BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044842
(602 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LPD2|GENL1_ARATH Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2
SV=3
Length = 599
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/627 (56%), Positives = 434/627 (69%), Gaps = 53/627 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGVGG FWDLL+PYA+ +G DFLR+KRVAVDLS+WIVQHETA+K V KPHLRLTFFRT
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVK-GFVLKPHLRLTFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQTFLKC 119
INLF+KFGA+PVFVVDGTPSPLKSQAR++RF+RS+ ID LPV ++G+ VERN+ F +
Sbjct: 60 INLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEW 119
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
V+ECVELLEL G+PVLKA GEAEALCAQLNS+G+VDACIT DSDAFLFGA CV+K I+PN
Sbjct: 120 VRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPN 179
Query: 180 TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEI 239
++EPFECY +S IE+GLGLKRKHLIA+SLL+GND+D GV GIG+D AL+ V+ FSED++
Sbjct: 180 SREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQV 239
Query: 240 LNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEY 299
L L IGNG P G IKS ++ E +S HCS CGH G+KR HFK SCE+
Sbjct: 240 LERLQDIGNGLQPAVPGGIKSGDDGEEFRSEMKK--RSPHCSRCGHLGSKRTHFKSSCEH 297
Query: 300 CINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTM 359
C D+ GC+KKP GF+C CS C+K+R +EQKK +WWIKVC KIAL FPN +I+ +
Sbjct: 298 CGCDS--GCIKKPLGFRCECSFCSKDRDLREQKKTNDWWIKVCDKIALAPEFPNRKIIEL 355
Query: 360 YLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMAT 419
YL ++G T DG S+SWG+P T MLVD +V+ W PSY+R+ +LPMLSTIYLRE A
Sbjct: 356 YL--SDGLMTG-DGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLPMLSTIYLREKAR 412
Query: 420 NPVQ-TLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTA------------- 465
N LLC QYEF SI+ +K RYGHQS+V++W+K S SG ++
Sbjct: 413 NNTGYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKST-SGYSHSHSEPEESIVVLEEE 471
Query: 466 -----PVDSDLHLEEFMEYPQIHVD-GDCWFLLTDENMKLVHSAFPKKVDHFLQENERRE 519
P+D + PQ+ D GDC FLLTDE + LV SAFP + +HFL E + RE
Sbjct: 472 EESVDPLDG-------LNEPQVQNDNGDC-FLLTDECIGLVQSAFPDETEHFLHEKKLRE 523
Query: 520 LKRKRTSSLRSEESNGKLESPKSKGVQLSITEFYRSAKV----QSQEKSGADLAKDSNCQ 575
K+K S E + GVQ SIT+FYRSAK QS E G+ A
Sbjct: 524 SKKKNVS-----EEETATPRATTMGVQRSITDFYRSAKKAAAGQSIETGGSSKASAEK-- 576
Query: 576 VDRISKENRRVSSPNLSKSARRRLLFN 602
++ SS NL+KS RRRLLF
Sbjct: 577 ----KRQATSTSSSNLTKSVRRRLLFG 599
>sp|Q64MA3|GENL1_ORYSJ Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica GN=RAD
PE=2 SV=1
Length = 629
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 324/649 (49%), Positives = 425/649 (65%), Gaps = 67/649 (10%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNS--VPKPHLRLTFF 58
MGVGG FWDLLKPYAR EG +LR +RVAVDLS+W+V H AI+ S PHLR FF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 59 RTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYR-STIDASTLPVAE-----EGILVER 112
RT++LF+K GAFPVFVVDG PSPLKSQ R ARF+R S +D + LP E + ++ R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALVQPR 120
Query: 113 NQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCV 172
N F + V++CVELLE GMPVL+AKGE EALCAQLN++G+VDACIT+DSDAFLFGAK V
Sbjct: 121 NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTV 180
Query: 173 VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+K +R N KEPFECY ++DIE+GLGLKRK ++AM+LL+G+DHDL+GV G G +TAL+FVQ
Sbjct: 181 IKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQ 240
Query: 233 NFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAH 292
F ED +L L++IG G P + ++ S S +S+P +S HCS CGHPG K+ H
Sbjct: 241 LFDEDNVLAKLYEIGKGVYPFIGVSAPNIDDLPSPSTKSLPRARSPHCSHCGHPGNKKNH 300
Query: 293 FKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFP 352
K C +C+ D+ E C++KP GF C C C+K R K Q+++ENW IKVC +IA ETNFP
Sbjct: 301 IKDGCNFCLVDSLENCVEKPAGFICECPSCDKARDLKVQRRNENWQIKVCKRIAAETNFP 360
Query: 353 NDEIVTMYLCENNGTFTATDG-PSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLST 411
N+EI+ +YL ++N +G P ++W P E+LVDFL + Q W+P+YIRQ+MLPMLST
Sbjct: 361 NEEIINLYLNDDN--LDNENGVPLLTWNKPDMEILVDFLSFKQNWEPAYIRQRMLPMLST 418
Query: 412 IYLREMATNPVQT-LLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSD 470
IYLREMA++ ++ LL QY+F SI+R+KIRYGH Y+VKWK+ ++ P
Sbjct: 419 IYLREMASSQSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWKRVTRSMIS---NDPPSKQ 475
Query: 471 LHLE------------------------------EFMEYPQI----HVDGDCWFLLTDEN 496
LE E ++ P + D DC FLLTDE+
Sbjct: 476 TELEGKNDKVEVLDGDDEVVDEEEEEPTMISETTELLDEPDVPQVLDDDKDC-FLLTDED 534
Query: 497 MKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESNGKLESPKS---KGVQLSITEFY 553
++LV++AFP + F QE +R LK ++ + +S+ + E+PK GVQLSI EFY
Sbjct: 535 IELVNAAFPDEAQRF-QEEQR--LKEAKSIARKSKLNVAGFETPKGPRPSGVQLSIKEFY 591
Query: 554 RSAKVQSQEKSGADLAKDSNCQVDRISKENRRVSSPNLSKSARRRLLFN 602
RS K S + SG D ++ S+ VD S NL KS RRRLLF+
Sbjct: 592 RSKKGLSGD-SGKDGSRKSS-DVDL---------SKNLPKSVRRRLLFD 629
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 159/545 (29%), Positives = 247/545 (45%), Gaps = 74/545 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K +V KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTVKKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ R P + F
Sbjct: 60 -ISYLTQMNVKLVFVMEGEPPMLKADVISKR-----TQTRYGPSGKSRSQKTGRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+E+LE GMP ++A GEAEA+CA LN+ G+VD C+T D DAFL+GA+ V + N
Sbjct: 114 LRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY IS I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q F
Sbjct: 174 TKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E+ +S P K HCS C HPG+ + H + C
Sbjct: 234 LLQRFNQ---------W-----IEDPCYSVPQSAPK-KVVHCSVCSHPGSPKDHERNGCI 278
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVT 358
C +D + C + C C + + N K CS FP E++
Sbjct: 279 LCKSD--KYCEPHDYDYLCPCEWHQTDHNRHLSEIENNIKKKACSC----EGFPFHEVIQ 332
Query: 359 MYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMA 418
+L N I++ P + F V W Y +K+L +L+
Sbjct: 333 EFLLNKNKMLKP-----ITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLT-------- 379
Query: 419 TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAP-VDSDLH-LEEF 476
+D I R ++G +K ++ + ++ P V + +H LE
Sbjct: 380 ------------RYDMIER---KHG--------RKTSNQLQPIRIVKPRVRNGVHCLEIE 416
Query: 477 MEYPQIHV--DGDC--WFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEE 532
E P+ +V DGD LLT E L +A+P V + + + E K ++ S++++
Sbjct: 417 WEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVY--QKQLSETKGRKQKSMKNKP 474
Query: 533 SNGKL 537
L
Sbjct: 475 KGSHL 479
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 150/539 (27%), Positives = 257/539 (47%), Gaps = 67/539 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVPKPHLRLTFFR 59
MGV W +L+P + L L K +AVDLS W+ + +T K SV KPHLR FFR
Sbjct: 1 MGVND-LWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVMKPHLRNLFFR 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKC 119
I+ + VFV++G P LK+ +++ +S +S +++ F
Sbjct: 60 -ISYLTQMDVKLVFVMEGEPPKLKADV-ISKRNQSRYGSSGKSWSQKT----GRSHFKSV 113
Query: 120 VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN 179
++EC+ +LE G+P ++A GEAEA+CA LN+ G+VD C+T D D FL+GA+ V + N
Sbjct: 114 LRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
Query: 180 TKEP-FECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDE 238
TK+P +CY +S I++ LGL R L+ +++L+G D+ GV G+G + AL+ +Q
Sbjct: 174 TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQS 233
Query: 239 ILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298
+L ++ W E + + S + + K +HCS C HPG+ + H + C
Sbjct: 234 LLQRFNR---------WN-----ETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCR 279
Query: 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHE---NWWIKVCSKIALETNFPNDE 355
C +D + C +P ++ C C +R E +++ E N K C FP E
Sbjct: 280 LCKSD--KYC--EPHDYE-YCCPCEWHRTEHDRQLSEVENNIKKKACCC----EGFPFHE 330
Query: 356 IVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLR 415
++ +L + I + P + F + W Y +K+L +L+
Sbjct: 331 VIQEFLLNKDKLVKV-----IRYQRPDLLLFQRFTLEKMEWPNHYACEKLLVLLTHY--- 382
Query: 416 EMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEE 475
+M + + Q + I + +IR G + ++W+K E
Sbjct: 383 DMIERKLGSRNSNQLQPIRIVKTRIRNGVHCFEIEWEKP-------------------EH 423
Query: 476 FMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENERRELKRKRTSSLRSEESN 534
+ + H + + LLT E L +A+P+ V + + ++ E+K K+ ++ +E+N
Sbjct: 424 YAMEDKQHGE---FALLTIEEESLFEAAYPEIVAVY--QKQKLEIKGKKQKRIKPKENN 477
>sp|Q29FC1|GEN_DROPS Flap endonuclease GEN OS=Drosophila pseudoobscura pseudoobscura
GN=Gen PE=3 SV=1
Length = 754
Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 242/549 (44%), Gaps = 65/549 (11%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+A + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQARLARF---YRSTIDASTLPVAEEGILVERNQT-F 116
L + PVFV++G LK Q R +R + V++ +T F
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAKVDKGRTRF 118
Query: 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI 176
+++C LL G+ ++ GEAEA A LN G VD I+ DSD F +GA V +
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 177 RPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+T + Y + +I + + + +I M+LL G D+ +G+ GIG D L+
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDYCPDGIGGIGKDGVLK 238
Query: 230 FVQNFSEDEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTK 289
+ E EIL+ L W E ++ M + S CS CGH G
Sbjct: 239 LFNKYKESEILDRLRN---------W-----RAETDKYNALEMRVDDKSICSNCGHIGRT 284
Query: 290 RAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALET 349
++H K C C C+ +L KEQ+ + + K L
Sbjct: 285 QSHTKSGCSVCRTKRG-----------CDKTLW------KEQRLSIKAELILRRKALLAP 327
Query: 350 NFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPML 409
FPN+EI++ +L E ++ W P + + + W Y QK P+L
Sbjct: 328 EFPNEEIISEFLSEP----PTIPNLNLGWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPIL 383
Query: 410 STIYLREMA-TNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVD 468
+ +++ A TN + + Q D I++ ++ G S ++W+ + + G+
Sbjct: 384 TRWQVQQAARTNAIGRVELVQ-PVDIIKKRTVK-GVASLELRWQDPSGSFQGLI------ 435
Query: 469 SDLHLEEF-MEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENE---RRELKRKR 524
D + EF +E+P+ G T E + ++ +A+P V FL+ E ++ ++K+
Sbjct: 436 PDKQISEFELEHPK----GIEELYYTVEPLDMLEAAYPDLVASFLKSKEKPPKKATRKKK 491
Query: 525 TSSLRSEES 533
T L + E+
Sbjct: 492 TDPLSAIEN 500
>sp|Q9VRJ0|GEN_DROME Flap endonuclease GEN OS=Drosophila melanogaster GN=Gen PE=1 SV=1
Length = 726
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 134/530 (25%), Positives = 231/530 (43%), Gaps = 66/530 (12%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRT 60
MGV + W +L P+ + ++ LR K+VA+DL+ W+ + + P+ HL+ FFRT
Sbjct: 1 MGVK-ELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRHHLKNLFFRT 59
Query: 61 INLFAKFGAFPVFVVDGTPSPLKSQ--ARLARFYRSTIDASTLPVAEEGILVERNQ---T 115
L + PVFV++G LKSQ A+ + P + + ++
Sbjct: 60 CYLIWE-QVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGDKGRSR 118
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F +++C LL G+ ++ GEAEA CA LN G VD I+ DSD F +GA V +
Sbjct: 119 FNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRN 178
Query: 176 IRPNT-------KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTAL 228
+T + Y + +I + + ++ +I M+LL G D+ +G+ GIG D L
Sbjct: 179 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVL 238
Query: 229 QFVQNFSEDEILNILHKIGNGDIPQYWG-DIKSTEEAVSHSDESMPMIKSSHCSFCGHPG 287
+ + E EIL+ + + G+ +Y +I+ ++++ CS CGH G
Sbjct: 239 KLFNKYKETEILDRM-RSWRGETDKYNALEIRVDDKSI--------------CSNCGHIG 283
Query: 288 TKRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIAL 347
++H K C C C+ SL KEQ+ + + K L
Sbjct: 284 KTQSHTKSGCSVCRTHKG-----------CDESLW------KEQRLSIKSELTLRRKALL 326
Query: 348 ETNFPNDEIVTMYLCENNGTFTATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLP 407
+FPN+EI+ +L E + +++W P + + + W Y QK P
Sbjct: 327 SPDFPNEEIIAEFLSEPD----TIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFP 382
Query: 408 MLSTIYLREMATNPVQTLLCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPV 467
+L+ +++ + +L +E R VK G S ++W + G+
Sbjct: 383 ILTRWQVQQSKQ---EKILIQPHEIIKKRTVK---GVPSLELRWHDPSGIFKGL------ 430
Query: 468 DSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHFLQENER 517
+ ++ EY H G T E + ++ +A+P V FL+ E+
Sbjct: 431 ---IPDKQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEK 477
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica
GN=SEND1 PE=2 SV=1
Length = 641
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 7/246 (2%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRL-TFFR 59
MGV WD+L+ + L L++K+V VDLS W+VQ +A + + K + L F
Sbjct: 1 MGVK-NLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDA--STLPVAEEGILVERNQ--T 115
I +FV DG LK R + A S P + I + RN+
Sbjct: 60 RIRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSE 119
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F ++E L G+P L EAEA CA L+ E D C T+DSDAFLFGA+ V +
Sbjct: 120 FSCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRD 179
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
+ CY + DIE LG R LI++++L+G+D+ NGV G G +TA + V++
Sbjct: 180 VFIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYS-NGVNGFGPETACRLVKSVG 238
Query: 236 EDEILN 241
++ IL+
Sbjct: 239 DNLILD 244
>sp|Q9M2Z3|GENL2_ARATH Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2
SV=2
Length = 600
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 120/245 (48%), Gaps = 9/245 (3%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLT-FFR 59
MGV WD+L+P + LD L++KRV VDLS W+V+ K K + L FF
Sbjct: 1 MGVK-YLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFH 59
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKS---QARL-ARFYRSTIDASTLPVAEEGILVERNQT 115
+ + V DG +K + RL ARF D P E +
Sbjct: 60 RLRALIALNCSIILVSDGAIPGIKVPTYKRRLKARF--EIADDGVEPSKETSLKRNMGSE 117
Query: 116 FLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKC 175
F ++E + G+ L EAEA CA LNSE DAC + DSD FLFGAK V +
Sbjct: 118 FSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYRE 177
Query: 176 IRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFS 235
I CY + DI+ LGL R LIA++LL+G+D+ GV+G+ + A + V++
Sbjct: 178 ICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRGLRQEKACELVRSIG 236
Query: 236 EDEIL 240
++ IL
Sbjct: 237 DNVIL 241
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 159/380 (41%), Gaps = 55/380 (14%)
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFL--KCVQECVELLELF 130
F G P S+A + R +D + + +E +ERN + + EC ELL++F
Sbjct: 879 FEEKGVPVEF-SEANIEEEIR-VLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIF 936
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCIS 190
G+P + A EAEA CA + VD +T DSD FLFGA+ V K I + K E Y +
Sbjct: 937 GIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRK-YVETYFMK 995
Query: 191 DIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGD 250
DIE LGL R +I M++L+G+D+ G+ GIG+ A++ V F E++ L +
Sbjct: 996 DIEKELGLSRDKIIRMAMLLGSDY-TEGISGIGIVNAIEVVTAFPEEDGLQKFRE----- 1049
Query: 251 IPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYCINDNNEGCLK 310
W V D P I + G KR + I+
Sbjct: 1050 ----W---------VESPD---PTILGKTDAKTGSKVKKRGSASVDNKGIIS-----GAS 1088
Query: 311 KPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTA 370
D + +++R K +NW I + FP++ +++ YL N +
Sbjct: 1089 TDDTEEIKQIFMDQHR-----KVSKNWHIPLT--------FPSEAVISAYL--NPQVDLS 1133
Query: 371 TDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQY 430
T+ SWG P +L W + +LP+L RE Q + Y
Sbjct: 1134 TE--KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRE-----TQLRIEAFY 1186
Query: 431 EFDSIRRVKIRYGHQSYVVK 450
F+ R KIR + VK
Sbjct: 1187 SFNE-RFAKIRSKRINKAVK 1205
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAI---KKNSVPKPHLRLTF 57
MGV G W+LL P R ++ L +KR+A+D S W+VQ A+ K + V HL + F
Sbjct: 1 MGVQG-LWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHL-IGF 58
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVER 112
FR I P+FV DG LK + +AR + + + E +L+ R
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLLLNR 113
>sp|A6UX46|FEN_META3 Flap endonuclease 1 OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=fen PE=3 SV=1
Length = 326
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 21/229 (9%)
Query: 23 LRDKRVAVDLSYWIVQHETAIK----------KNSVPKPHLRLTFFRTINLFAKFGAFPV 72
L++K VA+D I Q ++I+ K + P+ + F++TI L P+
Sbjct: 19 LKNKTVAIDSMNIIYQFLSSIRLRDGAPLRNSKGEITSPYNGI-FYKTIYLLNN-EITPI 76
Query: 73 FVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQECV 124
+V DG P LK + R R + +A+ +E Q + K V C
Sbjct: 77 WVFDGKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINYLEPNTVDNCK 136
Query: 125 ELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPF 184
+LL+L G+P + A E EA CA + G ++ D DA L+GA V+ I + K P
Sbjct: 137 KLLKLMGIPYIDAPSEGEAQCAHMIKNGDAYCVVSQDYDALLYGAPRTVRNITASNK-PL 195
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQN 233
E I DI L + LI M++LIG D+++ G++GIG AL ++N
Sbjct: 196 ELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIKN 244
>sp|Q980U8|FEN_SULSO Flap endonuclease 1 OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=fen PE=1 SV=2
Length = 349
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 127/259 (49%), Gaps = 31/259 (11%)
Query: 9 DLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTFFR 59
DL+K R L+ KRV++D + Q AI++ + P HL F+R
Sbjct: 5 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYR 64
Query: 60 TINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDAS-TLPVAE-EGILVE---RNQ 114
TIN+ + G P++V DG P KS+ L R ++ +A L A+ EG + E +Q
Sbjct: 65 TINILEE-GVIPIYVFDGKPPEQKSE-ELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 122
Query: 115 TFLKC----VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAK 170
L+ V+E +LL G+P+++A E EA A LN G A + D DA LFGAK
Sbjct: 123 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 182
Query: 171 CVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
+V+ + K E + LG+ R+ LI + +LIG D++ +G+
Sbjct: 183 RLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGI 242
Query: 220 QGIGLDTALQFVQNFSEDE 238
+GIG + AL+ ++ + + E
Sbjct: 243 RGIGPERALKIIKKYGKIE 261
>sp|Q4JAN1|FEN_SULAC Flap endonuclease 1 OS=Sulfolobus acidocaldarius (strain ATCC 33909
/ DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=fen
PE=3 SV=2
Length = 349
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 133/274 (48%), Gaps = 36/274 (13%)
Query: 7 FWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPHLRLTF 57
++++ R L+ ++ K++++D I Q AI++ + P HL F
Sbjct: 3 LGEIVEDVKREINLNEMKGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLF 62
Query: 58 FRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPV-----AEEGILVER 112
+RTI++ G P+FV DG P P K + R R+ +A E + +
Sbjct: 63 YRTISIIES-GIIPIFVFDGKP-PEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKY 120
Query: 113 NQTFLKCVQECVE----LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFG 168
Q ++ E VE LL+ G+PV++A GE EA A +NS A + D D+ LFG
Sbjct: 121 AQAAVRLSNEMVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFG 180
Query: 169 AKCVVKCIRPNTKEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN 217
AK +V+ I + K E + + LG+ R+ LI +++LIG D++ +
Sbjct: 181 AKRLVRNITISGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPD 240
Query: 218 GVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI 251
GV+GIG+ TAL+ ++ ++ NI + I G+I
Sbjct: 241 GVKGIGVKTALRIIKKYN-----NIENAIEKGEI 269
>sp|Q9YFY5|FEN_AERPE Flap endonuclease 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=fen PE=3 SV=3
Length = 350
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 136/283 (48%), Gaps = 35/283 (12%)
Query: 3 VGGKFWDLLKPYARFE-GLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP--------KPH 52
+G +L+ P AR E L L +A+D + Q TAI++ + P H
Sbjct: 1 MGVNLRELIPPEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSH 60
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKS---QARLAR------FYRSTIDASTLPV 103
L F+RTINL + G PV+V DG P +KS + RL R YR ++A +
Sbjct: 61 LSGLFYRTINLVEE-GIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEE 119
Query: 104 AEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
A + ++ T V+E ELL+ GMP ++A E EA A + +G A + D D
Sbjct: 120 ARKYAMMAARLTS-DMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYD 178
Query: 164 AFLFGAKCVVK--CIRPNTKEPF---------ECYCISDIEAGLGLKRKHLIAMSLLIGN 212
+ LFG+ +V+ I K P E + + + LG+ R+ LIA+ +L+G
Sbjct: 179 SLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGT 238
Query: 213 DHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNGDI-PQY 254
D++ GV+G G TAL+ V++ + + +L + G+ P Y
Sbjct: 239 DYNPGGVRGYGPKTALRLVKSLGDP--MKVLASVPRGEYDPDY 279
>sp|Q5XIP6|FEN1_RAT Flap endonuclease 1 OS=Rattus norvegicus GN=Fen1 PE=2 SV=1
Length = 380
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV++ DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYIFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S + LGL ++ + + +L+G+D+ V+GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRVLQELGLNQEQFVDLCILLGSDY-CESVRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>sp|B3MDA3|FEN1_DROAN Flap endonuclease 1 OS=Drosophila ananassae GN=Fen1 PE=3 SV=1
Length = 388
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 20/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEG---ILVER-NQTFLKCVQE----CVELLEL 129
P LKS R R L A E +E+ N+ ++ +E ELL+L
Sbjct: 88 KPPDLKSGELAKRAERREEAEKALKAATEAGDDAEIEKFNRRLVRVTKEHAREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P ++A EAEA CA L G V A T D DA FG+ +++ + K P + +
Sbjct: 148 MGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GLG+ + I + +L+G D+ ++GIG A++ + N+ + E +
Sbjct: 208 SYEKLLDGLGVNNREFIDLCILLGCDY-CESIKGIGPKRAIELINNYRDIETILDNLDTS 266
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 267 KYTVPENW 274
>sp|B6AFP1|FEN1_CRYMR Flap endonuclease 1 OS=Cryptosporidium muris (strain RN66) GN=FEN1
PE=3 SV=1
Length = 472
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 31/257 (12%)
Query: 18 EGLDFLRDKRVAVDLSYWIVQHETAIKKNSV----------PKPHLRLTFFRTINLFAKF 67
+ +D L + +A+D S W+ Q AI++ S H+ RTI L +
Sbjct: 21 QSIDSLIGRIIAIDASMWMYQFLAAIREGSQWGNLTNEAGESTSHISGMLSRTIRLL-EA 79
Query: 68 GAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEGILVERNQTFLKCVQECVE- 125
G PVFV DG P LK + + R R L A EEG + ++ ++ E
Sbjct: 80 GIKPVFVFDGEPPELKMEELMKRKERREKAQQELEKAQEEGDTETIRKQLIRTIKITKEQ 139
Query: 126 ------LLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--- 176
+L+L G+PV++A EAEA CA+L EG V T D+D+ FG V++ +
Sbjct: 140 SDDVKYMLKLLGIPVIEATSEAEAQCAELCKEGLVYGVATEDADSLTFGTPLVIRHLNFS 199
Query: 177 -------RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
+ N+K + +S + + LGL + + + +L G D+ ++GIG TA +
Sbjct: 200 DGKFSDSKGNSKNSLQVIKLSTVLSDLGLSMQQFVDLCILCGCDY-CGTIRGIGALTAYK 258
Query: 230 FVQNFSEDE-ILNILHK 245
++ + E I+N L K
Sbjct: 259 LLKKHKDIETIINELDK 275
>sp|O93634|FEN_PYRFU Flap endonuclease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=fen PE=1 SV=1
Length = 340
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 29/242 (11%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K++A+D I Q + I+ K+ P HL F+RTINL + G
Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLK--------CVQE 122
PV+V DG P K + R A E +E + + + +++
Sbjct: 75 PVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIED 134
Query: 123 CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE 182
+LLEL G+P+++A E EA A + ++G V A + D D+ LFGA +V+ + K
Sbjct: 135 AKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKR 194
Query: 183 PF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV 231
E + ++ L L R+ LI +++L+G D++ G++GIGL AL+ V
Sbjct: 195 KLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIV 254
Query: 232 QN 233
++
Sbjct: 255 RH 256
>sp|P39749|FEN1_MOUSE Flap endonuclease 1 OS=Mus musculus GN=Fen1 PE=1 SV=1
Length = 378
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 22/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS-------VPKPHLRLTFFRTINLFAKFGAFPVFVVDGT 78
++VA+D S I Q A+++ L F+RTI + + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSLMGMFYRTIRM--ENGIKPVYVFDGK 86
Query: 79 PSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLELF 130
P LKS R R L A+E + E + F K + EC LL L
Sbjct: 87 PPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLM 146
Query: 131 GMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECYC 188
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 147 GIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFH 206
Query: 189 ISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKIG 247
+S + LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 207 LSRVLQELGLNQEQFVDLCILLGSDY-CESIRGIGAKRAVDLIQKHKSIEEIVRRLDP-S 264
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 265 KYPVPENW 272
>sp|P61942|FEN_NANEQ Flap endonuclease 1 OS=Nanoarchaeum equitans (strain Kin4-M) GN=fen
PE=3 SV=1
Length = 339
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVP--------KPH 52
MGV K +++ P + L K +A+D + Q +I+++ P H
Sbjct: 1 MGVNLK--EIVDPVKKEIEFKQLFGKVIAIDAFNALYQFLFSIRQDGEPLRDSKGRITSH 58
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDASTLPV 103
L F+RTINL ++G P++V DGTP K A +L Y+ + +
Sbjct: 59 LSGLFYRTINLL-EYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNI-- 115
Query: 104 AEEGILVERNQTFLKC--VQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
+E I ++ L V+E +LLE G+P ++A E EA A L +G D C + D
Sbjct: 116 -QEAIKYAKSLGKLDSYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQD 174
Query: 162 SDAFLFGAKCVVKCIRPNTKEPF---ECYC-----ISDIEAGLG---LKRKHLIAMSLLI 210
D+ LFG+ VV+ I + K Y + ++EA L + R+ LIA+++L+
Sbjct: 175 YDSLLFGSPRVVRNITISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLL 234
Query: 211 GNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIGNG 249
G D++ V GIG TA++ V+ F + + +KI NG
Sbjct: 235 GTDYN-EKVPGIGPKTAIEIVKRFGDPIKVIEYYKIPNG 272
>sp|B0EN90|FEN1_ENTDS Flap endonuclease 1 OS=Entamoeba dispar (strain ATCC PRA-260 /
SAW760) GN=FEN1 PE=3 SV=1
Length = 376
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 129/292 (44%), Gaps = 28/292 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNS---------V 48
MG+ G K P + EG +D + +A+D S + Q +A++ +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG 107
H+ TF+RTI L G PV+V DG P +K R + L A EEG
Sbjct: 61 TTSHIIGTFYRTIKLIES-GIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEG 119
Query: 108 ------ILVERNQTFLK-CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
L++R K E +LL+L G+P ++A EAE CA L G A T
Sbjct: 120 DKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCVEANCEAEGTCAALVKAGKCYATATE 179
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
D DA G++ VV+ N KEP Y +S I G + I + +L+G D+ +
Sbjct: 180 DMDALTLGSEYVVRKFSASDNKKEPIREYSLSSILEETGFSMEQFIDLCILLGCDY-CDT 238
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKIGNG-DIPQYWGDIKSTEEAVSHSD 269
++G+G TA + +Q + I N+L + + +P+ W K E H D
Sbjct: 239 IKGVGPITAFELIQQYK--SIENVLKHLSDKYKVPENW-KYKEARELFLHPD 287
>sp|B4KNM1|FEN1_DROMO Flap endonuclease 1 OS=Drosophila mojavensis GN=Fen1 PE=3 SV=1
Length = 388
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LK+ R R L VA +E + + N+ ++ +E ELL+L
Sbjct: 88 KPPDLKAGELAKRAERREEAEKALKVATDAGDEAEIEKFNRRLVRVTKEHSNEAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L K I + +L+G D+ + ++GIG A++ ++ + +I IL I
Sbjct: 208 SYDKVLQGLELTSKEFIDLCILMGCDY-CDSIKGIGPKRAIELIKTYR--DIETILENID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TSKYIVPENW 274
>sp|A7UW97|FEN1_NEUCR Flap endonuclease 1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fen-1
PE=3 SV=2
Length = 394
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 23/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNEAGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F A +++ KEP +
Sbjct: 148 MGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI- 246
+ + GLG++RK I + +L+G D+ L+ + +G TAL+ ++ E + K
Sbjct: 208 HLEKVLEGLGMERKQFIDLCILLGCDY-LDPIPKVGPSTALKLIREHGTLEKVVEWMKAD 266
Query: 247 --GNGDIPQYW 255
G IP+ W
Sbjct: 267 PKGRYQIPEDW 277
>sp|B4LM90|FEN1_DROVI Flap endonuclease 1 OS=Drosophila virilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LKS R R L A +E + + N+ ++ +E ELL+L
Sbjct: 88 QPPDLKSGELAKRAERREEAEKALKAATEAGDEAEIDKFNRRLVRVTKEHSREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCI--RPNTKEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L K I + +L+G D+ ++G+G A++ ++++ +I IL I
Sbjct: 208 SYDKVLQGLELTSKEFIDLCILMGCDY-CESIKGVGPKRAIELIKSYR--DIETILENID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TSKYPVPENW 274
>sp|A3DMG2|FEN_STAMF Flap endonuclease 1 OS=Staphylothermus marinus (strain ATCC 43588 /
DSM 3639 / F1) GN=fen PE=3 SV=1
Length = 350
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 131/277 (47%), Gaps = 36/277 (12%)
Query: 1 MGVGGKFWDLLKPYARF--EGLDFLRDKRVAVDLSYWIVQHETAIKK-NSVP-------- 49
MGV K DL+ A+ E L LR K V +D + Q TAI++ + P
Sbjct: 1 MGVNLK--DLIPEEAKMTIEDLRMLRGKIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRI 58
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQA---------RLARFYRSTIDAST 100
HL F+RTIN+ G P +V DG P +K++ ++ Y +
Sbjct: 59 TSHLSGLFYRTINILEN-GIKPAYVFDGKPPEIKAKEIEKRRKIREDASKKYEEALRKGD 117
Query: 101 LPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
+ A ++ T + VQ+ +LL+ G+P ++A E EA A + S+G A +
Sbjct: 118 IEAARRYAMMSAKLTD-EMVQDAKKLLDAMGIPWIQAPAEGEAQAAYIVSKGDAWASASQ 176
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCIS---------DIEAGLGLKRKHLIAMSLL 209
D D+ LFG+ +++ I K P + I + LGL R+ LI +++L
Sbjct: 177 DYDSLLFGSPRLIRNLTISGKRKLPRKNVYIEIKPEIIELKKLLEKLGLTREQLIYVAIL 236
Query: 210 IGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHK 245
IG D++ +GV+GIG ALQ V+ + D+IL I+ K
Sbjct: 237 IGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKIIPK 273
>sp|B3NP61|FEN1_DROER Flap endonuclease 1 OS=Drosophila erecta GN=Fen1 PE=3 SV=1
Length = 387
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCIRPNT--KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + N+ +I IL + + +P+ W
Sbjct: 242 GPKRAIELINNYR--DIETILDNLDSSKYTVPENW 274
>sp|D3TQJ5|FEN1_GLOMM Flap endonuclease 1 OS=Glossina morsitans morsitans GN=Fen1 PE=2
SV=1
Length = 382
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 26/251 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRAEGAQLTNVDGETTSHLMGMFYRTIRLLEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDAS-----TLPVAEEGILVERNQTFLKCVQE----CVELLE 128
P P+ LA+ DA E + + N+ +K +E ELL+
Sbjct: 88 KP-PISKSGELAKRAERREDAQKALEKATEAGNEADMDKFNRRLVKVTKEHANEAKELLK 146
Query: 129 LFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFEC 186
L G+P ++A EAEA CA L G V A T D DA FG+ +++ K P +
Sbjct: 147 LMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSGILLRHLTFSEARKMPVKE 206
Query: 187 YCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKI 246
+ + + G GL + I + +L+G D+ +G++GIG A + + ++ +I IL KI
Sbjct: 207 FSYAKVLDGFGLTSQEFIDLCILLGCDY-CDGIRGIGPKRATELMNSYK--DIETILEKI 263
Query: 247 GNGD--IPQYW 255
+P+ W
Sbjct: 264 DRKKYTVPEDW 274
>sp|C4M6G8|FEN1_ENTHI Flap endonuclease 1 OS=Entamoeba histolytica GN=FEN1 PE=3 SV=1
Length = 376
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 28/292 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNS---------V 48
MG+ G K P + EG +D + +A+D S + Q +A++ +
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 49 PKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA-EEG 107
H+ TF+RTI L G P++V DG P +K R + L A EEG
Sbjct: 61 TTSHIIGTFYRTIKLIES-GIKPIYVFDGKPPEMKDGELHKRKENAQKAQEQLDKALEEG 119
Query: 108 ------ILVERNQTFLK-CVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160
L++R K E +LL+L G+P ++A EAE CA L G A T
Sbjct: 120 DKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGTCAALVKAGKCYATATE 179
Query: 161 DSDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218
D DA G++ VV+ N K+P Y +S I G + I + +L+G D+
Sbjct: 180 DMDALTLGSEHVVRKFSANDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGCDY-CET 238
Query: 219 VQGIGLDTALQFVQNFSEDEILNILHKIGNG-DIPQYWGDIKSTEEAVSHSD 269
++G+G TA + +Q + I NIL + + +P+ W K E H D
Sbjct: 239 IKGVGPITAFELIQQYK--SIENILQHLSDKYKVPENW-KYKEARELFLHPD 287
>sp|B4J6M4|FEN1_DROGR Flap endonuclease 1 OS=Drosophila grimshawi GN=Fen1 PE=3 SV=1
Length = 388
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLAAVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P +KS R R L A +E + + N+ ++ +E ELL+L
Sbjct: 88 APPDMKSGELAKRAERRDEAEKALKAATEAGDEAQIEKFNRRLVRVTKEHSREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L K I + +L+G D+ ++G+G A++ ++++ +I IL I
Sbjct: 208 SYDKVLQGLELTSKEFIDLCILMGCDY-CESIRGVGPKRAIELIKSYR--DIETILENID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TNKYAVPENW 274
>sp|Q178M1|FEN1_AEDAE Flap endonuclease 1 OS=Aedes aegypti GN=Fen1 PE=3 SV=1
Length = 380
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 122/278 (43%), Gaps = 27/278 (9%)
Query: 1 MGVGG--KFWDLLKPYARFEG-LDFLRDKRVAVDLSYWIVQHETAIKKNSV--------P 49
MG+ G + L P+A EG + ++VA+D S + Q A++
Sbjct: 1 MGIKGLSQLIADLAPFAVKEGEIKNFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 50 KPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGIL 109
HL TF+RTI L G PV+V DG P LKS R + L A E +
Sbjct: 61 TSHLMGTFYRTIRLLEN-GIKPVYVFDGKPPDLKSGELTKRAEKREEAQKALDKATEAGV 119
Query: 110 VER----NQTFLKCVQ----ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITAD 161
E N+ +K + E ELL+L G+P + A EAEA CA L G V A T D
Sbjct: 120 TEDIDKFNRRLVKVTKQHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATATED 179
Query: 162 SDAFLFGAKCVVK--CIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGV 219
DA FG+ +++ K P + + I GL L R I + +L+G D+ + +
Sbjct: 180 MDALTFGSNILLRHLTFSEARKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDY-CDSI 238
Query: 220 QGIGLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
+GIG A++ + I IL + +P+ W
Sbjct: 239 RGIGPKKAVELINKHR--TIEKILENLDTKKYVVPENW 274
>sp|B4MR84|FEN1_DROWI Flap endonuclease 1 OS=Drosophila willistoni GN=Fen1 PE=3 SV=1
Length = 388
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 20/248 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LKS R R L A +E + + N+ ++ +E ELL+L
Sbjct: 88 KPPDLKSGELAKRAERREEAEKALKAATEAGDEAEIEKFNRRLVRVTKEHAREAKELLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSSKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL L ++ I + +L+G D+ ++GIG A++ + ++ + E +
Sbjct: 208 TYEKLLQGLELNQREFIDLCILLGCDY-CESIKGIGPKRAIELINSYRDIETILDNLDTS 266
Query: 248 NGDIPQYW 255
+P+ W
Sbjct: 267 KYTVPENW 274
>sp|B5DUR8|FEN1_DROPS Flap endonuclease 1 OS=Drosophila pseudoobscura pseudoobscura
GN=Fen1 PE=3 SV=1
Length = 386
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 20/273 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAE 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCIRPNT--KEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGDIPQYW 255
G A++ + N+ + E + +P+ W
Sbjct: 242 GPKRAIELINNYRDIETILDNLDTSKYTVPENW 274
>sp|B4GIM3|FEN1_DROPE Flap endonuclease 1 OS=Drosophila persimilis GN=Fen1 PE=3 SV=1
Length = 386
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 119/273 (43%), Gaps = 20/273 (7%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAE 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGDIPQYW 255
G A++ + N+ + E + +P+ W
Sbjct: 242 GPKRAIELINNYRDIETILDNLDTSKYTVPENW 274
>sp|B1L6R9|FEN_KORCO Flap endonuclease 1 OS=Korarchaeum cryptofilum (strain OPF8) GN=fen
PE=3 SV=1
Length = 342
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 57 FFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARF---------YRSTIDASTLPVAEEG 107
F+RT N F K G P++V DG KS+A R ++ ++ L A +
Sbjct: 63 FYRTAN-FLKEGIIPIYVFDGEKPSFKSRAIEERVRAREEAELKWKEALEIGDLEEARKY 121
Query: 108 ILVERNQTFLKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLF 167
N T V++C +L+L G+P+++A E EA A + +G V A + D D+ LF
Sbjct: 122 AQAALNITG-DIVEDCKTILKLMGVPIVQAPSEGEAQAAHMAMKGDVWATASQDYDSLLF 180
Query: 168 GAKCVVKCIRPNTKEPF---ECYC-----ISDIEAGL---GLKRKHLIAMSLLIGNDHDL 216
GA +++ + K E Y + ++E+ L G+ R+ LI + +L+G D++L
Sbjct: 181 GAPRLIRNLTITGKRKLPGKEVYVDINPELIELESVLKRNGISREQLIMIGILVGTDYNL 240
Query: 217 NGVQGIGLDTALQFVQNFSEDEIL 240
GV+GIG+ AL+ V+ + E L
Sbjct: 241 GGVKGIGVKRALELVKKYKRPEDL 264
>sp|B4P5U9|FEN1_DROYA Flap endonuclease 1 OS=Drosophila yakuba GN=Fen1 PE=3 SV=1
Length = 387
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S + Q A++ N P HL F+RTI L G PV+V DG
Sbjct: 29 RKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQE----CVELLEL 129
P LKS R R L A ++ + + N+ ++ +E ELL L
Sbjct: 88 KPPDLKSGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHANEAKELLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT--KEPFECY 187
G+P + A EAEA CA L G V A T D DA FG+ +++ + + K P + +
Sbjct: 148 MGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ GL + + I + +L+G D+ ++GIG A++ + N+ +I IL +
Sbjct: 208 SYEKLLEGLSINSREFIDLCILLGCDY-CESIKGIGPKRAIELINNYR--DIETILDNLD 264
Query: 248 NGD--IPQYW 255
+ +P+ W
Sbjct: 265 SSKYTVPENW 274
>sp|C7Z125|FEN1_NECH7 Flap endonuclease 1 OS=Nectria haematococca (strain 77-13-4 / ATCC
MYA-4622 / FGSC 9596 / MPVI) GN=FEN1 PE=3 SV=1
Length = 395
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 21/239 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNDSGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLAQAGKVYAAASEDMDTLCFNSPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHK 245
+ + GLG++RK + + +L+G D+ L+ + +G TAL+ +++ S ++I+ + K
Sbjct: 208 HLEKVLEGLGMERKQFVDLCILLGCDY-LDPIPKVGPTTALKLIRDHGSLEKIVEAMEK 265
>sp|C1BM18|FEN1_OSMMO Flap endonuclease 1 OS=Osmerus mordax GN=fen1 PE=2 SV=1
Length = 380
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++++ HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMCIYQFLIAVRQDGNVLQNEDGETTSHLMGMFYRTIRMLEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+E E F K + EC +LL L
Sbjct: 88 KPPQLKSGELEKRGERRAEAEKLLAQAQEAGEQENIDKFSKRLVKVTRQHNDECKKLLTL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A EAEA CA L G V A T D D FG +++ + + K P + +
Sbjct: 148 MGVPYVEAPCEAEASCAALVKAGKVFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEILNILHKI 246
S I +GL + I + +L+G D+ ++GIG A+ + Q+ S +EIL+ + +
Sbjct: 208 HFSRILQDIGLSHEQFIDLCILLGCDY-CGTIKGIGPKRAMDLIRQHGSIEEILDNID-L 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKHPVPEDW 274
>sp|A4QS18|FEN1_MAGO7 Flap endonuclease 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=FEN1 PE=3 SV=2
Length = 394
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 113/252 (44%), Gaps = 26/252 (10%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ N HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSNGEMLTNEDGQTTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R+ R L A E E + F + +EC +LL+L
Sbjct: 88 APPKLKSGELARRYQRKQEALEGLEEARETGTAEDVEKFSRRTVRVTREHNEECRQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F + +++ KEP +
Sbjct: 148 MGIPYIIAPTEAEAQCAVLARAGKVFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
+ + GL + RK + + +L+G D+ L+ + +G TAL+ ++ E I+ K+
Sbjct: 208 HVDKVLEGLDMDRKQFVDLCILLGCDY-LDPIPKVGPSTALKLIREHGSLE--TIVEKMK 264
Query: 248 NGD----IPQYW 255
G+ +P+ W
Sbjct: 265 KGELKYTVPEDW 276
>sp|A7RRJ0|FEN1_NEMVE Flap endonuclease 1 OS=Nematostella vectensis GN=FEN1 PE=3 SV=1
Length = 377
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 21/234 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
+++A+D S I Q A++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKIAIDASMSIYQFLIAVRSDGSQLTNEAGETTSHLMGLFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L AEE E F + + +EC +LL+L
Sbjct: 88 KPPQLKSGELAKRTERREEAQKALSKAEEAGDTENIDKFSRRLVRVTKEHNEECKQLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P ++A EAEA CA L G V A T D DA FG +++ K P + +
Sbjct: 148 MGIPYVEAPCEAEAQCAALVKSGKVYATGTEDMDALTFGTTVMLRHLTFSEAKKMPIKEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFV-QNFSEDEIL 240
+ ++ + GL + I + +L+G D+ + ++GIG ++ + Q+ S D+IL
Sbjct: 208 HLQNVLSEAGLSQDEFIDLCILLGCDY-CDSIKGIGPKRSVDLIRQHRSIDKIL 260
>sp|Q7K7A9|FEN1_DROME Flap endonuclease 1 OS=Drosophila melanogaster GN=Fen1 PE=2 SV=1
Length = 385
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + + +I IL + + +P+ W
Sbjct: 242 GPKRAIELINTYR--DIETILDNLDSSKYTVPENW 274
>sp|B4QIG6|FEN1_DROSI Flap endonuclease 1 OS=Drosophila simulans GN=Fen1 PE=3 SV=1
Length = 385
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + + +I IL + + +P+ W
Sbjct: 242 GPKRAIELINTYR--DIETILDNLDSSKYTVPENW 274
>sp|B4HTA1|FEN1_DROSE Flap endonuclease 1 OS=Drosophila sechellia GN=Fen1 PE=3 SV=1
Length = 385
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 24/275 (8%)
Query: 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPH 52
+G+ DL R + ++VA+D S + Q A++ N P H
Sbjct: 4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSH 63
Query: 53 LRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA----EEGI 108
L F+RTI L G PV+V DG P LKS R R L A ++
Sbjct: 64 LMGMFYRTIRLLDN-GIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAG 122
Query: 109 LVERNQTFLKCVQE----CVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDA 164
+ + N+ ++ +E ELL L G+P + A EAEA CA L G V A T D DA
Sbjct: 123 IEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDA 182
Query: 165 FLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGI 222
FG+ +++ + K P + + + GL + + I + +L+G D+ ++GI
Sbjct: 183 LTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDY-CESIKGI 241
Query: 223 GLDTALQFVQNFSEDEILNILHKIGNGD--IPQYW 255
G A++ + + +I IL + + +P+ W
Sbjct: 242 GPKRAIELINTYR--DIETILDNLDSSKYTVPENW 274
>sp|Q5ZLN4|FEN1_CHICK Flap endonuclease 1 OS=Gallus gallus GN=FEN1 PE=2 SV=1
Length = 381
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ + HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGAEVLQNEEGETTSHLMGMFYRTIRMVEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVA----EEGILVERNQTFLKCVQ----ECVELLEL 129
P LKS R R + L A EE + + ++ +K Q EC +LL L
Sbjct: 88 KPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLML 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P ++A GEAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYVEAPGEAEASCATLVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILHKIG 247
++ + LGL + + + +L+G D+ ++GIG A++ ++ I I+ I
Sbjct: 208 HLNRVLQDLGLTWEQFVDLCILLGCDY-CESIRGIGPKRAVELIKQHK--TIEEIIQHID 264
Query: 248 NGD--IPQYW 255
+P+ W
Sbjct: 265 TKKYPLPENW 274
>sp|Q54NU0|FEN1_DICDI Flap endonuclease 1 OS=Dictyostelium discoideum GN=repG PE=3 SV=1
Length = 384
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 13/205 (6%)
Query: 52 HLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVE 111
HL+ F+RTI L ++ G P++V DG+ LKS R R L A E E
Sbjct: 64 HLQGMFYRTIKLISR-GIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGTNE 122
Query: 112 RNQTFLKCV--------QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSD 163
Q F K V ++C++LL L G+P++KA EAEA CA++ +G A + D D
Sbjct: 123 EVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKAWATGSEDMD 182
Query: 164 AFLFGAKCVVKCI--RPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQG 221
+ G+ +++ + K P + + + GLGL + I +S+L+G D+ + ++G
Sbjct: 183 SLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGCDY-CDSIKG 241
Query: 222 IGLDTALQFVQNF-SEDEILNILHK 245
IG A++ +Q S +E++ L K
Sbjct: 242 IGPKRAIELIQKHKSLEEVIKHLDK 266
>sp|Q58DH8|FEN1_BOVIN Flap endonuclease 1 OS=Bos taurus GN=FEN1 PE=2 SV=1
Length = 380
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
>sp|A9VB27|FEN1_MONBE Flap endonuclease 1 OS=Monosiga brevicollis GN=FEN1 PE=3 SV=1
Length = 368
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 22/228 (9%)
Query: 23 LRDKRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFV 74
L D++VA+D S I Q AI+ HL F+RTI + G P++V
Sbjct: 26 LFDRKVAIDASMSIYQFLIAIRSEGSNLVNEAGEATSHLSGLFYRTIRM-VNHGIKPLYV 84
Query: 75 VDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVEL 126
DG P +KS L R R + L A E E+ + F + + ++C +L
Sbjct: 85 FDGKPPTMKSGELLKRGARRKEAQANLEEATEQGDTEQMEKFSRRLVHVTREHNEQCRQL 144
Query: 127 LELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPF 184
L L G+P + A EAEA CA+L G V A T D DA FG +++ K P
Sbjct: 145 LTLMGIPFIIAPTEAEAQCAELVKGGKVFATATEDMDALTFGTTVLLRHMTFSEARKMPI 204
Query: 185 ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQ 232
+ + + + GL + + I M +L+G D+ + ++GIG A Q ++
Sbjct: 205 QEFRLQ--KGGLEMSMEEFIDMCILLGCDY-CDSIKGIGRQKAYQLIK 249
>sp|O50123|FEN_PYRHO Flap endonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=fen PE=1
SV=1
Length = 343
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 34/250 (13%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L K++A+D I Q + I+ ++ P HL F+RTINL + G
Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAE---EGILVERNQTFLKC-------V 120
P +V DG P K + R R + + L E +G L E + + +
Sbjct: 75 PAYVFDGKPPEFKRKELEKR--REAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLI 132
Query: 121 QECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNT 180
++ +LL+L G+P+++A E EA A + S+G V A + D D+ LFGA +++ +
Sbjct: 133 EDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTITG 192
Query: 181 KEPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQ 229
K E + ++ L + R+ LI +++L+G D++ GV+GIG AL+
Sbjct: 193 KRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKALE 252
Query: 230 FVQNFSEDEI 239
V+ +S D +
Sbjct: 253 IVR-YSRDPL 261
>sp|D1ZT73|FEN1_SORMK Flap endonuclease 1 OS=Sordaria macrospora (strain ATCC MYA-333 /
DSM 997 / K(L3346) / K-hell) GN=FEN1 PE=3 SV=1
Length = 394
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 23/251 (9%)
Query: 26 KRVAVDLSYWIVQHETAIKKNSV--------PKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I A++ + HL F+RT+ + G P++V DG
Sbjct: 29 RKVAIDASMSIYSFLIAVRSDGQQLMNEAGETTSHLMGMFYRTLRMVDN-GIKPLYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS RF R L A+E E + F + EC +LL+L
Sbjct: 88 APPKLKSGELAKRFQRKQEATEGLEEAKETGTAEDVEKFSRRTVRVTREHNAECQKLLKL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVK--CIRPNTKEPFECY 187
G+P + A EAEA CA L G V A + D D F +++ KEP +
Sbjct: 148 MGIPYIVAPTEAEAQCAVLARAGKVYAAASEDMDTLCFHTPILLRHLTFSEQRKEPIQEI 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHKI 246
+ GLG+ RK + + +L+G D+ L+ + +G TAL+ ++ +E++ +
Sbjct: 208 HTDKVLEGLGMDRKQFVDLCILLGCDY-LDPIPKVGPSTALKLIREHGTLEEVVEWMKAD 266
Query: 247 GNG--DIPQYW 255
G IP+ W
Sbjct: 267 PKGRYQIPEDW 277
>sp|C6A1U9|FEN_THESM Flap endonuclease 1 OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=fen PE=3 SV=1
Length = 340
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 32/249 (12%)
Query: 20 LDFLRDKRVAVDLSYWIVQHETAIK-KNSVP--------KPHLRLTFFRTINLFAKFGAF 70
L+ L ++VA+D I Q + I+ K+ P HL F+RTINL + G
Sbjct: 16 LENLNGRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIK 74
Query: 71 PVFVVDGTPSPLKSQA--RLARFYRSTIDASTLPVAEEGILVERNQTFLKC-------VQ 121
P +V DG P K + + A ++ + +A G L E + + ++
Sbjct: 75 PAYVFDGKPPEFKKKELEKRAETREEALEKWEIALAR-GELEEAKKYAQRASKINEILIE 133
Query: 122 ECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK 181
+ +LLEL G+P ++A E EA A + S+G V A + D D+ LFG +V+ + K
Sbjct: 134 DAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLTITGK 193
Query: 182 EPF-----------ECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQF 230
E + D+ L L R+ LI +++L+G D++ G++G+G AL+
Sbjct: 194 RKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKKALEI 253
Query: 231 VQNFSEDEI 239
V+ +S+D +
Sbjct: 254 VK-YSKDPL 261
>sp|Q4R5U5|FEN1_MACFA Flap endonuclease 1 OS=Macaca fascicularis GN=FEN1 PE=2 SV=1
Length = 380
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 SKYPVPENW 274
>sp|P39748|FEN1_HUMAN Flap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1
Length = 380
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 26 KRVAVDLSYWIVQHETAIKKNS--------VPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77
++VA+D S I Q A+++ HL F+RTI + G PV+V DG
Sbjct: 29 RKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMEN-GIKPVYVFDG 87
Query: 78 TPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTFLKCV--------QECVELLEL 129
P LKS R R L A+ + + F K + EC LL L
Sbjct: 88 KPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSL 147
Query: 130 FGMPVLKAKGEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECY 187
G+P L A EAEA CA L G V A T D D FG+ +++ + + K P + +
Sbjct: 148 MGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEF 207
Query: 188 CISDIEAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNF-SEDEILNILHKI 246
+S I LGL ++ + + +L+G+D+ ++GIG A+ +Q S +EI+ L
Sbjct: 208 HLSRILQELGLNQEQFVDLCILLGSDY-CESIRGIGPKRAVDLIQKHKSIEEIVRRLDP- 265
Query: 247 GNGDIPQYW 255
+P+ W
Sbjct: 266 NKYPVPENW 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,598,699
Number of Sequences: 539616
Number of extensions: 9988096
Number of successful extensions: 26059
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 25418
Number of HSP's gapped (non-prelim): 333
length of query: 602
length of database: 191,569,459
effective HSP length: 123
effective length of query: 479
effective length of database: 125,196,691
effective search space: 59969214989
effective search space used: 59969214989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)