sbjct: 142 MLTLMGIPVIQAPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQP 201
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNI 242
Y + +I +G+ I + +L G D+ ++GIG A Q +Q S E +L +
Sbjct: 202 TVEYSLPNILNDMGITMDQFIEICILSGCDY-TKTIKGIGPTRAYQLIQEHSTIENVLGV 260
Query: 243 LHK 245
L K
Sbjct: 261 LKK 263
>gi|353238841|emb|CCA70774.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Piriformospora indica DSM 11827]
Length = 1153
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ V + + LL LFG+P + A EAEA CA+L S G V+ IT DSD FLFGA V K +
Sbjct: 778 QMVSQIMMLLRLFGIPYITAPMEAEAQCAKLLSLGLVEGVITDDSDVFLFGATRVFKNMF 837
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + EC+ +D++ LGL ++ LI ++ L+G+D+ ++G++G+G A++ + F
Sbjct: 838 -NQSKTVECFLAADLQRELGLDQEKLIRLAYLLGSDY-VDGLEGVGPVVAMEILNEF 892
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV + W LL P R L+ + K +A+D S WI Q + ++ + HL L F
Sbjct: 1 MGVK-QLWKLLSPVGRPVLLETMEGKALAIDSSIWIYQFQATMRDKEGRGLVNAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
R I +G PVFV DG LK + R R
Sbjct: 59 LRRICKLLFYGIKPVFVFDGGAPALKRSTIVERKRR 94
>gi|218192294|gb|EEC74721.1| hypothetical protein OsI_10446 [Oryza sativa Indica Group]
Length = 1487
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 157/377 (41%), Gaps = 82/377 (21%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 859 ECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 918
Query: 182 ---------EPFECYCIS------------DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
+ +E + ++ DIE+ LGL R+ LI M++L+G+D+ G+
Sbjct: 919 YVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY-TEGIS 977
Query: 221 GIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHC 280
GIG+ A++ F E++ L + W ++S
Sbjct: 978 GIGIVNAIEVAHAFPEEDGLQKFRE---------W-------------------VESPDP 1009
Query: 281 SFCGHPGTKRAHFKFSCEYCIN-DNNEGCLKKPDGFKC--NCSLCNKNRKEKE--QKKHE 335
+ G G + + N + +G +P+ K + N+ ++ KE KH
Sbjct: 1010 TLLGKLGMESGSSSKKKKSGRNHSDGKGNSLEPEYTKGSDDSQSSNETQRIKEIFMSKHR 1069
Query: 336 NWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQP 395
N V + + FP++ ++ Y+ T SWG P + +L F
Sbjct: 1070 N----VSKNWHIPSTFPSEAVINAYISPQVDDSTE----PFSWGRPDSGLLRKF-----G 1116
Query: 396 WQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAA 455
W + ++P+ LRE + Q + Y F+ R KIR + KKA
Sbjct: 1117 WSKEKADELLIPV-----LREYNKHETQLRMEAFYSFNE-RFAKIRS------KRIKKAI 1164
Query: 456 SAISGVKY--TAPVDSD 470
I+G + T +D D
Sbjct: 1165 KGITGKSFLETDELDHD 1181
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L KR+AVD S W+VQ A+ K + + HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I A PVFV DG LK
Sbjct: 59 LRRICKLLFLRARPVFVFDGATPALK 84
>gi|222624409|gb|EEE58541.1| hypothetical protein OsJ_09837 [Oryza sativa Japonica Group]
Length = 1494
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 157/377 (41%), Gaps = 82/377 (21%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 866 ECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 925
Query: 182 ---------EPFECYCIS------------DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
+ +E + ++ DIE+ LGL R+ LI M++L+G+D+ G+
Sbjct: 926 YVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY-TEGIS 984
Query: 221 GIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHC 280
GIG+ A++ F E++ L + W ++S
Sbjct: 985 GIGIVNAIEVAHAFPEEDGLQKFRE---------W-------------------VESPDP 1016
Query: 281 SFCGHPGTKRAHFKFSCEYCIN-DNNEGCLKKPDGFKC--NCSLCNKNRKEKE--QKKHE 335
+ G G + + N + +G +P+ K + N+ ++ KE KH
Sbjct: 1017 TLLGKLGMESGSSSKKKKSGRNHSDGKGNSLEPEYAKGSDDSQSSNETQRIKEIFMSKHR 1076
Query: 336 NWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQP 395
N V + + FP++ ++ Y+ T SWG P + +L F
Sbjct: 1077 N----VSKNWHIPSTFPSEAVINAYISPQVDDSTEP----FSWGRPDSGLLRKF-----G 1123
Query: 396 WQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAA 455
W + ++P+ LRE + Q + Y F+ R KIR + KKA
Sbjct: 1124 WSKEKADELLIPV-----LREYNKHETQLRMEAFYSFNE-RFAKIRS------KRIKKAI 1171
Query: 456 SAISGVKY--TAPVDSD 470
I+G + T +D D
Sbjct: 1172 KGITGKSFLETDELDHD 1188
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L KR+AVD S W+VQ A+ K + + HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I A PVFV DG LK
Sbjct: 59 LRRICKLLFLRARPVFVFDGATPALK 84
>gi|195123149|ref|XP_002006071.1| GI18754 [Drosophila mojavensis]
gi|317374891|sp|B4KNM1.1|FEN1_DROMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193911139|gb|EDW10006.1| GI18754 [Drosophila mojavensis]
Length = 388
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LK+ R R L VA +E + + N+ ++ +E ELL+L
Sbjct: 88 KPPDLKAGELAKRAERREEAEKALKVATDAGDEAEIEKFNRRLVRVTKEHSNEAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L K I + +L+G D+ + ++GIG A++ ++ + +I IL I
Sbjct: 208 SYDKVLQGLELTSKEFIDLCILMGCDY-CDSIKGIGPKRAIELIKTYR--DIETILENID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TSKYIVPENW 274
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 129/292 (44%), Gaps = 28/292 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNS---------V 48
MG+ G K P + EG +D + +A+D S + Q +A++ +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG 107
H+ TF+RTI L G PV+V DG P +K R + L A EEG
Sbjct: 61 TTSHIIGTFYRTIKLIES-GIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEG 119
Query: 108 ------ILVERNQTFLK-CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
L++R K E +LL+L G+P ++A EAE CA L G A T
Sbjct: 120 DKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCVEANCEAEGTCAALVKAGKCYATATE 179
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
D DA G++ VV+ N KEP Y +S I G + I + +L+G D+ +
Sbjct: 180 DMDALTLGSEYVVRKFSASDNKKEPIREYSLSSILEETGFSMEQFIDLCILLGCDY-CDT 238
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKIGNG-DIPQYWGDIKSTEEAVSHSD 269
++G+G TA + +Q + I N+L + + +P+ W K E H D
Sbjct: 239 IKGVGPITAFELIQQYK--SIENVLKHLSDKYKVPENW-KYKEARELFLHPD 287
>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
Length = 1127
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L S G VD +T DSD FLFG + K +
Sbjct: 826 MVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNMF- 884
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
N + EC+ +D+E L R LI + L+G+D+ G+ G+G TAL+ + F+
Sbjct: 885 NQSKFVECFLSNDLEKEYALDRVKLIQFAHLLGSDY-TEGIPGVGPVTALEIITEFN 940
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPILKRQTIAARKKR 94
>gi|164663201|ref|XP_001732722.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
gi|159106625|gb|EDP45508.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
Length = 1109
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ E LL +FG+P L A EAEA CAQL + VD IT DSD FLFG V + +
Sbjct: 780 QMTAEIQALLRIFGLPYLTAPMEAEAQCAQLAMQHLVDGIITDDSDVFLFGGTPVYRNMF 839
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + ECY ++D+ LGL R+ LI ++ L+G+D+ G+ G+G A++ + F D
Sbjct: 840 -NNRRSVECYWMNDMHRELGLSRERLIQLAFLLGSDY-TEGLPGVGPVLAMEILSLFPGD 897
Query: 238 EIL 240
L
Sbjct: 898 YAL 900
>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 302
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 22/207 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILV 110
HL F+RTIN+ + G P++V DG P KS+ R + + EG +
Sbjct: 10 HLSGLFYRTINILEE-GVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIE 68
Query: 111 E---RNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E +Q L+ V+E LL G+P+++A E EA A LN G+ A + D D
Sbjct: 69 ELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYD 128
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIE----------AGLGLKRKHLIAMSLLIG 211
+ LFGAK +V+ I K P + I DI+ LG+ R+ LI +S+LIG
Sbjct: 129 SILFGAKRLVRNLTITGKRKLPNKDVYI-DIKPELIETELLLKKLGITREQLIDISILIG 187
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +G++GIG + AL+ ++ + + E
Sbjct: 188 TDYNPDGIKGIGPERALKIIKKYGKIE 214
>gi|395332541|gb|EJF64920.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 1217
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + +L LFG+P + A EAEA CA L S G VD IT DSD FLFG V+K +
Sbjct: 804 QMISQIMIMLRLFGIPYITAPMEAEAQCAALLSLGLVDGIITDDSDVFLFGGGRVLKNMF 863
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + EC+ +D+E LGL R L+ ++ L+G+D+ G+ G+G A++ + F
Sbjct: 864 -NQSKTVECFLTTDLERELGLDRDKLVRLAYLLGSDY-TEGLPGVGPVVAMELLSEFPGH 921
Query: 238 EILNILHKIGNGDIPQYWGDIKSTEEAVSHSDES 271
+ LHK Q+W ++S + S S
Sbjct: 922 ---DGLHKFK-----QWWMKVQSGRDKAEESASS 947
>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
Length = 302
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 22/207 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILV 110
HL F+RTIN+ + G P++V DG P KS+ R + + EG +
Sbjct: 10 HLSGLFYRTINILEE-GVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIE 68
Query: 111 E---RNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E +Q L+ V+E LL G+P+++A E EA A LN G+ A + D D
Sbjct: 69 ELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYD 128
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIE----------AGLGLKRKHLIAMSLLIG 211
+ LFGAK +V+ I K P + I DI+ LG+ R+ LI +S+LIG
Sbjct: 129 SILFGAKRLVRNLTITGKRKLPNKDVYI-DIKPELIETELLLKKLGITREQLIDISILIG 187
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +G++GIG + AL+ ++ + + E
Sbjct: 188 TDYNPDGIKGIGPERALKIIKKYGKIE 214
>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
gi|385776538|ref|YP_005649106.1| XPG I domain-containing protein [Sulfolobus islandicus REY15A]
gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
Length = 302
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 22/207 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILV 110
HL F+RTIN+ + G P++V DG P KS+ R + + EG +
Sbjct: 10 HLSGLFYRTINILEE-GVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIE 68
Query: 111 E---RNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E +Q L+ V+E LL G+P+++A E EA A LN G+ A + D D
Sbjct: 69 ELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYD 128
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIE----------AGLGLKRKHLIAMSLLIG 211
+ LFGAK +V+ I K P + I DI+ LG+ R+ LI +S+LIG
Sbjct: 129 SILFGAKRLVRNLTITGKRKLPNKDVYI-DIKPELIETELLLKKLGITREQLIDISILIG 187
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +G++GIG + AL+ ++ + + E
Sbjct: 188 TDYNPDGIKGIGPERALKIIKKYGKIE 214
>gi|385773896|ref|YP_005646463.1| XPG I domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
Length = 302
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 22/207 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILV 110
HL F+RTIN+ + G P++V DG P KS+ R + + EG +
Sbjct: 10 HLSGLFYRTINILEE-GVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIE 68
Query: 111 E---RNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E +Q L+ V+E LL G+P+++A E EA A LN G+ A + D D
Sbjct: 69 ELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNIIGFSWAAASQDYD 128
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIE----------AGLGLKRKHLIAMSLLIG 211
+ LFGAK +V+ I K P + I DI+ LG+ R+ LI +S+LIG
Sbjct: 129 SILFGAKRLVRNLTITGKRKLPNKDVYI-DIKPELIETELLLKKLGITREQLIDISILIG 187
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +G++GIG + AL+ ++ + + E
Sbjct: 188 TDYNPDGIKGIGPERALKIIKKYGKIE 214
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T ++ VQE LL+ FG+P + A EAEA CA+L G VD +T DSD FLFG
Sbjct: 756 EVTETMIRDVQE---LLKRFGIPYITAPMEAEAQCAELFRMGLVDGIVTDDSDCFLFGGS 812
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ K + N K+ ECY DI+ +GL + LI +++L+G+D+ G++GIG A++
Sbjct: 813 RIYKNMF-NQKQYVECYIAEDIKNKIGLDQDKLIELAMLLGSDY-TEGIKGIGPVMAMEI 870
Query: 231 VQNF 234
+ F
Sbjct: 871 LAEF 874
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ N + + H+ + F
Sbjct: 1 MGVTS-LWDIVGPAARPVKLEALSRKKLAVDASIWIYQFLKAVRDKDGNKLGQSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILV 110
FR I FG P+FV DG PLK Q L R R + +A + +L
Sbjct: 59 FRRICKLLYFGILPLFVFDGGAPPLKRQVILKRRERRSGNAENAQTTAQKLLA 111
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
+Q + + +L LFG+P + A EAEA CA+L + G VD IT DSD FLFG V
Sbjct: 835 HQMISQVMHGAEMMLRLFGIPYITAPMEAEAQCAELLALGLVDGIITDDSDVFLFGGARV 894
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+K + N + EC+ +SD+ LGL+R+ LI ++ L+G+D+ G+ G+G A++ +
Sbjct: 895 LKNMF-NQSKTVECFLLSDLGRELGLEREKLIRLAYLLGSDY-TEGLPGVGPVVAMELLT 952
Query: 233 NFS 235
FS
Sbjct: 953 EFS 955
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV W LL+P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVKS-LWSLLEPVGRPVPLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I+ +G PVFV DG LK
Sbjct: 59 LRRISKLLFYGIKPVFVFDGGAPALK 84
>gi|432089490|gb|ELK23431.1| Flap endonuclease 1 [Myotis davidii]
Length = 380
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMIEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLHQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|440633913|gb|ELR03832.1| flap endonuclease-1 [Geomyces destructans 20631-21]
Length = 395
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 23/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMNESGETTSHLLGMFYRTLRIVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFARKAEATEGLEEAKETGTAEDVEKFSRRTVRVSRQHNAECQQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILIRHLTFSEARKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
+ + GLG+ RK + + +L+G D+ L+ + IG +TAL+ + ++ S ++++ ++
Sbjct: 208 HVDKVLEGLGMDRKQFVDLCILLGCDY-LDPIPKIGPNTALKMIREHGSLEKVVEWINND 266
Query: 247 GNGD--IPQYW 255
G IP+ W
Sbjct: 267 GKNKYTIPEDW 277
>gi|156395298|ref|XP_001637048.1| predicted protein [Nematostella vectensis]
gi|156224157|gb|EDO44985.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 110/248 (44%), Gaps = 61/248 (24%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLRLTFFR 59
MGV + W++L+P + L LR KR+ VDLS WI + A K +V KPHLR FFR
Sbjct: 1 MGVT-QLWNILEPVKKEGSLCSLRGKRLCVDLSCWICEANGAKGLKTNVLKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
L + G VFVVDG P LK +A +++R Q
Sbjct: 60 IWQL-TRCGVKLVFVVDGEPPELKWEA----------------------IIKRTQ----- 91
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEG--YVDACITADSDAFLFGAKCVVK--C 175
A+ S G VD CIT D DAFL+GA+ V K C
Sbjct: 92 --------------------------ARFGSAGNAVVDGCITNDGDAFLYGARTVYKDLC 125
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
I + + LGL+R L+A+++L+G D+ GV G+G + +L+ +Q
Sbjct: 126 ISAKVCKKII-KIYIKVYKILGLRRTELVALAVLLGCDYLPQGVPGVGKEMSLKLIQELK 184
Query: 236 EDEILNIL 243
++L L
Sbjct: 185 GVDLLKRL 192
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A++ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKRLQQAQDVGTEEDVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|255539481|ref|XP_002510805.1| conserved hypothetical protein [Ricinus communis]
gi|223549920|gb|EEF51407.1| conserved hypothetical protein [Ricinus communis]
Length = 586
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F + ++E L G+ L + EAEA CA LNSE D C ++DSD FLFGA+ V +
Sbjct: 119 FSRMIKEAKILGLALGISCLDSLEEAEAQCALLNSESLCDGCFSSDSDVFLFGARTVYRD 178
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
I CY ++DIE LG R LI ++LL+G+D+ GV+G+G ++A Q V++
Sbjct: 179 ICLGDGGHVVCYEMADIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG 237
Query: 236 EDEILNILHKIGNGDI 251
+ N+L +I +G +
Sbjct: 238 DH---NVLQQIASGGL 250
>gi|358387657|gb|EHK25251.1| hypothetical protein TRIVIDRAFT_208179 [Trichoderma virens Gv29-8]
Length = 1196
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 899 MITECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFGGTRVYKNMF- 957
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+ + ECY +D++ + L R+ LI+++ L+G+D+ G+ G+G TA++ + F
Sbjct: 958 NSNKFVECYVGADLDKEMSLSREQLISLAQLLGSDY-TEGLPGVGPVTAVEILSEF 1012
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVNG-LWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLWFGIQPVFVFDGGAPALK 84
>gi|347601761|gb|AEP16246.1| flap endonuclease 1 [Emiliania huxleyi virus 208]
Length = 358
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 19/243 (7%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAF 70
LD L K + +D S I Q AI++ + HL F+RTI L + G
Sbjct: 23 LDLLSGKVIMIDASMQIYQCLIAIRQGPSGQLAASEGEVTSHLTGIFYRTIRLI-EAGIK 81
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQ-----TFLKCVQECVE 125
PV+V DG P LK + R R S L + ++ VE+ + + +E +
Sbjct: 82 PVYVFDGKPPVLKKKELDKRNERQAQALSELKLTDDATEVEKQEKRSVRATREHSEEVKK 141
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEP 183
+L L G+PV+++ EAEA CA G A T D D+ FG+ V++ I K+P
Sbjct: 142 MLTLMGIPVVQSPCEAEATCAAYVKTGKAYATATEDMDSLTFGSTYVIRHINSTDQKKQP 201
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNI 242
Y + +I +G+ I + +L G D+ ++GIG A Q +Q S E +L++
Sbjct: 202 TVEYSLPNILNDMGITMDQFIEICILSGCDY-TKTIKGIGPTRAYQLIQEHSTIENVLDV 260
Query: 243 LHK 245
L K
Sbjct: 261 LKK 263
>gi|347838761|emb|CCD53333.1| similar to flap endonuclease 1 [Botryotinia fuckeliana]
Length = 395
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 20/233 (8%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSGGEMLTNEDGETTSHLMGMFYRTLRIVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKATATEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAALARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEV 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ + GL + RK + + +L+G D+ L+ + IG TAL+ ++ + E L
Sbjct: 208 SLEKVLTGLNMDRKQFVDLCILLGCDY-LDPIPKIGPHTALKLIREHGDLETL 259
>gi|402220454|gb|EJU00525.1| PIN domain-like protein, partial [Dacryopinax sp. DJM-731 SS1]
Length = 557
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 120/278 (43%), Gaps = 60/278 (21%)
Query: 1 MGVGGKFWDLLKPYARFEGL-------DFLRDK------RVAVDLSYWIVQHETAIKKNS 47
MG+ G WD+L+P + L FLR+ R+ +D S W A
Sbjct: 1 MGIPG-LWDILRPAGKSRSLTHLTVVDGFLRNSSGKRAYRIGIDASIWFFH---ANGGQG 56
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
P LR +FR L + P+FV DG P SQ R G
Sbjct: 57 GENPELRTLYFRCCRLLS-LPILPLFVFDGALRP--SQKR-------------------G 94
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
+ +NQ +L V E+++ FG A GEAEA A N G +DA ++ D D FLF
Sbjct: 95 KHIGKNQHWL--VSGMREIIDAFGFEWWTAPGEAEAELAYFNDIGVIDAILSDDVDNFLF 152
Query: 168 GAKCVVKC-----------IRPNTKEPFE------CYCISDIEA--GLGLKRKHLIAMSL 208
GAK V++ +R +E + Y +DIE+ +GL+R LI + L
Sbjct: 153 GAKVVIRNPSATLTGTQTHVRKTGQEEKDDGQHVVIYRAADIESHPDVGLRRGGLILIGL 212
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ G D++ G+ GIG A + D++++ L ++
Sbjct: 213 MSGGDYNTTGLMGIGTSIAHALAKCGYGDQLVDHLEQL 250
>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 115/251 (45%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLL-EAGLKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LK Q RF R L A E E + F K ++C +LL
Sbjct: 88 GKPPDLKKQELAKRFSRRADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFEC 186
L G+PV++A EAEA CA L G V A + D D+ FGA K + + P++++ P
Sbjct: 148 LMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVME 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ I+ I L L I + +L G D+ + ++GIG TAL+ ++ E NIL I
Sbjct: 208 FDITKILEELNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIE--NILENI 264
Query: 247 GNG--DIPQYW 255
IP W
Sbjct: 265 NRERYQIPDDW 275
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++++ HL F+RTI + G P++V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQDGNVLTNEDGDTTSHLMGMFYRTIRM-VDHGIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R + L AEE E + + + +EC +LL
Sbjct: 88 KPPDLKSGELSKRAEKREEAEKALAKAEEEGETENVNKYQRRLVKVTKEHNEECKKLLTF 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P L A GEAEA CA+L G V A T D D+ FG+ VV+ K P + Y
Sbjct: 148 MGIPYLDAPGEAEAQCAELVKAGKVYATATEDMDSLTFGSSTVVRHMTFSEARKMPCQEY 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+++I A L L + I + +L+G D+ + ++GIG A+ ++
Sbjct: 208 NLNNILAELELSQDEFIDLCILLGCDY-CDSIRGIGPKRAIDLIRQ 252
>gi|398403715|ref|XP_003853324.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
gi|339473206|gb|EGP88300.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
Length = 1324
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 974 MITECQALLRLFGLPYITAPMEAEAQCAELVKLGLVDGIVTDDSDCFLFGGTRIYKNMF- 1032
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L R LI+++ L+G+D+ G+ G+G TAL+ + F
Sbjct: 1033 NQAKFVECYLTSDLEKEFDLTRGKLISVAHLLGSDY-TEGLPGVGPVTALEIISEF 1087
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWQIVQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK Q AR R
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKSR 94
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC +LL LFG+P + A EAEA CA+L + G VD +T DSD FLFG V K +
Sbjct: 939 MIAECQQLLTLFGLPYITAPMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMF- 997
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY D+ + L R+ +I ++ L+G+D+ G+ GIG TAL+ + F
Sbjct: 998 NAAKFVECYLAQDLTSEFNLTREKMIDIAQLLGSDY-TTGIPGIGPVTALEILSEF 1052
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTN-LWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR + G PVFV DG LK Q
Sbjct: 59 FRRVCKLLFIGIKPVFVFDGGAPALKRQ 86
>gi|301121670|ref|XP_002908562.1| DNA repair protein, putative [Phytophthora infestans T30-4]
gi|262103593|gb|EEY61645.1| DNA repair protein, putative [Phytophthora infestans T30-4]
Length = 483
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 82/157 (52%), Gaps = 12/157 (7%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V E + LL LFG+P L + EAEA CA L G VD IT DSD F FG + V K I
Sbjct: 195 MVAEVMSLLRLFGVPFLVSPMEAEAQCAALEQLGLVDGVITDDSDIFPFGGQRVYKNIFH 254
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ K E + DIE LG R+ +IA++LL+G+D+ +GV+GIG+ A + + + E
Sbjct: 255 HQK-FVEAFSARDIEQELGFSREQIIALALLLGSDY-TDGVRGIGIVNATEIAAAYPKIE 312
Query: 239 IL----------NILHKIGNGDIPQYWGDIKSTEEAV 265
L N+ + G + GD S +E V
Sbjct: 313 GLREFKDWVGEFNVAEEAQRGKEDESGGDSDSEDETV 349
>gi|317374923|sp|A7UW97.2|FEN1_NEUCR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 394
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 23/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNEAGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI- 246
+ + GLG++RK I + +L+G D+ L+ + +G TAL+ ++ E + K
Sbjct: 208 HLEKVLEGLGMERKQFIDLCILLGCDY-LDPIPKVGPSTALKLIREHGTLEKVVEWMKAD 266
Query: 247 --GNGDIPQYW 255
G IP+ W
Sbjct: 267 PKGRYQIPEDW 277
>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
Length = 301
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+NL + G P++V DG P +K+Q R L A+E +E
Sbjct: 10 HLNGLFYRTVNLLEQ-GVIPIYVFDGKPPEIKAQELENRRKLKEEAMKKLERAKEEGKIE 68
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ + + E LL L G+P ++A E EA A +NS+G V A + D D
Sbjct: 69 EVRKYSQMTSRLTSSMANEGKRLLSLMGIPTVQAPSEGEAEAAYMNSQGLVYAAASQDYD 128
Query: 164 AFLFGAKCVVKCIR-------PNTKEPFECYCISDIEAG-----LGLKRKHLIAMSLLIG 211
+ LFGA +++ + PN K+ + IEA LG+ R LI +++LIG
Sbjct: 129 SLLFGATRLIRNLTISGKRKLPN-KDAYVEVKPEVIEADLLLKKLGITRDELIDIAILIG 187
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +G++GIG A + ++ + E
Sbjct: 188 TDYNPDGIKGIGPKRAYKLIKTYKRIE 214
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 925 MITECQHLLTLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVYKNMF- 983
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + ECY +D+ + L R +IA++ L+G+D+ G+ GIG TAL+ + F +
Sbjct: 984 NAAKFVECYLANDLVSEFSLTRDKMIAIAQLLGSDY-TTGIPGIGPVTALELLAEFPD 1040
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
FR + G PVFV DG LK Q
Sbjct: 59 FRRVCKLLFIGIKPVFVFDGGAPVLKRQ 86
>gi|407916553|gb|EKG09919.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 392
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 21/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P+FV DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMSDTGETTSHLMGMFYRTLRMVDN-GIKPLFVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKSEAQEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLTFNSPVLLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNILHKI 246
+ + GL ++R+ I + +L+G D+ L+ ++G+G TAL+ V+ E ++ +
Sbjct: 208 HLDKVLEGLEMEREQFIDLCILLGCDY-LDPIKGVGPSTALKLVREHKNLEGVVKFMQGN 266
Query: 247 GNGDIPQYW 255
IP+ W
Sbjct: 267 SKYTIPEDW 275
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LKS R R L A +E + + N+ ++ +E ELL+L
Sbjct: 88 QPPDLKSGELAKRAERREEAEKALKAATEAGDEAEIDKFNRRLVRVTKEHSREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L K I + +L+G D+ ++G+G A++ ++++ +I IL I
Sbjct: 208 SYDKVLQGLELTSKEFIDLCILMGCDY-CESIKGVGPKRAIELIKSYR--DIETILENID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TSKYPVPENW 274
>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
gi|166973707|sp|A3DMG2.1|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
Length = 350
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 131/277 (47%), Gaps = 36/277 (12%)
Query: 1 MGVGGKFWDLLKPYARF--EGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP-------- 49
MGV K DL+ A+ E L LR K V +D + Q TAI++ + P
Sbjct: 1 MGVNLK--DLIPEEAKMTIEDLRMLRGKIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRI 58
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDAST 100
HL F+RTIN+ G P +V DG P +K++ ++ Y +
Sbjct: 59 TSHLSGLFYRTINILEN-GIKPAYVFDGKPPEIKAKEIEKRRKIREDASKKYEEALRKGD 117
Query: 101 LPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
+ A ++ T + VQ+ +LL+ G+P ++A E EA A + S+G A +
Sbjct: 118 IEAARRYAMMSAKLTD-EMVQDAKKLLDAMGIPWIQAPAEGEAQAAYIVSKGDAWASASQ 176
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCIS---------DIEAGLGLKRKHLIAMSLL 209
D D+ LFG+ +++ I K P + I + LGL R+ LI +++L
Sbjct: 177 DYDSLLFGSPRLIRNLTISGKRKLPRKNVYIEIKPEIIELKKLLEKLGLTREQLIYVAIL 236
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHK 245
IG D++ +GV+GIG ALQ V+ + D+IL I+ K
Sbjct: 237 IGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKIIPK 273
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCIRPNT--KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + N+ +I IL + + +P+ W
Sbjct: 242 GPKRAIELINNYR--DIETILDNLDSSKYTVPENW 274
>gi|389860888|ref|YP_006363128.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
gi|388525792|gb|AFK50990.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
Length = 353
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 35/269 (13%)
Query: 1 MGVGGKFWDLLKPYAR--FEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVP-------- 49
MGV K DL+ P A+ + L LR K V VD + Q AI+ + P
Sbjct: 1 MGVNLK--DLIPPEAKVVLDDLRVLRGKIVVVDGYNALYQFLAAIRGPDGSPLMDSSGRI 58
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDAST 100
HL F+RTINL + G PV+V DG P LK + A+ Y +
Sbjct: 59 TSHLSGLFYRTINLVEE-GIKPVYVFDGNPPELKIKELERRKALREEAAKKYEEAVKEGD 117
Query: 101 LPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
L A ++ T V+E LL++ G+P ++A E EA A + G A +
Sbjct: 118 LEAARRYAMMSSKLTS-DMVEEAKRLLKVMGIPWVQAPAEGEAQAAFMVRRGDAYASASQ 176
Query: 161 DSDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLL 209
D D+ LFG+ +V+ + + K E +S + LG+ R+ LI + +L
Sbjct: 177 DYDSLLFGSPRLVRNLTISGKRKLPRKDAYVEVKPEVIELSKLTEKLGITREQLIDIGIL 236
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+G D++ G +GIG TAL ++ + E
Sbjct: 237 LGTDYNPEGFEGIGPKTALTLIRTYGSIE 265
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 26/251 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRAEGAQLTNVDGETTSHLMGMFYRTIRLLEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDAS-----TLPVAEEGILVERNQTFLKCVQE----CVELLE 128
P P+ LA+ DA E + + N+ +K +E ELL+
Sbjct: 88 KP-PISKSGELAKRAERREDAQKALEKATEAGNEADMDKFNRRLVKVTKEHANEAKELLK 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+P ++A EAEA CA L G V A T D DA FG+ +++ K P +
Sbjct: 147 LMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEARKMPVKE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ + + G GL + I + +L+G D+ +G++GIG A + + ++ +I IL KI
Sbjct: 207 FSYAKVLDGFGLTSQEFIDLCILLGCDY-CDGIRGIGPKRATELMNSYK--DIETILEKI 263
Query: 247 GNGD--IPQYW 255
+P+ W
Sbjct: 264 DRKKYTVPEDW 274
>gi|324509011|gb|ADY43797.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 534
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 113/246 (45%), Gaps = 26/246 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI--VQHETAIKKNSVPKPHLRLTFF 58
MGV G W+ ++ Y + + LR+KR+AVD W+ V + ++ KPHL +
Sbjct: 1 MGVTG-MWEYMQKYVQPLDISSLRNKRIAVDGHIWLCEVMRGSVAHSSTARKPHLSTFYN 59
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE-----GILVERN 113
R +L K G P+ V D +AR D +P+ ++ GI
Sbjct: 60 RCRSLIEK-GIEPIVVFDAVDD-------IARQ-----DMQNIPLKKDRKRGTGIWAPEL 106
Query: 114 QT-FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
+T + ++E LL G+ + +K E EA CAQL G V CIT D D LFG +
Sbjct: 107 KTEIMTKIEEIKCLLNAMGVRWMASKLEGEAQCAQLERRGLVHGCITRDFDYILFGGNNL 166
Query: 173 VKC-IRPNTKEPFE---CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+ P K + + I L + R LIAMSL++G D+ G+ G+G TAL
Sbjct: 167 YQVEFGPGGKSIHDNILLLSMDYIGEELCVSRSCLIAMSLMMGCDYYQKGIPGVGAVTAL 226
Query: 229 QFVQNF 234
+ V F
Sbjct: 227 EIVSEF 232
>gi|327278874|ref|XP_003224185.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Anolis
carolinensis]
Length = 515
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + G PV+V DG
Sbjct: 162 RKVAIDASMSIYQFLIAVRQGADMLQNEEGETTSHLMGMFYRTIRMVEN-GLKPVYVFDG 220
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R T L A+E E + F K + +EC +LL L
Sbjct: 221 KPPQLKSGELAKRIERRTEAEKQLQEAKEAGEEENVEKFSKRLVKVTKQHNEECKKLLTL 280
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P + A GEAEA CA L V A T D D FG+ +++ + + K P + +
Sbjct: 281 MGIPYVDAPGEAEASCAALVKANKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 340
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+S I L L ++ + + +L+G D+ ++GIG A++ ++ I I+ +I
Sbjct: 341 HLSRILQDLSLTQEEFVDLCILLGCDY-CESIRGIGPKRAVELIKQHK--SIEKIIQQID 397
Query: 248 NG--DIPQYW 255
+P+ W
Sbjct: 398 TKKYSLPENW 407
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 28/292 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNS---------V 48
MG+ G K P + EG +D + +A+D S + Q +A++ +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG 107
H+ TF+RTI L G P++V DG P +K R + L A EEG
Sbjct: 61 TTSHIIGTFYRTIKLIES-GIKPIYVFDGKPPEMKDGELHKRKENAQKAQEQLDKALEEG 119
Query: 108 ------ILVERNQTFLK-CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
L++R K E +LL+L G+P ++A EAE CA L G A T
Sbjct: 120 DKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGTCAALVKAGKCYATATE 179
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
D DA G++ VV+ N K+P Y +S I G + I + +L+G D+
Sbjct: 180 DMDALTLGSEHVVRKFSANDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGCDY-CET 238
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKIGNG-DIPQYWGDIKSTEEAVSHSD 269
++G+G TA + +Q + I NIL + + +P+ W K E H D
Sbjct: 239 IKGVGPITAFELIQQYK--SIENILQHLSDKYKVPENW-KYKEARELFLHPD 287
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLAAVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P +KS R R L A +E + + N+ ++ +E ELL+L
Sbjct: 88 APPDMKSGELAKRAERRDEAEKALKAATEAGDEAQIEKFNRRLVRVTKEHSREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L K I + +L+G D+ ++G+G A++ ++++ +I IL I
Sbjct: 208 SYDKVLQGLELTSKEFIDLCILMGCDY-CESIRGVGPKRAIELIKSYR--DIETILENID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TNKYAVPENW 274
>gi|198423155|ref|XP_002121987.1| PREDICTED: similar to Excision repair cross-complementing rodent
repair deficiency, complementation group 5 [Ciona
intestinalis]
Length = 948
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 16/162 (9%)
Query: 104 AEEGILVERNQTFLKCVQE--------CVELLELFGMPVLKAKGEAEALCAQLNSEGYVD 155
AE+ L+ER ++ + +E C ELL LFG+P + + EAEA CA L+
Sbjct: 600 AEDAALLERIKSASRAAREVSDVATMECQELLRLFGIPFVLSPQEAEAQCAFLDMNDLTM 659
Query: 156 ACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHD 215
IT DSD +LFG K V K + ++P CY + DI+A LGL R H I ++L G+D+
Sbjct: 660 GTITEDSDVWLFGGKNVYKDMFDRKRDPT-CYSLLDIQAELGLLRSHFINIALCSGSDY- 717
Query: 216 LNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGD 257
G++G+G AL+ ++ F + + +++ Q+W D
Sbjct: 718 TEGLEGVGPVRALEIMKEFPGEGMESLVK------FKQWWDD 753
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV G W LL+ R L L K +AVD+S W+ ++ S HL +T F
Sbjct: 1 MGVTG-LWKLLEGNGRQVELHTLEGKILAVDISIWLNMAIKGMRGQSANNAHL-ITLFHR 58
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
I FG PVFV DG LK + R + ++ A E +L Q +LK
Sbjct: 59 ICKLLYFGIKPVFVFDGGAPALKQRTLKERRQKKDMNIRQSKNASEKVL----QNYLK 112
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMV-ESGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQ----ECVELLEL 129
P LKS R R L A EE + + ++ +K Q EC +LL L
Sbjct: 88 KPPQLKSGELAKRTERRAEAEKHLQEAQEAGEENNIEKYSKRLVKVTQQHNDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L+A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLEAPGEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ I LGL + + + +L+G D+ ++GIG A++ ++ I I+ +I
Sbjct: 208 HLNRILQDLGLTWEQFVDLCILLGCDY-CESIRGIGPKRAVELIKEHK--TIEKIVQQID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TKKYPLPENW 274
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 102 PVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
P + I + +N+ + Q LLELFG+P L A EAE+ CA +N +G A I+ D
Sbjct: 463 PEYTDKIKLTQNKMYYDDTQA---LLELFGVPYLIAPSEAESQCAYMNKKGDCYAVISDD 519
Query: 162 SDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
SDA +FGA+C++K + FE Y I LG+ RK L ++++ G D+ NGV+G
Sbjct: 520 SDALVFGARCLLKNFYNDN--VFELYTAERIRKELGIGRKQLALIAVICGCDY-TNGVRG 576
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCS 281
IG+ AL+ ++ + + E L+ D S E A S + K +H +
Sbjct: 577 IGVVNALEVIKAYPKFEDLHEFKHWATSDC--------SVESATSDECQLRSEYKKAHIN 628
Query: 282 FCGHPGTKRAHFKFSCEY 299
+ R H+ FS ++
Sbjct: 629 Y-------RVHWTFSSDF 639
>gi|324508870|gb|ADY43740.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 524
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 113/246 (45%), Gaps = 26/246 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI--VQHETAIKKNSVPKPHLRLTFF 58
MGV G W+ ++ Y + + LR+KR+AVD W+ V + ++ KPHL +
Sbjct: 1 MGVTG-MWEYMQKYVQPLDISSLRNKRIAVDGHIWLCEVMRGSVAHSSTARKPHLSTFYN 59
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE-----GILVERN 113
R +L K G P+ V D +AR D +P+ ++ GI
Sbjct: 60 RCRSLIEK-GIEPIVVFDAVDD-------IARQ-----DMQNIPLKKDRKRGTGIWAPEL 106
Query: 114 QT-FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
+T + ++E LL G+ + +K E EA CAQL G V CIT D D LFG +
Sbjct: 107 KTEIMTKIEEIKCLLNAMGVRWMASKLEGEAQCAQLERRGLVHGCITRDFDYILFGGNNL 166
Query: 173 VKC-IRPNTKEPFE---CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+ P K + + I L + R LIAMSL++G D+ G+ G+G TAL
Sbjct: 167 YQVEFGPGGKSIHDNILLLSMDYIGEELCVSRSCLIAMSLMMGCDYYQKGIPGVGAVTAL 226
Query: 229 QFVQNF 234
+ V F
Sbjct: 227 EIVSEF 232
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 122/278 (43%), Gaps = 27/278 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNSV--------P 49
MG+ G + L P+A EG + ++VA+D S + Q A++
Sbjct: 1 MGIKGLSQLIADLAPFAVKEGEIKNFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
HL TF+RTI L G PV+V DG P LKS R + L A E +
Sbjct: 61 TSHLMGTFYRTIRLLEN-GIKPVYVFDGKPPDLKSGELTKRAEKREEAQKALDKATEAGV 119
Query: 110 VER----NQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
E N+ +K + E ELL+L G+P + A EAEA CA L G V A T D
Sbjct: 120 TEDIDKFNRRLVKVTKQHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATED 179
Query: 162 SDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
DA FG+ +++ K P + + I GL L R I + +L+G D+ + +
Sbjct: 180 MDALTFGSNILLRHLTFSEARKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDY-CDSI 238
Query: 220 QGIGLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
+GIG A++ + I IL + +P+ W
Sbjct: 239 RGIGPKKAVELINKHR--TIEKILENLDTKKYVVPENW 274
>gi|310800740|gb|EFQ35633.1| XPG domain-containing protein [Glomerella graminicola M1.001]
Length = 394
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLTNESGETTSHLMGLFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF----LKCVQE----CVELLEL 129
P LKS RF R L A+E E + F ++ +E C +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATVGLEEAKETGTAEDVEKFSRRTVRVTREHNADCQKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEARKEPIQEV 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
I + AGLG++RK + +L+G D+ L+ + IG TAL+ ++ + E L
Sbjct: 208 HIDKVLAGLGMERKQFVDFCILLGCDY-LDPIPKIGPSTALKLIREHGDLETL 259
>gi|170117214|ref|XP_001889795.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635261|gb|EDQ99571.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 533
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 108/240 (45%), Gaps = 36/240 (15%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPK------PHLRLTFFRTINLFAKFGAFPVFVVDGTPS 80
RV VD+S WI Q + A+ +S+P+ P LR+ FFR +L A+ P+F+ DG
Sbjct: 39 RVGVDVSVWICQAQAAV--HSMPRTQQGENPALRIIFFRICHLLAQ-SIQPIFIADGPNR 95
Query: 81 PLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGE 140
P R R + P E + + VQE G P+ A GE
Sbjct: 96 P--------RVKRGVNVRADKPHWMEAYVKD-------FVQEA-------GCPMYHAPGE 133
Query: 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE--CYCISD-IEAGLG 197
AEA AQL + G + A +T D D FLFG ++K PN K + Y SD I+A
Sbjct: 134 AEAELAQLTAHGLIKAVLTTDFDVFLFGGTYMIK--PPNVKTDGDRITYYTSDGIQAQTS 191
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGD 257
L LI +++L G D+D G+ G GL A Q Q D + + D+ + D
Sbjct: 192 LTCAKLIFIAILSGGDYDQVGLPGCGLKIAHQLAQGELADLLFTAATTLPQHDLEDFLRD 251
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 128/292 (43%), Gaps = 28/292 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNS---------V 48
MG+ G K P + EG +D + +A+D S + Q +A++ +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG 107
H+ TF+RTI L G PV+V DG P +K R + L A EEG
Sbjct: 61 TTSHIIGTFYRTIKLIES-GIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEG 119
Query: 108 ------ILVERNQTFLK-CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
L++R K E +LL+L G+P ++A EAE CA L G A T
Sbjct: 120 DKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGSCAALVKAGKCYATATE 179
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
D DA G++ VV+ N K+P Y +S I G + I + +L+G D+
Sbjct: 180 DMDALTLGSEHVVRKFSASDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGCDY-CET 238
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKIGNG-DIPQYWGDIKSTEEAVSHSD 269
++G+G TA + +Q + I NIL + + +P+ W K E H D
Sbjct: 239 IKGVGPITAFELIQQYK--SIENILQHLSDKYKVPENW-KYKEARELFLHPD 287
>gi|402080846|gb|EJT75991.1| DNA-repair protein rad2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 394
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 26/252 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ N HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSNGEVLTNEDGQTTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R+ R L A E E + F + +EC LL+L
Sbjct: 88 APPKLKSGELARRYQRKQEALEGLEEARETGTAEEVEKFSRRTVHVTREHNEECRRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 148 MGIPYIVAPTEAEAQCAALARAGKVFAAASEDMDTLCFDSPVLLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ + GL ++RK + + +L+G D+ L+ + +G TAL+ ++ E I+ K+
Sbjct: 208 HVDKVLEGLNMERKQFVDLCILLGCDY-LDPIPKVGPTTALKLIREHGSLE--TIVEKMK 264
Query: 248 NGD----IPQYW 255
GD +P W
Sbjct: 265 KGDLKYTVPDDW 276
>gi|393245000|gb|EJD52511.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 564
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 114/268 (42%), Gaps = 48/268 (17%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFL-------------RDKRVAVDLSYWIVQHET----AI 43
MGV G WD+L+P AR + L L R R+ +D S W + A
Sbjct: 1 MGVPG-LWDVLRPAARTQSLSQLAVTQGFEGNTGGHRGFRIGIDASIWFFHAQVFNGKAF 59
Query: 44 KKNSVPK-PHLRLTFFRTINLFAKFGAFPVFVVDGTPSP-LKSQARLARFYRSTIDASTL 101
K V + P +R FFR L + P+FV DG P K R+++ S +
Sbjct: 60 SKGDVGENPEIRTLFFRCAKLMS-LPLLPLFVFDGPQRPKWKRGKRISKHKDSWL----- 113
Query: 102 PVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
V +++ FG + A GEAEA A LN G +DA +T D
Sbjct: 114 ------------------VGAMQNIIQAFGYECIHAHGEAEAELAYLNRIGVIDAVLTDD 155
Query: 162 SDAFLFGAKCVV-KCIRPNTKEPFECYCISDIEA--GLGLKRKHLIAMSLLIGNDHDLNG 218
D FLFGA ++ KC+ + CY D+ + L + LI + L+ G D+ G
Sbjct: 156 VDTFLFGATMIIRKCVVVDGNH-VNCYKADDLRTHEDIMLTQGGLILIGLMRGGDYHQAG 214
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKI 246
VQGIG+ A + D+++ + +
Sbjct: 215 VQGIGVGIARGLAECGFGDQLVEAVRTL 242
>gi|195431204|ref|XP_002063637.1| GK21315 [Drosophila willistoni]
gi|317374897|sp|B4MR84.1|FEN1_DROWI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194159722|gb|EDW74623.1| GK21315 [Drosophila willistoni]
Length = 388
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 20/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LKS R R L A +E + + N+ ++ +E ELL+L
Sbjct: 88 KPPDLKSGELAKRAERREEAEKALKAATEAGDEAEIEKFNRRLVRVTKEHAREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSSKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L ++ I + +L+G D+ ++GIG A++ + ++ + E +
Sbjct: 208 TYEKLLQGLELNQREFIDLCILLGCDY-CESIKGIGPKRAIELINSYRDIETILDNLDTS 266
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 267 KYTVPENW 274
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 30/253 (11%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++ H+ TF+RTI L G PV+V DG
Sbjct: 29 RKIAIDASMSLYQFLIAVRSEGAQLTSADGETTSHIMGTFYRTIRLLEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEE-----GI------LVERNQTFLKCVQECVEL 126
P +KS R R +L AEE GI LV+ T EC EL
Sbjct: 88 KPPQMKSSELEKRADRRQEAQKSLEKAEEAGDATGIDKFSKRLVKVTSTH---TTECKEL 144
Query: 127 LELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPF 184
L+L G+P ++A EAEA CA + G V A T D DA FG+ +++ K P
Sbjct: 145 LKLMGVPFVEAPCEAEAQCAAMVKAGKVYATATEDMDALTFGSPVLLRHMTFSEARKMPI 204
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILH 244
+ + + + + + R I + +L+G D+ N ++G+G A++ ++ + E NI+
Sbjct: 205 QEFQLDSVLETMEMSRDEFIDLCILLGCDY-CNSIKGVGPKRAIELMRQYKSLE--NIIE 261
Query: 245 KIGNG--DIPQYW 255
+ +P+ W
Sbjct: 262 NLDTKKYQVPEDW 274
>gi|108706747|gb|ABF94542.1| XPG I-region family protein, expressed [Oryza sativa Japonica
Group]
Length = 1477
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 22/140 (15%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K
Sbjct: 859 ECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNIFDDRK 918
Query: 182 ---------EPFECYCIS------------DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
+ +E + ++ DIE+ LGL R+ LI M++L+G+D+ G+
Sbjct: 919 YVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY-TEGIS 977
Query: 221 GIGLDTALQFVQNFSEDEIL 240
GIG+ A++ F E++ L
Sbjct: 978 GIGIVNAIEVAHAFPEEDGL 997
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L KR+AVD S W+VQ A+ K + + HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I A PVFV DG LK
Sbjct: 59 LRRICKLLFLRARPVFVFDGATPALK 84
>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
Length = 383
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 15/229 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL+ F+RTI L +K G P++V DG P LKS R + +L A E E
Sbjct: 64 HLQGMFYRTIKLISK-GIKPIYVFDGKPPTLKSGELAKRQAKRKEATDSLKEATEVGTSE 122
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
Q F K +EC++LL L G+PV+KA EAEA CA++ G A + D D
Sbjct: 123 DVQKFAKRTISVSRKQNEECIKLLTLMGVPVVKAPCEAEAQCAEIVKSGKAWATGSEDMD 182
Query: 164 AFLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
+ G+ +++ + K P + + + GLGL + I + +L+G D+ + ++G
Sbjct: 183 SLTLGSTVLLRRLFFSEAKKMPILEFELPSVLEGLGLTYEEFIDLGILLGCDY-CDSIKG 241
Query: 222 IGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGDIKSTEEAVSHSD 269
IG A + +Q +EI+ L K IP+++ + E H D
Sbjct: 242 IGPKRAFELIQKHKTLEEIIKHLDK-SKYPIPEFF-PYQEVRELFKHPD 288
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 103/232 (44%), Gaps = 20/232 (8%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFP 71
L L +++A+D S + Q A++ HL TF+RTI L G P
Sbjct: 23 LKHLFGRKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGTFYRTIRLVEN-GIKP 81
Query: 72 VFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER----NQTFLKCV----QEC 123
V+V DG P LK R R L AEE VE N+ +K +E
Sbjct: 82 VYVFDGKPPTLKGGELAKRAERREEAQKQLQAAEEAGNVEDVDKFNRRLVKVTKQHGEEA 141
Query: 124 VELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTK 181
+LL L G+P + A EAEA CA + G V A T D DA FG +++ K
Sbjct: 142 KQLLTLMGIPFIDAPCEAEAQCAAMVKSGKVYATATEDMDALTFGCNVLLRRLTFSEARK 201
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
P + + GLGL R I + +++G D+ ++G+G A++ ++N
Sbjct: 202 MPIQEIQYDKVLNGLGLTRDEFIDLCIMLGCDY-TTSIKGVGPKRAIELIKN 252
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++C ELL++FG+PV++A EAEA CA L G V +T DSD FLFG V K +
Sbjct: 690 AEDCEELLKMFGIPVVRAPREAEAQCAALEQAGLVQGVVTDDSDIFLFGGNVVYKNLFSQ 749
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDE 238
+ E Y IE+ L L R+ LI ++L G+D+ NG++ +G A + + F S
Sbjct: 750 DHQ-CEMYAAKTIESNLKLSREDLIGFAMLTGSDY-TNGIENVGPVMACEIIAEFRSGKS 807
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIK----------SSHCSFCGHPGT 288
+L L + + W + A+ + IK + H ++C HP
Sbjct: 808 VLKTLTEF------KKWWSLAQRGAALPKNSIRTRFIKLVLDDRFPSEAVHSAYC-HPTV 860
Query: 289 KRAHFKFS 296
+R KFS
Sbjct: 861 ERVKEKFS 868
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV G W LL P + L+ L K +A+D+S W+ Q + + V HL F
Sbjct: 1 MGVVG-LWQLLDPTGKPIRLETLEGKVLAIDISIWLNQLIKGYRTSGGAGVDNAHLVGLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
R L + PVFV DG LK Q +R R
Sbjct: 60 QRVCKLL-HYKIKPVFVFDGEAPALKYQTLASRKRR 94
>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1516
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL FG+P +++ EAEA C+ LN++ Y DA I+ DSD +F K V+K N K+ E
Sbjct: 1218 LLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKNFF-NKKKTVE 1276
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y IE LGL ++ LI +SLL G D+ + GV GIG+ AL+ ++ F E L IL
Sbjct: 1277 VYEKKAIEEKLGLYQEELINISLLCGCDYTI-GVHGIGIVNALEIIKAFPNFEDLKILKD 1335
Query: 246 I 246
I
Sbjct: 1336 I 1336
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 29/242 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L ++VA+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LESLYGRKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLKC-------VQE 122
P +V DG P K + R R + +G + E + + +++
Sbjct: 75 PAYVFDGKPPEFKKRELEKRKEAREEAEIKWKEALAKGDIEEARKYAQRATRVNEMLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+PV++A E EA A + S+G V A + D D+ LFGA +V+ + K
Sbjct: 135 AKKLLELMGIPVIQAPSEGEAQAAYMASKGKVYASASQDYDSLLFGAPRLVRNLTITGKR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ + L L R+ LI +++L+G D++ G++GIG AL+ V
Sbjct: 195 KLPGKNIYVEIKPELIVLDEVLSSLKLTREKLIELAILVGTDYNPGGIKGIGPKKALEIV 254
Query: 232 QN 233
++
Sbjct: 255 RH 256
>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
gi|317374893|sp|B5DUR8.1|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 20/273 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAE 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCIRPNT--KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGDIPQYW 255
G A++ + N+ + E + +P+ W
Sbjct: 242 GPKRAIELINNYRDIETILDNLDTSKYTVPENW 274
>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
gi|317374892|sp|B4GIM3.1|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
Length = 386
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 119/273 (43%), Gaps = 20/273 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAE 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGDIPQYW 255
G A++ + N+ + E + +P+ W
Sbjct: 242 GPKRAIELINNYRDIETILDNLDTSKYTVPENW 274
>gi|383863581|ref|XP_003707258.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Megachile rotundata]
Length = 1072
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P + A EAEA CA L D IT DSD +LFG +CV K N K
Sbjct: 704 EAQELLRLFGIPYIVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQCVYKNFFNNNK 763
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ + +C+ DIE L R +I ++LL+G+D+ + G+ GIG TAL+ + F
Sbjct: 764 KVLQ-FCLGDIEHHFKLTRNEMIQLALLVGSDYTV-GLTGIGPVTALEILAAF 814
>gi|337283806|ref|YP_004623280.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
gi|334899740|gb|AEH24008.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
Length = 341
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 29/242 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K+VA+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLYGKKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQE 122
P +V DG P K + R A E +E + + + V++
Sbjct: 75 PAYVFDGKPPAFKKKELEKRREAREEAEERWREALERGNIEEARKYAQRATRVNEALVED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+PV++A E EA A + ++G V A + D D+ LFGA +V+ + K
Sbjct: 135 AKKLLELMGIPVIQAPSEGEAQAAYIAAKGAVYASASQDYDSLLFGAPRLVRNLTITGKR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ L + R+ LI +++L+G D++ GV+GIG AL+ V
Sbjct: 195 KLPGKDVYVDVKPELIVLEEVLKALKIDREKLIELAILVGTDYNPGGVKGIGPKKALEIV 254
Query: 232 QN 233
++
Sbjct: 255 RH 256
>gi|170291015|ref|YP_001737831.1| flap endonuclease-1 [Candidatus Korarchaeum cryptofilum OPF8]
gi|226700953|sp|B1L6R9.1|FEN_KORCO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170175095|gb|ACB08148.1| XPG I domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 342
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF---------YRSTIDASTLPVAEEG 107
F+RT N F K G P++V DG KS+A R ++ ++ L A +
Sbjct: 63 FYRTAN-FLKEGIIPIYVFDGEKPSFKSRAIEERVRAREEAELKWKEALEIGDLEEARKY 121
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
N T V++C +L+L G+P+++A E EA A + +G V A + D D+ LF
Sbjct: 122 AQAALNITG-DIVEDCKTILKLMGVPIVQAPSEGEAQAAHMAMKGDVWATASQDYDSLLF 180
Query: 168 GAKCVVKCIRPNTKEPF---ECYC-----ISDIEAGL---GLKRKHLIAMSLLIGNDHDL 216
GA +++ + K E Y + ++E+ L G+ R+ LI + +L+G D++L
Sbjct: 181 GAPRLIRNLTITGKRKLPGKEVYVDINPELIELESVLKRNGISREQLIMIGILVGTDYNL 240
Query: 217 NGVQGIGLDTALQFVQNFSEDEIL 240
GV+GIG+ AL+ V+ + E L
Sbjct: 241 GGVKGIGVKRALELVKKYKRPEDL 264
>gi|195488056|ref|XP_002092153.1| GE14031 [Drosophila yakuba]
gi|317374898|sp|B4P5U9.1|FEN1_DROYA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194178254|gb|EDW91865.1| GE14031 [Drosophila yakuba]
Length = 387
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LKS R R L A ++ + + N+ ++ +E ELL L
Sbjct: 88 KPPDLKSGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHANEAKELLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL + + I + +L+G D+ ++GIG A++ + N+ +I IL +
Sbjct: 208 SYEKLLEGLSINSREFIDLCILLGCDY-CESIKGIGPKRAIELINNYR--DIETILDNLD 264
Query: 248 NGD--IPQYW 255
+ +P+ W
Sbjct: 265 SSKYTVPENW 274
>gi|350287839|gb|EGZ69075.1| DNA-repair protein rad2, partial [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 15/217 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R L A+E E
Sbjct: 59 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGTAE 117
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 118 DVEKFSRRTVRVTREHNAECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMD 177
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + + + GLG++RK I + +L+G D+ L+ +
Sbjct: 178 TLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDY-LDPIPK 236
Query: 222 IGLDTALQFVQNFSEDEILNILHKI---GNGDIPQYW 255
+G TAL+ ++ E + K G IP+ W
Sbjct: 237 VGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDW 273
>gi|145352686|ref|XP_001420669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580904|gb|ABO98962.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 271
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 121/293 (41%), Gaps = 62/293 (21%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++ ELL LFG+P + A EAEA CA LN VDA IT DSD FLFGA V + +
Sbjct: 3 RDVQELLTLFGIPYIIAPQEAEAQCAYLNQHKLVDAVITDDSDVFLFGASHVYRNFF-SE 61
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
K+ E Y I+ LGL R I ++LL+G+D+ GV G+G+ AL+ V F
Sbjct: 62 KKYCEVYTADRIKRELGLDRDRFIQLALLLGSDY-TEGVGGVGIVNALEIVSVFKG---- 116
Query: 241 NILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYC 300
N++ D + + + EE + +P P K S E
Sbjct: 117 NVM------DASKAFREWIDMEELTMVPERLLP-----------SPS------KTSAESA 153
Query: 301 INDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMY 360
+D KEK + ++W + N+P+ E+V Y
Sbjct: 154 TDDAITAAF-----------------KEKHRSLKKSW--------EVPANYPSLEVVKAY 188
Query: 361 LCENNGTFTATDGP--SISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST 411
+ + D + WG P +ML F + W Q +LPM+ +
Sbjct: 189 ------QYPSVDQSEETFEWGKPDLDMLRLFCIKTLSWTRDAADQILLPMMKS 235
>gi|449298336|gb|EMC94351.1| hypothetical protein BAUCODRAFT_73871 [Baudoinia compniacensis UAMH
10762]
Length = 1348
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V EC +LL LFG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 979 MVTECQQLLRLFGLPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDCFLFGGTRIYKNMF- 1037
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY SD+E L R+ LIA++ L+G+D+ G+ +G TAL+ + F
Sbjct: 1038 NQAKFVECYLSSDLEKEFDLTRQKLIAVAHLLGSDY-TEGLPSVGPVTALEILGEF 1092
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P AR ++ L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I +G PVFV DG LK
Sbjct: 59 FRRICKLLFYGIKPVFVFDGGAPALK 84
>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
Length = 385
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 125/277 (45%), Gaps = 25/277 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNSV--------P 49
MG+ G + + P+A EG + ++VA+D S + Q A++
Sbjct: 1 MGIKGLSQLIADVAPFAVKEGEIKTFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
HL TF+RTI L G PV+V DG P LKS R R L A E
Sbjct: 61 TSHLMGTFYRTIRLLEN-GIKPVYVFDGKPPELKSGELNKRAERREEAQKALDKATEAGA 119
Query: 110 VER----NQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
VE N+ +K + E ELL L G+P ++A EAEA CA L G V A T D
Sbjct: 120 VEDIEKFNRRLVKVTKQHANEAKELLRLMGVPYVEAPCEAEAQCAALVKAGKVYATATED 179
Query: 162 SDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
DA FG+ +++ K P + + + G L I M +L+G D+ + +
Sbjct: 180 MDALTFGSNILLRHLTFSEARKMPVQEFHYEKVLKGFELTADEFIDMCILLGCDY-CDTI 238
Query: 220 QGIGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYW 255
+GIG A++ + ++ S ++IL L K +P+ W
Sbjct: 239 RGIGPKKAIELINKHRSIEQILEHLDK-SKYVVPEDW 274
>gi|429854713|gb|ELA29705.1| DNA-repair protein rad2 [Colletotrichum gloeosporioides Nara gc5]
Length = 394
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 23/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGLFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEANENLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPFIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPIQEV 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHKI 246
I + GLG++R+ + + +L+G D+ L+ + +G TAL+ ++ D+++ + +
Sbjct: 208 HIDKVLEGLGMEREQFVDLCILLGCDY-LDPIPKVGPSTALKLIREHGTLDKLVEAIKED 266
Query: 247 GNG--DIPQYW 255
G IP+ W
Sbjct: 267 PKGKYQIPEDW 277
>gi|170036109|ref|XP_001845908.1| DNA-repair protein complementing XP-G cells [Culex
quinquefasciatus]
gi|167878599|gb|EDS41982.1| DNA-repair protein complementing XP-G cells [Culex
quinquefasciatus]
Length = 1217
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
Q+C++LL+LFG+P + A EAEA CA LN D IT DSD +LFG K V K
Sbjct: 838 QDCMDLLKLFGVPFIVAPMEAEAQCAFLNQIELTDGTITDDSDIWLFGGKTVYKNFFNQQ 897
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
K E + I IE + RK LI ++LL+G+D+ G+ GIG TAL+ + +F
Sbjct: 898 KLVME-FTIEGIERAFQMDRKKLIQLALLVGSDY-TTGISGIGAVTALEVLASF 949
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W L++ + L+ L +K +AVD+S W+ Q K +++P H+ F
Sbjct: 1 MGVTG-LWKLVEQSGKPVPLETLENKVLAVDISIWLHQVTKGFQDSKGSALPNAHVLGLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
R L + PVFV DG LK Q R
Sbjct: 60 HRLCKLMY-YRIRPVFVFDGGVPALKRQTIAKR 91
>gi|336467513|gb|EGO55677.1| DNA-repair protein rad2 [Neurospora tetrasperma FGSC 2508]
Length = 396
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 15/217 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R L A+E E
Sbjct: 65 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGTAE 123
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 124 DVEKFSRRTVRVTREHNAECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMD 183
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + + + GLG++RK I + +L+G D+ L+ +
Sbjct: 184 TLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDY-LDPIPK 242
Query: 222 IGLDTALQFVQNFSEDEILNILHKI---GNGDIPQYW 255
+G TAL+ ++ E + K G IP+ W
Sbjct: 243 VGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDW 279
>gi|164426998|ref|XP_001728355.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
gi|157071561|gb|EDO65264.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
Length = 396
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 100/217 (46%), Gaps = 15/217 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R L A+E E
Sbjct: 65 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKETGTAE 123
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 124 DVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMD 183
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + + + GLG++RK I + +L+G D+ L+ +
Sbjct: 184 TLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGCDY-LDPIPK 242
Query: 222 IGLDTALQFVQNFSEDEILNILHKI---GNGDIPQYW 255
+G TAL+ ++ E + K G IP+ W
Sbjct: 243 VGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDW 279
>gi|380479712|emb|CCF42855.1| XPG domain-containing protein [Colletotrichum higginsianum]
Length = 394
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLTNESGETTSHLMGLFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF----LKCVQE----CVELLEL 129
P LKS RF R L A+E E + F ++ +E C +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEEVEKFSRRTVRVTREHNADCQKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPFIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPIQEV 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
I + GLG++RK + +L+G D+ L+ + +G TAL+ ++ + E L
Sbjct: 208 HIDKVLEGLGMERKQFVDFCILLGCDY-LDPIPKVGPSTALKLIREHGDLETL 259
>gi|256810959|ref|YP_003128328.1| flap endonuclease-1 [Methanocaldococcus fervens AG86]
gi|256794159|gb|ACV24828.1| flap structure-specific endonuclease [Methanocaldococcus fervens
AG86]
Length = 326
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 119/237 (50%), Gaps = 23/237 (9%)
Query: 23 LRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLRL--------TFFRTINLFAKFGAFPVF 73
L+ K+VA+D + Q T+I+ K+ P + + F++TI+L P++
Sbjct: 19 LKGKKVAIDGMNALYQFLTSIRLKDGSPLRNRKGEITSAYNGVFYKTIHLLEN-DITPIW 77
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVAE--------EGILVERNQTFL--KCVQEC 123
V DG P LK + R +F + + + L + E E + ++L K V+ C
Sbjct: 78 VFDGEPPKLKEKTR--KFRKEMKEKAELKMKEAIEKEDFEEAAKYAKRVSYLTPKIVENC 135
Query: 124 VELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP 183
LL L G+P ++A E EA + + +G V A ++ D DA L+GA VV+ + TKE
Sbjct: 136 KYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNL-TTTKEM 194
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
E ++++ L + LI +++ IG D++ GV+GIG A + V++ E+L
Sbjct: 195 PELIELNEVLEDLRISLDDLIDIAIFIGTDYNPGGVKGIGFKRAYELVRSGVAKEVL 251
>gi|384245741|gb|EIE19234.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 384
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 23/247 (9%)
Query: 26 KRVAVDLSYWIVQ---------HETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VAVD S I Q +T ++ HL+ FFRT + + G PV+V D
Sbjct: 29 RKVAVDASMHIYQFLVVVGRTGDQTLTSESGDVTSHLQGMFFRTAKML-EVGMKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTL--PVAEEGILVERNQTFLKCV-------QECVELL 127
G P LK + L+R DA+ L E G + + + V +EC LL
Sbjct: 88 GKPPALKKE-ELSRRVERRGDATDLLTEAKETGADADIEKYSKRTVRVTPQHNEECRRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFE 185
L G+PV++A EAEA CAQ+ EG V + D D+ F K + ++P T+ P
Sbjct: 147 RLMGVPVVEAPSEAEAQCAQMCKEGLVYGIASEDMDSLTFATPKLIRNLMKPQTQNVPIN 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y + GL L + + +L G D+ ++GIG TAL+ +Q E + +
Sbjct: 207 EYDYDKVLEGLNLTSDQFVDLCILCGCDY-CGTIKGIGGVTALKLIQKHKRLEDVLASME 265
Query: 246 IGNGDIP 252
G +IP
Sbjct: 266 GGRYEIP 272
>gi|326429821|gb|EGD75391.1| flap endonuclease-1 [Salpingoeca sp. ATCC 50818]
Length = 380
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRSEGSNLTNAEGETTSHLSGIFYRTIRMVNN-GVKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCVQ-------ECVELLEL 129
P LKS R R S L A EEG+ + + + V+ +C ELL+L
Sbjct: 88 KPPTLKSGELAKRTERRKEAQSKLEAATEEGVQADMEKFTRRLVKVTPEHNRQCQELLDL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA+L G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYIVAPCEAEAQCAELVKAGKVFATATEDMDALTFGTSVLLRHMTFSEARKMPIQQF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ + GL L + I + +L+G D+ + + GIG A + ++ S + IL + K
Sbjct: 208 ELKKVLEGLDLSQDEFIDLCILLGCDY-CDKIGGIGRVRAYSLIKEHHSIEAILEAIKK 265
>gi|392595001|gb|EIW84325.1| hypothetical protein CONPUDRAFT_100293 [Coniophora puteana RWD-64-598
SS2]
Length = 1485
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 83/143 (58%), Gaps = 10/143 (6%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + +L LFG+P + A EAEA CA+L G V+ IT DSD FLFG V K +
Sbjct: 952 QMISQIMLMLRLFGIPYITAPMEAEAQCAELVQLGLVEGVITDDSDVFLFGGLRVFKNMF 1011
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + EC+ +SD+ LGL+R L+ ++ L+G+D+ + G+ G+G A++ ++ F
Sbjct: 1012 -NQSKTVECFLLSDLARELGLERDTLVRLAYLLGSDY-VEGLPGVGPVVAMELLKEFPG- 1068
Query: 238 EILNILHKIGNGDIPQYWGDIKS 260
+ LHK + +WG ++S
Sbjct: 1069 --ADGLHKFRD-----WWGKVQS 1084
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W L++P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVK-SLWSLVEPVGRPVPLETVEGKAMAIDSSIWIYQFQATMRDRDGRGLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR-FYRSTIDASTLPVAE 105
R I +G PVFV DG +K + R +S AS VAE
Sbjct: 59 LRRICKLLFYGVRPVFVFDGGAPAMKRGTIMERKRKKSGAAASHAKVAE 107
>gi|146302997|ref|YP_001190313.1| flap endonuclease-1 [Metallosphaera sedula DSM 5348]
gi|145701247|gb|ABP94389.1| flap endonuclease 1 [Metallosphaera sedula DSM 5348]
Length = 300
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 20/206 (9%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+NL + G P++V DG P LK+Q R L A+E VE
Sbjct: 10 HLNGVFYRTVNLLEE-GIIPIYVFDGKPPELKAQELENRRKMKEEAEKKLEKAKESGKVE 68
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ + + +E ELLE G+P ++A E EA A LN++G A + D D
Sbjct: 69 EMRKYSQMTSRLTTDMAKESKELLEYMGVPTVQAPSEGEAEAAYLNAKGITYASASQDYD 128
Query: 164 AFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGN 212
+ LFGA+ +++ + + K E + + L + R+ LI +++L+G
Sbjct: 129 SLLFGAEKLIRNLTISGKRKLPNKDVYVEVKPELIETASLLKKLEITREQLIDIAILVGT 188
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDE 238
D++ +GV+GIG A + ++ + + E
Sbjct: 189 DYNPDGVRGIGPKKAYKLIKTYKKIE 214
>gi|385304582|gb|EIF48594.1| single-stranded dna cleaves single-stranded dna during nucleotide
excision repair [Dekkera bruxellensis AWRI1499]
Length = 577
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + +LL FG+P + A EAEA CA+L VD +T DSD FLFG + K +
Sbjct: 366 MILDVQDLLSRFGIPFITAPMEAEAQCAELFGLKLVDGIVTDDSDCFLFGGSIIYKNMF- 424
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N K ECY + DI +GL RK +I ++L++G+D+ +G++G+G TA++ + F +
Sbjct: 425 NEKNFVECYQLEDIARDMGLTRKQMIDLALMLGSDY-TSGLKGVGKVTAVEILSEFGD 481
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 103 VAEEGILVERNQTFLKCVQECVE--------LLELFGMPVLKAKGEAEALCAQLNSEGYV 154
+ EE +L E+ Q + E E LL+ FG+P + A EAEA CA+L G V
Sbjct: 843 ITEEHLLQEKLQKAKRDSDEVTETMIYDVQELLKRFGIPFITAPMEAEAQCAELLKIGLV 902
Query: 155 DACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
D +T DSD FLFG V K + N K+ ECY DI +GL + +LI ++LL+G+D+
Sbjct: 903 DGIVTDDSDCFLFGGDKVYKNMF-NQKQFVECYFKDDIATKIGLSQDNLIELALLLGSDY 961
Query: 215 DLNGVQGIGLDTALQFVQNF 234
G++G+G A++ + F
Sbjct: 962 -TEGIKGVGPVLAMEILAEF 980
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P AR L+ L K++AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVQS-LWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALQSSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG P+FV DG LK Q R R
Sbjct: 59 FRRICKLLFFGIRPIFVFDGGVPVLKKQTIAERKNR 94
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 21/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + A++ ++ HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMSLYSFLVAVRSGGEQLMNESGETTSHLMGMFYRTLRIVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTI------DASTLPVAEEGILVERNQTFL--KCVQECVELLEL 129
P LKS RF R + DA + AEE R + + QE LL+L
Sbjct: 88 APPKLKSGELAKRFQRKSEAQEAHEDAKEIGTAEEVEKFSRRTVRVTREHNQEAQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA + G V A + D D F + +++ KEP +
Sbjct: 148 MGVPYIIAPTEAEAQCAVIARAGKVYAAASEDMDTLTFASPVLLRKLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNILHKI 246
+ + GL + + I + +L+G D+ L+ V+GIG AL ++ E ++ ++ K
Sbjct: 208 HLDRVLEGLDMDQNQFIDLCILLGCDY-LDPVKGIGPKNALALIKEHKNLEGVVAMIEKT 266
Query: 247 GNGDIPQYW 255
G +P+ W
Sbjct: 267 GKYTLPEDW 275
>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|317374915|sp|C7Z125.1|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 395
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 21/239 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLCFNSPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHK 245
+ + GLG++RK + + +L+G D+ L+ + +G TAL+ +++ S ++I+ + K
Sbjct: 208 HLEKVLEGLGMERKQFVDLCILLGCDY-LDPIPKVGPTTALKLIRDHGSLEKIVEAMEK 265
>gi|168010775|ref|XP_001758079.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690535|gb|EDQ76901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1718
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
EC ELL++FG+P + A EAEA CA L++E VD +T D D FLFG + V K I + K
Sbjct: 1049 ECQELLQMFGLPYVIAPMEAEAQCAFLDAEKLVDGVVTDDVDVFLFGGRNVYKNIFDDRK 1108
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
E Y + D+E LGL R LI M+LL+G+D+ GV GIG+ A++ V F ED+ L
Sbjct: 1109 Y-VETYYMKDVETELGLDRDKLIRMALLLGSDY-TEGVSGIGIVNAIEVVNAFDEDDGL 1165
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W+LL P R ++ L +++A+D S WI+Q A++ + + HL L F
Sbjct: 1 MGVHG-LWELLAPVGRRVSVESLGSRKLAIDASIWIIQFMKAMRDDRGDMIRNAHL-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
FR I PVFV DG LK + +AR
Sbjct: 59 FRRICKLLFLRVKPVFVFDGGTPALKRRTVIAR 91
>gi|348681509|gb|EGZ21325.1| hypothetical protein PHYSODRAFT_455731 [Phytophthora sojae]
Length = 502
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V E + LL LFG+P L + EAEA CA L G VD IT DSD F FG + V K I
Sbjct: 209 MVAEVMALLRLFGVPFLVSPMEAEAQCAALEQLGLVDGVITDDSDIFPFGGQRVYKNIFH 268
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ K E + DIE LG R+ +IA++LL+G+D+ +GV+GIG+ A + +
Sbjct: 269 HQK-FVEAFSARDIERELGFSREQIIALALLLGSDY-TDGVRGIGIVNATEIAAAY 322
>gi|340624624|ref|YP_004743077.1| flap endonuclease-1 [Methanococcus maripaludis X1]
gi|339904892|gb|AEK20334.1| flap endonuclease-1 [Methanococcus maripaludis X1]
Length = 324
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 21/247 (8%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHL 53
+G +F DL+ P L FLR+K VA+D I Q ++I+ KN
Sbjct: 1 MGVQFGDLI-PKTEI-SLKFLRNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGDITSTY 58
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR------FYRSTIDASTLPVAEEG 107
F++TI + G P++V DG LK + + R S ++A EE
Sbjct: 59 NGIFYKTIYMLEN-GMTPIWVFDGKSHELKEKTKEERRKSREGALDSYMEAKEQNNLEEM 117
Query: 108 ILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ FL K V +LLEL G+P + A E EA CA+L I+ D D+
Sbjct: 118 QKYAKRANFLDRKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNAFCVISQDYDSI 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA VVK I + K+ E + +GL + LI ++LIG D++ G++G G
Sbjct: 178 LYGADYVVKNITSSNKD-IELIELEKTLSGLNISCDQLIDAAILIGTDYNPGGLKGFGPK 236
Query: 226 TALQFVQ 232
A+ V+
Sbjct: 237 KAIDTVK 243
>gi|75775305|gb|AAI05256.1| Flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAMDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|78042574|ref|NP_001030285.1| flap endonuclease 1 [Bos taurus]
gi|61553249|gb|AAX46374.1| flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAMDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|317374918|sp|C1BM18.1|FEN1_OSMMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|225708450|gb|ACO10071.1| Flap endonuclease 1-B [Osmerus mordax]
Length = 380
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + EC +LL L
Sbjct: 88 KPPQLKSGELEKRGERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTRQHNDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYVEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
S I +GL + I + +L+G D+ ++GIG A+ + Q+ S +EIL+ + +
Sbjct: 208 HFSRILQDIGLSHEQFIDLCILLGCDY-CGTIKGIGPKRAMDLIRQHGSIEEILDNID-L 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKHPVPEDW 274
>gi|389637772|ref|XP_003716519.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
gi|317374924|sp|A4QS18.2|FEN1_MAGO7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|351642338|gb|EHA50200.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
Length = 394
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ N HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSNGEMLTNEDGQTTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R+ R L A E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELARRYQRKQEALEGLEEARETGTAEDVEKFSRRTVRVTREHNEECRQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ + GL + RK + + +L+G D+ L+ + +G TAL+ ++ E I+ K+
Sbjct: 208 HVDKVLEGLDMDRKQFVDLCILLGCDY-LDPIPKVGPSTALKLIREHGSLE--TIVEKMK 264
Query: 248 NGD----IPQYW 255
G+ +P+ W
Sbjct: 265 KGELKYTVPEDW 276
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 29/242 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L ++VA+D + Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LEGLYGRKVAIDAFNAMYQFLSTIRQRDGTPLMDSRGRITSHLSGFFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC-------VQE 122
P +V DG P K + R R + E G L E + ++ + +
Sbjct: 75 PAYVFDGKPPEFKRKEIEKRREAREKAEERWHEALERGDLEEAKKYAMRATRVNEGLIND 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+PV++A E EA A + ++ V A + D D+ LFGA +V+ + +
Sbjct: 135 AKKLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPRLVRNLTITGRR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ LG+ R+ LI M++L+G D++ G++GIG AL V
Sbjct: 195 KLPGKNAYVEVKPELVVLEEVLKELGVDREKLIEMAILVGTDYNPGGIKGIGPKKALTIV 254
Query: 232 QN 233
+
Sbjct: 255 KR 256
>gi|410974093|ref|XP_003993482.1| PREDICTED: flap endonuclease 1 [Felis catus]
Length = 380
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYSVPENW 274
>gi|170102406|ref|XP_001882419.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642791|gb|EDR07046.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 95/216 (43%), Gaps = 35/216 (16%)
Query: 28 VAVDLSYWIVQHETAIKKNSVP------KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP 81
V VD+S WI Q + + P P LR+ FFR +L A+ P+F+ DG P
Sbjct: 37 VGVDVSIWICQAQAVVHSIRGPGTREGENPALRIIFFRICHLLARC-IEPIFIFDGRSRP 95
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLK-AKGE 140
L F R S P E Q LE FG P A GE
Sbjct: 96 L--------FKRGMNVKSGKPHWME--------------QYIEGFLEDFGCPFYHVAPGE 133
Query: 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK---EPFECYCISDIEAGLG 197
AEA AQL ++G ++A IT D D FLF ++K PN K + CY DIE
Sbjct: 134 AEAELAQLTAQGLIEAVITTDFDFFLFRGTSLIK--PPNVKADGDEVICYSADDIEHDTS 191
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
L +I +++L G D+D +G+ G GL A Q +
Sbjct: 192 LTCAKMIFLAILSGRDYDEDGLPGCGLTIAHQLARG 227
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
+ + + +L LFG+P + A EAEA CA+L S G VD IT DSD FLFG V+K + N
Sbjct: 2499 ISQIMIMLRLFGIPYITAPMEAEAQCAELLSLGLVDGIITDDSDVFLFGGMRVLKNMF-N 2557
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ EC+ +SD+E LGL+R LI ++ L+G+D+ +G+ G+G A++ ++ F
Sbjct: 2558 QSKTVECFLLSDLERELGLERDKLIRLAYLLGSDYT-DGLPGVGPVVAMELLKEF 2611
Score = 42.0 bits (97), Expect = 0.88, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV W LL P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1631 MGVK-SLWSLLDPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHV-LGF 1688
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLA--RFYRSTIDASTLPVAEEGILVERNQT 115
R I +G PVFV DG +P+ +A +A + +S S VAE + + +
Sbjct: 1689 LRRICKLLFYGIKPVFVFDGG-APVLKRATIAERKKKKSGAALSHAKVAERLLAAQMRRE 1747
Query: 116 FLKCVQ 121
L VQ
Sbjct: 1748 ALNQVQ 1753
>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
Length = 1139
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ V + + +L LFG+P + A EAEA CA L S VD IT DSD FLFGA V K +
Sbjct: 761 QMVAQIMIMLRLFGIPYMTAPMEAEAQCATLVSLNLVDGVITDDSDVFLFGAARVFKNMF 820
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + EC+ +D++ LGL R LI ++ L+G+D+ G+ G+G A++ ++ F +
Sbjct: 821 -NQSKTVECFLAADLQRELGLDRGVLIRLAYLLGSDY-TEGLPGVGPVMAMELLREFPGE 878
Query: 238 EILNILHKIGNGDIPQYWGDIK 259
+ L ++WG ++
Sbjct: 879 DGLERFR--------EWWGRVQ 892
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV W LL P R L+ + K +A+D S WI Q + ++ + H+ L F
Sbjct: 1 MGVKS-LWQLLAPVGRPVQLENMEGKTMAIDSSIWIYQFQATMRDKEGRVLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST 95
R I +G PVFV DG LK R R T
Sbjct: 59 LRRITKLLFYGIKPVFVFDGGAPALKRNTLNQRRERKT 96
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMSIYQFLIAVRSDGSQLTNEAGETTSHLMGLFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L AEE E F + + +EC +LL+L
Sbjct: 88 KPPQLKSGELAKRTERREEAQKALSKAEEAGDTENIDKFSRRLVRVTKEHNEECKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P ++A EAEA CA L G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYVEAPCEAEAQCAALVKSGKVYATGTEDMDALTFGTTVMLRHLTFSEAKKMPIKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
+ ++ + GL + I + +L+G D+ + ++GIG ++ + Q+ S D+IL
Sbjct: 208 HLQNVLSEAGLSQDEFIDLCILLGCDY-CDSIKGIGPKRSVDLIRQHRSIDKIL 260
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 29/241 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L ++VA+D I Q + I+ ++ P HL F+R INL + G
Sbjct: 16 LENLYGRKVAIDAFNAIYQFLSTIRQRDGTPLMDSRGRITSHLSGLFYRNINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKS-QARLARFYRSTIDASTLPVAEEGILVERNQTFLKC-------VQE 122
P +V DG P K + R R E G L E + ++ + +
Sbjct: 75 PAYVFDGKPPEFKKKEIEKRREAREEAKEKWYEALERGNLEEAKKYAMRATRVNEGLIND 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
LLEL G+PV++A E EA A + + V A + D D+ LFGA +V+ + +
Sbjct: 135 AKRLLELMGIPVIQAPSEGEAQAAYMAARKKVYASASQDYDSLLFGAPRLVRNVTITGRR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ LG+ R+ LI M++L+G D++ G++GIG AL V
Sbjct: 195 KLPGKNVYVEVRPELIVLEEVLKELGIDREKLIEMAILVGTDYNPGGIKGIGPKKALTIV 254
Query: 232 Q 232
+
Sbjct: 255 K 255
>gi|410076602|ref|XP_003955883.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
gi|372462466|emb|CCF56748.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
Length = 988
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
++ + + + ELL FG+P + A EAEA CA+L + G VD IT DSD FLFG V
Sbjct: 721 DEVTMDMITDVQELLSRFGIPFVTAPMEAEAQCAELIALGLVDGIITDDSDVFLFGGTKV 780
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K + + K+ E Y IE LG+ RK +I ++LL+G+D+ G++G+G ++++ +
Sbjct: 781 YKNLFQD-KKYVEFYNYDTIEKSLGIDRKKMIELALLLGSDY-TTGIKGMGPVSSMEILA 838
Query: 233 NFSE 236
F +
Sbjct: 839 EFDD 842
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV +W+++ P AR L+ L+D+R+A+D S WI Q AI+ N++ H+ L F
Sbjct: 1 MGVHS-YWEIVGPTARPVRLESLQDRRMAIDASIWIYQFLKAIRDPEGNALKNSHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
FR I FG PVFV DG LK AR
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGVPLLKRNTIKAR 91
>gi|343424970|emb|CBQ68507.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Sporisorium reilianum SRZ2]
Length = 1495
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 3/124 (2%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ QE +L LFG+P + A EAEA CA+L S VD IT DSD FLFG+ + K +
Sbjct: 1006 QMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLFGSTRIYKNMF 1065
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SE 236
N K EC+ +SD++ LGL R+ L+ ++ +G+D+ +G+ G+G A++ + F E
Sbjct: 1066 NNNKI-VECFLLSDMQRELGLDREKLVRLAYYLGSDY-TDGLAGVGPVVAMELLALFPGE 1123
Query: 237 DEIL 240
D +L
Sbjct: 1124 DGLL 1127
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV G W LL+P AR ++ L KR+A+D S W+ + A++ ++ H+
Sbjct: 1 MGVQG-LWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKEGRTLSNAHILGFL 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
+R + L G PVFV DG +K + R R
Sbjct: 60 WRILKLLF-HGVRPVFVFDGGAPVMKRKTLSGRKAR 94
>gi|408381751|ref|ZP_11179299.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
gi|407815682|gb|EKF86252.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
Length = 328
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 130/265 (49%), Gaps = 30/265 (11%)
Query: 3 VGGKFWDLLKPYA-RFEGLDFLRDKRVAVDLSYWIVQHETAIKK---------NSVPKPH 52
+G KF D++ P +FE LD K VA+D + I Q ++I++ N H
Sbjct: 1 MGVKFKDIVSPEEIKFEDLD---GKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSH 57
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF---------YRSTIDASTLPV 103
+RT +L K G P++V DG S LK + + R ++ ++ L
Sbjct: 58 FSGILYRTSSLVEK-GIKPIYVFDGQSSALKKETQQKRREIKEESERRWKEALEEGRLDD 116
Query: 104 AEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
A + V ++ F + V+ +L++L G+P ++AKGE EA + + ++G + D D
Sbjct: 117 ARK-FAVRSSRMFPEIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVAQGDAWCVASQDYD 175
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
LFGA +VK I K P E ++ I L + R+ L+ +++++G D + G++G
Sbjct: 176 CMLFGAPRMVKNLTISGTQKTP-EIIELNKILENLSITREQLVDLAIMVGTDFN-QGIKG 233
Query: 222 IGLDTALQFVQNFSEDEILNILHKI 246
IG L+ ++ +I +IL K+
Sbjct: 234 IGAKKGLKLIKEHG--DIYHILEKL 256
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + + +I IL + + +P+ W
Sbjct: 242 GPKRAIELINTYR--DIETILDNLDSSKYTVPENW 274
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQ----ECVELLEL 129
P LKS R R + L A EE + + ++ +K Q EC +LL L
Sbjct: 88 KPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLML 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ + LGL + + + +L+G D+ ++GIG A++ ++ I I+ I
Sbjct: 208 HLNRVLQDLGLTWEQFVDLCILLGCDY-CESIRGIGPKRAVELIKQHK--TIEEIIQHID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TKKYPLPENW 274
>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
Length = 382
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++ HL TF RTI L + G PV+V DG
Sbjct: 29 RKIAIDASMCLYQFLIAVRSEGAQLTTVDGETTSHLMGTFHRTIRLVEQ-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L AEE VE F + + E +LL+L
Sbjct: 88 KPPNLKSGELAKRAERRDEAQKLLQAAEEDGNVEAIDKFSRRLVKVTKNHADEAKQLLQL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ + K P +
Sbjct: 148 MGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCDILLRRLTLSEARKLPVQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEIL-NILHK 245
+ + GL L I + +++G D+ ++G+G A++ ++N+ S D+I+ NI K
Sbjct: 208 HMDKVLTGLELNHDEFIDLCIMLGCDY-TGSIKGVGPKRAIELIKNYRSLDKIIENIDTK 266
Query: 246 IGNGDIPQYW 255
IP+ W
Sbjct: 267 --KYPIPENW 274
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + + +I IL + + +P+ W
Sbjct: 242 GPKRAIELINTYR--DIETILDNLDSSKYTVPENW 274
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + + +I IL + + +P+ W
Sbjct: 242 GPKRAIELINTYR--DIETILDNLDSSKYTVPENW 274
>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
gi|82082625|sp|Q5ZLN4.1|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
Length = 381
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQ----ECVELLEL 129
P LKS R R + L A EE + + ++ +K Q EC +LL L
Sbjct: 88 KPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLML 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ + LGL + + + +L+G D+ ++GIG A++ ++ I I+ I
Sbjct: 208 HLNRVLQDLGLTWEQFVDLCILLGCDY-CESIRGIGPKRAVELIKQHK--TIEEIIQHID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TKKYPLPENW 274
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 10/142 (7%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + + +L LFG+P + A EAEA CA L G V+ IT DSD FLFG V K +
Sbjct: 906 MISQIMIMLRLFGIPYITAPMEAEAQCATLVQLGLVEGIITDDSDVFLFGGLRVFKNMF- 964
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
N + EC+ +SD+ LGL+R L+ ++ L+G+D+ G+ G+G A++ ++ F D+
Sbjct: 965 NQSKTVECFLLSDLARELGLERNKLVQLAYLLGSDY-TEGLPGVGPVVAMELLKEFHGDD 1023
Query: 239 ILNILHKIGNGDIPQYWGDIKS 260
L+ D ++W ++S
Sbjct: 1024 ALS--------DFREWWVKVQS 1037
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV WDLL P R L+ + K +A+D S WI Q + ++ ++ HL + F
Sbjct: 1 MGVK-SLWDLLSPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRALVNAHL-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I +G PVFV DG LK
Sbjct: 59 LRRICKLLFYGIKPVFVFDGGAPALK 84
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 30/246 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K++A+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRMTSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKS-QARLARFYRSTIDASTLPVAEEGILVERNQTFLKC-------VQE 122
PV+V DG P K + R R + G + E + + +++
Sbjct: 75 PVYVFDGKPPEFKKKELEKRREAREEAEVKWREALARGDIEEARKYAQRATKVNEMLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LL+L G+P+++A E EA A + +G V A + D D+ LFGA +V+ + K
Sbjct: 135 AKQLLQLMGIPIVQAPSEGEAQAAYMAMKGDVYASASQDYDSLLFGAPRLVRNLTITGKR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + D+ L + R+ LI +++L+G D++ G++GIG AL+ V
Sbjct: 195 KMPGKDVYVEVKPELIILEDVLNQLKITREKLIELAILVGTDYNPGGIKGIGPKKALEIV 254
Query: 232 QNFSED 237
+ +S+D
Sbjct: 255 K-YSKD 259
>gi|452824082|gb|EME31087.1| DNA excision repair protein ERCC-5 [Galdieria sulphuraria]
Length = 928
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 153/369 (41%), Gaps = 97/369 (26%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
+E ELL + G+P ++A EAEA CA + G V+ +T DSDAFLFGAK V + I +
Sbjct: 616 EEIRELLRMLGIPYIQAPMEAEAQCAYFSQVGLVEGVVTEDSDAFLFGAKTVFRNIFED- 674
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEI 239
K+ E Y + DIE LGL R+ LI +SLL+G+D+ G+ G+G+ A + ++ F S +E+
Sbjct: 675 KKYVEQYEMEDIERYLGLNREKLILLSLLLGSDY-TQGIHGVGVVNATEIMRAFPSFEEL 733
Query: 240 LNILHKIGNGDIPQYWGD-IKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+ H W + + EE +S E +K+ F H KR
Sbjct: 734 IEFAH----------WANQLSLKEERISLDSEDPNFVKNEF--FLKHRKMKR-------- 773
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
NW I +FPN +V
Sbjct: 774 -------------------------------------NWVIH--------DSFPNKHVVD 788
Query: 359 MYLCENNGTFTATDGPSISW--GSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLRE 416
Y + D SI + P LV+F W +++ ++P+L R
Sbjct: 789 AY------RYPMVDTSSIEFHCQRPNIAQLVEFCRAKFGWNSDKVKKLVIPVLKAYDAR- 841
Query: 417 MATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEF 476
N QT C + F +R KI K K+ +A+ G+ T VD ++ L +
Sbjct: 842 ---NQRQT--CIEQYFHPMRFAKI---------KSKRLENAVRGI--TRAVDEEMFLSQT 885
Query: 477 MEYPQIHVD 485
E HVD
Sbjct: 886 REE---HVD 891
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W+L+ P R LD +R+K +AVD+S W+ Q A++ + + HL L
Sbjct: 1 MGVKG-LWELVAPVGRRVSLDTVRNKTLAVDVSIWLTQFLYAMRDSEGELIRNAHL-LGI 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
R + P+FV DG LK + +R
Sbjct: 59 LRRCCKLIFYNVTPIFVFDGATPQLKRRTLNSR 91
>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
Length = 381
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 21/235 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEG---ILVER-NQTFLKCVQ----ECVELLEL 129
P LKS R R + L A+E +E+ ++ +K Q EC +LL L
Sbjct: 88 KPPQLKSGELARRTERRSEAEKHLQEAQEAGEETNIEKFSKRLVKVTQQHTDECKKLLML 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILN 241
++ I LGL + + + +L+G D+ ++GIG A++ + Q+ + +EI+
Sbjct: 208 HLNRILQDLGLTWEQFVDLCILLGCDY-CESIRGIGPKRAVELIKQHKTIEEIIQ 261
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 13/205 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL+ F+RTI L ++ G P++V DG+ LKS R R L A E E
Sbjct: 64 HLQGMFYRTIKLISR-GIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGTNE 122
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
Q F K V ++C++LL L G+P++KA EAEA CA++ +G A + D D
Sbjct: 123 EVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMD 182
Query: 164 AFLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
+ G+ +++ + K P + + + GLGL + I +S+L+G D+ + ++G
Sbjct: 183 SLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDY-CDSIKG 241
Query: 222 IGLDTALQFVQNF-SEDEILNILHK 245
IG A++ +Q S +E++ L K
Sbjct: 242 IGPKRAIELIQKHKSLEEVIKHLDK 266
>gi|154292277|ref|XP_001546714.1| hypothetical protein BC1G_14593 [Botryotinia fuckeliana B05.10]
Length = 302
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R L A+E E
Sbjct: 75 HLMGMFYRTLRIVDN-GIKPVYVFDGAPPKLKSGELAKRFQRKATATEGLEEAKETGTAE 133
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 134 DIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAALARAGKVYAAASEDMD 193
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + + GL + RK + + +L+G D+ L+ +
Sbjct: 194 TLCFDSPILLRHLTFSEQRKEPIQEVSLEKVLTGLNMDRKQFVDLCILLGCDY-LDPIPK 252
Query: 222 IGLDTALQFVQNFSEDEIL 240
IG TAL+ ++ + E L
Sbjct: 253 IGPHTALKLIREHGDLETL 271
>gi|75057714|sp|Q58DH8.1|FEN1_BOVIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|61553325|gb|AAX46387.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61553832|gb|AAX46466.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61554710|gb|AAX46602.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|296471658|tpg|DAA13773.1| TPA: flap endonuclease 1 [Bos taurus]
Length = 380
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|392577233|gb|EIW70362.1| hypothetical protein TREMEDRAFT_43101 [Tremella mesenterica DSM 1558]
Length = 1306
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + LL FG+P + A EAEA CA+L + G VD IT DSD FLFG K I
Sbjct: 906 MIAQIQTLLRHFGIPYITAPMEAEAQCAKLATLGLVDGIITDDSDVFLFGGNQCFKNIFN 965
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
++K EC+ SDI+ + L R+ LI+++ L+G+D+ + G+ G+G AL+ + NF
Sbjct: 966 DSKY-VECFLSSDIQREISLDRERLISLAYLLGSDYTI-GLPGVGPVIALELLSNF 1019
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL P AR L+ L KR+A+D S W+ Q + ++ + H+ L F
Sbjct: 1 MGVKG-LWSLLNPVARPVQLESLEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R IN G PVFV DG LK
Sbjct: 59 LRRINKLLFHGIKPVFVFDGGAPVLK 84
>gi|440901464|gb|ELR52399.1| Flap endonuclease 1 [Bos grunniens mutus]
Length = 380
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|393905975|gb|EFO24532.2| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 11/239 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI--VQHETAIKKNSVPKPHLRLTFF 58
MGV W+ ++ + + + LR+KR+A+D W+ V + ++ KP+L TF+
Sbjct: 1 MGVTS-MWEYVQKFVQPVNISALRNKRIAIDGHTWLCEVLRGSVAHCSTARKPYLS-TFY 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
+ G P+ V DG + + R Y T + E Q +
Sbjct: 59 TRCRSLLEEGVEPIVVFDG----IDEEERANVDYGVTSMRKVRKRGSKYWTSELKQEMVP 114
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC--- 175
V+E LL G+ +++K E EA CAQL G V CI D D LFG + +
Sbjct: 115 KVEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVHGCIARDFDYILFGGNNLYQVEFG 174
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ + ++ L L R LIAM+++IG D+ G+ G+GL TAL+ V F
Sbjct: 175 FSGKIQNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIPGVGLVTALEIVSEF 233
>gi|307206657|gb|EFN84629.1| DNA-repair protein complementing XP-G cells [Harpegnathos saltator]
Length = 1139
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P + A EAEA CA L D IT DSD +LFG +CV K N+K
Sbjct: 767 EAQELLRLFGIPYVVAPMEAEAQCAYLEQIKLTDGTITDDSDIWLFGGRCVYKNFFNNSK 826
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
+ + DI+ L R LI ++LL+G+D+ GV GIG TAL+ + F E N
Sbjct: 827 R-VQQFRACDIQHHFKLTRNQLIQLALLVGSDY-TTGVAGIGPVTALEILAAFPA-EGDN 883
Query: 242 ILHKIGN 248
+LH + N
Sbjct: 884 VLHGLHN 890
>gi|396498478|ref|XP_003845243.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
gi|312221824|emb|CBY01764.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
Length = 935
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D S W+ Q + + + P LR ++R + L A PVFV DG P
Sbjct: 31 RPLRIAIDTSIWLFQIQASKGGTN---PALRTFYYRLLRLIA-LSIHPVFVFDGPNKPP- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
R R+ + +++P FL +LL+ FG P+ A GEAEA
Sbjct: 86 ----FKRNKRTGPNVASIP------------EFL-----AKQLLKQFGFPIHLAPGEAEA 124
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP----NTKEPFECYCISDIEAGL-GL 198
CA L EG VDA ++ D D +FG+ ++ P NT Y + + G GL
Sbjct: 125 ECALLQREGIVDAVLSEDVDTLMFGSGITLRNWSPEKSGNTPTHVNVYDAIETKNGPSGL 184
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
R+ +I ++L+ G D+ G+ G G TA
Sbjct: 185 DREGMILVALMSGGDYVPEGIPGCGPKTA 213
>gi|167536429|ref|XP_001749886.1| hypothetical protein [Monosiga brevicollis MX1]
gi|317374912|sp|A9VB27.1|FEN1_MONBE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|163771601|gb|EDQ85265.1| predicted protein [Monosiga brevicollis MX1]
Length = 368
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 22/228 (9%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFV 74
L D++VA+D S I Q AI+ HL F+RTI + G P++V
Sbjct: 26 LFDRKVAIDASMSIYQFLIAIRSEGSNLVNEAGEATSHLSGLFYRTIRM-VNHGIKPLYV 84
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVEL 126
DG P +KS L R R + L A E E+ + F + + ++C +L
Sbjct: 85 FDGKPPTMKSGELLKRGARRKEAQANLEEATEQGDTEQMEKFSRRLVHVTREHNEQCRQL 144
Query: 127 LELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPF 184
L L G+P + A EAEA CA+L G V A T D DA FG +++ K P
Sbjct: 145 LTLMGIPFIIAPTEAEAQCAELVKGGKVFATATEDMDALTFGTTVLLRHMTFSEARKMPI 204
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + + + GL + + I M +L+G D+ + ++GIG A Q ++
Sbjct: 205 QEFRLQ--KGGLEMSMEEFIDMCILLGCDY-CDSIKGIGRQKAYQLIK 249
>gi|406604494|emb|CCH44056.1| DNA repair protein [Wickerhamomyces ciferrii]
Length = 1010
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 109 LVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
L + ++ + ++E ELL FG+P + A EAEA CA+L VD IT DSD FLFG
Sbjct: 733 LRDSDEVTVTMIKEVQELLARFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFG 792
Query: 169 AKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
V K + + K E Y DIE LGL R+ LI ++ L+G+D+ G++GIG A+
Sbjct: 793 GGKVYKNMF-HEKHYVEFYSSQDIERELGLTRQKLIEIAQLLGSDY-TEGLKGIGPVNAM 850
Query: 229 QFVQNFSE 236
+ + +F +
Sbjct: 851 EILSHFGD 858
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W +L+P +R L+ L KR+AVD S WI Q A++ NS+ H+ + F
Sbjct: 1 MGVHS-LWGILEPTSRAVRLESLSRKRMAVDASIWIYQFLKAVRDKSGNSLTSSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA---RLARFYRSTIDASTLPVAEEGILVERNQ 114
FR I FG PVFV DG LK + R R DA+ I +++NQ
Sbjct: 59 FRRICKLLYFGIMPVFVFDGGAPVLKRETINKRKERRQGKRDDATKTAQKLLAIQLQKNQ 118
>gi|311247499|ref|XP_003122675.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
Length = 380
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
Length = 393
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 42 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 100
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 101 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSL 160
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 161 MGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 220
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 221 HLSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 278
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 279 NKYPVPENW 287
>gi|261402763|ref|YP_003246987.1| flap endonuclease-1 [Methanocaldococcus vulcanius M7]
gi|261369756|gb|ACX72505.1| flap structure-specific endonuclease [Methanocaldococcus vulcanius
M7]
Length = 326
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 21/255 (8%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLR--LT--- 56
+G +F D + R LD L+ K+VA+D + Q T+I+ K+ P + + +T
Sbjct: 1 MGVQFGDFIP--KRQISLDDLKGKKVAIDGMNALYQFLTSIRLKDGSPLKNKKGEITSAY 58
Query: 57 ---FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA------EEG 107
F++TI+L P++V DG P LK + R R + + A +E
Sbjct: 59 NGIFYKTIHLLEN-DITPIWVFDGEPPKLKEKTRKMRRHMKEQAEEKMKEAMKKENLDEV 117
Query: 108 ILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ ++L K V C LL L G+P + A E EA + + +G V A ++ D D+
Sbjct: 118 AKFAKRASYLTPKIVDNCKYLLGLMGIPYVNAPSEGEAQASYMAKKGDVWAVVSQDYDSL 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA VV+ + TKE E + D+ L + LI +++L+G D++ GV+GIG
Sbjct: 178 LYGAPRVVRNL-TTTKEMPELINLDDVLEELRISLDDLIDIAILMGTDYNPGGVKGIGFK 236
Query: 226 TALQFVQNFSEDEIL 240
A + V++ ++L
Sbjct: 237 RAYELVKSGVAKDVL 251
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 34/250 (13%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K++A+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE---EGILVERNQTFLKC-------V 120
P +V DG P K + R R + + L E +G L E + + +
Sbjct: 75 PAYVFDGKPPEFKRKELEKR--REAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLI 132
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++ +LL+L G+P+++A E EA A + S+G V A + D D+ LFGA +++ +
Sbjct: 133 EDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTITG 192
Query: 181 KEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
K E + ++ L + R+ LI +++L+G D++ GV+GIG AL+
Sbjct: 193 KRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKALE 252
Query: 230 FVQNFSEDEI 239
V+ +S D +
Sbjct: 253 IVR-YSRDPL 261
>gi|238579680|ref|XP_002389137.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
gi|215451076|gb|EEB90067.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
Length = 391
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 10/142 (7%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
+L LFG+P + A EAEA CA L S G VD IT DSD F+FG + V K + N + E
Sbjct: 2 MLRLFGIPYITAPMEAEAQCAVLVSLGLVDGIITDDSDVFVFGGQRVYKNMF-NQSKTVE 60
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
C+ +SD+ LGL + LI ++ L+G+D+ + G+ G+G A++ ++ F + + LHK
Sbjct: 61 CFLLSDLSRELGLDQGTLIRLAYLLGSDY-VEGLPGVGPVVAMELLKEFPGE---DGLHK 116
Query: 246 IGNGDIPQYWGDIKSTEEAVSH 267
+ +W +++ + H
Sbjct: 117 FKD-----WWTKVQTGRDKEDH 133
>gi|342882941|gb|EGU83505.1| hypothetical protein FOXB_05915 [Fusarium oxysporum Fo5176]
Length = 395
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 23/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMNESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
+ + GL ++RK + + +L+G D+ L+ + +G TAL+ + ++ S ++++ + K
Sbjct: 208 HLEKVLEGLNMERKQFVDLCILLGCDY-LDPIPKVGPSTALKLIREHGSLEKVVEAIEKD 266
Query: 247 GNGD--IPQYW 255
IP+ W
Sbjct: 267 PKKKYTIPEDW 277
>gi|189192965|ref|XP_001932821.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978385|gb|EDU45011.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 936
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D S W+ Q + + + P LR ++R + L A P+FV DG P
Sbjct: 31 RPLRIAIDTSIWLFQIQASKGGTN---PALRTFYYRLLRLIA-LAIHPIFVFDGPNKPP- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
R R+ + +++P FL +LL+ FG P+ A GEAEA
Sbjct: 86 ----FKRNKRTGPNVASIP------------EFL-----AKQLLKQFGYPIHLAPGEAEA 124
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP----NTKEPFECYCISDIEAGL-GL 198
CA L EG VDA ++ D D +FG+ ++ P NT Y + + G GL
Sbjct: 125 ECALLQREGIVDAVLSEDVDTLMFGSGITIRNWSPEKSGNTPTHVNVYDAVETKNGQSGL 184
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
R+ +I ++++ G D+ G+ G G TA
Sbjct: 185 DREGMILVAMMSGGDYVPEGIPGCGPKTA 213
>gi|325192518|emb|CCA26951.1| DNA repair protein putative [Albugo laibachii Nc14]
Length = 939
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ V++ +ELL LFG+P L EAEA CA L G VD +T DSD F FG V K I
Sbjct: 651 EMVEQVMELLTLFGVPFLVCPMEAEAQCATLEQLGLVDGIVTDDSDIFPFGGTKVYKNIF 710
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ K E + DIE LG R +I+++LL+G+D+ GV+GIG+ A + + +F
Sbjct: 711 HHQKF-VEAFDTRDIERELGFTRADMISLALLLGSDY-TPGVRGIGIVNAAEIISSF 765
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV W LL P R ++ L +KR+AVD S W+VQ A++ + + HL TF
Sbjct: 1 MGVQN-LWLLLSPVGRQIEIESLENKRLAVDASIWLVQFVKAMRDDQGHMIKNAHLIGTF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL 101
R L +G PVFV DG LK Q R R +++ TL
Sbjct: 60 HRVSKLL-HYGIRPVFVFDGQTPVLKQQTLERR--RKRVESQTL 100
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + LL LFG+P + A EAEA CA L + G V+ IT DSD FLFG+ V K +
Sbjct: 883 QMISQIMVLLRLFGIPYITAPMEAEAQCATLVALGLVEGVITDDSDVFLFGSARVFKNMF 942
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + EC+ D+ LGL R LI ++ L+G+D+ ++G+ G+G A++ ++ F
Sbjct: 943 -NQSKTVECFIAGDLTRELGLDRDKLIRLAYLLGSDY-VDGLPGVGPVVAMEILEEF 997
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV G W L+ P R L+ + K +A+D S W+ Q + ++ ++ H+ L F
Sbjct: 1 MGVKG-LWKLVGPVGRPVLLETVEGKTMAIDSSIWLYQFQATMRDKDGRALVNAHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAEEGILVERNQTF 116
R I +G PVFV DG +K R R S AS +AE + + +
Sbjct: 59 LRRICKLLFYGIKPVFVFDGGAPAIKKATITERKKRKSGFAASHAKLAERILAAQMRREA 118
Query: 117 LKCVQ 121
+ VQ
Sbjct: 119 VAHVQ 123
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 38/276 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQ---------HETAIKKNSVPKP 51
M G + +LL+P ++A+D S I Q ET +
Sbjct: 1 MHEGEQIRELLRP-------------QIAIDASMSIYQFLIVVGRSGAETLTNEAGEVTS 47
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQ---ARLARFYRSTIDASTLPVAEEGI 108
HL+ F RTI L + G PV+V DG P +K Q RL++ +T D S A+
Sbjct: 48 HLQGMFTRTIRLL-ESGMKPVYVFDGKPPDMKKQELAKRLSKRAEATEDLSEALKADNKE 106
Query: 109 LVER-NQTFLKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+E+ ++ +K ++ E LL L G+PV++A EAEA CA L G V A + D D
Sbjct: 107 DIEKFSKRTVKVTKQHNEDYKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMD 166
Query: 164 AFLFGA-KCVVKCIRPNTKE-PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
+ FGA K + + P++K+ P + ++ I L L I + +L G D+ + ++G
Sbjct: 167 SLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRG 225
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNG--DIPQYW 255
IG TAL+ ++ I NIL I IP+ W
Sbjct: 226 IGGQTALKLIRQHG--SIENILENINKERYQIPEDW 259
>gi|406860923|gb|EKD13979.1| hypothetical protein MBM_07656 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1010
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 37/218 (16%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP-L 82
R R+A+D+S W Q ++ ++ P +R ++R I L + P+FV DG P L
Sbjct: 31 RPLRLAIDISIWQFQIQSGQGGSN---PAIRTLYYRLIRLLS-LSIQPLFVFDGPQRPQL 86
Query: 83 KSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAE 142
K R+ R S D + +LL+LFG P A GEAE
Sbjct: 87 KRNKRVGRGGASASDMA-----------------------AKQLLKLFGFPCHNAPGEAE 123
Query: 143 ALCAQLNSEGYVDACITADSDAFLFGAKCVVK-----CIRPNTKEPFECYCIS---DIEA 194
A CA L +G VDA ++ D D +FG+ ++ R +K P E
Sbjct: 124 AECALLQRKGIVDAVLSEDVDTLMFGSGITLRDWSSEGAR-GSKAPTHVSLFDAKKTKEG 182
Query: 195 GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
GL R+ +I ++LL G D++ +G+ GIG+ A Q +
Sbjct: 183 SSGLDREGMILVALLSGGDYNTDGLPGIGIKVACQAAR 220
>gi|336259381|ref|XP_003344492.1| hypothetical protein SMAC_08742 [Sordaria macrospora k-hell]
gi|317376194|sp|D1ZT73.1|FEN1_SORMK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|380087456|emb|CCC05373.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 23/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNEAGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFHTPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHKI 246
+ GLG+ RK + + +L+G D+ L+ + +G TAL+ ++ +E++ +
Sbjct: 208 HTDKVLEGLGMDRKQFVDLCILLGCDY-LDPIPKVGPSTALKLIREHGTLEEVVEWMKAD 266
Query: 247 GNG--DIPQYW 255
G IP+ W
Sbjct: 267 PKGRYQIPEDW 277
>gi|321251586|ref|XP_003192115.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
gattii WM276]
gi|317458583|gb|ADV20328.1| Single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus gattii WM276]
Length = 1263
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V + LL FG+P + A EAEA CA+L G VD IT DSD FLFG V+C +
Sbjct: 887 MVAQIQTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGG---VQCFKN 943
Query: 179 --NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
N + EC+ ++D+E L L R+ LI+++ +G+D+ L G+ GIG L+ + NF
Sbjct: 944 IFNDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTL-GLPGIGPVMGLEILANFPG 1002
Query: 237 DEILNILHKIGNGDIPQYWGDIKSTEEAVSHS 268
+ G D ++WG ++ ++ S
Sbjct: 1003 ER--------GLYDFKEWWGRVQRGDDTEEES 1026
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL P AR ++ + KR+A+D S W+ Q + ++ + H+ L F
Sbjct: 1 MGVKG-LWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTF 116
R IN G PVFV DG LK R + T A+ VAE+ + +
Sbjct: 59 LRRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGAAANHAKVAEKLFAAQMRREA 118
Query: 117 LKCVQ 121
+K Q
Sbjct: 119 VKAAQ 123
>gi|400598682|gb|EJP66391.1| DNA-repair protein rad2 [Beauveria bassiana ARSEF 2860]
Length = 394
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQTAQEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLAKAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL +KRK + + +L+G D+ L+ + +G TAL+ ++
Sbjct: 208 HLDKVLEGLNMKRKQFVDLCILLGCDY-LDPIPKVGPTTALKLIRE 252
>gi|330914144|ref|XP_003296510.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
gi|311331271|gb|EFQ95374.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
Length = 934
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D S W+ Q + + + P LR ++R + L A P+FV DG P
Sbjct: 31 RPLRIAIDTSIWLFQIQASKGGTN---PALRTFYYRLLRLIA-LAIHPIFVFDGPNKPP- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
R R+ + +++P FL +LL+ FG P+ A GEAEA
Sbjct: 86 ----FKRNKRTGPNVASVP------------EFL-----AKQLLKQFGYPIHLAPGEAEA 124
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP----NTKEPFECYCISDIEAGL-GL 198
CA L EG VDA ++ D D +FG+ ++ P NT Y + + G GL
Sbjct: 125 ECALLQREGIVDAVLSEDVDTLMFGSGITIRNWSPEKSGNTPTHVNVYDAVETKNGQSGL 184
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
R+ +I ++++ G D+ G+ G G TA
Sbjct: 185 DREGMILVAMMSGGDYVPEGIPGCGPKTA 213
>gi|348560389|ref|XP_003465996.1| PREDICTED: flap endonuclease 1-like [Cavia porcellus]
Length = 380
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 111/250 (44%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGEVLQNEEGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAVGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+S + L L + + + +L+G+D+ ++GIG A+ +Q I I+ ++
Sbjct: 208 HLSRVLQALDLTQAQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHK--SIEEIVRRLD 264
Query: 248 NGD--IPQYW 255
+ +P+ W
Sbjct: 265 HSKYPVPENW 274
>gi|345563417|gb|EGX46418.1| hypothetical protein AOL_s00109g176 [Arthrobotrys oligospora ATCC
24927]
Length = 610
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 114/267 (42%), Gaps = 36/267 (13%)
Query: 1 MGVGGKFWDLLKP----YARFEGLDFLRDKR---VAVDLSYWIVQHETAIKKNSVPKPHL 53
MG+ G + +L P A+ F R KR VA+D+S W Q + +++ L
Sbjct: 1 MGIKGLYEELGAPDKVPLAKLSIDHFKRHKRHIRVAIDISIWAFQSKAVQGRSTGSNAPL 60
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN 113
R+ ++R +L + VFV DG P F R G +
Sbjct: 61 RVIYYRLCSLLS-LNIHAVFVFDGKDRP--------EFKR-------------GKSISGG 98
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
+ +L L+ FG P+ A GEAEA CA L +G VDA ++ D D +FG +
Sbjct: 99 EGYLLAFSR--RLITAFGFPIHNAPGEAEAECAYLQKQGIVDAVLSEDVDTLMFGCRQSW 156
Query: 174 K-CIRPNTK--EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ C + ++K E + Y I GL ++ +LL G D++ GV GIG+ A+
Sbjct: 157 RSCEKGDSKTLEIMQVYQSRVIRDKTGLTPAGMVLTALLSGGDYNTAGVAGIGMKQAVAA 216
Query: 231 VQNFSEDEILNI--LHKIGNGDIPQYW 255
+ DE+L L G Q W
Sbjct: 217 AKAGFGDELLQACKLEASDGGHALQLW 243
>gi|410924704|ref|XP_003975821.1| PREDICTED: probable flap endonuclease 1 homolog [Takifugu rubripes]
Length = 297
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 126/263 (47%), Gaps = 30/263 (11%)
Query: 1 MGVGGKFWDLLKPYAR----FEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT 56
MG+ K DL++ AR ++ + K +A+D S + Q A S L
Sbjct: 1 MGIT-KLADLIRSNARDAVSYKDISDYTGKAIALDTSIVVNQFRAATPSLS----PLIGV 55
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF 116
FFR + F + PVFV DG P P + +A L + S S R T
Sbjct: 56 FFRALT-FLEHDIKPVFVFDGRP-PGEKRAVLEKRAESAGWRSP----------NRKGTA 103
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
++C++LL+L G+PV++A G+AEALCA L EG VDA + D D FGA +++ +
Sbjct: 104 SSSTRDCLQLLKLIGVPVIQAPGDAEALCAWLVKEGTVDAVASEDMDTLPFGASILIRQL 163
Query: 177 RPNTKEPFEC--YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N+K+ E Y +S + L + + + + +L+G D+ + G+G AL +Q
Sbjct: 164 --NSKKDGEVIEYSLSKLLERLQINHQEFVDLCILLGCDY-CEKICGLGPKRALTLIQKH 220
Query: 235 S--EDEILNILHKIGNGDIPQYW 255
E+ IL++ K +P +W
Sbjct: 221 RTIENVILHVNRK--THPVPLFW 241
>gi|58258651|ref|XP_566738.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. neoformans JEC21]
gi|57222875|gb|AAW40919.1| single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1323
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E Q+ + +Q LL FG+P + A EAEA CA+L G VD IT DSD FLFG
Sbjct: 942 EITQSMIAQIQT---LLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGG- 997
Query: 171 CVVKCIRP--NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
V+C + N + EC+ ++D+E L L R+ LI+++ +G+D+ L G+ GIG L
Sbjct: 998 --VQCFKNIFNDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTL-GLPGIGPVMGL 1054
Query: 229 QFVQNFSEDEILNILHKIGNGDIPQYWGDIK 259
+ + NF + G D ++WG ++
Sbjct: 1055 EILANFPGER--------GLYDFKEWWGRVQ 1077
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL P AR ++ + KR+A+D S W+ Q + ++ + H+ L F
Sbjct: 65 MGVKG-LWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHV-LGF 122
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTF 116
R IN G PVFV DG LK R + T A+ VAE+ + +
Sbjct: 123 LRRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGAAANHAKVAEKLFAAQMRREA 182
Query: 117 LKCVQECVE 125
+K Q E
Sbjct: 183 VKAAQVAQE 191
>gi|380025170|ref|XP_003696351.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis florea]
Length = 1095
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 18/244 (7%)
Query: 15 ARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVP-KPHLRLTFFRTINLFAKFGAFPVF 73
A+F+G++ K+ +D+ I+ KKN + K ++ + N
Sbjct: 617 AKFDGIN----KQSDIDIDLNILNTNVPSKKNQIEDKTNIEEVTNASKNNIENINIKDTI 672
Query: 74 VVDGTPSPLK-------SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ-ECVE 125
++ P+P++ ++ L D T +A G L + ++ E E
Sbjct: 673 NINTLPNPIEKISPIPMNENELLSLQAQLEDKQTELIANIGKLERQGIDISDQIRIEAQE 732
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL+LFG+P L A EAEA CA L D IT DSD +LFG +CV K N K+ E
Sbjct: 733 LLKLFGIPYLVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQCVYKNFFDNNKKVLE 792
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILH 244
+ DI+ L R +I ++LL+G+D+ G+ GIG TAL+ + F SE E N+L
Sbjct: 793 -FRACDIQRYFKLTRNEMIRLALLVGSDY-TTGLTGIGPVTALEILAAFPSEGE--NLLQ 848
Query: 245 KIGN 248
+ N
Sbjct: 849 GLVN 852
>gi|224006438|ref|XP_002292179.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
gi|220971821|gb|EED90154.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
Length = 307
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++ +ELLEL G+P +++ EAEA CA L G VD +T DSD F+FG + V K N
Sbjct: 19 EDILELLELCGIPWVESPSEAEAQCAALEELGLVDGVVTEDSDIFVFGGRKVYKNFF-NE 77
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
++ E Y D E L L + +IA+++L+G D+ +GV+G+G+ ++ +Q F
Sbjct: 78 QQYVEAYYAKDAEKELALGKHQMIALAMLLGGDY-TDGVKGVGIVNGMEILQAF 130
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 131/278 (47%), Gaps = 34/278 (12%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNS--------VP 49
MG+ G K + P+A EG + ++VA+D S + Q A++ S
Sbjct: 1 MGILGLSKLLADVAPHAIREGEIKHYFGRKVAIDASMCLYQFLIAVRNESGQLTSVDGET 60
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS------QARLARFYRSTIDASTLPV 103
HL TF+RTI L G PV+V DG P LKS Q R ++ A+ L
Sbjct: 61 TSHLLGTFYRTIRLIEN-GIKPVYVFDGKPPELKSAELSKRQERRDEAQKALDKATELGD 119
Query: 104 AEEGILVERNQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
A E + + N+ +K + E +LL L G+P ++A EAEA CA + G V A T
Sbjct: 120 ATE--VDKFNRRLVKVTRHHADEAKQLLTLMGVPYIEAPCEAEAQCAAMVKGGLVYATAT 177
Query: 160 ADSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN 217
D DA FG+ +++ K P + +S + GL L +K + + +L+G D+
Sbjct: 178 EDMDALTFGSNVLLRHLTFSEARKMPVQEIHLSKVLEGLELDQKAFVDLCILLGCDYT-E 236
Query: 218 GVQGIGLDTALQFVQNF-SEDEILNILHKIGNGDIPQY 254
++GIG A++ ++ S +EIL N D+ +Y
Sbjct: 237 SIRGIGPKRAIELIKKHKSIEEILK------NIDVKKY 268
>gi|367031946|ref|XP_003665256.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
gi|347012527|gb|AEO60011.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
Length = 395
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELARRFQRKQEATEGLEEAKETGTSEDVEKFSRRTVRVTKEHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGVPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+S + GL + RK + + +L+G D+ L+ + +G TAL+ ++
Sbjct: 208 HVSKVLEGLNMDRKQFVDLCILLGCDY-LDPIPKVGPSTALKLIRE 252
>gi|7576228|emb|CAB87918.1| putative protein [Arabidopsis thaliana]
Length = 337
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 118/257 (45%), Gaps = 21/257 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT-FFR 59
MGV WD+L+P + LD L++KRV VDLS W+V+ K K + L FF
Sbjct: 1 MGVK-YLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKS---QARL-ARFYRSTIDASTLPVAEEGILVERNQT 115
+ + V DG +K + RL ARF D P E +
Sbjct: 60 RLRALIALNCSIILVSDGAIPGIKVPTYKRRLKARF--EIADDGVEPSKETSLKRNMGSE 117
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYV-DACITADSDA----FLFGAK 170
F ++E + G+ L EAEA CA LNSE + + + D+ FL +
Sbjct: 118 FSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCRNMPWSVERDSLVCWFLLPSD 177
Query: 171 CVVKCIRPN--TKEPFE-----CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
V I PN E E CY + DI+ LGL R LIA++LL+G+D+ GV+G+
Sbjct: 178 MVNSIISPNKFANELGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRGLR 236
Query: 224 LDTALQFVQNFSEDEIL 240
+ A + V++ ++ IL
Sbjct: 237 QEKACELVRSIGDNVIL 253
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 34/250 (13%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K++A+D I Q + I++ + P HL F+RTINL + G
Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQEDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE---EGILVERNQTFLKC-------V 120
P +V DG P K + R R + + L E +G L E + + +
Sbjct: 75 PAYVFDGKPPEFKRKELEKR--REAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLI 132
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++ +LL+L G+P+++A E EA A + S+G V A + D D+ LFGA +++ +
Sbjct: 133 EDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTITG 192
Query: 181 KEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
K E + ++ L + R+ LI +++L+G D++ GV+GIG AL+
Sbjct: 193 KRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKALE 252
Query: 230 FVQNFSEDEI 239
V+ +S D +
Sbjct: 253 IVR-YSRDPL 261
>gi|312073479|ref|XP_003139538.1| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 13/241 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI--VQHETAIKKNSVPKPHLRLTFF 58
MGV W+ ++ + + + LR+KR+A+D W+ V + ++ KP+L TF+
Sbjct: 1 MGVTS-MWEYVQKFVQPVNISALRNKRIAIDGHTWLCEVLRGSVAHCSTARKPYLS-TFY 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
+ G P+ V DG + + R Y T + E Q +
Sbjct: 59 TRCRSLLEEGVEPIVVFDG----IDEEERANVDYGVTSMRKVRKRGSKYWTSELKQEMVP 114
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC--- 175
V+E LL G+ +++K E EA CAQL G V CI D D LFG + +
Sbjct: 115 KVEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVHGCIARDFDYILFGGNNLYQARVE 174
Query: 176 --IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + ++ L L R LIAM+++IG D+ G+ G+GL TAL+ V
Sbjct: 175 FGFSGKIQNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIPGVGLVTALEIVSE 234
Query: 234 F 234
F
Sbjct: 235 F 235
>gi|158299596|ref|XP_319693.4| AGAP008939-PA [Anopheles gambiae str. PEST]
gi|157013593|gb|EAA14799.5| AGAP008939-PA [Anopheles gambiae str. PEST]
Length = 1256
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++C+ELL++FG+P + A EAEA CA LN D IT DSD +LFG K V K
Sbjct: 892 RDCMELLQIFGVPFIVAPMEAEAQCAFLNQLDMTDGTITDDSDIWLFGGKKVYKNFFNQQ 951
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
K E + I IE + RK LI ++LL+G+D+ G+ GIG TAL+ + +F
Sbjct: 952 KLVLE-FTIEGIEQMFQMDRKKLIQLALLVGSDY-TTGIHGIGAVTALEILASF 1003
>gi|134106579|ref|XP_778300.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261003|gb|EAL23653.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1323
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E Q+ + +Q LL FG+P + A EAEA CA+L G VD IT DSD FLFG
Sbjct: 942 EITQSMIAQIQT---LLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGG- 997
Query: 171 CVVKCIRP--NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
V+C + N + EC+ ++D+E L L R+ LI+++ +G+D+ L G+ GIG L
Sbjct: 998 --VQCFKNIFNDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTL-GLPGIGPVMGL 1054
Query: 229 QFVQNFSEDEILNILHKIGNGDIPQYWGDIK 259
+ + NF + G D ++WG ++
Sbjct: 1055 EILANFPGER--------GLYDFKEWWGRVQ 1077
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL P AR ++ + KR+A+D S W+ Q + ++ + H+ L F
Sbjct: 65 MGVKG-LWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHV-LGF 122
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTF 116
R IN G PVFV DG LK R + T A+ VAE+ + +
Sbjct: 123 LRRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGAAANHAKVAEKLFAAQMRREA 182
Query: 117 LKCVQ 121
+K Q
Sbjct: 183 VKAAQ 187
>gi|452840124|gb|EME42062.1| hypothetical protein DOTSEDRAFT_174868 [Dothistroma septosporum
NZE10]
Length = 393
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + A++ N HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSLYSFLVAVRSNGEQLMSDTGETTSHLMGMFYRTLRIVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + + A+E E + F + E LL+L
Sbjct: 88 APPKLKSGELAKRFQRKSEAQADHEEAKETGTAEEVEKFSRRTVRVTREHNAEAQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGVPFIIAPTEAEAQCAVLARAGKVYAAASEDMDTLTFDSPVLLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ + GL + +K I + +L+G D+ L+ V+GIG AL+ ++ E N++ +I
Sbjct: 208 FLDRVLEGLEMDQKQFIDLCILLGCDY-LDPVKGIGPKVALELIKKHKTLE--NVVEEIK 264
Query: 248 NGD---IPQYW 255
G +P+ W
Sbjct: 265 KGSKYTLPEDW 275
>gi|68076243|ref|XP_680041.1| DNA repair endonuclease [Plasmodium berghei strain ANKA]
gi|56500911|emb|CAH98970.1| DNA repair endonuclease, putative [Plasmodium berghei]
Length = 1262
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL+ FG+P ++A EAEA C+ LN+ Y DA I+ DSD +F K ++K N K+ E
Sbjct: 946 LLDFFGIPYIQAPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKNFF-NKKKTVE 1004
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y + IE LGL + LI +S+L G D+ + GV G+G+ AL+ V+ F + L IL +
Sbjct: 1005 VYEKNLIERKLGLYQDDLINISMLCGCDYTV-GVHGVGIVNALEIVKAFPTFDDLKILKE 1063
Query: 246 IGNGDIPQYWGDIKSTEEAVSHSDE 270
I + DI + ++SDE
Sbjct: 1064 I----VSNPLRDIYQENDENNYSDE 1084
>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
Length = 389
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 123/288 (42%), Gaps = 34/288 (11%)
Query: 1 MGVGGKFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKP----- 51
MG+ G LL+ A R + L + +A+D S + Q AI+ N P
Sbjct: 1 MGIKG-LMKLLQEEAPSCIREVQMSHLAGRSIAIDASMALYQFLIAIRSNDGAGPAQALT 59
Query: 52 --------HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPV 103
HL+ F RTI L G PV+V DG P +KS+ R R T +L
Sbjct: 60 NQDGEDTSHLQGMFSRTIRLMEN-GIKPVYVFDGKPPVMKSKELEKRKDRRTAANKSLEE 118
Query: 104 A-EEGILVERNQTFLKCV-------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVD 155
A E G LVE ++ + V Q+C ELL L G+PVL A EAEA CA L V
Sbjct: 119 ATEAGNLVEIDRFSKRLVHATSQHSQDCKELLRLMGVPVLTAPCEAEATCATLAKHHKVY 178
Query: 156 ACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGND 213
A T D D FG + + + N K P + L L + + + +L G D
Sbjct: 179 ASGTEDMDVLTFGTPVLYRRMTVAANKKVPILEIKLEQALKALDLTEQQFVDLCILCGCD 238
Query: 214 HDLNGVQGIGLDTALQFVQNFSEDE-ILNILHKIGNGD--IPQYW-GD 257
+ + ++GIG A ++ E L L + N IP+ W GD
Sbjct: 239 Y-CDSIRGIGPKKAFNGIKEHKTIENFLQHLQQSNNKGVVIPEEWLGD 285
>gi|408388052|gb|EKJ67747.1| hypothetical protein FPSE_12118 [Fusarium pseudograminearum CS3096]
Length = 790
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 35/240 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D++ W Q++ A + P +R F+R + L A P+FV DG P
Sbjct: 31 RPLRIAIDVAIWQFQNQAAQGGTN---PEIRTLFYRLVRLLA-CPVEPIFVFDGPYKPA- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
L R +S+ R +F + L+ LFG + A GEAEA
Sbjct: 86 ----LKRNKQSS----------------RGSSFANA--QAKRLIRLFGCNIHDAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEA------GLG 197
CA L G VD +T D DA +FG V++ P +K +S ++A G
Sbjct: 124 ECALLQQHGIVDMVLTEDVDALMFGCTKVLRKWSPESKRSTNPTHVSLLDAKNLELGAQG 183
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGD 257
L R+ ++ ++L+ G D++ +G+ G G+ AL+ + ++ I K + + Q W D
Sbjct: 184 LDREGMVLVALMSGGDYNPDGLPGCGIKVALEAARAGFGKQLCRI--KSADKEAIQAWRD 241
>gi|403255047|ref|XP_003920260.1| PREDICTED: flap endonuclease 1 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403255049|ref|XP_003920261.1| PREDICTED: flap endonuclease 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASESKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDPT 266
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 267 -KYPVPENW 274
>gi|312377995|gb|EFR24684.1| hypothetical protein AND_10542 [Anopheles darlingi]
Length = 1428
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C+ELL+LFG+P + A EAEA CA LN D IT DSD +LFG + V K K
Sbjct: 925 DCMELLQLFGVPYIVAPMEAEAQCAFLNQIELTDGTITDDSDIWLFGGQKVYKNFFNQQK 984
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E + I IE + RK LI ++LL+G+D+ G+ GIG TAL+ + +F
Sbjct: 985 LVLE-FTIEGIEQAFQMDRKKLIQLALLVGSDY-TTGIHGIGAVTALEILASF 1035
>gi|388858154|emb|CCF48222.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Ustilago hordei]
Length = 1592
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ QE +L LFG+P + A EAEA CA+L S VD IT DSD FLFG + K +
Sbjct: 1037 QMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLFGGTRIYKNMF 1096
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SE 236
N K EC+ +SD++ LGL R+ L+ ++ +G+D+ G+ G+G A++ + F E
Sbjct: 1097 NNNKI-VECFLLSDMQRELGLDREKLVRLAYYLGSDY-TEGLVGVGPVVAMELLALFPGE 1154
Query: 237 DEIL 240
D +L
Sbjct: 1155 DGLL 1158
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+P AR ++ L KR+A+D S W+ + A++ ++ H+
Sbjct: 1 MGVQG-LWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDREGRTLSNAHILGFL 59
Query: 58 FRTINLFAKFGAFPVFVVDG 77
+R + L G PVFV DG
Sbjct: 60 WRILKLLF-HGVRPVFVFDG 78
>gi|71019629|ref|XP_760045.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
gi|46099838|gb|EAK85071.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
Length = 1532
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ QE +L LFG+P + A EAEA CA+L S VD IT DSD FLFG V K +
Sbjct: 1033 QMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLFGGTRVYKNMF 1092
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N K EC+ +SD++ LGL R+ L+ ++ +G+D+ G+ G+G A++ + F
Sbjct: 1093 NNNKI-VECFLLSDMQRELGLDREKLVQLAYYLGSDY-TEGLVGVGPVVAMELLALF 1147
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+P AR ++ L KR+A+D S W+ + A++ ++ H+
Sbjct: 1 MGVQG-LWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKDGRTLSNAHILGFL 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
+R + L G PVFV DG +K + R R
Sbjct: 60 WRILKLLF-HGVRPVFVFDGGAPAMKRKTLSGRKAR 94
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ HL F+RTI L + G P++V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVDGETTSHLMGMFYRTIRLVEQ-GIKPIYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVER----NQTFLKCVQ----ECVELLEL 129
P LK R + L AEE E N+ +K Q E +LL+L
Sbjct: 88 KPPNLKGGELAKRAEKRDEAQKLLQAAEEAGNAEDIEKFNRRLVKVTQVHADEAKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P ++A EAEA CA L G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYVEAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKMPVQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+ GLGL + I + +++G D+ N ++G+G A++ ++ S ++IL L
Sbjct: 208 HHDKVLEGLGLNQDEFIDLCIMLGCDY-TNSIKGVGPKRAMELIKTHRSLEKILENLD-T 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPEDW 274
>gi|348540973|ref|XP_003457961.1| PREDICTED: flap endonuclease 1-like [Oreochromis niloticus]
Length = 380
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + EC +LL L
Sbjct: 88 KPPQLKSAELEKRGERRAEAEKMLAQAQEIGEQENIDKFTKRLVKVTKQHNDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTNILLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
S I +GL + I + +L+G D+ ++GIG A+ + Q+ S +EIL
Sbjct: 208 HFSRILQDIGLTNEQFIDLCILLGCDY-CGTIKGIGPKRAIDLIKQHGSIEEIL 260
>gi|328874795|gb|EGG23160.1| XPG [Dictyostelium fasciculatum]
Length = 308
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 21/229 (9%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKK-------NSVPK--PHLRLTFFRTINLFAKFGAFPVF 73
L + +AVD S + Q TAI NS+ + HL+ TF+RTI F G PVF
Sbjct: 41 LEGRIIAVDTSNNLYQFLTAIGTENGSSLMNSIGETTSHLQGTFYRTIK-FMSNGIKPVF 99
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVE 125
V DG P LKS R + L A+E E F K +EC++
Sbjct: 100 VFDGAPPTLKSGELAKRSAKKKEAKENLDEAKETGTTEDVAKFSKRTTSATRKQNEECIK 159
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEP 183
LL L G+PV++A EAEA CA+L G A + D D+ FG K +++ + + K P
Sbjct: 160 LLTLMGIPVVRAPCEAEAQCAELVKGGKAWASGSEDMDSLAFGTKILLRNLTASDQKKNP 219
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + G G I + +L+G D+ ++GIG A + +Q
Sbjct: 220 LWEFDHEKLLYGTGFTHDQFIDLCILLGCDY-CESIRGIGPVRAFELMQ 267
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 32/249 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L ++VA+D I Q + I+ K+ P HL F+RTINL + G
Sbjct: 16 LENLNGRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQA--RLARFYRSTIDASTLPVAEEGILVERNQTFLKC-------VQ 121
P +V DG P K + + A ++ + +A G L E + + ++
Sbjct: 75 PAYVFDGKPPEFKKKELEKRAETREEALEKWEIALAR-GELEEAKKYAQRASKINEILIE 133
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ +LLEL G+P ++A E EA A + S+G V A + D D+ LFG +V+ + K
Sbjct: 134 DAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLTITGK 193
Query: 182 EPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
E + D+ L L R+ LI +++L+G D++ G++G+G AL+
Sbjct: 194 RKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKKALEI 253
Query: 231 VQNFSEDEI 239
V+ +S+D +
Sbjct: 254 VK-YSKDPL 261
>gi|428169402|gb|EKX38336.1| flap endonuclease 1 [Guillardia theta CCMP2712]
Length = 435
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 107/235 (45%), Gaps = 26/235 (11%)
Query: 21 DFLRDKRVAVDLSYWIVQHETAIK---KNSVPKP----------HLRLTFFRTINLFAKF 67
DF + K++A+D S + Q A++ +N V +P HL+ F+RTI + K
Sbjct: 52 DF-QGKKLAIDASMAMYQFLIAVRSTGENGVAQPLTSASGEETSHLQGFFWRTIAMV-KA 109
Query: 68 GAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------C 119
G P++V DG P LKS +R R A L A E VE F K
Sbjct: 110 GIRPLYVFDGKPPSLKSGEIASRNLRRDEGAKRLQEATEEGNVEEMNKFAKRTTRVTKQH 169
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIR 177
+EC LL L G+P + A EAEA CA L G V A T D DA G+ +V+ +
Sbjct: 170 AEECKRLLRLLGVPTVDAPSEAEAQCAALAKNGLVYASATEDMDALCCGSPILVRRLTMS 229
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K P Y + + + LGL + +L G D ++GIG +AL ++
Sbjct: 230 EARKLPVLEYHLDQVLSSLGLNMTQFVDFCILCGCDFS-ETIKGIGPKSALHGIR 283
>gi|388454741|ref|NP_001252879.1| flap endonuclease 1 [Macaca mulatta]
gi|402893159|ref|XP_003909769.1| PREDICTED: flap endonuclease 1 isoform 1 [Papio anubis]
gi|402893161|ref|XP_003909770.1| PREDICTED: flap endonuclease 1 isoform 2 [Papio anubis]
gi|75076152|sp|Q4R5U5.1|FEN1_MACFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|67970375|dbj|BAE01530.1| unnamed protein product [Macaca fascicularis]
gi|355566422|gb|EHH22801.1| Flap endonuclease 1 [Macaca mulatta]
gi|355752043|gb|EHH56163.1| Flap endonuclease 1 [Macaca fascicularis]
gi|380787489|gb|AFE65620.1| flap endonuclease 1 [Macaca mulatta]
gi|383413161|gb|AFH29794.1| flap endonuclease 1 [Macaca mulatta]
gi|384939550|gb|AFI33380.1| flap endonuclease 1 [Macaca mulatta]
Length = 380
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|296218462|ref|XP_002755459.1| PREDICTED: flap endonuclease 1 [Callithrix jacchus]
Length = 380
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKRLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASESKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|432330136|ref|YP_007248279.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
gi|432136845|gb|AGB01772.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
Length = 333
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLA--RFYRSTIDASTLPVAEEGIL 109
HL FR N AK G PVFV DG P+ LK QA + R R T E G
Sbjct: 58 HLSGILFRISNFMAK-GIKPVFVFDGKPTQLK-QATIEERRKLRDTAGEKWREAVERGDE 115
Query: 110 VE-----RNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E R+ T + ++ ELL L G+PV++A GE EA A + + G I+ D
Sbjct: 116 AEAYKQARSSTRVDDTIIRTSRELLGLMGIPVVQAPGEGEAQAAFMVARGDCLYVISQDY 175
Query: 163 DAFLFGAKCVVKCIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIGND 213
D LFGA +V+ + + K E +++ AGL L R+ LI + +L+G D
Sbjct: 176 DTLLFGAPTLVRNLTVSGKRKIRGRQITVNPERIVLAETLAGLKLTREQLIEIGILVGTD 235
Query: 214 HDLNGVQGIGLDTALQFVQN 233
+ GV+G+G T L+ VQ
Sbjct: 236 FN-PGVEGVGAKTGLKIVQK 254
>gi|332249905|ref|XP_003274094.1| PREDICTED: flap endonuclease 1 isoform 1 [Nomascus leucogenys]
gi|332249907|ref|XP_003274095.1| PREDICTED: flap endonuclease 1 isoform 2 [Nomascus leucogenys]
gi|441604271|ref|XP_004087863.1| PREDICTED: flap endonuclease 1 [Nomascus leucogenys]
Length = 380
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|61365237|gb|AAX42675.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61365242|gb|AAX42676.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61369466|gb|AAX43341.1| flap structure-specific endonuclease 1 [synthetic construct]
Length = 381
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|265141450|gb|ACY74444.1| flap endonuclease [Carukia barnesi]
Length = 236
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++ + HL F+RTI + G P++V DG
Sbjct: 29 RKIAIDASMSIYQFLIAVRSDGSQLTNEEGETTSHLMGIFYRTIRMVEN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF----LKCVQ----ECVELLEL 129
P +KS R R L VA+E E + F +K Q EC +LL+L
Sbjct: 88 KPPEMKSGELTKRTERREEAQKQLEVAQETGDTENIEKFSRRLVKVTQQHNNECKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P ++A EAEA CA+L G V A T D D FG+ +++ K P + Y
Sbjct: 148 MGIPYIEAPCEAEAQCAELVKGGKVFAAATEDMDCLTFGSNVMLRHLTFSEARKMPIQEY 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDH 214
+ + GLGL + I + +L+G D+
Sbjct: 208 HLPKVLDGLGLSQDEFIDLCILLGCDY 234
>gi|61680058|pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680059|pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680060|pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 28 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 86
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 87 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 146
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 147 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 206
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 264
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 265 NKYPVPENW 273
>gi|156045904|ref|XP_001589507.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980]
gi|154693624|gb|EDN93362.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1188
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ EC LL LFG+P + A EAEA CA+L G VD +T DSD FLFG V K +
Sbjct: 888 MITECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDIFLFGGTRVYKNLF- 946
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
N+ + ECY +SD+E L L R LI+++ L+G+D+
Sbjct: 947 NSNKLVECYLLSDLEKELSLSRDQLISIAHLLGSDY 982
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L L KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVTG-LWTIVQPCARPTPLPALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARL 88
FR I G PVFV DG LK Q L
Sbjct: 59 FRRICKLLFHGIKPVFVFDGGAPILKRQTVL 89
>gi|4758356|ref|NP_004102.1| flap endonuclease 1 [Homo sapiens]
gi|114637922|ref|XP_001149352.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan troglodytes]
gi|297688500|ref|XP_002821719.1| PREDICTED: flap endonuclease 1 isoform 1 [Pongo abelii]
gi|297688502|ref|XP_002821720.1| PREDICTED: flap endonuclease 1 isoform 2 [Pongo abelii]
gi|332836633|ref|XP_001149490.2| PREDICTED: flap endonuclease 1 isoform 4 [Pan troglodytes]
gi|397516600|ref|XP_003828512.1| PREDICTED: flap endonuclease 1 isoform 1 [Pan paniscus]
gi|397516602|ref|XP_003828513.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan paniscus]
gi|410045196|ref|XP_003951955.1| PREDICTED: flap endonuclease 1 [Pan troglodytes]
gi|426368750|ref|XP_004051365.1| PREDICTED: flap endonuclease 1 isoform 1 [Gorilla gorilla gorilla]
gi|426368752|ref|XP_004051366.1| PREDICTED: flap endonuclease 1 isoform 2 [Gorilla gorilla gorilla]
gi|426368754|ref|XP_004051367.1| PREDICTED: flap endonuclease 1 isoform 3 [Gorilla gorilla gorilla]
gi|729475|sp|P39748.1|FEN1_HUMAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNase
IV; AltName: Full=Flap structure-specific endonuclease
1; AltName: Full=Maturation factor 1; Short=MF1;
Short=hFEN-1
gi|21668123|gb|AAM74238.1|AF523117_1 flap structure-specific endonuclease 1 [Homo sapiens]
gi|642090|gb|AAA91331.1| endonuclease [Homo sapiens]
gi|704377|gb|AAB32522.1| DNase IV=nuclear 42 kda 5' -> 3' exonuclease [human, HeLa cells,
Peptide, 380 aa]
gi|3169155|gb|AAC23394.1| FEN1_HUMAN [Homo sapiens]
gi|3980293|emb|CAA54166.1| flap endonuclease-1 [Homo sapiens]
gi|12653113|gb|AAH00323.1| Flap structure-specific endonuclease 1 [Homo sapiens]
gi|49168608|emb|CAG38799.1| FEN1 [Homo sapiens]
gi|54695918|gb|AAV38331.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|60813555|gb|AAX36265.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|60813577|gb|AAX36266.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355090|gb|AAX41100.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355958|gb|AAX41194.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61362985|gb|AAX42314.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|119594378|gb|EAW73972.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|189053461|dbj|BAG35627.1| unnamed protein product [Homo sapiens]
gi|208968397|dbj|BAG74037.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|410220904|gb|JAA07671.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410267972|gb|JAA21952.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410301536|gb|JAA29368.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410335329|gb|JAA36611.1| flap structure-specific endonuclease 1 [Pan troglodytes]
Length = 380
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|317376212|sp|B2VTT3.2|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 20/231 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMSETGETTSHLMGLFYRTMRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R T + A+E E + F + +EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKTEAHAAAEEAKETGTAEDVEKFSRRTVRVTREHNEECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP
Sbjct: 148 MGIPYIVAPTEAEAQCAALARGGKVYAAASEDMDTLTFDTPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ + GL ++RK I + +L+G D+ L+ ++GIG TAL+ ++ ++ E
Sbjct: 208 HLDKVLEGLQMERKQFIDLCILLGCDY-LDPIKGIGPSTALKLIREHNDLE 257
>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
gi|189044441|sp|A8M9L3.1|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
Length = 350
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 22/215 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEGILV 110
HL +RTINL ++G PV+V DG P LK + R R + EEG
Sbjct: 61 HLSGLLYRTINLL-EYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGKKS 119
Query: 111 ERNQTFLKC-------VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + + V E LL+ G+P ++A E EA A + S+G V A + D D
Sbjct: 120 EARKYAQRALFITSDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDYD 179
Query: 164 AFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLK-RKHLIAMSLLIG 211
+FLFGA +V+ + + + E ++D+ L L+ R LI +++L+G
Sbjct: 180 SFLFGAPRLVRNLTISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILLG 239
Query: 212 NDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHK 245
D++ G+ GIG AL+ +Q + S D+++N + K
Sbjct: 240 TDYNPEGIPGIGPQRALRLIQEYGSLDKLMNTVLK 274
>gi|291409580|ref|XP_002721064.1| PREDICTED: flap structure-specific endonuclease 1 [Oryctolagus
cuniculus]
Length = 380
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGEVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYAVPENW 274
>gi|451854672|gb|EMD67964.1| hypothetical protein COCSADRAFT_187007 [Cochliobolus sativus
ND90Pr]
Length = 934
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 30/211 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSV--PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP 81
R R+A+D S W+ Q + + K+S P LR ++R + L + PVFV DG P
Sbjct: 31 RPLRIAIDTSIWLFQIQASKGKSSQGGTNPALRTFYYRLLRLIS-LAIHPVFVFDGPNKP 89
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEA 141
R R+ +++P FL +LL+ FG P+ A GEA
Sbjct: 90 P-----FKRNKRTGPTVASIP------------EFL-----AKQLLKQFGYPIHLAPGEA 127
Query: 142 EALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECYCISDIE---AGL 196
EA CA L EG VDA ++ D D +FG+ ++ P + K P +E
Sbjct: 128 EAECALLQREGIVDAVLSEDVDTLMFGSGVTLRNWSPEKSGKTPTHVNVYDAVETKNGPS 187
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
GL R+ +I ++L+ G D+ G+ G G TA
Sbjct: 188 GLDREGMILVALMSGGDYVPEGIPGCGPKTA 218
>gi|340500548|gb|EGR27416.1| hypothetical protein IMG5_195980 [Ichthyophthirius multifiliis]
Length = 989
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
Q+ +LL LFG+P +++ EAEA CA L VD +T DSD FLFG + V + +
Sbjct: 665 QQIKQLLILFGIPWVESPSEAEAQCAFLEMHQLVDGIVTDDSDVFLFGGRKVYRNLFSQN 724
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ I +IE LGL R+ LI M+L +G+D+ L G++G+G+ + + V F
Sbjct: 725 SQYVRYINIENIEKDLGLDRQRLILMALFLGSDYTL-GIKGVGIVNSFEIVTAF 777
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQ---HETAIKKNSVPKPHLRLTF 57
MGV G W +L P R ++ L +++A+D+S W+++ K + HL F
Sbjct: 1 MGVFG-LWTILSPAGRKLNIEALTGQKLAIDVSIWVLRLIYGSLQSKNENFKNIHLICIF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKS----QARLARFYRS 94
R L + G PVFV DG P LK Q + R YR
Sbjct: 60 KRLCKLLS-LGIKPVFVFDGQPPELKKNTLYQRQKMREYRE 99
>gi|261244970|ref|NP_001159668.1| flap endonuclease 1 [Ovis aries]
gi|317376193|sp|C8BKD0.1|FEN1_SHEEP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256665367|gb|ACV04829.1| flap structure-specific endonuclease 1 [Ovis aries]
Length = 380
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN-QTFLKCV--------QECVELLE 128
P LKS LA+ +A + E + F K + EC LL
Sbjct: 88 KPPQLKS-GELAKRSERRAEAEKQLQQAQAAGAETEVEKFTKRLVKVTKQHNDECKHLLS 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFEC 186
L G+P L A EAEA CA L G V A T D D FG+ +++ + + K P +
Sbjct: 147 LMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHK 245
+ +S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 FHLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP 265
Query: 246 IGNGDIPQYW 255
+P+ W
Sbjct: 266 -NKYPVPENW 274
>gi|82187497|sp|Q6TNU4.1|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio]
gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio]
Length = 380
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 108/234 (46%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLES-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + +EC +LL L
Sbjct: 88 KPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKAGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
S I + L + I + +L+G D+ ++GIG A+ + Q+ S +EIL
Sbjct: 208 HFSRILQDMELTHQQFIDLCILLGCDY-CGTIKGIGPKRAIDLIKQHGSIEEIL 260
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLT-----FFRTINLFAKFG 68
F+ +R K + D S I+ +T+I N S HL+L+ F+RT+ F +
Sbjct: 12 FDAPASMRSKEIG-DYSGKIIALDTSIVVNQFRSALPGHLKLSPLAGLFYRTLA-FLEHD 69
Query: 69 AFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLE 128
PVFV+DG P P + +A L + +ST +S+ + T QEC+ LL
Sbjct: 70 IKPVFVLDGKP-PHQKRAVLEKRAQSTGWSSS----------QSPNTGSAFNQECLRLLH 118
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
L G+P +KA GEAEALCA L G V+A + D D FG +++ + Y
Sbjct: 119 LMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRDSEITEYS 178
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + L LK + + + +L+G D+ + + G+G AL+ ++
Sbjct: 179 LPKLLEALQLKYEEFVDLCILLGCDY-CDKIGGLGPSRALKLIK 221
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 129/278 (46%), Gaps = 27/278 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNSV--------P 49
MG+ G + + P+A EG + ++VA+D S + Q A++
Sbjct: 1 MGIKGLSQLIADIAPFAVKEGEIKQFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-----STIDASTLPVA 104
HL TF+RTI L G PV+V DG P LKS R R +D +T A
Sbjct: 61 TSHLMGTFYRTIRLLEN-GIKPVYVFDGKPPDLKSGELNKRAERREEAQKALDKATEAGA 119
Query: 105 EEGILVERNQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
E I + N+ +K + E ELL L G+P ++A EAEA CA L G V A T
Sbjct: 120 TEDI-EKFNRRLVKVTKHHANEAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATATE 178
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
D DA FG+ +++ K P + + + G L + I + +L+G D+ +
Sbjct: 179 DMDALTFGSNILLRHLTFSEARKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDY-CDT 237
Query: 219 VQGIGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYW 255
++GIG A++ + ++ S ++IL L + +P+ W
Sbjct: 238 IRGIGPKKAIELINKHRSIEKILEHLDR-QKYIVPEGW 274
>gi|406697519|gb|EKD00778.1| single-stranded DNA specific endodeoxyribonuclease [Trichosporon
asahii var. asahii CBS 8904]
Length = 1166
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL FG+P + A EAEA CA+L G VD IT DSD FLFG K I N + E
Sbjct: 808 LLRHFGIPYITAPMEAEAQCAKLAELGLVDGIITDDSDVFLFGGTQCFKNIF-NDNKFAE 866
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
C +D+E L L R+ LI++S L+G+D+ + G+ GIG AL+ + NF
Sbjct: 867 CILATDVERELSLTRERLISLSYLLGSDYTI-GLPGIGPVLALELLANF 914
>gi|443920093|gb|ELU40082.1| flap structure-specific endonuclease [Rhizoctonia solani AG-1 IA]
Length = 1377
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL LFG+P + A EAEA CA L G V+ IT DSD FLFGA V + + N + E
Sbjct: 956 LLRLFGVPFVNAPMEAEAQCAFLAQHGLVEGVITDDSDVFLFGAGRVYRNMF-NQSKTVE 1014
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
C+ +D++ LGL R+ LI+++ L+G+D+ G+ G+G A++ ++ F
Sbjct: 1015 CFLAADLDRELGLDRETLISLAYLLGSDY-TEGLPGVGPVVAMEIMKEF 1062
>gi|401888761|gb|EJT52712.1| hypothetical protein A1Q1_02762 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1245
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL FG+P + A EAEA CA+L G VD IT DSD FLFG K I N + E
Sbjct: 887 LLRHFGIPYITAPMEAEAQCAKLAELGLVDGIITDDSDVFLFGGTQCFKNIF-NDNKFAE 945
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
C +D+E L L R+ LI++S L+G+D+ + G+ GIG AL+ + NF
Sbjct: 946 CILATDVERELSLTRERLISLSYLLGSDYTI-GLPGIGPVLALELLANF 993
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL P R ++ L KR+A+D S W+ Q ++ ++ + H+ L F
Sbjct: 1 MGVKG-LWSLLNPVGRPVQIESLEGKRLAIDSSIWLYQFQSTMRDKEGRVLVNAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS--TLPVAEEGILVERNQT 115
R IN G PVFV DG LK ++ +A R + A+ +AE+ + + +
Sbjct: 59 LRRINKLLFHGIKPVFVFDGGAPALK-RSTIAERKRRKVGAAFNHAKMAEKLLAAQMRRE 117
Query: 116 FLKCVQE--------CVELLELFGMPVLKAKGE 140
++ QE V L +L G P A+ E
Sbjct: 118 AVRVAQEGGETIPENAVYLDQLEGRPPPPARTE 150
>gi|409095300|ref|ZP_11215324.1| flap endonuclease-1 [Thermococcus zilligii AN1]
Length = 340
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 29/245 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K+VAVD + Q + I++ + P HL F+RTINL + G
Sbjct: 16 LENLHGKKVAVDAFNAMYQFLSTIRQPDGTPLMDSKGRITSHLSGFFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKC-------VQE 122
P +V DG P K + R A E+G L E + ++ + +
Sbjct: 75 PAYVFDGKPPEFKKKEIEKRKEAREEAEEKWQEALEKGDLEEAKKYAMRATRVNEELISD 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+PV++A E EA A + ++G V A + D D+ LFGA +V+ + +
Sbjct: 135 AKKLLELMGIPVVQAPSEGEAQAAYMAAKGKVYASASQDYDSLLFGAPKLVRNLTITGRR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ LG+ R+ LI +++L+G D++ G++GIG AL V
Sbjct: 195 KLPGKEVYVEVKPELIVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKALMIV 254
Query: 232 QNFSE 236
+ ++
Sbjct: 255 KRIND 259
>gi|346322835|gb|EGX92433.1| DNA-repair protein rad2 [Cordyceps militaris CM01]
Length = 394
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 27/253 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLTNDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL L
Sbjct: 88 APPKLKSGELAKRFQRKQTALEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLAL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPFIVAPTEAEAQCAVLAKAGKVFAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ + GL ++RK + + +L+G D+ L+ + +G TAL+ ++ + E ++ +
Sbjct: 208 HLDKVLEGLNMERKQFVDLCILLGCDY-LDPIPKVGPTTALKLIREYGTLE--KVVEAMQ 264
Query: 248 NGD-----IPQYW 255
N IP+ W
Sbjct: 265 NDSKKKYIIPEDW 277
>gi|346976080|gb|EGY19532.1| DNA-repair protein rad2 [Verticillium dahliae VdLs.17]
Length = 394
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 20/225 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEAKEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ + KEP +
Sbjct: 148 MGVPFIIAPTEAEAQCAVLAKGGKVYAAASEDMDTLTFETPILLRHLTYSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + GLG++R + + +L+G D+ L+ V +G TAL+ ++
Sbjct: 208 HLDKVMEGLGMERNQFVDLCILLGCDY-LDPVPKVGPSTALKLIR 251
>gi|330689547|pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
gi|330689551|pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 28 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 86
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 87 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 146
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 147 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 206
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 264
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 265 NKYPVPENW 273
>gi|379991146|ref|NP_001244014.1| flap endonuclease 1 [Equus caballus]
Length = 380
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRGERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|443897481|dbj|GAC74821.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 1544
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ QE +L LFG+P + A EAEA CA+L S VD IT DSD FLFG + K +
Sbjct: 1055 QMAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLFGGTRIYKNMF 1114
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SE 236
N EC+ +SD++ LGL R+ L+ ++ +G+D+ G+ G+G A++ + F E
Sbjct: 1115 -NNNRIVECFLLSDMQRELGLDREKLVRLAYYLGSDY-TEGLAGVGPVVAMELLALFPGE 1172
Query: 237 DEIL 240
D +L
Sbjct: 1173 DGLL 1176
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---SVPKPHLRLTF 57
MGV G W LL+P AR ++ L KR+A+D S W+ + A++ ++ H+
Sbjct: 1 MGVQG-LWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKEGRTLSNAHILGFL 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTF 116
+R + L G PVFV DG +K + R R S AE+ + + Q
Sbjct: 60 WRILKLLF-HGVRPVFVFDGGAPVMKRKTLSGRKARKQGAKESHARTAEKLLNAQMRQAA 118
Query: 117 LKCVQEC 123
+K V E
Sbjct: 119 IKHVAEA 125
>gi|46117088|ref|XP_384562.1| hypothetical protein FG04386.1 [Gibberella zeae PH-1]
Length = 790
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 35/240 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D++ W Q++ A + P +R F+R + L A P+FV DG P
Sbjct: 31 RPLRIAIDVAIWQFQNQAAQGGTN---PEIRTLFYRLVRLLA-CPVEPIFVFDGPYKPA- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
L R +S+ R +F + L+ LFG + A GEAEA
Sbjct: 86 ----LKRNKQSS----------------RGSSFANA--QAKRLIRLFGCNMHDAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEA------GLG 197
CA L G VD +T D DA +FG +++ P +K +S ++A G
Sbjct: 124 ECALLQQHGIVDMVLTEDVDALMFGCTKMLRKWSPESKRSTNPTHVSLLDAKNLELGAQG 183
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGD 257
L R+ ++ ++L+ G D++ +G+ G G+ AL+ + E+ I K + + Q W D
Sbjct: 184 LDREGMVLVALMSGGDYNPDGLPGCGIKVALEAARAGFGKELCRI--KSADKEAIQAWRD 241
>gi|82914773|ref|XP_728841.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485391|gb|EAA20406.1| XPG I-region, putative [Plasmodium yoelii yoelii]
Length = 1274
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL+LFG+P +++ EAEA CA LN+ Y DA I+ DSD +F K ++K N K+ E
Sbjct: 936 LLDLFGIPYIQSPCEAEAQCAYLNNNNYCDAIISDDSDVIVFSGKTIIKNFF-NKKKTVE 994
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y + IE LGL + LI +S+L G D+ + GV G+G+ AL+ ++ F E L L +
Sbjct: 995 VYEKNLIERKLGLYQDDLINISMLCGCDYTI-GVHGVGIVNALEIIKAFPTFEDLKFLKE 1053
Query: 246 I 246
I
Sbjct: 1054 I 1054
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 48/272 (17%)
Query: 1 MGVGGKFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT 56
MG+ K DL++ A ++ + K +A+D S + Q A S L
Sbjct: 1 MGIT-KLADLIRSDAPDAISYKDITDYTGKVIALDTSIVVNQFRAATPLLS----PLTGL 55
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF 116
FFRT+ F + G PVFV DG P P ++ +L +R QT
Sbjct: 56 FFRTLT-FLEHGIKPVFVFDGKP----------------------PGEKKAVLEKRAQTA 92
Query: 117 LKC-----------VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ +EC++LL+ G+PV++A G+AEALCAQL EG V A + D D
Sbjct: 93 GRNYSNWTGTASSQTKECLQLLKCLGVPVIQAPGDAEALCAQLVREGTVHAVASEDMDTL 152
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
FGA +++ + Y + + L + K + + +L+G D+ + G+G
Sbjct: 153 PFGANILIRQLNAKKDSEVIEYSLPKLLEKLQIGHKEFVDLCILLGCDY-CEKIPGLGPK 211
Query: 226 TALQFVQNFS--EDEILNILHKIGNGDIPQYW 255
AL +Q ED +L+I K +P W
Sbjct: 212 RALTLIQKHRTIEDVVLHINRK--THPVPNIW 241
>gi|289192094|ref|YP_003458035.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
gi|288938544|gb|ADC69299.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
Length = 326
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 27/258 (10%)
Query: 3 VGGKFWDLL-KPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLRL----- 55
+G +F D + K FE L + K+VA+D + Q T+I+ K+ P + +
Sbjct: 1 MGVQFGDFIPKKIISFEDL---KGKKVAIDGMNALYQFLTSIRLKDGSPLRNRKGEITSA 57
Query: 56 ---TFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE------- 105
F++TI+L P++V DG P LK + R R R + + L + E
Sbjct: 58 YNGVFYKTIHLLEN-DITPIWVFDGEPPKLKEKTRKVR--REMKEKAELKMKEAIKKEDF 114
Query: 106 -EGILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E + ++L K V+ C LL L G+P ++A E EA + + +G V A ++ D
Sbjct: 115 EEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDY 174
Query: 163 DAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
DA L+G+ VV+ + TKE E ++++ L + LI +++ +G D++ GV+GI
Sbjct: 175 DALLYGSPRVVRNL-TTTKEMPELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGI 233
Query: 223 GLDTALQFVQNFSEDEIL 240
G A + V++ ++L
Sbjct: 234 GFKRAYELVRSGVAKDVL 251
>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|166973708|sp|A1RWY2.1|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 346
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 37/269 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KP 51
MGV K +L++P A+ L F K +A+D + Q I+ K+ P
Sbjct: 1 MGVDIK--ELVEPVAKEVELGFFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTS 58
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF---------YRSTIDASTLP 102
HL F+RTIN + + G PV+V DG P LK + R+ YR I+ L
Sbjct: 59 HLNGLFYRTIN-YIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDL- 116
Query: 103 VAEEGILVERNQTFLKC--VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
EE + + + L V + LL G+P ++A E EA A + +G A +
Sbjct: 117 --EEARIYAQQTSRLTAAMVHDAKLLLRYMGVPYVEAPSEGEAQAAYMVKKGDAWASGSQ 174
Query: 161 DSDAFLFGAKCVVKCIRPNTKEPF---ECYC-----ISDIEAGL---GLKRKHLIAMSLL 209
D D+ LFG+ +V+ + K + Y I ++E L G+ + L+ + +L
Sbjct: 175 DFDSLLFGSPRLVRNLAITGKRKLPRKDVYVEVKPEIVELEELLRVHGITHQQLVVIGIL 234
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+G D+ G +GIG+ AL+ V+ + E
Sbjct: 235 VGTDYAPEGARGIGVKKALKLVKELKDPE 263
>gi|442758321|gb|JAA71319.1| Putative xp-g/rad2 dna repair endonuclease [Ixodes ricinus]
Length = 348
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 132/301 (43%), Gaps = 49/301 (16%)
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGN 248
++DIE+ LGL R+ LIA+++L G D+ +G+ +G +TAL+F+ + +++ L
Sbjct: 1 MADIESKLGLNREKLIALAVLSGCDYS-SGLPSVGKETALKFLHSLQHVDVIERLR---- 55
Query: 249 GDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGC 308
++ D K E + ++M + K SHC+ C H GT+ +H CE C D + C
Sbjct: 56 ----SWFRDQKY--EMLEKKVDAM-VKKDSHCTHCQHLGTRSSHQTNGCEAC--DTKKTC 106
Query: 309 LK-KPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETN--------FPNDEIVTM 359
+P+ C C HE IK K+ LE FP ++++
Sbjct: 107 RPVQPESADCKCEW------------HEQSVIKQKWKLELELRKKAKQVKMFPPEDVIRE 154
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
+L +N+ + ++W P T F+ W+ R+ + P+L+ +LR
Sbjct: 155 FLNKND----KVERVDVAWTRPKTSQFESFMSNTLRWKGQDSRENLFPVLTCWHLRNKND 210
Query: 420 NPVQTLLCGQYEFDSIRRVKIRY--GHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFM 477
N T L IR VK R G + V+W+ A G T L E++
Sbjct: 211 NTHDTGLM------PIRIVKERVVQGADFFEVEWQ--AEEFEGTPPTTTEPQKLFEEKYP 262
Query: 478 E 478
E
Sbjct: 263 E 263
>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
gi|392864029|gb|EAS35174.2| flap endonuclease 1 [Coccidioides immitis RS]
Length = 395
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGFFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A A+E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELAKRMARKQEAAEQHEEAKETGTAEDVEKFSRRTVRVTREHNEECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GLG+ RK + + +L+G D+ ++ + +G +TAL+ +++
Sbjct: 208 HLERVLEGLGMDRKQFVDLCILLGCDY-VDPIPKVGPNTALKMIRD 252
>gi|444513068|gb|ELV10260.1| Flap endonuclease 1 [Tupaia chinensis]
Length = 380
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDMLQNEEGDTTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFSKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLSQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|229577369|ref|NP_001153363.1| mutagen-sensitive 201 [Nasonia vitripennis]
Length = 1167
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P + A EAEA CA L D IT DSD +LFG CV K N K
Sbjct: 777 EAQELLRLFGVPYIVAPMEAEAQCAYLEQIKLTDGTITDDSDIWLFGGHCVYKNFFDNNK 836
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ + DIE L R+ +I ++LL+G+D+ NG+ G+G TAL+ + F
Sbjct: 837 RVLQ-FLSQDIEHHFKLSRREMIQLALLVGSDY-TNGLAGVGPVTALEILAAF 887
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI---VQHETAIKKNSVPKPHLRLTF 57
MGV G W LL + L+ L K +A+D+S WI +Q + N++P HL +
Sbjct: 1 MGVLG-LWRLLDATGKPVPLETLEGKVLAIDISIWIHQVIQGYQDRRGNALPNAHL-IGL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS 99
F I F PVFV DG LK R +I AS
Sbjct: 59 FNRICKLMYFKIKPVFVFDGGVPLLKKNTIATRRKLKSIAAS 100
>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
Length = 350
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 36/277 (12%)
Query: 1 MGVGGKFWDLLKPYARF--EGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP-------- 49
MGV K DL+ A+ E L LR + V +D + Q TAI++ + P
Sbjct: 1 MGVNLK--DLIPEEAKMVIEDLRMLRGRIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRI 58
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDAST 100
HL F+RTIN+ G P +V DG P +K++ ++ Y +
Sbjct: 59 TSHLSGLFYRTINILEN-GIKPAYVFDGKPPEIKAREIEKRRKIREDASKKYEEALRRGD 117
Query: 101 LPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
+ A ++ T + V + +LL+ G+P ++A E EA A + +G A +
Sbjct: 118 VEAARRYAMMSAKLTD-EMVHDAKKLLDAMGIPWIQAVAEGEAQAAYIVGKGDAWASASQ 176
Query: 161 DSDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLL 209
D D+ LFG+ +++ + + + E + + LG+ R+ LI ++LL
Sbjct: 177 DYDSLLFGSPRLIRNLTISGRRKLPRKNVYIEIKPEIIELKKLLEKLGITREQLIYVALL 236
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHK 245
IG D++ +GV+GIG ALQ V+ + D+IL + K
Sbjct: 237 IGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKAIPK 273
>gi|62859561|ref|NP_001017005.1| flap endonuclease 1 [Xenopus (Silurana) tropicalis]
Length = 382
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S I Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNMLQNEDGETTSHLMGMFYRTIRMI-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGIL----VER-NQTFLKCV----QECVELLE 128
P +KS LA+ +A L A E +E+ N+ +K +EC +LL
Sbjct: 88 KPPQMKS-GELAKRSERRAEAEKLLEAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLT 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFEC 186
L G+P + A EAEA CA L G V A T D DA FG +++ + + K P +
Sbjct: 147 LMGVPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ S +EI++ +
Sbjct: 207 FHLNRVMQDMGVSHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKSIEEIVDNI-D 264
Query: 246 IGNGDIPQYW 255
+ IP+ W
Sbjct: 265 LKKYPIPENW 274
>gi|350416440|ref|XP_003490949.1| PREDICTED: flap endonuclease 1-like [Bombus impatiens]
Length = 381
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N HL TF+RTI L + G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLTSVNGETTSHLMGTFYRTIRLVEQ-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVER----NQTFLKCVQE----CVELLEL 129
P LK R R L AEE E N+ +K +E +LL+L
Sbjct: 88 KPPNLKGGELAKRAERRDETQKLLRAAEEAGNAEDIEKFNRRLVKVTKEHAKEAKQLLQL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKMPVQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ LGL I + +++G D+ + ++G+G A++ ++
Sbjct: 208 HFDKVLKDLGLNHDEFIDLCIMLGCDY-TSSIKGVGPKRAIELIKT 252
>gi|15669635|ref|NP_248448.1| flap endonuclease-1 [Methanocaldococcus jannaschii DSM 2661]
gi|17432937|sp|Q58839.1|FEN_METJA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157829719|pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|157829720|pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|1592090|gb|AAB99454.1| DNA repair protein RAD2 (rad2) [Methanocaldococcus jannaschii DSM
2661]
Length = 326
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 27/258 (10%)
Query: 3 VGGKFWDLL-KPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLRL----- 55
+G +F D + K FE L + K+VA+D + Q T+I+ ++ P + +
Sbjct: 1 MGVQFGDFIPKNIISFEDL---KGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSA 57
Query: 56 ---TFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE------- 105
F++TI+L P++V DG P LK + R R R + + L + E
Sbjct: 58 YNGVFYKTIHLLEN-DITPIWVFDGEPPKLKEKTRKVR--REMKEKAELKMKEAIKKEDF 114
Query: 106 -EGILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E + ++L K V+ C LL L G+P ++A E EA + + +G V A ++ D
Sbjct: 115 EEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDY 174
Query: 163 DAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
DA L+GA VV+ + TKE E ++++ L + LI +++ +G D++ GV+GI
Sbjct: 175 DALLYGAPRVVRNL-TTTKEMPELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGI 233
Query: 223 GLDTALQFVQNFSEDEIL 240
G A + V++ ++L
Sbjct: 234 GFKRAYELVRSGVAKDVL 251
>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
gi|28380017|sp|Q8TXU4.1|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
Length = 348
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 27/246 (10%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVP--------KPHLRLTFFRTINLFAKFGAFP 71
L L + +A+D + Q T I K+ P HL +RT+NL + G P
Sbjct: 17 LRALAGREIAIDAFNALYQFLTTIMKDGRPLMDSRGRITSHLNGLLYRTVNLVEE-GIKP 75
Query: 72 VFVVDGTPSPLKSQARLARFYRSTIDASTLPVA---EEGILVERNQTFL--KCVQECVEL 126
V+V DG P LK + R R L A EE R L V++ L
Sbjct: 76 VYVFDGEPPDLKRETLERRRERKEEAMEKLRRAKTKEEREKYARQVARLDESLVEDAKRL 135
Query: 127 LELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI-------RPN 179
L+L G+P ++A E EA CA + G V A + D D+ LFG+ +V+ I P+
Sbjct: 136 LDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVGKRKHPH 195
Query: 180 TKEPFEC----YCISDIEAGLGLK-RKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
T E E + D+ LGL+ R+ L+ +++L+G D++ +GV GIG ALQ ++ +
Sbjct: 196 TGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRALQLIRKY 255
Query: 235 -SEDEI 239
S DE+
Sbjct: 256 GSLDEL 261
>gi|46138549|ref|XP_390965.1| hypothetical protein FG10789.1 [Gibberella zeae PH-1]
gi|408391605|gb|EKJ70977.1| hypothetical protein FPSE_08836 [Fusarium pseudograminearum CS3096]
Length = 395
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLTNESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF----LKCVQE----CVELLEL 129
P LKS RF R L A+E E + F ++ +E C LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDIEKFSRRTVRVTREHNADCQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL ++RK + + +L+G D+ L+ + +G TAL+ +++
Sbjct: 208 RLDKVLEGLNMERKQFVDLCILLGCDY-LDPIPKVGPSTALKMIRD 252
>gi|50287803|ref|XP_446331.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525638|emb|CAG59255.1| unnamed protein product [Candida glabrata]
Length = 992
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
++ + +++ ELL FG+P + A EAEA CA+L + VD IT DSD FLFG K V
Sbjct: 726 DEVTMDMIKDVQELLARFGIPYITAPMEAEAQCAELVNLKLVDGIITDDSDVFLFGGKKV 785
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K + K E Y DI GLGL R+ +I ++ L+G+D+ G++G+G ++++ +
Sbjct: 786 YKNMF-QEKNYVEYYDSEDIYQGLGLTRETMIELAQLLGSDY-TTGIKGMGPVSSMEILA 843
Query: 233 NFSE 236
F +
Sbjct: 844 EFGD 847
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD++ P A+ L+ L D+R+AVD S WI Q A++ N++ H+ F
Sbjct: 1 MGVHS-FWDIVGPTAKPVRLESLHDRRMAVDASIWIYQFLKAVRDKEGNAIKSAHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF 116
FR + FG PVFV DG LK + R R + IL ++ QT
Sbjct: 59 FRRVCKLLYFGIKPVFVFDGGVPVLKRKTIQKRKERREGKRDNATNTAKKILAKQLQTL 117
>gi|213404960|ref|XP_002173252.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
gi|212001299|gb|EEB06959.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
Length = 1199
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ V+EC ELL FG+P + A EAEA CA+L VD +T DSD FLFG + + +
Sbjct: 825 EMVRECQELLRYFGLPYIVAPQEAEAQCAKLLELKLVDGVVTDDSDVFLFGGTRIYRNMF 884
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + E Y SD+E + RK LI ++ L+G+D+ G+ +G +A++ ++ F D
Sbjct: 885 -NQSKFVELYLSSDMERDFAIGRKQLIQLAYLLGSDY-TEGLSSVGPVSAVEILREFPGD 942
Query: 238 EIL 240
L
Sbjct: 943 NPL 945
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +L+P R L+ L +KR+A+D S WI Q A++ + H+ + F
Sbjct: 1 MGVTG-LWSILEPVNRPVKLETLANKRLAIDASIWIYQFLKAVRDKEGEQMKHSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA---RLARFYRSTIDASTL 101
FR I FG PVFV DG LK Q R AR DA+ +
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPMLKRQTIRKRQARRITHREDATRI 105
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 24/212 (11%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPKPHLRLT-----FFRTINLFAKFGAFPVFVVDGTPS 80
K +A+D S + Q +A+ HL+L+ F+RT+ F + PVFV+DG P
Sbjct: 12 KIIALDTSIVVNQFRSALPG------HLKLSPLAGLFYRTLA-FLEHDIKPVFVLDGKP- 63
Query: 81 PLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGE 140
P + +A L + +ST +S+ + T QEC+ LL L G+P +KA GE
Sbjct: 64 PNQKRAVLEKRAQSTGWSSS----------QGPNTGSAFNQECLRLLHLMGVPCIKAPGE 113
Query: 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKR 200
AEALCA L G V+A + D D FG +++ + Y + + L LK
Sbjct: 114 AEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRDSEITEYSLPKLLEALQLKY 173
Query: 201 KHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + + +L+G D+ + + G+G AL+ ++
Sbjct: 174 EEFVDLCILLGCDY-CDKIGGLGPSRALKLIK 204
>gi|317376168|sp|B1H158.1|FEN1_XENTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|169642201|gb|AAI60482.1| flap structure specific endonuclease 1 [Xenopus (Silurana)
tropicalis]
Length = 382
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S I Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNMLQNEDGETTSHLMGMFYRTIRMI-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGIL----VER-NQTFLKCV----QECVELLE 128
P +KS LA+ +A L A E +E+ N+ +K +EC +LL
Sbjct: 88 KPPQMKS-GELAKRSERRAEAEKLLEAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLT 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFEC 186
L G+P + A EAEA CA L G V A T D DA FG +++ + + K P +
Sbjct: 147 LMGVPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ S +EI++ +
Sbjct: 207 FHLNRVMQDMGVSHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKSIEEIVDNI-D 264
Query: 246 IGNGDIPQYW 255
+ IP+ W
Sbjct: 265 LKKYPIPENW 274
>gi|405117687|gb|AFR92462.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. grubii H99]
Length = 1222
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL FG+P + A EAEA CA+L G VD IT DSD FLFG K I N + E
Sbjct: 837 LLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGGQCFKNIF-NDAKYVE 895
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
C+ ++D+E L L R+ LI+++ +G+D+ L G+ G+G L+ + NF + L
Sbjct: 896 CFLLADVERELMLTRERLISLAYFLGSDYTL-GLPGVGPVMGLEILANFPGERGLY---- 950
Query: 246 IGNGDIPQYWGDIK 259
D ++WG ++
Sbjct: 951 ----DFKEWWGRVQ 960
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 14 YARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTFFRTINLFAKFGAF 70
+ R EG++ KR+A+D S W+ Q + ++ + H+ L F R IN G
Sbjct: 2 FTRIEGME---GKRLAIDSSIWLYQFQATMRDKDGRVLVNAHV-LGFLRRINKLLFHGIK 57
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTFLKCVQ 121
PVFV DG LK R + T A+ VAE+ + + +K Q
Sbjct: 58 PVFVFDGGAPALKRSTIAERKRKKTGAAANHAKVAEKLFAAQMRREAVKAAQ 109
>gi|186510818|ref|NP_190459.2| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|332644950|gb|AEE78471.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 536
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Query: 91 FYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNS 150
++ D P E + F ++E + G+ L EAEA CA LNS
Sbjct: 29 WFSQIADDGVEPSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNS 88
Query: 151 EGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLI 210
E DAC + DSD FLFGAK V + I CY + DI+ LGL R LIA++LL+
Sbjct: 89 ESLCDACFSFDSDIFLFGAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLL 148
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
G+D+ GV+G+ + A + V++ ++ IL
Sbjct: 149 GSDYS-QGVRGLRQEKACELVRSIGDNVIL 177
>gi|170102915|ref|XP_001882673.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642570|gb|EDR06826.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 567
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 106/235 (45%), Gaps = 30/235 (12%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
RV VD+S WI Q + A + P LR F+R +L A PVFV DG P
Sbjct: 39 RVGVDVSVWICQAQAAAHSQTGENPGLRTIFYRICHLLAN-SILPVFVEDGPGRP----- 92
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVE-LLELFGMPVLKAKGEAEALC 145
R+ R G+ V+ ++ ++ VE G P+ +A EAEA
Sbjct: 93 RVKR----------------GVNVKADKP--HWMEHYVEDFAREAGCPIYRAPAEAEAEL 134
Query: 146 AQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK---EPFECYCISDIEAGLGLKRKH 202
AQL + G ++A +T D D FLFG C++K PN K + Y +DI+ L R
Sbjct: 135 AQLTAHGLIEAVLTTDFDVFLFGGTCMIKP--PNIKADGDKIIYYNSTDIQDLASLTRAK 192
Query: 203 LIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGD 257
LI +++L G D+D G+ G G A Q Q D + K+ ++ + D
Sbjct: 193 LIFIAILSGGDYDQIGLPGCGSKIAYQLAQGGLADSLFEAATKLAQDELQDFLND 247
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 119/251 (47%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q + + HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTFLKCV--------QECVELL 127
G P LK Q LA+ Y DA+ L A E E + + K +C LL
Sbjct: 88 GKPPELKRQ-ELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFE 185
L G+PV++A EAEA CA L G V + D D+ FGA K + + P++++ P
Sbjct: 147 RLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ I L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+
Sbjct: 207 EFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENLN 265
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 266 K-ERYQIPEEW 275
>gi|396499081|ref|XP_003845386.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
Length = 423
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 27/253 (10%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 57 RKVAIDASMSIYSFLIAVRSGGEQLMNESGETTSHLMGLFYRTLRMVDN-GIKPLYVFDG 115
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R T + A+E E + F + +EC LL+L
Sbjct: 116 APPKLKSGELAKRFQRKTEAQAAAEEAKETGTAEDVEKFSRRTVRVTREHNEECRRLLKL 175
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 176 MGIPFIVAPTEAEAQCAVLARGGKVYAAASEDMDTLTFNSPILLRHLTFSEQRKEPILEI 235
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI- 246
+ + GL + R I + +L+G D+ L+ ++GIG TAL+ ++ + E ++ I
Sbjct: 236 HLDKVLEGLAMDRTQFIDLCILLGCDY-LDPIKGIGPSTALKLIREHKDLE--GVVKHIQ 292
Query: 247 ----GNGDIPQYW 255
G IP+ W
Sbjct: 293 SQPKGKLTIPEDW 305
>gi|148230426|ref|NP_001080960.1| flap endonuclease 1-A [Xenopus laevis]
gi|82071385|sp|P70040.1|FEN1A_XENLA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A;
Short=xFEN-1a
gi|1490870|gb|AAB06176.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|4106358|gb|AAD02814.1| flap endonuclease 1 [Xenopus laevis]
gi|213623454|gb|AAI69765.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|213625072|gb|AAI69761.1| 5' nuclease xFEN1a [Xenopus laevis]
Length = 382
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S I Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGMFYRTIRM-VEHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P +KS R R L AEE VE + F K + +EC +LL L
Sbjct: 88 KPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ + + K P + +
Sbjct: 148 MGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ + DEI++ + +
Sbjct: 208 HLNRVIQDIGITHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKTIDEIIDNI-DL 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 KKYPVPENW 274
>gi|195629924|gb|ACG36603.1| flap endonuclease 1a [Zea mays]
Length = 379
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQ---------HETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAS-----TLPVAEEGILVERNQTFLKCV----QECVELL 127
G P +K Q LA+ Y DA+ + V ++ + + ++ +K ++C LL
Sbjct: 88 GKPPDMKKQ-ELAKRYSKRDDATKDLTEAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFE 185
L G+PV++A EAEA CA L V A + D D+ FGA + + + P++K+ P
Sbjct: 147 RLMGVPVVEAPSEAEAECAALCINDKVFAVASEDMDSLTFGAPRXLRHLMDPSSKKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+
Sbjct: 207 EFDVAKVLEELELTMDQFIDLCILCGCDY-CDSIKGIGGQTALKLIRQHGSIESILENLN 265
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 266 K-DRYQIPEDW 275
>gi|170099279|ref|XP_001880858.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644383|gb|EDR08633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1137
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + + +L LFG+P + A EAEA CA+L + VD IT DSD FLFG + V K +
Sbjct: 741 QMITQIMTMLRLFGIPYITAPMEAEAQCAELVTLKLVDGIITDDSDVFLFGGQRVYKNMF 800
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E + ++D+ LGL + LI ++ L+G+D+ + G+ G+G A++ +Q F
Sbjct: 801 -NQSKTVEGFALADLTRDLGLDQDALIRLAYLLGSDY-VEGLPGVGPVVAMELLQEF 855
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W LL P R L+ + K +A+D S WI Q + ++ +++ H+ L F
Sbjct: 1 MGVKS-LWSLLSPVGRPIMLETMEGKSLAIDSSIWIYQFQATMRDKDGHALINAHV-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
R I+ +G PVFV DG LK
Sbjct: 59 LRRISKLLFYGIKPVFVFDGGAPTLK 84
>gi|429217578|ref|YP_007175568.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
gi|429134107|gb|AFZ71119.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 351
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 3 VGGKFWDLLKPYARFE-GLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPH 52
+G DL+ A+ E L L+ VA+D + Q AI++ + P H
Sbjct: 4 LGVNLKDLIPEKAKQEIDLKALKGYTVALDGYNMLYQFLAAIRQPDGTPLIDSKGNITSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
+ F+RTINL + G P++V DG P +K + R R A A++ +E
Sbjct: 64 ISGLFYRTINLIEE-GVKPIYVFDGKPPEMKKKEIEDRINRRQQYAEKYQKAKQEGKIEE 122
Query: 113 NQTFL--------KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + K V++ +LL G+P ++A + EA A + +G V A + D D+
Sbjct: 123 AKKYAQASTSLSNKMVEDAKQLLTYMGIPWVQAPADGEAQAAYMAKKGDVYATGSQDYDS 182
Query: 165 FLFGAKCVVKCIR-------PNTKEPFEC----YCISDIEAGLGLKRKHLIAMSLLIGND 213
LFG+ +++ + PN +E E ++D+ L + R+ LI + +L+G D
Sbjct: 183 LLFGSPKLLRNLAITGKRKLPNKEEYIEIKPELINLNDMLKALEITREQLIVIGILLGTD 242
Query: 214 HDLNGVQGIGLDTALQFVQ 232
+ +G +G G TAL++V+
Sbjct: 243 FNPDGFKGYGPKTALKYVK 261
>gi|355688549|gb|AER98539.1| flap structure-specific endonuclease 1 [Mustela putorius furo]
Length = 379
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGVPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLSQEQFVDLCILLGSDY-CESIRGIGPRRAVGLIQKHKSIEEIVRQLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|358369087|dbj|GAA85702.1| DNA-repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 395
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFARKSEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
++ GLG+ RK I + +L+G D+ L + +G +TAL+ +++
Sbjct: 208 HLNRALEGLGMDRKQFIDLCILLGCDY-LEPIPKVGPNTALKLIRD 252
>gi|28380019|sp|Q976H6.2|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|342306106|dbj|BAK54195.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 351
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 119/261 (45%), Gaps = 36/261 (13%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAFPVF 73
L+ K++++D + Q AI++ + P HL F+RTI++ + G P++
Sbjct: 19 LKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLFYRTISILEE-GIIPIY 77
Query: 74 VVDGTPSPLKSQARLARFYRSTI------DASTLPVAEEGILVERNQTFLKCVQECVE-- 125
V DG P K+Q R A T + L + Q ++ E E
Sbjct: 78 VFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSELKKYAQMSIRLTNEMAEES 137
Query: 126 --LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP 183
LL+ G+PV++A E EA A +N G A + D D+ LFGAK +++ + + K
Sbjct: 138 KELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTLSGKRK 197
Query: 184 F-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
E + + LGL R+ LI + +++G D++ +G++G G+ TA + ++
Sbjct: 198 LPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPDGIKGYGVKTAYRIIK 257
Query: 233 NFSEDEILNILHKIGNGDIPQ 253
+ E I G+IP+
Sbjct: 258 KYGSLE-----KAIEKGEIPK 273
>gi|384249049|gb|EIE22531.1| hypothetical protein COCSUDRAFT_6698, partial [Coccomyxa
subellipsoidea C-169]
Length = 262
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL+LFG+P + A EAEA CA L++ G VD +T D+D FLFGAK V + I N K
Sbjct: 4 DCQELLQLFGLPYIIAPSEAEAQCAWLDANGLVDGVVTDDNDVFLFGAKHVYRHIFENRK 63
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
E Y D+E LGL + LIA++LL+G+D+ GV GIG+ A++ V+ F +++ L
Sbjct: 64 Y-VEEYRTEDVERELGLDQDGLIALALLLGSDY-TEGVAGIGIVNAIETVKAFQKEDGL 120
>gi|145245469|ref|XP_001395002.1| DNA repair protein rad2 [Aspergillus niger CBS 513.88]
gi|317374885|sp|A5ABU3.1|FEN1_ASPNC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134079702|emb|CAK97128.1| unnamed protein product [Aspergillus niger]
Length = 395
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFARKSEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
++ GLG+ RK I + +L+G D+ L + +G +TAL+ +++
Sbjct: 208 HLNRALEGLGMDRKQFIDLCILLGCDY-LEPIPKVGPNTALKLIRD 252
>gi|82231650|sp|Q5I4H3.1|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
Length = 380
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQSEDGETTSHLMGMFYRTIRMLEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + +C +LL L
Sbjct: 88 KPPQLKSAELEKRGERRAEAEKMLAKAQELGEQENIDKFSKRLVKVTKQHNDDCKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L EG V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKEGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPVQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
+ I +GL + I + +L+G D+ ++GIG A+ + Q+ S +EIL
Sbjct: 208 HFNRILQDIGLTSEQFIDLCILLGCDY-CGTIKGIGPKRAIDLIRQHGSIEEIL 260
>gi|150402483|ref|YP_001329777.1| flap endonuclease-1 [Methanococcus maripaludis C7]
gi|150033513|gb|ABR65626.1| XPG I [Methanococcus maripaludis C7]
Length = 324
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 154/356 (43%), Gaps = 52/356 (14%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHL 53
+G +F DL+ P L FL++K VA+D I Q ++I+ KN
Sbjct: 1 MGVQFGDLI-PKTEI-SLKFLKNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTY 58
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVE- 111
F++TI + P++V DG LK + + R R+ S L E+ L E
Sbjct: 59 NGIFYKTIYMLEN-EMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYLEAKEQNNLEEM 117
Query: 112 ----RNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ FL K + +LLEL G+P + A E EA CA+L I+ D D+
Sbjct: 118 QKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDAFCVISQDYDSI 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA+ VVK I + K+ E + + L + LI +++LIG D++ G++G G
Sbjct: 178 LYGAENVVKNITSSNKD-IELIELQKTLSELNVSLNQLIDVAILIGTDYNPGGLKGFGPK 236
Query: 226 TALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGH 285
A+ V+ G + +Y +I++ E DE P + S + +
Sbjct: 237 KAIDTVK---------------KGQMEKYISEIENYSEIRKIFDE--PNVTSEYDTKLKT 279
Query: 286 PGTKRAHFKFSCEYCINDNN---EGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWW 338
P + E+ I +N+ + L P+ K + L NK K QK E W+
Sbjct: 280 PKKEEL-----AEFLIEENDFSKDRIL--PNIEKISNLLGNK----KSQKNLEAWF 324
>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
Length = 380
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++ HL TF+RTI L G PV+V DG
Sbjct: 29 RKIAIDASMSLYQFLIAVRSEGAQLVSVDGETTSHLMGTFYRTIRLVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEG---ILVER-NQTFLKCV----QECVELLEL 129
P +K+ R R L A E V++ N+ +K +E +LL+L
Sbjct: 88 KPPDMKAHQLNKRAERREEAEKELQKATEAGDTASVDKFNRRLVKVTKQRSEEAKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+PV+ A EAEA CA L G V A T D DA FGA +++ K P + +
Sbjct: 148 MGVPVVDAPCEAEAQCAALVKSGKVFAAATEDMDALTFGAPVLLRHLTFSEARKMPVQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
++++ GL LK+ I + +L+G D+ ++G+G A+ + Q+ + DE+L
Sbjct: 208 HLNNVLQGLELKQNEFIDLCILLGCDY-CGSIRGVGPKRAIDLIRQHRTLDEVL 260
>gi|169868548|ref|XP_001840845.1| hypothetical protein CC1G_03074 [Coprinopsis cinerea okayama7#130]
gi|116498003|gb|EAU80898.1| hypothetical protein CC1G_03074 [Coprinopsis cinerea okayama7#130]
Length = 918
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 116/286 (40%), Gaps = 71/286 (24%)
Query: 1 MGVGGKFWDLLKPYARFEGL-------------DFLRDKRVAVDLSYWIVQHETAIKKNS 47
MGV G W++L+P A+ L + +R R+ +D S W E + +
Sbjct: 1 MGVAG-LWEVLRPAAKPRSLTELSVTEGFQQNPEGVRGYRLGIDASIWFFHAEYGREGEN 59
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
P LR FFR L K P+FV DG P + R
Sbjct: 60 ---PVLRTLFFRCATLM-KSPFLPLFVFDGPKRPDWKRGR-------------------- 95
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
+ N+T K + +++E FG A GEAEA A LN G +D ++ D D FLF
Sbjct: 96 ---KINKTPSKLIPGMKQIVEAFGFEHRTAPGEAEAELAYLNRIGAIDGILSDDVDNFLF 152
Query: 168 GAKCVVK----CIRPNTKEPFE------------CYCISDI--EAGLGLKRKHLIAMSLL 209
GA V++ + N P + +SDI +GL R LI + LL
Sbjct: 153 GATAVIRNPSNTLSGNRSNPILNAAGKDDKNHSWVFKMSDITTHPQVGLTRGGLILIGLL 212
Query: 210 IGNDHDLNGVQGIGLDTAL------------QFVQNFSEDEILNIL 243
G D+ +GV+ G+ TA+ Q N ++D++ + L
Sbjct: 213 SGGDYHQSGVERCGIKTAVALAKCGFGDTLYQAATNLTKDQLPDFL 258
>gi|440301029|gb|ELP93476.1| Flap endonuclease, putative [Entamoeba invadens IP1]
Length = 374
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 30/280 (10%)
Query: 1 MGVGGKFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---------S 47
MG+ G LL+ YA + +D + VA+D S + Q +A++
Sbjct: 1 MGIKG-LSKLLQRYAPNSMKDGKIDQYFGRVVAIDASILVYQFISAVRDQEGSTLVNEYG 59
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
H+ TF+RTI L G P++V DG P +K++ R + L A+E
Sbjct: 60 ETTSHIIGTFYRTIKLMTS-GVKPIYVFDGKPPEMKTEELKKRQTNAKEAIEKLEKAKES 118
Query: 108 ILVERNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
E + +K + +L+EL G+P ++A EAE CA+L G A T
Sbjct: 119 GDKEEIKKQMKRTARMTKEQSDDVKKLVELMGIPAIEANCEAEGTCAELVKSGKCFATAT 178
Query: 160 ADSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN 217
D DA G+ V++ N KEP Y + I G I + +L+G D+
Sbjct: 179 EDMDALTLGSDIVLRKFSASDNKKEPIREYSLKSILEETGFTMDMFIDLCILLGCDY-CE 237
Query: 218 GVQGIGLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
++GIG TA + ++ + I N+L + G +P W
Sbjct: 238 TIKGIGPVTAFEMIKEYK--TIENLLKHLDKGKYIVPDGW 275
>gi|397780742|ref|YP_006545215.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
gi|396939244|emb|CCJ36499.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
Length = 333
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 21/200 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILV 110
HL FRT+N K G PVFV DG P K + R R+ + + +EG +
Sbjct: 58 HLSGILFRTVNFLEK-GIKPVFVFDGKPPEFKQETIEQRREVRNRANEAWKAALKEGDME 116
Query: 111 E-------RNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + ++ ELL+L G+PV++A E EA A + G V ++ D D
Sbjct: 117 EAYKQASASTRIDRHIIESSHELLDLLGIPVVQAPSEGEAQAAHMVRSGGVTYAVSQDYD 176
Query: 164 AFLFGAKCVVKCI----------RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGND 213
+ LFG+ +V+ + R T P E + +S + LG+ R+ LI + +L+G D
Sbjct: 177 SLLFGSPVLVRNLTVSGRRKARGRTITVNP-ERFVLSSVLDRLGVTREQLIEIGILVGTD 235
Query: 214 HDLNGVQGIGLDTALQFVQN 233
+ G++G+G TAL+ V++
Sbjct: 236 FN-PGIRGVGGKTALKVVRS 254
>gi|395852526|ref|XP_003798789.1| PREDICTED: flap endonuclease 1 [Otolemur garnettii]
Length = 380
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV++ DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGEVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYIFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
++ I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLNRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
IP+ W
Sbjct: 266 NKYPIPENW 274
>gi|317374910|sp|B4FHY0.1|FEN1_MAIZE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194695278|gb|ACF81723.1| unknown [Zea mays]
Length = 379
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQ---------HETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAS-----TLPVAEEGILVERNQTFLKCV----QECVELL 127
G P +K Q LA+ Y DA+ + V ++ + + ++ +K ++C LL
Sbjct: 88 GKPPDMKKQ-ELAKRYSKRDDATKDLTEAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFE 185
L G+PV++A EAEA CA L V A + D D+ FGA ++ + P++K+ P
Sbjct: 147 RLMGVPVVEAPSEAEAECAALCINDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+
Sbjct: 207 EFDVAKVLEELELTMDQFIDLCILCGCDY-CDSIKGIGGQTALKLIRQHGSIESILENLN 265
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 266 K-DRYQIPEDW 275
>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 119/251 (47%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q + + HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTFLKCV--------QECVELL 127
G P LK Q LA+ Y DA+ L A E E + + K +C LL
Sbjct: 88 GKPPELKRQ-ELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFE 185
L G+PV++A EAEA CA L G V + D D+ FGA K + + P++++ P
Sbjct: 147 RLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ I L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+
Sbjct: 207 EFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENLN 265
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 266 K-ERYQIPEEW 275
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 30/246 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K++A+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKS-QARLARFYRSTIDASTLPVAEEGILVERNQTFLKC-------VQE 122
PV+V DG P K + R R + +G + E + + +++
Sbjct: 75 PVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEMLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LL+L G+P+++A E EA A + +G V A + D D+ LFG +V+ + K
Sbjct: 135 AKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLTITGKR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ L + R+ LI +++L+G D++ G++GIG AL+ V
Sbjct: 195 KMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKKALEIV 254
Query: 232 QNFSED 237
+ +S+D
Sbjct: 255 K-YSKD 259
>gi|402224833|gb|EJU04895.1| hypothetical protein DACRYDRAFT_104789 [Dacryopinax sp. DJM-731 SS1]
Length = 1334
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 99 STLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACI 158
+TL LV L+ + + +L LFG+P A EAEA CA+L G V+ I
Sbjct: 952 NTLNQQRRAALVASEDVTLQMITQIQNMLRLFGIPYTVAPMEAEAQCAELVQLGLVEGII 1011
Query: 159 TADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
T DSD FLFG V K + N + EC+ +SD+ L L R LI ++ L+G+D+ ++G
Sbjct: 1012 TDDSDVFLFGGLRVFKNMF-NQSKTVECFLLSDLGRELSLDRDKLIRLAYLLGSDY-VDG 1069
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKS 260
+ +G A++ ++ F + + LHK ++W ++S
Sbjct: 1070 LPKVGPVVAMELLREFPGE---DGLHKFK-----EWWVKVQS 1103
>gi|302415469|ref|XP_003005566.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
gi|261354982|gb|EEY17410.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
Length = 308
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 20/225 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC +LL L
Sbjct: 88 APPKLKSGELAKRFQRKQEAKEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQKLLRL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ + KEP +
Sbjct: 148 MGVPFIIAPTEAEAQCAVLAKGGKVYAAASEDMDTLTFETPILLRHLTYSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + GLG++R + + +L+G D+ L+ V +G TAL+ ++
Sbjct: 208 HLDKVMEGLGMERNQFVDLCILLGCDY-LDPVPKVGPSTALKLIR 251
>gi|351699147|gb|EHB02066.1| Flap endonuclease 1 [Heterocephalus glaber]
Length = 380
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP--------KPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGETLQSEEGETTSHLMGMFYRTIRMM-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEARKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I L L ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQALNLTQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>gi|358394482|gb|EHK43875.1| hypothetical protein TRIATDRAFT_300264 [Trichoderma atroviride IMI
206040]
Length = 395
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL ++RK + + +L+G D+ L+ V +G TAL+ ++
Sbjct: 208 HLDRVLEGLNMERKQFVDLCILLGCDY-LDPVPKVGPTTALKLIRE 252
>gi|410722033|ref|ZP_11361349.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
gi|410597930|gb|EKQ52534.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
Length = 328
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 126/264 (47%), Gaps = 28/264 (10%)
Query: 3 VGGKFWDLLKPYA-RFEGLDFLRDKRVAVDLSYWIVQHETAIKK---------NSVPKPH 52
+G KF D++ P RFE LD K VA+D + I Q ++I++ N H
Sbjct: 1 MGVKFKDIVSPEEIRFEDLD---GKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSH 57
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF---------YRSTIDASTLPV 103
+RT +L K G P++V DG S LK + + R ++ ++ L
Sbjct: 58 FSGILYRTSSLVEK-GIKPIYVFDGQSSALKKETQQKRREIKEESERKWKEALEEGRLDD 116
Query: 104 AEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
A + V ++ + V+ +L++L G+P ++AKGE EA + + + G + D D
Sbjct: 117 ARK-FAVRSSRMSPEIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVARGDAWCVASQDYD 175
Query: 164 AFLFGAKCVVKCIR-PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
LFGA +VK + T+ E + I L + R+ L+ +++++G D + G++GI
Sbjct: 176 CMLFGAPRMVKNLTISGTQNTPELIELEKILGTLDITREQLVDLAIMVGTDFN-QGIKGI 234
Query: 223 GLDTALQFVQNFSEDEILNILHKI 246
G L+ ++ +I IL K+
Sbjct: 235 GAKKGLKLIEKHG--DIFQILEKL 256
>gi|226478114|emb|CAX72750.1| Flap endonuclease 1 [Schistosoma japonicum]
Length = 389
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--NSV------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ N++ HL F+RTI + G PV+V +G
Sbjct: 29 RKVAIDASMSIYQFLIAVRQEGNTLMNAEGESTSHLMGMFYRTIRMIES-GIKPVYVFEG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P +K+ R R L AE +E + F K + ++C +LL L
Sbjct: 88 KPPSMKAGELAKRADRRIESTKELAKAEAEEDLEAIEKFSKRLVKVTPAHNEDCKQLLRL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A GEAEA CA L G V A T D DA FG +++ K + +
Sbjct: 148 MGVPFVNAPGEAEAQCAALAKSGKVYAVGTEDMDALAFGTPVLLRHLTFSEARKMAIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
++ + GL L + + +L+G D+ ++ ++GIG AL + + S D +L + K
Sbjct: 208 NLASVLEGLSLTMDQFVDLCILLGCDY-VDTIRGIGPKKALDLLHKYHSIDCVLKNIDK- 265
Query: 247 GNGDIPQYW 255
+P W
Sbjct: 266 SKYPVPNDW 274
>gi|328791064|ref|XP_393585.4| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis mellifera]
Length = 1094
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL+LFG+P L A EAEA CA L D IT DSD +LFG +CV K N K
Sbjct: 734 EAQELLQLFGIPYLVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQCVYKNFFDNNK 793
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E + DI+ L R +I ++LL+G+D+ G+ GIG TAL+ + F
Sbjct: 794 KVLE-FRACDIQHYFKLTRNEMIRLALLVGSDY-TTGLTGIGPVTALEILAAF 844
>gi|116203453|ref|XP_001227537.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88175738|gb|EAQ83206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 378
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R L A+E E
Sbjct: 46 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRFQRKQEANEGLEEAKETGTAE 104
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 105 DVEKFSRRTVRVTREHNEECQRLLKLMGIPYILAPTEAEAQCAVLARAGKVYAAASEDMD 164
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F +++ KEP + + + GL ++RK + + +L+G D+ L+ +
Sbjct: 165 TLCFNTPILLRHLTFSEQRKEPIQEIHVEKVLEGLNMERKQFVDLCILLGCDY-LDPIPK 223
Query: 222 IGLDTALQFVQ 232
+G TAL+ ++
Sbjct: 224 VGPSTALKLIR 234
>gi|45198651|ref|NP_985680.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|44984661|gb|AAS53504.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|374108910|gb|AEY97816.1| FAFR133Cp [Ashbya gossypii FDAG1]
Length = 970
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ +++ +LL +FG+P L A EAEA CA+L +D IT DSD FLFG V K +
Sbjct: 708 EMIRDIQQLLSIFGIPYLTAPMEAEAQCAELLRLKLIDGIITDDSDVFLFGGSKVFKNMF 767
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
K E Y I A LGL R IA++ L+G+D+ NG++GIG + ++ + N++
Sbjct: 768 -QEKNYVEYYNTETISAELGLDRLKFIALAQLMGSDY-TNGIKGIGPVSGIEILANYN 823
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD+L P AR L+ L + R+AVD S WI Q A + N + H+ + F
Sbjct: 1 MGVHA-LWDILGPTARPVKLESLSNNRMAVDASIWIYQFLKAARDKNGNRLKGAHI-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG PVFV DG PLK +
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGVPPLKRET 87
>gi|413946273|gb|AFW78922.1| flap endonuclease 1a [Zea mays]
Length = 523
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQ---------HETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 173 RKIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 231
Query: 77 GTPSPLKSQARLARFYRSTIDAS-----TLPVAEEGILVERNQTFLKCV----QECVELL 127
G P +K Q LA+ Y DA+ + V ++ + + ++ +K ++C LL
Sbjct: 232 GKPPDMKKQ-ELAKRYSKRDDATKDLTEAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLL 290
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFE 185
L G+PV++A EAEA CA L V A + D D+ FGA ++ + P++K+ P
Sbjct: 291 RLMGVPVVEAPSEAEAECAALCINDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVM 350
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+
Sbjct: 351 EFDVAKVLEELELTMDQFIDLCILCGCDY-CDSIKGIGGQTALKLIRQHGSIESILENLN 409
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 410 K-DRYQIPEDW 419
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNESGETTSHLMGLFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A A+E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELAKRIARKQEAAEQHEEAKETGTTEDVEKFSRRTVRVTREHNEECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 148 MGIPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GLG+ RK + + +L+G D+ L+ + +G +TAL+ +++
Sbjct: 208 HLDRVLEGLGMDRKTFVDLCILLGCDY-LDPIPKVGPNTALKLIRD 252
>gi|302900804|ref|XP_003048331.1| hypothetical protein NECHADRAFT_84053 [Nectria haematococca mpVI
77-13-4]
gi|256729264|gb|EEU42618.1| hypothetical protein NECHADRAFT_84053 [Nectria haematococca mpVI
77-13-4]
Length = 803
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 33/209 (15%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
R+A+D++ W Q + A + P +R F+R + L A PVFV DG P
Sbjct: 34 RIAIDIAIWQFQSQVAQGGTN---PAIRTLFYRLVRLLAA-PIKPVFVFDGPYKP----- 84
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCA 146
++ R RS R + L+ LFG P+ A GEAEA CA
Sbjct: 85 KIKRNKRSG----------------RGDALSNA--QAKRLIHLFGFPIHDAPGEAEAECA 126
Query: 147 QLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE---PFECYCISDIEAGL---GLKR 200
L G VDA ++ D D +FG +++ P +K P I E L GL R
Sbjct: 127 LLQQHGIVDAVMSEDVDTLMFGCTKMLRQWSPQSKRQTCPTHVSLIDKEEMRLVEQGLDR 186
Query: 201 KHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+ ++ ++L+ G D+D G+ G G A++
Sbjct: 187 EGMVLVALMSGGDYDPVGIAGCGPKVAVE 215
>gi|57099749|ref|XP_533271.1| PREDICTED: flap endonuclease 1 isoform 1 [Canis lupus familiaris]
Length = 380
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
++ I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLNRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>gi|154276716|ref|XP_001539203.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414276|gb|EDN09641.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 826
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 32/230 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D+S W+ Q + + P LR F+R + L P+F+ DG P
Sbjct: 32 RPIRVAIDISIWLFQVQAGKGGTN---PELRTLFYRLVRLTG-LPVHPLFIYDGPQRPQY 87
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ +L ID + V + G ++ R++ L++LF P A GEAEA
Sbjct: 88 KRGKL-------IDRNNR-VGDLGRIIRRSK----------HLIDLFHFPHHTAPGEAEA 129
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAGLGLK 199
CA+L S G VDA ++ D DA +FG+K + K T E+G G K
Sbjct: 130 ECARLQSSGVVDAVMSDDVDAIMFGSKVTIMNFSKENSSGTNAATHVTLYQTEESGDGRK 189
Query: 200 RKHL------IAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
R L I +LL G D+ GV G A + +Q +E+L +
Sbjct: 190 RNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAREIIQAGFGNELLQAI 239
>gi|189191944|ref|XP_001932311.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973917|gb|EDU41416.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 395
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 12/197 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R T + A+E E
Sbjct: 63 HLMGLFYRTMRMVDN-GIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAEEAKETGTAE 121
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 122 DVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASEDMD 181
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F +++ KEP + + GL ++RK I + +L+G D+ L+ ++G
Sbjct: 182 TLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDY-LDPIKG 240
Query: 222 IGLDTALQFVQNFSEDE 238
IG TAL+ ++ ++ E
Sbjct: 241 IGPSTALKLIREHNDLE 257
>gi|2674207|gb|AAB88707.1| flap endonuclease 1 [Xenopus laevis]
gi|115528353|gb|AAI24978.1| Fen1-A protein [Xenopus laevis]
Length = 382
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAIDASMCIYQFLIAVRQDGNTLQNEEGETTSHLMGMFYRTIRM-VEHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P +KS R R L AEE VE + F K + +EC +LL L
Sbjct: 88 KPPQMKSGELAKRSERRAEAEKLLEAAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ + + K P + +
Sbjct: 148 MGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ + DEI++ + +
Sbjct: 208 HLNRVIQDIGITHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKTIDEIIDNI-DL 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 KKYPVPENW 274
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 19/199 (9%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA----RLARFYRSTIDASTLPVAEEG 107
HL FFRT+ K G PV++ DG P LK + R R + L ++
Sbjct: 58 HLSGVFFRTLRFLEK-GIRPVYIFDGKPPALKQETIESRREVRREAGVQWEAALARGDQE 116
Query: 108 ILVERNQTFLKCVQECV----ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
++ + + E + ELL L G+P ++A E EA A + + G V ++ D D
Sbjct: 117 EAYKQARASSRVTPEIIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYD 176
Query: 164 AFLFGAKCVVKCIRPNTKEPFECYCIS---------DIEAGLGLKRKHLIAMSLLIGNDH 214
+ LFGA +V+ + ++K + I+ ++ GLG+ R+ LI +LIG D
Sbjct: 177 SLLFGAPLLVRNLTVSSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIGTDF 236
Query: 215 DLNGVQGIGLDTALQFVQN 233
+ G++G+G TAL+ V+
Sbjct: 237 N-PGIRGVGPKTALKIVKK 254
>gi|330914981|ref|XP_003296859.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
gi|311330789|gb|EFQ95031.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
Length = 342
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 12/197 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R T + A+E E
Sbjct: 10 HLMGLFYRTMRMVDN-GIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAEEAKETGTAE 68
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 69 DVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAASEDMD 128
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F +++ KEP + + GL ++RK I + +L+G D+ L+ ++G
Sbjct: 129 TLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDY-LDPIKG 187
Query: 222 IGLDTALQFVQNFSEDE 238
IG TAL+ ++ ++ E
Sbjct: 188 IGPSTALKLIREHNDLE 204
>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|62510701|sp|Q9SXQ6.1|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A; AltName:
Full=OsFEN-1a
gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
Length = 380
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQH---------ETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+R+AVD S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 29 RRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAST--LPVAEEG---ILVERNQTFLKCV----QECVELL 127
G P LK Q LA+ Y DA+ EEG + + ++ +K +EC LL
Sbjct: 88 GKPPDLKKQ-ELAKRYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFE 185
L G+PV++A EAEA CA L V A + D D+ FGA ++ + P++K+ P
Sbjct: 147 RLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL ++
Sbjct: 207 EFEVAKVLEELELTMDQFIDLCILSGCDY-CDSIKGIGGQTALKLIRQHGSIESILENIN 265
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 266 K-DRYQIPEDW 275
>gi|317374863|sp|B8AW67.1|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
Length = 380
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQH---------ETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+R+AVD S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 29 RRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAST--LPVAEEG---ILVERNQTFLKCV----QECVELL 127
G P LK Q LA+ Y DA+ EEG + + ++ +K +EC LL
Sbjct: 88 GKPPDLKKQ-ELAKRYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFE 185
L G+PV++A EAEA CA L V A + D D+ FGA ++ + P++K+ P
Sbjct: 147 RLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL ++
Sbjct: 207 EFEVAKVLEELELTMDQFIDLCILSGCDY-CDSIKGIGGQTALKLIRQHGSIESILENIN 265
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 266 K-DRYQIPEDW 275
>gi|343172070|gb|AEL98739.1| endonuclease, partial [Silene latifolia]
gi|343172072|gb|AEL98740.1| endonuclease, partial [Silene latifolia]
Length = 325
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 24/241 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q + + HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFSRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAST-LPVA-----EEGILVERNQTFLKCVQ---ECVELL 127
G P LK Q LA+ Y DA+ L A +EGI +T Q +C +LL
Sbjct: 88 GKPPDLKKQ-ELAKRYSKRADATEDLSAAIEEGDKEGIEKFSKRTVKVTKQHNEDCKKLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFE 185
L G+PV++A EAEA CA L G V A + D D+ FGA K + + P++K+ P
Sbjct: 147 GLMGVPVVEAPSEAEAQCAALCKNGKVYAVASEDMDSLTFGACKFLRHLMDPSSKKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+
Sbjct: 207 EFDMAKVLEELNLTMDQFIDLCILSGCDY-CDNIKGIGGMTALKLIRQHGSIETILENLN 265
Query: 245 K 245
K
Sbjct: 266 K 266
>gi|409044610|gb|EKM54091.1| hypothetical protein PHACADRAFT_185071 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1025
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 113/269 (42%), Gaps = 51/269 (18%)
Query: 17 FEGLDF-LRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVV 75
FEG + R R+ +D S W E + K + P LRL FFR L AK +FV
Sbjct: 33 FEGNESGRRGYRIGIDASIWYQHGEHSTKAGA--NPELRLLFFRLARL-AKLPWLVLFVF 89
Query: 76 DGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVL 135
DG P + G V ++ T QE ++E FGM
Sbjct: 90 DG---------------------RERPTLKRGSRVGKSGTH-NLTQEFKAMIECFGMEWR 127
Query: 136 KAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK----CIRPNTKEP-------- 183
A+GEAEA A LN++G +DA IT D D +FGA+ V++ + N P
Sbjct: 128 MARGEAEAELAYLNAQGIIDAIITDDVDTLVFGARTVIRNSSITLAGNRNNPATDALGQK 187
Query: 184 -------FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
F I +GL R ++ ++LL G D+D NGV+G+G A +
Sbjct: 188 SDQHTMVFTSDRIGS-HPNIGLTRGGMVLIALLSGGDYD-NGVKGLGPKIAHGLARCGFG 245
Query: 237 DEILNILHKIGNGDIPQY---WGDIKSTE 262
D +L ++ G Y W D +TE
Sbjct: 246 DRLLTA-YRTGEAHFRAYLPRWRDELNTE 273
>gi|290992099|ref|XP_002678672.1| predicted protein [Naegleria gruberi]
gi|284092285|gb|EFC45928.1| predicted protein [Naegleria gruberi]
Length = 985
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 11/157 (7%)
Query: 89 ARFYRSTIDASTLPVAEEGILVERNQT---FLKCVQECVELLELFGMPVLKAKGEAEALC 145
ARF ++ D S P+ + + +++T F V +LL G+P L + EA+A C
Sbjct: 636 ARFEQAMFD-SDYPMID--LFNSKSKTTNLFFALVDLAKDLLTYLGVPYLVSPSEADAQC 692
Query: 146 AQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT----KEPFECYCISDIEAGLGLKRK 201
L+ VDA IT DSD FLFGA CV + + +T K E Y + +I LG R
Sbjct: 693 GFLSKHNLVDAVITEDSDLFLFGANCVYRNVFGSTRHIDKNIIEEYRMDNIFKVLGFTRT 752
Query: 202 HLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+LI ++LL+G+D+ +GV +G TA Q V F+ +E
Sbjct: 753 NLIQIALLLGSDY-TDGVHNVGPVTATQVVDAFNPEE 788
>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
Length = 954
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 110 VERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA 169
++R L+ +++ E+L+LFG+P + A EAEA C LN G V A I+ DSD FGA
Sbjct: 634 MQRYSQSLESLEKICEMLDLFGIPYMHAPSEAEAQCCFLNQSGEVYAVISDDSDTLPFGA 693
Query: 170 KCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+ ++K FE Y S I++ LGL ++ L ++++ G D+ +GV GIG+ AL+
Sbjct: 694 RRILKNFF--NSRVFEIYLSSRIKSELGLSQEQLALLAIICGCDY-TDGVCGIGIVNALE 750
Query: 230 FVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTK 289
++ + L D+ D+K+ + E+ K +H ++
Sbjct: 751 VIKAYPTFNDLYAFRAWATTDV-----DLKNATKDECPIREAY---KKAHINY------- 795
Query: 290 RAHFKFSCEY 299
R H+KFSC++
Sbjct: 796 RVHWKFSCDF 805
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++ ++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMSIYQFLIAVRHDGQVLQTESGETTSHLMGMFYRTIRMV-ESGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGI---LVER-NQTFLKCV----QECVELLEL 129
P +KS R R + L A+E VER N+ +K +EC LL L
Sbjct: 88 KPPDMKSGELAKRNERRSEAEKQLAQAQEAGDSENVERFNKRLVKVTKQHNEECKTLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L+A EAEA CA L G V T D D FG +++ + + K P + +
Sbjct: 148 MGIPYLEAPCEAEASCAALVKSGKVYGTATEDMDGLAFGTTILLRRMTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
++ I GL ++ I + +L+G D+ ++GIG A++ + Q+ +E+L H
Sbjct: 208 HLNKILQETGLSQEEFIDLCILLGCDY-CETIRGIGPKRAIELIRQHRCIEEVLK--HID 264
Query: 247 GNG-DIPQYW 255
GN +P W
Sbjct: 265 GNKYTVPGDW 274
>gi|451853401|gb|EMD66695.1| hypothetical protein COCSADRAFT_35197 [Cochliobolus sativus ND90Pr]
Length = 395
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMSETGETTSHLMGLFYRTMRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R T + A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKTEAQAAAEEAKETGTAEDVEKFSRRTVRVTKEHNAECQQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 148 MGIPYIVAPTEAEAQCATLAKGGKVYAAASEDMDTLTFASPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ + GL + +K I + +L+G D+ L+ ++GIG TAL+ ++ + E
Sbjct: 208 HLDKVLEGLEMDQKQFIDLCILLGCDY-LDPIKGIGPSTALKLIREHKDLE 257
>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
Length = 304
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 31/225 (13%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE-EGILV 110
HL F+RTI++ + G P++V DG P K+Q R L A+ EG +
Sbjct: 10 HLNGLFYRTISILEE-GIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAEGNI- 67
Query: 111 ERNQTFLKCVQ-----------ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
+ F K Q E ELL+ G+PV++A E EA A +N G A +
Sbjct: 68 -KTSEFKKYAQMSIRLSNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATAS 126
Query: 160 ADSDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSL 208
D D+ LFGAK +V+ + + K E + + LGL R+ LI + +
Sbjct: 127 QDYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGI 186
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
++G D++ +G++G G+ TA + ++ + E I G+IP+
Sbjct: 187 IVGTDYNPDGIKGYGVKTAYRIIKKYGSLE-----KAIEKGEIPK 226
>gi|148234716|ref|NP_001080984.1| flap endonuclease 1-B [Xenopus laevis]
gi|82071413|sp|P70054.1|FEN1B_XENLA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B;
Short=xFEN-1b
gi|1549393|gb|AAB08478.1| XFEN1b [Xenopus laevis]
gi|213623174|gb|AAI69390.1| Flap endonuclease 1 [Xenopus laevis]
gi|213626408|gb|AAI69394.1| Flap endonuclease 1 [Xenopus laevis]
Length = 382
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S I Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKVAVDASMCIYQFLIAVRQDGNMLQNEEGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGIL----VER-NQTFLKCV----QECVELLE 128
P +KS LA+ +A L A E +E+ N+ +K +EC +LL
Sbjct: 88 KPPQMKS-GELAKRSERRAEAEKLLEAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLS 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFEC 186
L G+P + A EAEA CA L G V A T D DA FG +++ + + K P +
Sbjct: 147 LMGIPYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ + +G+ + + + +L+G+D+ ++GIG A+ + Q+ + +EI++ +
Sbjct: 207 FHLNRVFQDIGINHEQFVDLCILLGSDY-CETIRGIGPKRAIDLIRQHKTIEEIIDNI-D 264
Query: 246 IGNGDIPQYW 255
+ IP+ W
Sbjct: 265 LKKYPIPENW 274
>gi|303277071|ref|XP_003057829.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460486|gb|EEH57780.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 806
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 135/322 (41%), Gaps = 39/322 (12%)
Query: 21 DFLRDKRVAVDLSYWIVQ--HETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGT 78
D + K +AVDL+ WI Q + A + P+ + F + + G P+ V+DG
Sbjct: 35 DRVEGKVLAVDLAEWIFQATSQPATAELFTPEGQVAKVVFERAANWLRHGCIPIGVIDGV 94
Query: 79 PSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAK 138
P P K AR+ + + V F + L G+P ++A
Sbjct: 95 PPPEK-LARMKQRHGMGATGCGGGV------------FGRLGDVAARTLRALGLPAVEAP 141
Query: 139 GEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGL 198
GEAEA CA +N+ G VD C T+D DA LFGA+ K I+ P E I EA
Sbjct: 142 GEAEATCAAMNAAGLVDGCATSDGDALLFGARVQFKTIKLFADAP-EQSRIERCEASWLR 200
Query: 199 KRKHL------------IAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ L +A++LL G D+D +G + +G A + V+ + ++
Sbjct: 201 ETMRLPGDEHEGVSDALVALALLAGGDYDPDGAKRVGSALASRVVKGLAAEDARERRKSG 260
Query: 247 GNGDIPQYWGDIKSTE---EAVSHSD-ESMPMIKSSHCSFCGHPGT---KRAHFKFSCEY 299
G P + + EA + D E++ + C C H G K+ CE
Sbjct: 261 SPGLRPSTTTLPRRLDAFLEAPADDDLEAIGKRGCTGCVRCKHEGGGKCKKQRHVHGCEA 320
Query: 300 CINDNNEGCLKKPDGFKCNCSL 321
C ++ GC+++ DG C C+
Sbjct: 321 CGTES--GCVER-DG-PCECAF 338
>gi|378733116|gb|EHY59575.1| flap endonuclease 1 [Exophiala dermatitidis NIH/UT8656]
Length = 395
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 20/225 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R A+E E + F + +EC LL+L
Sbjct: 88 APPKLKSGELAKRFARKNEANEQAEEAKETGTAEEVEKFSRRTVRVTREHNEECRRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ GLG+ R I + +L+G D+ ++ + +G +TAL+ ++
Sbjct: 208 HLDKTLEGLGMDRTQFIDLCILLGCDY-VDPIPKVGPNTALKLIR 251
>gi|303312977|ref|XP_003066500.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106162|gb|EER24355.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 359
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS R R A A+E E
Sbjct: 27 HLMGFFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHEEAKETGTAE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 86 DVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + + GLG+ RK + + +L+G D+ ++ +
Sbjct: 146 TLCFDSPILLRHLTFSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLGCDY-VDPIPK 204
Query: 222 IGLDTALQFVQN 233
+G +TAL+ +++
Sbjct: 205 VGPNTALKMIRD 216
>gi|70953099|ref|XP_745672.1| DNA repair endonuclease [Plasmodium chabaudi chabaudi]
gi|56526070|emb|CAH76802.1| DNA repair endonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 1281
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL FG+P +++ EAEA C+ LN+ Y DA I+ DSD +F K ++K N K+ E
Sbjct: 964 LLNFFGIPYIQSPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKNFF-NKKKTVE 1022
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y + IE LGL + LI +S+L G D+ + GV GIG+ AL+ V+ F + L IL +
Sbjct: 1023 VYEKNLIERKLGLYQDDLINISMLCGCDYTV-GVHGIGIVNALEVVKAFPTFDDLKILKE 1081
Query: 246 I 246
I
Sbjct: 1082 I 1082
>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
Length = 304
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 27/223 (12%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTI------DASTLPVAE 105
HL F+RTI++ + G P++V DG P K+Q R A T +
Sbjct: 10 HLNGLFYRTISILEE-GIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIK 68
Query: 106 EGILVERNQTFLKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
L + Q +K E E LL+ G+PV++A E EA A +N G A + D
Sbjct: 69 TSELKKYAQMSIKLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQD 128
Query: 162 SDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLI 210
D+ LFGAK +V+ + K E + + LGL R+ LI + +++
Sbjct: 129 YDSLLFGAKRLVRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIV 188
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
G D++ +G++G G+ TA + ++ + E I G+IP+
Sbjct: 189 GTDYNPDGIKGYGVKTAYRIIKKYGSLE-----KAIEKGEIPK 226
>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
Length = 324
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 154/356 (43%), Gaps = 52/356 (14%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHL 53
+G +F DL+ P L FL++K VA+D I Q ++I+ KN
Sbjct: 1 MGVQFGDLI-PKKEI-SLKFLKNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTY 58
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVE- 111
F++TI + P++V DG LK + + R R+ S L E+ L E
Sbjct: 59 NGIFYKTIYMLEN-EMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYLEAKEQNNLEEM 117
Query: 112 ----RNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ FL K + +LLEL G+P + A E EA CA+L I+ D D+
Sbjct: 118 QKYAKRANFLDKKIIDNSKKLLELMGIPYIDAPSEGEAQCAELVKANDAFCVISQDYDSI 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA+ VVK I + K+ E + + L + LI +++LIG D++ G++G G
Sbjct: 178 LYGAENVVKNITSSNKD-IELIELEKTLSELNVSLDQLIDVAILIGTDYNPGGLKGFGPK 236
Query: 226 TALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGH 285
A+ V+ G + +Y +I++ E DE P + S + +
Sbjct: 237 KAIDTVK---------------KGQMVKYISEIENYSEIRKIFDE--PNVTSEYDTLLKI 279
Query: 286 PGTKRAHFKFSCEYCINDNN---EGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWW 338
P + E+ I +N+ + L P+ K + L NK K QK E W+
Sbjct: 280 PKKEEL-----AEFLIEENDFSKDRVL--PNIEKISNLLGNK----KSQKSLEAWF 324
>gi|452000823|gb|EMD93283.1| hypothetical protein COCHEDRAFT_1223047 [Cochliobolus
heterostrophus C5]
Length = 926
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 30/211 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKK--NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP 81
R R+A+D S W+ Q + + K P LR ++R + L + PVFV DG P
Sbjct: 31 RPLRIAIDTSIWLFQIQASKGKFFQGGTNPALRTFYYRLLRLIS-LAIHPVFVFDGPNKP 89
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEA 141
R R+ + +++P FL +LL+ FG P+ A GEA
Sbjct: 90 P-----FKRNKRTGPNIASIP------------EFL-----AKQLLKQFGYPIHLAPGEA 127
Query: 142 EALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEPFECYCISDIE---AGL 196
EA CA L EG VDA ++ D D +FG+ ++ P + K P +E
Sbjct: 128 EAECALLQREGIVDAVLSEDVDTLMFGSGVTLRNWSPEKSGKTPTHVNIYDAVETKNGPS 187
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
GL R+ +I ++L+ G D+ G+ G G TA
Sbjct: 188 GLDREGMILVALMSGGDYVPEGIPGCGPKTA 218
>gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max]
Length = 382
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 116/250 (46%), Gaps = 23/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LK Q R+ + L A E E + F K +C LL
Sbjct: 88 GKPPDLKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFEC 186
L G+PV++A EAEA CA L G V A + D D+ FG+ K + + P++K+ P
Sbjct: 148 LMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVME 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ I L + I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+K
Sbjct: 208 FEVAKILEELNMTMDQFIDLCILSGCDY-CDSIRGIGGLTALKLIRQHGSIENILENLNK 266
Query: 246 IGNGDIPQYW 255
IP W
Sbjct: 267 -ERYQIPDNW 275
>gi|340717150|ref|XP_003397050.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Bombus
terrestris]
Length = 381
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 20/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ + HL TF+RTI L + G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSDGAQLTSVHGETTSHLMGTFYRTIRLVEQ-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEG----ILVERNQTFLKCVQECV----ELLEL 129
P LK R R L AEE + + N+ +K +E +LL+L
Sbjct: 88 KPPDLKGGELAKRDERRDETQKLLQAAEEAGNAKDIEKFNRRLVKVTKEHALETKQLLQL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ LGL I + +++G D+ + ++G+G A++ ++ E +
Sbjct: 208 HFDKVLEDLGLNHNEFIDLCIMLGCDY-TSSIKGVGPKRAIELIKTHGSLEKIVENLDTK 266
Query: 248 NGDIPQYW 255
IP+ W
Sbjct: 267 KFSIPEDW 274
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 21/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+RVA+D S + Q A+++ + HL F+RT+ + G P +V D
Sbjct: 29 RRVAIDASMSLYQFLIAVRQADGVQLASADGETTSHLMGMFYRTLRM-VDHGLKPCYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLP-VAEEGILVERNQTFLKC----VQECVELLELFG 131
G P LK+ R R L + E+ +++ + +K V E +LL L G
Sbjct: 88 GKPPVLKAHELDKRTERRKETEQKLAELTEQAEIMKHERRLVKVEQWHVAEAKKLLGLMG 147
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCI 189
+P + A GEAEA CA+L +G V A + D D + +++ KEP
Sbjct: 148 IPYVDAPGEAEAQCAELAKKGKVFAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEIDT 207
Query: 190 SDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKIGN 248
+ GLGL ++ L+ + +++G D+ ++G+G TAL+ + ++ S + I+ + GN
Sbjct: 208 ELVLQGLGLSQEQLVDLGIMLGCDY-CESIKGVGPVTALKLIKEHGSLENIVEFISSGGN 266
Query: 249 G--DIPQYW 255
+P+ W
Sbjct: 267 AKWKVPENW 275
>gi|328865755|gb|EGG14141.1| hypothetical protein DFA_11908 [Dictyostelium fasciculatum]
Length = 1098
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC ELL +FG+P + + EAE+ CA+L + G+VD +T DSD LF ++ + R
Sbjct: 786 ILKECHELLSMFGIPFITSPTEAESQCAELYNLGFVDGVVTDDSDILLFASQPDMAVYRN 845
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ + Y +I+ +GL+R+ LI+++LL+G D+ GV GIG+ A++ + F
Sbjct: 846 LFQHDPQKYQPKEIKRLMGLERQDLISLALLLGCDY-TPGVHGIGIVNAMEILAEF 900
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV K WDL++ L+ L+DK +A+D S WI +++K + P HL F
Sbjct: 1 MGVP-KLWDLVQECGEKVDLESLQDKVLAIDASIWIHTFLSSLKDGRGDITPNAHLVGFF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
+R + L F P+FV DG+ LK + R R
Sbjct: 60 WRILKLLT-FKVRPIFVFDGSVPFLKQKTIDERRKR 94
>gi|432927428|ref|XP_004081007.1| PREDICTED: flap endonuclease 1-like [Oryzias latipes]
Length = 380
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMCMYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E + F K + EC +LL L
Sbjct: 88 KPPQLKSSELEKRGERRAEAEKLLAQAQEMGEQENVEKFTKRLVKVTKQHNDECKKLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L EG V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKEGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
+ I + L ++ I + +L+G D+ ++GIG A+ + Q+ +EIL
Sbjct: 208 HFNRILQDMDLTKEQFIDLCILLGCDY-CGTIKGIGPKRAVDLIRQHGCIEEIL 260
>gi|350631707|gb|EHA20078.1| hypothetical protein ASPNIDRAFT_48158 [Aspergillus niger ATCC 1015]
Length = 359
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R + A+E E
Sbjct: 27 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHEEAKETGTAE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 86 DVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F +++ KEP + ++ GLG+ RK I + +L+G D+ L +
Sbjct: 146 TLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDY-LEPIPK 204
Query: 222 IGLDTALQFVQN 233
+G +TAL+ +++
Sbjct: 205 VGPNTALKLIRD 216
>gi|291235424|ref|XP_002737645.1| PREDICTED: DNA-repair protein complementing XP-G cells homolog
[Saccoglossus kowalevskii]
Length = 854
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P + + EAEA CA LN IT DSD +LFG K V K + N K
Sbjct: 662 EAKELLTLFGLPYITSVQEAEAQCAYLNLTDQTYGTITDDSDIWLFGGKRVYKNMF-NQK 720
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
+ ECY +IE L L R +I ++ L+G+D+ G+ GIG TA++ + F + L
Sbjct: 721 KFVECYIAENIERQLLLNRDKMIQIAYLVGSDY-TTGITGIGGVTAMELLHEFEGGDKLE 779
Query: 242 ILHK 245
L+K
Sbjct: 780 PLNK 783
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---KNSVPKPHLRLTF 57
MGV G W LL+ + L+ L K +AVD+S W+ Q ++ N + HL + F
Sbjct: 1 MGVKG-LWRLLESTGQPVTLESLEGKILAVDISLWLNQAVKGMRGRDGNPIANAHLVVLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
R L + PVFV DG LK Q R R
Sbjct: 60 NRICKLLF-YRIKPVFVFDGGVPLLKKQTLALRSQR 94
>gi|393232393|gb|EJD39975.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 400
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 115/265 (43%), Gaps = 37/265 (13%)
Query: 26 KRVAVDLSYWIVQHETAIKKN---------SVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S I Q A+++N HL F+RTI + G P +V D
Sbjct: 29 RKVAIDASMSIYQFLIAVRQNDGQLLTNEAGETTSHLMGFFYRTIRIVEN-GIKPAYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LKS RF R A+E E + F + +EC LL
Sbjct: 88 GKPPELKSGVLSKRFERREEAKEEGEEAKEVGTAEDVERFTRRTVKVTREHNEECRRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+PV+ A EAEA CA+L G V A + D D FGA + + K+P
Sbjct: 148 LMGIPVVIAPSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEAKKQPISE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILH- 244
+ GL + I + LL+G D+ L ++G+G +AL++++ S D+I++ L
Sbjct: 208 IDLQKALDGLNMTMDQFIELCLLLGCDY-LEPIKGVGPKSALKYMREMGSLDKIVDHLRE 266
Query: 245 --------------KIGNGDIPQYW 255
K G +P++W
Sbjct: 267 KQADRDEAVDAGKAKKGGVQVPEHW 291
>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
gi|73919352|sp|Q5JGN0.1|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
KOD1]
Length = 340
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 29/241 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K+VA+D + Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSGFFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKC-------VQE 122
P +V DG P K + R A E+G L E + ++ + +
Sbjct: 75 PAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKYAMRATRVNEELIND 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+PV++A E EA A + ++ V A + D D+ LFGA +V+ + +
Sbjct: 135 AKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNLTITGRR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ LG+ R+ LI +++L+G D++ G++GIG AL V
Sbjct: 195 KLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKALTIV 254
Query: 232 Q 232
+
Sbjct: 255 K 255
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 30/246 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L ++VA+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLNGRKVAIDAFNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLKC-------VQE 122
P +V DG P K + R R G L E + + +++
Sbjct: 75 PAYVFDGKPPEFKKKELEKRAEAREEAQEKWEEALARGDLEEAKKYAQRASKVNEMLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+P ++A E EA A + S+G+V A + D D+ LFG +V+ + K
Sbjct: 135 AKKLLELMGIPWVQAPSEGEAQAAYMASKGHVWASASQDYDSLLFGTPRLVRNLTITGKR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ L + R+ L+ +++L+G D++ G++GIG AL+ V
Sbjct: 195 KLPGKDIYVEVKPELIVLEEVLKELKITREKLVELAILVGTDYNPGGIKGIGPKKALEIV 254
Query: 232 QNFSED 237
+ +S+D
Sbjct: 255 K-YSKD 259
>gi|134045325|ref|YP_001096811.1| flap endonuclease-1 [Methanococcus maripaludis C5]
gi|132662950|gb|ABO34596.1| flap endonuclease 1 [Methanococcus maripaludis C5]
Length = 324
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 153/356 (42%), Gaps = 52/356 (14%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHL 53
+G +F DL+ P L FL++K VA+D I Q ++I+ KN
Sbjct: 1 MGVQFGDLI-PKTEI-SLKFLKNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTY 58
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVE- 111
F++TI + P++V DG LK + + R R+ S L E+ L E
Sbjct: 59 NGIFYKTIYMLEN-EMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYLEAKEQNNLEEM 117
Query: 112 ----RNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ FL K + +LLEL G+P + A E EA CA+L I+ D D+
Sbjct: 118 QKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDAFCVISQDYDSI 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA+ VVK I + K+ E + + L + LI +++LIG D++ G++G G
Sbjct: 178 LYGAENVVKNITSSNKD-IELIELEKTLSELNVSLDQLIDVAILIGTDYNPGGLKGFGPK 236
Query: 226 TALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGH 285
A+ V+ G + Y +I++ E DE P + S + +
Sbjct: 237 KAIDTVK---------------KGKMENYISEIENYSEIRKIFDE--PNVTSEYDTKLKT 279
Query: 286 PGTKRAHFKFSCEYCINDNN---EGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWW 338
P + E+ I +N+ + L P+ K + L NK K QK E W+
Sbjct: 280 PKKEEL-----AEFLIEENDFSKDRIL--PNIEKISNLLGNK----KSQKSLEAWF 324
>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
Length = 304
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA--RLARFYRSTIDASTLPVAEEGI- 108
HL F+RTI++ + G P++V DG P K+Q R + AE I
Sbjct: 10 HLNGLFYRTISILEE-GIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAEGNIK 68
Query: 109 ---LVERNQTFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
L + Q +K +E ELL+ G+PV++A E EA A +N G A + D
Sbjct: 69 TSELKKYAQMSIKLSNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQD 128
Query: 162 SDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLI 210
D+ LFGAK +V+ + + K E + + LGL R+ LI + +++
Sbjct: 129 YDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIV 188
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
G D++ +G++G G+ TA + ++ + E I G+IP+
Sbjct: 189 GTDYNPDGIKGYGVKTAYRIIKKYGSLE-----KAIEKGEIPK 226
>gi|452004834|gb|EMD97290.1| hypothetical protein COCHEDRAFT_1220743 [Cochliobolus
heterostrophus C5]
Length = 395
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 20/231 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNETGETTSHLMGLFYRTMRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R T + A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKTEAQAAAEEAKETGTAEDVEKFSRRTVRVTKEHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 148 MGIPYIIAPTEAEAQCAALAKGGKVYAAASEDMDTLTFASPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ + GL + +K I + +L+G D+ L+ ++GIG TAL+ ++ + E
Sbjct: 208 HLDKVLEGLAMDQKQFIDLCILLGCDY-LDPIKGIGPSTALKLIREHKDLE 257
>gi|358333862|dbj|GAA32436.2| flap endonuclease-1 [Clonorchis sinensis]
Length = 350
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 16/216 (7%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RTI + G PV+V +G P +K+ R R + L AEE +E
Sbjct: 27 HLMGMFYRTIRMIEN-GIKPVYVFEGKPPSMKAGELAKRTERRIESSRELAKAEEEEDLE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F K + +C ELL L G+P +KA GEAEA CA L G V A T D D
Sbjct: 86 AIEKFSKRLVKVTPQHNDDCKELLRLMGVPYIKAPGEAEAQCAALAKAGKVYAVGTEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
A FG +++ K P + + + + AGL L + + +L+G D+ ++ ++G
Sbjct: 146 ALAFGCPVLLRHLTFSEARKLPIQEFNLPSVLAGLELSMDQFVDLCILLGCDY-VDTIRG 204
Query: 222 IGLDTALQFVQNF-SEDEIL-NILHKIGNGDIPQYW 255
IG A+ ++ S +E+L NI H +P+ W
Sbjct: 205 IGPKKAIDLLRKHKSIEEVLKNIDH--SKYPVPEEW 238
>gi|317374927|sp|Q4WWJ1.2|FEN1_ASPFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 112/253 (44%), Gaps = 27/253 (10%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRTARKAEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ GLG+ RK I + +L+G D+ L + +G +TAL+ ++ E ++ I
Sbjct: 208 HLNRALEGLGMDRKQFIDLCILLGCDY-LEPIPKVGPNTALKLIREHGSLE--KVVEAIE 264
Query: 248 NGD-----IPQYW 255
N IP+YW
Sbjct: 265 NDPKKKYVIPEYW 277
>gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana]
gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 453
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 119/251 (47%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q + + HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTFLKCV--------QECVELL 127
G P LK Q LA+ Y DA+ L A E E + + K +C LL
Sbjct: 88 GKPPELKRQ-ELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFE 185
L G+PV++A EAEA CA L G V + D D+ FGA K + + P++++ P
Sbjct: 147 RLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ I L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+
Sbjct: 207 EFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENLN 265
Query: 245 KIGNGDIPQYW 255
K IP+ W
Sbjct: 266 K-ERYQIPEEW 275
>gi|126653087|ref|XP_001388383.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
gi|317374887|sp|A3FPN7.1|FEN1_CRYPI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126117476|gb|EAZ51576.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
Length = 490
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 115/268 (42%), Gaps = 36/268 (13%)
Query: 1 MGVGG--KFWDLLKPYA-RFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSV--------- 48
MG+ G KF P + + +G+ L KRVA+D S WI Q AI++ S
Sbjct: 1 MGIKGLTKFLADNAPKSIQQQGIGSLLGKRVAIDASMWIYQFLAAIREGSQWGNLTNSSG 60
Query: 49 -PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE- 106
H+ RT L + G PVFV DG P +K R R + L A+E
Sbjct: 61 ESTSHINGMLSRTTRLL-EAGIKPVFVFDGAPPEMKKDELTKRDERREKALAELEKAQEI 119
Query: 107 --GILVERNQTFL-----KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
L+++ K V++ +LL GMP + A EAEA CA+L +G V +T
Sbjct: 120 GDEELIKKQSVRTIHVTKKQVEDVKKLLGFLGMPCIDAPSEAEAQCAELCKDGLVYGVVT 179
Query: 160 ADSDAFLFGAKCVVKCIR-------------PNTKEPFECYCISDIEAGLGLKRKHLIAM 206
D+D+ FG +K + K + +S I + L + I +
Sbjct: 180 EDADSLTFGTPIQIKQLNFSESSNKITDKSPSKQKNGMQIIKLSLILSELDINMDQFIDL 239
Query: 207 SLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+L G D+ ++GIG TA + ++ +
Sbjct: 240 CILSGCDY-CGTIRGIGTSTAYKLLKKY 266
>gi|317374932|sp|B0XZ33.2|FEN1_ASPFC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 112/253 (44%), Gaps = 27/253 (10%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRTARKAEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ GLG+ RK I + +L+G D+ L + +G +TAL+ ++ E ++ I
Sbjct: 208 HLNRALEGLGMDRKQFIDLCILLGCDY-LEPIPKVGPNTALKLIREHGSLE--KVVEAIE 264
Query: 248 NGD-----IPQYW 255
N IP+YW
Sbjct: 265 NDPKKKYVIPEYW 277
>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
gi|226700956|sp|B6YWX4.1|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
Length = 341
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 29/241 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L +RVA+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLYGRRVAIDAFNAIYQFLSTIRQRDGTPLMDSQGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKC-------VQE 122
P ++ DG P K + R A E G L E + ++ + +
Sbjct: 75 PAYIFDGKPPDFKKRELEKRREAREEAEEKWYEALERGDLEEAKKYAMRATRVNEGLIND 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
LLEL G+PV++A E EA A + ++ V A + D D+ LFGA +V+ + +
Sbjct: 135 AKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPKLVRNLTITGRR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ L + R+ LI M++L+G D++ G++GIG AL V
Sbjct: 195 KLPGKNVYVEVKPELIVLEEVLKELSIDREKLIEMAILVGTDYNPGGIKGIGPKKALTIV 254
Query: 232 Q 232
+
Sbjct: 255 K 255
>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
Length = 356
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 31/251 (12%)
Query: 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKF 67
E L LR + +A+D + Q AI++ + P HL F+RTIN+ +
Sbjct: 17 IEDLRTLRGRVIAIDGYNALYQFLAAIRQPDGTPLMDGSGRITSHLSGLFYRTINIV-EA 75
Query: 68 GAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
G PV+V DG P LK++ AR Y + A L A ++ T +
Sbjct: 76 GIKPVYVFDGKPPELKAKEIERRRVVREEAARKYEEAVQAGDLESARRYAMMSARLTD-E 134
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V++ LL+ G+P ++A E EA A + +G A + D D+ LFG+ +V+ +
Sbjct: 135 MVRDAKALLDAMGIPWVQAPAEGEAQAAYMARKGDAYASASQDYDSLLFGSPRLVRNLTI 194
Query: 179 NTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
+ + E + + + LG+ ++L+ + +L+G D++ +G +GIG A
Sbjct: 195 SGRRKLPRREEYVEVKPEVIELDKLLSKLGVTYENLVDIGILLGTDYNPDGFEGIGPKKA 254
Query: 228 LQFVQNFSEDE 238
LQ V+ + E
Sbjct: 255 LQLVKVYGSVE 265
>gi|401825763|ref|XP_003886976.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
gi|392998133|gb|AFM97995.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 117/257 (45%), Gaps = 28/257 (10%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNS-------VPKPHLRLTFFRTINLFAKFGAFPV 72
L + KR+A+D S I Q A++ + HL F+RTI + + G PV
Sbjct: 23 LAYYSSKRIAIDASMSIYQFLIAVRSDGSMLGSGDATTSHLVGLFYRTIRM-VELGITPV 81
Query: 73 FVVDGTPSPLK---------SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--Q 121
+V DG P +K +A + YR +A + E + ++ +T + V +
Sbjct: 82 YVFDGAPPEIKMKELGKRNERRAMADKEYREASEAGDKRLME---MYDKRKTKVTGVHVE 138
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR--PN 179
EC LL L G+P A EAEA CA L + V T D D+ FG+ V++ +
Sbjct: 139 ECKRLLGLMGIPFETAPSEAEAYCAFLCRKRIVYGVATEDMDSLTFGSPVVLRNFSGAQS 198
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
K P Y + + L L++ I + +L+G D+ + ++GIG AL ++ E
Sbjct: 199 KKLPVVEYNLRQLLEDLSLEQNEFIDLCILLGCDY-CDTLKGIGPKKALGLIRKHRSIE- 256
Query: 240 LNILHKIGNGDIPQYWG 256
IL + N D+P WG
Sbjct: 257 -RILQE-ENLDVPGGWG 271
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 38/259 (14%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++N + HL F+RT+ + +G P++V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGFFYRTLRMI-DYGIKPMYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER-NQTFLKCV-------QECVELLE 128
GTP LK + RF R ++ VE+ +Q + V +E LL+
Sbjct: 88 GTPPDLKKELLQKRFGRREEAREQQEEQKDVADVEKMDQLARRQVRPTRQHNEEVRHLLK 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
L G+P + A EAEA CA+L G V A + D D FG ++K + + ++ +
Sbjct: 148 LMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQ 207
Query: 189 ISDIEA--GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF----------VQNFSE 236
+ +A GLG+ I + +L+G D+ L+ ++GIG TAL+ V++F E
Sbjct: 208 VDLPKALEGLGMDMAQFIDLCILLGCDY-LDPIKGIGPKTALKLIREHKTLEKVVEHFKE 266
Query: 237 DEILNILHKIGNGDIPQYW 255
+ ++ IP++W
Sbjct: 267 EAKKSV-------QIPEHW 278
>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
gi|166973702|sp|A3CWV2.1|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
Length = 333
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 21/200 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILV 110
HL FRT+N K G PVFV DG P K + R +R+ D + EG +
Sbjct: 58 HLSGILFRTVNFLEK-GIRPVFVFDGKPPEFKQETINERREHRARADEAWKTALREGDME 116
Query: 111 ERNQTFLK-------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + + ELL+L G+P ++A E EA A + +G V ++ D D
Sbjct: 117 EAYKQASASARIDSHTIASSRELLDLLGIPWVQAPSEGEAQAAYMARQGKVTYAVSQDYD 176
Query: 164 AFLFGAKCVVKCI----------RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGND 213
+ LFG+ +V+ + R T P E +S LG+ R+ L+ + +L+G D
Sbjct: 177 SLLFGSPVLVRNLTVSGRRKTRGRTITVNP-ERIVLSSFLDRLGVTREQLVKIGILVGTD 235
Query: 214 HDLNGVQGIGLDTALQFVQN 233
+ G++G+G TAL+ V+N
Sbjct: 236 FN-PGIRGVGGKTALKIVRN 254
>gi|320165003|gb|EFW41902.1| flap endonuclease 1-B [Capsaspora owczarzaki ATCC 30864]
Length = 388
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSMYQFLIAVRSEGNQLMNDAGETTSHLVGFFYRTIRMLEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYR-----STIDASTLPVAEEGILVERNQTFLKCV-----QECVELL 127
P +KS R R +++DA+T A E +E+ Q L V +EC LL
Sbjct: 88 KPPVMKSGELAKRTARREEAQASLDAAT--EAGESETMEKFQRRLVKVTKEHNEECKRLL 145
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFE 185
L G+P + A EAEA CA L G V A T D DA FG+K +++ K P +
Sbjct: 146 TLMGVPYISAPCEAEAQCAALVKSGSVFAAGTEDMDALTFGSKVLLRHLTFSEARKMPIK 205
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
+ + GL L + + + +L+G D+ ++GIG A +Q + I
Sbjct: 206 EFNLDRALEGLKLTMEQFVDLCILLGCDY-CESIKGIGPTRAYALIQEYK-----TIEEI 259
Query: 246 IGNGDIPQY 254
I N D +Y
Sbjct: 260 IKNLDTEKY 268
>gi|357441987|ref|XP_003591271.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480319|gb|AES61522.1| Flap endonuclease 1a [Medicago truncatula]
Length = 369
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 117/250 (46%), Gaps = 23/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 14 RKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLL-EAGMKPVYVFD 72
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P +K+Q R + + L A E E + F K +C LL
Sbjct: 73 GKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLR 132
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFEC 186
L G+PV++A EAEA CA L G V A + D D+ FGA K + + P++K+ P
Sbjct: 133 LMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVME 192
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ I L L I + +L G D+ + ++GIG TAL+ + Q+ S ++IL + K
Sbjct: 193 FDVAKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTALKLIRQHGSIEKILENISK 251
Query: 246 IGNGDIPQYW 255
+P W
Sbjct: 252 -ERYQVPDDW 260
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 32/274 (11%)
Query: 3 VGGKFWDLLKPYARFEGLDF--LRDKRVAVDLSYWIVQHETAIKK---------NSVPKP 51
+G K D+++P E +DF L+ + +++D + Q + I++ N
Sbjct: 1 MGVKLKDIIRP----EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITS 56
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL +R ++ K P++V DGTPS LK + R R T + S +E + +
Sbjct: 57 HLSGILYRNSSMIEK-DIKPIYVFDGTPSYLKQETIDQR--RQTREESE-KKWKEALAKQ 112
Query: 112 RNQTFLK-----------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
Q K ++ +LL + G+P ++A GE EA A L G A +
Sbjct: 113 DTQEARKYAMRSSKLSPYIIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQ 172
Query: 161 DSDAFLFGAKCVVKCIRPNTK-EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
D D LFGAK VV+ + N+ E Y + + L + R+ LI M +LIG D G+
Sbjct: 173 DYDCLLFGAKRVVRNLAINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFS-EGL 231
Query: 220 QGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
+G+G TAL+ + + L L + + DI +
Sbjct: 232 KGVGAKTALKLAKKGELENKLAKLQEESSHDISE 265
>gi|424811751|ref|ZP_18236997.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757159|gb|EGQ40741.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 340
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 35/250 (14%)
Query: 23 LRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAFPVF 73
L D+ +AVD + Q + I+ ++ P HL F+RT L PV+
Sbjct: 19 LNDRVLAVDAMNVLYQFLSIIRQRDGTPLKDSDGNITSHLSGLFYRTTKLLDS-NIRPVY 77
Query: 74 VVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ----------E 122
V DG LK ++A R R + EEG + ++ F K +Q E
Sbjct: 78 VFDGEMPDLKATEAAQRREKREEAQKEWEKLKEEGDV---DEAFSKAMQSSRVTGDMIDE 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
ELL+ G+P + A E EA A++ + G V + D D+ LFGA+ +VK + K
Sbjct: 135 SRELLDAMGVPYVDAPSEGEAQAARMAANGNVYGVGSQDWDSLLFGAERMVKNLTSRKKR 194
Query: 183 ----------PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV- 231
E + + LGL R+ L+ M +L+G D + +G+ G+G TAL+ V
Sbjct: 195 SNRDGSSRTISTELIRLEHVLDNLGLSRRELVWMGMLVGTDFNPDGIYGVGPKTALKLVR 254
Query: 232 QNFSEDEILN 241
+N S +E+L+
Sbjct: 255 RNQSLEEVLS 264
>gi|350417449|ref|XP_003491427.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Bombus
impatiens]
Length = 1107
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P + A EAEA CA L +D IT DSD +LFG +CV K N K
Sbjct: 741 EAQELLRLFGIPYIIAPMEAEAQCAYLEQIHLIDGTITDDSDIWLFGGQCVYKNFFDNNK 800
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E + DI+ L R +I ++LL+G+D+ G+ GIG TAL+ + F
Sbjct: 801 KVLE-FRSCDIQHYFKLTRNEMIRLALLVGSDY-TTGLTGIGPVTALEILAAF 851
>gi|317376191|sp|B9EMY6.1|FEN1_SALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|221220444|gb|ACM08883.1| Flap endonuclease 1-B [Salmo salar]
gi|221221934|gb|ACM09628.1| Flap endonuclease 1-B [Salmo salar]
Length = 380
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A+++ N HL F+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMCMYQFLVAVRQDGNVLQNENGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF----LKCVQ----ECVELLEL 129
P LKS R R L A+E E F +K Q EC +LL L
Sbjct: 88 KPPQLKSGELEKRGERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTQQHNDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
+ + + L + I + +L+G D+ ++GIG A+ + Q+ S +EIL
Sbjct: 208 QFTRLLQDINLTHEQFIDLCILLGCDY-CGTIKGIGPKRAIDLIRQHGSIEEIL 260
>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
gi|74699231|sp|Q4P1V1.1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
Length = 374
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 38/259 (14%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++N + HL F+RT+ + +G P++V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGFFYRTLRMI-DYGIKPMYVFD 87
Query: 77 GTPSPLKSQARLARF------------YRSTIDASTL-PVAEEGILVERNQTFLKCVQEC 123
GTP LK + RF + DA + +A + R +E
Sbjct: 88 GTPPDLKKELLQKRFGRREEAREQEEEQKDVADAEKMDQLARRQVRPTRQHN-----EEV 142
Query: 124 VELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP 183
LL+L G+P + A EAEA CA+L G V A + D D FG ++K + + ++
Sbjct: 143 RHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKK 202
Query: 184 FECYCISDIEA--GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
+ + +A GL + I + +L+G D+ L+ ++GIG TAL+ ++ E N
Sbjct: 203 LPVHQVDLAKALEGLQMTMAQFIDLCILLGCDY-LDPIKGIGPKTALKLIREHKTLE--N 259
Query: 242 ILHKIGNG-----DIPQYW 255
++H + IP +W
Sbjct: 260 VVHHLKEDGKKSVQIPDHW 278
>gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula]
Length = 384
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 117/250 (46%), Gaps = 23/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLL-EAGMKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P +K+Q R + + L A E E + F K +C LL
Sbjct: 88 GKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFEC 186
L G+PV++A EAEA CA L G V A + D D+ FGA K + + P++K+ P
Sbjct: 148 LMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVME 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ I L L I + +L G D+ + ++GIG TAL+ + Q+ S ++IL + K
Sbjct: 208 FDVAKILEELDLTMDQFIDLCILSGCDY-CDNIRGIGGMTALKLIRQHGSIEKILENISK 266
Query: 246 IGNGDIPQYW 255
+P W
Sbjct: 267 -ERYQVPDDW 275
>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
Length = 413
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 16/226 (7%)
Query: 21 DFLRDKRVAVDLSYWIV---QHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
D++RD + ++S+ I + + ++ HL F+RT+ + G P++V DG
Sbjct: 48 DYIRDT-LESNISFLIAVRSDGQQLMNESGETTSHLMGLFYRTLRMVDN-GIKPLYVFDG 105
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A A+E E + F + +EC +LL+L
Sbjct: 106 APPKLKSGELAKRIARKQEAAEQHEEAKETGTTEDVEKFSRRTVRVTREHNEECKKLLKL 165
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 166 MGIPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEI 225
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GLG+ RK + + +L+G D+ L+ + +G +TAL+ +++
Sbjct: 226 HLDRVLEGLGMDRKTFVDLCILLGCDY-LDPIPKVGPNTALKLIRD 270
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VAVD S I Q + + HL+ FFRT + + G PV+V D
Sbjct: 29 RKVAVDASMHIYQFMVVVGRQGDQLLTNEAGDITSHLQGMFFRTARML-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LK R R L A+E E + + K ++C LL
Sbjct: 88 GKPPQLKQDQLAMRSERRADANEALEKAKEAGDAEAVEKYSKRSVRVTKEHNEDCKRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
L G+PV++A EAEA CA++ G V T D DA FGA V++ + +
Sbjct: 148 LMGVPVVEAPSEAEAQCAEMAKAGLVYGLATEDMDALTFGAPRVIRHLMAPSSSNVPVQE 207
Query: 189 ISDIEA--GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
I A LGL I M +L+G D+ ++GIG ALQ ++ I IL ++
Sbjct: 208 IDRAVALQELGLDDDQFIDMCILMGCDY-CGTIRGIGAVRALQLIKKHG--SIEAILEEL 264
Query: 247 GNGDIP 252
P
Sbjct: 265 DKAKFP 270
>gi|384493818|gb|EIE84309.1| hypothetical protein RO3G_09019 [Rhizopus delemar RA 99-880]
Length = 816
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ + + ELL+LFG+P + + EAEA CA L ++ IT DSD FLFGA V K +
Sbjct: 656 QMIGDIQELLKLFGIPYIVSPMEAEAQCAALERLKLIEGTITDDSDVFLFGASRVYKNMF 715
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + ECY DIE + L R LI ++ L+G+D+ G+ G+G A++ + F
Sbjct: 716 -NQQRFVECYRTEDIEREMMLSRNKLIQLAYLLGSDY-TEGIPGVGPVAAMEILDEF 770
>gi|340966641|gb|EGS22148.1| hypothetical protein CTHT_0016650 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 395
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNDAGETTSHLMGMFYRTLRM-VDAGIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 KPPKLKSGELAKRFQRKQEAQEDLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFAEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ GL + RK + + +L+G D+ L+ + IG TAL+ ++
Sbjct: 208 HTDKVLEGLNMDRKQFVDLCILLGCDY-LDPIPKIGPSTALKLIRE 252
>gi|398396234|ref|XP_003851575.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
gi|339471455|gb|EGP86551.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
Length = 393
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 21/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + A++ HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMSLYSFLVAVRSGGEQLMSDTGETTSHLMGMFYRTLRIVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + + A+E E + F + E LL+L
Sbjct: 88 APPKLKSGELAKRFQRKSEAQESHEEAKETGTAEDVEKFSRRTVRVTREHNAEAQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +V+ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARGGKVFAAASEDMDTLTFASPVLVRKLTFAEQRKEPVQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNILHKI 246
+ + GL + + I +L+G D+ L+ V+GIG +AL ++ E ++ + K
Sbjct: 208 HLDRVLEGLEMDQTQFIDFCILLGCDY-LDPVKGIGPKSALALIKEHKTLENVVVYIEKS 266
Query: 247 GNGDIPQYW 255
G +P+ W
Sbjct: 267 GKYTLPEDW 275
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 32/274 (11%)
Query: 3 VGGKFWDLLKPYARFEGLDF--LRDKRVAVDLSYWIVQHETAIKK---------NSVPKP 51
+G K D+++P E +DF L+ + +++D + Q + I++ N
Sbjct: 1 MGVKLKDIIQP----EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITS 56
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL +R ++ K P++V DGTPS LK + R R T + S +E + +
Sbjct: 57 HLSGILYRNSSMIEK-DIKPIYVFDGTPSYLKQETIDQR--RQTREESE-KKWKEALAKQ 112
Query: 112 RNQTFLK-----------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
Q K ++ +LL + G+P ++A GE EA A L G A +
Sbjct: 113 DTQEARKYAMRSSKLSPYIIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQ 172
Query: 161 DSDAFLFGAKCVVKCIRPNTK-EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
D D LFGAK VV+ + N+ E Y + + L + R+ LI M +LIG D G+
Sbjct: 173 DYDCLLFGAKRVVRNLAINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFS-EGL 231
Query: 220 QGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
+G+G TAL+ + + L L + + DI +
Sbjct: 232 KGVGAKTALKLAKKGELENKLAKLQEESSHDISE 265
>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
Length = 395
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPFIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL ++R + + +L+G D+ L+ V +G TAL+ ++
Sbjct: 208 HLDKVLEGLNMERSQFVDLCILLGCDY-LDPVPKVGPTTALKLIRE 252
>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 304
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 27/223 (12%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTI------DASTLPVAE 105
HL F+RTI++ + G P++V DG P K+Q R A T +
Sbjct: 10 HLNGLFYRTISILEE-GIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIK 68
Query: 106 EGILVERNQTFLKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
L + Q ++ E E LL+ G+PV++A E EA A +N G A + D
Sbjct: 69 TSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQD 128
Query: 162 SDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLI 210
D+ LFGAK +++ + + K E + + LGL R+ LI + +++
Sbjct: 129 YDSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIV 188
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
G D++ +G++G G+ TA + ++ + E I G+IP+
Sbjct: 189 GTDYNPDGIKGYGVKTAYRIIKKYGSLE-----KAIEKGEIPK 226
>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 332
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 112/257 (43%), Gaps = 39/257 (15%)
Query: 17 FEG----LDFLRDKRVAVDLSYWIVQHETAIK----------KNSVPKPHLRLTFFRTIN 62
FEG + L K +A+D WI Q T I+ K V HL F+R I+
Sbjct: 9 FEGRSIKMQELSGKTIAIDAFNWIFQFLTTIRLADGSYLTDSKGRVT-THLNGIFYRCIS 67
Query: 63 LFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK---- 118
+ G PVFV DG K + R +I AE + E +++
Sbjct: 68 MLEN-GINPVFVFDGKAPRFKKETLKER---ESIKEEARIKAENAVTQEERAMYMRRLSR 123
Query: 119 ----CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
V ELL+ G+ ++A E EA A ++ +G V A + D D LFGAK V++
Sbjct: 124 IDDYIVASSKELLDYMGVKYVQAPAEGEAQAAWMSGKGLVYAAASQDYDTILFGAKRVIR 183
Query: 175 CIRPNTKEPFECYCIS------DIEAG-----LGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
+ N K I+ IE+ LG+ R+ +I ++L G D++ GV GIG
Sbjct: 184 NLNINNKRKISRKGITVQVNPEIIESDYNLKKLGVDREKMIVVALFTGTDYN-KGVDGIG 242
Query: 224 LDTALQFVQNFSEDEIL 240
AL V+ S +++L
Sbjct: 243 PRKALNLVKENSVEKLL 259
>gi|344258300|gb|EGW14404.1| Flap endonuclease 1 [Cricetulus griseus]
Length = 412
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 54/281 (19%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV----------------- 120
P LKS R R L A+E + E + F K +
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGVEEEVEKFTKLLLKSERRAEAEKQLQQAQ 147
Query: 121 -----------------------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDAC 157
EC LL L G+P L A EAEA CA L G V A
Sbjct: 148 EAGVEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAA 207
Query: 158 ITADSDAFLFGAKCVVKCIRPN--TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHD 215
T D D FG+ +++ + + K P + + +S + LGL ++ + + +L+G+D+
Sbjct: 208 ATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDY- 266
Query: 216 LNGVQGIGLDTALQFVQNF-SEDEILNILHKIGNGDIPQYW 255
++GIG A+ +Q S +EI+ L +P+ W
Sbjct: 267 CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP-NKYPVPENW 306
>gi|71000637|ref|XP_755000.1| Flap endonuclease Rad27 [Aspergillus fumigatus Af293]
gi|66852637|gb|EAL92962.1| Flap endonuclease Rad27, putative [Aspergillus fumigatus Af293]
Length = 394
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS R R A+E E
Sbjct: 62 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGTAE 120
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 121 DVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 180
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + ++ GLG+ RK I + +L+G D+ L +
Sbjct: 181 TLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDY-LEPIPK 239
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGD-----IPQYW 255
+G +TAL+ ++ E ++ I N IP+YW
Sbjct: 240 VGPNTALKLIREHGSLE--KVVEAIENDPKKKYVIPEYW 276
>gi|395646325|ref|ZP_10434185.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
gi|395443065|gb|EJG07822.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
Length = 333
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 107/234 (45%), Gaps = 32/234 (13%)
Query: 28 VAVDLSYWIVQHETAIK---------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGT 78
+AVD + Q T I+ K+ HL FFR +N K G P ++ DG
Sbjct: 25 IAVDAFNALYQFLTIIRQPDGTPLMDKDGRVTSHLSGIFFRNLNFLEK-GIRPAYIFDGA 83
Query: 79 PSPLKSQ--ARLARFYRSTIDASTLPVAEEGILVE-----RNQTFL--KCVQECVELLEL 129
P LK++ AR R R E G + E R T + + LL+L
Sbjct: 84 PPDLKTETVAR-RRGVREAAGERWKEAVERGDIEEAYKQARASTRIDDAMIASSKRLLDL 142
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI----------RPN 179
G+P + A E EA A + +G V A + D DA LFGA +V+ + R
Sbjct: 143 MGIPWMVAPSEGEAQAAFMARQGDVGAAASQDYDALLFGAPRLVRNLTVSGKRKVRGRSV 202
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
T P E ++ + AGLGL R+ L+ + +LIG D + G++G+G TAL+ V+
Sbjct: 203 TVRP-ERIDLAAVLAGLGLSREELVEIGILIGTDFN-PGIRGVGAKTALKIVRG 254
>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1431
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL +FG+P +++ EAEA C+ LN + Y DA I+ DSD +F K V+K N K+ E
Sbjct: 1110 LLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFF-NKKKTVE 1168
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y IE LGL + LI +SLL G D+ + GV G+G+ AL+ ++ F E L L +
Sbjct: 1169 VYERKLIEDKLGLYQDELINLSLLCGCDYTI-GVHGVGIVNALEIIKAFPTFEDLKKLKE 1227
Query: 246 I 246
I
Sbjct: 1228 I 1228
>gi|358385848|gb|EHK23444.1| hypothetical protein TRIVIDRAFT_37094 [Trichoderma virens Gv29-8]
Length = 395
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL ++R + + +L+G D+ L+ V +G TAL+ ++
Sbjct: 208 RLDKVLEGLNMERDQFVDLCILLGCDY-LDPVPKVGPTTALKLIRE 252
>gi|328852744|gb|EGG01887.1| hypothetical protein MELLADRAFT_110505 [Melampsora larici-populina
98AG31]
Length = 385
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 22/250 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S I Q A+++ + HL F+RTI + A+ G P +V D
Sbjct: 29 RKVAIDASMSIYQFLIAVRQQDGQQLMNEAGETTSHLMGFFYRTIRM-AENGIKPAYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEE-GILVERNQTFLKCV-------QECVELLE 128
G P LKS RF + T A A+E G + ++ + V +EC LL
Sbjct: 88 GKPPQLKSGVLAKRFEKRTEAAEEGEEAKEVGTTEDLDKLTRRTVKVTREHNEECRRLLT 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+P + A EAEA CA+L G V + D D FG +++ K P
Sbjct: 148 LMGIPWVIAPSEAEAQCAELCKGGLVYGAGSEDMDTLTFGTPLLLRHLTFSEARKVPINT 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+S + AGL L + I +L G D+ ++ ++G+ TAL+ + ++ S + +++ L +
Sbjct: 208 VNLSKVLAGLDLTMERFIDFCILCGCDY-VDPLKGVAAKTALKLIKEHGSLEAVVDHLQQ 266
Query: 246 IGNGDIPQYW 255
G P+ W
Sbjct: 267 TGKNPPPEDW 276
>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1031
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDKLFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
Length = 304
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 27/223 (12%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTI------DASTLPVAE 105
HL F+RTI++ + G P++V DG P K+Q R A T +
Sbjct: 10 HLNGLFYRTISILEE-GIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIK 68
Query: 106 EGILVERNQTFLKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
L + Q ++ E E LL+ G+PV++A E EA A +N G A + D
Sbjct: 69 TSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQD 128
Query: 162 SDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLI 210
D+ LFGAK +++ + K E + + LGL R+ LI + +++
Sbjct: 129 YDSLLFGAKRLIRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIV 188
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
G D++ +G++G G+ TA + ++ + E I G+IP+
Sbjct: 189 GTDYNPDGIKGYGVKTAYRIIKKYGSLE-----KAIEKGEIPK 226
>gi|49619155|gb|AAT68162.1| flap structure specific endonuclease 1 [Danio rerio]
Length = 380
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLES-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + +EC +LL L
Sbjct: 88 KPPQLKSGELEKRVERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKAGKVYATATEDMAGLTFGTTVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
S I + L + I + +L+G D+ ++GIG A+ + Q+ S +EIL
Sbjct: 208 HFSRILQDMELTHQQFIDLCILLGCDY-CGTIKGIGPKRAIDLIKQHGSIEEIL 260
>gi|410909029|ref|XP_003967993.1| PREDICTED: flap endonuclease 1-like [Takifugu rubripes]
Length = 380
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMCMYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R + L A+E E + F K + EC +LL L
Sbjct: 88 KPPQLKSSELEKRGEKRAEAEKLLAQAQETGEQENIEKFSKRLVKVTKQHSDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
S + GL + I + +L+G D+ ++GIG A+ + Q+ S +EIL
Sbjct: 208 HFSRVLQETGLTNEQFIDLCILLGCDY-CGTIKGIGPKRAIDLIKQHGSIEEIL 260
>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
Length = 1031
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|194377686|dbj|BAG63206.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 14/215 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RTI + G PV+V DG P LKS R R L A+ +
Sbjct: 27 HLMGMFYRTIRMMEN-GIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQ 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F K + EC LL L G+P L A EAEA CA L G V A T D D
Sbjct: 86 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMD 145
Query: 164 AFLFGAKCVVKCIRPN--TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
FG+ +++ + + K P + + +S I LGL ++ + + +L+G+D+ ++G
Sbjct: 146 CLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDY-CESIRG 204
Query: 222 IGLDTALQFVQNF-SEDEILNILHKIGNGDIPQYW 255
IG A+ +Q S +EI+ L +P+ W
Sbjct: 205 IGPKRAVDLIQKHKSIEEIVRRLDP-NKYPVPENW 238
>gi|365765505|gb|EHN07013.1| Rad2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1031
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
Length = 1031
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|159128014|gb|EDP53129.1| Flap endonuclease, putative [Aspergillus fumigatus A1163]
Length = 394
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS R R A+E E
Sbjct: 62 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGTAE 120
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 121 DVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 180
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + ++ GLG+ RK I + +L+G D+ L +
Sbjct: 181 TLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDY-LEPIPK 239
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGD-----IPQYW 255
+G +TAL+ ++ E ++ I N IP+YW
Sbjct: 240 VGPNTALKLIREHGSLE--KVVEAIENDPKKKYVIPEYW 276
>gi|168014475|ref|XP_001759777.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374864|sp|A9S0B8.1|FEN11_PHYPA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|162688907|gb|EDQ75281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q + ++ HL+ F RTI + + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGSELLTNDAGEVTSHLQGMFNRTIRVL-EAGLKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEE-GILVERNQTFLKCV-------QECVELLE 128
G P LK + RF R A L A+E G + + K V ++C +LL
Sbjct: 88 GQPPDLKKRELAKRFARREDAAEDLVTAKETGNEADVEKYSKKTVKVTKQHNEDCRKLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFEC 186
L G+PV++A EAEA CA L V A + D D+ +G+ ++ + P +++ P
Sbjct: 148 LMGVPVVEAPSEAEAECASLCKAEKVFAVASEDMDSLTYGSTRFLRHLMEPTSRKLPVLE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ I+ + GLGL + + +L G D+ + ++GIG TAL+ ++ EI+
Sbjct: 208 FDIAKVLEGLGLNMDQFVDLCILCGCDY-CDTIRGIGPQTALKMIRQHGSLEIV 260
>gi|225560221|gb|EEH08503.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 827
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D+S W+ Q + + P LR F+R + L P+F+ DG P
Sbjct: 31 RPIRVAIDISIWLFQVQAGKGGTN---PELRTLFYRLVRLTG-LPVHPLFIYDGPQRP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQ---TFLKCVQECVELLELFGMPVLKAKGE 140
++ R G L++RN + ++ L++LF P A GE
Sbjct: 85 ------QYKR-------------GKLIDRNNRAGDLGRIIRRSKHLIDLFRFPHHTAPGE 125
Query: 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAGL 196
AEA CA+L + G VDA ++ D DA +FG+K + K T E+G
Sbjct: 126 AEAECARLQTSGVVDAVMSDDVDAIMFGSKVTIMNFSKESSSGTNAATHVTLYQTEESGD 185
Query: 197 GLKRKHL------IAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
G KR L I +LL G D+ GV G A + +Q +E+L +
Sbjct: 186 GRKRNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAGEIIQAGFGNELLQAI 238
>gi|195397917|ref|XP_002057574.1| GJ18024 [Drosophila virilis]
gi|194141228|gb|EDW57647.1| GJ18024 [Drosophila virilis]
Length = 1238
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ G + IT DSD +LFG + V K K
Sbjct: 877 DCQELLRLFGIPYIVAPMEAEAQCAFLNAVGITNGTITDDSDIWLFGGRTVYKNFFAQNK 936
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 937 HVLE-FRAEQIEQTFNCSRDKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 988
>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
Length = 998
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDKLFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|349578461|dbj|GAA23627.1| K7_Rad2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1031
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|299751761|ref|XP_001830466.2| hypothetical protein CC1G_07381 [Coprinopsis cinerea okayama7#130]
gi|298409522|gb|EAU91346.2| hypothetical protein CC1G_07381 [Coprinopsis cinerea okayama7#130]
Length = 783
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RV +D S W +H T K LR FF+ I L K P+ V DG P
Sbjct: 15 RAYRVGIDASIWF-KHSTFSKGGE--NHELRTLFFKIIYLL-KMPILPLIVFDGRHRP-- 68
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ R +R +S + P E LL+ FG+ +A GEAEA
Sbjct: 69 KEKRGSRMGKSGSHNLSRPFKE--------------------LLDAFGVEWREAPGEAEA 108
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKC----IRPNTKEP------------FECY 187
LN+ G +DA ++ D D+F+FGAK V+K + N P Y
Sbjct: 109 ELGHLNNLGIIDAIMSDDCDSFIFGAKVVIKNKSKELSGNASNPAVNAAGKVDKHHTMVY 168
Query: 188 CISDIE--AGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
I DI+ +GLKR L+ +LL G D+D GV+ IG AL +
Sbjct: 169 RIEDIQNDPDIGLKRGGLVLFALLCGGDYDQKGVRNIGKVAALALAR 215
>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
gi|131811|sp|P07276.2|RAD2_YEAST RecName: Full=DNA repair protein RAD2
gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
gi|392299514|gb|EIW10608.1| Rad2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1031
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|406865692|gb|EKD18733.1| DNA-repair protein rad2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 460
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 14/216 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R L A+E E
Sbjct: 129 HLMGMFYRTLRIVDN-GIKPIYVFDGAPPKLKSGELAKRFQRKATATEGLEEAKETGTAE 187
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC LL+ G+P + A EAEA CA L V A + D D
Sbjct: 188 DVEKFSRRTVRVTREHNAECQRLLKCMGIPYIIAPTEAEAQCAVLARADKVYAAASEDMD 247
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + + + GLG+ R + + +L+G D+ L+ +
Sbjct: 248 TLCFDAPVLLRHLTFSEQRKEPIQEIFLPKVLEGLGMDRAQFVDLCILLGCDY-LDPIPK 306
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNG--DIPQYW 255
+G + AL+ ++ + E + G IP+ W
Sbjct: 307 VGPNAALKIIREYGTIEKFVAAVEAGKAKYSIPEDW 342
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S + Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAVDASMCLYQFLIAVRQDGSQLQTESGETTSHLLGMFYRTIRMIDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDA----STLPVAEEGILVERNQTFLKCVQECVE----LLEL 129
P +K+ R R T + + +E + + + +K +E E L+ L
Sbjct: 88 KPPQMKTSELEKRTERRTEAEKQRNDAVELGDETSVNKFEKRLVKVTKEQSEEAKRLVTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+PVL A EAEA CA L G V A ++ D DA FG+ +++ + + K P +
Sbjct: 148 MGIPVLDAPCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEAKKLPVKEM 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ + G+ + + +L+G D+ ++ ++GIG A + ++ + + I N+L I
Sbjct: 208 NLNQVLKDFGMNMGQFVDLCILLGCDY-VSTIRGIGPKKAFELIKKY--ECIENVLETIN 264
Query: 248 NGD--IPQYW 255
IPQ W
Sbjct: 265 QTKYPIPQDW 274
>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 1031
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
FG+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|407922590|gb|EKG15687.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 691
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 34/218 (15%)
Query: 16 RFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVV 75
+FE D R R+A+D S W+ Q +++ + P LR ++R + L + P+FV
Sbjct: 25 KFE--DTGRPLRIAIDTSIWLFQIQSSKGGTN---PALRTFYYRLLRLIS-LSIHPLFVF 78
Query: 76 DGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVL 135
DG P R R+ + +++P FL +LL+ FG P
Sbjct: 79 DGPNKP-----PFKRNKRTGPNVASIP------------EFL-----AKQLLKQFGFPFH 116
Query: 136 KAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAG 195
A GEAEA CA L EG VD ++ D D +FG++ ++ P K ++ +AG
Sbjct: 117 IAPGEAEAECALLQREGIVDVVLSEDVDTLMFGSRITLRNWSPEQKSSKVPTHVNVYDAG 176
Query: 196 ------LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
GL R+ +I ++L+ G D+ G+ G G TA
Sbjct: 177 KTKSGPSGLDREGMILVALMSGGDYLPEGIPGCGPKTA 214
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 23/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LK Q R+ + L A E E + F K +C LL
Sbjct: 88 GKPPDLKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFEC 186
L G+PV++A EAEA CA L G V ++ D D+ FGA K + + P++K+ P
Sbjct: 148 LMGVPVVEAPSEAEAQCAALCKAGKVYGVVSEDMDSLTFGAPKFLRHLMDPSSKKIPVME 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ I L + I + +L G D+ + ++GIG TAL+ + Q+ S + I L+K
Sbjct: 208 FEVAKILEELNMTMDQFIDLCILSGCDY-CDSIRGIGGLTALKLIRQHGSIENIPENLNK 266
Query: 246 IGNGDIPQYW 255
IP W
Sbjct: 267 -ERYQIPDNW 275
>gi|340518918|gb|EGR49158.1| Rad27p/FEN-1 endonuclease-like protein [Trichoderma reesei QM6a]
Length = 395
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL ++R+ + + +L+G D+ L+ + +G TAL+ ++
Sbjct: 208 RLDKVLEGLNMEREQFVDLCILLGCDY-LDPIPKVGPTTALKLIRE 252
>gi|330689555|pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
gi|330689556|pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 112/249 (44%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 28 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 86
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 87 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 146
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D FG+ +++ + + K P + +
Sbjct: 147 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMACLTFGSPVLMRHLTASEAKKLPIQEF 206
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 264
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 265 NKYPVPENW 273
>gi|393247337|gb|EJD54845.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 585
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 109/268 (40%), Gaps = 58/268 (21%)
Query: 1 MGVGGKFWDLLKPYARFEG------------LDFLRDKRVAVDLSYWIVQHETAIKKNSV 48
MGV W +L+P A + LD R R+ +D S W E + +
Sbjct: 1 MGVK-DLWKVLRPAASTQSVTRLAVDGFNTNLDGNRGYRIGIDASIWFGHTEKLKNRQRL 59
Query: 49 PKPH-LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
K H LR FFR +L + PVFV DG PL + +++ F S
Sbjct: 60 GKNHALRTLFFRCTHLL-EVPILPVFVFDGQDRPLVKRGKVSHFKES------------- 105
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
K V EL++ FG A GEAEA A LN G +DA T D+D LF
Sbjct: 106 ----------KLVAGMKELIDAFGFQWHLAPGEAEAELAYLNQIGVIDAVWTDDADTLLF 155
Query: 168 GAKCVVK----CIRPNTKEPF-------ECYCISDIEAG-------LGLKRKHLIAMSLL 209
GA V++ + N + P + + + AG + L R LI ++LL
Sbjct: 156 GATTVIRNPSSTLSGNVENPLLNAESRADGKHVLVVNAGDLASHDEVQLTRGGLILIALL 215
Query: 210 IGNDHDLNGVQGIGLDTALQFVQ-NFSE 236
G D+ GV IG+ AL + F E
Sbjct: 216 RGGDYG-KGVSQIGIQIALGLARCGFGE 242
>gi|340376739|ref|XP_003386889.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Amphimedon queenslandica]
Length = 739
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 16/152 (10%)
Query: 97 DASTLPVAEEGIL----VER---NQTFL-------KCVQECVELLELFGMPVLKAKGEAE 142
DAS +++ +L VE+ NQT L ++ ELL LFG+P L++ EAE
Sbjct: 413 DASQTDISDSNVLQHLPVEKLANNQTILINESSSESEIEFEEELLRLFGLPYLESPSEAE 472
Query: 143 ALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKH 202
A C+ L S IT D+D FLFG V + + + + E Y +DIE LGL R +
Sbjct: 473 AQCSTLESLSLTQGTITDDNDVFLFGGMNVYRHMFTGSHD-VEYYRNADIETLLGLDRNN 531
Query: 203 LIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
LI ++ L+G D+ +G++G+G+ AL+ VQ F
Sbjct: 532 LIILAYLLGCDY-TDGIEGVGVVNALELVQFF 562
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK------KNSVPKPHLR 54
MGV W +L+P R + L+ + +AVD+S W+ Q AIK N +PKPHL
Sbjct: 1 MGVK-DLWKILEPSGRAINPETLKGQILAVDVSIWLNQ---AIKGARDHHGNEIPKPHLL 56
Query: 55 LTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
+ F R L + PVFV DG P PLK++
Sbjct: 57 VLFNRICKLLF-YQIRPVFVFDGPPPPLKTKT 87
>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1473
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL +FG+P +++ EAEA C+ LN + Y DA I+ DSD +F K V+K N K+ E
Sbjct: 1141 LLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFF-NRKKTVE 1199
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y IE LGL + LI +SLL G D+ + GV G+G+ AL+ ++ F E L L +
Sbjct: 1200 VYERKLIEDKLGLYQDELINLSLLCGCDYTI-GVHGVGIVNALEIIKAFPTFEDLKKLKE 1258
Query: 246 I 246
I
Sbjct: 1259 I 1259
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 24/252 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++N + HL F+RT+ + +G P++V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGFFYRTLRMI-DYGIKPMYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER-NQTFLKCV-------QECVELLE 128
GTP LK + RF R ++ VE+ +Q + V +E LL+
Sbjct: 88 GTPPDLKKELLQKRFGRREEAREQEEEQKDVADVEKMDQLARRQVRPTRQHNEEVRHLLK 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
L G+P + A EAEA CA+L G V A + D D FG ++K + + ++ +
Sbjct: 148 LMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQ 207
Query: 189 ISDIEA--GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNILHK 245
+ +A GL + I + +L+G D+ L+ ++GIG TAL+ ++ E ++ L +
Sbjct: 208 VDLPKALEGLQMSMPQFIDLCILLGCDY-LDPIKGIGPKTALKLIREHKTLENVVEHLKE 266
Query: 246 IGNG--DIPQYW 255
G IP++W
Sbjct: 267 EGKKSVQIPEHW 278
>gi|390371157|dbj|GAB65038.1| DNA repair endonuclease [Plasmodium cynomolgi strain B]
Length = 1505
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL +FG+P +++ EAEA C+ LN + Y DA I+ DSD +F K V+K N K+ E
Sbjct: 1175 LLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFF-NRKKTVE 1233
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
Y IE LGL + LI +SLL G D+ + GV G+G+ AL+ ++ F + L L +
Sbjct: 1234 VYERKHIEDKLGLYQDELINLSLLCGCDYTI-GVHGVGIVNALEIIKAFPTFDDLKKLKE 1292
Query: 246 IGNGDIPQYWGDIKSTEEAVSHSDESMPMIKS 277
I + D K H++E +KS
Sbjct: 1293 IVSNPFRDLSKDDKYFHNEEVHNEEVKNFLKS 1324
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 22/245 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ P HL TF+RTI L + G PV+V DG
Sbjct: 29 RKVAIDASMSLYQFLIAVRSEGAQLTTADGEPTSHLVGTFYRTIRLL-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA-EEGILVER---NQTFLKCVQ----ECVELLEL 129
P +K R + L A E G E N+ +K + E ELL L
Sbjct: 88 KPPEMKGGELNKRMEKRAEAQKALDKAMEAGDQAEVDKFNRRLVKVTRHHADEAKELLRL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P ++A EAEA CA + G + A T D DA FG+ V++ K P +
Sbjct: 148 MGVPYIEAPCEAEAQCAAMVKAGKIYATATEDMDALTFGSDIVLRHLTFSEARKMPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ + L L + I +L+G D+ + ++GIG +++ ++N I IL I
Sbjct: 208 HLKIVLQELNLSQTEFIDFCILMGCDY-TDSIRGIGPKKSIELIKNHR--SIEKILENID 264
Query: 248 NGDIP 252
P
Sbjct: 265 KSKYP 269
>gi|387595247|gb|EIJ92872.1| flap endonuclease 1-B [Nematocida parisii ERTm1]
Length = 342
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 110/248 (44%), Gaps = 24/248 (9%)
Query: 6 KFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIK--------KNSVPKPHL 53
K +LLK A R ++ R +VA+D S + Q AI+ KN H+
Sbjct: 5 KLTELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAIRYGMDNLKNKNGETTAHI 64
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL--PVAEEGILVE 111
F++TINL K G PV++ DG P LK R R L V EE +
Sbjct: 65 YGIFYKTINLLEK-GIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLVEAVTEEEKVKH 123
Query: 112 RNQTFLKC---VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
+T V+ LL++ G+P + A EAE CA LN G V+ ++ D D+ FG
Sbjct: 124 AKRTVRATKYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSEDMDSLAFG 183
Query: 169 AKCVVKCIRPN-TKEPFECYCISDIEAGL---GLKRKHLIAMSLLIGNDHDLNGVQGIGL 224
K +++ P K+ IS +E L GL + I M +L+G D+ ++G+G
Sbjct: 184 GKILLRNFFPALMKKKLSVMEIS-LEMVLKQTGLDQSEFIDMCILLGCDY-CQKLKGMGP 241
Query: 225 DTALQFVQ 232
VQ
Sbjct: 242 KKVYDLVQ 249
>gi|198417766|ref|XP_002129714.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 380
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP--------KPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q AI+++ H+ F+RTI L G PVFV DG
Sbjct: 29 RKVAIDASMAVYQFLIAIRQDGNQLTNEDGEVTSHIAGLFYRTIRLLGN-GIKPVFVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEE---GILVER-NQTFLKCVQE----CVELLEL 129
P +KS R R L A+E VE+ ++ +K +E C +LL L
Sbjct: 88 KPPQMKSGELAKRAERREQAEKELAKAQESGEAADVEKYSRRLVKVTREHMDDCKKLLRL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+PV++A EAEA CA L G V A T D DA F + +++ K P + +
Sbjct: 148 MGIPVVEAPTEAEAQCASLVKSGKVYATATEDMDALTFHSSRLLRHLTFSEARKMPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+ + + + + + +L+G D+ ++G+G A ++ + S DEIL + +
Sbjct: 208 VYEKVLEEMEMTHEQFVDLCILLGCDY-CEHIRGVGPKRAYDLIKQYRSIDEILKNID-L 265
Query: 247 GNGDIPQYW 255
+P W
Sbjct: 266 KKYTVPDGW 274
>gi|212526840|ref|XP_002143577.1| Rad2-like endonuclease, putative [Talaromyces marneffei ATCC 18224]
gi|210072975|gb|EEA27062.1| Rad2-like endonuclease, putative [Talaromyces marneffei ATCC 18224]
Length = 863
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPL- 82
R R+AVD+S W+ Q + + P LR FFR + L A P+FV DG P
Sbjct: 31 RPIRIAVDISIWLFQLQAGRGGQN---PELRTLFFRLVRLLA-LPIHPLFVYDGKQKPPF 86
Query: 83 -KSQARLARFYRST--IDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKG 139
+ +A R Y S I+ S + L++LF P A G
Sbjct: 87 KRGKATTGRSYGSAPIINLSKI------------------------LIDLFKFPRHDAPG 122
Query: 140 EAEALCAQLNSEGYVDACITADSDAFLFGAKCVV------KCIRPNTKEPFECYCIS--- 190
EAEA CA+L G VDA ++ D D +FG+ V + +CY
Sbjct: 123 EAEAECARLQQAGVVDAVMSNDVDTLMFGSGLTVMNFSKEGSTGTSAATHIDCYTTKTQL 182
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ-NFSED 237
D+EA + L R ++ ++L G D+ +GV G A + + F ED
Sbjct: 183 DVEANVKLTRAGMVLFAMLSGGDYLPSGVTKCGPGLAGEIAKAGFGED 230
>gi|298711922|emb|CBJ48609.1| DNA repair enzyme [Ectocarpus siliculosus]
Length = 1835
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
+E ++LL+LFG+P + A EAEA C L VD +T DSDAF FG + V K I +
Sbjct: 1306 EEVMDLLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSDR 1365
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
K E Y + D E LG+ ++A++LL+G+D+ GV+G+G+ A++ + F
Sbjct: 1366 KF-VEAYLLPDAEKDLGVGTDEVVALALLLGSDYT-EGVRGVGIVNAMEVINAF 1417
Score = 45.8 bits (107), Expect = 0.074, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MG+ W LL P R ++ L K +AVD+S W+ Q A++ + V H+ T
Sbjct: 1 MGIK-NLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTL 59
Query: 58 FRTIN-LFAKFGAFPVFVVDGTPSPLKSQARLAR 90
R + LF + PVFV DG LK++ AR
Sbjct: 60 RRVVKLLFHRIR--PVFVFDGGAPALKARTLAAR 91
>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
gi|317374874|sp|A6QV55.1|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
Length = 395
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLTSETGETTSHLMGMFYRTLRIVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A A+E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 148 MGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL + RK + + +L+G D+ L+ + +G +TAL+ +++
Sbjct: 208 HLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPKVGPNTALKLIRD 252
>gi|317374936|sp|C6HQJ2.2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLTSETGETTSHLMGMFYRTLRIVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A A+E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 148 MGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL + RK + + +L+G D+ L+ + +G +TAL+ +++
Sbjct: 208 HLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPKVGPNTALKLIRD 252
>gi|317374933|sp|C5GPA7.2|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317374934|sp|C5JVG7.2|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMSIYSFLVAVRSDGQQLMSETGETTSHLMGMFYRTLRIVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A A+E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAEDVEKFSRRTVRVTREHNEECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 148 MGVPYINAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL + RK + + +L+G D+ L+ + +G +TAL+ +++
Sbjct: 208 HLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPKVGPNTALKLIRD 252
>gi|387592620|gb|EIJ87644.1| flap endonuclease 1-B [Nematocida parisii ERTm3]
Length = 371
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 110/248 (44%), Gaps = 24/248 (9%)
Query: 6 KFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIK--------KNSVPKPHL 53
K +LLK A R ++ R +VA+D S + Q AI+ KN H+
Sbjct: 5 KLTELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAIRYGMDNLKNKNGETTAHI 64
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL--PVAEEGILVE 111
F++TINL K G PV++ DG P LK R R L V EE +
Sbjct: 65 YGIFYKTINLLEK-GIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLVEAVTEEEKVKH 123
Query: 112 RNQTFLKC---VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
+T V+ LL++ G+P + A EAE CA LN G V+ ++ D D+ FG
Sbjct: 124 AKRTVRATKYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSEDMDSLAFG 183
Query: 169 AKCVVKCIRPN-TKEPFECYCISDIEAGL---GLKRKHLIAMSLLIGNDHDLNGVQGIGL 224
K +++ P K+ IS +E L GL + I M +L+G D+ ++G+G
Sbjct: 184 GKILLRNFFPALMKKKLSVMEIS-LEMVLKQTGLDQSEFIDMCILLGCDY-CQKLKGMGP 241
Query: 225 DTALQFVQ 232
VQ
Sbjct: 242 KKVYDLVQ 249
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
+LLE FG+P + A EAE+ CA +N G A I+ DSD+ +FGAKC++K + F
Sbjct: 533 KLLEHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFY--NDKVF 590
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y + I LG+ RK L ++++ G D+ GV+GIG+ AL+ ++ +
Sbjct: 591 ELYTLDRIRRELGIGRKQLALIAIICGCDY-TTGVKGIGIVNALEVIKAY 639
>gi|402588539|gb|EJW82472.1| XPG domain-containing protein [Wuchereria bancrofti]
Length = 604
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++C LL + G+P + A GEAEA C +L G V I+ DSD +LFGA V K + N
Sbjct: 472 KDCQNLLRICGIPFVIAPGEAEAQCCELEKLGLVQGIISDDSDVWLFGAAVVYKNMF-NQ 530
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
K + Y + I LGL R I ++LL G D+ NG++G+G+ AL+ + F+
Sbjct: 531 KRRLQMYSMESIRNQLGLSRWEAIQIALLSGGDY-TNGLEGVGVVAALELISEFA 584
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK--PHLRLTFF 58
MG+ G W +L+P A L+ L KR+A+D+S W+ Q ++ + PHL L
Sbjct: 6 MGIQG-LWQVLEPVAEPVTLESLEGKRLAIDISIWLHQAAYGYSEHQLNAKYPHLSLVLR 64
Query: 59 RTINLFAKFGAFPVFVVDGTPSPL-KSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
R L + P+FV DG P+ K + R + ++ T+ A++ +L + + L
Sbjct: 65 RLAKLLF-YKIRPIFVFDGPNVPIFKKKLLRDRQVKRYVEELTMTKAQKHVLQQLASSQL 123
Query: 118 KCVQECV-ELLELFG 131
++ V EL E+F
Sbjct: 124 HGGEQQVDELSEVFA 138
>gi|332029719|gb|EGI69598.1| DNA repair protein complementing XP-G cells-like protein
[Acromyrmex echinatior]
Length = 417
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ +LL LFG+P + A EAEA CA L D IT DSD +LFG +CV K + K
Sbjct: 43 DAQDLLRLFGIPYIIAPMEAEAQCAYLEQIKLTDGTITDDSDIWLFGGQCVYKNFFNHNK 102
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
+ DI+ L R LI ++LL+G+D+ GV G+G TAL+ + F D N
Sbjct: 103 RMLR-FRACDIQHHFKLNRNQLIQLALLVGSDY-TTGVAGVGPVTALEILAAFPADGD-N 159
Query: 242 ILHKIGN 248
+LH + N
Sbjct: 160 VLHGLHN 166
>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
gi|73919351|sp|Q6L2I9.1|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
Length = 338
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 112/264 (42%), Gaps = 61/264 (23%)
Query: 28 VAVDLSYWIVQHETAIKKNSVP--------------------------------KPHLRL 55
+ V+LS +++HET++K NS HL
Sbjct: 1 MGVNLSSILIKHETSLKDNSGSIVSVDAYNIIYQFLSSIRGDDGEPLKDSNGNITSHLSG 60
Query: 56 TFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGI------- 108
F+RT NL PV+V DG P LKS+ R S I + EE I
Sbjct: 61 IFYRTSNLLEN-NIKPVYVFDGKPFHLKSETLRER---SLIKEKNIMKLEEAIASNDDAK 116
Query: 109 ---LVER-NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
L R N V E LL L G+P ++A E EA + + +G V+A ++ D D
Sbjct: 117 IRSLSSRINYITDDIVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYDC 176
Query: 165 FLFGAKCVVKCI------------RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGN 212
LFGAK +++ R P E +++ + LG+ R+ LI + +L G
Sbjct: 177 LLFGAKRILRNFTVYGRRRIAGTSRTINVNP-EIIDLNENLSNLGISREQLIYIGILTGT 235
Query: 213 DHDLNGVQGIGLDTALQFVQNFSE 236
D + GV+GIG TAL ++ +++
Sbjct: 236 DFN-PGVKGIGAKTALSLIKKYND 258
>gi|342879765|gb|EGU81001.1| hypothetical protein FOXB_08476 [Fusarium oxysporum Fo5176]
Length = 800
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 34/221 (15%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D++ W Q++ A + P +R F+R + L A P+FV DG P K
Sbjct: 37 RPLRIAIDIAIWQFQNQAAQGGTN---PEIRTLFYRLVRLLA-CPVEPIFVFDG---PYK 89
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
P + R +F + L+ LFG A GEAEA
Sbjct: 90 ------------------PAVKRNKKSGRGDSFANA--QAKRLIRLFGCNTHDAPGEAEA 129
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS--DIEA----GLG 197
CA L G VD +T D DA +FG +++ P +K +S D E G
Sbjct: 130 ECALLQKHGIVDMVLTEDVDALMFGCTKMLRQWSPASKRDTTPTHVSLFDTEKMKLDQHG 189
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ-NFSED 237
L R+ ++ ++L+ G D+D NG+ G G+ A++ + F D
Sbjct: 190 LDREGMVLVALMSGGDYDPNGLPGCGIKVAVEAAKAGFGRD 230
>gi|240278973|gb|EER42479.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 772
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 99/233 (42%), Gaps = 38/233 (16%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D+S W+ Q + + P LR F+R + L P+F+ DG P
Sbjct: 31 RPIRVAIDISIWLFQVQAGKGGTN---PELRTLFYRLVRLTG-LPVHPLFIYDGPQRP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQ---TFLKCVQECVELLELFGMPVLKAKGE 140
++ R G L++RN + ++ L++LF P A GE
Sbjct: 85 ------QYKR-------------GKLIDRNNRAGDLGRIIRRSKHLIDLFRFPHHTAPGE 125
Query: 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAGL 196
AEA CA+L + G VDA ++ D DA +FG+K + K T E+G
Sbjct: 126 AEAECARLQTSGVVDAVMSDDVDAIMFGSKVTIMNFSKESSSGTNAATHVTLYQTEESGN 185
Query: 197 GLKRKHL------IAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
G KR L I +LL G D+ GV G A + Q +E+L +
Sbjct: 186 GRKRNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAGEITQAGFGNELLQAI 238
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 112/253 (44%), Gaps = 29/253 (11%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S I Q A++++ + HL +RTI + G P +V D
Sbjct: 29 RKVAIDASMSIYQFLIAVRQSDGQQLTNEAGETTSHLMGMLYRTIRMVEN-GIKPAYVFD 87
Query: 77 GTPSPLKS---QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV-------QECVEL 126
G P LKS Q R R + +A T E G N+ + V QEC L
Sbjct: 88 GKPPTLKSGELQKRGERRAEAQKEADT--ALETGDTENFNRFSRRTVKVTKEQNQECRRL 145
Query: 127 LELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPF 184
L+L G+P+++A EAEA CA L G V A + D D FGA +++ K P
Sbjct: 146 LKLMGIPIVEAPCEAEAQCAALAKAGKVYAAGSEDMDTLTFGAPVLLRHLTFSEAKKIPI 205
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILH 244
+ + GL I + +L+G D+ + ++GIG A+Q ++ I NI+
Sbjct: 206 SEFNTQKVLEGLNFSHDEFIDLCILLGCDY-CDSIRGIGPHRAVQLMKEHR--TIENIIK 262
Query: 245 KIGNG--DIPQYW 255
I +P+ W
Sbjct: 263 SIDKTKYKVPENW 275
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
+LL+ FG+P + A EAE+ CA +N G A I+ DSD+ +FGAKC++K + F
Sbjct: 594 KLLDHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFY--NDKVF 651
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y + I LG+ RK L ++++ G D+ NGV+GIG+ AL+ ++ +
Sbjct: 652 ELYKLDRIRRELGIGRKQLALIAIICGCDY-TNGVKGIGIVNALEVIKAY 700
>gi|367047833|ref|XP_003654296.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
gi|347001559|gb|AEO67960.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
Length = 359
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 15/217 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R L A+E E
Sbjct: 27 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELARRFQRKQEANEGLEEAKETGTAE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC LL L G+P + A EAEA CA L G V A + D D
Sbjct: 86 DVEKFSRRTVRVTKEHNAECQRLLRLMGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F +++ KEP + ++ + GL + RK + + +L+G D+ L+ +
Sbjct: 146 TLCFDTPILLRHLTFSEQRKEPIQEIHLAKVLEGLNMDRKQFVDLCILLGCDY-LDPIPK 204
Query: 222 IGLDTALQFVQNFSE-DEILNILHKIGNG--DIPQYW 255
+G TAL+ ++ ++++ + G IP W
Sbjct: 205 VGPSTALKLIREHGTLEKVVEFMRNDPKGRYTIPDDW 241
>gi|401625605|gb|EJS43605.1| rad2p [Saccharomyces arboricola H-6]
Length = 1034
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
+ ++ ++ ++E ELL FG+P + A EAEA CA+L VD IT DSD FLFG
Sbjct: 766 DSDEVTIEMIKEVQELLSRFGIPYVTAPMEAEAQCAELLQLKLVDGIITDDSDVFLFGGT 825
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K + + K E Y I LGL RK++I ++ L+G+D+ NG++G+G ++++
Sbjct: 826 KVYKNMF-HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEV 883
Query: 231 VQNF 234
+ F
Sbjct: 884 IAEF 887
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG PVFV DG LK +
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRET 87
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 28/254 (11%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++N + HL F+RT+ + +G P++V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQNDGQQLMTESGETTSHLLGFFYRTLRMI-DYGIKPMYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER-NQTFLKCV-------QECVELLE 128
GTP LK + RF R ++ VE+ +Q + V +E +LL+
Sbjct: 88 GTPPDLKKELLKKRFGRREEAREQEEEQKDVADVEKMDQLARRQVRPTRQHNEEVRQLLK 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
L G+P + A EAEA CA+L G V A + D D FG ++K + + ++ +
Sbjct: 148 LMGIPCVIAPSEAEAQCAELARAGKVYAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQ 207
Query: 189 ISDIEA--GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ +A GL + I + +L+G D+ L+ ++GIG TAL+ ++ E N++ +
Sbjct: 208 VDLPKALEGLQMDMPQFIDLCILLGCDY-LDPIKGIGPKTALKLIREHKSLE--NVVEHL 264
Query: 247 -----GNGDIPQYW 255
+ IP++W
Sbjct: 265 KEEAKKSVQIPEHW 278
>gi|390603405|gb|EIN12797.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 384
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 26/257 (10%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAFPVF 73
L ++VA+D S I Q A+++ + HL F+RTI + G P +
Sbjct: 26 LFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDSGETTSHLMGFFYRTIRIVEN-GIKPAY 84
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVE 125
+ DG P LKS RF + A+E E F + +EC +
Sbjct: 85 IFDGKPPELKSGVLAKRFEKREEAKEEGEEAKETGTAEDMDRFSRRTVKVTREHNEECRK 144
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEP 183
LL L G+PV+ A EAEA CA+L G V A + D D F A +++ K P
Sbjct: 145 LLRLMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILLRHLTFSEAKKTP 204
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNI 242
++ GL + I + +L+G D+ L ++G+G TAL+ ++ ++
Sbjct: 205 ISEINLAKALEGLQMDMSQFIDLCILLGCDY-LEPIKGVGPKTALKLIREHGGLAGVMEH 263
Query: 243 LHKIGNG----DIPQYW 255
L + G G IP+YW
Sbjct: 264 LREKGKGKGGVQIPEYW 280
>gi|367004070|ref|XP_003686768.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
gi|357525070|emb|CCE64334.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
Length = 1051
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E Q +K VQE LL FG+P + A EAEA CA+L VD IT DSD FLFG
Sbjct: 785 EVTQDMIKSVQE---LLTRFGIPYIVAPMEAEAQCAELLKLKLVDGIITDDSDVFLFGGS 841
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
V K + + K E Y + LGL+R +LI ++LL+G+D+ +G++GIG + ++
Sbjct: 842 KVYKNMF-HEKNYVEFYDQDKLTVQLGLERSNLIDLALLLGSDY-TSGIKGIGPVSGIEI 899
Query: 231 VQNF 234
+ F
Sbjct: 900 IAEF 903
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD++ P A+ L+ L DK +AVD S WI Q A++ NSV H+ + F
Sbjct: 1 MGVHS-FWDIVGPTAKPVRLESLEDKVMAVDASIWIYQFLKAVRDNEGNSVNNAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGVKPVFVFDGGVPVLKRETIRQRKER 94
>gi|317419778|emb|CBN81814.1| Flap endonuclease 1-B [Dicentrarchus labrax]
Length = 380
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + +C +LL L
Sbjct: 88 KPPQLKSAELEKRGERRAEAEKLLAQAQEMGEQENIDKFSKRLVKVTKQHNDDCKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYIEAPCEAEATCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
S + +GL + I + +L+G D+ ++GIG A+ + Q+ +EIL
Sbjct: 208 HFSRMLQDIGLTNEQFIDLCILLGCDY-CATIKGIGPKRAIDLIRQHGCIEEIL 260
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 21/232 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
K +A+D S + Q A +S LR FFRT+ F + PVFV DG P P++
Sbjct: 29 KVIALDTSVVVNQFRAATPLSS----PLRGLFFRTLT-FLEHDIKPVFVFDGKP-PVEKL 82
Query: 86 ARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALC 145
L + R+ + P+ GI +QT ++C+E+L+ G+PV++A G+AE LC
Sbjct: 83 PLLEK--RAEAAGWSRPL-RTGI--ASSQT-----RDCLEVLKHLGVPVVQAPGDAEGLC 132
Query: 146 AQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIA 205
A L EG A + D D FGA +++ + Y + + L + + L+
Sbjct: 133 ASLVREGRAHAVASEDMDTLPFGANVLIRQLNAKKDSEIVEYSLPKLLEALRISLEELVD 192
Query: 206 MSLLIGNDHDLNGVQGIGLDTALQFVQNFS--EDEILNILHKIGNGDIPQYW 255
+ +L+G D+ + + G+G AL +Q E+ +LNI + +P W
Sbjct: 193 LCILLGCDY-CDKIPGLGPKRALALIQKHRTIENVLLNINRE--THPVPHLW 241
>gi|325090233|gb|EGC43543.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 827
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 99/233 (42%), Gaps = 38/233 (16%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D+S W+ Q + + P LR F+R + L P+F+ DG P
Sbjct: 31 RPIRVAIDISIWLFQVQAGKGGTN---PELRTLFYRLVRLTG-LPVHPLFIYDGPQRP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQ---TFLKCVQECVELLELFGMPVLKAKGE 140
++ R G L++RN + ++ L++LF P A GE
Sbjct: 85 ------QYKR-------------GKLIDRNNRAGDLGRIIRRSKHLIDLFRFPHHTAPGE 125
Query: 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAGL 196
AEA CA+L + G VDA ++ D DA +FG+K + K T E+G
Sbjct: 126 AEAECARLQTSGVVDAVMSDDVDAIMFGSKVTIMNFSKESSSGTNAATHVTLYQTEESGN 185
Query: 197 GLKRKHL------IAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
G KR L I +LL G D+ GV G A + Q +E+L +
Sbjct: 186 GRKRNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAGEITQAGFGNELLQAI 238
>gi|410912947|ref|XP_003969950.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Takifugu rubripes]
Length = 875
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL+LFG+P L A EAEA CA L+ + + IT DSD +LFG + V K K
Sbjct: 477 ESQELLQLFGVPFLVAPMEAEAQCAALDRDDHTHGTITDDSDVWLFGGRHVYKNFFSQNK 536
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + SD++ LGL R LI ++ L+G+D+ GV G+G T ++ + F+
Sbjct: 537 Y-VEYFQYSDLQNVLGLDRAKLINLAYLLGSDY-TEGVAGVGYVTGMEVLNEFT 588
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + + L K +AVD+S W+ Q ++ NSV HL LT
Sbjct: 1 MGVHG-LWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F I F PVFV DG LK Q R R
Sbjct: 59 FHRICKLLFFRIKPVFVFDGEAPLLKKQTLALRRQR 94
>gi|242781940|ref|XP_002479901.1| Rad2-like endonuclease, putative [Talaromyces stipitatus ATCC
10500]
gi|218720048|gb|EED19467.1| Rad2-like endonuclease, putative [Talaromyces stipitatus ATCC
10500]
Length = 883
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 42/228 (18%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPL- 82
R R+AVD+S W+ Q + + P LR FFR + L A P+FV DG P
Sbjct: 47 RPIRIAVDISIWLFQLQAGRGGQN---PELRTLFFRLVRLLA-LPVHPLFVYDGKQKPPF 102
Query: 83 -KSQARLARFYRST--IDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKG 139
+ +A R Y + I+ S + L++LF P A G
Sbjct: 103 KRGKATTGRSYGNAPIINLSKI------------------------LIDLFKFPRHDAPG 138
Query: 140 EAEALCAQLNSEGYVDACITADSDAFLFGAKCVV------KCIRPNTKEPFECYCIS--- 190
EAEA CA+L G VDA ++ D D +FG+ V +CY
Sbjct: 139 EAEAECARLQQAGVVDAVMSNDIDTLMFGSGLTVMNYSKESSTGTTAATHVDCYATETQL 198
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ-NFSED 237
D+EA + L R ++ ++L G D+ +GV G A + + F ED
Sbjct: 199 DVEANVKLSRAGMVLFAMLSGGDYLPSGVTKCGPGLAGEIAKAGFGED 246
>gi|449510827|ref|XP_004163772.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Cucumis
sativus]
Length = 382
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAS-----TLPVAEEGILVERNQTFLKCVQE----CVELL 127
G P LK Q LA+ Y DA+ + V + + + ++ +K ++ C LL
Sbjct: 88 GKPPDLKXQ-ELAKRYSKRADATEDLADAIEVGNKDDIEKFSKRTVKVTKQHNDDCKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFE 185
L G+PV++A EAEA CA L G V A + D D+ FG+ ++ + P++++ P
Sbjct: 147 RLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ I L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL ++
Sbjct: 207 EFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRGIGGLTALKLIRQHGSIESILENIN 265
Query: 245 KIGNGDIPQYW 255
K IP W
Sbjct: 266 K-ERYQIPDDW 275
>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
gi|317374913|sp|D2V434.1|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
Length = 387
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 22/239 (9%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A+K K+ HL+ RT + ++G P +V DG
Sbjct: 29 RKVAIDASMAMYQFLIALKNTGMDLTDKDGEVTNHLQGLLARTTKML-EYGIKPCYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA-EEG---ILVERNQTFLKCVQE----CVELLEL 129
P LKS R R +A EEG +V N+ + +E +LL L
Sbjct: 88 KPPQLKSGELEKRKERQKEAMEQFALAQEEGDEEKMVMWNKRTTRMTKEQSNDGKKLLRL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+PV++A GEAEA CA+L G V A T D DA + + + K+P + +
Sbjct: 148 MGVPVVEAPGEAEAQCAELCKGGLVYATATEDMDALTYATPVLARHLTFSEARKQPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ GLG+ I + +L G D+ + ++GIG AL ++ + I N+L I
Sbjct: 208 TFKQVIEGLGVTVDQFIDICILCGCDY-TDSIKGIGPKKALAMIKKYG--NIENLLKNI 263
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G PV+V DG
Sbjct: 153 RKVAIDASMSIYSFLIAVRSDGQQLTSETGETTSHLMGMFYRTLRIVDN-GIKPVYVFDG 211
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A A+E E + F + +EC +LL+L
Sbjct: 212 APPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKL 271
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP
Sbjct: 272 MGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEI 331
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL + RK + + +L+G D+ L+ + +G +TAL+ +++
Sbjct: 332 HLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPKVGPNTALKLIRD 376
>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
Length = 354
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 124/268 (46%), Gaps = 33/268 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDF--LRDKRVAVDLSYWIVQHETAIKK-NSVP-------- 49
MGV K DL+ P + E D L + +A D + Q AI++ + P
Sbjct: 1 MGVNLK--DLITPECKLEIDDLRQLSGRIIAFDAYNALYQFLAAIRQTDGTPLMDSKGRI 58
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGI 108
HL F+RTIN F + G P++V DG P +K + R R A A EG
Sbjct: 59 TSHLSGLFYRTIN-FLENGIKPIYVFDGKPPEIKRKELEQRRIRKERAAKMAEKAYSEGN 117
Query: 109 LVERNQTFLKC-------VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
+ E ++ ++ V+E ELL+ G+PV++A E EA A + +G A + D
Sbjct: 118 IEEASKYVVQAIFLTDEMVKEAKELLDAMGIPVIQAAEEGEAEAAYIAKKGLAWATASQD 177
Query: 162 SDAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLI 210
D+ LFGA +V+ + K E + + LG+ + LI +++LI
Sbjct: 178 YDSLLFGAPRLVRNLTITGKRKLPGKDIYIEIKPEIIELEKLLKTLGITHEQLIDIAILI 237
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDE 238
G D++ +GV+GIG TA Q ++ + E
Sbjct: 238 GTDYNPDGVEGIGPKTAYQLIKAYGSLE 265
>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
Length = 380
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 26/253 (10%)
Query: 26 KRVAVDLSYWIVQH---------ETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+R+AVD S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 29 RRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQ--ARLARFYRSTIDAST--LPVAEEG---ILVERNQTFLKCV----QECVE 125
G P LK Q A+ Y DA+ EEG + + ++ +K +EC
Sbjct: 88 GKPPDLKKQELAKRHDMYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKR 147
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-P 183
LL L G+PV++A EAEA CA L V A + D D+ FGA ++ + P++K+ P
Sbjct: 148 LLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIP 207
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNI 242
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL
Sbjct: 208 VMEFEVAKVLEELELTMDQFIDLCILSGCDY-CDSIKGIGGQTALKLIRQHGSIESILEN 266
Query: 243 LHKIGNGDIPQYW 255
++K IP+ W
Sbjct: 267 INK-DRYQIPEDW 278
>gi|47230549|emb|CAF99742.1| unnamed protein product [Tetraodon nigroviridis]
Length = 866
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P L A EAEA CA L+ + IT DSD +LFG + V K K
Sbjct: 676 ESQELLRLFGVPFLIAPMEAEAQCAALDRADHTHGTITDDSDVWLFGGRHVYKNFFSQNK 735
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + SD++ LGL R LI ++ L+G+D+ GV G+G T ++ + F+
Sbjct: 736 Y-VEYFQYSDLQNALGLDRTKLINLAYLLGSDY-TEGVAGVGYVTGMEVLNEFT 787
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + + L K +AVD+S W+ Q ++ NSV HL LT
Sbjct: 1 MGVHG-LWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F I F PVFV DG LK Q R R
Sbjct: 59 FHRICKLLFFRIRPVFVFDGEAPLLKKQTLALRRQR 94
>gi|242091235|ref|XP_002441450.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
gi|317374865|sp|C5YUK3.1|FEN11_SORBI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|241946735|gb|EES19880.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
Length = 380
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 23/250 (9%)
Query: 26 KRVAVDLSYWIVQH---------ETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYR---STIDASTLPVAEEGILVER--NQTFLKCVQ---ECVELLE 128
G P +K + RF + +T D A + VE+ +T Q +C LL
Sbjct: 88 GKPPDMKKEELAKRFSKREDATNDLKEAVEAGDKDAVEKLSKRTVKVTAQHNDDCKRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFEC 186
L G+PV++A EAEA CA L V A + D D+ FGA ++ + P++K+ P
Sbjct: 148 LMGVPVVEAPSEAEAECAALCKNDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVME 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ + L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL L+K
Sbjct: 208 FDVAKVLEELELTMDQFIDLCILCGCDY-CDSIKGIGGQTALKLIRQHGSIESILENLNK 266
Query: 246 IGNGDIPQYW 255
IP+ W
Sbjct: 267 -DRYQIPEDW 275
>gi|424513647|emb|CCO66269.1| DNA excision repair protein Rad2 [Bathycoccus prasinos]
Length = 1311
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
+E ELL L G+P + A EAEA CA LN G VD T DSD FLFGA V + NT
Sbjct: 876 REVQELLMLLGIPYVVAPEEAEAECAHLNRTGKVDGVFTNDSDVFLFGATLVFRNAFENT 935
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
K + Y S IE LGL R+ +I +++L+G+D+ + G+ GIG+ A++ + FS+
Sbjct: 936 K-AIQMYKSSRIEKQLGLNRERMIQLAMLLGSDYTV-GIDGIGIVNAMEVLAGFSD 989
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV W +L+P A LD L K +AVD S W++Q A++ + + H+ L F
Sbjct: 1 MGVKD-LWTILEPSAERVNLDALTGKTIAVDASIWMMQFLKAMRDDRGEPIANAHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILV 110
+ I FPVFV DG +K R +S TL A E IL+
Sbjct: 59 LKRIIKLLHLRVFPVFVFDGKTPGIKRACVRERKRKSLEAKLTLRKAAETILM 111
>gi|365983062|ref|XP_003668364.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
gi|343767131|emb|CCD23121.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
Length = 1021
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
VQ+ +LL FG+P + A EAEA CA+L VD +T DSD FLFG V K +
Sbjct: 760 MVQDVQDLLSRFGIPFIVAPMEAEAQCAELLHLNLVDGIVTDDSDVFLFGGSKVYKNMF- 818
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ K E Y + I +GL R ++I M+ L+G+D+ NGV+G+G ++L+ + F
Sbjct: 819 HEKNYVEFYDSASILRNIGLDRINMIEMAQLLGSDY-TNGVKGMGPVSSLEIIAEF 873
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD++ ++ L+ L+DK++A+D S WI Q A++ N V H+ F
Sbjct: 1 MGVHS-FWDVVARTSKPVRLESLQDKKMAIDASIWIYQFLKAVRDENGNKVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG PVFV DG LK +
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGVPVLKRET 87
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 21/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + A++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSLYSFLIAVRSGGEQLMSDTGETTSHLMGMFYRTLRIVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + A+E E + F + E LL+L
Sbjct: 88 APPKLKSGELAKRFQRKSEAQEQHEEAKETGTAEEVERFSRRTVRVTKEHNAEAQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGVPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLTFNAPVLLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHKI 246
+ + GL I M +L+G D+ L+ V+GIG A ++ ++++ + K
Sbjct: 208 HLDRVLEGLDFDLNQFIDMCILLGCDY-LDPVKGIGPKNAHALIKEHKTLEKVVEHIEKT 266
Query: 247 GNGDIPQYW 255
G +P+ W
Sbjct: 267 GKYTLPEDW 275
>gi|340367941|ref|XP_003382511.1| PREDICTED: flap endonuclease 1-like [Amphimedon queenslandica]
Length = 373
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMSLYQFLIAVRQDGQVLMTESGETTSHLMGFFYRTIRMVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQECVELLEL 129
P +KS R R L AEE ++ + F K V E +LL L
Sbjct: 88 KPPTMKSGELAKRADRRAEAQKELLKAEEQGDIQEVEKFQKRLVKVTPEHVSEAKKLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P ++A EAEA CA L G V A T D DA FG+ +V+ + + K P
Sbjct: 148 MGIPYVEAPCEAEAQCAALTKAGKVYATATEDMDALTFGSSILVRNLTASEARKLPVREI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+S L + + I + +L+G D+ + ++GIG A++ ++ I IL +
Sbjct: 208 NLSKALTELDMDQSQFIDLCILLGCDY-CDSIKGIGPVNAMKLLRQHG--NIEKILKGLS 264
Query: 248 NG--DIPQYW 255
IP+ W
Sbjct: 265 GKKYQIPENW 274
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMSDAGETTSHLMGMFYRTLRIVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LK R R A+E E + F + +EC +LL+L
Sbjct: 88 APPKLKGGELAKRSARKREAHEAHEEAKETGTAEDMEKFSRRTVRVTREHNEECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ GLG+ RK I + +L+G D+ L + +G +TAL+ ++
Sbjct: 208 HLDKALEGLGMDRKQFIDLCILLGCDY-LEPIPKVGPNTALKLIRE 252
>gi|307214986|gb|EFN89831.1| Flap endonuclease 1-B [Harpegnathos saltator]
Length = 380
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 107/250 (42%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++ HL F+RTI L + G PV+V DG
Sbjct: 29 RKIAIDASMCLYQFLIAVRSEGAQLTTVDGETTSHLMGIFYRTIRLVEQ-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVER----NQTFLKCV----QECVELLEL 129
P LK R R L AEE E N+ +K +E +LL+L
Sbjct: 88 KPPNLKGGELAKRAERRDEAQKLLQAAEEDGDAEAIDKFNRRLVKVTKTHAEEAKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG +++ K P +
Sbjct: 148 MGIPYIDAPCEAEAQCAALVKAGKVFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L I + +++G D+ ++G+G A++ ++N E I+ I
Sbjct: 208 HFDKVLGGLELNHNEFIDLCIMLGCDY-TGSIKGVGPKRAIELIKNHKSLE--KIIENID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TKKFPVPEDW 274
>gi|156836721|ref|XP_001642408.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112928|gb|EDO14550.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1037
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
ELL FG+P + A EAEA CA+L VD IT DSD FLFG + K + K+
Sbjct: 782 ELLSRFGIPYIVAPMEAEAQCAELLLLKLVDGIITDDSDVFLFGGAKIYKNMF-QEKKYV 840
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y + I + L L RK++I ++LL+G+D+ NGV+G+G +++ + +F
Sbjct: 841 EFYDVQSINSNLALDRKNMIDLALLLGSDY-TNGVKGLGPVLSMEVLADF 889
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV WD+L P AR L+ L D+++AVD S WI Q A+ K N+V H+ + F
Sbjct: 1 MGVHS-LWDILGPTARPVRLESLHDQKMAVDASIWIYQFLKAVRDNKGNAVKDAHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I +G PVFV DG LK
Sbjct: 59 FRRICKLLFYGIKPVFVFDGGVPALK 84
>gi|392589119|gb|EIW78450.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 386
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 33/224 (14%)
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
L+ FFR + L A + +FV DG+ P + + R +S PV +G+
Sbjct: 94 LKTLFFRLLQLAATPARY-LFVFDGSARPAIKRNKHVR------TSSPFPV--KGL---- 140
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
+ F++ + G A GEAEA A LN G +DA +T DSDAFLFGAKCV
Sbjct: 141 -KAFIRAM----------GFDCHDAPGEAEAELAALNGLGVIDAVMTTDSDAFLFGAKCV 189
Query: 173 VKCIRPNTKEPF--ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
++ N +P+ + Y + + L R L+ M+LL+G D+ G+ G G TA
Sbjct: 190 LRMYVIN-HDPYTIQLYTQERLTNTVDLSRGGLVLMALLVGGDYH-PGLPGCGTATAYAL 247
Query: 231 VQ-NFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMP 273
Q F +D + +LH D P + + +SH+ P
Sbjct: 248 AQYGFGDDLVDAMLH----ADQPNLSAFLATLRGQISHAANVDP 287
>gi|388582448|gb|EIM22753.1| hypothetical protein WALSEDRAFT_44472 [Wallemia sebi CBS 633.66]
Length = 811
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 111/276 (40%), Gaps = 64/276 (23%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFL------------RDKRVAVDLSYWIVQHETAIKKNSV 48
MGV G WDLL+P A L L R RV VD S W++ +TA +
Sbjct: 1 MGVPG-LWDLLRPAACSHSLSRLAVDAFIANHRGYRGLRVGVDASIWLIHSQTAPGGLN- 58
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGI 108
P LR FF+ NL + P+FV DG P + + R +
Sbjct: 59 --PALRTLFFKLCNLLS-LPILPLFVFDGPKRPKMKRGKQVRGAQP-------------- 101
Query: 109 LVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
+ +++ ++L++ FG A GEAEA A+L+ G +D ++ D D+ LFG
Sbjct: 102 ---------RGLKDFIKLIDAFGFEYHNAPGEAEAELARLSKAGIIDVVLSDDVDSLLFG 152
Query: 169 AKCVVK----CIRPNTKEP------------------FECYCISDI--EAGLGLKRKHLI 204
+++ + N+K E Y + DI G+ LI
Sbjct: 153 GVKILRNWSLGLSGNSKSQADLHNINNDDSLAADDHRIETYTLDDICRHDETGVTPNGLI 212
Query: 205 AMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
++LL G D+ GVQ G A + D+++
Sbjct: 213 LVALLAGGDYHPAGVQSCGTKNAFGLARAGFGDKLI 248
>gi|225685184|gb|EEH23468.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb03]
Length = 359
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R + A A+E E
Sbjct: 27 HLMGMFYRTLRIVDN-GIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEIGTAE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 86 DVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + GL + RK + + +L+G D+ L+ +
Sbjct: 146 TLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPK 204
Query: 222 IGLDTALQFVQN 233
IG +TAL+ +++
Sbjct: 205 IGPNTALKLIRD 216
>gi|195116755|ref|XP_002002917.1| GI10377 [Drosophila mojavensis]
gi|193913492|gb|EDW12359.1| GI10377 [Drosophila mojavensis]
Length = 1255
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C +LL LFG+P + A EAEA CA LN+ G + IT DSD +LFG + V K K
Sbjct: 870 DCQDLLRLFGIPYIVAPMEAEAQCAFLNAVGITNGTITDDSDIWLFGGRTVYKNFFAQNK 929
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 930 HVLE-FRAEQIEKTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 981
>gi|348516587|ref|XP_003445820.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oreochromis niloticus]
Length = 1119
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P L A EAEA CA L+ + IT DSD +LFG + V K K
Sbjct: 730 ESQELLRLFGVPYLVAPMEAEAQCAALDWADHTHGTITDDSDVWLFGGRHVYKNFFSQDK 789
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y SD+++ LGL R +I ++ L+G+D+ GV G+G T ++ + F
Sbjct: 790 Y-VEHYQYSDLQSQLGLDRTKMINLAYLLGSDY-TEGVPGVGYVTGMEILNEF 840
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + + L K +AVD+S W+ Q ++ NSV HL LT
Sbjct: 1 MGVHG-LWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVHNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F I F PVFV DG LK Q R R
Sbjct: 59 FHRICKLLFFRIRPVFVFDGDAPLLKKQTLALRRQR 94
>gi|325094624|gb|EGC47934.1| DNA repair protein RAD2 [Ajellomyces capsulatus H88]
Length = 359
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R + A A+E E
Sbjct: 27 HLMGMFYRTLRIVDN-GIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 86 EVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + GL + RK + + +L+G D+ L+ +
Sbjct: 146 TLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPK 204
Query: 222 IGLDTALQFVQN 233
+G +TAL+ +++
Sbjct: 205 VGPNTALKLIRD 216
>gi|317374926|sp|Q0CBS0.2|FEN1_ASPTN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 27/253 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R T A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRTARKTEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+S GL + R I + +L+G D+ L + +G +TAL+ +++ E ++ I
Sbjct: 208 HLSRALEGLDMDRAKFIDLCILLGCDY-LEPIPKVGPNTALKLIRDHGSLE--KVVEYIQ 264
Query: 248 NGD-----IPQYW 255
N IP+ W
Sbjct: 265 NDPKKKYVIPEDW 277
>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
1221n]
Length = 363
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 31/248 (12%)
Query: 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKF 67
E L L K + +D + Q AI++ N HL F+RTIN+ +
Sbjct: 27 IEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINI-VEA 85
Query: 68 GAFPVFVVDGTPSPLKS---------QARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
G PV+V DG P LK+ + A+ Y + + L +A ++ T +
Sbjct: 86 GIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTE-E 144
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V++ LL+ G+P ++A E EA A + +G A + D D+ LFG+ +V+ +
Sbjct: 145 MVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTI 204
Query: 179 NTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
+ + E + + LG+ ++LI + +L+G D++ +G +GIG A
Sbjct: 205 SGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKA 264
Query: 228 LQFVQNFS 235
LQ V+ +
Sbjct: 265 LQLVKAYG 272
>gi|225555317|gb|EEH03609.1| DNA-repair protein rad2 [Ajellomyces capsulatus G186AR]
Length = 359
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R + A A+E E
Sbjct: 27 HLMGMFYRTLRIVDN-GIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 86 EVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + GL + RK + + +L+G D+ L+ +
Sbjct: 146 TLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPK 204
Query: 222 IGLDTALQFVQN 233
+G +TAL+ +++
Sbjct: 205 VGPNTALKLIRD 216
>gi|443720454|gb|ELU10206.1| hypothetical protein CAPTEDRAFT_21886 [Capitella teleta]
Length = 377
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RT+ + G PV+V DG
Sbjct: 29 RKVAIDASMCIYQFLIAVRQEGNMLTNADGETTSHLMGIFYRTLRMI-DHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P +KS R R L AEE E + F K + +EC +LL L
Sbjct: 88 KPPDMKSGELSKRAGRREEAQKALEKAEEAGEAENVEKFSKRLVKVTKEHNEECKQLLGL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P ++A EAEA CA L G+V A T D DA FG+ +++ K P + +
Sbjct: 148 MGIPFVEAPCEAEAQCASLVKGGHVYATGTEDMDALTFGSTVLLRHLTFSEARKMPIKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL-NILHK 245
+ + AGL L + I + +L+G D+ + ++GIG A+ + Q+ S + +L NI K
Sbjct: 208 SLEKVLAGLELSYEEFIDLCILLGCDY-CDSIRGIGPKRAVDLIKQHRSIEAVLKNIDTK 266
Query: 246 IGNGDIPQYW 255
IP+ W
Sbjct: 267 --KYTIPEDW 274
>gi|366994113|ref|XP_003676821.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
gi|342302688|emb|CCC70465.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
Length = 1000
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ +Q+ ELL FG+P + A EAEA CA+L VD +T DSD FLFG + K +
Sbjct: 739 EMIQDVQELLSRFGVPYITAPMEAEAQCAELLQLKLVDGVVTDDSDVFLFGGSKIYKNMF 798
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ K E Y I LGL R+++I ++ L+G+D+ NG++G+G ++L+ + F
Sbjct: 799 -HEKNYVEFYDSESILRNLGLDRENMIELAELLGSDY-TNGIKGMGPVSSLEVLAEF 853
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD++ P AR L L+DK++AVD S WI Q A++ N V H+ F
Sbjct: 1 MGVHS-FWDVVGPTARPVRLKSLQDKKMAVDASIWIYQFMKAVRDQDGNRVSNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLYFGIQPVFVFDGGVPALK 84
>gi|449435964|ref|XP_004135764.1| PREDICTED: flap endonuclease 1-like [Cucumis sativus]
Length = 377
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 25/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++A+D S I Q + ++ HL+ F RTI L + G PV+V D
Sbjct: 29 RKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDAS-----TLPVAEEGILVERNQTFLKCVQE----CVELL 127
G P LK Q LA+ Y DA+ + V + + + ++ +K ++ C LL
Sbjct: 88 GKPPDLKKQ-ELAKRYSKRADATEDLADAIEVGNKDDIEKFSKRTVKVTKQHNDDCKRLL 146
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFE 185
L G+PV++A EAEA CA L G V A + D D+ FG+ ++ + P++++ P
Sbjct: 147 RLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVM 206
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILH 244
+ ++ I L L I + +L G D+ + ++GIG TAL+ + Q+ S + IL ++
Sbjct: 207 EFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRGIGGLTALKLIRQHGSIESILENIN 265
Query: 245 KIGNGDIPQYW 255
K IP W
Sbjct: 266 K-ERYQIPDDW 275
>gi|440632113|gb|ELR02032.1| hypothetical protein GMDG_05194 [Geomyces destructans 20631-21]
Length = 842
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 89/210 (42%), Gaps = 30/210 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+AVD+S W + + P P LR F+R + L A +FV DG PL
Sbjct: 31 RPFRIAVDISIWNFEVQGG---KGGPNPALRTLFYRLVRL-AGTSVQAIFVFDGPDRPLL 86
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ + R + +L V+ LL+LFG A GEAEA
Sbjct: 87 KRNKTRR--------------------KGGSAYLADVRRTKLLLQLFGFESHDAPGEAEA 126
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCISDI----EAGLG 197
CA L G VDA ++ D D +FG+ ++ + K P + D E G
Sbjct: 127 ECALLQQRGLVDAVLSEDVDTLMFGSGITIRDWSCEGSGKTPPTHVSLYDAKVTKEGKSG 186
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
L R+ +I ++L+ G D+D GV G A
Sbjct: 187 LDREGMILVALMSGGDYDTAGVARCGAKIA 216
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 126/269 (46%), Gaps = 44/269 (16%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L L +K VA+D + Q AI+ ++ P HL F+RTIN+ G
Sbjct: 20 LKSLSNKSVALDAYNTLYQFLAAIRGEDGRPLMDSKGRVTSHLSGLFYRTINMLEN-GIK 78
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL---VERNQTFLKC-------- 119
+V DG P LK++ + R R + EE + VE + + +
Sbjct: 79 VAYVFDGAPPKLKTR-EIER--RQKLKQEAEKKYEEAVRRGDVEEARKYAQMSAKLTKEM 135
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR-- 177
V+E LLE G+P ++A E EA A + ++G V A + D D+ LFG+ +V+ +
Sbjct: 136 VEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQDYDSLLFGSPRLVRNLAVS 195
Query: 178 -----PNTK-------EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
PN E C+ + LG+ R+ L+A+++LIG D+ GV+G+G
Sbjct: 196 GRRKLPNKNVYVEVKPEEITLKCVLE---ELGITREQLVAIAVLIGTDYT-PGVKGVGPK 251
Query: 226 TALQFVQNFSEDEILNILHKIGNGDIPQY 254
TAL++V+++ + E +L +G D Y
Sbjct: 252 TALRYVKSYGDLE--RVLTALGVDDKELY 278
>gi|327350064|gb|EGE78921.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ATCC 18188]
Length = 402
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R + A A+E E
Sbjct: 70 HLMGMFYRTLRIVEN-GIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAE 128
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 129 DVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLARAGKVYAAASEDMD 188
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + GL + RK + + +L+G D+ L+ +
Sbjct: 189 TLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPK 247
Query: 222 IGLDTALQFVQN 233
+G +TAL+ +++
Sbjct: 248 VGPNTALKLIRD 259
>gi|302418945|ref|XP_003007303.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261352954|gb|EEY15382.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 833
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D++ W Q + A + P +R F+R + L PVFV DG PL
Sbjct: 31 RPLRVAIDIAIWQFQAQAAKGGTN---PAIRTFFYRLVRLVG-LPVQPVFVFDGPNKPLF 86
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
R R R AS + L+ LFG P+ +A GEAEA
Sbjct: 87 K--RNKRSGRGDGIASAM---------------------AKRLIRLFGFPIHQAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVK-----CIRPNTKEPFECYCISDIEAGL-- 196
CA L EG VDA ++ D D +FG + +R K P E L
Sbjct: 124 ECALLQQEGLVDAVLSEDVDTIMFGCSRTFRNWSAEGLR-GGKSPTHVTVYDTNEQSLVA 182
Query: 197 -GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
GL R+ ++ ++L+ G D+ GV G GL A + +
Sbjct: 183 SGLDRQGMVLVALMSGGDYLPEGVPGCGLKLACEVAR 219
>gi|358060342|dbj|GAA93747.1| hypothetical protein E5Q_00393 [Mixia osmundae IAM 14324]
Length = 1209
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ +E +L LFG+P + A EAEA CAQL G VD IT DSD FLFG V K +
Sbjct: 818 QMAKEIRVMLRLFGIPYVDAPMEAEAQCAQLWMAGLVDGIITDDSDVFLFGGGRVFKNMF 877
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + EC+ +SDIE L L R L ++ +G+D+ + G+ +G ++ ++ F
Sbjct: 878 -NQNKYVECFLLSDIERELSLDRDKLCKLAYFLGSDY-VEGLPKVGPVLGMELMREF 932
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W +++P AR L+ L +KR+AVD S W+ Q + A++ ++ H+ L F
Sbjct: 1 MGVHG-LWPIIQPVARPIALETLGNKRMAVDSSIWLHQFQLAMRDKEGRALDNAHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
R I +G PVFV DG +K A R R A +L E +L
Sbjct: 59 LRRICKLLYYGIKPVFVFDGGAPVIKRIAVSERKRRKRGGADSLAKTAEKLL 110
>gi|261193829|ref|XP_002623320.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239588925|gb|EEQ71568.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239613756|gb|EEQ90743.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ER-3]
Length = 406
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R + A A+E E
Sbjct: 74 HLMGMFYRTLRIVEN-GIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTAE 132
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 133 DVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLARAGKVYAAASEDMD 192
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + GL + RK + + +L+G D+ L+ +
Sbjct: 193 TLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPK 251
Query: 222 IGLDTALQFVQN 233
+G +TAL+ +++
Sbjct: 252 VGPNTALKLIRD 263
>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
gi|166973697|sp|A2BMI0.1|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
Length = 350
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 111/244 (45%), Gaps = 35/244 (14%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAF 70
L L+ K VA+D + Q TAI++ + P HL F+RTINL + G
Sbjct: 19 LAHLKYKVVAIDAYNALYQFLTAIRQPDGTPLMDSKGRITSHLSGLFYRTINLM-EHGIK 77
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGI-------LVERNQTFLKCVQEC 123
V+V DG P +K L R + + + EE + Q + E
Sbjct: 78 IVYVFDGKPPEMKY---LEIERRKRVKSEAVKKYEEAVKKGDTKAARRYAQMAARLTDEM 134
Query: 124 VE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIR 177
VE LL+ G+P ++A E EA A + G A + D D+ LFG+ +V+ I
Sbjct: 135 VEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQDYDSLLFGSPRLVRNLAIT 194
Query: 178 PNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
K P E + + LG+ R+ L+A+ +LIG D++ +GV+GIG TAL
Sbjct: 195 GRRKLPRKDVYVEIKPELIELDKLLKALGITREQLVALGILIGTDYNPDGVKGIGPKTAL 254
Query: 229 QFVQ 232
+ V+
Sbjct: 255 KMVK 258
>gi|224050601|ref|XP_002192880.1| PREDICTED: flap endonuclease 1 [Taeniopygia guttata]
Length = 386
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 20/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGADVLQNEDGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E + + K + QEC +LL L
Sbjct: 88 KPPQLKSGELAKRTERRAEAEKHLQEAQEAGEEENIEKYSKRLVKVTPQHTQECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYVEAPGEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ I L L + + + +L+G D+ ++GIG A++ ++ E +
Sbjct: 208 HLNRILQDLQLTWEQFVDLCILLGCDY-CASIRGIGPKRAVELIREHKSIERIVQQLDTK 266
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 267 KYPLPENW 274
>gi|358341292|dbj|GAA49005.1| DNA excision repair protein ERCC-5 [Clonorchis sinensis]
Length = 1013
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 15/135 (11%)
Query: 115 TFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV- 173
T +CV+E LL+LFGMP + + EAEA C L G VD + DSD + FGA+ V
Sbjct: 601 TTQRCVEEAQNLLQLFGMPFIVSPEEAEAQCVALQQSGLVDLVASDDSDVWPFGARLVCR 660
Query: 174 ------------KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
K R + P + Y + D++ +GL +++ ++LL G+D+ GVQ
Sbjct: 661 HLFAGGAVDTKPKVTRKAPRVPSQ-YTLDDVQRTVGLNTMNILRLALLCGSDY-TPGVQN 718
Query: 222 IGLDTALQFVQNFSE 236
+G TA++ + F E
Sbjct: 719 VGPVTAVEILNEFGE 733
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 96/242 (39%), Gaps = 30/242 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV G W+LL+P R L+ L K VA+D++ W+ Q + PK +L + F R
Sbjct: 1 MGVPG-LWELLEPARRPIELEQLTGKTVAIDMNIWLHQAVKSRASTGGPKAYLTVLFRRL 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLK--SQARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
L FG PVFV DG LK + A R + D + E Q ++
Sbjct: 60 CKLI-YFGIRPVFVFDGDVPALKKATMAVRRRLRHNLADRAN----------EARQRIIR 108
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + V + G K A L+ G+ A D LFG P
Sbjct: 109 RLLKRVAQSAVHGSTSSPEKSNKTAEVELLHRLGHHPEAQQAKEDEALFGV--------P 160
Query: 179 N--TKEPFECYCISDIEAGL---GLKRKHLIAMSLLIGNDH-DLNGVQ--GIGLDTALQF 230
N + + + + AGL L R +L + L + DH DL+ + L L+
Sbjct: 161 NELSSDQLDAQGLLHERAGLEYDELARDYLDGVKLHVNADHLDLHSPSFCALPLQAQLRV 220
Query: 231 VQ 232
VQ
Sbjct: 221 VQ 222
>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
Length = 1031
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 82 LKSQARLARFYRSTIDASTLPVAEEGILVE-------------RNQTFLKCVQECVELLE 128
+K Q F +T+ S E VE ++ + ++E ELL
Sbjct: 721 IKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKDKRDSDEVTMDMIKEVQELLS 780
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
G+P + A EAEA CA+L VD IT DSD FLFG + K + + K E Y
Sbjct: 781 RLGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF-HEKNYVEFYD 839
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
I LGL RK++I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 840 AESILKLLGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEF 884
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD+ P AR L+ L DKR+AVD S WI Q A++ N+V H+ F
Sbjct: 1 MGVHS-FWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHI-TGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIRPVFVFDGGVPVLKRETIRQRKER 94
>gi|269859663|ref|XP_002649556.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
gi|317374899|sp|B7XHS8.1|FEN1_ENTBH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220067107|gb|EED44575.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
Length = 358
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 24/244 (9%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-------NSVPKPHLRLTFFRTINLFAKFGAFPV 72
L + ++A+D S I Q A++ H+ F+R+I G PV
Sbjct: 23 LKYYSGYKIAIDASMCIYQFLVAVRAEGQSLSWGDSTTSHISGIFYRSIRWIEN-GIIPV 81
Query: 73 FVVDGTPSPLKS---QARLARFYRSTIDASTLPVAEEG--ILVER----NQTFLKC-VQE 122
FV DG P K + R R R I+A E+ +LV + N K ++E
Sbjct: 82 FVFDGIPPEEKIHEFEKRTKR--RQDINAKLQDAIEQQDQVLVSKYDRMNVKMEKSHIEE 139
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NT 180
C + L L +P + A EAEA CA L +VDA T D D+ FG+ +++ +
Sbjct: 140 CQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDMDSLCFGSPLLLRNFNTALSQ 199
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEI 239
K P E Y + I GL + + + +L+G D+ ++G+G+ A ++++ + S D +
Sbjct: 200 KLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSAT-IRGVGMKRAFEYIKKYKSIDNL 258
Query: 240 LNIL 243
+ I+
Sbjct: 259 IGIV 262
>gi|402468038|gb|EJW03248.1| hypothetical protein EDEG_00228 [Edhazardia aedis USNM 41457]
Length = 362
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 23/253 (9%)
Query: 12 KPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINL 63
KP + + + +R+A+D S + Q A++ + HL TF+RTI +
Sbjct: 15 KPAIKNRDISYFTGQRIAIDASLSLYQFLIAVRSDGAGLTTDSGDTTSHLIGTFYRTIRI 74
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARL-ARFYRSTIDASTLPVAEEGILVERNQTF------ 116
G P+FV DG P LK L R + A +A E E+ + F
Sbjct: 75 VTS-GIKPLFVFDGLPPELKLSHELEKRKEKRDAAAKEYEMALETGDKEQIEKFDKRKVK 133
Query: 117 --LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
K V +C +LL+L +P + A EAEA A L +G VDA T D DA FGA +++
Sbjct: 134 VTKKHVDDCKKLLDLMKVPYVVAPSEAEAYAAYLCIKGVVDAVATEDMDALTFGAPILLR 193
Query: 175 CIRP--NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ N K P Y + +I L + I + +++G D+ + ++G G A + +
Sbjct: 194 NLNAAENKKLPIVEYNLKEILKELKINHNQFIDVCIMLGCDY-VKPLRGFGPKRAYEMI- 251
Query: 233 NFSEDEILNILHK 245
+I IL K
Sbjct: 252 -LKHKDIETILEK 263
>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
gi|259645974|sp|C5A639.1|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
gammatolerans EJ3]
Length = 339
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 29/241 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K+VA+D + Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKC-------VQE 122
P +V DG P K + R A E G + E + ++ +++
Sbjct: 75 PAYVFDGEPPAFKKKELEKRREAREEAEEKWHEALERGEIEEAKKYAMRATKLNETLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LL L G+PV++A E EA A + ++ V A + D D+ LFGA +V+ + +
Sbjct: 135 AKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAPRLVRNLTITGRR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ LG+ R+ LI +++L+G D++ G++GIG AL V
Sbjct: 195 KLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGIKGIGPKKALTIV 254
Query: 232 Q 232
+
Sbjct: 255 K 255
>gi|3047083|gb|AAC13596.1| similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana]
Length = 362
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILV 110
HL+ F RTI L G PV+V DG P LK Q LA+ Y DA+ L A E
Sbjct: 97 HLQGMFNRTIRLLEA-GIKPVYVFDGKPPELKRQ-ELAKRYSKRADATADLTGAIEAGNK 154
Query: 111 ERNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E + + K +C LL L G+PV++A EAEA CA L G V + D
Sbjct: 155 EDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDM 214
Query: 163 DAFLFGA-KCVVKCIRPNTKE-PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
D+ FGA K + + P++++ P + ++ I L L I + +L G D+ + ++
Sbjct: 215 DSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIR 273
Query: 221 GIGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYW 255
GIG TAL+ + Q+ S + IL L+K IP+ W
Sbjct: 274 GIGGQTALKLIRQHGSIETILENLNK-ERYQIPEEW 308
>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
Length = 333
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 25/210 (11%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE---GI 108
HL FFR I F + PVF+ DG P KS+ R R + + A E +
Sbjct: 58 HLSGIFFR-ITTFLENNIKPVFIFDGAPPEFKSETLEQRRERKAVAETAYRQAVEVGDTV 116
Query: 109 LVERNQTFLKCVQECV-----ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
R+ V E + ELL G+P + A E EA A + G V I+ D D
Sbjct: 117 SAFRHARAATRVDETIIAGTKELLGYMGIPCIDAMSEGEAQAAYMAMNGDVRYSISQDYD 176
Query: 164 AFLFGAKCVVKCIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
+ LFGA +V+ + + K E +SD+ G G+ R+ LI + +L+G D
Sbjct: 177 SLLFGAPRLVRNLTVSRKRKVRGRVITVNPEEILLSDLLDGKGITREELIEIGILVGTDF 236
Query: 215 DLNGVQGIGLDTAL------QFVQNFSEDE 238
+ +GV+G+G TAL +F + F E+E
Sbjct: 237 N-SGVKGVGAKTALKIVKSGKFYETFEENE 265
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + ELL+ FG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 729 MINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGDKIYKNMF- 787
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ K+ E Y D+ + L + LI ++LL+G+D+ G++GIG A++ + F
Sbjct: 788 DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDY-TEGIKGIGPVQAMEILAEF 842
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W ++ P AR L+ L K++A+D S WI Q A++ NS+P H+ + F
Sbjct: 1 MGVHS-LWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHI-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG P+FV DG LK Q
Sbjct: 59 FRRICKLLYFGILPIFVFDGGVPALKKQT 87
>gi|390364842|ref|XP_790336.3| PREDICTED: DNA repair protein complementing XP-G cells-like
[Strongylocentrotus purpuratus]
Length = 375
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
E+L+ FG+P +++ EAEA CA L+ + IT D D +LFG + V + K+P
Sbjct: 110 EMLQCFGIPYIESPQEAEAQCAFLDLTNQTEGTITDDGDIWLFGGRRVFRHFFSKKKDP- 168
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E + + DIE L L RK LI ++ L+G+D+ L G+QGIG A++ + F
Sbjct: 169 EYFRVGDIERHLLLDRKKLINLAYLVGSDYTL-GIQGIGSVGAMEILAEF 217
>gi|378727189|gb|EHY53648.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 768
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 92/215 (42%), Gaps = 32/215 (14%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D + W Q + + P LR F+R + L A PVFV DG PL
Sbjct: 31 RPLRLAIDAAIWNFQTQAGQGGKN---PALRTLFYRLVKLLA-LPIDPVFVYDGKNKPLT 86
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ + Y + I N+ + VQ F P A GEAEA
Sbjct: 87 KRGKTVSKYGTCIS---------------NEMSKRLVQ-------AFRFPSHTAPGEAEA 124
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYC--ISDIEAGLG 197
CA L G VDA ++ D DA +FG+ + K + K P ++ I++ G
Sbjct: 125 ECAMLQKHGLVDAVMSQDVDAIMFGSSLTLRDWSKEASKHNKSPTHVNVLDLARIKSLSG 184
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
L +I ++LL G D+D GV GIG A + +
Sbjct: 185 LDPDGMILVALLSGGDYDEAGVPGIGSTLACEIAR 219
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
E +T + VQE LL+ FG+P + A EAEA CA+L G VD +T DSD FLFG
Sbjct: 724 EVTETMINDVQE---LLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDSDCFLFGGD 780
Query: 171 CVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ K + + K+ E Y D+ + L + LI ++LL+G+D+ G++GIG A++
Sbjct: 781 KIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDY-TEGIKGIGPVQAMEI 838
Query: 231 VQNF 234
+ F
Sbjct: 839 LAEF 842
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W ++ P AR L+ L K++A+D S WI Q A++ NS+P H+ + F
Sbjct: 1 MGVHS-LWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSSHI-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG P+FV DG LK Q
Sbjct: 59 FRRICKLLYFGILPIFVFDGGVPALKKQT 87
>gi|326663749|ref|XP_003197653.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Danio rerio]
Length = 1022
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
QE ELL LFG+P + A EAEA CA L+ IT DSD +LFG + V + N
Sbjct: 660 QESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYRNFF-NQ 718
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y I D++ LGL R LI ++ L+G+D+ G+ G+G T ++ + F
Sbjct: 719 NKYVEHYQIVDMQNQLGLDRSKLINLAYLLGSDY-TEGIPGVGYVTGMEILNEF 771
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + + L K +AVD+S W+ Q ++ N+V HL LT
Sbjct: 1 MGVHG-LWKLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDRDGNAVQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R R E +L QTFL
Sbjct: 59 FHRLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSEKLL----QTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|389740276|gb|EIM81467.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 528
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 98/226 (43%), Gaps = 21/226 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKN---------SVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S I Q A+++ HL F+RTI + G P +V D
Sbjct: 29 RKVAIDASMSIYQFLIAVRQKDGEMLTNDAGETTSHLMGFFYRTIRIVEN-GIKPAYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LK+ RF + A+E E F + EC LL
Sbjct: 88 GKPPDLKAGVLAKRFEKREEAKEEGEEAKETGTAEDVDRFSRRTVRVTREHNAECQRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+PV+ A EAEA CA+L G V A + D D F A + + K P
Sbjct: 148 LMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFSAPTLFRHLTFSEAKKAPITE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+S GLG+K I + +L+G D+ L ++G+G TAL+ ++
Sbjct: 208 VTLSKALEGLGMKMPQFIDLCILLGCDY-LEPIKGVGPKTALKLIR 252
>gi|429848013|gb|ELA23547.1| flap structure-specific endonuclease [Colletotrichum
gloeosporioides Nara gc5]
Length = 542
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 95/213 (44%), Gaps = 38/213 (17%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D++ W Q + A P +R F+R + L P+FV DG P
Sbjct: 31 RPLRVAIDIAIWQFQTQAA---RGGTNPAIRTLFYRLVRLLG-LAIHPIFVFDGPHKPA- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
F R+ VA + +R L+ LFG PV A GEAEA
Sbjct: 86 -------FKRNKRSGKGGGVATA--MAKR-------------LIRLFGFPVHDAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVK-----CIRPNTKEPFECYCISDIE----A 194
CA L +G VDA ++ D D +FG ++ IR +K P + D++ A
Sbjct: 124 ECALLQQQGIVDAVLSEDVDTIMFGCTRTLRNWSSEGIR-GSKTPTHVN-LYDVDVLLSA 181
Query: 195 GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
G GL R+ ++ ++L+ G D+ GV G G+ A
Sbjct: 182 GTGLDREGMVLVALMSGGDYIPEGVPGCGVKLA 214
>gi|115402747|ref|XP_001217450.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
gi|114189296|gb|EAU30996.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
Length = 402
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 19/219 (8%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS R R T A+E E
Sbjct: 70 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRTARKTEATEAHEEAKETGTAE 128
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 129 DVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 188
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + +S GL + R I + +L+G D+ L +
Sbjct: 189 TLCFEAPILLRHLTFSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLGCDY-LEPIPK 247
Query: 222 IGLDTALQFVQNFSEDEILNILHKIGNGD-----IPQYW 255
+G +TAL+ +++ E ++ I N IP+ W
Sbjct: 248 VGPNTALKLIRDHGSLE--KVVEYIQNDPKKKYVIPEDW 284
>gi|119493310|ref|XP_001263845.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
gi|317374917|sp|A1D8A4.1|FEN1_NEOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119412005|gb|EAW21948.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
Length = 395
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 111/253 (43%), Gaps = 27/253 (10%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRTARKAEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ GLG+ RK I + +L+G D+ L + +G +TAL+ ++ E ++ I
Sbjct: 208 HLNRTLEGLGMDRKQFIDLCILLGCDY-LEPIPKVGPNTALKLIREHGSLE--KVVEAIE 264
Query: 248 NGD-----IPQYW 255
N IP+ W
Sbjct: 265 NDPKKKYVIPEDW 277
>gi|390938891|ref|YP_006402629.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
gi|390191998|gb|AFL67054.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
Length = 363
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 31/248 (12%)
Query: 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKF 67
E L L K + +D + Q AI++ + P HL F+RTIN+ +
Sbjct: 27 IEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNSGRITSHLSGLFYRTINI-VEA 85
Query: 68 GAFPVFVVDGTPSPLKS---------QARLARFYRSTIDASTLPVAEEGILVERNQTFLK 118
G PV+V DG P LK+ + A+ Y + + L +A ++ T +
Sbjct: 86 GIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTE-E 144
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V++ LL+ G+P ++A E EA A + +G A + D D+ LFG+ +V+ +
Sbjct: 145 MVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTI 204
Query: 179 NTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
+ + E + + LG+ ++LI + +L+G D++ +G +GIG A
Sbjct: 205 SGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKA 264
Query: 228 LQFVQNFS 235
LQ V+ +
Sbjct: 265 LQLVKAYG 272
>gi|150399374|ref|YP_001323141.1| flap endonuclease-1 [Methanococcus vannielii SB]
gi|150012077|gb|ABR54529.1| XPG I [Methanococcus vannielii SB]
Length = 324
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 152/356 (42%), Gaps = 52/356 (14%)
Query: 3 VGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKPH--------L 53
+G +F D++ P L LR K A+D I Q ++I+ K+ P +
Sbjct: 1 MGVQFGDII-PKKEI-SLKLLRTKSAAIDAMNVIYQFLSSIRLKDGSPLKNRSGEITSTY 58
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGIL--- 109
F++TI + P++V DG LK + + R R + L E+ L
Sbjct: 59 NGIFYKTIYMLEN-EITPIWVFDGKSHDLKEKTKEDRRKLRQNALENYLEAKEQDNLENM 117
Query: 110 --VERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
+ FL K ++ LLEL G+P + A E EA CA+L ++ D D+
Sbjct: 118 QKYAKRANFLDKKTIENSKRLLELMGVPYINAPSEGEAQCAELVKSKNASFVVSQDYDSI 177
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
L+GA+ VVK I + K E +S + L + LI +++LIG D++ G++GIG
Sbjct: 178 LYGAESVVKNITSSNK-SLELIELSKVLTELNVNLLELIDVAILIGTDYNPGGIKGIGPK 236
Query: 226 TALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGH 285
A + V+ G + +Y +I++ E DE P + + +
Sbjct: 237 KAFEVVK---------------KGQMEKYAFEIQNYSEIRKIFDE--PNVITDY-----E 274
Query: 286 PGTKRAHFKFSCEYCINDNN---EGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWW 338
G K E+ + +N+ E L P+ K + L NK K QK E+W+
Sbjct: 275 IGLKLPRKDELIEFLVEENDFSKERVL--PNIEKLDLLLGNK----KSQKSLESWF 324
>gi|326474338|gb|EGD98347.1| hypothetical protein TESG_05726 [Trichophyton tonsurans CBS 112818]
Length = 778
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 110/247 (44%), Gaps = 40/247 (16%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
R+AVD+S W+ Q + A + P LR FFR L + P+FV DG P +
Sbjct: 34 RLAVDISIWLFQVQAAQGGTN---PALRTLFFRLTRLIS-LPIQPIFVFDGPHRPDYKRG 89
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCA 146
RL V +N + ++ +L+ELF P A GEAEA CA
Sbjct: 90 RL---------------------VSKNAAAAQ-IELSRKLIELFSYPCHMAPGEAEAECA 127
Query: 147 QLNSEGYVDACITADSDAFLFGAKC-VVKCIRPNTKEPFECYCIS-------DIEAGLGL 198
+L G VDA ++ D DA +FG+K ++ + + K+ + D ++ + L
Sbjct: 128 KLQQAGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTL 187
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDI 258
K ++ ++LL G D+ GV G A++ + +++ I + +G
Sbjct: 188 DTKGMVLVALLSGGDYSPAGVALCGPKLAVEIARAGFGEDLFEITQDLLSGR------ST 241
Query: 259 KSTEEAV 265
K TEEA+
Sbjct: 242 KKTEEAL 248
>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
Length = 339
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 24/222 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILV 110
HL +RT N A+ G PV+V DG P LK + R R + +EG L
Sbjct: 57 HLSGLLYRTANFLAE-GIKPVYVFDGRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLE 115
Query: 111 E-----RNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + TFL V E +LL+ G+P ++A E EA A + +G A + D D
Sbjct: 116 EARSKAQQATFLTKNMVDEAKKLLDYMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFD 175
Query: 164 AFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGN 212
+ LFGA +V+ + K E + + LG+ R+ L+ + +L+G
Sbjct: 176 SLLFGAPNLVRNLAITGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVGT 235
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQY 254
D++ G++G+G TAL+ ++ + E I+ + G IP Y
Sbjct: 236 DYN-EGIKGVGPKTALKLIKKYGSLE--KIIQERGY-TIPHY 273
>gi|168066677|ref|XP_001785260.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374868|sp|A9U328.1|FEN12_PHYPA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|162663130|gb|EDQ49912.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 349
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE-EGILV 110
HL F RTI + + G PV+V DG P +K R R +L A+ EG
Sbjct: 64 HLIGMFNRTIRVL-EAGLKPVYVFDGKPPEMKGGELAKRLARREEAVESLATAKLEGNEA 122
Query: 111 ERNQTFLKCV-------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ + + V ++C +LL L G+PV++A EAEA CA L G V A + D D
Sbjct: 123 DMEKYSKRTVKVTKQHNEDCRKLLRLMGVPVVEAPSEAEAECASLCKTGKVYAVASEDMD 182
Query: 164 AFLFGAKCVVK-CIRPNTKE-PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
+ FG+ ++ + P +++ P + ++ + GL L + + +L G D+ ++ ++G
Sbjct: 183 SLTFGSTRFLRHLMEPVSRKLPVMEFDMNKVLEGLSLTMDQFVDLCILCGCDY-IDTIRG 241
Query: 222 IGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYW 255
IG TAL+ + Q+ S ++IL L+K IP W
Sbjct: 242 IGAQTALKLIRQHGSLEKILENLNK-DRYQIPDPW 275
>gi|326433004|gb|EGD78574.1| xeroderma pigmentosum group G complementing factor [Salpingoeca sp.
ATCC 50818]
Length = 1980
Score = 79.3 bits (194), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL LFG P + A EAE+ CAQL +G V IT DSD FLFG + V + + K+ +
Sbjct: 1178 LLRLFGCPYVIAPQEAESQCAQLEQQGLVSGVITDDSDVFLFGGRRVYRHVCSQKKD-MQ 1236
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
Y D+E GL R LI ++ L+G+D+ GV GIG TA++ + F
Sbjct: 1237 LYLADDLENLAGLDRSSLIDLAYLLGSDYT-PGVAGIGPVTAVEVISEF 1284
Score = 41.2 bits (95), Expect = 1.5, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTF 57
MGV G W LL+ R +D L + +AVD S W+ Q A++ + V H+
Sbjct: 1 MGVKG-LWQLLEVVGRPVQMDDLEGQVLAVDASIWLHQIVRAMRNDKGELVRNAHIHAML 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILV 110
R L PVFV DG +K Q R R T A +L ++ +L+
Sbjct: 60 ARICRLI-HHRIKPVFVFDGGAPLIKKQTIAERSKRQTEGAQSLRARQQQLLL 111
>gi|219125938|ref|XP_002183226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|317374908|sp|B7G7Y7.1|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 29/276 (10%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVPK-------------PHLRLTFFRTINLFAK 66
L L +++A+D S I Q A++ + H++ F RTI +
Sbjct: 23 LKSLHGRKIAIDASMAIYQFLIAVRSGGPNQQATMLTNAEGETTSHIQGMFNRTIRYMTE 82
Query: 67 FGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCV----- 120
G PVFV DG P +KS + R + + L VA EEG + E+++ + V
Sbjct: 83 -GIRPVFVFDGKPPDVKSHELIKRREKREKAQAALAVASEEGNVEEQDKQSKRLVRAGTK 141
Query: 121 --QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CI 176
++C +LL L G+PV+ A EAEA A L G V A T D DA F +V+
Sbjct: 142 ENEDCRKLLTLMGVPVVTAPCEAEAQAAALCKAGLVYATGTEDMDALTFATPILVRKLTF 201
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
+K + + + GL + + + +++G D+ + ++G+G TAL+ ++
Sbjct: 202 ANASKSMVQTMNYNKVIEGLAISHDQFVDLCIMLGCDY-CDTIRGVGPKTALKLIREHG- 259
Query: 237 DEILNILHKIGNGD--IPQYWGDIKSTEEAVSHSDE 270
I ++ I +P+ W + +A S D+
Sbjct: 260 -NIEKVIETIDRKKFVVPESWVPNEKKLDAQSDDDD 294
>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|74597180|sp|Q5B9L6.1|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 395
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRSARKHEATEAHEEAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
++ GLG+ R I + +L+G D+ L + +G +TAL+ +++
Sbjct: 208 HLNRALEGLGMDRNQFIDLCILLGCDY-LEPIPKVGPNTALKLIRD 252
>gi|327307022|ref|XP_003238202.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
gi|326458458|gb|EGD83911.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
Length = 768
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 34/231 (14%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
R+AVD+S W+ Q + A P LR FFR L + P+FV DG
Sbjct: 34 RLAVDISIWLFQVQAA---QGGANPALRTLFFRLTRLIS-LPIQPIFVFDGP-------- 81
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCA 146
+R P + G LV +N + ++ +L+ELF P A GEAEA CA
Sbjct: 82 -----HR--------PDYKRGRLVNKNAAAAQ-IELSRKLIELFSYPCHMAPGEAEAECA 127
Query: 147 QLNSEGYVDACITADSDAFLFGAKC-VVKCIRPNTKEPFECYCIS-------DIEAGLGL 198
+L G VDA ++ D DA +FG+K ++ + + K+ + D ++ + L
Sbjct: 128 KLQQAGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTL 187
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
+ +I ++LL G D+ GV G A++ + +++L I + +G
Sbjct: 188 DTRGMILVALLSGGDYSPAGVALCGPKLAVEIARAGFGEDLLEITQDLLSG 238
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++ HL F+RTI L + G PV++ DG
Sbjct: 29 RKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGMFYRTIRLVEQ-GIKPVYIFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVER----NQTFLKCVQECVE----LLEL 129
P LK R + L AEE E N+ +K +E E LL+L
Sbjct: 88 KPPNLKGGELAKRAEKRDEAQKLLQAAEEAGNAEDIEKFNRRLVKVTKEHAEEAKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA + G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYIDAPCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ GL L I + +++G D+ N ++G+G A++ ++
Sbjct: 208 HQDKVLEGLELSHDEFIDLCIMLGCDYT-NSIKGVGPKRAIELIKT 252
>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
Length = 339
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 24/222 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILV 110
HL +RT N A+ G PV+V DG P LK + R R + +EG L
Sbjct: 57 HLSGLLYRTANFLAE-GIKPVYVFDGRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLE 115
Query: 111 E-----RNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + TFL V E +LL+ G+P ++A E EA A + +G A + D D
Sbjct: 116 EARSKAQQATFLTKDMVDEAKKLLDYMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFD 175
Query: 164 AFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGN 212
+ LFGA +V+ + K E + + LG+ R+ L+ + +L+G
Sbjct: 176 SLLFGAPNLVRNLAITGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVGT 235
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQY 254
D++ G++G+G TAL+ ++ + E I+ + G IP Y
Sbjct: 236 DYN-EGIKGVGPKTALKLIKKYGSLE--KIIQERGY-TIPHY 273
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + ELL+ FG+P + A EAEA CA+L G VD +T DSD FLFG + K +
Sbjct: 731 MINDVQELLKRFGIPYITAPMEAEAQCAELFKIGLVDGIVTDDSDCFLFGGDKIYKNMF- 789
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ K+ E Y D+ + L + LI ++LL+G+D+ G++GIG A++ + F
Sbjct: 790 DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDY-TEGIKGIGPVQAMEILAEF 844
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV W ++ P AR L+ L K++A+D S WI Q A++ NS+P H+ + F
Sbjct: 1 MGVHS-LWKIIGPTARPVRLEALSRKKLAIDASIWIYQFLKAMRDKDGNSLPSSHI-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
FR I FG P+FV DG LK Q
Sbjct: 59 FRRICKLLYFGILPIFVFDGGVPVLKKQT 87
>gi|308504826|ref|XP_003114596.1| CRE-CRN-1 protein [Caenorhabditis remanei]
gi|308258778|gb|EFP02731.1| CRE-CRN-1 protein [Caenorhabditis remanei]
Length = 382
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 27/248 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRQDGAQLQSEDGETTSHLMGMFYRTIRMIDN-GIKPVYVFDG 87
Query: 78 TPSPLKS------QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ--ECVELLEL 129
P +KS R A ++ +A A+E ER + Q + +LL L
Sbjct: 88 KPPDMKSGELEKRSERRAEAEKALTEAKEKGDAKEAEKFERRLVKVTKQQNEDVKQLLGL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV--KCIRPNTKE-PFEC 186
G+PV++A EAEA CA L G V T D DA FG+ CV+ + P +K+ P +
Sbjct: 148 MGIPVVEAPCEAEAQCAHLVKAGKVFGTATEDMDALTFGS-CVLLRHLLAPESKKIPIKE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ ++ I + L + I + +L+G D+ ++G+G A++ + + NI +
Sbjct: 207 FHLARILEEMKLTEEEFIDLCILLGCDY-CGTIRGVGPKRAVELINQYK-----NIETIL 260
Query: 247 GNGDIPQY 254
N D+ +Y
Sbjct: 261 ENIDLTKY 268
>gi|226294510|gb|EEH49930.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb18]
Length = 528
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R + A A+E E
Sbjct: 196 HLMGMFYRTLRIVDN-GIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEIGTAE 254
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 255 DVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 314
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + GL + RK + + +L+G D+ L+ +
Sbjct: 315 TLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDY-LDPIPK 373
Query: 222 IGLDTALQFVQN 233
IG +TAL+ +++
Sbjct: 374 IGPNTALKLIRD 385
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF 116
F++TI + PV+V DG P LK + R R A+E ++ Q +
Sbjct: 62 FYKTIYMLEN-DITPVWVFDGKPPKLKEKTREERRKMREKAKEEFTKAKEMENIDEMQKY 120
Query: 117 LK--------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
K V+ +LL+L G+P + A E E + + +G V I+ D DA L+G
Sbjct: 121 AKRMNFLTKDIVENSKKLLDLMGVPYVNAPAEGEGQASYMAKKGDVFCVISQDYDALLYG 180
Query: 169 AKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
A +V+ + TKE E + ++ LG+ LI M++LIG D++ GV+GIG AL
Sbjct: 181 APRIVRNLTA-TKEELELIELENVLNELGISHDDLIDMAILIGTDYNPKGVKGIGPKKAL 239
Query: 229 QFVQN 233
+ V++
Sbjct: 240 EIVKS 244
>gi|307176270|gb|EFN65901.1| DNA-repair protein complementing XP-G cells [Camponotus floridanus]
Length = 1193
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P + A EAEA CA L + IT DSD +LFG + V K N +
Sbjct: 825 EAQELLRLFGIPYIVAPMEAEAQCAYLEQIELTNGTITDDSDIWLFGGQYVYKNFFNNNR 884
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILN 241
+ + DI+ L R LI ++LL+G+D+ GV GIG TAL+ + F E N
Sbjct: 885 RVLQFHAY-DIQHHFKLSRNQLIQLALLVGSDY-TTGVAGIGPVTALEILAAFPA-EGDN 941
Query: 242 ILH 244
ILH
Sbjct: 942 ILH 944
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVPKP--HLRLTF 57
MGV G W LL+ + L+ L K +A+D+S WI Q + ++ PKP HL F
Sbjct: 1 MGVHG-LWKLLEASGKPVPLESLEGKVLAIDISIWIYQVLQGYQDRHGTPKPNAHLLGLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS 99
R L + PVFV DG LK R + +I S
Sbjct: 60 TRICKLLY-YKIKPVFVFDGGVPMLKKNTIALRRKQKSIATS 100
>gi|396081098|gb|AFN82717.1| flap endonuclease-1 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 114/253 (45%), Gaps = 22/253 (8%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNS-------VPKPHLRLTFFRTINLFAKFGAFPV 72
L + KRVA+D S I Q A++ + HL F+RTI + + G PV
Sbjct: 23 LAYYSSKRVAIDASMSIYQFLIAVRSDGSTLGNGDTTTSHLVGLFYRTIRM-VELGITPV 81
Query: 73 FVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGI-----LVERNQTFLKC--VQECV 124
+V DG P +K + R R+T D +E G + ++ +T + V+EC
Sbjct: 82 YVFDGVPPEVKMKELGKRNERRATADKEYKDASEAGDKRLMEMYDKRKTKVTGIHVEECK 141
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKE 182
LL L G+P A EAEA CA L + V T D D+ FG+ V++ + K
Sbjct: 142 RLLGLMGIPFETAPSEAEAYCALLCKKRAVYGVATEDMDSLTFGSPVVLRNFSGTRSKKL 201
Query: 183 PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNI 242
P Y + + L L + I + +L+G D+ + ++GIG AL ++ I I
Sbjct: 202 PVVEYNLRQLLEDLSLDQDEFIDLCILLGCDY-CDTLKGIGPKKALGLIKKHR--SIERI 258
Query: 243 LHKIGNGDIPQYW 255
L + N + P W
Sbjct: 259 LQE-ENLETPDEW 270
>gi|195454489|ref|XP_002074261.1| GK18419 [Drosophila willistoni]
gi|194170346|gb|EDW85247.1| GK18419 [Drosophila willistoni]
Length = 1247
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ + IT DSD +LFG + V K K
Sbjct: 873 DCQELLRLFGIPYIVAPMEAEAQCAFLNATELTNGTITDDSDIWLFGGRTVYKNFFAQNK 932
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 933 HVLE-FRSEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 984
>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
Length = 399
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LK R R A+E E
Sbjct: 67 HLMGMFYRTLRIVDN-GIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKETGTAE 125
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 126 DMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 185
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + + GLG+ RK I + +L+G D+ L +
Sbjct: 186 TLCFEAPILLRHLTFSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLGCDY-LEPIPK 244
Query: 222 IGLDTALQFVQ 232
+G +TAL+ ++
Sbjct: 245 VGPNTALKLIR 255
>gi|358054307|dbj|GAA99233.1| hypothetical protein E5Q_05927 [Mixia osmundae IAM 14324]
Length = 389
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 24/264 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VAVD S I Q A+++ + HL F+RTI + G P +V D
Sbjct: 29 RKVAVDASMSIYQFLIAVRQQDGQQLMNESGETTSHLMGFFYRTIRMVEN-GIKPAYVFD 87
Query: 77 GTPSPLKSQARLARFY-RSTIDASTLPVAEEGILVERNQTFLKCV-------QECVELLE 128
G P LKS RF R+ E G + E ++ + V +EC LL+
Sbjct: 88 GKPPDLKSGVLKKRFAKRAEATEEGEDAKETGTVEEIDKLSRRTVRVTKEHNEECQRLLK 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+P + A EAEA CA+L G V + D D F + +++ K P +
Sbjct: 148 LMGIPFIIAPSEAEAQCAELCRGGLVYGTGSEDMDTLTFSSPIILRHLTFSEQRKLPIDV 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHK 245
+S++ G+ L I M +L G D+ ++ + IG TAL+ +++ + D ++ L
Sbjct: 208 IELSEVLKGMELTMDEFIDMCILSGCDY-VDPLPKIGAKTALKLIKDHGDLDAVVEALKD 266
Query: 246 IGNGDIPQYWGDIKSTEEAVSHSD 269
P+ W + E H D
Sbjct: 267 TPRA-APEDW-PYREARELFKHPD 288
>gi|365989632|ref|XP_003671646.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
gi|343770419|emb|CCD26403.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
Length = 384
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 32/296 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ + HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGGQLTNDAGETTSHLMGMFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQ---ARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQE----CVELLEL 129
G P LKS R+AR R+ + ++ +++ + +K +E +LLEL
Sbjct: 88 GKPPVLKSHELDKRIAR--RAETEKKFAEATDQAEKIKQERRLVKVSKEHNDEAKKLLEL 145
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A GEAEA CA+L +G V A + D D + +++ KEP +
Sbjct: 146 MGIPYVNAPGEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIQEI 205
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+ GL L + I + +++G D+ N ++GIG TA + ++ S ++I+ +
Sbjct: 206 NTEQVLQGLELTLEQFIDLGIMLGCDYCEN-IRGIGPVTAFKLIKEHGSLEKIIEFIESD 264
Query: 247 GNGD----IPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
N + +P+ W ++ E V+ +I + + P + A +F C+
Sbjct: 265 ENTNKKWKVPENWPYKEARELFVTPD-----IIDGNQITLKWEPPKEDALIEFLCK 315
>gi|315230863|ref|YP_004071299.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
gi|315183891|gb|ADT84076.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
Length = 342
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 120/250 (48%), Gaps = 34/250 (13%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
++ L +++A+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 IENLNGRKIAIDALNAIYQFLSIIRQRDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQ---------ARLARFYRSTIDASTLPVAEEGILVER-NQTFLKCV 120
P +V DG P K + ++ + L A++ +R ++ + +
Sbjct: 75 PAYVFDGKPPEFKKKELEKRAEAREEAEEKWQEALARGDLEEAKK--YAQRASRVNEQLI 132
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++ +LLEL G+P ++A E EA A + S+G V A + D D+ LFGA +V+ +
Sbjct: 133 EDAKKLLELMGIPWVQAPSEGEAQAAYMASKGKVWASASQDYDSLLFGAPRLVRNLTITG 192
Query: 181 KEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+ E + ++ L + R+ LI +++L+G D++ G++G+G AL+
Sbjct: 193 RRKLPGKDVYVEVKPELIVLEEVLKELKIDREKLIELAILVGTDYNPGGIKGVGPKKALE 252
Query: 230 FVQNFSEDEI 239
V+ +S+D +
Sbjct: 253 IVR-YSKDPL 261
>gi|357132761|ref|XP_003567997.1| PREDICTED: flap endonuclease 1-A-like [Brachypodium distachyon]
Length = 380
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 116/250 (46%), Gaps = 23/250 (9%)
Query: 26 KRVAVDLSYWIVQ---------HETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
+R+AVD S I Q ET + HL+ F RTI L + G PV+V D
Sbjct: 29 RRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLL-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P +K Q R+ + L A E + + F K +C LL
Sbjct: 88 GKPPDMKKQELAKRYAKREDATEELTKAVETGDTDAIERFSKRTVKVTKQHNDDCKRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFEC 186
L G+PV++A EAEA CA L + V A + D D+ FGA V+ + P++++ P
Sbjct: 148 LMGVPVVEAPCEAEAQCAALCIKDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPIME 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHK 245
+ ++ I L I + +L G D+ + ++GIG TAL+ + Q+ S + IL ++K
Sbjct: 208 FEVAKILEELEFTMDQFIDLCILCGCDY-CDSIKGIGGLTALKLIRQHGSIEGILENINK 266
Query: 246 IGNGDIPQYW 255
IP+ W
Sbjct: 267 -DKYQIPEDW 275
>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
Length = 349
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 23/205 (11%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST--LPVAEEGIL 109
HL +RTIN F + +PV+V DG P P + +AR + +A + + EEG
Sbjct: 61 HLSGLLYRTIN-FLENRIWPVYVFDGKP-PEEKTLEIARRRKVREEAMDKWVKLLEEGKR 118
Query: 110 VE-----RNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E + FL V++ +LL L G+PV++A + EA A + EG A + D
Sbjct: 119 EEARKYAQRALFLTDDMVEDAKKLLRLMGIPVVQAMADGEAQAAVIAREGKAWAAGSQDY 178
Query: 163 DAFLFGAKCVVKCIR-------PNTKEPFECYC----ISDIEAGLGLK-RKHLIAMSLLI 210
D+ LFGA +V+ + PN E E ++++ L LK R LI +++L+
Sbjct: 179 DSLLFGAPRLVRNLAITGRRKLPNKDEYIEIKPEIIELNEVLKALKLKDRTQLIDLAILL 238
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFS 235
G D + +GV GIG AL+ +Q F
Sbjct: 239 GTDLNPDGVPGIGPQRALRLIQEFG 263
>gi|310796699|gb|EFQ32160.1| hypothetical protein GLRG_07304 [Glomerella graminicola M1.001]
Length = 869
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 36/212 (16%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP-L 82
R R+A+D++ W Q + A + P +R F+R + L + G P+FV DG P
Sbjct: 65 RPLRIAIDIAIWQFQTQAARGGTN---PAIRTLFYRLLRLLS-LGIQPIFVFDGPHKPAF 120
Query: 83 KSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAE 142
K R R +G+ ++ LFG P+ A GEAE
Sbjct: 121 KRNKRSGR--------------GDGV----------ATAMAKRVIRLFGFPLHDAPGEAE 156
Query: 143 ALCAQLNSEGYVDACITADSDAFLFGAKCVVK------CIRPNTKEPFECYCISD-IEAG 195
A CA L G VDA ++ D D +FG ++ T Y + + + AG
Sbjct: 157 AECALLQQRGIVDAVLSEDVDTIMFGCTRTLRNWTAEGTRGAKTPTHVSLYDVDELLSAG 216
Query: 196 LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
GL R+ ++ ++L+ G D+ GV G G+ A
Sbjct: 217 TGLDREGMVLVALMSGGDYIPEGVPGCGVKLA 248
>gi|302677424|ref|XP_003028395.1| hypothetical protein SCHCODRAFT_83281 [Schizophyllum commune H4-8]
gi|300102083|gb|EFI93492.1| hypothetical protein SCHCODRAFT_83281 [Schizophyllum commune H4-8]
Length = 911
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 107/262 (40%), Gaps = 59/262 (22%)
Query: 1 MGVGGKFWDLLKPYAR---------FEGLD----FLRDKRVAVDLSYWIVQHETAIKKNS 47
MG+ G WD+LKP A EG + LR R+ +D S W E + +
Sbjct: 1 MGIAG-LWDVLKPAAVKRSMLELPVSEGFEKNPKNLRGFRIGIDASIWFFHAEYGKEGEN 59
Query: 48 VPKPHLRLTFFRTINLF-AKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE 106
P LR FFR L A + P+FV DG P S R R ++
Sbjct: 60 ---PELRTLFFRCATLMHAPW--LPLFVFDGPKRP--SWKRGKRISKN------------ 100
Query: 107 GILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFL 166
N + ++ VE FG A GEAEA A LN G +D ++ DSD FL
Sbjct: 101 ------NHALINGMKGIVEA---FGYEWRMAPGEAEAELAYLNRIGIIDGVLSDDSDNFL 151
Query: 167 FGAKCVVK----CIRPNTKEPF------------ECYCISDIEAGLGLKRKHLIAMSLLI 210
FGA V++ + N +P Y ++DI + L L R LI + L+
Sbjct: 152 FGALTVIRNPSNNLSANRAKPVLNSEGRDDKQHTMVYRLADITSQLELTRGGLILIGLMA 211
Query: 211 GNDHDLNGVQGIGLDTALQFVQ 232
G D++ G+ G+ A +
Sbjct: 212 GGDYEQAGLPDCGIKVATGLAR 233
>gi|398398872|ref|XP_003852893.1| hypothetical protein MYCGRDRAFT_40040, partial [Zymoseptoria
tritici IPO323]
gi|339472775|gb|EGP87869.1| hypothetical protein MYCGRDRAFT_40040 [Zymoseptoria tritici IPO323]
Length = 517
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D+S W+ Q + A K S P LR ++R + L P+FV DG P
Sbjct: 26 RPFRLAIDISIWLFQIQ-AGKGGS--NPALRTFYYRLLRLLTH-NIHPLFVFDGPNKPT- 80
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
F R+ V G+ V FL +LL+ FG P A GEAEA
Sbjct: 81 -------FKRNK------KVGGPGVRVASVPEFL-----AKQLLKQFGFPWHVAPGEAEA 122
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEP--FECYCISDIEAGLGLK 199
CA L EG VDA ++ D D +FG+ +K + K P Y + A GL
Sbjct: 123 ECALLQREGIVDAVLSEDVDTLMFGSGVTLKSWTAESSQKTPTHVTVYRAEETTARSGLD 182
Query: 200 RKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
+ +I ++L+ G D+ + G+ G G A
Sbjct: 183 TQGMILVALMSGGDYIVEGIPGCGPKVA 210
>gi|302665075|ref|XP_003024151.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
gi|291188195|gb|EFE43540.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
Length = 768
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 34/231 (14%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
R+AVD+S W+ Q + A P LR FFR L + P+FV DG P +
Sbjct: 34 RLAVDISIWLFQVQAA---QGGANPALRTLFFRLTRLIS-LPIQPIFVFDGPHRPDYKRG 89
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCA 146
RL V +N + ++ +L+ELF P A GEAEA CA
Sbjct: 90 RL---------------------VSKNAAAAQ-IELSRKLIELFSYPCHMAPGEAEAECA 127
Query: 147 QLNSEGYVDACITADSDAFLFGAKC-VVKCIRPNTKEPFECYCIS-------DIEAGLGL 198
+L G VDA ++ D DA +FG+K ++ + + K+ + D ++ + L
Sbjct: 128 KLQQAGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTL 187
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
+ +I ++LL G D+ GV G A++ + +++L I + +G
Sbjct: 188 DTRGMILVALLSGGDYSPAGVALCGPKLAVEIARAGFGEDLLEITQDLLSG 238
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++ HL F+RTI L + G PV+V DG
Sbjct: 29 RKIAIDASMCLYQFLIAVRSEGAQLTSVDGETTSHLMGMFYRTIRLVEQ-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVER----NQTFLKCVQE----CVELLEL 129
P LK R + L AEE E N+ +K +E +LL+L
Sbjct: 88 KPPNLKGGELAKRAEKRDEAQKLLQAAEEAGNAEDIEKFNRRLVKVTKEHADEAKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA + G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYIDAPCEAEAQCAAMVKAGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ GL L I + +++G D+ N ++G+G A++ ++
Sbjct: 208 HQDKVLEGLELSHDEFIDLCIMLGCDY-TNSIKGVGPKRAIELIKT 252
>gi|432852332|ref|XP_004067195.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oryzias latipes]
Length = 1078
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P L A EAEA CA L+ IT DSD +LFG + V K K
Sbjct: 692 ESQELLRLFGVPFLVAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKNFFSQNK 751
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y SD++ LGL R +I ++ L+G+D+ GV G+G T ++ + F
Sbjct: 752 Y-VEHYQYSDLQNQLGLDRAKMINLAYLLGSDY-AEGVPGVGYVTGMEILNEF 802
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + + L K +AVD+S W+ Q ++ NSV HL LT
Sbjct: 1 MGVHG-LWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
F I F PVFV DG LK Q R R
Sbjct: 59 FHRICKLLFFRIRPVFVFDGDAPLLKKQTLAQRRQR 94
>gi|223477291|ref|YP_002581507.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
gi|214032517|gb|EEB73347.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
Length = 339
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 29/241 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K+VA+D + Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LERLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKC-------VQE 122
P +V DG P K + R A E G + E + ++ +++
Sbjct: 75 PAYVFDGEPPAFKRRELEKRREAREEAEEKWHEALERGDIEEAKKYAMRATKLNETLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LL L G+PV++A E EA A + S+ V A + D D+ LFGA +V+ + +
Sbjct: 135 AKKLLGLMGVPVVQAPSEGEAQAAYMASKKKVYASASQDYDSLLFGAPRLVRNLTITGRR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ LG+ R+ LI +++L+G D++ G++GIG AL V
Sbjct: 195 KLPGKNVYVEVKPELIILEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKALTIV 254
Query: 232 Q 232
+
Sbjct: 255 K 255
>gi|317374875|sp|C3KJE6.1|FEN1_ANOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229367576|gb|ACQ58768.1| Flap endonuclease 1-A [Anoplopoma fimbria]
Length = 380
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S + Q A++++ HL F+RTI + + G PV+V DG
Sbjct: 29 RKIAIDASMCLYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRML-EHGIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R + L A+E E F K + EC +LL L
Sbjct: 88 KPPQLKSAELEKRGEKRAEAEKMLAQAQELGEQENIDKFSKRLVKVTKQHNDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P +
Sbjct: 148 MGVPYIEAPCEAEATCAALVKAGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEL 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
S I +GL + I + + +G D+ ++GIG A+ + Q+ S +EIL
Sbjct: 208 HYSRILQDIGLTNEQFIDLCIPLGCDY-CGTIKGIGPKRAIDLIKQHGSIEEIL 260
>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
gi|317374877|sp|C3ZBT0.1|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
Length = 380
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 108/234 (46%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQDGNMLTNDAGEATSHLMGMFYRTIRMVDN-GIKPVYVFDG 87
Query: 78 TPSPLKS---QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ-----ECVELLEL 129
P +KS R R + A E V + Q L V EC +LL L
Sbjct: 88 KPPNMKSGELAKRAERREEAQKALEKAEEAGEAEDVNKFQKRLVKVTKEHNAECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA+L +G V A T D D FG +++ K P + Y
Sbjct: 148 MGIPYVDAPCEAEAQCAELAKKGKVYAAGTEDMDVLTFGTNIMLRHLTFSEARKMPIKEY 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEIL 240
+ A L L + I + +L+G D+ + ++GIG A++ ++ + S +EIL
Sbjct: 208 YYDRLLAELDLTQDQFIDLCILLGCDY-CDSIRGIGPKRAIELIRQYKSIEEIL 260
>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
Length = 951
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
K E LL+LFG+P + A EAEA CA L G + +T DSD +LFGA V K
Sbjct: 662 KITSEIKGLLKLFGIPYITAPMEAEAQCAFLEKIGRTEGTVTDDSDVWLFGANVVYKDFF 721
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SE 236
N K + I DI+ L R I ++ L+G+D+ NG+ GIG +A++ + F S+
Sbjct: 722 DNQKYVKQFKSI-DIKQQFALSRNSFIQLAFLVGSDY-TNGIDGIGPVSAIEILSFFESK 779
Query: 237 DEILNILHKI 246
+ +NI K+
Sbjct: 780 TKNMNIEEKL 789
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 112/248 (45%), Gaps = 20/248 (8%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAF 70
+ + ++VA+D S + Q A+++ + HL F+RT+ + G
Sbjct: 23 IKYFHGRKVAIDASMSLYQFLIAVRQQDGVQLAGEDGETTSHLMGMFYRTLRMI-DHGIK 81
Query: 71 PVFVVDGTPSPLKS-QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV----QECVE 125
P +V DG+P LK + + R +A E+ +++ + +K + +E +
Sbjct: 82 PCYVFDGSPPELKKYELDKRKVRREDTEAKLKEATEQAEIIKHERRLVKVLPWHNEEAQK 141
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEP 183
LL L G+P + A EAEA CA+L G V A + D D + +++ K P
Sbjct: 142 LLSLMGIPYVVAPAEAEAQCAELAKSGKVFAAASEDMDTLCYQTPVLLRHLTFSEARKLP 201
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
+ + I L L + I + +++G D+ G++G+G AL+ ++ E I+
Sbjct: 202 IQEFDTDVIYNTLDLTQTQFIDLGIILGCDY-CEGIKGVGPVNALKLIKEHGSLE--AIV 258
Query: 244 HKIGNGDI 251
K NGDI
Sbjct: 259 EKFENGDI 266
>gi|118386483|ref|XP_001026360.1| XPG N-terminal domain containing protein [Tetrahymena thermophila]
gi|89308127|gb|EAS06115.1| XPG N-terminal domain containing protein [Tetrahymena thermophila
SB210]
Length = 1113
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
+T Q+ +LL LFG+P ++A EAEA CA L VD IT DSD FLFG K +
Sbjct: 749 ETIQDKFQQVRQLLLLFGVPWVEAPSEAEAQCAFLEQIKLVDGIITDDSDVFLFGGKNIY 808
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
+ + + IE +G+ R LI M+L +G+D+ L G++G+G+ A++
Sbjct: 809 RGLFGKEADYVRYINGESIEKEMGVNRDKLIYMALFLGSDYTL-GIKGVGIVNAMEI 864
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHE---TAIKKNSVPKP-HLRLT 56
MGV G W LL P R ++ L +R+A+D+S W+++ + + NS K HL
Sbjct: 1 MGVQG-LWTLLSPAGRKLKVEALEGQRLAIDVSIWVIRMLYGFASRRMNSEFKNIHLVGI 59
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLK 83
F R L + G PVFV DG LK
Sbjct: 60 FKRLCRLLS-LGIKPVFVFDGKAPELK 85
>gi|343429683|emb|CBQ73255.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 846
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 102/256 (39%), Gaps = 72/256 (28%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPL 82
LR R+ +D S W+ A + + P LRL F+R L + P+FV DG
Sbjct: 34 LRGLRLGIDASLWLFH---AQQSSGGANPSLRLLFYRLAKLLS-LPVLPLFVFDG----- 84
Query: 83 KSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAE 142
S+ P + G V+ Q ++ Q +L+E FG +A GEAE
Sbjct: 85 ----------------SSRPTWKRGKQVKGRQHAIE--QPFTQLIEAFGYQWHRAPGEAE 126
Query: 143 ALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN----------------------- 179
A A LN G+VDA +T DSDA LFG +++ N
Sbjct: 127 AELAYLNQAGFVDAVLTDDSDALLFGTHVLIRNWGKNLSGTKALSRTTSTSSDVFEDAPH 186
Query: 180 -TKEP-------------------FECYCISDIE--AGLGLKRKHLIAMSLLIGNDHDLN 217
T++P Y SD+ + LG+ R LI ++L+ G D+D
Sbjct: 187 STQDPAAAASALRLQLSGSDRDHLITLYKASDLSSMSTLGIDRDGLILIALMSGGDYDTT 246
Query: 218 GVQGIGLDTALQFVQN 233
G+ G+ AL +
Sbjct: 247 GLLQCGVKIALALARG 262
>gi|389741790|gb|EIM82978.1| hypothetical protein STEHIDRAFT_171105 [Stereum hirsutum FP-91666
SS1]
Length = 952
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 116/283 (40%), Gaps = 62/283 (21%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFL------------RDKRVAVDLSYWIVQHETAIKKNSV 48
MGV G WD++ P R + + R R+ +D S W H + KK
Sbjct: 1 MGVPG-LWDVVHPAGRTRSMTQVATEAFVENRGGKRGYRIGIDASIWY-HHASFSKKGE- 57
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP-LKSQARLARFYRSTIDASTLPVAEEG 107
P LR FF+ L + P+FV DG P +K +R+ + + A
Sbjct: 58 -SPELRFLFFKLCRL-TRLPLIPLFVFDGCERPKVKRGSRMGKAGSHALTAG-------- 107
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
F K LLELFGM A GEAEA A LN +G +DA I+ D DA +F
Sbjct: 108 --------FKK-------LLELFGMEWRMALGEAEAELAWLNRQGVIDAIISDDVDAIVF 152
Query: 168 GAKCVVK----CIRPNTKEP------------FECYCISDIE--AGLGLKRKHLIAMSLL 209
GA +K + N +P Y DI+ + L R L+ ++LL
Sbjct: 153 GAVNTMKNSGLLLSGNKSKPALDSNGKRSASHVWSYNADDIQRNPNVDLSRAGLVLIALL 212
Query: 210 IGNDHDLNGVQGIGLDTALQFVQ-NFSEDEILNILHKIGNGDI 251
G D+ GV IG A + F ED ++ I + G DI
Sbjct: 213 SGGDYS-GGVSKIGPTVAHGLARCGFGED-LMRIYEQRGIQDI 253
>gi|399217224|emb|CCF73911.1| unnamed protein product [Babesia microti strain RI]
Length = 895
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFE 185
LL+LF +P++ A EAEA CAQLN E V I+ DSD +FGA VVK N + E
Sbjct: 616 LLKLFKIPIIFAPSEAEAQCAQLNIEQSVYGVISDDSDTLVFGAIRVVKNFF-NKQRNLE 674
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
Y +I+ LGL R+ L ++LL G D+ +GV+GIG+ AL+ ++ +
Sbjct: 675 LYQSQNIKQTLGLTREKLALIALLCGCDY-TSGVKGIGIVNALEIIEAY 722
>gi|5689765|emb|CAB52135.1| Nucleotide excision repair protein [Drosophila melanogaster]
Length = 378
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 4 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 63
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 64 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 115
>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
gi|28380020|sp|Q97B98.1|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
Length = 335
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA----RLARFYRSTIDASTLPVAEEG 107
HL F+RT+NL G P+FV DG PSPLK++ +LA+ + EE
Sbjct: 57 HLYGIFYRTVNLVEN-GIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRGEEN 115
Query: 108 I---LVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ N + V + ELL G+P + A E EA + + + D I+ D D
Sbjct: 116 LKQYYSRINYITPQIVNDTKELLTYMGIPYVDAPSEGEAQASYMTRKD-ADGVISQDYDC 174
Query: 165 FLFGAKCVV---------KCIRPNTKEPF--ECYCISDIEAGLGLKRKHLIAMSLLIGND 213
LFGAK ++ K R N E + ++ G+ + LI + +L+G D
Sbjct: 175 LLFGAKKILRNFAIYGRRKVPRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVGTD 234
Query: 214 HDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ G++GIG AL ++ E I +L+KIG
Sbjct: 235 FN-EGIKGIGAKKALALIK--KEGNIKAVLNKIG 265
>gi|170584794|ref|XP_001897178.1| XPG N-terminal domain containing protein [Brugia malayi]
gi|158595426|gb|EDP33981.1| XPG N-terminal domain containing protein [Brugia malayi]
Length = 479
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 107/242 (44%), Gaps = 38/242 (15%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI--VQHETAIKKNSVPKPHLRLTFF 58
MGV W+ ++ + + + LR+KR+A+D W+ V + ++ KP+L TF+
Sbjct: 1 MGVTS-MWEYVQKFVQPVNISVLRNKRIAIDGHTWLCEVLRGSVAHCSTTRKPYLS-TFY 58
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTID---ASTLPVAEEGI---LVER 112
+ G P+ V DG + R+ ID +S V + G E
Sbjct: 59 TRCRSLLEEGVEPIVVFDG----------IDEGERTNIDYGISSMRKVRKRGSKYWTSEL 108
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
Q + V+E LL G+ +++K E EA CAQL G VD F FG K
Sbjct: 109 KQEMVPKVEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVD---------FGFGGKIQ 159
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + E C+S R LIAM+++IG D+ G+ G+GL TAL+ V
Sbjct: 160 NNILHLSMDYLDETLCLS---------RSCLIAMTIMIGCDYAQKGIPGVGLVTALEIVS 210
Query: 233 NF 234
F
Sbjct: 211 EF 212
>gi|296242726|ref|YP_003650213.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
gi|296095310|gb|ADG91261.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
Length = 353
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 35/269 (13%)
Query: 1 MGVGGKFWDLLKPYARF--EGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP-------- 49
MGV K DL+ A+ E + L+ K +A+D + Q AI++ + P
Sbjct: 1 MGVNLK--DLIPDDAKIVIENMRVLKGKVIAIDAYNALYQFLAAIRQPDGTPLMDSQGRI 58
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---------QARLARFYRSTIDAST 100
HL F+RTINL + G V+V DG P LK+ + AR Y + ++A
Sbjct: 59 TSHLSGLFYRTINLVEE-GLKTVYVFDGKPPELKARELERRRALKEESARKYEAAVEAGD 117
Query: 101 LPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
L A ++ T + V+E LL+ G+P ++A E EA A L +G A +
Sbjct: 118 LEAARRYAMMASKLTD-EMVKEAKRLLDALGVPWVQAPAEGEAQAAYLAKKGDAYASASQ 176
Query: 161 DSDAFLFGAKCVVKCIR-------PNTKEPFECYC----ISDIEAGLGLKRKHLIAMSLL 209
D D+ LFG+ +++ + P +E E ++ + L L ++LI + +L
Sbjct: 177 DYDSLLFGSPRLIRNLTISGRRKLPRREEYVEVKPEMIELNTLLLKLSLTLENLIDVGIL 236
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+G D++ G +GIG+ A Q V+ + E
Sbjct: 237 VGTDYNPEGFEGIGVKKAYQLVKTYGSIE 265
>gi|409075870|gb|EKM76246.1| hypothetical protein AGABI1DRAFT_9336, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 528
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 113/288 (39%), Gaps = 74/288 (25%)
Query: 1 MGVGGKFWDLLKPYARFEGL-------------DFLRDKRVAVDLSYWIVQHETAIKKNS 47
MGV G WD+LKP A+ L LR R+ +D S W E + +
Sbjct: 1 MGVAG-LWDVLKPAAKTRSLTELAVKEGFQTNPKGLRGYRIGIDASIWFFHAEYGKEGEN 59
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP-LKSQARLARFYRSTIDASTLPVAEE 106
P LR FFR L K P+FV DG P K R+
Sbjct: 60 ---PVLRTLFFRCATL-TKAPFLPLFVFDGPKRPDFKRGKRI------------------ 97
Query: 107 GILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFL 166
N++ K + ++E FG A GEAEA A LN G +D ++ D D FL
Sbjct: 98 ------NKSTNKLITGMKTIVEAFGFEWRTAPGEAEAELAYLNRIGVIDGILSDDVDNFL 151
Query: 167 FGAKCVVK----CIRPNTKEPF------------ECYCISDIE--AGLGLKRKHLIAMSL 208
FGA V++ + N P + + DI+ + L R LI + L
Sbjct: 152 FGALTVIRNQSNNLSGNKSNPVVNSEGKDDKNHTRVFRLQDIQDHEDIQLSRGGLILIGL 211
Query: 209 LIGNDHDLNGVQGIGL------------DTALQFVQNFSEDEILNILH 244
L G D++ G++ G+ DT + S++E+++ LH
Sbjct: 212 LSGGDYE-EGLRKCGMVTAHSLARCGFGDTLFEAANKLSQEELVDFLH 258
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 99/215 (46%), Gaps = 39/215 (18%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL FFRTIN F + G PV+V DG P K YR TI+ + E G L E
Sbjct: 60 HLSGLFFRTIN-FLQEGLLPVYVFDGRPPEEK--------YR-TIEKRAVAREEAGKLYE 109
Query: 112 ----------------RNQTFLK-CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYV 154
R + K V+ +LL+ G+P + A E EA A + ++G V
Sbjct: 110 AALAEGDLEAARRYAQRAASLEKYMVESAADLLKAMGVPYVMAPSEGEAQAAYMAAKGSV 169
Query: 155 DACITADSDAFLFGAKCVVKCIR-------PNTKEPFECY----CISDIEAGLGLKRKHL 203
A + D D+ LFG+ +V+ + P KE E + + A LGL R+ L
Sbjct: 170 YAAGSQDMDSLLFGSPRLVRNLSIVGRRKLPGRKEYVEVVPEIIYLDKLLASLGLTREQL 229
Query: 204 IAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
I + LL+G D+ V+G+G TAL+ V+ + E
Sbjct: 230 IDIGLLVGTDYSPQ-VRGVGPKTALKIVKEYGSLE 263
>gi|195339243|ref|XP_002036229.1| GM16947 [Drosophila sechellia]
gi|194130109|gb|EDW52152.1| GM16947 [Drosophila sechellia]
Length = 1108
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 734 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 793
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 794 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 845
>gi|389750370|gb|EIM91541.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 579
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 116/259 (44%), Gaps = 44/259 (16%)
Query: 1 MGVGGKFWDLLKPYAR---------FEGLDF---LRDKRVAVDLSYWIVQHETAIKK--- 45
MG+ G W L+P AR GL + R+ +D + ++ + K+
Sbjct: 1 MGIPG-LWKELEPVARNLSLVEFGIVHGLAAEGGPKQARIGIDAAVFVYKALGKFKRRYS 59
Query: 46 NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE 105
S P P L+ + + L A+ P+FV DG P + R F +
Sbjct: 60 GSPPMPELQDIVSKLLRL-AQTPLTPIFVFDGPKRPKVKRERQTVFRVHWL--------- 109
Query: 106 EGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAF 165
Q F K +E+ G L A GEAEA A+L+ EG++DA ++ D DA
Sbjct: 110 -------AQVFRK-------FIEVMGFLCLDAPGEAEAELARLSEEGFIDAVMSEDIDAL 155
Query: 166 LFGAKCVVKCIRPNTKEPFECYCISDIE--AGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
FGA+ V++ + +++ F+ Y +D E L L R ++ ++LL G D+D G+ G G
Sbjct: 156 AFGARAVIRIVN-FSEDVFKIYHAADCENNPDLRLTRAGIVLVALLSGGDYD-KGLTGFG 213
Query: 224 LDTALQFVQNFSEDEILNI 242
TA++ + D +L I
Sbjct: 214 ATTAIRVARYGLGDVLLQI 232
>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
Length = 380
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 21/235 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRRDGNVLQNDDGETTSHLMGMFYRTIRMLDS-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + EC +LL L
Sbjct: 88 KPPQLKSGELEKRGERRAEAEKLLAQAQEMGEQENIDKFSKRLVKVTKQHNDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G A T D D FG +++ + + K + +
Sbjct: 148 MGVPYIEAPCEAEASCAALVKAGKAYATATEDMDGLTFGTSVLLRHLTASEAKKLSIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILN 241
S + + L + I + +L+G D+ ++GIG A+ ++ + S +EIL+
Sbjct: 208 HFSRVLQEMSLSHQQFIDLCILLGCDY-CGTIKGIGPKRAIDLIKQYGSIEEILD 261
>gi|357620639|gb|EHJ72769.1| hypothetical protein KGM_08405 [Danaus plexippus]
Length = 1103
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
+ +E ELL++FG+P + A EAEA CA L + D IT DSD +LFG + V K
Sbjct: 708 QMTKEAQELLQIFGIPYIVAPMEAEAQCAVLEALKLTDGTITDDSDIWLFGGRTVYKNFF 767
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N K+ + IE L R+ L+ ++LL+G+D+ + GV G+G TAL+ + +F
Sbjct: 768 -NQKKHVLQFLRERIEKSFNLSREKLVLLALLVGSDYTV-GVTGVGPVTALEILASF 822
>gi|405975699|gb|EKC40248.1| DNA repair protein complementing XP-G cells-like protein
[Crassostrea gigas]
Length = 1005
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E +LL+LFG+P + + EAEA CA L+S + IT DSD +LFG + V K N
Sbjct: 640 EAQDLLKLFGVPFVLSPTEAEAQCAWLDSANLTNGTITDDSDIWLFGGRRVYKNFF-NQD 698
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E + I++ LGL R+ I M+LL G+D+ +G+ G+G TA++ + F
Sbjct: 699 RTVELFMNDSIQSQLGLNREIFINMALLCGSDY-TDGIPGVGPVTAMEILSEF 750
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--KPHLRLTF 57
MGV G W LL+P R L L K +AVD+S W+ Q ++ K+ P HL + F
Sbjct: 1 MGVHG-LWHLLQPTGRPVSLQSLEGKVLAVDVSIWLHQAVKGMRNKDGSPISNAHLHVLF 59
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTI 96
R L + PVFV DG LK Q +R + I
Sbjct: 60 TRVCKLLY-YKIKPVFVFDGRVPELKKQTMASRREKKMI 97
>gi|315055715|ref|XP_003177232.1| hypothetical protein MGYG_01313 [Arthroderma gypseum CBS 118893]
gi|311339078|gb|EFQ98280.1| hypothetical protein MGYG_01313 [Arthroderma gypseum CBS 118893]
Length = 765
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 115/265 (43%), Gaps = 43/265 (16%)
Query: 1 MGVGGKFWDLLKP-----YARFEGLDFLRDK---RVAVDLSYWIVQHETAIKKNSVPKPH 52
MG+ G D L P ARF R + R+AVD+S W+ Q + A P
Sbjct: 1 MGIPG-LKDELGPGERVSLARFSIGHLQRTRKPLRIAVDISIWLFQVQAA---QGGANPA 56
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
LR FFR L + P+FV DG P + RL V +
Sbjct: 57 LRTLFFRLTRLIS-LPIQPIFVFDGPHRPDYKRGRL---------------------VSK 94
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKC- 171
N + + +L+ELF P A GEAEA CA+L G VDA ++ D DA +FG+K
Sbjct: 95 NAAAAQ-IDLSRKLIELFSYPCHVAPGEAEAECAKLQRTGVVDAVMSNDVDALMFGSKVT 153
Query: 172 VVKCIRPNTKEPFECYCIS-------DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGL 224
++ + + K+ + D ++ + L + ++ ++LL G D+ GV G
Sbjct: 154 LLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVALDTRGMVLVALLSGGDYSPAGVALCGP 213
Query: 225 DTALQFVQNFSEDEILNILHKIGNG 249
A++ + +++L I + +G
Sbjct: 214 KLAVEIARAGFGEDLLAITRDMLSG 238
>gi|443898824|dbj|GAC76158.1| hypothetical protein PANT_19d00141 [Pseudozyma antarctica T-34]
Length = 650
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 112/288 (38%), Gaps = 84/288 (29%)
Query: 1 MGVGGKFWDLLKPYARFEGL------------DFLRDKRVAVDLSYWIVQHETAIKKNSV 48
MG+ G W L P A+ L + LR R+ +D S W+ + + +
Sbjct: 1 MGIPG-LWACLSPAAQSTTLPAYTLHALTANTNSLRALRLGIDASLWLFHAQ---QSSGG 56
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGI 108
P LRL F+R AK A PV V+ D P + G
Sbjct: 57 SNPALRLLFYR----LAKLLALPVLVL------------------FVFDGPDRPAWKRGK 94
Query: 109 LVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
V+ Q ++ Q EL+E FG ++A GEAEA A ++ EG +DA +T D+DA LFG
Sbjct: 95 QVKGRQHAVE--QPLTELIEAFGFSWMRAPGEAEAQLASMSREGVLDAVVTDDADALLFG 152
Query: 169 AKCVVKCIRPN--------TKEPFE----------------------------------C 186
A+ V++ N T E +
Sbjct: 153 AQVVIRNWGKNLSGTKASKTSEEVDPPPQATQATQAAQAAQAEDGDLQLSGSDRDHLITM 212
Query: 187 YCISDIEAG--LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
Y D+ A +GL R L+ ++L+ G D+D G+ G+ AL +
Sbjct: 213 YTAHDLVASEEMGLDRDALVLIALMSGGDYDTTGLAQCGVKIALALAR 260
>gi|47201249|emb|CAF87424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 175
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
VQE ELL LFG+P L A EAEA CA L+ IT DSD +LFG + V K
Sbjct: 53 AVQE--ELLRLFGVPFLIAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKNFFS 110
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
K E + SD++ LGL R LI ++ L+G+D+ GV G+G T ++ + F+
Sbjct: 111 QNK-YVEYFQYSDLQNALGLDRTKLINLAYLLGSDY-TEGVAGVGYVTGMEVLNEFT 165
>gi|346979176|gb|EGY22628.1| hypothetical protein VDAG_04066 [Verticillium dahliae VdLs.17]
Length = 828
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 89/216 (41%), Gaps = 34/216 (15%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D++ W Q + A + P +R F+R + L PVFV DG P+
Sbjct: 31 RPLRVAIDIAIWQFQTQAAKGGTN---PAIRTLFYRLVRLVG-LPVQPVFVFDGPNKPIF 86
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
R R R AS + L+ LFG P+ +A GEAEA
Sbjct: 87 K--RNKRSGRGDGIASAM---------------------AKRLIRLFGFPIHQAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP----NTKEPFECYCISDIEAGL--- 196
CA L EG VDA ++ D D +FG + K P E L
Sbjct: 124 ECALLQQEGLVDAVLSEDVDTIMFGCSRTFRNWSAEGSRGGKSPTHVTVYDTNEQSLIAS 183
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
GL R ++ ++L+ G D+ GV G GL A + +
Sbjct: 184 GLDRHGMVLVALMSGGDYLPEGVPGCGLKLACEVAR 219
>gi|326482509|gb|EGE06519.1| hypothetical protein TEQG_05519 [Trichophyton equinum CBS 127.97]
Length = 768
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 35/220 (15%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
R+AVD+S W+ Q + A + P LR FFR L + P+FV DG
Sbjct: 34 RLAVDISIWLFQVQAAQGGTN---PALRTLFFRLTRLIS-LPIQPIFVFDGP-------- 81
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCA 146
+R P + G LV +N + ++ +L+ELF P A GEAEA CA
Sbjct: 82 -----HR--------PDYKRGRLVSKNAAAAQ-IELSRKLIELFSYPCHMAPGEAEAECA 127
Query: 147 QLNSEGYVDACITADSDAFLFGAKC-VVKCIRPNTKEPFECYCIS-------DIEAGLGL 198
+L G VDA ++ D DA +FG+K ++ + + K+ + D ++ + L
Sbjct: 128 KLQQAGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTL 187
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ-NFSED 237
K ++ ++LL G D+ GV G A++ + F ED
Sbjct: 188 DTKGMVLVALLSGGDYSPAGVALCGPKLAVEIARAGFGED 227
>gi|195030390|ref|XP_001988051.1| GH10954 [Drosophila grimshawi]
gi|193904051|gb|EDW02918.1| GH10954 [Drosophila grimshawi]
Length = 1183
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ + IT DSD +LFG + V K K
Sbjct: 794 DCQELLRLFGIPYIVAPMEAEAQCAFLNAVEITNGTITDDSDIWLFGGRTVYKNFFAQNK 853
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE---DE 238
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +F+ D
Sbjct: 854 HVLE-FRAEQIEQTFNCNRSKLIQLACLVGSDY-TTGIHGIGAVTALEILASFTTSKLDS 911
Query: 239 ILNILHKIGNG 249
L NG
Sbjct: 912 ATTSLDTASNG 922
>gi|449329677|gb|AGE95947.1| structure-specific endonuclease of the XPG/RAD2 family
[Encephalitozoon cuniculi]
Length = 345
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 22/253 (8%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSV-------PKPHLRLTFFRTINLFAKFGAFPV 72
L + K+VA+D S + Q A++ P HL F+RTI + + G PV
Sbjct: 23 LVYYSSKKVAIDASMSMYQFLIAVRSGGATLGNEDSPTSHLVGFFYRTIRM-VELGITPV 81
Query: 73 FVVDGTPSPLK------SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ--ECV 124
+V DG P +K + R A R +AS + E + ++ +T + V EC
Sbjct: 82 YVFDGVPPEIKMKELEKRKERRAAADREYREASEVGDKELMEMYDKRKTKVTGVHVDECK 141
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE-- 182
LL L G+P A EAEA CA L + V T D DA FG+ V++ +
Sbjct: 142 RLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDMDALTFGSPVVLRNFNGTQSKRL 201
Query: 183 PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNI 242
P + + I L L I + +L+G D+ + ++GIG AL ++ I NI
Sbjct: 202 PVMEHNLPQILEDLSLDHSEFIDLCILLGCDY-CSTLKGIGPKKALGLIKKHR--SIGNI 258
Query: 243 LHKIGNGDIPQYW 255
L K + ++P W
Sbjct: 259 L-KNEDLEVPGDW 270
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 24/246 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q AI+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAIRQDGSQMQSEDGETTSHLMGMFYRTIRMIDN-GIKPVYVFDG 87
Query: 78 TPSPLKS------QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ--ECVELLEL 129
P +KS R A ++ +A A+E ER + Q E +LL L
Sbjct: 88 KPPDMKSGELEKRTERRAEAEKALTEAKEKGDAKEAEKFERRLVKVTKQQNEEVKQLLGL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV--KCIRPNTKE-PFEC 186
G+PV++A EAEA CA L G V T D DA FG+ CV+ + P K+ P +
Sbjct: 148 MGIPVVEAPCEAEAQCANLVKAGKVYGTATEDMDALTFGS-CVLLRHLLAPEAKKIPIKE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ ++ + + L + I + +L+G D+ ++GIG A++ ++ I +L I
Sbjct: 207 FHLARVLEEMQLTKDQFIDLCILLGCDY-CGTIRGIGPKKAVELIKQHK--NIETVLENI 263
Query: 247 GNGDIP 252
P
Sbjct: 264 DQTKYP 269
>gi|5758316|gb|AAD50780.1|AF162793_1 XPG variant [Drosophila melanogaster]
Length = 1257
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 883 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 942
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 943 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 994
>gi|78706854|ref|NP_001027232.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
gi|10728671|gb|AAG22424.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
Length = 1257
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 883 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 942
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 943 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 994
>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
gi|74621278|sp|Q8SS91.1|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 22/253 (8%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSV-------PKPHLRLTFFRTINLFAKFGAFPV 72
L + K+VA+D S + Q A++ P HL F+RTI + + G PV
Sbjct: 23 LVYYSSKKVAIDASMSMYQFLIAVRSGGATLGNEDSPTSHLVGFFYRTIRM-VELGITPV 81
Query: 73 FVVDGTPSPLK------SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ--ECV 124
+V DG P +K + R A R +AS + E + ++ +T + V EC
Sbjct: 82 YVFDGVPPEIKMKELEKRKERRAAADREYREASEVGDKELMEMYDKRKTKVTGVHVDECK 141
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE-- 182
LL L G+P A EAEA CA L + V T D DA FG+ V++ +
Sbjct: 142 RLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDMDALTFGSPVVLRNFNGTQSKRL 201
Query: 183 PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNI 242
P + + I L L I + +L+G D+ + ++GIG AL ++ I NI
Sbjct: 202 PVMEHNLPQILEDLSLDHSEFIDLCILLGCDY-CSTLKGIGPKKALGLIKKHR--SIGNI 258
Query: 243 LHKIGNGDIPQYW 255
L K + ++P W
Sbjct: 259 L-KNEDLEVPGDW 270
>gi|195473066|ref|XP_002088817.1| GE18773 [Drosophila yakuba]
gi|194174918|gb|EDW88529.1| GE18773 [Drosophila yakuba]
Length = 1237
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 863 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 922
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 923 HVLE-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 974
>gi|449299844|gb|EMC95857.1| hypothetical protein BAUCODRAFT_109503 [Baudoinia compniacensis
UAMH 10762]
Length = 393
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 21/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSLYSFLVAVRSDGQQLMSDTGETTSHLMGLFYRTLRIVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + + A+E E + F + E LL+L
Sbjct: 88 APPKLKSGELAKRFQRKSEAQESHEEAKETGTAEEVEKFSRRTVRVTREHNAEAQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGVPFIIAPTEAEAQCAVLARAGKVYAAASEDMDTLTFNSPVLLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHKI 246
+ + +GL + I + +L+G D+ ++ V+GIG AL ++ ++++ + K
Sbjct: 208 HLDAVLSGLEMDLPQFIDLCILLGCDY-VDPVKGIGPKVALALIREHKTLEKVVESVTKS 266
Query: 247 GNGDIPQYW 255
G P W
Sbjct: 267 GKYTFPDDW 275
>gi|239607122|gb|EEQ84109.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 816
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D+S W+ Q + + P LR F+R + L P+FV DG P
Sbjct: 31 RPIRVAIDISIWLFQIQAGKGGTN---PELRTLFYRLVRLTG-LPVHPLFVYDGPQRPT- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ R + V + G ++ R++ L++LF P A GEAEA
Sbjct: 86 -------YKRGKLIGRNTGVGDLGRVIRRSKY----------LIDLFRFPHHTAPGEAEA 128
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP---------FECYCISDIE- 193
CA+L + G VDA ++ D DA +FG+K + + D E
Sbjct: 129 ECARLQTSGVVDAVMSNDVDAIMFGSKVTIMNFSKENSSGTNAATHVTLYRTEGTGDEEK 188
Query: 194 AGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
+ L R +I +LL G D+ GV G A + VQ +E+L +
Sbjct: 189 PNVPLDRGGMILFALLSGGDYLPAGVPKCGPKLAGEIVQAGFGNELLQAI 238
>gi|154151645|ref|YP_001405263.1| flap endonuclease-1 [Methanoregula boonei 6A8]
gi|166973700|sp|A7IA59.1|FEN_METB6 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154000197|gb|ABS56620.1| XPG I [Methanoregula boonei 6A8]
Length = 333
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 117/266 (43%), Gaps = 45/266 (16%)
Query: 1 MGVGGKFWDLLKPY---ARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP------- 49
MGV D+L Y +EGL + AVD + + Q T I++ + P
Sbjct: 1 MGVA--LRDILADYKTPVTWEGLSGV----AAVDANNTLYQFLTIIRQPDGTPLMDAKGR 54
Query: 50 -KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF---------YRSTIDAS 99
HL FR +N K G PVFV DG P LK + R Y+ ++
Sbjct: 55 VTSHLSGILFRMVNFLEK-GIKPVFVFDGKPPELKQETNAERKKLRDEAGEKYKEAVERG 113
Query: 100 TLPVAEEGILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDAC 157
EE R+ T + + ELL+L G+P ++A E EA A + G
Sbjct: 114 D---EEEAYRQARSATRVDETIIATSKELLDLLGIPYVQAPSEGEAQAAFMVQRGDARFA 170
Query: 158 ITADSDAFLFGAKCVVKCI----------RPNTKEPFECYCISDIEAGLGLKRKHLIAMS 207
++ D D LFGA +++ + R T P E +S++ +GL L R+ L+ +
Sbjct: 171 VSQDYDTLLFGAPLLMRNLTVSGKRKIRGRAVTVNP-ERLVLSEVLSGLSLTREQLVEVG 229
Query: 208 LLIGNDHDLNGVQGIGLDTALQFVQN 233
+L+G D + G G+G TAL+ V++
Sbjct: 230 ILVGTDFN-PGAAGVGAKTALKIVKS 254
>gi|5758314|gb|AAD50779.1|AF162792_1 XPG [Drosophila melanogaster]
Length = 1236
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 862 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 921
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 922 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 973
>gi|193083976|gb|ACF09651.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-56-E4]
gi|193084049|gb|ACF09722.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote KM3-86-C1]
Length = 341
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILV 110
HL +R +N F G PV+V DG P LK+ A + R +A+ A+ +
Sbjct: 57 HLTGLLYRNVN-FLSMGIKPVYVFDGKPPSLKT-AEIERRKLGKKEATIKYEKAKASGDL 114
Query: 111 ERNQTFLK--------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E + + + V++ L+LFG+P ++AK + EA A +N G DA + D
Sbjct: 115 ESARKYAQQTTSMQDTMVEDSKHFLDLFGIPYVQAKADGEATAAYMNKNGMADAVASQDF 174
Query: 163 DAFLFGAKCVVKCIRPNT-----KEPFECYCISDIEA----------GLGLKRKHLIAMS 207
D+ LFGA VK IR T K P I DIE LG+ + +I +
Sbjct: 175 DSILFGA---VKLIRNFTNSGRRKLPNRNTYI-DIEPEIISYQKSLDALGITGEQIIDIG 230
Query: 208 LLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+LIG D + +G + IG TAL+ ++ + + E
Sbjct: 231 ILIGTDFNPDGFERIGPKTALKMIKEYGKLE 261
>gi|254581574|ref|XP_002496772.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
gi|238939664|emb|CAR27839.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
Length = 1030
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ + +LL FG+P + A EAEA CA L + VD IT DSD FLFG V K +
Sbjct: 770 MITDVQDLLSRFGVPYITAPMEAEAQCATLMRDRLVDGVITDDSDVFLFGGNKVYKNMF- 828
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+ + E Y I LGL R +I ++ L+G+D+ NG++G+G + ++ + F E
Sbjct: 829 SERNYVEYYDAESIYKNLGLDRNGMIELAQLLGSDY-TNGIKGMGPVSGMEVIAEFGSLE 887
Query: 239 ILNILHKIGNGD 250
H G D
Sbjct: 888 EFRKWHNEGQFD 899
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD++ P AR L+ L+D+++AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHS-FWDVVGPTARPVRLESLQDRKMAVDASIWIYQFLKAVRDQEGNALKHSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGVPALK 84
>gi|440491836|gb|ELQ74443.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 335
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-------NSVPKPHLRLTFFRTINLFAKFGAFPV 72
L F R K++A D S Q+ AI+ NS H+ F++ INL A+ G P+
Sbjct: 21 LSFYRTKKMAFDASLLTYQYLVAIRSDGAQLAHNSSSTSHISGFFYKIINL-AEIGIKPL 79
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGI----LVERNQTFLKCVQECVE--- 125
FV DG P +KS+ R R A AEE + + + ++ LK +E +
Sbjct: 80 FVFDGKPPQVKSEEIARRNERRKDAAEKYSEAEEQMDKVKMEKYDKRKLKIGKEHTDDIK 139
Query: 126 -LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
LL+ G+ ++ EAEA CA L +G VD T D DA F A ++K K+
Sbjct: 140 SLLDAMGVAYTISENEAEAFCAALCRKGIVDYVCTEDMDALCFRAPVLLKNF---VKDSV 196
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
Y + +I + L+ + + +L+G D+ ++GIG
Sbjct: 197 AEYRLDEILRDMKLEFDEFVDLCILLGCDY-AGTIKGIG 234
>gi|78706850|ref|NP_001027230.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
gi|78706852|ref|NP_001027231.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|5051952|gb|AAD38375.1|AF144092_1 nucleotide excision repair protein MUS201 [Drosophila melanogaster]
gi|7297419|gb|AAF52678.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|28380312|gb|AAO41169.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
Length = 1236
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 862 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 921
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 922 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 973
>gi|393213357|gb|EJC98853.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 403
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 104/233 (44%), Gaps = 21/233 (9%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAFPVF 73
L ++VA+D S I Q A+++ + HL F+RTI + G P +
Sbjct: 26 LFGRKVAIDASMSIYQFLIAVRQKDGELLTNESGETTSHLMGFFYRTIRIVEN-GIKPAY 84
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVE 125
V DG P LKS RF R A+E E + F + +EC +
Sbjct: 85 VFDGKPPDLKSGVLAKRFERREEAKEEGEEAKETGTAEDMERFTRRQVKVTKEHNEECRK 144
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEP 183
LL L G+PV+ A EAEA CA+L G V A + D D F A + + K+P
Sbjct: 145 LLGLMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILYRHLTFSEAKKQP 204
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
+ GL + I + +L+G D+ L ++GIG +AL+ V+++ +
Sbjct: 205 ISEINLQKALEGLEMNMSQFIDLCILLGCDY-LEPIKGIGPKSALKLVRDYGD 256
>gi|194863176|ref|XP_001970313.1| GG10553 [Drosophila erecta]
gi|190662180|gb|EDV59372.1| GG10553 [Drosophila erecta]
Length = 1237
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 863 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 922
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 923 HVLE-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 974
>gi|5712619|gb|AAD47568.1|AF125578_1 DNA repair endonuclease [Drosophila melanogaster]
Length = 1236
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 862 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 921
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 922 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 973
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S + Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAVDASMCLYQFLIAVRQDGSQLQTESGETTSHLLGMFYRTIRMIDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRST----IDASTLPVAEEGILVERNQTFLKCVQECVE----LLEL 129
P +K+ R R + + + +E + + + +K +E E L+ L
Sbjct: 88 KPPQMKTSELEKRIERRAEAEKQRSDAVELGDEASVNKFARRLVKVTKEQNEEAKRLVTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+PVL A EAEA CA L G V A ++ D DA FG+ +++ + + K P +
Sbjct: 148 MGIPVLDAPCEAEAQCAALARAGKVFATVSEDMDALTFGSPILLRQMIASEAKKLPVKEM 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ + G+ + I + +L+G D+ ++ ++GIG A + ++ + I N+L I
Sbjct: 208 NLNQVLKDFGMNMEQFIDLCILLGCDY-VSTIRGIGPKKAFELIKK--HECIENVLKIID 264
Query: 248 NGD--IPQYW 255
IP+ W
Sbjct: 265 QTKYAIPKNW 274
>gi|329764928|ref|ZP_08256517.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138597|gb|EGG42844.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 339
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF----------YRSTIDASTL 101
HL +R IN F G PV+V DG P LK+ A + R Y I A +
Sbjct: 57 HLSGLLYRNIN-FLSLGIKPVYVFDGKPPSLKT-AEIERRKQIKKDATVKYEKAIAAGNM 114
Query: 102 PVAEEGILVERNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
E+ + T +K V+E ++L FG+P + A E EA+ A L + G A +
Sbjct: 115 ---EDARKFAQQTTSMKDGMVKESKQILTYFGIPYIDAPSEGEAMAAHLTNTGQAYASAS 171
Query: 160 ADSDAFLFGAKCVV---------KCIRPNTKEPFECYCISDIEA--GLGLKRKHLIAMSL 208
D D+ L GAK ++ K NT E I + LG+ R+ L+ + +
Sbjct: 172 QDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPEIIETQKTLDALGVTREQLVDIGI 231
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
LIG D + NG IG TAL+ ++ S E DIPQ
Sbjct: 232 LIGTDFNPNGFDRIGPKTALKMIKQHSRLE-----------DIPQ 265
>gi|327351073|gb|EGE79930.1| XPG family protein [Ajellomyces dermatitidis ATCC 18188]
Length = 838
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R RVA+D+S W+ Q + + P LR F+R + L P+FV DG P
Sbjct: 31 RPIRVAIDISIWLFQIQAGKGGTN---PELRTLFYRLVRLTG-LPVHPLFVYDGPQRPT- 85
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ R + V + G ++ R++ L++LF P A GEAEA
Sbjct: 86 -------YKRGKLIGRNTGVGDLGRVIRRSKY----------LIDLFRFPHHTAPGEAEA 128
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP---------FECYCISDIE- 193
CA+L + G VDA ++ D DA +FG+K + + D E
Sbjct: 129 ECARLQTSGVVDAVMSNDVDAIMFGSKVTIMNFSKENSSGTNAATHVTLYRTEGTGDEEK 188
Query: 194 AGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
+ L R +I +LL G D+ GV G A + VQ +E+L +
Sbjct: 189 PNVPLDRGGMILFALLSGGDYLPAGVPKCGPKLAGEIVQAGFGNELLQAI 238
>gi|324501186|gb|ADY40530.1| DNA repair protein RAD2 [Ascaris suum]
Length = 947
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 97 DASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDA 156
+AS A+ +ER Q + +EC ELL L G+P + + GEAEA C +L G V
Sbjct: 475 EASARKEAQMEAELEREQEGV--YKECQELLRLCGIPFVVSPGEAEAQCCELERLGLVQG 532
Query: 157 CITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDL 216
++ DSD +LFGA V K + N K + + I LGL R + ++LL G D+
Sbjct: 533 IVSDDSDVWLFGASTVYKNM-FNQKRRVQMFSSETIHKQLGLTRWETVQIALLSGGDY-T 590
Query: 217 NGVQGIGLDTALQFVQNFS 235
G+ IG+ TAL+ + F+
Sbjct: 591 PGLDNIGVVTALELISEFA 609
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MG+ G W +L+P A L+ L KR A+D+S W+ Q AI + + R
Sbjct: 1 MGIQG-LWPILEPTAEPVTLESLEGKRFAIDVSLWLYQ---AIYGYGLYQQETRCPHLSL 56
Query: 61 INLFAKFGAF----PVFVVDGTPSPL-KSQARLARFYRSTIDASTLPVAEEGILVE 111
+ F PVFV DG PL K + R + +D T+ A++ +L E
Sbjct: 57 LLSRLSKLLFYKIRPVFVFDGPNVPLFKRKILRERQLKRFMDEITVSKAQKRVLTE 112
>gi|300707184|ref|XP_002995811.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
gi|239605030|gb|EEQ82140.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
Length = 265
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 101/226 (44%), Gaps = 21/226 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS-------VPKPHLRLTFFRTINLFAKFGAFPVFVVDGT 78
K+VA+D+S +I Q A++ HL F+RTI + + G P+FV DG
Sbjct: 29 KKVAIDISNFIYQFLIAVRSGGNALGYGDTTTSHLVGMFYRTIRI-VESGVTPIFVFDGK 87
Query: 79 PSPLKSQARLARFYRSTIDASTLPVA---EEGILVERNQTFLKC------VQECVELLEL 129
P LK R R L +A E+ +E+ QT K V +C LL+L
Sbjct: 88 PPELKLYELKKRSDRRDKAEEQLKLAMEAEDKAEIEK-QTKRKIKVSEEHVNDCKRLLKL 146
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P L A EAEA CA L VDA T D DA FGA +++ K Y
Sbjct: 147 MGIPYLTAPSEAEAFCAYLCKVKCVDAVATEDMDALPFGAPVLLRGFSSAAVKKTHVTEY 206
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ L + I + +L+G D+ +G +GIG + ++N
Sbjct: 207 NLQTCLGELDMNLPEFIDLCILLGCDYTESG-KGIGPKKGVSLIKN 251
>gi|346327520|gb|EGX97116.1| flap structure-specific endonuclease [Cordyceps militaris CM01]
Length = 770
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 37/211 (17%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D++ W Q + A + P +R F+R + L A PVF+ DG P
Sbjct: 31 RPLRLAIDVAIWQFQAQAARGGTN---PAIRTLFYRLVRLLA-IPVQPVFIFDGPNKP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ R R R +G+ + L+ LFG+P L A GEAEA
Sbjct: 85 TTKRNKRSGRG-----------DGV----------ANSQAKRLIRLFGLPALDAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIE-------AGL 196
CA L G VDA ++ D D +FG C K +R + E + + A
Sbjct: 124 ECALLQRHGIVDAVLSEDVDTIMFG--C-TKTLRNWSSEGKTSTAPTHVSLYDTAAVANH 180
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
GL R+ ++ ++L+ G D+ +G+ G G+ A
Sbjct: 181 GLGRQGMVLVALMSGGDYLPDGIPGCGVKVA 211
>gi|400597409|gb|EJP65142.1| DNA repair endonuclease rad2 [Beauveria bassiana ARSEF 2860]
Length = 808
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 105/242 (43%), Gaps = 46/242 (19%)
Query: 1 MGVGGKFWDLLKPYARFE----GLDFL----RDKRVAVDLSYWIVQHETAIKKNSVPKPH 52
MG+ G + +L P R D L R R+A+D++ W Q + A + P
Sbjct: 1 MGIKGIYGEL-GPGQRVSLSKLAADTLQAEGRPLRIAIDVAIWQFQAQAARGGTN---PA 56
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
+R F+R + L A P+FV DG P + R R R +G+
Sbjct: 57 IRTLFYRLVRLLA-IPVQPIFVFDGPNKP--TTKRNKRSGRG-----------DGV---- 98
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
+ L+ LFG+P L A GEAEA CA L G VDA ++ D D +FG C
Sbjct: 99 ------ANSQAKRLIRLFGLPALDAPGEAEAECALLQRHGIVDAVLSEDVDTIMFG--C- 149
Query: 173 VKCIRPNTKEPFECYCISDIE-------AGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
K +R + E + + A GL R+ ++ ++L+ G D+ +G+ G G+
Sbjct: 150 TKTLRNWSAEGKTVTVPTHVSLYDTAAVANHGLDRQGMVLVALMSGGDYLPDGLPGCGVK 209
Query: 226 TA 227
A
Sbjct: 210 VA 211
>gi|317374948|sp|Q0UZR3.3|FEN1_PHANO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 396
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMSETGETTSHLMGLFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R + + A+E E + F + +EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKSEAHAAAEEAKETGTAEDVEKFSRRTVRVTREHNEECRRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP
Sbjct: 148 MGIPFIIAPTEAEAQCATLARGGKVYAAASEDMDTLTFNTPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRK--HLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
+ + GL ++R+ I + +L+G D+ L+ ++GIG TAL+ +++
Sbjct: 208 HLDKVLEGLEMEREQPQFIDLCILLGCDY-LDPIKGIGPSTALKLIRD 254
>gi|295663294|ref|XP_002792200.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279375|gb|EEH34941.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 381
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G PV+V DG P LKS RF R + A A+E E
Sbjct: 49 HLMGMFYRTLRIVDN-GIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEIGTAE 107
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 108 DVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 167
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ KEP + + L + RK + + +L+G D+ L+ +
Sbjct: 168 TLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEDLDMDRKQFVDLCILLGCDY-LDPIPK 226
Query: 222 IGLDTALQFVQN 233
IG +TAL+ +++
Sbjct: 227 IGPNTALKLIRD 238
>gi|170097587|ref|XP_001880013.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645416|gb|EDR09664.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 853
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 103/259 (39%), Gaps = 61/259 (23%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFL-------------RDKRVAVDLSYWIVQHETAIKKNS 47
MGV G WD+L+P A L L R R+ +D S W E + +
Sbjct: 1 MGVAG-LWDILRPAATTRSLTELSVTEGFEANPHGVRGYRIGIDASIWFFHAEYGREGEN 59
Query: 48 VPKPHLRLTFFRTINLF-AKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE 106
P LR FFR L + F P+FV DG P + +
Sbjct: 60 ---PVLRTLFFRCATLMHSPF--LPLFVFDGPKRPDVKRGK------------------- 95
Query: 107 GILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFL 166
+ N+T K + ++++ FG + A GEAEA A LN G +D ++ D D FL
Sbjct: 96 ----KINKTSHKLIPGMKQIVDAFGFECITAPGEAEAELAYLNHIGVIDGILSDDVDNFL 151
Query: 167 FGAKCVVK----CIRPNTKEP------------FECYCISDIEAG--LGLKRKHLIAMSL 208
FGAK V++ + N P Y ++DI + L R +I + L
Sbjct: 152 FGAKTVIRNPSNSLSGNKSNPSLNSAGKDDKNHTRVYRLADINQNPDVLLTRGGMILIGL 211
Query: 209 LIGNDHDLNGVQGIGLDTA 227
+ G D+ G+ G TA
Sbjct: 212 MSGGDYQQGGLSRCGTKTA 230
>gi|195577623|ref|XP_002078668.1| GD23543 [Drosophila simulans]
gi|194190677|gb|EDX04253.1| GD23543 [Drosophila simulans]
Length = 1235
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 861 DCQELLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 920
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 921 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 972
>gi|390340292|ref|XP_791943.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Strongylocentrotus purpuratus]
Length = 1373
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
E+L+ FG+P +++ EAEA CA L+ + IT D D +LFG + V + K+P
Sbjct: 861 EMLQCFGIPYIESPQEAEAQCAFLDLTNQAEGTITDDGDIWLFGGRRVFRHFFSKKKDP- 919
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E + + DIE L L RK LI ++ L+G+D+ L G+QGIG A++ + F
Sbjct: 920 EYFRVGDIERHLLLDRKKLINLAYLVGSDYTL-GIQGIGSVGAMEILAEF 968
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV G W L++ R L+ L K +AVD+S W+ Q + NS+ PHL++ F R
Sbjct: 1 MGVQG-LWRLVESTGRPVNLESLEGKVIAVDVSIWLNQAVLGVHGNSLSNPHLQVLFNRI 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
L + P+FV DG P LK Q AR R + A+ E I+
Sbjct: 60 CKLLF-YRIKPIFVFDGAPPQLKKQTLAARRQRKNLAAARTEKTTERIV 107
>gi|298706804|emb|CBJ29727.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 476
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 107/246 (43%), Gaps = 24/246 (9%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKKNSVPKP------------HLRLTFFRTINLFAKF 67
LD L ++VAVD S + Q A++ + H++ F RTI + +K
Sbjct: 23 LDSLTGRKVAVDASMAMYQFLIAVRSGGEGQSQMLTNEAGEVTSHIQGMFNRTIRMLSK- 81
Query: 68 GAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV------- 120
G P ++ DG P LK R + + L VA E F K +
Sbjct: 82 GVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAELKVATEADDKNDVDKFSKRLVRVTRDH 141
Query: 121 -QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRP 178
++C +LL L G+PV+ A EAEA CA L EG V T D DA F K + +
Sbjct: 142 NEDCKKLLSLMGVPVVTAPSEAEAQCAALAREGVVYGTATEDMDALTFQTPKLLRRMTFS 201
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSED 237
+ +P + GL L + + + +L G D+ ++GIG AL V Q+ + +
Sbjct: 202 GSNQPILEVDYQKLLQGLELSHEKFVDLCVLCGCDY-TGSIKGIGPKKALALVRQHGTIE 260
Query: 238 EILNIL 243
EI+ L
Sbjct: 261 EIIKHL 266
>gi|363752988|ref|XP_003646710.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890346|gb|AET39893.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
Length = 988
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
++ ++ V + ELL FG+P + A EAEA CA+L VD IT DSD FLFG V
Sbjct: 721 DEVTVEMVTQIQELLTRFGIPYVTAPMEAEAQCAELLKLKLVDGIITDDSDIFLFGGSNV 780
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K + K E Y I LGL R LI+++ L+G+D+ GV+G+G + ++ +
Sbjct: 781 YKNMF-YEKAFVEYYSSDSISLNLGLNRDMLISLAELLGSDY-TTGVKGVGPVSGMEILA 838
Query: 233 NFSEDEILNILHKIGNGD 250
F + E + G D
Sbjct: 839 EFRDLETFRNWYNDGQFD 856
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---PHLRLTF 57
MGV WD++ P + L+ L +KR+AVD S WI Q A N K H+ L F
Sbjct: 1 MGVHS-LWDIVGPTTKPVRLESLSNKRMAVDASIWIYQFLKATPDNGSHKLKNAHI-LGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK----SQARLAR 90
FR I FG PVFV DG PLK Q R AR
Sbjct: 59 FRRICKVLYFGMKPVFVFDGGAPPLKRETIRQRREAR 95
>gi|426193684|gb|EKV43617.1| hypothetical protein AGABI2DRAFT_48292, partial [Agaricus bisporus
var. bisporus H97]
Length = 528
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 112/288 (38%), Gaps = 74/288 (25%)
Query: 1 MGVGGKFWDLLKPYARFEGL-------------DFLRDKRVAVDLSYWIVQHETAIKKNS 47
MGV G WD+LKP A+ L LR R+ +D S W E + +
Sbjct: 1 MGVAG-LWDVLKPAAKTRSLTELAVKEGFQANPKGLRGYRIGIDASIWFFHAEYGKEGEN 59
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSP-LKSQARLARFYRSTIDASTLPVAEE 106
P LR FFR L K P+FV DG P K R+
Sbjct: 60 ---PVLRTLFFRCATL-TKAPFLPLFVFDGPKRPDFKRGKRI------------------ 97
Query: 107 GILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFL 166
N++ K + ++E FG A GEAEA A LN G +D ++ D D FL
Sbjct: 98 ------NKSTNKLITGMKTIVEAFGFEWRTAPGEAEAELAYLNRIGVIDGILSDDVDNFL 151
Query: 167 FGAKCVVK----CIRPNTKEPF------------ECYCISDIE--AGLGLKRKHLIAMSL 208
FGA V++ + N P + + DI+ + L R LI + L
Sbjct: 152 FGALTVIRNQSNNLSGNKSNPVVNSEGKDDKNHTRVFHLQDIQNHEDIQLSRGGLILIGL 211
Query: 209 LIGNDHDLNGVQGIGL------------DTALQFVQNFSEDEILNILH 244
L G D++ G++ G+ DT + S +E+++ LH
Sbjct: 212 LSGGDYE-EGLRKCGMVTAHSLARCGLGDTLFEAANKLSREELVDFLH 258
>gi|308499054|ref|XP_003111713.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
gi|308239622|gb|EFO83574.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
Length = 447
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 104/251 (41%), Gaps = 28/251 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
M + G W+ ++ L+ LRDK +A+D W+ + + + P+ L TFF
Sbjct: 1 MTING-IWEWANHVSQKVALETLRDKVLAIDGHIWLYESLKGCETHHQQTPNSYLITFFT 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQAR------LARFYRSTIDASTLPVAEEGILVERN 113
I + P+ V D S + + R RS D+ +A+ I
Sbjct: 60 RIQRLRELKIIPIVVFDSISSSSAAHEAADQDEFVPRKRRSFGDSPFTNLADHVI----- 114
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
+ LL FG+ V+ A G+ EA CA+L G V CIT D D FLFG K +
Sbjct: 115 --------KTNSLLSHFGVKVIIAPGDGEAQCARLEELGVVSGCITTDFDYFLFGGKNLY 166
Query: 174 KCIRPNTKEPFECYCISDIEAGLG-------LKRKHLIAMSLLIGNDHDLNGVQGIGLDT 226
+ T LG + R HLIA ++L+G D+ GVQ IG+ T
Sbjct: 167 RFDFSATTMLSGARLHDVTHLSLGRMNIEKKVARPHLIATAILLGCDYYQRGVQNIGIIT 226
Query: 227 ALQFVQNFSED 237
+ F ++
Sbjct: 227 VFDILAEFGDN 237
>gi|255076159|ref|XP_002501754.1| flap endonuclease-1 [Micromonas sp. RCC299]
gi|317374911|sp|C1E3X9.1|FEN1_MICSR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|226517018|gb|ACO63012.1| flap endonuclease-1 [Micromonas sp. RCC299]
Length = 384
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 118/266 (44%), Gaps = 32/266 (12%)
Query: 1 MGVGGKFWDLLKPYA-------RFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK--- 50
MG+ G LL YA +FEG +L D++VA+D S I Q + ++ +
Sbjct: 1 MGIKG-LTKLLSDYAPGCMREQKFEG--YL-DRKVAIDASMHIYQFMMVVGRSGEQQLTN 56
Query: 51 ------PHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA 104
HL+ F RT+ + K G PV+V DG P +K R + S L A
Sbjct: 57 EAGEVTSHLQGMFTRTLRML-KAGIKPVYVFDGKPPTMKGGELAKRKDKREAAESALEKA 115
Query: 105 EEGILVERNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDA 156
+E E + K +E ++L G+PV +A EAEA CA L G V A
Sbjct: 116 KEAGDQEEIEKLSKRTVRVSKVHSEEVMKLARFLGLPVFEAPCEAEATCAALCKAGLVYA 175
Query: 157 CITADSDAFLFGA-KCVVKCIRPNTKE-PFECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
+ D D F K + P+++E P + + AGL L I + +L G D+
Sbjct: 176 AASEDMDTLCFSTPKLARNLMAPSSQEKPILEFDFDKLLAGLELTWDQFIDVCILCGCDY 235
Query: 215 DLNGVQGIGLDTALQFVQNFSEDEIL 240
+ ++GIG AL++++ + E L
Sbjct: 236 -CDSIKGIGPVNALKYIKQYGNIEGL 260
>gi|194760687|ref|XP_001962569.1| GF15526 [Drosophila ananassae]
gi|190616266|gb|EDV31790.1| GF15526 [Drosophila ananassae]
Length = 1237
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 862 DCQELLRLFGIPYIVAPMEAEAQCAFLNAADLTHGTITDDSDIWLFGGRTVYKNFFAQNK 921
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 922 HVLE-FRSEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTALEILASFS 973
>gi|367016309|ref|XP_003682653.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
gi|359750316|emb|CCE93442.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
Length = 1012
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
+ E +LL FG+P + A EAEA CA+L VD IT DSD FLFG V K +
Sbjct: 752 MIVEVQDLLSRFGIPFITAPMEAEAQCAELLGLKLVDGIITDDSDVFLFGGSRVYKNMF- 810
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ K E Y I+ LGL R +I ++ L+G+D+ NG++G+G ++++ + F
Sbjct: 811 HEKNYVEFYDYQSIKQNLGLDRDTMIELAQLLGSDY-TNGIKGMGPVSSMEVLAEF 865
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV FWD++ P A+ L+ L+D+R+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHS-FWDIVGPTAKPVRLESLQDRRMAVDASIWIYQFLKAVRDQEGNALKNSHI-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLK 83
FR I FG PVFV DG LK
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGVPALK 84
>gi|448318654|ref|ZP_21508168.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
gi|445598248|gb|ELY52311.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
Length = 325
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL--------- 63
P+ EG+ +AVD W+ ++ T K + + + NL
Sbjct: 16 PFDEIEGV-------IAVDAHNWLYRYLTTTVKWTASEKYTTADGTEVANLIGIVQGLAR 68
Query: 64 FAKFGAFPVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEG------ILVERNQTF 116
F + PV V DG PS LKS+ R R T + EEG L R Q
Sbjct: 69 FFEHDVTPVMVFDGGPSQLKSEEIESRREQRRTYEEQLETAREEGDEVAIAQLESRTQRL 128
Query: 117 LKCVQECV-ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+QE ELLEL +PV++A E EA A L G D + D DA LFGA ++
Sbjct: 129 TPTIQETSRELLELLDVPVVEAPAEGEAQAAHLVKRGDADYVGSEDYDALLFGAPLTLRQ 188
Query: 176 IRPNTKEPFECYCISDIEAGL---GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+ + +P + D+EA L L + LI ++LIG D + GV GIG TA+
Sbjct: 189 L-TSKGDP----ELMDLEATLERHDLTLEQLIDAAILIGTDFN-EGVSGIGPKTAI 238
>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
Length = 336
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 29/252 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+F K VA+D I Q + I++ + P HL +R NL + G
Sbjct: 16 LEFFSGKYVAIDAFNAIYQFLSTIRQPDGTPLKDSQGRITSHLSGLLYRNANLI-EIGIK 74
Query: 71 PVFVVDGTPSPLKSQA--RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVE--- 125
P++V DG P K + R A + + + + + Q K + VE
Sbjct: 75 PIYVFDGEPPEFKKKELERRAELKKEAEEKWKIALEAGEDAKKYAQATAKVDEYIVESSK 134
Query: 126 -LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
LLE G+P ++A E EA A + +G D + D D+ LFG+ + + + K
Sbjct: 135 TLLEYLGIPYVQAPSEGEAQAAYMVRKGDADYTGSQDYDSLLFGSPKLARNLTVTGKRKL 194
Query: 185 ---ECYC-----ISDIEAG---LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
Y I D+EA LG+ R+ LI +++L+G D++ GV+GIG AL++V+
Sbjct: 195 PGKNVYVEIKPEIIDLEANLKKLGITREQLIDVAILVGTDYN-EGVKGIGAKKALKYVKT 253
Query: 234 FSE-DEILNILH 244
+ + ++L +L
Sbjct: 254 YGDVKKVLKVLR 265
>gi|238506000|ref|XP_002384202.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|317151109|ref|XP_001824453.2| DNA repair protein rad2 [Aspergillus oryzae RIB40]
gi|317374884|sp|B8NV37.1|FEN1_ASPFN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220690316|gb|EED46666.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|391868743|gb|EIT77953.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 395
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 20/228 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSDTGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRTARKAEATEAHEEAKETGTAEDVEKFSRRTVRVTRDHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP
Sbjct: 148 MGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+S GL + RK I + +L+G D+ L + +G +TAL+ ++ F
Sbjct: 208 HLSRALEGLDMDRKQFIDLCILLGCDY-LEPIPKVGPNTALKLIREFG 254
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 21/226 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VAVD S I Q + + HL+ FFRT + + G PV+V D
Sbjct: 29 RKVAVDASMHIYQFMVVVGRQGDQLLTNEAGEITSHLQGMFFRTAKML-EAGIKPVYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLE 128
G P LK R R L A+E E + + K EC LL
Sbjct: 88 GKPPQLKQDQLAQRTERRADANEALEKAKEAGDQEAIEKYSKRSVRVTREHNDECKRLLR 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFEC 186
L G+PV++A EAEA CA++ G V T D DA FGA V++ + P+++ P +
Sbjct: 148 LMGVPVVEAPTEAEAQCAEMAKSGLVYGLATEDMDALTFGAPRVIRHLMAPSSQNVPVQE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ L L I + +L+G D+ ++GIG ALQ ++
Sbjct: 208 FDREVALRELELTDDQFIDLCILMGCDY-CGTIRGIGAVRALQMIK 252
>gi|121704724|ref|XP_001270625.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119398771|gb|EAW09199.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 401
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 20/225 (8%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 35 RKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 93
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + EC +LL+L
Sbjct: 94 APPKLKSGELAKRTARKAEATEAHEEAKETGTAEEIEKFSRRTVRVTREHNAECKKLLKL 153
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 154 MGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 213
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
++ + GL + R I M +L+G D+ L + +G +TAL+ ++
Sbjct: 214 HLNRVLEGLDMDRSQFIDMCILLGCDY-LEPIPKVGPNTALKLIR 257
>gi|317374931|sp|A1CJ75.2|FEN1_ASPCL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 20/225 (8%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ ++ HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQQLMSESGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRTARKAEATEAHEEAKETGTAEEIEKFSRRTVRVTREHNAECKKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGVPYIDAPTEAEAQCAVLARAGKVYAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
++ + GL + R I M +L+G D+ L + +G +TAL+ ++
Sbjct: 208 HLNRVLEGLDMDRSQFIDMCILLGCDY-LEPIPKVGPNTALKLIR 251
>gi|393795424|ref|ZP_10378788.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 339
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF----------YRSTIDASTL 101
HL +R IN F G PV+V DG P LK+ A + R Y I A +
Sbjct: 57 HLSGLLYRNIN-FLSLGIKPVYVFDGKPPSLKT-AEIERRKQIKKDATVKYEKAIAAGNM 114
Query: 102 PVAEEGILVERNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
E+ + T +K V+E ++L FG+P + A E EA+ A L + G A +
Sbjct: 115 ---EDARKFAQQTTSMKDGMVKESKQILTYFGIPYIDAPSEGEAMAAHLTNTGQAYASAS 171
Query: 160 ADSDAFLFGAKCVV---------KCIRPNTKEPFECYCISDIEA--GLGLKRKHLIAMSL 208
D D+ L GAK ++ K NT E I + LG+ R+ L+ + +
Sbjct: 172 QDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPEIIETQKTLDALGVTREQLVDIGI 231
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFS 235
LIG D + NG IG TAL+ ++ S
Sbjct: 232 LIGTDFNPNGFDRIGPKTALKMIKQHS 258
>gi|448453282|ref|ZP_21593725.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
gi|445807602|gb|EMA57685.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
Length = 325
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 26/241 (10%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL--------- 63
P+A EG VAVD W+ ++ T K + + + NL
Sbjct: 16 PFAELEG------SVVAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIGVVQGLPK 69
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL-------PVAEEGILVERNQTF 116
F + PV V DG + LK+ R + E L R Q
Sbjct: 70 FFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRL 129
Query: 117 LKCVQECV-ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+QE ELLEL +P+++A E EA CA + + G VD + D D LFGA ++
Sbjct: 130 TDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ 189
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ +K E ++ + L L R+ L+ +++L G D + GV+GIG TA+ V+
Sbjct: 190 L--TSKGDPELMDLAATLSDLDLDRQELVDVAMLCGTDFN-EGVRGIGPKTAVTAVKEHG 246
Query: 236 E 236
+
Sbjct: 247 D 247
>gi|50292567|ref|XP_448716.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608857|sp|Q6FM28.1|FEN1_CANGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49528028|emb|CAG61679.1| unnamed protein product [Candida glabrata]
Length = 381
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 20/246 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ + HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGGQLSTETGETTSHLMGMFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCVQE----CVELLELFG 131
G P LKS R R L A EE ++ + +K +E +LLEL G
Sbjct: 88 GKPPVLKSHELDKRTSRREETEKKLAEATEEAEKMKHERRLVKVSKEHNDEAKKLLELMG 147
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCI 189
+P + A GEAEA CA+L +G V A + D D + +++ KEP
Sbjct: 148 IPYVNAPGEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEINT 207
Query: 190 SDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
+ GL L I + +++G D+ + ++G+G TAL+ ++ E I+ I +G
Sbjct: 208 EIVLQGLELTIDQFIDLGIMLGCDY-CDSIKGVGPVTALKLMKEHGSLE--KIVEYIESG 264
Query: 250 DIPQYW 255
+ W
Sbjct: 265 EANNKW 270
>gi|195155670|ref|XP_002018724.1| GL25951 [Drosophila persimilis]
gi|194114877|gb|EDW36920.1| GL25951 [Drosophila persimilis]
Length = 1238
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 864 DCQELLRLFGIPYIVAPMEAEAQCAFLNATELTHGTITDDSDIWLFGGRTVYKNFFAQNK 923
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TA++ + +FS
Sbjct: 924 HVLE-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTAMEILASFS 975
>gi|340344625|ref|ZP_08667757.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519766|gb|EGP93489.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 341
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL +R IN F G PV+V DG P LK+ A + R + DA+ + E + E
Sbjct: 57 HLSGLLYRNIN-FLSLGIKPVYVFDGKPPSLKT-AEIERRKQIKKDAT---IKYEKAIAE 111
Query: 112 RN----------QTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
N T +K V+E ++L FG+P + A E EA A L + G A +
Sbjct: 112 GNLEDARKFAQQTTSMKDGMVKESKQILSYFGIPYIDAASEGEATAAHLTNTGQAYASAS 171
Query: 160 ADSDAFLFGAKCVV---------KCIRPNTKEPFECYCISDIEA--GLGLKRKHLIAMSL 208
D D+ L GAK ++ K NT E I + L + R+ ++ + +
Sbjct: 172 QDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPEIIETQKTLDSLEITREQIVDIGI 231
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTE 262
LIG D + NG IG TAL+ ++ +S E DIPQ +++ E
Sbjct: 232 LIGTDFNPNGFDRIGPKTALKMIKQYSRLE-----------DIPQIQEQLQTIE 274
>gi|393235585|gb|EJD43139.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 474
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 97/248 (39%), Gaps = 54/248 (21%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPK-PHLRLTFFRTINLFAKFGAFPVFVVDGTPSPL 82
R RV +DLS W+ + KK K +RL FFR +L A PVFV DG P
Sbjct: 29 RGYRVGIDLSIWLGHMQFLSKKPECGKNTGIRLLFFRCAHLLA-MSILPVFVFDGLQWPA 87
Query: 83 KSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAE 142
+ AR Y L L+E+FG +A GEAE
Sbjct: 88 YKHGK-ARKYS-----------------------LSNYGNLYALIEVFGFECHQAPGEAE 123
Query: 143 ALCAQLNSEGYVDACITADSDAFLFGAKCV-VKCIRPNTKEP------------FECYCI 189
A A LN G +DA T DSD FLFGA + N P Y
Sbjct: 124 AELAHLNRIGVIDAIWTDDSDVFLFGATLSPSTTLSANRAHPVINREGKQDDNHVHVYTA 183
Query: 190 SDIEAG--LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF------------VQNFS 235
D+ + L R LI ++LL G D+ GV+G+G+ A VQ+
Sbjct: 184 IDLLTNDTIQLDRDGLILVALLRGGDYH-GGVEGVGIRIAHALARCGFGQSLAAAVQSLQ 242
Query: 236 EDEILNIL 243
+DE N L
Sbjct: 243 QDEFSNAL 250
>gi|302796239|ref|XP_002979882.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
gi|302813529|ref|XP_002988450.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300143852|gb|EFJ10540.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300152642|gb|EFJ19284.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
Length = 377
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 128/275 (46%), Gaps = 27/275 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
+++AVD S I Q + + HL+ F RT+ L G PV+V D
Sbjct: 26 RKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEITSHLQGMFTRTVRLLES-GMKPVYVFD 84
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCV-------QECVELLE 128
G P LK + R R L A E+G + + + + V ++C +LL
Sbjct: 85 GKPPELKKAELVKRGARREEATEGLTEAIEKGEVADIEKYSKRTVKVTKQHNEDCQKLLR 144
Query: 129 LFGMPVLKAKGEAEALCAQL-NSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFE 185
L G+PV++A EAEA CA L ++ V A + D D+ FG+ ++ + P +++ P
Sbjct: 145 LMGIPVIEAPCEAEAECAALCKADKVVYAVASEDMDSLTFGSPRFLRHLMEPASRKIPVM 204
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE-ILNILH 244
+ IS L L I + +L G D+ + ++GIG TAL+ ++ S E +L L+
Sbjct: 205 EFQISTALQELNLSMDQFIDLCILCGCDY-CDTIRGIGPQTALKLIRQHSTLEAVLENLN 263
Query: 245 KIGNGDIPQYWGDIKST---EEAVSHSDESMPMIK 276
K IP+ W ++ +E + DE +P +K
Sbjct: 264 K-DRYQIPESWPYQEARRLFKEPIVLPDEELPELK 297
>gi|198476637|ref|XP_002132415.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
gi|198137788|gb|EDY69817.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
Length = 1236
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C ELL LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 862 DCQELLRLFGIPYIVAPMEAEAQCAFLNATELTHGTITDDSDIWLFGGRTVYKNFFAQNK 921
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TA++ + +FS
Sbjct: 922 HVLE-FRAEQIEQTFNCNRGKLIQLACLVGSDY-TTGIHGIGAVTAMEILASFS 973
>gi|341039026|gb|EGS24018.1| nuclease-like protein [Chaetomium thermophilum var. thermophilum
DSM 1495]
Length = 922
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 33/215 (15%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D++ W Q + A ++ P +R F+R + L + G P+FV DG P+
Sbjct: 31 RPLRLAIDMAIWQFQIQAARGGSN---PAIRTLFYRFVRLLS-LGIHPIFVFDGPNKPIF 86
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ R + T + + +A+ L+ LFG A GEAEA
Sbjct: 87 KRNRRS----GTGNGVSTAMAKR-------------------LIRLFGFTAHDAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCISD----IEAGLG 197
CA L +G VDA ++ D D +FG++ ++ + P + D E G
Sbjct: 124 ECAYLEQQGIVDAVLSEDVDTIMFGSRVTLRDWSSEGSKGGPPTHVTLHDAKKIAEGPSG 183
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
L R+ ++ ++L+ G D+ +G+ G G+ A Q +
Sbjct: 184 LDREGMVLVALMSGGDYLPDGIPGCGIKVACQAAK 218
>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
Length = 1002
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 110 VERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA 169
++R+Q + + LL+LFG+P + A EAEA CA LN+ G I+ DSD FGA
Sbjct: 676 MDRSQYRMDEWDKVPALLDLFGVPFIVAPSEAEAQCAHLNNTGLCFGVISDDSDTLAFGA 735
Query: 170 KCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
K V K + FE Y I LGL R + +++L G D+ GV+GIG+ AL+
Sbjct: 736 KRVFKNFY--SGNVFEVYVADRILHELGLGRNEIALLAILCGCDY-TPGVRGIGVVNALE 792
Query: 230 FVQNF 234
++ F
Sbjct: 793 VIKAF 797
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWI---VQHETAIKKNSVPKPHLRLTF 57
MG+ G WD + ++ LR K+VA+D S+WI + E A+++ + + F
Sbjct: 1 MGIKG-LWDAVAAAGVSSRVELLRGKKVAIDASFWISHCLASEAALRRGN----DIYGVF 55
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
F I + +P+FV DG K + L R
Sbjct: 56 FLRICYLLEKRIYPIFVFDGRTPGAKRRTLLMR 88
>gi|353235791|emb|CCA67798.1| probable DNA repair endonuclease rad2 [Piriformospora indica DSM
11827]
Length = 366
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR------STIDASTLPVAE 105
HL F+RTI + G P +V DG P LKS RF R +A + E
Sbjct: 28 HLMGFFYRTIRMVEN-GIKPCYVFDGKPPELKSGVLAKRFERREEAKEEGDEAKEVGTTE 86
Query: 106 EGILVERNQTFL--KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E R Q + + +EC +LL L G+PV+ A EAEA CA+L G V + D D
Sbjct: 87 EVEKFSRRQVRVTKEHNEECRKLLGLMGIPVVVAPSEAEAQCAELARGGLVYGAGSEDMD 146
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F + +++ N KEP + + GL + + + +L+G D+ L ++G
Sbjct: 147 TLTFNSPILLRHLTFSENRKEPILEISLPAVLEGLEMDMPQFVELCILLGCDY-LEPIKG 205
Query: 222 IGLDTALQFVQN 233
+G +AL+ ++
Sbjct: 206 VGPKSALKLLRE 217
>gi|341882587|gb|EGT38522.1| hypothetical protein CAEBREN_12338 [Caenorhabditis brenneri]
gi|341895701|gb|EGT51636.1| hypothetical protein CAEBREN_24192 [Caenorhabditis brenneri]
Length = 382
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 112/245 (45%), Gaps = 22/245 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRQDGSQLQSEDGETTSHLMGMFYRTIRMIDN-GIKPVYVFDG 87
Query: 78 TPSPLKS------QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQ--ECVELLEL 129
P +KS R A ++ +A A+E ER + Q E LL L
Sbjct: 88 KPPDMKSGELEKRSERRAEAEKALTEAKEKGDAKEAEKFERRLVKVTKQQNEEVKHLLGL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK-CIRPNTKE-PFECY 187
G+PV++A EAEA CA L G V T D DA FG+ +++ + P +K+ P + +
Sbjct: 148 MGIPVVEAPCEAEAQCAHLVKAGKVFGTATEDMDALTFGSSVLLRHLLAPESKKIPIKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ + + L I + +L+G D+ ++G+G A++ ++ I +L I
Sbjct: 208 HLARVLEEMKLSEDEFIDLCILLGCDY-CGTIRGVGPKKAVELIRQHK--NIETVLENID 264
Query: 248 NGDIP 252
P
Sbjct: 265 QTKYP 269
>gi|193084394|gb|ACF10047.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-21-C11]
Length = 341
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 31/230 (13%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLARFYRSTIDASTLPVA---E 105
HL +R +N F G PV+V DG P LK+ Q R +TI + E
Sbjct: 57 HLTGLLYRNVN-FLSIGIKPVYVFDGKPPSLKTAEIQRRKLGKKEATIKYEKAKASGDFE 115
Query: 106 EGILVERNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ T ++ V++ L+LFG+P ++AK + EA A +N G A + D D
Sbjct: 116 SARKYAQQTTSMQDTMVEDSKHFLDLFGIPYIQAKADGEATAAHMNKTGKAYAVASQDYD 175
Query: 164 AFLFGAKCVV---------KCIRPNTKEPFECYCISDIEA--GLGLKRKHLIAMSLLIGN 212
+ LFGA +V K NT E IS ++ LG+ + +I + +L+G
Sbjct: 176 SILFGATKLVRNFTNSGRRKIPNRNTYIDVEPEMISHQKSLDALGITGEQIIDIGILVGT 235
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQYWGDIKSTE 262
D + +G + IG TAL+ ++ + + E DIP+ ++K +
Sbjct: 236 DFNPDGFERIGPKTALKMIKEYGKLE-----------DIPKIQEELKQID 274
>gi|429965038|gb|ELA47035.1| hypothetical protein VCUG_01480 [Vavraia culicis 'floridensis']
Length = 335
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-------NSVPKPHLRLTFFRTINLFAKFGAFPV 72
L F R K++A D S Q+ AI+ NS H+ F++ INL A+ G P+
Sbjct: 21 LSFYRTKKMAFDASLLTYQYLIAIRSDGAQLAYNSTSTSHISGFFYKIINL-AEIGIKPL 79
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGI----LVERNQTFLKCVQECVE--- 125
FV DG P +KS+ R R A AEE + + + ++ LK +E +
Sbjct: 80 FVFDGKPPQVKSEEIARRNERRKNAAEKYSEAEEQMDKVEMEKYDKRKLKIGKEHTDEIK 139
Query: 126 -LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
LL+ G+ ++ EAEA CA L +G VD T D DA F A ++K K+
Sbjct: 140 LLLDAMGVTYTISENEAEAFCATLCRKGIVDYVCTEDMDALCFRAPVLLKNF---VKDTV 196
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
Y + +I + L+ + + +L+G D+ ++GIG
Sbjct: 197 AEYRLDEILRDMKLEFSAFMDLCILLGCDY-AGTIKGIG 234
>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
gi|121684238|sp|Q12UT1.1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 338
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 118/266 (44%), Gaps = 35/266 (13%)
Query: 10 LLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRT 60
LLK GL +K VA+D + Q + I+ ++ P HL +R
Sbjct: 9 LLKDTIEIAGL---SNKVVAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSHLSGILYRL 65
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVE-------R 112
+L + G P+FV DG P KS R R + A +G+ E
Sbjct: 66 TSLI-EAGVKPIFVFDGKPPDFKSDTLAKRHEVRESATAKWEDAKAQGLEEEAYKYAQAS 124
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
++ + + + V LLEL G+P +KA E EA + + +G D + D D+FLFGA V
Sbjct: 125 SKVTREMIDDSVRLLELMGIPYVKAPSEGEAQASYMVQKGDADYIGSQDYDSFLFGAPQV 184
Query: 173 VKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
V+ + K E + D LG+ R+ LI +++ +G D++ G++
Sbjct: 185 VRNLTITGKRKLPKKNIYVDVKPEVLSLVDSLGELGITRQQLIDIAMCVGTDYN-TGLEN 243
Query: 222 IGLDTALQFVQNFSEDEILNILHKIG 247
IG AL+ V+ + ++ +L ++G
Sbjct: 244 IGPKRALKLVKEHGDIKV--VLKELG 267
>gi|255513611|gb|EET89877.1| XPG I domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 352
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 127/267 (47%), Gaps = 37/267 (13%)
Query: 9 DLLKPYARFEGLDF--LRDKRVAVDLSYWIVQHETAIK----------KNSVPKPHLRLT 56
DL K R E LD L K VAVD + Q + I+ K +V HL
Sbjct: 7 DLSKLAVR-EQLDIGSLSGKVVAVDAYNVLYQFLSIIRQPDGSLLCDEKGNVT-SHLSGL 64
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR--STIDASTLPVAEEGILVERN- 113
F+R+I+L AK G V+V DG PS LK + AR R +A VAE R
Sbjct: 65 FYRSIDLIAK-GVNLVYVFDGMPSTLKKKTIEARISRREKAYEAWQKAVAEGQAEEVRKF 123
Query: 114 -QTFLKCVQECV----ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
Q + +E V ELL G+ + A E EA + + S+G A + D D LFG
Sbjct: 124 AQASTRITKEIVSSAKELLGYMGIWYINAPSEGEAQASYMCSKGIAYAAASQDYDTLLFG 183
Query: 169 AKCVVK--CIRPNTKEPFECYCIS------DIEA---GLGLKRKHLIAMSLLIGNDHDLN 217
+K VV+ + K P + ++ D++A LG+ R+ LI + +L+G D + +
Sbjct: 184 SKKVVRNLTLSGRRKLPGKNVFVNVNPEMVDLDATLGSLGITRQKLIWIGILLGTDFN-D 242
Query: 218 GVQGIGLDTALQFVQNFSEDEILNILH 244
GV+G+G TAL+ V+ S + I +I+
Sbjct: 243 GVKGVGPKTALKAVK--SSNSITDIIE 267
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 107/242 (44%), Gaps = 27/242 (11%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQ 85
+++A+D S I Q + ++ T L + G +V DG P LK Q
Sbjct: 65 RKIAIDASMSIYQFLIVVGRSG------------TEMLTNEAGEVTSYVFDGKPPDLKKQ 112
Query: 86 ARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLELFGMPVLKA 137
RF R L A E E + F K ++C +LL L G+PV++A
Sbjct: 113 ELAKRFSRRADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEA 172
Query: 138 KGEAEALCAQLNSEGYVDACITADSDAFLFGA-KCVVKCIRPNTKE-PFECYCISDIEAG 195
EAEA CA L G V A + D D+ FGA K + + P++++ P + I+ I
Sbjct: 173 PSEAEAQCAALCKSGKVYAVASEDMDSLTFGASKFLRHLMDPSSRKIPVMEFDITKILEE 232
Query: 196 LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG--DIPQ 253
L L I + +L G D+ + ++GIG TAL+ ++ E NIL I IP
Sbjct: 233 LNLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIE--NILENINRERYQIPD 289
Query: 254 YW 255
W
Sbjct: 290 DW 291
>gi|320590957|gb|EFX03398.1| DNA-repair protein rad2 [Grosmannia clavigera kw1407]
Length = 856
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS R+ R L A+E E
Sbjct: 525 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELARRYMRKQEATEGLEEAKETGTAE 583
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC LL+L G+P + A EAEA CA+L G V A + D D
Sbjct: 584 DIEKFSRRTVRVTREHNTECQRLLKLMGIPFIVAPTEAEAQCAELARAGKVYAAASEDMD 643
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F +++ KEP + + + GL ++R+ + + +L+G D+ L+ +
Sbjct: 644 TLCFNTPILLRHLTFSEQRKEPIQEIHLDKLLLGLNMEREQFVDLCILLGCDY-LDPIPK 702
Query: 222 IGLDTALQFVQ 232
+G +TAL+ ++
Sbjct: 703 VGPNTALKLIR 713
>gi|222480031|ref|YP_002566268.1| flap endonuclease-1 [Halorubrum lacusprofundi ATCC 49239]
gi|222452933|gb|ACM57198.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 325
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 28 VAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL---------FAKFGAFPVFVVDGT 78
VAVD W+ ++ T K + + + NL F + PV V DG
Sbjct: 25 VAVDAHNWLYRYLTTTVKWTADETYTTTDGVEVANLIGIVQGLPKFFEHDLIPVMVFDGA 84
Query: 79 PSPLKS-QARLARFYRSTIDASTLPVAEEGILVE------RNQTFLKCVQECV-ELLELF 130
+ LK+ + R R + + E G VE R Q +QE ELL L
Sbjct: 85 VTELKADEVADRREKREQAEERRVAAKERGDAVEAARLEARTQRLTDTIQETTRELLRLL 144
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
+P+++A E EA CA + + G VD + D D LFGA ++ + +K E ++
Sbjct: 145 DVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQL--TSKGDPELMDLA 202
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
LG R+ L+ ++L G D + GV+GIG TA++ V+ +
Sbjct: 203 ATLDDLGFDRQGLVDAAMLCGTDFN-EGVRGIGPKTAVKAVREHGD 247
>gi|255938165|ref|XP_002559853.1| Pc13g14460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584473|emb|CAP92515.1| Pc13g14460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 873
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 43/228 (18%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPL- 82
R R+AVD+S W+ Q + + P LR F+R + L A P+FV DG P
Sbjct: 31 RPIRIAVDISIWLFQVQAGRGGRN---PELRTLFYRLLKLLA-LPVHPLFVYDGRQKPAF 86
Query: 83 -KSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEA 141
+ +A AR Y P+ ++ +L+E F P +A GEA
Sbjct: 87 KRGKAVSARSY------GNAPI----------------IKRSKDLIERFRFPWHEAPGEA 124
Query: 142 EALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEP---------FECYCISDI 192
EA CA+L G VDA ++ D DA +FG+ + +KE CY +
Sbjct: 125 EAECARLQQAGIVDAVMSNDVDALMFGSSLTIMNF---SKESGSGSSSATHVTCYAMGQD 181
Query: 193 --EAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ-NFSED 237
+ + L R +I ++L G D+ +GV G A + + F ED
Sbjct: 182 GHPSNVPLDRPGMILFAMLSGGDYLPSGVPKCGSKLAAEIAKAGFGED 229
>gi|409079272|gb|EKM79634.1| hypothetical protein AGABI1DRAFT_114134 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 423
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 21/253 (8%)
Query: 2 GVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---------SVPKPH 52
G+ G L R + L ++VA+D S I Q A+++ H
Sbjct: 5 GLTGLISQLAPAAIREHEIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLSNDAGETTSH 64
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE-GILVE 111
L F+RTI + G P +V DG P LK RF R A+E G + E
Sbjct: 65 LMGFFYRTIRIVEN-GIKPAYVFDGKPPELKKGVLSKRFERREEAKEEGEEAKETGTVEE 123
Query: 112 RNQTFLKCVQ-------ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
++ + V+ EC+ LL+L G+PV+ A EAEA CA+L G V A + D D
Sbjct: 124 VDKLSRRTVKVTKEHNAECIRLLKLMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDT 183
Query: 165 FLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
F A + + K+P + GL + I + +L+G D+ L ++G+
Sbjct: 184 LTFNAPILYRHLTFSEAKKQPISEINLEAALKGLEMNMSQFIDLCILLGCDY-LEPIRGV 242
Query: 223 GLDTALQFVQNFS 235
G +AL+ ++ +
Sbjct: 243 GPKSALKLIREYG 255
>gi|430813459|emb|CCJ29208.1| unnamed protein product [Pneumocystis jirovecii]
Length = 278
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 22/246 (8%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHLRLTFFRTINLFAKFGAF 70
+D ++VA+D S I Q A++ K HL F+RT+ + G
Sbjct: 23 IDHYFGRKVAIDASMSIYQFLVAVRQRDGQQLMNKTGETTSHLMGIFYRTLRM-CDNGIR 81
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QE 122
P +V DGTP LKS R R A + A+E +E F + +E
Sbjct: 82 PCYVFDGTPPKLKSGELAKRSERREKAAKSYLEAKEADSIEDMNKFSRRTVRMTREHNEE 141
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNT 180
C +LL+L G+P + A EAEA CA L G V A + D D F +++
Sbjct: 142 CKKLLKLMGIPYVDAPCEAEAQCAALAKAGKVYAAASEDMDILCFSTPILLRHLTFSEQK 201
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEI 239
KEP + L + + + + +L+G D+ ++GIG AL+ ++ + S D
Sbjct: 202 KEPITEVNLEKALKELNMPLEQFVDLCILLGCDY-CEPIKGIGPKRALELIREYKSLDAF 260
Query: 240 LNILHK 245
+N K
Sbjct: 261 INFADK 266
>gi|388853942|emb|CCF52440.1| uncharacterized protein [Ustilago hordei]
Length = 844
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 27/151 (17%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+ +D S W+ A + + P+LRL F+R L P+FV DG+ P
Sbjct: 35 RGLRLGIDASLWLFH---AQQSSGGSNPYLRLLFYRLAKLLT-LPVLPLFVFDGSERPTW 90
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ + + + I+ +L+E FG +A+GEAEA
Sbjct: 91 KRGKQVKGKQHAIE-----------------------HPFTQLIEAFGFQWCRARGEAEA 127
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
A LN+EG VDA +T DSDA LFGA+ VV+
Sbjct: 128 ELAWLNTEGVVDAVLTDDSDALLFGAQTVVR 158
>gi|74211217|dbj|BAE37682.1| unnamed protein product [Mus musculus]
Length = 1043
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
QE ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K N
Sbjct: 769 QESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFF-NK 827
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 828 NKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 880
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|321473340|gb|EFX84308.1| hypothetical protein DAPPUDRAFT_47502 [Daphnia pulex]
Length = 374
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 20/224 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRSEGAMLTSADGETTSHLMGIFYRTIRMVDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCVQ-------ECVELLEL 129
P +K R + + L +A + G VE + + V+ EC +LL L
Sbjct: 88 KPPDMKGGELTKRAEKREEASKQLVLATDAGDAVEMEKMNKRLVKVNKGHTDECKQLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D+ FG+ +++ + + K P + +
Sbjct: 148 MGIPYVEAPCEAEAQCAALVKAGKVYATATEDMDSLTFGSNVLLRYLTYSEAKKMPIKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
+ I GL I + +++G D+ + ++GIG A + +
Sbjct: 208 HLDKILDGLSYTMDEFIDLCIMLGCDY-CDTIKGIGAKRAKELI 250
>gi|326913904|ref|XP_003203272.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Meleagris gallopavo]
Length = 1121
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 721 QMFL----ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVY 776
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K K E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 777 KNFFSQNK-YVEYYQYVDFQNQLGLDRSKLINLAYLLGSDY-TEGIPNVGFVTAMEILNE 834
Query: 234 F 234
F
Sbjct: 835 F 835
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ N++ HL LT
Sbjct: 1 MGVQG-LWKLLECTGRPINPEILEGKILAVDISIWLNQAIKGVRDRHGNTIQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R +R + S E +L +TFL
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKEMAISDSRKTAEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|449539943|gb|EMD30944.1| hypothetical protein CERSUDRAFT_19084, partial [Ceriporiopsis
subvermispora B]
Length = 547
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 109/285 (38%), Gaps = 59/285 (20%)
Query: 1 MGVGGKFWDLLKPYARFEGL-------------DFLRDKRVAVDLSYWIVQHETAIKKNS 47
MGV G W +L+P A L D R RV +D S W V A +
Sbjct: 1 MGVSG-LWGVLEPAAEVRSLTHLAVVDGFEANPDGARGFRVGIDASIWFVH---AAYGRA 56
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
P LR FFR + L + PVFV DG P F R G
Sbjct: 57 GENPELRTLFFRCLRLMS-MPFLPVFVFDGPGRP--------TFKR-------------G 94
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
+ +L+ Q E++ FG KA GEAEA A LN G +DA ++ D DA LF
Sbjct: 95 KQISNKNNWLE--QGMREIIRAFGFAWRKAPGEAEAELAYLNRTGIIDAVLSDDVDALLF 152
Query: 168 GAKCVVK----------------CIRPNTKEPFECYCISDI--EAGLGLKRKHLIAMSLL 209
GA VV+ + Y S++ +GL + +I LL
Sbjct: 153 GATMVVRNPSVTLSGNHGVSLKNAAGKDDGNHAATYKSSNLANHPSVGLTQGGMILCGLL 212
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQY 254
G D+ G++G G A ++ D +L + + +P +
Sbjct: 213 CGGDYHEAGLKGCGAAIAHALARSGLGDSLLEAVRTLPRDLLPGF 257
>gi|336366494|gb|EGN94841.1| hypothetical protein SERLA73DRAFT_30636 [Serpula lacrymans var.
lacrymans S7.3]
Length = 592
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 108/286 (37%), Gaps = 71/286 (24%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFL-------------RDKRVAVDLSYWIVQHETAIKKNS 47
MGV G WD+L+P + L L R R+ +D S W H K+
Sbjct: 1 MGVAG-LWDVLRPAGKVRSLTHLAVTEGFELNPDGKRGFRIGIDASIWFF-HAAYGKEGE 58
Query: 48 VPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
P LR FFR L P+FV DG P + G
Sbjct: 59 --NPELRTLFFRCCRLMTT-PFLPLFVFDG---------------------PKRPSVKRG 94
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
V N +L + ++E FG A GEAEA A LN G +DA ++ D D FLF
Sbjct: 95 KRVSGNSHWLTTGMK--NIIEAFGFEWRTAPGEAEAELAYLNRIGVIDAVLSDDVDNFLF 152
Query: 168 GAKCVVK----CIRPNTKEPFE------------CYCISDIEA--GLGLKRKHLIAMSLL 209
GA V++ + N P + Y +D+ + + L R +I + LL
Sbjct: 153 GAMMVIRNPSNTLSGNRANPVKNSDGRDDGNHVVVYKAADLTSHPDIELTRGGVILIGLL 212
Query: 210 IGNDHDLNGVQGIGL------------DTALQFVQNFSEDEILNIL 243
G D+ GV G G DT L+ Q S DE+ L
Sbjct: 213 SGGDYHQAGVTGCGRLIAAGLARCGFGDTLLKASQELSRDELPGFL 258
>gi|255713324|ref|XP_002552944.1| KLTH0D05126p [Lachancea thermotolerans]
gi|317374904|sp|C5DGG4.1|FEN1_LACTC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238934324|emb|CAR22506.1| KLTH0D05126p [Lachancea thermotolerans CBS 6340]
Length = 385
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 24/248 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ + HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGVQLASESGETTSHLMGIFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQ---ARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV----QECVELLEL 129
G P LKS R AR R+T + EE ++ + +K +E +LL L
Sbjct: 88 GKPPVLKSHELSKRSAR--RATTEEKLKEAVEEAEKLKHERRLVKVTPEHNEEAKKLLRL 145
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P ++A EAEA CA+L G V A + D D + +++ KEP
Sbjct: 146 MGLPYVEAPCEAEAQCAELAKAGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEI 205
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L + I + +++G D+ + ++G+G TAL+ ++ E NI+ I
Sbjct: 206 NTEILLQGLELSIEQFIDLGIMLGCDY-CDSIRGVGPVTALKLIKEHKTLE--NIVEYIE 262
Query: 248 NGDIPQYW 255
+G W
Sbjct: 263 SGQANNKW 270
>gi|5020|emb|CAA47291.1| excision repair protein [Schizosaccharomyces pombe]
Length = 1113
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC ELL LFG+P + A EAEA C++L VD +T DSD FLFG V + +
Sbjct: 757 MIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNMF- 815
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + E Y + D++ + + LI ++ L+G+D+ + G+ +G AL+ + F D
Sbjct: 816 NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTM-GLSRVGPVLALEILHEFPGD 873
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W++L+P R L+ L +KR+A+D S WI Q A++ N + H+ + F
Sbjct: 1 MGVSG-LWNILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA-------RLARFYRSTIDAS---TLPVAEEG 107
FR I FG PVFV DG LK Q RL R +T+ A+ L + +
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENATVTANKLLALQMRHQA 118
Query: 108 ILVERN 113
+L+E N
Sbjct: 119 MLLEEN 124
>gi|448425472|ref|ZP_21582802.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|448485392|ref|ZP_21606617.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
gi|445680543|gb|ELZ32986.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|445818046|gb|EMA67913.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
Length = 325
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 26/241 (10%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL--------- 63
P+A EG VAVD W+ ++ T K + + + NL
Sbjct: 16 PFAELEG------SVVAVDAHNWLYRYLTTTVKWTSDETYTTADGVEVANLIGVVQGLPK 69
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL-------PVAEEGILVERNQTF 116
F + PV V DG + LK+ R + E L R Q
Sbjct: 70 FFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRL 129
Query: 117 LKCVQECV-ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+QE ELLEL +P+++A E EA CA + + G VD + D D LFGA ++
Sbjct: 130 TDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ 189
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ +K E ++ + L L R+ L+ +++L G D + GV+GIG TA+ V+
Sbjct: 190 L--TSKGDPELMDLAATLSDLDLDRQGLVDVAMLCGTDFN-EGVRGIGPKTAVTAVKEHG 246
Query: 236 E 236
+
Sbjct: 247 D 247
>gi|134108512|ref|XP_777207.1| hypothetical protein CNBB4370 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259892|gb|EAL22560.1| hypothetical protein CNBB4370 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 893
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 107/268 (39%), Gaps = 76/268 (28%)
Query: 1 MGVGGKFWDLLKPYAR------------FEGLDFLRDKRVAVDLSYWIVQHETAIKKNSV 48
MGV G WDLL+P A E + LR V +D S WI +V
Sbjct: 1 MGVSG-LWDLLRPSAASVTLHTLSKEAFLENKNGLRALTVGIDASIWIFHA-------AV 52
Query: 49 PK----PHLRLTFFRTINLFAKFGAFPVFVVDGTPSPL--KSQARLARFYRSTIDASTLP 102
P+ P LR FF+ I + PVFV DG P ++Q +F
Sbjct: 53 PQHGENPFLRTIFFK-ITALLQHPVLPVFVFDGPNKPAMKRNQKVGGKF----------- 100
Query: 103 VAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
G R++ F + C G+ A GEAEA A +N +G +DA ++ D
Sbjct: 101 ----GTHDYRSKQFKALLDTC-------GLEWWNAPGEAEAELAVMNRQGKIDAILSDDG 149
Query: 163 DAFLFGAKCVVKCIRPN----------------TKEPFECYCISDI--------EAGLGL 198
DA LFGAKC+++ P +K ++ Y +S I + L
Sbjct: 150 DALLFGAKCLIRNSSPTLSGSLASSTKNNPSAGSKRDYDVYTLSRICGEWAKEQDTELTS 209
Query: 199 KRKHLIAM---SLLIGNDHDLNGVQGIG 223
+ +AM +LL G D+ G+ IG
Sbjct: 210 EESCTMAMVWIALLSGGDYTPEGLYSIG 237
>gi|345324376|ref|XP_001513433.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Ornithorhynchus anatinus]
Length = 1520
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 96 IDASTLPVAEEGILVERN------------------QTFLKCVQECVELLELFGMPVLKA 137
I+ L E+ +LVE+N Q FL E ELL LFG+P ++A
Sbjct: 1070 INLEELETLEKDLLVEQNTLQAQKQQQERIASTVTGQMFL----ESQELLRLFGIPFIEA 1125
Query: 138 KGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLG 197
EAEA CA L+ IT DSD +LFGA+ V K N + E Y D LG
Sbjct: 1126 PMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKNFF-NKNKFIEYYQYGDFYNQLG 1184
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILH 244
L R LI ++ L+G+D+ G+ +G TA++ + F + +LH
Sbjct: 1185 LDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEFPGHGLEPLLH 1230
>gi|19112887|ref|NP_596095.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe 972h-]
gi|13432230|sp|P28706.2|RAD13_SCHPO RecName: Full=DNA repair protein rad13
gi|3130034|emb|CAA19011.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe]
Length = 1112
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
++EC ELL LFG+P + A EAEA C++L VD +T DSD FLFG V + +
Sbjct: 756 MIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNMF- 814
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
N + E Y + D++ + + LI ++ L+G+D+ + G+ +G AL+ + F D
Sbjct: 815 NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTM-GLSRVGPVLALEILHEFPGD 872
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G WD+L+P R L+ L +KR+A+D S WI Q A++ N + H+ + F
Sbjct: 1 MGVSG-LWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQA-------RLARFYRSTIDAS---TLPVAEEG 107
FR I FG PVFV DG LK Q RL R +T+ A+ L + +
Sbjct: 59 FRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENATVTANKLLALQMRHQA 118
Query: 108 ILVERN 113
+L+E N
Sbjct: 119 MLLEEN 124
>gi|448504703|ref|ZP_21614044.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|448519062|ref|ZP_21617838.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
gi|445701913|gb|ELZ53885.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|445704078|gb|ELZ55996.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
Length = 325
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 26/241 (10%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL--------- 63
P+A EG VAVD W+ ++ T K + + + NL
Sbjct: 16 PFAELEG------SVVAVDAHNWLYRYLTTTVKWTSDETYTTADGVEVANLIGVVQGLPK 69
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL-------PVAEEGILVERNQTF 116
F + PV V DG + LK+ R + E L R Q
Sbjct: 70 FFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRL 129
Query: 117 LKCVQECV-ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+QE ELLEL +P+++A E EA CA + + G VD + D D LFGA ++
Sbjct: 130 TDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ 189
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ +K E ++ + L L R+ L+ +++L G D + GV+GIG TA+ V+
Sbjct: 190 L--TSKGDPELMDLAATLSDLDLDRQGLVDVAMLCGTDFN-EGVRGIGPKTAVTAVKEHG 246
Query: 236 E 236
+
Sbjct: 247 D 247
>gi|267421|sp|P14629.1|ERCC5_XENLA RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=Xeroderma pigmentosum group
G-complementing protein homolog
gi|312433|emb|CAA49597.1| XP-G related factor [Xenopus laevis]
Length = 1196
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL+LFG+P + A EAEA CA L+ IT DSD +LFGA+ V K K
Sbjct: 804 ESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSQNK 863
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y +DI LGL R LI ++ L+G+D+ G+ +G +A++ + F
Sbjct: 864 H-VEYYQYADIHNQLGLDRSKLINLAYLLGSDY-TEGIPTVGYVSAMEILNEF 914
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R L K +AVD+S W+ Q + N++ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R R+ ++ E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASNDARKTNEKLL----RTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 34/240 (14%)
Query: 26 KRVAVDLSYWIVQHETAIK------------KNSVPKPHLRLTFFRTINLFAKFGAFPVF 73
+R+A+D S I Q A+K + HL F RT+ + + G P++
Sbjct: 29 RRIAIDASMSIYQFIIAMKGFQDGQGMELTNEQGDVTSHLNGLFARTLRMIDE-GIKPIY 87
Query: 74 VVDGTPSPLKSQ---------ARLARFYRSTIDASTLPVAEE----GILVERNQTFLKCV 120
V DG P LK+ A R + DA + E+ + V R Q +
Sbjct: 88 VFDGKPPKLKADELETRRQKAAEAEREFEKAKDAGDDEMMEKMSKRTVRVSREQ-----I 142
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRP 178
+E +LL+L G+PV++A EAEA CA+L +G A T D DA FG+ +++ I
Sbjct: 143 EESKKLLQLMGVPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNISD 202
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
K P + ++ GL + + +L+G D+ + V GIG A + +Q + E
Sbjct: 203 AKKRPIAEIHLDEVLQATGLSMDQFVDLCILLGCDY-VPKVPGIGPQRAWEGIQRYGNIE 261
>gi|148226745|ref|NP_001081629.1| DNA repair protein complementing XP-G cells homolog [Xenopus
laevis]
gi|50416246|gb|AAH77363.1| XPGC protein [Xenopus laevis]
Length = 1197
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL+LFG+P + A EAEA CA L+ IT DSD +LFGA+ V K K
Sbjct: 805 ESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSQNK 864
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y +DI LGL R LI ++ L+G+D+ G+ +G +A++ + F
Sbjct: 865 H-VEYYQYADIHNQLGLDRSKLINLAYLLGSDY-TEGIPTVGYVSAMEILNEF 915
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R L K +AVD+S W+ Q + N++ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R R+ ++ E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASNDARKTSEKLL----RTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|296108985|ref|YP_003615934.1| flap structure-specific endonuclease [methanocaldococcus infernus
ME]
gi|295433799|gb|ADG12970.1| flap structure-specific endonuclease [Methanocaldococcus infernus
ME]
Length = 323
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 22/239 (9%)
Query: 20 LDF--LRDKRVAVDLSYWIVQHETAIK-KNSVPKPHLR--LT------FFRTINLFAKFG 68
+DF L+ K++A+D I Q ++I+ K+ P + R +T F++TI L
Sbjct: 14 IDFNDLKGKKLAIDGFNAIYQFLSSIRLKDGSPLTNKRGGITSAYNGIFYKTIMLLEN-D 72
Query: 69 AFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC-------VQ 121
P++V DG P LK + R R L ++ I ER + F + ++
Sbjct: 73 IIPIWVFDGEPPKLKEKTREKRREEKKKAEEKLREVQDEI--ERARYFKRLSYVNKDMIE 130
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
C LL L G+P ++A E EA + + +G V A ++ D D+ L+GA VV+ + TK
Sbjct: 131 NCKYLLSLMGIPYVQAPSEGEAQASYMAKKGDVWAVVSQDYDSLLYGAPRVVRNL-TTTK 189
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ E ++++ L + LI +++++G D++ G++GIG A + V+ +IL
Sbjct: 190 DELELIELNEVLENLRISLDDLIDIAIMMGTDYNPKGIEGIGFKRAYEMVRARVAKDIL 248
>gi|449272261|gb|EMC82261.1| DNA repair protein complementing XP-G cell [Columba livia]
Length = 1133
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 721 QMFL----ESQELLRLFGIPYIEAPMEAEAQCAVLDLTDQTSGTITDDSDVWLFGARHVY 776
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K K E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 777 KNFFSQNK-YVEYYQYVDFQNQLGLDRSKLINLAYLLGSDY-TEGIPNVGFVTAMEILNE 834
Query: 234 F 234
F
Sbjct: 835 F 835
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK------NSVPKPHLR 54
MGV G W LL+ R + L K +AVD+S W+ Q AIK NSV HL
Sbjct: 1 MGVQG-LWKLLECAGRPINPETLEGKILAVDISIWLNQ---AIKGARDRGGNSVRSAHL- 55
Query: 55 LTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQ 114
LT F + F PVFV DG LK Q R R I S E +L +
Sbjct: 56 LTLFHRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRQRKEIAISDSRKTTEKLL----K 111
Query: 115 TFLK 118
TFLK
Sbjct: 112 TFLK 115
>gi|448496208|ref|ZP_21610310.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
gi|445687084|gb|ELZ39377.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
Length = 325
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 20/226 (8%)
Query: 28 VAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL---------FAKFGAFPVFVVDGT 78
VAVD W+ ++ T K + + + NL F + PV V DG
Sbjct: 25 VAVDAHNWLYRYLTTTVKWTSDEKYTTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGA 84
Query: 79 PSPLKSQARLARFYRSTIDASTL-------PVAEEGILVERNQTFLKCVQECV-ELLELF 130
+ LK+ R + E L R Q +QE ELLEL
Sbjct: 85 VTDLKADEVAERREKREQAEERRAAAEERGDAVEAARLEARTQRLTDTIQETTRELLELL 144
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
+P+++A E EA CA + + G VD + D D LFGA ++ + +K E ++
Sbjct: 145 DVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQL--TSKGDPELMDLA 202
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
LGL R+ L+ +++L G D + GV+G+G TA++ V+ +
Sbjct: 203 ATLGDLGLDRQGLVDVAMLCGTDFN-EGVRGVGPKTAVKAVREHGD 247
>gi|294459945|ref|NP_001170894.1| DNA repair protein complementing XP-G cells [Taeniopygia guttata]
Length = 1176
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFG + V
Sbjct: 773 QMFL----ESQELLRLFGIPYIEAPTEAEAQCALLDLTDQTSGTITDDSDVWLFGGRHVY 828
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K K E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 829 KNFFSQNK-YIEYYQYVDFQNELGLDRSKLINLAYLLGSDY-TEGIPNVGFVTAMEILNE 886
Query: 234 F 234
F
Sbjct: 887 F 887
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN------SVPKPHLR 54
MGV G W LL+ R + L K +AVD+S W+ Q AIK SV HL
Sbjct: 1 MGVQG-LWKLLECTGRPINPETLEGKILAVDISIWLNQ---AIKGARDRGGISVRNAHL- 55
Query: 55 LTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTI 96
LT F + F PVFV DG LK Q R R I
Sbjct: 56 LTLFHRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRQRKEI 97
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 18/144 (12%)
Query: 334 HENWWIKVCSKIALETNFPNDEIVTMYLC----ENNGTFTATDGPSISWGSPMTEMLVDF 389
H+ K ++ L + FPN + YL E+ G+FT WG P E + +F
Sbjct: 916 HDTKVKKKLRELQLYSGFPNPAVAEAYLKPVVDESRGSFT--------WGKPDVEQIREF 967
Query: 390 LVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVV 449
H W + I +LP++ + L++ Q+E +I+ ++
Sbjct: 968 CKDHFGWTRTKIDGILLPVMKQLNLQQTQLRIDSFFRLEQHEKQAIKSQRLLRAVTCLKR 1027
Query: 450 KWKKA------ASAISGVKYTAPV 467
K K+A ASA++ +K P+
Sbjct: 1028 KEKEADNEIQEASAVTEMKLKQPI 1051
>gi|161528211|ref|YP_001582037.1| flap endonuclease-1 [Nitrosopumilus maritimus SCM1]
gi|226700954|sp|A9A4B0.1|FEN_NITMS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|160339512|gb|ABX12599.1| XPG I domain protein [Nitrosopumilus maritimus SCM1]
Length = 340
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL +R +N F G PV+V DG P LK+ A + R + +DA+ + E + +
Sbjct: 57 HLSGLLYRNVN-FLSLGIKPVYVFDGKPPSLKT-AEIERRKQIKMDAT---IKYEKAIAD 111
Query: 112 RNQ----------TFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
N T +K V+E +LL FG+P ++A E EA A L + G A +
Sbjct: 112 GNMEDARKYAQQTTSMKDGMVKESKQLLTYFGIPYIEAPSEGEATAAHLTNTGQAYASAS 171
Query: 160 ADSDAFLFGAKCVVKCIR-------PNTKEPFECYCISDIEA-----GLGLKRKHLIAMS 207
D D+ L GAK +V+ PN K + IE L L R+ LI +
Sbjct: 172 QDFDSILCGAKRLVRNFTNSGRRKIPN-KNTYIDIVPEIIETQKTLDSLELTREELIDVG 230
Query: 208 LLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
+LIG D + NG + +G TAL+ ++ S+ E
Sbjct: 231 ILIGTDFNPNGFERVGPKTALKMIKQHSKLE 261
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 25/253 (9%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFV 74
R + +AVD S I Q + + HL+ RTI + + G PVFV
Sbjct: 27 RGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGEITSHLQGMLNRTIRML-EAGIKPVFV 85
Query: 75 VDGTPSPLKSQARLARFYRSTIDA-----STLPVAEEGILVERNQTFLKCV----QECVE 125
DG P +K + LA+ DA + + +E + + ++ +K +C
Sbjct: 86 FDGEPPEMKKK-ELAKRSLKRDDAIKDLNRAMEIGDENAIEKFSKRTVKVTGRHNDDCKR 144
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEP 183
LL L G+PV++A GEAEA CA L V A + D D FGA+ ++ + K P
Sbjct: 145 LLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLRHLTDLGYKKSP 204
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNI 242
+ +S + LGL I + +L G D+ N ++GIG AL+ + Q+ +E+L
Sbjct: 205 VTEFDVSKVLEELGLTMDQFIDLCILSGCDYCEN-IRGIGGQRALKLIRQHGCIEEVLQN 263
Query: 243 LHKIGNGDIPQYW 255
L++ +P+ W
Sbjct: 264 LNQT-RFSVPEDW 275
>gi|302508023|ref|XP_003015972.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
gi|291179541|gb|EFE35327.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
Length = 821
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 34/230 (14%)
Query: 28 VAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQAR 87
+AVD+S W+ Q + A + P LR FFR L + P+FV DG
Sbjct: 88 LAVDISIWLFQVQAAQGGTN---PALRTLFFRLTRLIS-LPIQPIFVFDGP--------- 134
Query: 88 LARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQ 147
+R P + G LV +N + ++ +L+ELF P A GEAEA CA+
Sbjct: 135 ----HR--------PDYKRGRLVSKNAAAAQ-IELSRKLIELFSYPCHMAPGEAEAECAK 181
Query: 148 LNSEGYVDACITADSDAFLFGAKC-VVKCIRPNTKEPFECYCIS-------DIEAGLGLK 199
L G VDA ++ D DA +FG+K ++ + + K+ + D ++ + L
Sbjct: 182 LQQAGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLD 241
Query: 200 RKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
+ ++ ++LL G D+ GV G A++ + +++L I + +G
Sbjct: 242 TRGMVLVALLSGGDYSPAGVALCGPKLAVEIARAGFGEDLLEITQDLLSG 291
>gi|83773193|dbj|BAE63320.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS R R A+E E
Sbjct: 27 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHEEAKETGTAE 85
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC +LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 86 DVEKFSRRTVRVTRDHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAASEDMD 145
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP +S GL + RK I + +L+G D+ L +
Sbjct: 146 TLCFEAPILLRHLTFSEQRKEPILEIHLSRALEGLDMDRKQFIDLCILLGCDY-LEPIPK 204
Query: 222 IGLDTALQFVQNFS 235
+G +TAL+ ++ F
Sbjct: 205 VGPNTALKLIREFG 218
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 26 KRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ N HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGGQLTNENGETTSHLMGMFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEE-GILVERNQTFLKCVQECVE----LLELFG 131
G P LKS R R L A++ ++ + +K +E E LL L G
Sbjct: 88 GKPPVLKSHELTKRSERRAETEKQLAEAQDIAEKIKHERRLVKVTKEHNEEAKKLLGLMG 147
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCI 189
+P + A EAEA CA+L G V A + D D + +++ KEP +
Sbjct: 148 IPYITAPSEAEAQCAELAKAGVVYAAASEDMDTLCYRVPHLLRHLTFSEAKKEPIHELDV 207
Query: 190 SDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ GL L + I + +++G D+ + ++G+G TAL+ ++ F
Sbjct: 208 EVVLRGLDLTIEQFIDLGIMLGCDY-CDSIRGVGPVTALKLIKEFG 252
>gi|296824092|ref|XP_002850547.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238838101|gb|EEQ27763.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 782
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 34/231 (14%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
R+AVD+S W+ Q + A P LR FFR L + P+FV DG P +
Sbjct: 42 RLAVDVSIWLFQVQAA---QGGANPALRTLFFRLTRLIS-LPIQPIFVFDGPHRPDYKRG 97
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCA 146
RL + +N + ++ +L+ELF P A GEAEA CA
Sbjct: 98 RL---------------------ISKNAAGAQ-IELSRKLIELFSYPCHTAPGEAEAECA 135
Query: 147 QLNSEGYVDACITADSDAFLFGAKC-VVKCIRPNTKEPFECYCIS--DIEAGLG-----L 198
+L G VDA ++ D DA +FG+K ++ + + K+ + D EA G L
Sbjct: 136 KLQRTGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVDLYDTEAEDGDSKVTL 195
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
++ ++LL G D+ GV G A + + +++L I+ + +G
Sbjct: 196 DTGGMVLVALLSGGDYSPAGVPLCGPKLAAEIARAGFGEDLLGIMQGLLSG 246
>gi|397639140|gb|EJK73406.1| hypothetical protein THAOC_04971, partial [Thalassiosira oceanica]
Length = 269
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
G+P +++ EAEA CA L G VD +T DSD F+FG + V K K E Y
Sbjct: 4 GIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKF-VEAYYAR 62
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
DIE LGL + L+A+++L+G D+ +GV+G+G+ ++ ++ F
Sbjct: 63 DIERELGLDKDRLVALAMLLGGDY-TDGVRGVGIVNGMEVLRAF 105
>gi|355754793|gb|EHH58694.1| hypothetical protein EGM_08605, partial [Macaca fascicularis]
Length = 1000
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 713 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAEKQQQERIAATVTGQMF 772
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K
Sbjct: 773 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNF 828
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 829 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 884
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|345569735|gb|EGX52564.1| hypothetical protein AOL_s00007g552 [Arthrobotrys oligospora ATCC
24927]
Length = 390
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 20/227 (8%)
Query: 26 KRVAVDLSYWIVQHETAIK--------KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSEGQVLTSETGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R A+E E + F + +EC LL+L
Sbjct: 88 KPPTLKSGELAKRTARKFEAQEAHEEAKEVGTAEEIEKFSRRTVRATREHNEECKRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P L A EAEA CA L G V A + D D F +++ K+P +
Sbjct: 148 MGIPYLDAPCEAEAQCAILAKSGKVYAAASEDMDTLCFETPILLRHLTFSEQRKQPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ + AGL + R+ I + +L+G D+ + + +G TAL+ ++ +
Sbjct: 208 HLDRVMAGLDMTREQFIDLCILLGCDY-CDTIPKVGPTTALKLIRQY 253
>gi|397601505|gb|EJK57927.1| hypothetical protein THAOC_21987, partial [Thalassiosira oceanica]
Length = 268
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYC 188
L G+P +++ EAEA CA L G VD +T DSD F+FG + V K K E Y
Sbjct: 1 LCGIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKF-VEAYY 59
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
DIE LGL + L+A+++L+G D+ +GV+G+G+ ++ ++ F
Sbjct: 60 ARDIERELGLDKDRLVALAMLLGGDY-TDGVRGVGIVNGMEVLRAF 104
>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
Length = 2004
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ + LL FG+P + A GEAEA A L + DA I+ DSDA +FGA+ + + N K
Sbjct: 1428 QVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVFGAREIYRNFFEN-K 1486
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ E Y S I LGL ++ LI +++L+G D+ L GV+GIG+ A++ ++ + E L
Sbjct: 1487 KSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTL-GVKGIGIVNAVEVLRAYPSLESL 1544
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---KNSVPKPHLRLTF 57
MGV G WDLL+P R L+ K VAVD + W+VQ A+K + +P HL + F
Sbjct: 1 MGVKG-LWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAAHL-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
F + F P+ V DG P LK Q L R
Sbjct: 59 FNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTR 91
>gi|366994432|ref|XP_003676980.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
gi|342302848|emb|CCC70625.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
Length = 379
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 18/223 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ + HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGGQLTNEAGETTSHLMGMFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCVQE----CVELLELFG 131
G P LKS R R L A ++ +++ + +K +E +LLEL G
Sbjct: 88 GKPPTLKSHELSKRTSRREETEKKLAEAVDQAEKMKQERRLVKVSKEHNDEAKKLLELMG 147
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCI 189
+P + A GEAE+ CA+L +G V A + D D + +++ KEP +
Sbjct: 148 IPYVNAPGEAESQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIQEINT 207
Query: 190 SDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ GL L + I + +++G D+ + ++G+G TAL+ ++
Sbjct: 208 EQVLQGLDLTLEQFIDLGIMLGCDY-CDNIRGVGPVTALKLIK 249
>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
Length = 2004
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ + LL FG+P + A GEAEA A L + DA I+ DSDA +FGA+ + + N K
Sbjct: 1428 QVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVFGAREIYRNFFEN-K 1486
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ E Y S I LGL ++ LI +++L+G D+ L GV+GIG+ A++ ++ + E L
Sbjct: 1487 KSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTL-GVKGIGIVNAVEVLRAYPSLESL 1544
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---KNSVPKPHLRLTF 57
MGV G WDLL+P R L+ K VAVD + W+VQ A+K + +P HL + F
Sbjct: 1 MGVKG-LWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAAHL-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
F + F P+ V DG P LK Q L R
Sbjct: 59 FNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTR 91
>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2004
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ + LL FG+P + A GEAEA A L + DA I+ DSDA +FGA+ + + N K
Sbjct: 1428 QVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVFGAREIYRNFFEN-K 1486
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEIL 240
+ E Y S I LGL ++ LI +++L+G D+ L GV+GIG+ A++ ++ + E L
Sbjct: 1487 KSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTL-GVKGIGIVNAVEVLRAYPSLESL 1544
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---KNSVPKPHLRLTF 57
MGV G WDLL+P R L+ K VAVD + W+VQ A+K + +P HL + F
Sbjct: 1 MGVKG-LWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAAHL-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
F + F P+ V DG P LK Q L R
Sbjct: 59 FNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTR 91
>gi|169599851|ref|XP_001793348.1| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
gi|160705335|gb|EAT89482.2| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
Length = 377
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS RF R + + A+E E
Sbjct: 44 HLMGLFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRFQRKSEAHAAAEEAKETGTAE 102
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + +EC LL+L G+P + A EAEA CA L G V A + D D
Sbjct: 103 DVEKFSRRTVRVTREHNEECRRLLKLMGIPFIIAPTEAEAQCATLARGGKVYAAASEDMD 162
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRK--HLIAMSLLIGNDHDLNGV 219
F +++ KEP + + GL ++R+ I + +L+G D+ L+ +
Sbjct: 163 TLTFNTPILLRHLTFSEQRKEPILEIHLDKVLEGLEMEREQPQFIDLCILLGCDY-LDPI 221
Query: 220 QGIGLDTALQFVQN 233
+GIG TAL+ +++
Sbjct: 222 KGIGPSTALKLIRD 235
>gi|118596628|dbj|BAF37974.1| flap endonuclease-1 [Thermoplasma sp. P61]
Length = 328
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 33/219 (15%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RTINL PV+V DG PSPLK++ R + EE I E
Sbjct: 57 HLYGIFYRTINLLEN-KIRPVYVFDGKPSPLKNRTISE---RQLMKEKAKVELEEAI--E 110
Query: 112 RNQTFLK------------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
R + L+ V + +LL+ G+P + A E EA + + + VD I+
Sbjct: 111 RGEEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYIDAPSEGEAQASYMTKKN-VDGVIS 169
Query: 160 ADSDAFLFGAKCVV---------KCIRPNT-KEPFECYCISD-IEAGLGLKRKHLIAMSL 208
D D LFGA+ ++ K R N K + Y I D + + + + LI + +
Sbjct: 170 QDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGI 229
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
L+G D + G++GIG AL ++ E +I +L +IG
Sbjct: 230 LVGTDFN-EGIKGIGAKKALALIK--KEGDIKAVLRRIG 265
>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
Length = 330
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 16 RFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAK 66
R L L K VAVD + Q + I++ + P HL +RT NL +
Sbjct: 12 RETSLGALAGKIVAVDAYNTLYQFLSIIRQPDGTPLRDSSGRITSHLSGLIYRTTNLM-E 70
Query: 67 FGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN---------QTFL 117
G VFV DG PS LK+ AR R +A+ E +L + +
Sbjct: 71 AGLKLVFVFDGKPSELKADVIKARSERR--EAAMQKWEEAKVLFPEDAFKYAQASARIDA 128
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
V + LL L G+P ++A E EA A + G + + D D+ LFGA ++ +
Sbjct: 129 TIVADAKTLLTLMGIPYVQAPSEGEAQAAYMVQNGDAELVSSQDYDSLLFGAPITIRNLS 188
Query: 178 -PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
P K E + +E G+ R+ LI +++L+G D + G++G+G+ AL+ ++
Sbjct: 189 APRKKAKLELVELKALEDTQGIIREELIDIAILVGTDFN-EGIKGVGVKRALKLIKK 244
>gi|71017559|ref|XP_759010.1| hypothetical protein UM02863.1 [Ustilago maydis 521]
gi|46098732|gb|EAK83965.1| hypothetical protein UM02863.1 [Ustilago maydis 521]
Length = 864
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 82/187 (43%), Gaps = 42/187 (22%)
Query: 1 MGVGGKFWDLLKPYARFEGL------------DFLRDKRVAVDLSYWIVQHETAIKKNSV 48
MG+ G W L P A L + LR R+ +D S W+ A++ +
Sbjct: 1 MGIPG-LWAELAPAAETTTLHSYLLTSFVQNRNELRGLRLGIDASLWLFH---ALQSSGG 56
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGI 108
PHLRL F+R L + PVFV DG P + P + G
Sbjct: 57 ANPHLRLLFYRLAKLLS-LPVLPVFVFDG---PKR------------------PTWKRGK 94
Query: 109 LVERNQTFLKCVQECVE-LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
LV Q + ++E L+E FG +A GEAEA A LN +DA +T DSDA LF
Sbjct: 95 LVSGRQ---QVIEEPFSYLIEAFGYQWHRAPGEAEAELAYLNQVNLIDAVLTDDSDALLF 151
Query: 168 GAKCVVK 174
GA V++
Sbjct: 152 GAHVVIR 158
>gi|389593155|ref|XP_003721831.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
gi|122048622|sp|Q4FYU7.1|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
Length = 395
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Query: 26 KRVAVDLSYWIVQHETAIK-------------KNSVPKPHLRLTFFRTINLFAKFGAFPV 72
+R+AVD S I Q A+K K V HL F RT+ + + G P+
Sbjct: 29 RRIAVDASMSIYQFIIAMKGFQDGQGLELTNEKGDVTS-HLNGLFARTLRMIDE-GIKPI 86
Query: 73 FVVDGTPSPLKSQ---------ARLARFYRSTIDASTLPVAEE----GILVERNQTFLKC 119
+V DG P LK+ A R + DA + E+ + V R+Q
Sbjct: 87 YVFDGKPPKLKADELEMRRQKAAEAERAFEKAKDAGDDEMMEKMSKRTVRVSRDQ----- 141
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIR 177
+ E +LL L G+PV++A EAEA CA+L +G A T D DA FG+ +++ I
Sbjct: 142 IDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNIS 201
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
K P + ++ GL + + +L+G D+ + V GIG A + +Q +
Sbjct: 202 DAKKRPIVEIHLDEVLQTTGLSMDQFVDLCILLGCDY-VPKVPGIGPQKAWEGIQRYGSI 260
Query: 238 E 238
E
Sbjct: 261 E 261
>gi|118596598|dbj|BAF37958.1| flap endonuclease-1 [Thermoplasma sp. S02]
Length = 336
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RTINL PV+V DG PSPLK++ R + EE I E
Sbjct: 57 HLYGIFYRTINLLEN-RIRPVYVFDGKPSPLKNRTISE---RQLMKEKAKVELEEAI--E 110
Query: 112 RNQTFLK------------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
R + L+ V + +LL+ G+P + A E EA + + + VD I+
Sbjct: 111 RGEEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKN-VDGVIS 169
Query: 160 ADSDAFLFGAKCVV---------KCIRPNT-KEPFECYCISD-IEAGLGLKRKHLIAMSL 208
D D LFGA+ ++ K R N K + Y I D + + + + LI + +
Sbjct: 170 QDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGI 229
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
L+G D + G++GIG AL ++ E +I ++L +IG
Sbjct: 230 LVGTDFN-EGIKGIGAKKALALIK--KEGDIKSVLKRIG 265
>gi|393908823|gb|EFO27494.2| hypothetical protein LOAG_00986 [Loa loa]
Length = 880
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++C +LL + G+P + A GEAEA C +L G V I+ DSD + FGA V K + N
Sbjct: 497 KDCQDLLRICGIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNMF-NQ 555
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
K + Y + I LGL R + ++LL G D+ +G+ G+G+ AL+ + F+
Sbjct: 556 KRRLQMYSMETIHNQLGLSRWEAVQIALLSGGDY-TSGLGGVGVVAALELISEFA 609
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI----KKNSVPKPHLRLT 56
MG+ G W +L+P A L+ L KR+AVD+S W+ H+ A +++ PHL L
Sbjct: 1 MGIQG-LWQVLEPVAEPVILESLEGKRLAVDISIWL--HQAAYGYSEHQHNARYPHLSLV 57
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPL-KSQARLARFYRSTIDASTLPVAEEGILVERNQT 115
R L + P+FV DG P+ K + R + ++ T+ A++ +L + +
Sbjct: 58 LRRLAKLLF-YKIRPLFVFDGPNVPIFKRKLLRDRQVKRYVEELTMTKAQKHVLQQLASS 116
Query: 116 FLKCVQECV-ELLELF 130
L ++ V EL E+F
Sbjct: 117 QLHGGEQRVNELSEVF 132
>gi|390457518|ref|XP_002742570.2| PREDICTED: DNA repair protein complementing XP-G cells [Callithrix
jacchus]
Length = 1638
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 76 DGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTFL 117
DG P + A + ID L E +L ++N Q FL
Sbjct: 1165 DGEPQEAEKDAEESLHEWQDIDLEELETLESNLLEQQNSLKAQKQQQERIAATVTGQMFL 1224
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K
Sbjct: 1225 ----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF 1280
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1281 -NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 1335
>gi|402902426|ref|XP_003914105.1| PREDICTED: DNA repair protein complementing XP-G cells [Papio anubis]
Length = 1814
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 1342 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAEKQQQERIAATVTGQMF 1401
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K
Sbjct: 1402 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNF 1457
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1458 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 1513
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 34/240 (14%)
Query: 26 KRVAVDLSYWIVQHETAIKK----NSVP--------KPHLRLTFFRTINLFAKFGAFPVF 73
+R+A+D S + Q A+K SV HL FFRT+ + + G P++
Sbjct: 69 RRIAIDASMAVYQFVIAMKGFQEGQSVELTNDAGEVTSHLNGIFFRTLRMIDE-GLRPIY 127
Query: 74 VVDGTPSPLKSQARLARFYRST-------------IDASTLPVAEEGILVERNQTFLKCV 120
V DG P LK+ +R R+ D + +++ + V R Q +
Sbjct: 128 VFDGKPPSLKNSELDSRRQRAEEAKHEYEKAKEEGDDEAMEKMSKRMVRVSREQ-----M 182
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR--P 178
E LL+L G+PV++A EAEA CA+L + A T D DA FGA+ +++ +
Sbjct: 183 DEVKTLLQLMGIPVVQAPSEAEAQCAELVRKDKAWAVGTEDMDALAFGARVMLRHLTYGE 242
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
K P Y + DI G+ + I + +L+G D+ + + GIG A + ++ + E
Sbjct: 243 AKKRPIAEYHLEDILELAGMTMEQFIDLCILLGCDY-VPKIPGIGPHKAWEGIKKYGSME 301
>gi|386876195|ref|ZP_10118324.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
gi|386805976|gb|EIJ65466.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
Length = 340
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 101/223 (45%), Gaps = 35/223 (15%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL---PVA---- 104
HL +R +N F G PV+V DG P LK+ A + R + DA+ VA
Sbjct: 57 HLSGLLYRNVN-FLSIGIKPVYVFDGKPPSLKT-AEIERRKQIKKDATIKYEKAVAAGNM 114
Query: 105 EEGILVERNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E+ + T +K V+E ELL FG+P ++A E EA A L G A + D
Sbjct: 115 EDARKYAQQTTSMKDGMVKESKELLTYFGIPYIEAPSEGEATAAHLTQTGQAYASASQDF 174
Query: 163 DAFLFGAKCVVKCIR-------PNTKEPFECYCISDIEA-----GLGLKRKHLIAMSLLI 210
D+ L GAK +++ PN K + IE LG+ R+ LI + +LI
Sbjct: 175 DSILCGAKRLIRNFTNSGRRKIPN-KNTYIDIVPEIIETQKTLNALGITREELIDVGILI 233
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
G D + +G + IG TA++ ++ S E DIPQ
Sbjct: 234 GTDFNPSGFERIGPKTAMKLIKQHSRLE-----------DIPQ 265
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEE---GILVERN 113
F+RT+ + G PV+V DG P +K + R R L A+E + VE+
Sbjct: 4 FYRTVRMITN-GIKPVYVFDGKPPEMKCEELEKRTERRVEAEKQLAEAKEKGDAMAVEKF 62
Query: 114 QTFLKCV-----QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
+ L V +E +LL L G+PV A EAEA CA+L G V A T D DA FG
Sbjct: 63 ERRLVKVTKDQNEEAKKLLRLMGVPVFDAPCEAEAQCAELVRAGKVFAAATEDMDALAFG 122
Query: 169 AKCVVKCIRPN--TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDT 226
+K +++ + + K P + + + + + + +L+G D+ ++GIG
Sbjct: 123 SKRLLRQLTASEAKKLPVKEINLEQVLKDFEMDMPQFVDLCILLGCDY-TKTIRGIGPKK 181
Query: 227 ALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
A + +Q I N+L I +P+ W
Sbjct: 182 AFELIQKHK--TIENVLENIDTEKYPVPENW 210
>gi|448362827|ref|ZP_21551431.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
gi|445647449|gb|ELZ00423.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
Length = 291
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL--------- 63
P+A EG+ VAVD W+ ++ T K + + NL
Sbjct: 16 PFADIEGV-------VAVDAHNWLYRYLTTTVKWTNSAKYTTADGTEVANLVGIVQGLPK 68
Query: 64 FAKFGAFPVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEG------ILVERNQTF 116
F + PV V DG PS LK + R R T + EEG L R Q
Sbjct: 69 FFENDVVPVMVFDGGPSELKEDEIESRRDQRRTYEEQLETAREEGDEVAIAQLESRTQRL 128
Query: 117 LKCVQECV-ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+QE ELLEL +P+++A E EA A + G D + D DA LFGA ++
Sbjct: 129 TPTIQETSRELLELLDVPIVEAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQ 188
Query: 176 IRPNTKEPFECYCISDIEAGL---GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+ + +P D++A L GL + LI ++LIG D + GV GIG TA+
Sbjct: 189 L-TSKGDPERM----DLQATLDHHGLTLEQLIDAAILIGTDFN-EGVSGIGPKTAI 238
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 32/265 (12%)
Query: 3 VGGKFWDLLKPYARFEGLDF--LRDKRVAVDLSYWIVQHETAIKK---------NSVPKP 51
+G KF D++ P E + F L K VA+D + I Q ++I++ N
Sbjct: 1 MGVKFKDIVTP----ENIKFQDLESKIVALDAANVIYQFLSSIRQVDGTPLMDENKNITS 56
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLP---VAEEGI 108
H +RT +L K G P+++ DG LK + R R + S EEG
Sbjct: 57 HFSGILYRTSSLIEK-GIKPIYIFDGVSDALKKDTQDKR--REVKEESQKKWDKALEEGN 113
Query: 109 LVERNQTFLK-------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
L E + ++ ++ +LLE+ G+P ++A GE EA + + G + D
Sbjct: 114 LEEARKYAVRSSRMSRDIIEGSKKLLEILGVPYIQALGEGEAQASYMVENGDAWCVGSQD 173
Query: 162 SDAFLFGAKCVVKCIR-PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
D LFGA +V+ + K E + + + + R+ L+ +++L+G D + GV+
Sbjct: 174 YDCILFGATRMVRNLTITGGKANLELITLKKVLENMEITREQLVDIAILVGTDFN-RGVK 232
Query: 221 GIGLDTALQFVQNFSEDEILNILHK 245
G+G T L+ ++ +I N++ K
Sbjct: 233 GVGAKTGLKLIKKHG--DIFNVIEK 255
>gi|312067080|ref|XP_003136574.1| hypothetical protein LOAG_00986 [Loa loa]
Length = 882
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++C +LL + G+P + A GEAEA C +L G V I+ DSD + FGA V K + N
Sbjct: 499 KDCQDLLRICGIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNMF-NQ 557
Query: 181 KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
K + Y + I LGL R + ++LL G D+ +G+ G+G+ AL+ + F+
Sbjct: 558 KRRLQMYSMETIHNQLGLSRWEAVQIALLSGGDY-TSGLGGVGVVAALELISEFA 611
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI----KKNSVPKPHLRLT 56
MG+ G W +L+P A L+ L KR+AVD+S W+ H+ A +++ PHL L
Sbjct: 1 MGIQG-LWQVLEPVAEPVILESLEGKRLAVDISIWL--HQAAYGYSEHQHNARYPHLSLV 57
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPL-KSQARLARFYRSTIDASTLPVAEEGILVERNQT 115
R L + P+FV DG P+ K + R + ++ T+ A++ +L + +
Sbjct: 58 LRRLAKLLF-YKIRPLFVFDGPNVPIFKRKLLRDRQVKRYVEELTMTKAQKHVLQQLASS 116
Query: 116 FLKCVQECV-ELLELF 130
L ++ V EL E+F
Sbjct: 117 QLHGGEQRVNELSEVF 132
>gi|77736641|ref|NP_001029995.1| XPG-complementing protein [Gallus gallus]
gi|71725078|dbj|BAE16755.1| XPG [Gallus gallus]
Length = 1118
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 721 QMFL----ESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVY 776
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K K E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 777 KNFFSRNK-YVEYYQYIDFQNQLGLDRSKLINLAYLLGSDY-TEGIPNVGFVTAMEILNE 834
Query: 234 F 234
F
Sbjct: 835 F 835
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ N++ HL LT
Sbjct: 1 MGVQG-LWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R +R + E +L +TFL
Sbjct: 59 FNRLCKLLFFRIRPVFVFDGEAPLLKRQTLAKRRHRKELAVIDSRKTAEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 26 KRVAVDLSYWIVQHETAIKK----NSVP--------KPHLRLTFFRTINLFAKFGAFPVF 73
+R+A+D S + Q A+K SV HL FFRT+ + + G P++
Sbjct: 29 RRIAIDASMAVYQFVIAMKGFQEGQSVELTNEAGDVTSHLSGIFFRTLRMIDE-GLRPIY 87
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG------------ILVERNQTFLKCV 120
V DG P LK+ +R R+ A EEG + V R+Q +
Sbjct: 88 VFDGKPPTLKASELESRRQRAEDAKHEFEKAKEEGDDEAMEKMSKRMVRVGRDQ-----M 142
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR--P 178
+E LL L G+PV++A EAEA CA+L + A T D DA FG++ +++ +
Sbjct: 143 EEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAWAVGTEDMDALAFGSRVMLRHLTYGE 202
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
K P Y + +I G + I + +L+G D+ + + GIG A + ++ +
Sbjct: 203 AKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCDY-VPRISGIGPHKAWEGIKKYG 258
>gi|193084327|gb|ACF09984.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-49-D2]
Length = 341
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLARFYRSTIDASTLPVA---E 105
HL R +N F G PV+V DG P LK+ Q R +TI + E
Sbjct: 57 HLTGLLHRNVN-FLSIGIKPVYVFDGKPPSLKTAEIQRRKLGKKEATIKYEKAKASGDFE 115
Query: 106 EGILVERNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ T ++ V++ LL+LFG+P ++A + EA A +N G A + D D
Sbjct: 116 SARKYAQQTTSMQDTMVEDSKHLLDLFGIPYIQANADGEATAAHMNKTGKAYAVASQDYD 175
Query: 164 AFLFGAKCVV---------KCIRPNTKEPFECYCISDIEA--GLGLKRKHLIAMSLLIGN 212
+ LFGAK +V K NT E IS ++ LG+ + +I + +LIG
Sbjct: 176 SILFGAKKLVRNFTNSGRRKLPNRNTYVDIEPEIISYQKSLDALGITGEQIIDIGILIGT 235
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDE 238
D + +G IG TAL+ ++ + + E
Sbjct: 236 DFNPDGFDRIGPKTALKMIKEYGKLE 261
>gi|407851500|gb|EKG05394.1| hypothetical protein TCSYLVIO_003532 [Trypanosoma cruzi]
Length = 393
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 34/255 (13%)
Query: 26 KRVAVDLSYWIVQHETAIK------------KNSVPKPHLRLTFFRTINLFAKFGAFPVF 73
+R+A+D S I Q A+K + HL F RT+ + + G P++
Sbjct: 29 RRIAIDASMTIYQFIIAMKGFQDGQGMELTNEAGEVTSHLNGLFARTLRMVDE-GLRPIY 87
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG------------ILVERNQTFLKCV 120
V DG P LK+ R R+ A EEG + V R Q +
Sbjct: 88 VFDGKPPTLKASELQERRQRAEEAQQLFDTAKEEGNDELMEKMSKRTVRVSREQ-----L 142
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RP 178
+E +LL+L G+PV++A EAEA CA+L + A T D DA FGA +++ +
Sbjct: 143 EEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVATEDMDALTFGAPVMLRHLTYSE 202
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
K P + + +I GL I + +L+G D+ + + GIG A + ++ + E
Sbjct: 203 AKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDY-VPKISGIGPQKAWEGIKKHGDIE 261
Query: 239 ILNILHKIGNGDIPQ 253
L G +P+
Sbjct: 262 TLLQSLDAGRHSVPE 276
>gi|169606572|ref|XP_001796706.1| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
gi|160707030|gb|EAT86160.2| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
Length = 739
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 30/184 (16%)
Query: 51 PHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILV 110
P LR ++R + L A PVFV DG P R R+ + +++P
Sbjct: 8 PALRTFYYRLLRLIA-LSIHPVFVFDGPNKP-----PFKRNKRTGPNVASIP-------- 53
Query: 111 ERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
FL +LL+ FG P+ A GEAEA CA L EG VDA ++ D D +FG+
Sbjct: 54 ----EFL-----AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSG 104
Query: 171 CVVKCIRP----NTKEPFECYCISDIE---AGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
++ P + K P +E GL R +I ++L+ G D+ G+ G G
Sbjct: 105 ITIRNWSPEKGSSGKTPTHVNVYDAVETKSGPSGLDRDGMILVALMSGGDYVPEGIPGCG 164
Query: 224 LDTA 227
TA
Sbjct: 165 PKTA 168
>gi|392575628|gb|EIW68761.1| hypothetical protein TREMEDRAFT_69192 [Tremella mesenterica DSM
1558]
Length = 437
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 21/226 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S I Q A+++ HL F+RTI + + G P ++ D
Sbjct: 29 RKVAIDASMSIYQFLIAVRQQDGQMLMNESGDVTSHLMGFFYRTIRMVDQ-GIKPCYIFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE------RNQTFL--KCVQECVELLE 128
G P LK RF R A+E VE R Q + + +EC +LL
Sbjct: 88 GKPPELKGGVLAKRFARREEAKEGEEEAKETGTVEDIDKLARRQVRVTREHNEECKKLLA 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+PV+ A GEAEA CA+L G V A + D D F +++ K P
Sbjct: 148 LMGIPVVTAPGEAEAQCAELARAGKVYAAGSEDMDTLTFSTPILLRHLTFSEAKKMPISE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
++ + LG+ I + +L+G D+ L +GIG TAL+ ++
Sbjct: 208 IHLNIVLEELGMTMDQFIELCILLGCDY-LEPCKGIGPKTALKLLR 252
>gi|118596596|dbj|BAF37957.1| flap endonuclease-1 [Thermoplasma sp. S01]
Length = 336
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 33/219 (15%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RTINL PV+V DG PSPLK++ R + EE I E
Sbjct: 57 HLYGIFYRTINLLEN-KIRPVYVFDGKPSPLKNRTISE---RQLMKEKAKVELEEAI--E 110
Query: 112 RNQTFLK------------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
R + L+ V + +LL+ G+P + A E EA + + + VD I+
Sbjct: 111 RGEEDLRQYYSRINYITPQIVNDTKKLLDYMGIPYVDAPSEGEAQASYMTRKN-VDGVIS 169
Query: 160 ADSDAFLFGAKCVV---------KCIRPNT-KEPFECYCISD-IEAGLGLKRKHLIAMSL 208
D D LFGA+ V+ K R N K + Y I D + + + + LI + +
Sbjct: 170 QDYDCLLFGARKVLRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGI 229
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
L+G D + G++GIG AL ++ E +I +L +IG
Sbjct: 230 LVGTDFN-EGIKGIGAKKALALIK--KEGDIKAVLRRIG 265
>gi|171690042|ref|XP_001909953.1| hypothetical protein [Podospora anserina S mat+]
gi|170944976|emb|CAP71087.1| unnamed protein product [Podospora anserina S mat+]
Length = 884
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 28/209 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D+S W Q + A ++ P +R FFR + L + P+FV DG P
Sbjct: 33 RPFRLAIDISIWQFQIQAARGGSN---PAIRTLFFRLVRLLS-LAIQPLFVFDGPNKPA- 87
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
F R+ R + +++LFG + A GEAEA
Sbjct: 88 -------FKRNKRAGG-----------PRGAGHMVAASMAKRMIKLFGFAIHDAPGEAEA 129
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKC----IRPNTKEPFECYCISDIEAG-LGL 198
CA L EG VDA ++ D D +FG ++ + N Y +I G GL
Sbjct: 130 ECAFLQREGVVDAVLSEDVDTIMFGCGKTLRSWTAEGKGNVPTHITLYDAEEIAKGESGL 189
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
R+ ++ ++L+ G D+ GV G G+ A
Sbjct: 190 DREGMVLVALMSGGDYLPEGVPGCGIKVA 218
>gi|367003685|ref|XP_003686576.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
gi|357524877|emb|CCE64142.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
Length = 380
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 22/250 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ N HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGGQLTNENGETTSHLMGIFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCVQE----CVELLELFG 131
G P LKS R R L A E+ ++++ + +K +E LLEL G
Sbjct: 88 GKPPVLKSHELTKRTARRVETEKKLAEAVEQADILKQEKRLVKVSKEHNDEAKHLLELMG 147
Query: 132 MPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECYCI 189
+P + A EAE+ CA+L +G V A + D D + +++ KEP
Sbjct: 148 IPYVNAPCEAESQCAELAKKGKVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEINT 207
Query: 190 SDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKIGN 248
+ GL L + I + +++G D+ ++G+G TAL+ + ++ S ++I+ + +
Sbjct: 208 ETVLEGLELTLEQFIDLGIMLGCDY-CESIRGVGPVTALKLIKEHGSLEKIIEFVESPDS 266
Query: 249 GD---IPQYW 255
IP+ W
Sbjct: 267 NSKWKIPENW 276
>gi|440470255|gb|ELQ39332.1| DNA-repair protein rad2 [Magnaporthe oryzae Y34]
gi|440487391|gb|ELQ67182.1| DNA-repair protein rad2 [Magnaporthe oryzae P131]
Length = 416
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 114/274 (41%), Gaps = 48/274 (17%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ N HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSNGEMLTNEDGQTTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R+ R L A E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELARRYQRKQEALEGLEEARETGTAEDVEKFSRRTVRVTREHNEECRQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHL----------------------IAMSLLIGNDHDLNGVQGIGLD 225
+ + GL + RK + + + +L+G D+ L+ + +G
Sbjct: 208 HVDKVLEGLDMDRKQVRCTSDMVNVYQERPADSFNKQFVDLCILLGCDY-LDPIPKVGPS 266
Query: 226 TALQFVQNFSEDEILNILHKIGNGD----IPQYW 255
TAL+ ++ E I+ K+ G+ +P+ W
Sbjct: 267 TALKLIREHGSLE--TIVEKMKKGELKYTVPEDW 298
>gi|403272924|ref|XP_003928284.1| PREDICTED: DNA repair protein complementing XP-G cells [Saimiri
boliviensis boliviensis]
Length = 1638
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 76 DGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTFL 117
DG P + A + ID L E +L ++N Q FL
Sbjct: 1164 DGEPQEAEKDAEESLHEWQDIDLEELETLESNLLEQQNSLKAQKQQQERIAATVTGQMFL 1223
Query: 118 KCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIR 177
E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K
Sbjct: 1224 ----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF 1279
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1280 -NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 1334
>gi|393240015|gb|EJD47543.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 598
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 110/277 (39%), Gaps = 57/277 (20%)
Query: 1 MGVGGKFWDLLKPYARFEG------------LDFLRDKRVAVDLSYWIVQHETAIKKNSV 48
MGV G W +L+P A + LD R R+ +D S W E + +
Sbjct: 1 MGVKG-LWKVLRPAASTQSVTRLAVDGFNTNLDGNRGYRIGIDASIWFGHTEKLKNRQRL 59
Query: 49 PKPH-LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEG 107
K H LR FFR +L + P+FV DG P + ++ S
Sbjct: 60 GKNHALRTLFFRCTHLL-EVPLLPLFVFDGKDRPSVKRGKVVHAKSS------------- 105
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
K ++ EL++ FG A GEAEA A LN+ G +DA T D DAF+F
Sbjct: 106 ----------KLQKKMQELVDAFGFQWHLAPGEAEAELAYLNTVGVIDAIWTDDVDAFIF 155
Query: 168 GAKCVVK----CIRPNTKEPFECYCISD--------------IEAGLGLKRKHLIAMSLL 209
GA +++ + N +P D + L R LI ++LL
Sbjct: 156 GATTLIRNPSNTLSSNAAKPILNAAGRDDGKHVAVLTAHDLASHGDVQLSRGGLILIALL 215
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
G D++ GV IG+ A + + +LN + +
Sbjct: 216 RGGDYN-KGVPQIGMQIAHALARCGFGESLLNAVQSL 251
>gi|378754698|gb|EHY64727.1| flap endonuclease 1-B [Nematocida sp. 1 ERTm2]
Length = 342
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 114/265 (43%), Gaps = 22/265 (8%)
Query: 6 KFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIK--------KNSVPKPHL 53
K +LLK A R ++ R +VA+D S + Q AI+ KN HL
Sbjct: 5 KLTELLKEKAPKAIRSTQIEKYRGWKVAIDASMILYQSLVAIRYGMDSLKNKNGETTAHL 64
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE-EGILVER 112
F++TINL K G PV++ DG LK + R R L AE E ++
Sbjct: 65 YGIFYKTINLIEK-GIVPVYIFDGLAPELKENILVERRARKEQAERDLEQAETESEKMKH 123
Query: 113 NQTFLKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
+ ++ + VE LL G+P + A EAE CA LN V+ ++ D D+ FG
Sbjct: 124 AKRTVRATKYHVESAQALLSAMGVPYMTAPNEAEGFCAALNIANAVNGVVSEDMDSLAFG 183
Query: 169 AKCVVKCIRPN-TKEPFECYCIS--DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLD 225
K +++ P K+ IS ++ GL + I M +L+G D+ +G+G
Sbjct: 184 GKVLLRNFFPALMKKKMAVMEISLDEVLKQTGLDQAEFIDMCILLGCDY-CQKPKGLGPK 242
Query: 226 TALQFVQNFSEDEILNILHKIGNGD 250
VQ E + KI G+
Sbjct: 243 KVYDLVQEHRSIEKIVESGKIQPGE 267
>gi|344303968|gb|EGW34217.1| hypothetical protein SPAPADRAFT_148774 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 125/271 (46%), Gaps = 33/271 (12%)
Query: 1 MGVGGKFWDLLK-----PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK----- 50
MGV G L+K Y F+ L L ++VA+D S + Q A++++ +
Sbjct: 1 MGVKG-LNQLIKEHSPSAYKEFQ-LKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNED 58
Query: 51 ----PHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLARFYRSTIDASTLPV 103
HL F+RTI L PV+V DG P LK + RL R R +
Sbjct: 59 GETTSHLSGLFYRTIRLVEN-NIKPVYVFDGKPPVLKGGELEKRLQR--REEAQKQMDSI 115
Query: 104 AEEGILVERNQTFLKCVQ-------ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDA 156
+EG + E + + V+ E +LLEL G+P++ A EAEA CA+L G V A
Sbjct: 116 KDEGTVAEVMKFEKRLVRVSRQQNDEARKLLELMGIPIVNAPCEAEAQCAELARGGKVFA 175
Query: 157 CITADSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
+ D D + +++ K P + S+ AGL + ++ I + +L+G D+
Sbjct: 176 AASEDMDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAIAGLDMTKEQFIDLCILLGCDY 235
Query: 215 DLNGVQGIGLDTALQFVQNF-SEDEILNILH 244
++G+G TA + ++ S D+I+ ++
Sbjct: 236 -CETIKGVGPVTAFKLIKEHGSLDKIVEYIN 265
>gi|352681676|ref|YP_004892200.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
gi|350274475|emb|CCC81120.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
Length = 346
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR-FYRSTIDASTLPVAEEGILV 110
HL F+RTINL + G PV+V DG P LK + AR + A EG
Sbjct: 61 HLNGLFYRTINLV-EAGIRPVYVFDGKPPELKRREIEARRAAKEKAREQMAKAAAEGKTE 119
Query: 111 ERNQTFLKCV-------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
E + + V ++ LL G+P ++A E EA A + ++G + D D
Sbjct: 120 EVAKYAKRVVYITDSMAEDAKALLTAMGIPWVQAPSEGEAQAAHMAAKGSAWGAGSQDYD 179
Query: 164 AFLFGAKCVVKCIRPNTKE---------PFECYCISDIEAGLGLK-RKHLIAMSLLIGND 213
+ LFGA +V+ + +++ P E + L LK R+ LI +++L+G D
Sbjct: 180 SLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEVIELESALRALKLKSREQLIDLAILLGTD 239
Query: 214 HDLNGVQGIGLDTALQFVQN 233
++ +GV G+G AL+ +Q
Sbjct: 240 YNPDGVPGVGPQRALKIIQE 259
>gi|402580560|gb|EJW74510.1| hypothetical protein WUBG_14580, partial [Wuchereria bancrofti]
Length = 266
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 22/239 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VAVD S + Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAVDASMCLYQFLIAVRQDGSQLQTESGETTSHLLGMFYRTIRMIDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDA----STLPVAEEGILVERNQTFLKCVQECVE----LLEL 129
P +K+ R R T + + +E + + + +K +E E L+ L
Sbjct: 88 KPPQMKASELEKRTERRTEAEKQRNDAVELGDEASVNKFERRLVKVTKEQNEEAKRLVTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P+L A EAEA CA L G V A ++ D DA FG+ +++ + + K P +
Sbjct: 148 MGIPILDAPCEAEAQCAALAKAGKVFATVSEDMDALTFGSPILLRQMIASEAKKLPVKEM 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
++ + G+ + + +L+G D+ ++ ++GIG A + ++ + + I N+L I
Sbjct: 208 NLNQVLKDFGMNMGQFVDLCILLGCDY-VSTIRGIGPKKAFELIKKY--ECIENVLEAI 263
>gi|358379429|gb|EHK17109.1| hypothetical protein TRIVIDRAFT_195114 [Trichoderma virens Gv29-8]
Length = 787
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 32/209 (15%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D++ W Q++ A + P +R F+R + L P+FV DG P
Sbjct: 31 RPYRLAIDIAIWQFQNQAARGGTN---PAIRTLFYRLVRLLGT-PIQPIFVFDGPNKP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
+ R RS R F L+ LFG V A GEAEA
Sbjct: 85 ---KFKRHRRSG----------------RGDGF--AAAHAKRLIRLFGFVVHDAPGEAEA 123
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK--EP--FECYCISDIE-AGLGL 198
CA L G VDA ++ D D +FG ++ K +P Y + D+ A LGL
Sbjct: 124 ECAFLQKNGIVDAVLSEDVDTIMFGCTRTLRNWSAEGKAGKPTHVSMYDVEDLNMANLGL 183
Query: 199 KRKHLIAMSLLIGNDHDLNGVQGIGLDTA 227
R+ ++ ++L+ G D+ GV G G A
Sbjct: 184 DREGMVLVALMSGGDYIPEGVPGCGPKVA 212
>gi|355701088|gb|EHH29109.1| hypothetical protein EGK_09444 [Macaca mulatta]
Length = 1194
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 713 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAEKQQQERIAATVTGQMF 772
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K
Sbjct: 773 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNF 828
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 829 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 884
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|195559286|ref|XP_002077347.1| GD20054 [Drosophila simulans]
gi|194202449|gb|EDX16025.1| GD20054 [Drosophila simulans]
Length = 259
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+C E L LFG+P + A EAEA CA LN+ IT DSD +LFG + V K K
Sbjct: 12 DCQEQLRLFGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNFFAQNK 71
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + IE R LI ++ L+G+D+ G+ GIG TAL+ + +FS
Sbjct: 72 HVME-FRAEQIEQTFNCNRGKLIQLACLVGSDYT-TGIHGIGAVTALEILASFS 123
>gi|193084162|gb|ACF09827.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-207-H3]
Length = 341
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 35/244 (14%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHLRLTFFRTINLFAKFGAF 70
L+ K +A+D I Q T I+ + HL R IN F G
Sbjct: 16 LESFSSKIIAIDAYNAIYQFLTIIRGPEGLHLTDSRGMVTSHLTGLLHRNIN-FLSMGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDAST-LPVAEEGILVERNQTFLK--------CVQ 121
PV+V DG P LK+ A + R I+A+ A+ E + + + V+
Sbjct: 75 PVYVFDGRPPSLKT-AEIQRRKLGKIEATIKYEKAKASGDFESARKYAQQTTSMQETMVE 133
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ LL+LFG+P ++AK + EA A +N G A + D D+ LFGA +V+ + +
Sbjct: 134 DSKHLLDLFGIPYIQAKADGEATAAHMNKTGKAYAVASQDYDSILFGATKLVRNFTNSGR 193
Query: 182 EPF---ECYCISDIEA----------GLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
Y DIE LG+ + +I + +L+G D + +G + IG TAL
Sbjct: 194 RKLPNRNTYI--DIEPEIINYQKSLDALGITGEQIIDIGILVGTDFNPDGFERIGPKTAL 251
Query: 229 QFVQ 232
+ ++
Sbjct: 252 KMIK 255
>gi|16082069|ref|NP_394495.1| flap endonuclease-1 [Thermoplasma acidophilum DSM 1728]
gi|28380022|sp|Q9HJD4.1|FEN_THEAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|10640350|emb|CAC12164.1| DNA repair protein RAD2 related protein [Thermoplasma acidophilum]
Length = 336
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 33/219 (15%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RTINL PV+V DG PSPLK++ R + EE I E
Sbjct: 57 HLYGIFYRTINLLEN-RIRPVYVFDGKPSPLKNRTISE---RQMMKEKAKAELEEAI--E 110
Query: 112 RNQTFLK------------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
R + L+ V + +LL+ G+P + A E EA + + + VD I+
Sbjct: 111 RGEEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKN-VDGVIS 169
Query: 160 ADSDAFLFGAKCVV---------KCIRPNT-KEPFECYCISD-IEAGLGLKRKHLIAMSL 208
D D LFGA+ ++ K R N K + Y I D + + + + LI + +
Sbjct: 170 QDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGI 229
Query: 209 LIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
L+G D + G++GIG AL ++ E +I ++L IG
Sbjct: 230 LVGTDFN-EGIKGIGAKKALALIK--KEGDIKSVLKHIG 265
>gi|401409161|ref|XP_003884029.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
Length = 1924
Score = 75.5 bits (184), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ V LL FG+P + A GEAEA A ++ DA I+ DSDA +FGA+ + + N K
Sbjct: 1434 QVVALLRAFGVPFVTAPGEAEATAAYFTAQNLADAVISDDSDALVFGAREIYRNFFEN-K 1492
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
+ E Y S I LGL ++ LI +++L+G D+ L GV+GIG+ A++ ++ +
Sbjct: 1493 KSVEMYEASFIAHKLGLDQQQLILLAMLLGCDYTL-GVKGIGIVNAVEVLRAY 1544
Score = 55.1 bits (131), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---KNSVPKPHLRLTF 57
MGV G WDLL P R L+ K VAVD + W+VQ A+K + +P HL + F
Sbjct: 1 MGVKG-LWDLLAPAGRRVAAGNLKGKIVAVDAAIWLVQFLHAMKLPDGSPMPAAHL-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLAR 90
F + F P+ V DG P LK Q LAR
Sbjct: 59 FNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLAR 91
>gi|426196176|gb|EKV46105.1| hypothetical protein AGABI2DRAFT_193982 [Agaricus bisporus var.
bisporus H97]
Length = 429
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 21/229 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKN---------SVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S I Q A+++ HL F+RTI + G P +V D
Sbjct: 29 RKVAIDASMSIYQFLIAVRQKDGEMLSNDAGETTSHLMGFFYRTIRIVEN-GIKPAYVFD 87
Query: 77 GTPSPLKSQARLARFYRSTIDASTLPVAEE-GILVERNQTFLKCVQ-------ECVELLE 128
G P LK RF R A+E G + E ++ + V+ EC+ LL+
Sbjct: 88 GKPPDLKKGVLSKRFERREEAKEEGEEAKETGTVEEVDKLSRRTVKVTKEHNAECIRLLK 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+PV+ A EAEA CA+L G V A + D D F A + + K+P
Sbjct: 148 LMGIPVVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPILYRHLTFSEAKKQPISE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ GL + I + +L+G D+ L ++G+G +AL+ ++ +
Sbjct: 208 INLEVALKGLEMNMSQFIDLCILLGCDY-LEPIRGVGPKSALKLIREYG 255
>gi|380810474|gb|AFE77112.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
gi|383416485|gb|AFH31456.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
Length = 1182
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 710 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAEKQQQERIAATVTGQMF 769
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K
Sbjct: 770 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNF 825
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 826 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 881
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F PVFV DG LK Q R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPVFVFDGDAPLLKKQTLAKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
gi|317374881|sp|B9WLQ5.1|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
Length = 372
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 32/267 (11%)
Query: 14 YARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLF 64
Y F+ L L ++VA+D S + Q A++++ + HL F+RTI +
Sbjct: 18 YKEFQ-LKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGETTSHLSGMFYRTIKMV 76
Query: 65 AKFGAFPVFVVDGTPSPLKS---QARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV- 120
PV+V DG P LK + RL R R + +EG + E + + V
Sbjct: 77 EN-NIKPVYVFDGKPPVLKGGELEKRLLR--REEAQKQKTALGDEGTVEEVLKFEKRLVR 133
Query: 121 ------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK 174
+E +LLEL G+P + A EAEA CA+L G V A + D D + +++
Sbjct: 134 VTREQNEEAKKLLELMGIPCVDAPCEAEAQCAELARGGKVYAAASEDMDTLCYEPPFLLR 193
Query: 175 --CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
K P + D AGL + ++ I + +L+G D+ ++GIG TA + ++
Sbjct: 194 HLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGCDY-CESIKGIGQATAFKLIK 252
Query: 233 NFSEDEILNILHKIGNGD----IPQYW 255
+ NI+ I N +P+ W
Sbjct: 253 EHG--SLDNIVEWIKNNKTKYTLPENW 277
>gi|62088204|dbj|BAD92549.1| DNA-repair protein complementing XP-G cells variant [Homo sapiens]
Length = 1611
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 1135 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMF 1194
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V +
Sbjct: 1195 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF 1250
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1251 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 1306
>gi|452983877|gb|EME83635.1| hypothetical protein MYCFIDRAFT_154172 [Pseudocercospora fijiensis
CIRAD86]
Length = 788
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 27 RVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA 86
R+A+D+S W+ Q + A K S P LR TF+ + P+FV DG PL
Sbjct: 34 RLAIDISIWLFQIQ-AGKGGS--NPALR-TFYYRLLRLLTLNIHPLFVFDGPNKPL---- 85
Query: 87 RLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCA 146
F R+ V G+ V FL +LL+ F P A GEAEA CA
Sbjct: 86 ----FKRNKK------VGGPGVRVASVPEFL-----AKQLLKQFAFPWHVAPGEAEAECA 130
Query: 147 QLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEP--FECYCISDIEAGLGLKRKH 202
L EG VDA ++ D D +FG+ ++ K P Y ++ + GL R+
Sbjct: 131 LLQREGIVDAVLSEDVDTLMFGSGTTLRNWTAESTNKTPTHVNVYRAAETKEKSGLDREG 190
Query: 203 LIAMSLLIGNDHDLNGVQGIG 223
+I ++L+ G D+ G+ G G
Sbjct: 191 MILVALMSGGDYITEGIPGCG 211
>gi|392591810|gb|EIW81137.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 437
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 103/242 (42%), Gaps = 21/242 (8%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKN---------SVPKPHLRLTFFRTINL 63
P A+ + L ++VA+D S I Q A+++ HL F+RTI +
Sbjct: 47 PAAQEHDIKTLFGRKVAIDASMSIYQFLIAVRQKDGEMLTNDAGETTSHLMGFFYRTIRI 106
Query: 64 FAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--- 120
G P +V DG P LKS RF + A+E E F +
Sbjct: 107 VEN-GIKPAYVFDGKPPDLKSGVLSKRFEKREEAKEEGEEAKETGTAEDVDRFSRRTVRV 165
Query: 121 -----QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK- 174
+EC LL L G+PV+ A EAEA CA+L G V A + D D F A +++
Sbjct: 166 TKEHNEECRRLLRLMGIPVIVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFHAPVLLRH 225
Query: 175 -CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K P + GL + I + +L+G D+ L ++G+G +AL+ ++
Sbjct: 226 LTFSEAKKAPISEIHLERALQGLEMDMSQFIDLCILLGCDY-LEPIKGVGPKSALKLIRE 284
Query: 234 FS 235
+
Sbjct: 285 YG 286
>gi|307102466|gb|EFN50740.1| hypothetical protein CHLNCDRAFT_37697 [Chlorella variabilis]
Length = 389
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL+ FFRT+ + + G PVFV +G LK + R R + L A+E E
Sbjct: 64 HLQGMFFRTVRML-EAGMKPVFVFEGKAPELKREELAKRSNRREDANTELEAAKEAGNAE 122
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ + K +EC LL L G+PVL+A EAEA CAQL +G V T D D
Sbjct: 123 DVEKYSKRTVRVTREHNEECKRLLRLMGVPVLEAPSEAEAQCAQLCKDGLVYGISTEDMD 182
Query: 164 AFLFGA-KCVVKCIRPNTKEPFECYCISD-IEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
+ FG K + + P++++P + + L L I + +L G D+ + G
Sbjct: 183 SLTFGTPKLIRHLMAPSSQKPLAMEFDHELVLKELELTEDQFIDLCILCGCDYTAK-ISG 241
Query: 222 IGLDTALQFVQN 233
IG AL ++
Sbjct: 242 IGAVRALSLIKK 253
>gi|448499403|ref|ZP_21611330.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
gi|445697358|gb|ELZ49423.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
Length = 325
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 20/221 (9%)
Query: 28 VAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL---------FAKFGAFPVFVVDGT 78
VAVD W+ ++ T K + + + NL F + PV V DG
Sbjct: 25 VAVDAHNWLYRYLTTTVKWTSEEKYTTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGA 84
Query: 79 PSPLKS-QARLARFYRSTIDASTLPVAEEGILVE------RNQTFLKCVQECV-ELLELF 130
+ LK+ + R R + E G VE R Q +QE ELLEL
Sbjct: 85 VTDLKADEVAERREKREAAEERKAAAEERGDAVEAARLEARTQRLTDTIQETTRELLELL 144
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
+PV++A E EA CAQ+ + G VD + D D LFGA ++ + +K E ++
Sbjct: 145 DVPVVEAPAEGEAQCAQMAAAGTVDHAGSEDYDTLLFGAPTTLRQL--TSKGDPELMDLA 202
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
+ LGL R+ L+ +++L G D + GV+G+G TA++ V
Sbjct: 203 ATLSDLGLDRQGLVDVAMLCGTDFN-EGVRGVGPKTAVKAV 242
>gi|409042314|gb|EKM51798.1| hypothetical protein PHACADRAFT_102664 [Phanerochaete carnosa
HHB-10118-sp]
Length = 384
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 37/261 (14%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKKN---------SVPKPHLRLTFFRTINLFAKFGAFPVF 73
L ++VA+D S I Q A+++ HL F+RTI + G P++
Sbjct: 26 LFGRKVAIDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGFFYRTIRMVDN-GIKPLY 84
Query: 74 VVDGTPSPLKSQARLARFYR---------------STIDASTLPVAEEGILVERNQTFLK 118
V DG P LKS RF R +T D + + E+N+
Sbjct: 85 VFDGKPPELKSGVLSKRFERREEAKEDEEEAKETGTTEDVDRFSRRQVKVTREQNE---- 140
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CI 176
EC LL L G+P + A EAEA CA+L G V A + D D F + +++
Sbjct: 141 ---ECRRLLTLMGVPWVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNSAILLRHLTF 197
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS- 235
K P + + GL + I + +L+G D+ L ++G+G +AL+ ++ +
Sbjct: 198 SEARKAPISEINLEKVLEGLEMSMSQFIDLCILLGCDY-LEPIKGVGPKSALKLIREYGG 256
Query: 236 -EDEILNILHKIGNGDIPQYW 255
+ + ++ K G +P W
Sbjct: 257 LAEVVEHLREKCGGISVPDEW 277
>gi|403341860|gb|EJY70247.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 404
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 110/250 (44%), Gaps = 29/250 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIKK-------------NSVPKPHLRLTFFRTINLFAK 66
LD L K VA D S I Q A + HL F RTI F +
Sbjct: 23 LDLLTGKTVACDASMAIYQFLIATQSMKQGMGISEMRDSEGNLTGHLVGLFHRTIQ-FME 81
Query: 67 FGAFPVFVVDGTPSPLKS---------QARLARFYRSTIDASTLPVAEEGILVERN-QTF 116
G P++V DG P LKS + + ++ IDA L A+ + R+ +
Sbjct: 82 NGVKPIWVFDGKPPELKSYVLDQRKENKEKAEETKQTMIDAGDLEGAKR--MAGRSIRVT 139
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+ +++ +LL L G PV++A GEAEA CA + G A + D D+ FG +++
Sbjct: 140 PEMMEDAKKLLRLMGTPVVEAPGEAEAQCAVIVKHGLAYATASEDMDSLTFGTNVLLRGF 199
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE 236
+ KEP ++ + G L + I + +L G D+ N + G+G A +F+
Sbjct: 200 N-SKKEPIIQIDLAQVLEGFNLNHEQFIDLCILCGCDYTTN-IPGVGPVKAFKFISE-EG 256
Query: 237 DEILNILHKI 246
I N++ +I
Sbjct: 257 GTIENVISRI 266
>gi|324715041|ref|NP_001191354.1| BIVM-ERCC5 protein [Homo sapiens]
Length = 1640
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 1164 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMF 1223
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V +
Sbjct: 1224 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF 1279
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1280 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 1335
>gi|358367996|dbj|GAA84614.1| Rad2-like endonuclease [Aspergillus kawachii IFO 4308]
Length = 875
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+AVD+S W+ Q + + P LR F+R + + A P+FV DG P
Sbjct: 31 RPIRIAVDISIWLFQVQAGRGGRN---PELRTLFYRLLKILA-LPIHPLFVYDGKNKP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
P + R+ ++ L++LF P +A GEAEA
Sbjct: 85 ------------------PFKRGKAVSSRSYGSAPIIRLSKILVDLFKFPRHEAPGEAEA 126
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAG---- 195
CA+L G VDA +T D DA +FG+ V K +T C AG
Sbjct: 127 ECARLQRAGVVDAVMTNDVDALMFGSTFTVMGFSKESGSSTGAATHVTCYRMNTAGDPSS 186
Query: 196 LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ L R +I ++L G D+ +GV G A + + ++L IL G
Sbjct: 187 VKLDRAGMILFAMLSGGDYLPSGVPKCGSKLAGEIAKAGFGADLLEILESDG 238
>gi|1389577|dbj|BAA03813.1| ERCC5 [Mus musculus]
Length = 1170
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 766 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVY 821
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 822 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 879
Query: 234 F 234
F
Sbjct: 880 F 880
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|74141263|dbj|BAE35937.1| unnamed protein product [Mus musculus]
Length = 898
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 663 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVY 718
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 719 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 776
Query: 234 F 234
F
Sbjct: 777 F 777
>gi|115456427|ref|NP_001051814.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|62510683|sp|Q75LI2.1|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B; AltName:
Full=OsFEN-1b
gi|317374867|sp|B8AMS4.1|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica
Group]
gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group]
gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
Length = 412
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 29/255 (11%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFV 74
R + VA+D S I Q + + HL+ RT+ + + G PVFV
Sbjct: 27 RGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRIL-EAGIKPVFV 85
Query: 75 VDGTPSPLKSQARLARFYRSTIDAST------LPVAEEGILVERNQTFLKCV----QECV 124
DG P +K + R + D S+ + V +E ++ + ++ +K ++C
Sbjct: 86 FDGEPPDMKKKELAKRSLKR--DGSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCK 143
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KE 182
LL L G+PV++A GEAEA CA L V A + D D+ FGA+ ++ + + +
Sbjct: 144 RLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRS 203
Query: 183 PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ--NFSEDEIL 240
P + +S + LGL I + +L G D+ N ++GIG AL+ ++ + E+ +
Sbjct: 204 PVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCEN-IRGIGGQRALKLIRQHGYIEEVVQ 262
Query: 241 NILHKIGNGDIPQYW 255
N+ +P+ W
Sbjct: 263 NLSQT--RYSVPEDW 275
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 115/260 (44%), Gaps = 32/260 (12%)
Query: 1 MGVGGKFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIK------KNSVPK 50
MG+ G LL YA + + L +++A+D S I Q +A++ +N +
Sbjct: 1 MGIKG-LTKLLGDYAPSCVQQQELKNYFGRKIAIDASMNIYQFLSAVRAGADNLRNEAGE 59
Query: 51 --PHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF-YRSTIDASTLPVAEEG 107
HL F+RT L + G P +V DG P LKS R R +AS EEG
Sbjct: 60 VTSHLSGLFYRTTRLM-ELGIMPCYVFDGKPPELKSGELSKRIEARRQAEASAALAKEEG 118
Query: 108 ILVERNQTFLK--------CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
VE + F + +++ LL L G+P+L+A EAEA CA L E V A +
Sbjct: 119 D-VEAYEKFNRRVNKVSPEVIEQSKRLLRLMGIPILEAPEEAEAQCASLCKENLVYATAS 177
Query: 160 ADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAG-------LGLKRKHLIAMSLLIGN 212
D D+ FG+ V++ + E I +E L + I + +L G
Sbjct: 178 EDMDSLTFGSSKVIRQLWVGATSTAEKKGIHPLEFSLEKALLELNFSYEQFIDLCILCGC 237
Query: 213 DHDLNGVQGIGLDTALQFVQ 232
D+ L+ ++GIG A ++
Sbjct: 238 DY-LDSIRGIGPYKAFNLIR 256
>gi|134056976|emb|CAK44323.1| unnamed protein product [Aspergillus niger]
Length = 872
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+AVD+S W+ Q + + P LR F+R + + A P+FV DG P
Sbjct: 31 RPIRIAVDISIWLFQVQAGRGGRN---PELRTLFYRLLKILA-LPIHPLFVYDGKNKP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
P + R+ ++ L++LF P +A GEAEA
Sbjct: 85 ------------------PFKRGKAVSSRSYGNAPIIRLSKILVDLFKFPRHEAPGEAEA 126
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAG---- 195
CA+L G VDA +T D DA +FG+ V K +T C AG
Sbjct: 127 ECARLQRAGVVDAVMTNDVDALMFGSTFTVMGFSKESGSSTGAATHVTCYRMNTAGDPSS 186
Query: 196 LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ L R +I ++L G D+ +GV G A + + ++L IL G
Sbjct: 187 VKLNRAGMILFAMLSGGDYLPSGVPKCGSKLAGEIAKAGFGADLLEILESDG 238
>gi|29467052|dbj|BAC66965.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|37496995|dbj|BAC98428.1| flap endonuclease-1b [Oryza sativa Japonica Group]
Length = 412
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 29/255 (11%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFV 74
R + VA+D S I Q + + HL+ RT+ + + G PVFV
Sbjct: 27 RGRVVAIDASLSIYQFLIVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRIL-EAGIKPVFV 85
Query: 75 VDGTPSPLKSQARLARFYRSTIDAST------LPVAEEGILVERNQTFLKCV----QECV 124
DG P +K + R + D S+ + V +E ++ + ++ +K ++C
Sbjct: 86 FDGEPPDMKKKELAKRSLKR--DGSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCK 143
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KE 182
LL L G+PV++A GEAEA CA L V A + D D+ FGA+ ++ + + +
Sbjct: 144 RLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRS 203
Query: 183 PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ--NFSEDEIL 240
P + +S + LGL I + +L G D+ N ++GIG AL+ ++ + E+ +
Sbjct: 204 PVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCEN-IRGIGGQRALKLIRQHGYIEEVVQ 262
Query: 241 NILHKIGNGDIPQYW 255
N+ +P+ W
Sbjct: 263 NLSQT--RYSVPEDW 275
>gi|392594781|gb|EIW84105.1| PIN domain-like protein, partial [Coniophora puteana RWD-64-598
SS2]
Length = 242
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 95 TIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYV 154
D + P + G VERN C L++ FG L A GEAEA A +N V
Sbjct: 38 VFDGADRPKVKRGKTVERNVPHYLTNGFC-SLIKAFGFTYLWAPGEAEAELAAMNKYTVV 96
Query: 155 DACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDH 214
DA +T DSDAF+FG + +V+ + + Y + I+ GL L+ ++L+ G D+
Sbjct: 97 DAVMTNDSDAFVFGTRRLVRQL-------VKVYTVGRIQEKTGLSNDALLLIALVRGGDY 149
Query: 215 DLNGVQGIGLDTALQFVQNFSEDEILNIL 243
D G++G G++ A + + S E L +
Sbjct: 150 DTVGLKGAGIELAYEIASHTSLAEKLGAM 178
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 21/226 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKN---------SVPKPHLRLTFFRTINLFAKFGAFPVFVVD 76
++VAVD S I Q A+++ HL F+RTI + G P +V D
Sbjct: 29 RKVAVDASMSIYQFLIAVRQKDGELLTNDAGETTSHLMGFFYRTIRMVEN-GIKPAYVFD 87
Query: 77 GTPSPLKSQARLARF-YRSTIDASTLPVAEEGILVERNQTFLKCV-------QECVELLE 128
G P LKS RF R E G + ++ + V +EC LL
Sbjct: 88 GKPPELKSGVLSKRFEKREEAKEDNEEAKETGTAEDMDRFSRRTVKVTREHNEECRRLLG 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+P + A EAEA CA+L G V A + D D FGA + + K P
Sbjct: 148 LMGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTLTFGAPILYRHLTFSEARKTPISE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ GL + + +L+G D+ L ++G+G +AL+ ++
Sbjct: 208 INLQKALEGLEMNMSQFTELCILLGCDY-LEPIKGVGPKSALKLIR 252
>gi|1209080|gb|AAA91039.1| XPG [Mus musculus]
gi|1209097|gb|AAB17885.1| XPG [Mus musculus]
Length = 1170
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 766 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVY 821
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 822 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 879
Query: 234 F 234
F
Sbjct: 880 F 880
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|407462243|ref|YP_006773560.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
gi|407045865|gb|AFS80618.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
Length = 340
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 101/226 (44%), Gaps = 41/226 (18%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL +R +N F G PV+V DG P LK+ A + R + +DA+ + E + +
Sbjct: 57 HLSGLLYRNVN-FLSLGIKPVYVFDGKPPSLKT-AEIERRKQIKMDAT---IKYEKAIAD 111
Query: 112 RNQ----------TFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159
N T +K V+E LL FG+P ++A E EA A L + G A +
Sbjct: 112 GNMEDARKYAQQTTSMKDGMVKESKHLLACFGIPYIEAPSEGEATAAHLTNTGQAYASAS 171
Query: 160 ADSDAFLFGAKCVVKCIR-------PNTKEPFECYCISDIEA-----GLGLKRKHLIAMS 207
D D+ L GAK +V+ PN K + IE L L R+ LI +
Sbjct: 172 QDFDSILCGAKRLVRNFTNSGRRKIPN-KNTYIDIVPEIIETQKTLDSLELTREELIDVG 230
Query: 208 LLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
+LIG D + NG + IG TAL+ ++ S E DIPQ
Sbjct: 231 ILIGTDFNPNGFERIGPKTALKMIKQHSRLE-----------DIPQ 265
>gi|453086627|gb|EMF14669.1| hypothetical protein SEPMUDRAFT_63272 [Mycosphaerella populorum
SO2202]
Length = 788
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 99/234 (42%), Gaps = 34/234 (14%)
Query: 1 MGVGGKFWDLLK----PYARFEGLDFL---RDKRVAVDLSYWIVQHETAIKKNSVPKPHL 53
MGV G F +L A+ F R R+A+D+S W+ Q + P L
Sbjct: 1 MGVSGLFKELGPGQRISVAKLSATHFTTHGRPLRLAIDVSIWLFQ---ILASKGGSNPAL 57
Query: 54 RLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN 113
R TF+ + P+FV DG P F R+ V G+ V
Sbjct: 58 R-TFYYRLLRLLSLNIHPLFVFDGPNKPT--------FKRNKR------VGGPGVRVASV 102
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
FL ELL FG P A GEAEA CA L EG VDA ++ D D +FG+ +
Sbjct: 103 PEFL-----AKELLRKFGFPWHVAPGEAEAECALLQREGVVDAVLSEDVDTLMFGSGVLW 157
Query: 174 K--CIRPNTKEPFEC--YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIG 223
+ K P C Y ++ GL ++ ++ ++L+ G D+ + G+ G G
Sbjct: 158 RNWTAEGKGKVPTHCSVYNAKAVKEKSGLDKEGMVLVALMSGGDYIVEGIPGCG 211
>gi|255711770|ref|XP_002552168.1| KLTH0B08756p [Lachancea thermotolerans]
gi|238933546|emb|CAR21730.1| KLTH0B08756p [Lachancea thermotolerans CBS 6340]
Length = 1023
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 119 CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP 178
V E +LL FG+P + A EAEA CA+L G VD IT DSD FLFG V K +
Sbjct: 760 MVAEVQDLLTRFGIPFMTAPMEAEAQCAELLMLGLVDGIITDDSDIFLFGGDKVYKNMF- 818
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
K E Y ++ LGL R+ I ++ L+G+D+ GV+ +G +A++ + F
Sbjct: 819 QEKNYVEYYYSDLMKKELGLDREKFIELAQLLGSDY-TTGVKSVGPVSAMEILAEF 873
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV WD++ P A+ L+ L +KR+AVD S WI Q A++ N++ H+ + F
Sbjct: 1 MGVHA-LWDIVGPTAKPVRLESLSNKRLAVDASIWIYQFLKAVRDKEGNAMRYSHV-VGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR 93
FR I FG PVFV DG LK + R R
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGAPALKRRTIQQRKER 94
>gi|397524400|ref|XP_003832181.1| PREDICTED: DNA repair protein complementing XP-G cells [Pan paniscus]
Length = 1754
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 1278 VDGEPQEAEEDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMF 1337
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V +
Sbjct: 1338 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF 1393
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 1394 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 1449
>gi|332242072|ref|XP_003270208.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Nomascus leucogenys]
Length = 1189
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 710 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERTAATVTGQMF 769
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V K
Sbjct: 770 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNF 825
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 826 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 881
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +A+D+S W+ Q ++ + + PHL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAIDISIWLNQALKGVRDRHGDPIENPHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R R +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|317027813|ref|XP_001400048.2| rad2-like endonuclease [Aspergillus niger CBS 513.88]
Length = 875
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+AVD+S W+ Q + + P LR F+R + + A P+FV DG P
Sbjct: 31 RPIRIAVDISIWLFQVQAGRGGRN---PELRTLFYRLLKILA-LPIHPLFVYDGKNKP-- 84
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
P + R+ ++ L++LF P +A GEAEA
Sbjct: 85 ------------------PFKRGKAVSSRSYGNAPIIRLSKILVDLFKFPRHEAPGEAEA 126
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAG---- 195
CA+L G VDA +T D DA +FG+ V K +T C AG
Sbjct: 127 ECARLQRAGVVDAVMTNDVDALMFGSTFTVMGFSKESGSSTGAATHVTCYRMNTAGDPSS 186
Query: 196 LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ L R +I ++L G D+ +GV G A + + ++L IL G
Sbjct: 187 VKLNRAGMILFAMLSGGDYLPSGVPKCGSKLAGEIAKAGFGADLLEILESDG 238
>gi|148664472|gb|EDK96888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1171
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 766 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVY 821
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 822 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 879
Query: 234 F 234
F
Sbjct: 880 F 880
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|407414008|gb|EKF35678.1| hypothetical protein MOQ_002324 [Trypanosoma cruzi marinkellei]
Length = 393
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 34/255 (13%)
Query: 26 KRVAVDLSYWIVQHETAIK------------KNSVPKPHLRLTFFRTINLFAKFGAFPVF 73
+R+A+D S I Q A+K + HL F RT+ + + G P++
Sbjct: 29 RRIAIDASMTIYQFIIAMKGFQDGQGMELTNEAGEVTSHLNGLFARTLRMVDE-GLRPIY 87
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG------------ILVERNQTFLKCV 120
V DG P LK+ R R+ A EEG + V R Q +
Sbjct: 88 VFDGKPPTLKASELQERRQRAEEAQQLFDTAKEEGNDELMEKMSKRTVRVSREQ-----L 142
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RP 178
+E +LL+L G+PV++A EAEA CA+L + A T D DA FGA +++ +
Sbjct: 143 EEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAWAVATEDMDALTFGAPVMLRHLTYSE 202
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
K P + + +I GL I + +L+G D+ + + GIG A + ++ + E
Sbjct: 203 AKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDY-VPKIPGIGPQKAWEGIKKHGDIE 261
Query: 239 ILNILHKIGNGDIPQ 253
L G +P+
Sbjct: 262 TLLQSLDAGRHSVPE 276
>gi|187954383|gb|AAI41071.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1170
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 766 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVY 821
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 822 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 879
Query: 234 F 234
F
Sbjct: 880 F 880
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|317374937|sp|C5WU23.2|FEN12_SORBI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
Length = 428
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 16/216 (7%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS-----TLPVAEE 106
HL+ RT+ + + G PVFV DG P +K + LA+ DA+ + + +E
Sbjct: 91 HLQGMLNRTVRML-EAGIKPVFVFDGEPPEMKKK-ELAKRSLKRDDATKDLNRAIEIGDE 148
Query: 107 GILVERNQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
+ + ++ +K + +C LL L G+PV++A GEAEA CA L V A + D
Sbjct: 149 DAVEKFSKRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDM 208
Query: 163 DAFLFGAKCVVKCIRP--NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
D+ FGA+ ++ + K P + +S + LGL I + +L G D+ N ++
Sbjct: 209 DSLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCEN-IK 267
Query: 221 GIGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYW 255
GIG AL+ + Q+ +E+L L++ +P+ W
Sbjct: 268 GIGGQRALKLIRQHGCIEEVLQNLNQT-RFSVPEDW 302
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
++L+LFG+P + A EAE+ CA LN G A IT DSDA +FGA V+K F
Sbjct: 536 KMLKLFGIPYIVAPSEAESQCAHLNESGACYAVITDDSDALVFGANRVLKNFY--NSNIF 593
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
E Y + + LG+ R+ L ++++ G D+ G++G+G+ AL+ ++ +
Sbjct: 594 EVYTSERLFSQLGIGRQELALIAIICGCDY-TTGIKGVGIINALEIIKAY 642
>gi|417406083|gb|JAA49718.1| Putative 5'-3' exonuclease [Desmodus rotundus]
Length = 1189
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 96 IDASTLPVAEEGILVERNQTFLKCVQ--------------ECVELLELFGMPVLKAKGEA 141
I+ + L E +L E+N K Q E ELL LFG+P ++A EA
Sbjct: 738 INLAELETLESNLLTEQNSLKAKKQQQERIAATVTGQMFLESQELLRLFGIPYIEAPMEA 797
Query: 142 EALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRK 201
EA CA L+ IT DSD +LFGA+ V K N + E Y D LGL R
Sbjct: 798 EAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF-NKNKFVEYYQYVDFHNQLGLDRN 856
Query: 202 HLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
LI ++ L+G+D+ GV +G TA++ + F
Sbjct: 857 KLIILAYLLGSDY-TEGVPTVGCVTAMEILNEF 888
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ HL LT
Sbjct: 1 MGVQG-LWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q R ++ + + E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDTPLLKKQTLAKRRHKKDLATNDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|448365125|ref|ZP_21553668.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
gi|445656129|gb|ELZ08969.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
Length = 325
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 50/289 (17%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINL--------- 63
P+A EG+ VAVD W+ ++ T K + + NL
Sbjct: 16 PFADIEGV-------VAVDAHNWLYRYLTTTVKWTNSAKYTTGDGTEVANLVGIVQGLPK 68
Query: 64 FAKFGAFPVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEG------ILVERNQTF 116
F + PV V DG PS LK + R R T + EEG L R Q
Sbjct: 69 FFENDVTPVMVFDGGPSELKEDEIESRRDQRRTYEEQLETAREEGDEVAIAQLESRTQRL 128
Query: 117 LKCVQECV-ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+QE ELLEL +P+++A E EA A + G D + D DA LFGA ++
Sbjct: 129 TPTIQETSRELLELLDVPIVEAPAEGEAQAAHMARRGDADYVGSEDYDALLFGAPLTLRQ 188
Query: 176 IRPNTKEPFECYCISDIEAGL---GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + +P D++A L GL + LI ++LIG D + GV GIG TA+ +
Sbjct: 189 L-TSKGDPERM----DLQATLDHHGLTLEQLIDAAILIGTDFN-EGVSGIGPKTAIAEIT 242
Query: 233 NFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCS 281
+GD+ WG +++ +++ + D + + + +
Sbjct: 243 E--------------HGDL---WGVLEARGDSIRYGDRVRELFREPNVT 274
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 24/246 (9%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVP---------KPHLRLTFFRTINLFAKFGAFPVFV 74
R + +AVD S I Q + + HL+ RTI + + G PVFV
Sbjct: 27 RGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGEITSHLQGMLNRTIRML-EAGIKPVFV 85
Query: 75 VDGTPSPLKSQARLARFYRSTIDA-----STLPVAEEGILVERNQTFLKCV----QECVE 125
DG P +K + LA+ DA + + +E + + ++ +K +C
Sbjct: 86 FDGEPPEMKKK-ELAKRSLKRDDAIKDLNRAMEIGDENAIEKFSKRTVKVTGRHNDDCKR 144
Query: 126 LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRP--NTKEP 183
LL L G+PV++A GEAEA CA L V A + D D FGA+ ++ + K P
Sbjct: 145 LLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDTLTFGARRFLRHLTDLGYKKSP 204
Query: 184 FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNI 242
+ +S + LGL I + +L G D+ N ++GIG AL+ + Q+ +E+L
Sbjct: 205 VTEFDVSKVLEELGLTMDQFIDLCILSGCDYCEN-IRGIGGQRALKLIRQHGCIEEVLQN 263
Query: 243 LHKIGN 248
L++ N
Sbjct: 264 LNQTRN 269
>gi|407464594|ref|YP_006775476.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047782|gb|AFS82534.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
Length = 340
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTL---PVA---- 104
HL +R +N F G PV+V DG P LK+ A + R + DA+ VA
Sbjct: 57 HLSGLLYRNVN-FLSLGIKPVYVFDGRPPSLKT-AEIERRKQIKKDATVKYEKAVAAGNM 114
Query: 105 EEGILVERNQTFLK--CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
E+ + T +K V+E + L G+P ++A E EA A L + G A + D
Sbjct: 115 EDARKFAQQTTSMKDGMVKESKQFLTYLGIPYIEAPSEGEATAAHLTNTGQAYASASQDY 174
Query: 163 DAFLFGAKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIG 211
D+ L GAK +V+ + + E +GL R+ LI + +LIG
Sbjct: 175 DSILCGAKRLVRNFTTSGRRKIPNRNTYIDILPEIIETQKTLDEIGLTREELIDVGILIG 234
Query: 212 NDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ 253
D + NG + IG TA++ ++ +S E DIPQ
Sbjct: 235 TDFNPNGFERIGPKTAMKLIKQYSRLE-----------DIPQ 265
>gi|336477791|ref|YP_004616932.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
gi|335931172|gb|AEH61713.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
Length = 337
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 116/256 (45%), Gaps = 32/256 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L L + VAVD + Q + I+ ++ P HL +R NL + G
Sbjct: 16 LSSLSSRVVAVDAHNTLYQFLSIIRQRDGTPLMDSGGMVTSHLSGILYRFTNLIEE-GIR 74
Query: 71 PVFVVDGTPSPLKSQA-RLARFYRSTIDASTLPVAEEGILVER---NQTFLKCVQECVE- 125
PVFV DGTP KS+ R R T + E+G+ E Q +K +E
Sbjct: 75 PVFVFDGTPPDFKSKTLDKRRKVRETAHSRWDEAREKGLEKEAYKYAQASVKLDSYVIES 134
Query: 126 ---LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
LL + G+PV++A E EA A + G + + D D+ LFGA V++ I K
Sbjct: 135 SKTLLSIMGIPVVQAPCEGEAQAAHMVKSGDANYVASQDYDSLLFGAPFVIRNIAITGKR 194
Query: 183 PF---ECYC-----ISDIEAGL---GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
+ Y + D+E L G+ L+ ++L +G D++ NG++ IG AL+ V
Sbjct: 195 KLPGKDAYVDVKPEVIDLEHSLGQMGITHPQLVDIALCVGTDYN-NGLENIGQKRALELV 253
Query: 232 QNFSEDEILNILHKIG 247
+ +I ++L K+G
Sbjct: 254 KKHG--DIESVLRKLG 267
>gi|170172544|ref|NP_035859.2| DNA repair protein complementing XP-G cells homolog [Mus musculus]
Length = 1170
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 766 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVY 821
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 822 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 879
Query: 234 F 234
F
Sbjct: 880 F 880
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|358058270|dbj|GAA95947.1| hypothetical protein E5Q_02605 [Mixia osmundae IAM 14324]
Length = 730
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 119/317 (37%), Gaps = 74/317 (23%)
Query: 1 MGVGGKFWDLLKP-----------YARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVP 49
MGV G WDL++P + FE D LR + +D S W + +
Sbjct: 1 MGVAG-LWDLIRPAGQVKAWSAMTFEAFESTD-LRALTLGIDASIWAFHANFSQGRT--- 55
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
P LR+ FFR L + GA +FV DG P K P + G
Sbjct: 56 HPELRMHFFRLARLL-RSGAKCLFVFDG---PHK------------------PTWKRGQR 93
Query: 110 VERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGA 169
V T + ++ FG + A GEAEA A LNS G +DA +T D DAF+FGA
Sbjct: 94 VGTQSTNTLVARALQAMIVAFGFEWIVAPGEAEAELAYLNSSGTIDAIMTDDVDAFVFGA 153
Query: 170 KCV--------------VKCIRPN---------TKEP----------FECYCISDIEAGL 196
+ K IR N EP Y +
Sbjct: 154 HLIWRNWGTNLSGKDAKGKQIRTNHSSVTPDAEDDEPTKVTRNDDHHVTVYSAERVLLKA 213
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDIPQ--- 253
GL R +I ++LL G D+D G+ G A + E++ I+ ++ +
Sbjct: 214 GLDRDDMILIALLCGGDYDTAGLLKCGPTVAAGLTRCGYGKELMCIIKDSKTAELSEGMK 273
Query: 254 YWGDIKSTEEAVSHSDE 270
+W + TE + S E
Sbjct: 274 HWRERLQTELRTNASGE 290
>gi|408360334|sp|P35689.4|ERCC5_MOUSE RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=DNA excision repair protein ERCC-5;
AltName: Full=Xeroderma pigmentosum group
G-complementing protein homolog
Length = 1170
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 766 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVY 821
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 822 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 879
Query: 234 F 234
F
Sbjct: 880 F 880
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|260825215|ref|XP_002607562.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
gi|229292910|gb|EEN63572.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
Length = 162
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
E ELL LFG+P +++ EAEA CA L+ + IT DSD +LFG + V K +
Sbjct: 40 ESQELLRLFGIPYVQSPTEAEAQCAFLDQSKQTEGTITDDSDVWLFGGRQVYKNFFSQQR 99
Query: 182 EPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
+ E + D+ + L + R LI +LL G+D+ G+QG+G A++ +Q F + I
Sbjct: 100 D-MEVFKYKDVVSQLAMDRSRLINFALLTGSDYT-EGIQGVGKVLAMEVLQEFPGEGI 155
>gi|393225781|gb|EJD33677.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 106/262 (40%), Gaps = 65/262 (24%)
Query: 1 MGVGGKFWDLLKPYAR-----------FEGLDF-LRDKRVAVDLSYWI----VQHETAIK 44
MGV G W +L+P A FE + R RV +D+S W+ V T ++
Sbjct: 1 MGVKG-LWSVLQPAAESKSVAQLAMHAFEANTYGYRGYRVGIDVSVWLGHMKVFDGTPLR 59
Query: 45 KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA 104
V + L++ FFR L A P+FV DG P + + + I+
Sbjct: 60 ---VEQLGLQMLFFRCARLLA-MPILPLFVFDGLKRPAHKRGKTTHYTTPRIEG------ 109
Query: 105 EEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
++ FG KA GEAEA A LNS G +DA T D DA
Sbjct: 110 -----------------HAQNIISSFGFEWRKAPGEAEADLAWLNSMGLIDAVWTDDGDA 152
Query: 165 FLFGAKCVV----KCIRPNTKEP---------------FECYCISDIEAGLGLKRKHLIA 205
FLFGA V+ + + N + P F + D E + L R LI
Sbjct: 153 FLFGATTVMRNPGRNLSSNIRSPALTMEGKQNENQVHVFHAEDLIDNE-NIRLDRNGLIL 211
Query: 206 MSLLIGNDHDLNGVQGIGLDTA 227
++LL G D+ G+ G+G+ A
Sbjct: 212 VALLRGGDYH-EGIDGVGMTIA 232
>gi|334346854|ref|XP_001376389.2| PREDICTED: hypothetical protein LOC100025456 [Monodelphis domestica]
Length = 1410
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 26/158 (16%)
Query: 96 IDASTLPVAEEGILVERN------------------QTFLKCVQECVELLELFGMPVLKA 137
I+ L E +LVE+N Q FL E ELL LFG+P ++A
Sbjct: 885 INLEELEALENNLLVEQNSLKAQKQQQERIAATVTGQMFL----ESQELLRLFGIPYIEA 940
Query: 138 KGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF-ECYCISDIEAGL 196
EAEA CA L+ IT DSD +LFGA+ V K +K+ F E Y D L
Sbjct: 941 PMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFF--SKDKFVEYYQYVDFHNQL 998
Query: 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
GL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 999 GLDRSKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 1035
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL F+RT+ + G P++V DG P LKS R R A+E E
Sbjct: 62 HLMGMFYRTLRMVDN-GIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGTAE 120
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
+ F + EC LL+L G+P + A EAEA CA L EG V + D D
Sbjct: 121 DVEKFSRRTVRVTREHNAECKRLLKLMGIPYIDAPTEAEAQCAVLAKEGKVFGAASEDMD 180
Query: 164 AFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
F A +++ KEP + + GLG++ + + +L+G D+ L+ +
Sbjct: 181 TLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMEMTQFVDLCILLGCDY-LDPIPK 239
Query: 222 IGLDTALQFVQN 233
+G +TAL+ +++
Sbjct: 240 VGPNTALKMIRD 251
>gi|303317440|ref|XP_003068722.1| XPG family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240108403|gb|EER26577.1| XPG family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 789
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+A+D+S W+ Q + A P LR F+R L + P+FV DG
Sbjct: 31 RPLRIAIDVSIWLFQAQAA---QGGLNPELRALFYRLARLIS-LPVHPIFVFDG------ 80
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERN-QTFLKCVQECVELLELFGMPVLKAKGEAE 142
S P + G LV RN ++ ++ L+ELFG A GEAE
Sbjct: 81 ---------------SGRPEYKRGKLVIRNGRSGAWNIRSSKRLIELFGFQHHDAPGEAE 125
Query: 143 ALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS-----DIEAGLG 197
A CA+L + G VDA ++ D D +FG+K +K P +S A +
Sbjct: 126 AECAKLQTMGIVDAAMSNDIDTVMFGSKITFMNFSRASKGPSAATHVSVYRRDGSAANVP 185
Query: 198 LKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNIL 243
+ +LL G D+ GV G A + + ++L+I+
Sbjct: 186 FDAGGMALFALLSGGDYLPAGVPRCGPKLAAEIARAGFGTDLLDII 231
>gi|350634861|gb|EHA23223.1| 5'-3' exonuclease [Aspergillus niger ATCC 1015]
Length = 543
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 24 RDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLK 83
R R+AVD+S W+ Q + + P LR F+R + + A P+FV DG P
Sbjct: 26 RPIRIAVDISIWLFQVQAGRGGRN---PELRTLFYRLLKILA-LPIHPLFVYDGKNKP-- 79
Query: 84 SQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEA 143
P + R+ ++ L++LF P +A GEAEA
Sbjct: 80 ------------------PFKRGKAVSSRSYGNAPIIRLSKILVDLFKFPRHEAPGEAEA 121
Query: 144 LCAQLNSEGYVDACITADSDAFLFGAKCVV----KCIRPNTKEPFECYCISDIEAG---- 195
CA+L G VDA +T D DA +FG+ V K +T C AG
Sbjct: 122 ECARLQRAGVVDAVMTNDVDALMFGSTFTVMGFSKESGSSTGAATHVTCYRMNTAGDPSS 181
Query: 196 LGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ L R +I ++L G D+ +GV G A + + ++L IL G
Sbjct: 182 VKLNRAGMILFAMLSGGDYLPSGVPKCGSKLAGEIAKAGFGADLLEILESDG 233
>gi|74215723|dbj|BAE23409.1| unnamed protein product [Mus musculus]
Length = 1166
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 114 QTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVV 173
Q FL E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V
Sbjct: 766 QMFL----ESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVY 821
Query: 174 KCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
K N + E Y D + LGL R LI ++ L+G+D+ G+ +G TA++ +
Sbjct: 822 KNFF-NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNE 879
Query: 234 F 234
F
Sbjct: 880 F 880
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ + L K +AVD+S W+ Q ++ N + HL LT
Sbjct: 1 MGVQG-LWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR---STIDA 98
F + F P+FV DG LK Q R R ++ID+
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDS 102
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 26/251 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRSDGNVLTNEAGETTSHLMGLFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFY--RSTIDASTLPVAEEGILVERNQTFLKCV-------QECVELLE 128
P LKS LAR R +EG ++ + V +E +LL+
Sbjct: 88 KPPRLKS-GELARRQERREEAQKQASEAEKEGDADNIDKFTRRTVRMTPEHCEEGKKLLK 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+PV++A EAE+ CA L G V A T D DA FG+ +++ K P +
Sbjct: 147 LMGVPVVQAPCEAESQCAALVKAGKVYATGTEDMDALTFGSNVMLRHLTFSEARKMPIQE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS--EDEILNILH 244
+ + + L + I + +L+G D+ + ++G+G A+ ++ + ED + NI
Sbjct: 207 FHLKNALQELNFSMEQFIDLCILLGCDY-CDSIKGVGPKRAVGLIEKYKSIEDIVKNISS 265
Query: 245 KIGNGDIPQYW 255
+ +P+ W
Sbjct: 266 E--KFTVPENW 274
>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
gi|122023721|sp|Q4DKQ5.1|FEN1_TRYCC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
Length = 393
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 34/255 (13%)
Query: 26 KRVAVDLSYWIVQHETAIK------------KNSVPKPHLRLTFFRTINLFAKFGAFPVF 73
+R+A+D S I Q A+K + HL F RT+ + + G P++
Sbjct: 29 RRIAIDASMTIYQFIIAMKGFQDGQGMELTNEAGEVTSHLNGLFARTLRMVDE-GLRPIY 87
Query: 74 VVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG------------ILVERNQTFLKCV 120
V DG P LK+ R R+ A EEG + V R Q +
Sbjct: 88 VFDGKPPTLKASELQERRQRAEEAQQLFDTAKEEGNDELMEKMSKRTVRVSREQ-----L 142
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RP 178
+E +LL+L G+PV++A EAEA CA+L + A T D DA FGA +++ +
Sbjct: 143 EEAKKLLQLMGIPVVQAPSEAEAQCAELVKKKKAWAVATEDMDALTFGAPVMLRHLTYSE 202
Query: 179 NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
K P + + +I GL I + +L+G D+ + + GIG A + ++ + E
Sbjct: 203 AKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCDY-VPKIPGIGPQKAWEGIKKHGDIE 261
Query: 239 ILNILHKIGNGDIPQ 253
L G +P+
Sbjct: 262 TLLQSLDAGRHSVPE 276
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 28/250 (11%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q A+++ + HL F+RT+ + G P +V D
Sbjct: 29 RKVAIDASMSLYQFLIAVRQQDGGQLATDSGETTSHLMGMFYRTLRMIDN-GIKPCYVFD 87
Query: 77 GTPSPLKSQ---ARLARFYRST--IDASTLPVAEEGILVERNQTFLKCVQE----CVELL 127
G P LKS R AR +T +D +T +AE+ ++ + +K +E +LL
Sbjct: 88 GKPPVLKSHELSKRTARREETTKKLDEAT-DIAEK---IKHERRLVKVSKEHNDEAKKLL 143
Query: 128 ELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFE 185
EL G+P + A EAEA CA+L G V A + D D + +V+ KEP +
Sbjct: 144 ELMGIPYVNAPCEAEAQCAELAKVGKVYAAASEDMDTLCYRTPYLVRHLTFSEAKKEPIQ 203
Query: 186 CYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHK 245
+ + L + I + +++G D+ ++G+G TAL+ ++ E I+
Sbjct: 204 EINTEIVLQSMDLTLEQFIDLGIMLGCDY-CESIRGVGPVTALKLIKEHGSLE--KIVEY 260
Query: 246 IGNGDIPQYW 255
I +GD W
Sbjct: 261 IDSGDTKTKW 270
>gi|146090657|ref|XP_001466297.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|398017392|ref|XP_003861883.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
gi|317374906|sp|A4I2L4.1|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|322500111|emb|CBZ35186.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
Length = 395
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Query: 26 KRVAVDLSYWIVQHETAIK-------------KNSVPKPHLRLTFFRTINLFAKFGAFPV 72
+R+A+D S I Q A+K K V HL F RT+ + + G P+
Sbjct: 29 RRIAIDASMSIYQFIIAMKGFQDGQGLELTNEKGDVTS-HLNGLFARTLRMIDE-GIKPI 86
Query: 73 FVVDGTPSPLKSQ---------ARLARFYRSTIDASTLPVAEE----GILVERNQTFLKC 119
+V DG P LK+ A R + DA + E+ + V R+Q
Sbjct: 87 YVFDGKPPKLKADELEMRRQKAAEAEREFEKAKDAGDDEMMEKMSKRTVRVSRDQ----- 141
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIR 177
+ E +LL L G+PV++A EAEA CA+L +G A T D DA FG+ +++ I
Sbjct: 142 IDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAWAVGTEDMDALTFGSTVMLRHLNIS 201
Query: 178 PNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSED 237
K P + ++ GL + + +L+G D+ + V GIG A + +Q +
Sbjct: 202 DAKKRPIAEIHLDEVLQITGLSMGQFVDLCILLGCDY-VPKVPGIGPQKAWEGIQRYGSI 260
Query: 238 E 238
E
Sbjct: 261 E 261
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 30/253 (11%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFRTINLFAKFGAFPVF 73
L ++ VAVD + Q + I++ + P HL +R NL + G PVF
Sbjct: 19 LNNRTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSHLSGIIYRVTNLVEE-GMKPVF 77
Query: 74 VVDGTP-----SPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL--KCVQECVEL 126
V DG P +K++A + R +A+ + E + T + + V + L
Sbjct: 78 VFDGKPPSFKAETIKARAEVREAARQMYEAAKAAGSAEAYKYAQASTSINRQIVDDAKVL 137
Query: 127 LELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF-- 184
L G+P + A E EA A + S G D + D D+ LFGA VV+ I K
Sbjct: 138 LGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLLFGAPRVVRNIAITGKRKVPR 197
Query: 185 ---------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
E + ++ A LGL R+ LI M++L+G D++ G+ +G TAL+ V+
Sbjct: 198 KNIYMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYN-PGIFKVGPKTALKLVKKHG 256
Query: 236 EDEILNILHKIGN 248
D + IL ++G
Sbjct: 257 -DNMPAILDELGQ 268
>gi|332841607|ref|XP_003314253.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Pan troglodytes]
Length = 1186
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 710 VDGEPQEAEEDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMF 769
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V +
Sbjct: 770 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF 825
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 826 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 881
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ PHL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q + R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|448321569|ref|ZP_21511045.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
gi|445603121|gb|ELY57089.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
Length = 325
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 104/236 (44%), Gaps = 33/236 (13%)
Query: 13 PYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLR---------LTFFRTINL 63
P+ EG+ +AVD W+ ++ T K + + + + + I+
Sbjct: 16 PFDEIEGV-------IAVDAHNWLYRYLTTTVKWTSSEKYTTADGTEVANLIGIVQGISR 68
Query: 64 FAKFGAFPVFVVDGTPSPLK-SQARLARFYRSTIDASTLPVAEEGILV------ERNQTF 116
F + PV V DG PS LK + R R T + EEG V R Q
Sbjct: 69 FFEHDVTPVMVFDGGPSQLKEDEIESRREQRRTYEEQLETAREEGDQVAIAQLESRTQRL 128
Query: 117 LKCVQECV-ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
+QE ELLEL +PV++A E EA A + G D + D DA LFGA ++
Sbjct: 129 TPTIQETSRELLELLDVPVVEAPAEGEAQAAHVVKRGDADYVGSEDYDALLFGAPLTLRQ 188
Query: 176 IRPNTKEPFECYCISDIEAGL---GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+ + +P + D+EA L L + LI ++LIG D + GV GIG TA+
Sbjct: 189 L-TSKGDP----ELMDLEATLERHDLTLEQLIDAAILIGTDFN-EGVSGIGPKTAI 238
>gi|393229980|gb|EJD37593.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 106/262 (40%), Gaps = 65/262 (24%)
Query: 1 MGVGGKFWDLLKPYAR-----------FEGLDF-LRDKRVAVDLSYWI----VQHETAIK 44
MGV G W +L+P A FE + R RV +D+S W+ V T ++
Sbjct: 1 MGVKG-LWSVLQPAAESKSVAQLAMHAFEANTYGYRGYRVGIDVSVWLGHMKVFDGTPLR 59
Query: 45 KNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA 104
V + L++ FFR L A P+FV DG P + + + I+
Sbjct: 60 ---VEQLGLQMLFFRCARLLA-MPILPLFVFDGLKRPAYKRGKTTHYTTPRIEGY----- 110
Query: 105 EEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
++ FG KA GEAEA A LNS G +DA T D DA
Sbjct: 111 ------------------AQNIISSFGFEWRKAPGEAEADLAWLNSMGLIDAVWTDDGDA 152
Query: 165 FLFGAKCVV----KCIRPNTKEP---------------FECYCISDIEAGLGLKRKHLIA 205
FLFGA V+ K + N + P F + D E + L R LI
Sbjct: 153 FLFGATTVMRNPGKNLSSNIRSPALTTEGKQNENQVHVFHAEDLIDNE-NIRLDRNGLIL 211
Query: 206 MSLLIGNDHDLNGVQGIGLDTA 227
++LL G D+ G+ G+G+ A
Sbjct: 212 VALLRGGDYH-EGIDGVGMTIA 232
>gi|410215558|gb|JAA04998.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410261564|gb|JAA18748.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410301776|gb|JAA29488.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410335601|gb|JAA36747.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
Length = 1186
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 710 VDGEPQEAEEDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMF 769
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V +
Sbjct: 770 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF 825
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 826 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 881
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ PHL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q + R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
>gi|242032391|ref|XP_002463590.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
gi|241917444|gb|EER90588.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
Length = 477
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 16/216 (7%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS-----TLPVAEE 106
HL+ RT+ + + G PVFV DG P +K + LA+ DA+ + + +E
Sbjct: 140 HLQGMLNRTVRML-EAGIKPVFVFDGEPPEMKKK-ELAKRSLKRDDATKDLNRAIEIGDE 197
Query: 107 GILVERNQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADS 162
+ + ++ +K + +C LL L G+PV++A GEAEA CA L V A + D
Sbjct: 198 DAVEKFSKRTVKVTRKHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDM 257
Query: 163 DAFLFGAKCVVKCIRP--NTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQ 220
D+ FGA+ ++ + K P + +S + LGL I + +L G D+ N ++
Sbjct: 258 DSLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCDYCEN-IK 316
Query: 221 GIGLDTALQFV-QNFSEDEILNILHKIGNGDIPQYW 255
GIG AL+ + Q+ +E+L L++ +P+ W
Sbjct: 317 GIGGQRALKLIRQHGCIEEVLQNLNQT-RFSVPEDW 351
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 21/229 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSVPK---------PHLRLTFFRTINLFAKFGAFPVFVVD 76
++VA+D S + Q ++ + HL F+RT+ + G P FV D
Sbjct: 29 RKVAIDASMSLYQFLIQVRSQDGQQLMNEQGETTSHLMGMFYRTLRIVDN-GIKPCFVFD 87
Query: 77 GTPSPLKS---QARLARFYRSTIDASTLPVAEEGILVER-NQTFLKCVQ----ECVELLE 128
G P LKS R+AR ++ D +V+R + +K + E LLE
Sbjct: 88 GKPPTLKSGELAKRVARHQKAREDQEETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLLE 147
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+P + A EAEA CA L G V A + D D F A +++ KEP
Sbjct: 148 LMGIPFVNAPCEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISE 207
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
Y I GL + + + + +L+G D+ ++G+G A++ ++ +
Sbjct: 208 YNIEKALNGLDMSVEQFVDLCILLGCDY-CEPIRGVGPARAVELIRQYG 255
>gi|60811379|gb|AAX36171.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
Length = 1187
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERN------------------QTF 116
VDG P + A + I+ L E +L ++N Q F
Sbjct: 710 VDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMF 769
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
L E ELL LFG+P ++A EAEA CA L+ IT DSD +LFGA+ V +
Sbjct: 770 L----ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF 825
Query: 177 RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF 234
N + E Y D LGL R LI ++ L+G+D+ G+ +G TA++ + F
Sbjct: 826 F-NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDY-TEGIPTVGCVTAMEILNEF 881
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTF 57
MGV G W LL+ R + L K +AVD+S W+ Q ++ NS+ PHL LT
Sbjct: 1 MGVQG-LWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHL-LTL 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL 117
F + F P+FV DG LK Q + R R + +S E +L +TFL
Sbjct: 59 FHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLL----KTFL 114
Query: 118 K 118
K
Sbjct: 115 K 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,529,247,076
Number of Sequences: 23463169
Number of extensions: 408960435
Number of successful extensions: 971029
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 759
Number of HSP's that attempted gapping in prelim test: 965696
Number of HSP's gapped (non-prelim): 3226
length of query: 602
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 453
effective length of database: 8,863,183,186
effective search space: 4015021983258
effective search space used: 4015021983258
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)