Query 044842
Match_columns 602
No_of_seqs 280 out of 1445
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ory_A Flap endonuclease 1; hy 100.0 1.4E-58 4.7E-63 491.9 24.3 303 1-413 11-345 (363)
2 3q8k_A Flap endonuclease 1; he 100.0 8.4E-56 2.9E-60 467.2 29.9 305 2-412 1-331 (341)
3 1b43_A Protein (FEN-1); nuclea 100.0 3.5E-56 1.2E-60 470.0 25.7 295 1-412 1-326 (340)
4 1ul1_X Flap endonuclease-1; pr 100.0 1.1E-53 3.8E-58 457.1 21.9 321 2-432 1-345 (379)
5 1a76_A Flap endonuclease-1 pro 100.0 8E-53 2.8E-57 442.0 26.3 293 1-413 1-313 (326)
6 1rxw_A Flap structure-specific 100.0 1.8E-51 6.1E-56 433.5 30.5 295 1-410 1-324 (336)
7 2izo_A FEN1, flap structure-sp 100.0 5.4E-51 1.8E-55 431.5 24.4 300 9-413 2-331 (346)
8 3qe9_Y Exonuclease 1; exonucle 100.0 1.6E-51 5.3E-56 436.3 20.1 242 1-246 1-260 (352)
9 1bgx_T TAQ DNA polymerase; DNA 100.0 5.2E-36 1.8E-40 347.4 -9.8 206 17-243 4-221 (832)
10 1exn_A 5'-exonuclease, 5'-nucl 100.0 1.4E-32 4.9E-37 283.4 16.3 212 7-246 4-236 (290)
11 3h7i_A Ribonuclease H, RNAse H 99.7 8.1E-18 2.8E-22 173.1 10.9 175 24-225 12-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 98.4 2.7E-06 9.1E-11 101.4 15.8 222 1-224 1-298 (1140)
13 3pie_A 5'->3' exoribonuclease 98.2 2E-06 6.9E-11 101.6 9.1 221 1-224 1-301 (1155)
14 3fqd_A Protein DHP1, 5'-3' exo 97.9 3.7E-05 1.3E-09 88.7 11.3 196 27-224 54-349 (899)
15 3mts_A Histone-lysine N-methyl 93.2 0.16 5.4E-06 40.6 5.9 60 432-526 3-62 (64)
16 1ap0_A Modifier protein 1; chr 88.7 0.59 2E-05 38.1 5.1 28 427-454 11-38 (73)
17 3lwe_A M-phase phosphoprotein 88.2 1.1 3.8E-05 35.2 6.3 56 429-518 4-59 (62)
18 2a1j_A DNA repair endonuclease 86.4 0.39 1.3E-05 37.9 2.7 20 217-236 7-26 (63)
19 1ixr_A Holliday junction DNA h 85.8 0.52 1.8E-05 45.4 3.8 27 218-244 76-102 (191)
20 3f2u_A Chromobox protein homol 85.5 1.3 4.4E-05 33.9 5.2 25 429-453 2-26 (55)
21 1x2i_A HEF helicase/nuclease; 85.0 0.51 1.7E-05 37.5 2.8 24 217-240 17-41 (75)
22 1kft_A UVRC, excinuclease ABC 84.2 0.3 1E-05 39.8 1.1 24 217-240 27-51 (78)
23 1z00_A DNA excision repair pro 84.0 0.71 2.4E-05 38.5 3.4 24 217-240 22-46 (89)
24 1q3l_A Heterochromatin protein 83.3 1.8 6.1E-05 35.0 5.3 26 428-453 15-40 (69)
25 1cuk_A RUVA protein; DNA repai 82.9 0.8 2.7E-05 44.5 3.7 27 218-244 77-103 (203)
26 1z00_B DNA repair endonuclease 81.9 0.93 3.2E-05 38.0 3.2 23 217-239 21-44 (84)
27 1pfb_A Polycomb protein; chrom 81.1 1.9 6.6E-05 32.9 4.6 25 429-453 3-27 (55)
28 2a1j_B DNA excision repair pro 80.4 0.98 3.4E-05 37.8 2.9 24 217-240 35-59 (91)
29 3i91_A Chromobox protein homol 79.8 2.8 9.7E-05 31.8 5.1 25 429-453 3-27 (54)
30 3fdt_A Chromobox protein homol 79.1 2.4 8.4E-05 32.8 4.6 25 429-453 3-27 (59)
31 2ztd_A Holliday junction ATP-d 77.4 1.5 5.3E-05 42.9 3.7 46 193-244 73-118 (212)
32 3vdp_A Recombination protein R 77.3 0.79 2.7E-05 44.8 1.5 18 217-234 29-46 (212)
33 2d9u_A Chromobox protein homol 75.6 2.4 8E-05 34.5 3.8 27 428-454 9-35 (74)
34 2kvm_A Chromobox protein homol 75.5 5.4 0.00018 32.3 5.9 26 428-453 12-37 (74)
35 1vdd_A Recombination protein R 74.8 1 3.5E-05 44.5 1.6 18 217-234 15-32 (228)
36 2k1b_A Chromobox protein homol 74.2 3.1 0.00011 33.9 4.1 27 427-453 19-45 (73)
37 2nrt_A Uvrabc system protein C 73.0 1.5 5.1E-05 43.2 2.3 20 217-236 171-190 (220)
38 1pdq_A Polycomb protein; methy 71.6 4.3 0.00015 33.0 4.3 27 427-453 18-44 (72)
39 3h91_A Chromobox protein homol 68.9 6.9 0.00024 29.6 4.8 25 429-453 3-27 (54)
40 2fmm_A Chromobox protein homol 68.4 7.6 0.00026 31.6 5.2 55 426-515 12-66 (74)
41 3kup_A Chromobox protein homol 65.5 8.8 0.0003 30.4 4.9 53 428-515 11-63 (65)
42 2dnv_A Chromobox protein homol 64.0 2.6 8.8E-05 33.3 1.5 27 428-454 9-35 (64)
43 2zvv_Y Cyclin-dependent kinase 63.7 2.4 8.2E-05 27.3 1.0 15 543-557 3-17 (26)
44 2dnt_A Chromodomain protein, Y 63.4 5.8 0.0002 32.4 3.6 27 428-454 12-39 (78)
45 3c65_A Uvrabc system protein C 62.1 1.6 5.5E-05 43.1 0.0 23 217-239 176-199 (226)
46 3v32_B Ribonuclease ZC3H12A; r 60.5 47 0.0016 31.6 9.9 102 25-162 24-134 (185)
47 2bgw_A XPF endonuclease; hydro 58.5 4 0.00014 39.4 2.1 20 217-236 165-184 (219)
48 1g6z_A CLR4 protein; transfera 54.3 7.2 0.00025 31.2 2.6 26 428-453 7-34 (70)
49 2rsn_A Chromo domain-containin 50.7 35 0.0012 27.7 6.2 27 428-454 20-47 (75)
50 3g7l_A Chromo domain-containin 49.3 30 0.001 26.8 5.4 26 428-453 6-32 (61)
51 3i3c_A Chromobox protein homol 48.3 26 0.00088 28.6 5.0 55 426-515 19-73 (75)
52 3q6s_A Chromobox protein homol 47.8 25 0.00085 28.9 4.9 53 429-516 9-61 (78)
53 3v33_A Ribonuclease ZC3H12A; r 46.6 77 0.0026 31.1 9.0 102 25-162 24-134 (223)
54 2b2y_A CHD-1, chromodomain-hel 44.7 24 0.00082 33.6 5.0 51 431-514 132-185 (187)
55 2duy_A Competence protein come 44.4 9.7 0.00033 30.4 1.9 18 217-234 30-47 (75)
56 3p7j_A Heterochromatin protein 44.2 37 0.0013 28.6 5.5 56 426-516 22-77 (87)
57 2h1e_A Chromo domain protein 1 42.5 21 0.00073 33.7 4.2 53 428-513 119-176 (177)
58 2rso_A Chromatin-associated pr 39.2 35 0.0012 28.7 4.7 26 428-453 29-56 (92)
59 2epb_A Chromodomain-helicase-D 37.8 38 0.0013 26.9 4.4 27 427-453 9-41 (68)
60 4gfj_A Topoisomerase V; helix- 37.6 17 0.0006 39.0 3.0 23 217-239 471-494 (685)
61 2w9m_A Polymerase X; SAXS, DNA 36.5 22 0.00076 39.4 3.9 27 217-243 100-128 (578)
62 1s5l_U Photosystem II 12 kDa e 32.7 14 0.00049 33.5 1.2 16 217-232 66-81 (134)
63 3b0x_A DNA polymerase beta fam 31.1 31 0.001 38.2 3.8 26 218-243 97-125 (575)
64 2ee1_A Chromodomain helicase-D 31.0 19 0.00066 28.5 1.6 28 427-454 9-37 (64)
65 2xry_A Deoxyribodipyrimidine p 29.1 99 0.0034 33.2 7.4 44 117-160 91-134 (482)
66 1x3p_A Cpsrp43; chromo-2 domai 26.1 2 6.9E-05 32.9 -4.8 21 433-453 4-26 (54)
67 2ziu_A MUS81 protein; helix-ha 23.9 51 0.0017 33.3 3.7 30 217-246 240-270 (311)
68 2bcq_A DNA polymerase lambda; 23.8 45 0.0015 34.5 3.3 24 217-241 99-125 (335)
69 3tvs_A Cryptochrome-1; circadi 23.3 96 0.0033 34.1 6.0 43 117-159 60-105 (538)
70 1vq8_Y 50S ribosomal protein L 23.3 17 0.00059 36.0 0.0 21 216-236 17-38 (241)
71 2wq7_A RE11660P; lyase-DNA com 22.9 1.2E+02 0.0043 33.1 6.8 43 117-159 88-130 (543)
72 2ztd_A Holliday junction ATP-d 22.8 34 0.0012 33.2 2.0 21 216-236 125-145 (212)
73 1jms_A Terminal deoxynucleotid 22.2 48 0.0016 34.9 3.2 19 217-236 124-142 (381)
74 2edu_A Kinesin-like protein KI 21.7 41 0.0014 28.2 2.0 19 217-235 43-61 (98)
75 2fmp_A DNA polymerase beta; nu 21.1 45 0.0015 34.4 2.6 24 217-241 101-127 (335)
76 3maj_A DNA processing chain A; 20.8 95 0.0032 32.8 5.1 43 197-246 16-59 (382)
77 3umv_A Deoxyribodipyrimidine p 20.7 1.6E+02 0.0054 32.1 7.0 42 117-159 94-135 (506)
78 3sgi_A DNA ligase; HET: DNA AM 20.5 21 0.00073 40.1 0.0 23 218-240 533-556 (615)
79 2ihm_A POL MU, DNA polymerase 20.2 53 0.0018 34.3 3.0 19 217-236 105-123 (360)
No 1
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=1.4e-58 Score=491.87 Aligned_cols=303 Identities=25% Similarity=0.354 Sum_probs=251.4
Q ss_pred CCCCCcChhhhc-cccccc-CccccCCCEEEEeHHHHHHHHhccccC---------CCCCChHHHHHHHHHHHHHHhCCC
Q 044842 1 MGVGGKFWDLLK-PYARFE-GLDFLRDKRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGA 69 (602)
Q Consensus 1 MGV~G~Lw~~Lk-p~~~~~-~Ls~L~gk~IAIDas~wL~r~~~a~~~---------~g~~~~~Lr~~f~r~l~lL~~~gI 69 (602)
||| | ||++|+ ++.+.+ +|++|+|++|||||++||||++++++. .|.++++|+++|.|+++++ .+||
T Consensus 11 MGv-~-L~~ll~~~~~~~~~~l~~l~gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll-~~~i 87 (363)
T 3ory_A 11 MGV-D-LKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIV-EAGI 87 (363)
T ss_dssp CSC-C-CGGGCCGGGEEECSSGGGGTTCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHH-HTTC
T ss_pred cCc-C-HHHHhhHhcccccCCHHHhCCCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHH-HcCC
Confidence 999 8 999999 455777 999999999999999999998887641 6888999999999999987 5899
Q ss_pred eEEEEEcCCCCcchhHHHHHhhhccccc-cccchHHHhccchhhhHHH-------HHhHHHHHHHHHHcCCCEEeccCcH
Q 044842 70 FPVFVVDGTPSPLKSQARLARFYRSTID-ASTLPVAEEGILVERNQTF-------LKCVQECVELLELFGMPVLKAKGEA 141 (602)
Q Consensus 70 ~PVfVFDG~~p~~K~~t~~kR~~R~~~~-~~~~~~~k~g~~~e~~~~f-------~~~i~~~~~lL~~~GI~~i~AP~EA 141 (602)
+|+|||||.+|++|+++..+|..++... .......+.|...++...| ..++..++++|++|||||++|||||
T Consensus 88 ~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgEA 167 (363)
T 3ory_A 88 KPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEG 167 (363)
T ss_dssp EEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSCH
T ss_pred CcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCccH
Confidence 9999999999999999888776544211 1111122334333333333 2468999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEcCCCCeEeeCCeEEEEecCCCCC------C-----CeEEEeHHHHHHHhCCCHHHHHHHHHHc
Q 044842 142 EALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTK------E-----PFECYCISDIEAGLGLKRKHLIAMSLLI 210 (602)
Q Consensus 142 DAqcA~L~~~g~vd~ViT~DSD~llfG~~~Vi~~~~~~~k------~-----~~~~y~~~~i~~~lgL~~~qli~laiL~ 210 (602)
|||||+|++.|++++|+|+|+|+|+||+++|+++++..++ + .+++|+.+.+.+.+|++++||+++|+|+
T Consensus 168 DaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~ 247 (363)
T 3ory_A 168 EAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILL 247 (363)
T ss_dssp HHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999875421 1 1378999999999999999999999999
Q ss_pred CCCCCCC-CCCcccHHHHHHHHHhcCh-HHHHHHHHhhCCCCCCCCcCCccchhhhhcCCCCCCccccCCCCccCCCCCC
Q 044842 211 GNDHDLN-GVQGIGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGT 288 (602)
Q Consensus 211 G~DY~~~-GipGIG~ktA~~Li~~~~~-e~iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~Cs~C~h~gs 288 (602)
||||+ | ||||||+|||++||++||+ ++|++++.
T Consensus 248 GsDy~-p~GVpGIG~KtA~kLl~~~gsle~il~~~~-------------------------------------------- 282 (363)
T 3ory_A 248 GTDYN-PDGFEGIGPKKALQLVKAYGGIEKIPKPIL-------------------------------------------- 282 (363)
T ss_dssp CBTTB-TTCSTTCCHHHHHHHHHHHTSSTTSCGGGC--------------------------------------------
T ss_pred CCCCC-CCCCCCcCHHHHHHHHHHcCCHHHHHHhcc--------------------------------------------
Confidence 99997 8 9999999999999999995 33321100
Q ss_pred ccccccccccccccCCCCCCCCCCCCCccccccchhhhhHHHHhhhhhhhHhhhcccccCCCCCCHHHHHHHhccCCCCC
Q 044842 289 KRAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTF 368 (602)
Q Consensus 289 ~k~h~k~gc~~C~~~~~~gc~~~~~~~~c~c~~~~~~r~~k~~~~~~~~~~~~~~k~~~~~~FP~~~Vi~~yl~p~v~~~ 368 (602)
+. .-+||..+|+++|++|.|.
T Consensus 283 -------------------------------------------------------~~--~~~~~~~~~~~~f~~p~v~-- 303 (363)
T 3ory_A 283 -------------------------------------------------------KS--PIEVDVIAIKKYFLQPQVT-- 303 (363)
T ss_dssp -------------------------------------------------------CC--SSCCCHHHHHHHHHSCCCC--
T ss_pred -------------------------------------------------------cc--cCCCCHHHHHHHhcCCCCC--
Confidence 00 0137889999999999982
Q ss_pred CCCCCCCcccCCCCHHHHHHHHhhhCCCChhHHhhhHhhHHHhHH
Q 044842 369 TATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413 (602)
Q Consensus 369 ~~~~~~~~~W~~Pdl~~L~~f~~~~~~W~~~~~~e~llPll~~~~ 413 (602)
+...|+|+.||+++|++||+++++|+++++++.|.||.+.++
T Consensus 304 ---~~~~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~ 345 (363)
T 3ory_A 304 ---DNYRIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFK 345 (363)
T ss_dssp ---SCCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Confidence 234699999999999999999999999999999999998765
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=8.4e-56 Score=467.22 Aligned_cols=305 Identities=28% Similarity=0.453 Sum_probs=255.4
Q ss_pred CCCCcChhhhcccc----cccCccccCCCEEEEeHHHHHHHHhccccC--------CCCCChHHHHHHHHHHHHHHhCCC
Q 044842 2 GVGGKFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGA 69 (602)
Q Consensus 2 GV~G~Lw~~Lkp~~----~~~~Ls~L~gk~IAIDas~wL~r~~~a~~~--------~g~~~~~Lr~~f~r~l~lL~~~gI 69 (602)
||+| ||++|++++ +..+|++++|++||||||+||||++++++. .|.++++++++|.++++++ +++|
T Consensus 1 GI~G-L~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g~~~~~~~ll-~~~i 78 (341)
T 3q8k_A 1 GIQG-LAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMM-ENGI 78 (341)
T ss_dssp CCTT-HHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHHHHHHHHHHH-TTTC
T ss_pred Cchh-HHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHHHHHHHHHHH-HCCC
Confidence 9999 999999875 678999999999999999999999998751 6889999999999998866 5799
Q ss_pred eEEEEEcCCCCcchhHHHHHhhhccccccccchHHHhccchhhhHHH-----------HHhHHHHHHHHHHcCCCEEecc
Q 044842 70 FPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVAEEGILVERNQTF-----------LKCVQECVELLELFGMPVLKAK 138 (602)
Q Consensus 70 ~PVfVFDG~~p~~K~~t~~kR~~R~~~~~~~~~~~k~g~~~e~~~~f-----------~~~i~~~~~lL~~~GI~~i~AP 138 (602)
+|+|||||.++++|+++..+|..++......+..+.+.+ .++.+ ..++..++++|++|||||++||
T Consensus 79 ~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~---~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap 155 (341)
T 3q8k_A 79 KPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAG---AEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAP 155 (341)
T ss_dssp EEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECS
T ss_pred CceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcC---CHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECC
Confidence 999999999999999988877654421111111111111 22333 5688999999999999999999
Q ss_pred CcHHHHHHHHHHcCCeeEEEcCCCCeEeeCCeEEEEecCCC--CCCCeEEEeHHHHHHHhCCCHHHHHHHHHHcCCCCCC
Q 044842 139 GEAEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDL 216 (602)
Q Consensus 139 ~EADAqcA~L~~~g~vd~ViT~DSD~llfG~~~Vi~~~~~~--~k~~~~~y~~~~i~~~lgL~~~qli~laiL~G~DY~~ 216 (602)
||||||||+|++.|.|++|+|+|+|+|+||++.|+++++.+ .+.+++.|+.+.+.+.+|++++||+++|+|+||||+
T Consensus 156 ~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~- 234 (341)
T 3q8k_A 156 SEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYC- 234 (341)
T ss_dssp SCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSS-
T ss_pred ccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCC-
Confidence 99999999999999999999999999999999999987543 223578999999999999999999999999999997
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHHHHHHHhhCCCCCCCCcCCccchhhhhcCCCCCCccccCCCCccCCCCCCccccccc
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKF 295 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~Cs~C~h~gs~k~h~k~ 295 (602)
+||||||+|||++||++||+ ++|++++++.
T Consensus 235 ~gipGiG~KtA~kll~~~gsle~i~~~~~~~------------------------------------------------- 265 (341)
T 3q8k_A 235 ESIRGIGPKRAVDLIQKHKSIEEIVRRLDPN------------------------------------------------- 265 (341)
T ss_dssp CCCTTCCHHHHHHHHHHHCSHHHHHHHSCTT-------------------------------------------------
T ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHHHHhc-------------------------------------------------
Confidence 99999999999999999996 7777653210
Q ss_pred cccccccCCCCCCCCCCCCCccccccchhhhhHHHHhhhhhhhHhhhcccccCCCCCCHHHHHHHhccCCCCCCCCCCCC
Q 044842 296 SCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPS 375 (602)
Q Consensus 296 gc~~C~~~~~~gc~~~~~~~~c~c~~~~~~r~~k~~~~~~~~~~~~~~k~~~~~~FP~~~Vi~~yl~p~v~~~~~~~~~~ 375 (602)
+..++++||+.++.+.|++|.|. +.....
T Consensus 266 ------------------------------------------------k~~~~~~~~~~~~r~l~l~~~V~---~~~~~~ 294 (341)
T 3q8k_A 266 ------------------------------------------------KYPVPENWLHKEAHQLFLEPEVL---DPESVE 294 (341)
T ss_dssp ------------------------------------------------TSCCCTTCCHHHHHHHHHSCCCC---CTTTSC
T ss_pred ------------------------------------------------CCCCCcccchHHHHHHhCCCCCC---CCcccc
Confidence 01236788888999999999973 222368
Q ss_pred cccCCCCHHHHHHHHhhhCCCChhHHhhhHhhHHHhH
Q 044842 376 ISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTI 412 (602)
Q Consensus 376 ~~W~~Pdl~~L~~f~~~~~~W~~~~~~e~llPll~~~ 412 (602)
|.|+.||.++|++|++++++|++++++..+-+|.+..
T Consensus 295 l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~ 331 (341)
T 3q8k_A 295 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSR 331 (341)
T ss_dssp CCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887654
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=3.5e-56 Score=470.01 Aligned_cols=295 Identities=27% Similarity=0.420 Sum_probs=249.4
Q ss_pred CCCCCcChhhhcccccccCccccCCCEEEEeHHHHHHHHhcccc---------CCCCCChHHHHHHHHHHHHHHhCCCeE
Q 044842 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHLRLTFFRTINLFAKFGAFP 71 (602)
Q Consensus 1 MGV~G~Lw~~Lkp~~~~~~Ls~L~gk~IAIDas~wL~r~~~a~~---------~~g~~~~~Lr~~f~r~l~lL~~~gI~P 71 (602)
||| | ||+|| ..++.+|+.++|++|||||++||||++++++ ..|.+++++.++|.++++++ ++||+|
T Consensus 1 MGI-g-L~~~l--~~~~~~l~~l~g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll-~~~i~p 75 (340)
T 1b43_A 1 MGV-P-IGEII--PRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLM-EAGIKP 75 (340)
T ss_dssp -CC-C-CGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHH-HTTCEE
T ss_pred CCC-C-hHHHh--cccccCHHHhCCCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHH-hCCCEE
Confidence 999 9 99999 7788999999999999999999999998875 15788999999999988876 599999
Q ss_pred EEEEcCCCCcchhHHHHHhhhcccccc-ccchHHHhccchhhhHHH--------HHhHHHHHHHHHHcCCCEEeccCcHH
Q 044842 72 VFVVDGTPSPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQTF--------LKCVQECVELLELFGMPVLKAKGEAE 142 (602)
Q Consensus 72 VfVFDG~~p~~K~~t~~kR~~R~~~~~-~~~~~~k~g~~~e~~~~f--------~~~i~~~~~lL~~~GI~~i~AP~EAD 142 (602)
||||||.+++.|+.+..+|..++.... .+...+++|+. +.+..| ..++..++++|+.|||||++||||||
T Consensus 76 v~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~-~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EAD 154 (340)
T 1b43_A 76 VYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEI-EEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGE 154 (340)
T ss_dssp EEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCH-HHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHH
T ss_pred EEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcChhHH
Confidence 999999999999988877776552222 12223455543 334455 57889999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCCeEeeCCeEEEEecCCCCCC-----------CeEEEeHHHHHHHhCCCHHHHHHHHHHcC
Q 044842 143 ALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE-----------PFECYCISDIEAGLGLKRKHLIAMSLLIG 211 (602)
Q Consensus 143 AqcA~L~~~g~vd~ViT~DSD~llfG~~~Vi~~~~~~~k~-----------~~~~y~~~~i~~~lgL~~~qli~laiL~G 211 (602)
||||+|++.|++++|+|+|+|+|+||+++|+++++..++. .+++|+.+.+.+.+|++++||+++|+|+|
T Consensus 155 a~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G 234 (340)
T 1b43_A 155 AQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVG 234 (340)
T ss_dssp HHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998754321 34689999999999999999999999999
Q ss_pred CCCCCC-CCCcccHHHHHHHHHhcCh-HHHHHHHHhhCCCCCCCCcCCccchhhhhcCCCCCCccccCCCCccCCCCCCc
Q 044842 212 NDHDLN-GVQGIGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTK 289 (602)
Q Consensus 212 ~DY~~~-GipGIG~ktA~~Li~~~~~-e~iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~Cs~C~h~gs~ 289 (602)
|||+ | ||||||+|||++||++||+ ++|+++
T Consensus 235 ~Dy~-p~gv~GiG~ktA~kli~~~gsle~il~~----------------------------------------------- 266 (340)
T 1b43_A 235 TDYN-PGGIKGIGLKKALEIVRHSKDPLAKFQK----------------------------------------------- 266 (340)
T ss_dssp CTTS-TTCSTTCCHHHHHHHHHTCSSGGGGTGG-----------------------------------------------
T ss_pred CCCC-CCCCCCccHHHHHHHHHHcCCHHHHHcC-----------------------------------------------
Confidence 9996 8 9999999999999999985 222110
Q ss_pred cccccccccccccCCCCCCCCCCCCCccccccchhhhhHHHHhhhhhhhHhhhcccccCCCCCCHHHHHHHhccCCCCCC
Q 044842 290 RAHFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFT 369 (602)
Q Consensus 290 k~h~k~gc~~C~~~~~~gc~~~~~~~~c~c~~~~~~r~~k~~~~~~~~~~~~~~k~~~~~~FP~~~Vi~~yl~p~v~~~~ 369 (602)
+++||..++.++|++|.+.
T Consensus 267 ----------------------------------------------------------~~~~~~~~~~~~~~~~~v~--- 285 (340)
T 1b43_A 267 ----------------------------------------------------------QSDVDLYAIKEFFLNPPVT--- 285 (340)
T ss_dssp ----------------------------------------------------------GCSSCHHHHHHHHHSCCCC---
T ss_pred ----------------------------------------------------------CCCccHHHHHHHHhCCCCC---
Confidence 3455666788899999762
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhhCCCChhHHhhhHhhHHHhH
Q 044842 370 ATDGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTI 412 (602)
Q Consensus 370 ~~~~~~~~W~~Pdl~~L~~f~~~~~~W~~~~~~e~llPll~~~ 412 (602)
+...+.|+.||.+.|++|++++++|+++++++.+.|+.+..
T Consensus 286 --d~~~~~~~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~ 326 (340)
T 1b43_A 286 --DNYNLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAI 326 (340)
T ss_dssp --CCCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHH
T ss_pred --CcccCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Confidence 25689999999999999999999999999999999998765
No 4
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.1e-53 Score=457.07 Aligned_cols=321 Identities=28% Similarity=0.447 Sum_probs=248.6
Q ss_pred CCCCcChhhhcccc----cccCccccCCCEEEEeHHHHHHHHhccccC--------CCCCChHHHHHHHHHHHHHHhCCC
Q 044842 2 GVGGKFWDLLKPYA----RFEGLDFLRDKRVAVDLSYWIVQHETAIKK--------NSVPKPHLRLTFFRTINLFAKFGA 69 (602)
Q Consensus 2 GV~G~Lw~~Lkp~~----~~~~Ls~L~gk~IAIDas~wL~r~~~a~~~--------~g~~~~~Lr~~f~r~l~lL~~~gI 69 (602)
||+| ||+||++++ +..+|+.++|++|||||++||||++++++. +|.++++++++|.++++++ ++||
T Consensus 1 GI~G-L~~~L~~~~~~~~~~~~l~~l~g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll-~~~i 78 (379)
T 1ul1_X 1 GIQG-LAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMM-ENGI 78 (379)
T ss_dssp CCTT-HHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHH-HTTC
T ss_pred CcCh-hHHHHHHhccccceeeCHHHcCCCEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHH-HCCC
Confidence 9998 999999986 578999999999999999999999998752 5788899999999998877 5899
Q ss_pred eEEEEEcCCCCcchhHHHHHhhhccccccccc-hHHHhccchhhhHHH--------HHhHHHHHHHHHHcCCCEEeccCc
Q 044842 70 FPVFVVDGTPSPLKSQARLARFYRSTIDASTL-PVAEEGILVERNQTF--------LKCVQECVELLELFGMPVLKAKGE 140 (602)
Q Consensus 70 ~PVfVFDG~~p~~K~~t~~kR~~R~~~~~~~~-~~~k~g~~~e~~~~f--------~~~i~~~~~lL~~~GI~~i~AP~E 140 (602)
+|+|||||.++++|+.+..+|..++......+ ....+|...+. ..| ..++..++++|+.|||||++||||
T Consensus 79 ~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~-~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgE 157 (379)
T 1ul1_X 79 KPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEV-EKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSE 157 (379)
T ss_dssp CEEEEECCSCCSCCCCCCCCC------------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSC
T ss_pred CeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHH-HHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCCc
Confidence 99999999999999877665554331111111 11112221111 112 357889999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCCeEeeCCeEEEEecCCC--CCCCeEEEeHHHHHHHhCCCHHHHHHHHHHcCCCCCCCC
Q 044842 141 AEALCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPN--TKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLNG 218 (602)
Q Consensus 141 ADAqcA~L~~~g~vd~ViT~DSD~llfG~~~Vi~~~~~~--~k~~~~~y~~~~i~~~lgL~~~qli~laiL~G~DY~~~G 218 (602)
||||||+|++.|.+++|+|+|+|+|+||++.|+++++.. .+.++++|+.+.|.+.+||+++||+++|+|+||||+ +|
T Consensus 158 ADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~-d~ 236 (379)
T 1ul1_X 158 AEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYC-ES 236 (379)
T ss_dssp HHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSS-CC
T ss_pred HHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcC-CC
Confidence 999999999999999999999999999999999988642 234688999999999999999999999999999997 99
Q ss_pred CCcccHHHHHHHHHhcCh-HHHHHHHHhhCCCCCCCCcCCccchhhhhcCCCCCCccccCCCCccCCCCCCccccccccc
Q 044842 219 VQGIGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSC 297 (602)
Q Consensus 219 ipGIG~ktA~~Li~~~~~-e~iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~Cs~C~h~gs~k~h~k~gc 297 (602)
|||||+|||++||++|++ ++|++++++.
T Consensus 237 IpGIG~KtA~kLl~~~gsle~i~~~~~~~--------------------------------------------------- 265 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQKHKSIEEIVRRLDPN--------------------------------------------------- 265 (379)
T ss_dssp CTTCCHHHHHHHHHHSSSHHHHHTTCCCT---------------------------------------------------
T ss_pred CCCcCHHHHHHHHHHcCCHHHHHHHHHhh---------------------------------------------------
Confidence 999999999999999996 6666432100
Q ss_pred cccccCCCCCCCCCCCCCccccccchhhhhHHHHhhhhhhhHhhhcccccCCCCCCHHHHHHHhccCCCCCCCCCCCCcc
Q 044842 298 EYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSIS 377 (602)
Q Consensus 298 ~~C~~~~~~gc~~~~~~~~c~c~~~~~~r~~k~~~~~~~~~~~~~~k~~~~~~FP~~~Vi~~yl~p~v~~~~~~~~~~~~ 377 (602)
+..++++||+.++.+.|++|.|. . .....|.
T Consensus 266 ----------------------------------------------k~~~~~~~~~~~ar~l~l~~~v~--~-~~~~~l~ 296 (379)
T 1ul1_X 266 ----------------------------------------------KYPVPENWLHKEAHQLFLEPEVL--D-PESVELK 296 (379)
T ss_dssp ----------------------------------------------TSCCCSSCCHHHHHHHHHSCCCC--C-GGGCCCC
T ss_pred ----------------------------------------------cccCCCcCCHHHHHHHhcCCeeC--C-CCCccCC
Confidence 01236677778899999999873 1 1123899
Q ss_pred cCCCCHHHHHHHHhhhCCCChhHHhhhHhhHHHhHHHhhhcCCCccccccCcccc
Q 044842 378 WGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIYLREMATNPVQTLLCGQYEF 432 (602)
Q Consensus 378 W~~Pdl~~L~~f~~~~~~W~~~~~~e~llPll~~~~l~~~~~~~~~~~~~~~~~~ 432 (602)
|+.||.+.|++|+.++++|++++++..+-+|.+.. ...+|..+...+.+
T Consensus 297 ~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~~~------~~~~q~~l~~ff~~ 345 (379)
T 1ul1_X 297 WSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSR------QGSTQGRLDDFFKV 345 (379)
T ss_dssp CCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHH------SCCSBCCHHHHSEE
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------ccCCCCcHHhhcCC
Confidence 99999999999999999999999999988887642 23344455555543
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=8e-53 Score=442.03 Aligned_cols=293 Identities=26% Similarity=0.394 Sum_probs=241.7
Q ss_pred CCCCCcChhhhcccccccCccccCCCEEEEeHHHHHHHHhcccc------C---CCCCChHHHHHHHHHHHHHHhCCCeE
Q 044842 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK------K---NSVPKPHLRLTFFRTINLFAKFGAFP 71 (602)
Q Consensus 1 MGV~G~Lw~~Lkp~~~~~~Ls~L~gk~IAIDas~wL~r~~~a~~------~---~g~~~~~Lr~~f~r~l~lL~~~gI~P 71 (602)
||| | ||+|| +.++.+|+.++|++|+|||++||||++++++ . .|.++++++++|.++++++ .++|+|
T Consensus 1 MGI-g-L~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll-~~~i~P 75 (326)
T 1a76_A 1 MGV-Q-FGDFI--PKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLL-ENDITP 75 (326)
T ss_dssp -CC-C-CGGGS--CCEECCSGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHH-HTTCEE
T ss_pred CCC-C-hHHHH--hhcccCHHHhCCCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHH-HCCCeE
Confidence 999 9 99999 7888999999999999999999999999875 1 5788999999999988875 589999
Q ss_pred EEEEcCCCCcchhHHHHHhhhccc-cccccchHHHhccchhhhHH-------HHHhHHHHHHHHHHcCCCEEeccCcHHH
Q 044842 72 VFVVDGTPSPLKSQARLARFYRST-IDASTLPVAEEGILVERNQT-------FLKCVQECVELLELFGMPVLKAKGEAEA 143 (602)
Q Consensus 72 VfVFDG~~p~~K~~t~~kR~~R~~-~~~~~~~~~k~g~~~e~~~~-------f~~~i~~~~~lL~~~GI~~i~AP~EADA 143 (602)
||||||.+++.|+++..+|..++. .........+.|...++... ...++..++++|+.|||||++|||||||
T Consensus 76 v~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~ 155 (326)
T 1a76_A 76 IWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEA 155 (326)
T ss_dssp EEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHH
T ss_pred EEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccHHH
Confidence 999999999999887766654432 11111111112211111111 1347889999999999999999999999
Q ss_pred HHHHHHHcCCeeEEEcCCCCeEeeCCeEEEEecCCCCCCCeEEEeHHHHHHHhCCCHHHHHHHHHHcCCCCCCC-CCCcc
Q 044842 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN-GVQGI 222 (602)
Q Consensus 144 qcA~L~~~g~vd~ViT~DSD~llfG~~~Vi~~~~~~~k~~~~~y~~~~i~~~lgL~~~qli~laiL~G~DY~~~-GipGI 222 (602)
|||+|++.|++++|+|+|+|+|+||+++|+++++..+ ..+++|+.+.+.+.+|++++||+++|+|+||||+ | |||||
T Consensus 156 ~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~-~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~-p~GvpGi 233 (326)
T 1a76_A 156 QASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK-EMPELIELNEVLEDLRISLDDLIDIAIFMGTDYN-PGGVKGI 233 (326)
T ss_dssp HHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCS-SCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTS-TTTTTTC
T ss_pred HHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCC-CceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCC-CCCCCCc
Confidence 9999999999999999999999999999999987654 3678999999999999999999999999999996 8 99999
Q ss_pred cHHHHHHHHHhcCh-HHHH-HHHHhhCCCCCCCCcCCccchhhhhcCCCCCCccccCCCCccCCCCCCcccccccccccc
Q 044842 223 GLDTALQFVQNFSE-DEIL-NILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCEYC 300 (602)
Q Consensus 223 G~ktA~~Li~~~~~-e~iL-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~Cs~C~h~gs~k~h~k~gc~~C 300 (602)
|+|||++||++ |+ ++|+ ++++
T Consensus 234 G~ktA~kli~~-gsle~i~~~~~~-------------------------------------------------------- 256 (326)
T 1a76_A 234 GFKRAYELVRS-GVAKDVLKKEVE-------------------------------------------------------- 256 (326)
T ss_dssp CHHHHHHHHHH-TCHHHHHHHHST--------------------------------------------------------
T ss_pred CHHHHHHHHHc-CCHHHHHHHHHh--------------------------------------------------------
Confidence 99999999999 85 6666 4411
Q ss_pred ccCCCCCCCCCCCCCccccccchhhhhHHHHhhhhhhhHhhhcccccCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCC
Q 044842 301 INDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISWGS 380 (602)
Q Consensus 301 ~~~~~~gc~~~~~~~~c~c~~~~~~r~~k~~~~~~~~~~~~~~k~~~~~~FP~~~Vi~~yl~p~v~~~~~~~~~~~~W~~ 380 (602)
.| ..+.++|++|.+. + ...+.|+.
T Consensus 257 -------------------------------------------------~~--~~~~~~~l~~~l~--~---~~~~~~~~ 280 (326)
T 1a76_A 257 -------------------------------------------------YY--DEIKRIFKEPKVT--D---NYSLSLKL 280 (326)
T ss_dssp -------------------------------------------------TH--HHHHHHHHSCCCC--C---CCCCCCCC
T ss_pred -------------------------------------------------HH--HHHHHHHhCCCCC--C---CccCCCCC
Confidence 00 1333899999973 1 45899999
Q ss_pred CCHHHHHHHHhhhCCCChhHHhhhHhhHHHhHH
Q 044842 381 PMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413 (602)
Q Consensus 381 Pdl~~L~~f~~~~~~W~~~~~~e~llPll~~~~ 413 (602)
||.+.|++|+.++++|+.+++++.+.||.+.++
T Consensus 281 ~d~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~ 313 (326)
T 1a76_A 281 PDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIA 313 (326)
T ss_dssp CCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999987654
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=1.8e-51 Score=433.47 Aligned_cols=295 Identities=24% Similarity=0.386 Sum_probs=239.6
Q ss_pred CCCCCcChhhhcccccccCccccCCCEEEEeHHHHHHHHhcccc---------CCCCCChHHHHHHHHHHHHHHhCCCeE
Q 044842 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIK---------KNSVPKPHLRLTFFRTINLFAKFGAFP 71 (602)
Q Consensus 1 MGV~G~Lw~~Lkp~~~~~~Ls~L~gk~IAIDas~wL~r~~~a~~---------~~g~~~~~Lr~~f~r~l~lL~~~gI~P 71 (602)
||| | ||+|| ..++.+|++++|++|+|||++||||++++++ ..|.++++++++|.++++++ +++|+|
T Consensus 1 MGI-~-L~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll-~~~i~P 75 (336)
T 1rxw_A 1 MGA-D-IGDLF--EREEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMV-EVGIRP 75 (336)
T ss_dssp --C-T-GGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHH-HHTCEE
T ss_pred CCC-C-hHHHH--hcceeCHHHhCCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHH-HCCCEE
Confidence 999 9 99999 6788999999999999999999999999875 16788999999888888766 589999
Q ss_pred EEEEcCCCCcchhHHHHHhhhcccccc-ccchHHHhccchhhhHHHH-------HhHHHHHHHHHHcCCCEEeccCcHHH
Q 044842 72 VFVVDGTPSPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQTFL-------KCVQECVELLELFGMPVLKAKGEAEA 143 (602)
Q Consensus 72 VfVFDG~~p~~K~~t~~kR~~R~~~~~-~~~~~~k~g~~~e~~~~f~-------~~i~~~~~lL~~~GI~~i~AP~EADA 143 (602)
||||||.+++.|+++..+|..++.... ......+.|. .+....+. .++..++++|+.|||||++|||||||
T Consensus 76 v~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA 154 (336)
T 1rxw_A 76 VFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEA 154 (336)
T ss_dssp EEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHH
T ss_pred EEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCchHHH
Confidence 999999999999988777765442111 1111112232 11112122 27889999999999999999999999
Q ss_pred HHHHHHHcCCeeEEEcCCCCeEeeCCeEEEEecCCCCCC-----------CeEEEeHHHHHHHhCCCHHHHHHHHHHcCC
Q 044842 144 LCAQLNSEGYVDACITADSDAFLFGAKCVVKCIRPNTKE-----------PFECYCISDIEAGLGLKRKHLIAMSLLIGN 212 (602)
Q Consensus 144 qcA~L~~~g~vd~ViT~DSD~llfG~~~Vi~~~~~~~k~-----------~~~~y~~~~i~~~lgL~~~qli~laiL~G~ 212 (602)
|||+|++.|++++|+|+|+|+|+||+++|++++...++. .+++|+.+.+.+.+|++++||+++|+|+||
T Consensus 155 ~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~Gs 234 (336)
T 1rxw_A 155 QAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGT 234 (336)
T ss_dssp HHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCB
T ss_pred HHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcCC
Confidence 999999999999999999999999999999988654211 357899999999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHHhcCh-HHHHHHHHhhCCCCCCCCcCCccchhhhhcCCCCCCccccCCCCccCCCCCCccc
Q 044842 213 DHDLNGVQGIGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRA 291 (602)
Q Consensus 213 DY~~~GipGIG~ktA~~Li~~~~~-e~iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~Cs~C~h~gs~k~ 291 (602)
||+ |||||||+|||++||++||+ ++|++++.+ . +
T Consensus 235 D~i-pGv~GiG~KtA~kLl~~~gsle~i~~~~~~-----------------~----l----------------------- 269 (336)
T 1rxw_A 235 DYN-EGVKGVGVKKALNYIKTYGDIFRALKALKV-----------------N----I----------------------- 269 (336)
T ss_dssp TTB-CCCTTCCHHHHHHHHHHHSSHHHHHHHHTC----------------------------------------------
T ss_pred CCC-CCCCCcCHHHHHHHHHHcCCHHHHHHhCCC-----------------C----C-----------------------
Confidence 996 99999999999999999996 778766320 0 0
Q ss_pred cccccccccccCCCCCCCCCCCCCccccccchhhhhHHHHhhhhhhhHhhhcccccCCCCCCHHHHHHHhccCCCCCCCC
Q 044842 292 HFKFSCEYCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTAT 371 (602)
Q Consensus 292 h~k~gc~~C~~~~~~gc~~~~~~~~c~c~~~~~~r~~k~~~~~~~~~~~~~~k~~~~~~FP~~~Vi~~yl~p~v~~~~~~ 371 (602)
+ + .++++..|++|.+.
T Consensus 270 --------------------------------------------------------~-~--~~~l~~i~~~~~v~----- 285 (336)
T 1rxw_A 270 --------------------------------------------------------D-H--VEEIRNFFLNPPVT----- 285 (336)
T ss_dssp -------------------------------------------------------------CHHHHHHHHSCCCC-----
T ss_pred --------------------------------------------------------c-c--HHHHHHHHhCCCCC-----
Confidence 0 0 12788899999872
Q ss_pred CCCCcccCCCCHHHHHHHHhhhCCCChhHHhhhHhhHHH
Q 044842 372 DGPSISWGSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLS 410 (602)
Q Consensus 372 ~~~~~~W~~Pdl~~L~~f~~~~~~W~~~~~~e~llPll~ 410 (602)
+...+.|+.||.+.|++|++++++|++.+++..|-+|.+
T Consensus 286 ~~~~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~ 324 (336)
T 1rxw_A 286 DDYRIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKA 324 (336)
T ss_dssp CCCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC
T ss_pred CcccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHh
Confidence 356899999999999999999999999999988888765
No 7
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.4e-51 Score=431.51 Aligned_cols=300 Identities=28% Similarity=0.400 Sum_probs=219.8
Q ss_pred hhhcccccccCccccCCCEEEEeHHHHHHHHhccccC---------CCCCChHHHHHHHHHHHHHHhCCCeEEEEEcCCC
Q 044842 9 DLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---------NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTP 79 (602)
Q Consensus 9 ~~Lkp~~~~~~Ls~L~gk~IAIDas~wL~r~~~a~~~---------~g~~~~~Lr~~f~r~l~lL~~~gI~PVfVFDG~~ 79 (602)
+++.++.++.+|+.|+|++|||||++||||++++++. .|.++++++++|.++++++ ++||+|||||||.+
T Consensus 2 ~~~~~~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll-~~~i~Pv~vFDG~~ 80 (346)
T 2izo_A 2 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINIL-EEGVIPIYVFDGKP 80 (346)
T ss_dssp CCCCCCCEECCHHHHTTEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHH-HHTEEEEEEECC--
T ss_pred CcCCCCcccCCHHHhCCCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHH-HCCCcEEEEECCCC
Confidence 4678888999999999999999999999999998751 5888999999999988876 57999999999999
Q ss_pred CcchhHHHHHhhhcccccc-ccchHHHhccchhhhHHH-------HHhHHHHHHHHHHcCCCEEeccCcHHHHHHHHHHc
Q 044842 80 SPLKSQARLARFYRSTIDA-STLPVAEEGILVERNQTF-------LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSE 151 (602)
Q Consensus 80 p~~K~~t~~kR~~R~~~~~-~~~~~~k~g~~~e~~~~f-------~~~i~~~~~lL~~~GI~~i~AP~EADAqcA~L~~~ 151 (602)
+++|+++..+|..++.... .+......|...++...+ ..++..++++|+.|||||++||||||||||+|++.
T Consensus 81 ~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~ 160 (346)
T 2izo_A 81 PEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKL 160 (346)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhC
Confidence 9999988777765442211 111122233222222211 26888999999999999999999999999999999
Q ss_pred CCeeEEEcCCCCeEeeCCeEEEEecCCCCCC-----------CeEEEeHHHHHHHhCCCHHHHHHHHHHcCCCCCCC-CC
Q 044842 152 GYVDACITADSDAFLFGAKCVVKCIRPNTKE-----------PFECYCISDIEAGLGLKRKHLIAMSLLIGNDHDLN-GV 219 (602)
Q Consensus 152 g~vd~ViT~DSD~llfG~~~Vi~~~~~~~k~-----------~~~~y~~~~i~~~lgL~~~qli~laiL~G~DY~~~-Gi 219 (602)
|++++|+|+|+|+|+||++.|+++++..++. .+++|+.+.+.+.+|++++||+++|+|+||||+ | ||
T Consensus 161 g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~-p~Gv 239 (346)
T 2izo_A 161 GLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYN-PDGI 239 (346)
T ss_dssp TSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSS-TTCS
T ss_pred CCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCC-CCCC
Confidence 9999999999999999999999988643221 357899999999999999999999999999996 8 99
Q ss_pred CcccHHHHHHHHHhcCh-HHHHHHHHhhCCCCCCCCcCCccchhhhhcCCCCCCccccCCCCccCCCCCCcccccccccc
Q 044842 220 QGIGLDTALQFVQNFSE-DEILNILHKIGNGDIPQYWGDIKSTEEAVSHSDESMPMIKSSHCSFCGHPGTKRAHFKFSCE 298 (602)
Q Consensus 220 pGIG~ktA~~Li~~~~~-e~iL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~Cs~C~h~gs~k~h~k~gc~ 298 (602)
||||+|||++||++||+ ++|+++++..
T Consensus 240 ~GIG~KtA~kLi~~~gsle~i~~~~~~~---------------------------------------------------- 267 (346)
T 2izo_A 240 RGIGPERALKIIKKYGKIEKAMEYGEIS---------------------------------------------------- 267 (346)
T ss_dssp TTCCHHHHHHHHHHSSCC--------------------------------------------------------------
T ss_pred CCcCHHHHHHHHHHcCCHHHHHHHHHhc----------------------------------------------------
Confidence 99999999999999995 6666543211
Q ss_pred ccccCCCCCCCCCCCCCccccccchhhhhHHHHhhhhhhhHhhhcccccCCCCCCHHHHHHHhccCCCCCCCCCCCCccc
Q 044842 299 YCINDNNEGCLKKPDGFKCNCSLCNKNRKEKEQKKHENWWIKVCSKIALETNFPNDEIVTMYLCENNGTFTATDGPSISW 378 (602)
Q Consensus 299 ~C~~~~~~gc~~~~~~~~c~c~~~~~~r~~k~~~~~~~~~~~~~~k~~~~~~FP~~~Vi~~yl~p~v~~~~~~~~~~~~W 378 (602)
.++++|++.+++..|++|.+. .+...+.|
T Consensus 268 -----------------------------------------------k~~~~~~~~~l~~i~~~~~v~----~~~~~l~~ 296 (346)
T 2izo_A 268 -----------------------------------------------KKDINFNIDEIRGLFLNPQVV----KPEEALDL 296 (346)
T ss_dssp ------------------------------------------------------CTTHHHHHHSCCCC----CCC-CCCC
T ss_pred -----------------------------------------------cCCCCccHHHHHHHhhCCCCC----CccccCcc
Confidence 023444567999999999972 23568999
Q ss_pred CCCCHHHHHHHHhhhCCCChhHHhhhHhhHHHhHH
Q 044842 379 GSPMTEMLVDFLVYHQPWQPSYIRQKMLPMLSTIY 413 (602)
Q Consensus 379 ~~Pdl~~L~~f~~~~~~W~~~~~~e~llPll~~~~ 413 (602)
+.||.+.|++|++++++|++++++..+.+|++.+.
T Consensus 297 ~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~ 331 (346)
T 2izo_A 297 NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIK 331 (346)
T ss_dssp CCCCHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998754
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=1.6e-51 Score=436.26 Aligned_cols=242 Identities=23% Similarity=0.284 Sum_probs=206.6
Q ss_pred CCCCCcChhhhcccccccCccccCCCEEEEeHHHHHHHHhccccC---CCCCChHHHHHHHHHHHHHHhCCCeEEEEEcC
Q 044842 1 MGVGGKFWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKK---NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDG 77 (602)
Q Consensus 1 MGV~G~Lw~~Lkp~~~~~~Ls~L~gk~IAIDas~wL~r~~~a~~~---~g~~~~~Lr~~f~r~l~lL~~~gI~PVfVFDG 77 (602)
|||+| ||+||++++++.+|+.|+|++||||||+||||+++++.. .|.+++++.++|+|++++|+.+||+|||||||
T Consensus 1 MGI~G-L~~~L~~~~~~~~l~~l~Gk~vaIDas~wL~~~~~~~~~~l~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG 79 (352)
T 3qe9_Y 1 MGIQG-LLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDG 79 (352)
T ss_dssp -CCTT-HHHHTTTSEEEEEGGGGTTSEEEEETHHHHHHHHHHTHHHHHTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCcch-HHHHHHhhCCcCCHHHhCCcEEEEecHHHHHHhhhccchhhcCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 99999 999999999999999999999999999999998776532 78888999999999999988899999999999
Q ss_pred CCCcchhHHHHHhhhcc-ccccccchHHHhccchhhhHHH-------HHhHHHHHHHHHHcCCCEEeccCcHHHHHHHHH
Q 044842 78 TPSPLKSQARLARFYRS-TIDASTLPVAEEGILVERNQTF-------LKCVQECVELLELFGMPVLKAKGEAEALCAQLN 149 (602)
Q Consensus 78 ~~p~~K~~t~~kR~~R~-~~~~~~~~~~k~g~~~e~~~~f-------~~~i~~~~~lL~~~GI~~i~AP~EADAqcA~L~ 149 (602)
.+++.|+.+..+|+.++ .........+++|+..++.+.| ..++..++++|+.|||||++||||||||||+|+
T Consensus 80 ~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La 159 (352)
T 3qe9_Y 80 CTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLN 159 (352)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHHHH
Confidence 99999999888887655 2222222334556544555555 357889999999999999999999999999999
Q ss_pred HcCCeeEEEcCCCCeEeeCCeEEEEecCCCCCCCeEEEeHHHH--HHHhC--CCHHHHHHHHHHcCCCCCCCCCCcccHH
Q 044842 150 SEGYVDACITADSDAFLFGAKCVVKCIRPNTKEPFECYCISDI--EAGLG--LKRKHLIAMSLLIGNDHDLNGVQGIGLD 225 (602)
Q Consensus 150 ~~g~vd~ViT~DSD~llfG~~~Vi~~~~~~~k~~~~~y~~~~i--~~~lg--L~~~qli~laiL~G~DY~~~GipGIG~k 225 (602)
+.|++++|+|+|+|+|+||+++|+++++..++ ...|+...+ .+.+| ++++||+++|+|+||||+ +||||||+|
T Consensus 160 ~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~~-pgv~GiG~k 236 (352)
T 3qe9_Y 160 KAGIVQAIITEDSALLAFGCKKVILKMDQFGN--GLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYL-SSLRGIGLA 236 (352)
T ss_dssp HTTSCSEEECSCGGGGGGTCSEEEESCCTTSE--EEEEEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSSS-CCCTTCCHH
T ss_pred HCCCeEEEEeCCcCcccccCCeEEEeccCCCC--cEEEeHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCC-CCCCCeeHH
Confidence 99999999999999999999999988865432 234777665 57788 999999999999999996 999999999
Q ss_pred HHHHHHHhcC---hHHHHHHHHhh
Q 044842 226 TALQFVQNFS---EDEILNILHKI 246 (602)
Q Consensus 226 tA~~Li~~~~---~e~iL~~l~~~ 246 (602)
||++||++|+ .+++|+++.++
T Consensus 237 tA~kli~~~~~~~l~~il~~~~~~ 260 (352)
T 3qe9_Y 237 KACKVLRLANNPDIVKVIKKIGHY 260 (352)
T ss_dssp HHHHHHHHCCCSCHHHHHTTHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhh
Confidence 9999999994 48999988876
No 9
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=5.2e-36 Score=347.43 Aligned_cols=206 Identities=21% Similarity=0.239 Sum_probs=173.7
Q ss_pred ccCccccCCCEEEEeHHHHHHHHhccccC----CCCCChHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcchhHHHHHhhh
Q 044842 17 FEGLDFLRDKRVAVDLSYWIVQHETAIKK----NSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFY 92 (602)
Q Consensus 17 ~~~Ls~L~gk~IAIDas~wL~r~~~a~~~----~g~~~~~Lr~~f~r~l~lL~~~gI~PVfVFDG~~p~~K~~t~~kR~~ 92 (602)
..+|++++|++|+|||++|+||++++++. .|.+++++.+++.+++++|...+++|+|||||.++++|++....+
T Consensus 4 ~~~l~~~~~~~llIDg~~~l~ra~~a~~~l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~Y-- 81 (832)
T 1bgx_T 4 MLPLFEPKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGY-- 81 (832)
T ss_dssp SSCCCCCCTTSCCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTT--
T ss_pred ccCHHHhCCCEEEEEChHHHHHHHhcCCccccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHH--
Confidence 56899999999999999999999998753 688899999988888888876679999999998888776543222
Q ss_pred ccccccccchHHHhccchhhhHHHHHhHHHHHHHHHHcCCCEEeccC-cHHHHHHHHHH----cCCeeEEEcCCCCeEee
Q 044842 93 RSTIDASTLPVAEEGILVERNQTFLKCVQECVELLELFGMPVLKAKG-EAEALCAQLNS----EGYVDACITADSDAFLF 167 (602)
Q Consensus 93 R~~~~~~~~~~~k~g~~~e~~~~f~~~i~~~~~lL~~~GI~~i~AP~-EADAqcA~L~~----~g~vd~ViT~DSD~llf 167 (602)
++++ .+.++.+..++..++++|+.||||++++|| |||++||+|++ .|..++|+|+|+|+++|
T Consensus 82 ------------Ka~R-~~~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql 148 (832)
T 1bgx_T 82 ------------KAGR-APTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQL 148 (832)
T ss_dssp ------------TSCC-CCCCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTT
T ss_pred ------------Hhcc-ccChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhc
Confidence 1221 123344556778899999999999999996 99999999987 68889999999999999
Q ss_pred CCeEEEEecCCCCCCCeEEEeHHHHHHHhCCCHHHHHHHHHHcC--CCCCCCCCCcccHHHHHHHHHhcCh-HHHHHHH
Q 044842 168 GAKCVVKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIG--NDHDLNGVQGIGLDTALQFVQNFSE-DEILNIL 243 (602)
Q Consensus 168 G~~~Vi~~~~~~~k~~~~~y~~~~i~~~lgL~~~qli~laiL~G--~DY~~~GipGIG~ktA~~Li~~~~~-e~iL~~l 243 (602)
++++|+..+. .+ +.|+.+.+.+.+|++++||+++|+|+| |||. |||||||+|||++||++||+ ++|++++
T Consensus 149 ~~~~v~~~~~-~g----~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDni-pGVpGIG~KtA~kLl~~~gsle~i~~~~ 221 (832)
T 1bgx_T 149 LSDRIHVLHP-EG----YLITPAWLWEKYGLRPDQWADYRALTGDESDNL-PGVKGIGEKTARKLLEEWGSLEALLKNL 221 (832)
T ss_dssp CCTTBCBCCS-SS----CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCC-CCCCCSSSCTTTTTGGGTTSSCSSSSSC
T ss_pred CcCCEEEEeC-CC----cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccC-CCCCCcCchHHHHHHHHCCCHHHHHHHH
Confidence 9998876655 22 578999999999999999999999999 9995 99999999999999999996 6666543
No 10
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.98 E-value=1.4e-32 Score=283.40 Aligned_cols=212 Identities=15% Similarity=0.182 Sum_probs=161.0
Q ss_pred ChhhhcccccccCccccCCCEEEEeHHHHHHHHhccccCCCCCChHHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcchhH
Q 044842 7 FWDLLKPYARFEGLDFLRDKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFG-AFPVFVVDGTPSPLKSQ 85 (602)
Q Consensus 7 Lw~~Lkp~~~~~~Ls~L~gk~IAIDas~wL~r~~~a~~~~g~~~~~Lr~~f~r~l~lL~~~g-I~PVfVFDG~~p~~K~~ 85 (602)
|-.|+.+ +..++.. .++.++|||++|+||++++ .+|.+ ++.+++.++++++...+ .++++||||.++.++++
T Consensus 4 ~~~~~~~--~~~~~~~-~~~lllIDg~~llyRa~~~--~~G~p--av~Gf~~~l~~ll~~~~p~~~vvvFD~~~~tfR~~ 76 (290)
T 1exn_A 4 WGKFIEE--EEAEMAS-RRNLMIVDGTNLGFRFKHN--NSKKP--FASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLE 76 (290)
T ss_dssp ------------------CEEEEEEHHHHHHHHHHH--CSSSC--CHHHHHHHHHHHHHHTTEEEEEEECCBSCCHHHHH
T ss_pred hHHHhhh--ccccccc-CCCEEEEECcHHHHHHHhC--CCCch--HHHHHHHHHHHHHHHcCCCeEEEEEcCCCchhhhh
Confidence 6666633 3345656 7889999999999999873 25665 89998888888886644 35699999987766543
Q ss_pred HHHHhhhccccccccchHHHhccchhhh-------HHHHHh-HHHHHHHHHH--cCCCEEeccC-cHHHHHHHHHHc---
Q 044842 86 ARLARFYRSTIDASTLPVAEEGILVERN-------QTFLKC-VQECVELLEL--FGMPVLKAKG-EAEALCAQLNSE--- 151 (602)
Q Consensus 86 t~~kR~~R~~~~~~~~~~~k~g~~~e~~-------~~f~~~-i~~~~~lL~~--~GI~~i~AP~-EADAqcA~L~~~--- 151 (602)
.... | +++ +.+.+ +.+..+ +..++++|+. ||||++.+|+ |||++||+|++.
T Consensus 77 ~~~~-Y-------------Ka~-R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~ 141 (290)
T 1exn_A 77 HLPE-Y-------------KGN-RDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGH 141 (290)
T ss_dssp HCTT-T-------------THH-HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGG
T ss_pred CcHH-H-------------HcC-CCCCCccccccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHH
Confidence 3211 1 111 11223 667777 8999999999 9999999997 999999999875
Q ss_pred -CCeeEEEcCCCCeEeeCCeEE-EEecCCCCCCCeEEEeHHHHHHHhCCCH-HHHHHHHHHcC--CCCCCCCCCcccHHH
Q 044842 152 -GYVDACITADSDAFLFGAKCV-VKCIRPNTKEPFECYCISDIEAGLGLKR-KHLIAMSLLIG--NDHDLNGVQGIGLDT 226 (602)
Q Consensus 152 -g~vd~ViT~DSD~llfG~~~V-i~~~~~~~k~~~~~y~~~~i~~~lgL~~-~qli~laiL~G--~DY~~~GipGIG~kt 226 (602)
|....|+|.|+|+++|++++| +++.. ..+.|+.+.+.+.+|+++ +||+++++|+| |||. |||||||+||
T Consensus 142 ~G~~v~IvS~DkDl~Qlv~~~v~v~~~~-----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDni-PGVpGIG~KT 215 (290)
T 1exn_A 142 LYDHVWLISTDGDWDTLLTDKVSRFSFT-----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNI-RGVEGIGAKR 215 (290)
T ss_dssp GSSCEEEECSCGGGGGGCCSSEEEEETT-----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTB-CCCTTCCHHH
T ss_pred CCCcEEEEeCCCChhhcCCCCEEEEECC-----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCC-CCCCcCCHhH
Confidence 777789999999999999876 33321 357899999999999999 99999999999 9995 9999999999
Q ss_pred HHHHHHhcCh-HHHHHHHHhh
Q 044842 227 ALQFVQNFSE-DEILNILHKI 246 (602)
Q Consensus 227 A~~Li~~~~~-e~iL~~l~~~ 246 (602)
|++||++||+ |+|+++++++
T Consensus 216 A~kLL~~~gsle~i~~~~~~~ 236 (290)
T 1exn_A 216 GYNIIREFGNVLDIIDQLPLP 236 (290)
T ss_dssp HHHHHHHHCSHHHHHHHCSCS
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 9999999996 9999987655
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.73 E-value=8.1e-18 Score=173.14 Aligned_cols=175 Identities=14% Similarity=0.022 Sum_probs=125.0
Q ss_pred CCCEEEEeHHHHHHHHhcc-ccC-CCCCChHHHHHHHHH-HHHHHh----CCCeEEEEEcCC-CCcchhHHHHHhhhccc
Q 044842 24 RDKRVAVDLSYWIVQHETA-IKK-NSVPKPHLRLTFFRT-INLFAK----FGAFPVFVVDGT-PSPLKSQARLARFYRST 95 (602)
Q Consensus 24 ~gk~IAIDas~wL~r~~~a-~~~-~g~~~~~Lr~~f~r~-l~lL~~----~gI~PVfVFDG~-~p~~K~~t~~kR~~R~~ 95 (602)
+.+.+.||||+.+||++.+ +.. +|.+++++++.|.++ .+++++ .+-+.+++||+. .+.+++ +.
T Consensus 12 ~~~llLIDgssl~~ra~~~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~-el-------- 82 (305)
T 3h7i_A 12 KEGICLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRR-DF-------- 82 (305)
T ss_dssp SCCEEEEEHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHH-HH--------
T ss_pred CCCEEEEeccHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHh-hh--------
Confidence 4478999999999997543 222 688899998855554 444554 456779999986 455533 22
Q ss_pred cccccchHHHhccchhhhHHHH-------HhH-HHHHHHHHHcCCCEEeccC-cHHHHHHHHHH----cCCeeEEEcCCC
Q 044842 96 IDASTLPVAEEGILVERNQTFL-------KCV-QECVELLELFGMPVLKAKG-EAEALCAQLNS----EGYVDACITADS 162 (602)
Q Consensus 96 ~~~~~~~~~k~g~~~e~~~~f~-------~~i-~~~~~lL~~~GI~~i~AP~-EADAqcA~L~~----~g~vd~ViT~DS 162 (602)
++.+|+++. +.++.+. .++ ..++++|+.||||++..|| |||+.||.|++ .|.--.|+|.|.
T Consensus 83 -----yp~YKanR~-~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDK 156 (305)
T 3h7i_A 83 -----AYYYKKNRG-KAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDG 156 (305)
T ss_dssp -----STTTTHHHH-HHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred -----CHHhccCCC-CCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 223333322 2334433 334 6799999999999999997 99999999975 465558999999
Q ss_pred CeEeeCC-eEE-EEecCCCCCCCeEEEeHHHHHHHhCCCHHHHHHHHHHcC--CCCCCCCCCcccHH
Q 044842 163 DAFLFGA-KCV-VKCIRPNTKEPFECYCISDIEAGLGLKRKHLIAMSLLIG--NDHDLNGVQGIGLD 225 (602)
Q Consensus 163 D~llfG~-~~V-i~~~~~~~k~~~~~y~~~~i~~~lgL~~~qli~laiL~G--~DY~~~GipGIG~k 225 (602)
|++++.. +.| +++.. . .+.+.+.+|+ ++|++++.+|+| +|+ +|||||||+.
T Consensus 157 Dl~QLv~~~~V~~~~~~-~---------~~~V~ek~Gv-P~q~iD~~aL~GDsSDN-IPGVpGIG~~ 211 (305)
T 3h7i_A 157 DFTQLHKYPNVKQWSPM-H---------KKWVKIKSGS-AEIDCMTKILKGDKKDN-VASVKVRSDF 211 (305)
T ss_dssp CCGGGGGSSSEEEEETT-T---------TEEECSSCSC-HHHHHHHHHHHCBGGGT-BCCTTSCTTH
T ss_pred CccccccCCCeEEEecC-C---------HHHHHHHhCC-HHHHhhHHheeCccccC-CCCCCcCCcc
Confidence 9999876 333 22211 1 1235667998 999999999999 899 6999999986
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=98.39 E-value=2.7e-06 Score=101.43 Aligned_cols=222 Identities=16% Similarity=0.161 Sum_probs=120.4
Q ss_pred CCCCCcChhhhccccccc-----CccccCCCEEEEeHHHHHHHHhccccCCC---CCChHHHHHHHHHHHHHHh--CCCe
Q 044842 1 MGVGGKFWDLLKPYARFE-----GLDFLRDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTFFRTINLFAK--FGAF 70 (602)
Q Consensus 1 MGV~G~Lw~~Lkp~~~~~-----~Ls~L~gk~IAIDas~wL~r~~~a~~~~g---~~~~~Lr~~f~r~l~lL~~--~gI~ 70 (602)
|||+| |+.||...-... ......=--+-||.++.||.+.+...... .....+..-++..+..|-. .+-+
T Consensus 1 MGVp~-ffrwl~~ryP~~~~~~~~~~~~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrk 79 (1140)
T 2y35_A 1 MGVPK-FFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQR 79 (1140)
T ss_dssp CCSCH-HHHHHHHHSGGGEEEEETTTSCCCSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred CChhH-HHHHHHHHCCchhhhccccCCCcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheeccce
Confidence 99998 999998432110 00111224689999999998876432111 1111221112222222211 2333
Q ss_pred -EEEEEcCCCCcchhHHHHHhhhccccccccc--hHHHhccch----------hhhHHHHH-hHHH----HHHHHH----
Q 044842 71 -PVFVVDGTPSPLKSQARLARFYRSTIDASTL--PVAEEGILV----------ERNQTFLK-CVQE----CVELLE---- 128 (602)
Q Consensus 71 -PVfVFDG~~p~~K~~t~~kR~~R~~~~~~~~--~~~k~g~~~----------e~~~~f~~-~i~~----~~~lL~---- 128 (602)
.++.+||.+|-+|.....+|+.|........ .....|... .....|-. +-.. +..-+.
T Consensus 80 ll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~~d~~ 159 (1140)
T 2y35_A 80 LFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPL 159 (1140)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred eEEEEecCCCchhHHHHHHHHHhhhhhhhhhhHHHHhhcCCccccccCCccccCCCcHHHHHHHHHHHHHHHHHhccCcc
Confidence 3666999999999877766766542111000 000111100 00112322 1112 222222
Q ss_pred HcCCCEEec----cCcHHHHHHHHHHc---------CCeeEEEcCCCCeEeeCC----e--EEEEec---CCCCC-----
Q 044842 129 LFGMPVLKA----KGEAEALCAQLNSE---------GYVDACITADSDAFLFGA----K--CVVKCI---RPNTK----- 181 (602)
Q Consensus 129 ~~GI~~i~A----P~EADAqcA~L~~~---------g~vd~ViT~DSD~llfG~----~--~Vi~~~---~~~~k----- 181 (602)
--++.+|.+ |||+|.-+-.+.+. +....|++.|+|++++|- + .++|.- ..+.+
T Consensus 160 w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~ 239 (1140)
T 2y35_A 160 WQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVE 239 (1140)
T ss_dssp GSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGG
T ss_pred ccceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeeccccccccccccccc
Confidence 236778875 79999977765432 345689999999998863 2 355642 11111
Q ss_pred -CCeEEEeHHHHHHHh------------CCC----HHHHHHHHHHcCCCCCCCCCCcccH
Q 044842 182 -EPFECYCISDIEAGL------------GLK----RKHLIAMSLLIGNDHDLNGVQGIGL 224 (602)
Q Consensus 182 -~~~~~y~~~~i~~~l------------gL~----~~qli~laiL~G~DY~~~GipGIG~ 224 (602)
..+..+++.-+.+.| .++ .+.|+.||.|+|+|| +|++|++.+
T Consensus 240 ~~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDF-LP~lp~l~I 298 (1140)
T 2y35_A 240 ETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDF-IPHLPCLHI 298 (1140)
T ss_dssp GCEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTT-SCCCTTCCT
T ss_pred ccceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCcc-CCCCCcccc
Confidence 235677876665532 123 368899999999999 599999874
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=98.21 E-value=2e-06 Score=101.63 Aligned_cols=221 Identities=16% Similarity=0.229 Sum_probs=119.9
Q ss_pred CCCCCcChhhhccccccc--Ccccc---CCCEEEEeHHHHHHHHhccccCCC---CCChHHHHHHHHHHHHHHhCCCeE-
Q 044842 1 MGVGGKFWDLLKPYARFE--GLDFL---RDKRVAVDLSYWIVQHETAIKKNS---VPKPHLRLTFFRTINLFAKFGAFP- 71 (602)
Q Consensus 1 MGV~G~Lw~~Lkp~~~~~--~Ls~L---~gk~IAIDas~wL~r~~~a~~~~g---~~~~~Lr~~f~r~l~lL~~~gI~P- 71 (602)
|||++ |..||...-... .+... .=--+-||.++.||.+.+...... .....+..-++..+..|- .-|+|
T Consensus 1 MGVP~-ffrwl~~ryP~i~~~~~~~~~pe~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~-~~vrPr 78 (1155)
T 3pie_A 1 MGIPK-FFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLF-HTIKPK 78 (1155)
T ss_pred CChHH-HHHHHHHhCcchhhcccCCCCCcCCeEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHH-HhcCcc
Confidence 99998 999998522111 11111 123578999999998755432110 111122112233333221 12333
Q ss_pred ---EEEEcCCCCcchhHHHHHhhhccccccc--cchHHHhccchh-----------hhHHHHHhH-HHHHHHHH------
Q 044842 72 ---VFVVDGTPSPLKSQARLARFYRSTIDAS--TLPVAEEGILVE-----------RNQTFLKCV-QECVELLE------ 128 (602)
Q Consensus 72 ---VfVFDG~~p~~K~~t~~kR~~R~~~~~~--~~~~~k~g~~~e-----------~~~~f~~~i-~~~~~lL~------ 128 (602)
++.+||.+|-.|-.....|+.|...... .......|.... ....|-..+ ..++..+.
T Consensus 79 kllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~d 158 (1155)
T 3pie_A 79 QTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITND 158 (1155)
T ss_pred eEEEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHHHHHHHHHHHHHHHHhhCC
Confidence 5669999999998777777665522110 000111121100 011232211 11222221
Q ss_pred --HcCCCEEec----cCcHHHHHHHHHHc---------CCeeEEEcCCCCeEeeCCe------EEEEe---cCCCC----
Q 044842 129 --LFGMPVLKA----KGEAEALCAQLNSE---------GYVDACITADSDAFLFGAK------CVVKC---IRPNT---- 180 (602)
Q Consensus 129 --~~GI~~i~A----P~EADAqcA~L~~~---------g~vd~ViT~DSD~llfG~~------~Vi~~---~~~~~---- 180 (602)
--++.+|.+ |||+|.=|..+.+. +....|++.|+|++++|-. .++|. |....
T Consensus 159 ~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~ 238 (1155)
T 3pie_A 159 TRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVK 238 (1155)
T ss_pred cCccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCccccccc
Confidence 125667775 89999988766543 2356899999999998742 24553 22111
Q ss_pred ---CCCeEEEeHHHHHHHhC-------------CC----HHHHHHHHHHcCCCCCCCCCCcccH
Q 044842 181 ---KEPFECYCISDIEAGLG-------------LK----RKHLIAMSLLIGNDHDLNGVQGIGL 224 (602)
Q Consensus 181 ---k~~~~~y~~~~i~~~lg-------------L~----~~qli~laiL~G~DY~~~GipGIG~ 224 (602)
..++.++++.-+.+.|. ++ -+.||.+|.|+|||| +|.+|.+.+
T Consensus 239 ~~~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDF-LPhlP~l~I 301 (1155)
T 3pie_A 239 TLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDF-LPNLPDLHL 301 (1155)
T ss_pred ccccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCccc-CCCCCccCc
Confidence 12456777765554331 12 257888999999999 599998864
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=97.90 E-value=3.7e-05 Score=88.72 Aligned_cols=196 Identities=16% Similarity=0.237 Sum_probs=107.5
Q ss_pred EEEEeHHHHHHHHhccccCC-CCCChHHHHHHHHHHHHHHhCCCeE----EEEEcCCCCcchhHHHHHhhhcccccccc-
Q 044842 27 RVAVDLSYWIVQHETAIKKN-SVPKPHLRLTFFRTINLFAKFGAFP----VFVVDGTPSPLKSQARLARFYRSTIDAST- 100 (602)
Q Consensus 27 ~IAIDas~wL~r~~~a~~~~-g~~~~~Lr~~f~r~l~lL~~~gI~P----VfVFDG~~p~~K~~t~~kR~~R~~~~~~~- 100 (602)
-+-||.++.||.+.+.-... ......+..-+|..|..|- .-|+| ++.+||.+|-.|-.....|+.|.......
T Consensus 54 nLYlDmNgIIH~c~h~~~~~~~~te~e~~~~If~yid~l~-~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~ 132 (899)
T 3fqd_A 54 NLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRIL-AMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALK 132 (899)
T ss_dssp EEEEETHHHHHHHHSCSSSCCCCSHHHHHHHHHHHHHHHH-HHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHH-HHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhh
Confidence 56789999999886643111 1111222222333333321 12233 56699999999988777776654211100
Q ss_pred -------chHH-Hhccch---------------hhhHHHHHhH-HHHHHH----HH----HcCCCEEec----cCcHHHH
Q 044842 101 -------LPVA-EEGILV---------------ERNQTFLKCV-QECVEL----LE----LFGMPVLKA----KGEAEAL 144 (602)
Q Consensus 101 -------~~~~-k~g~~~---------------e~~~~f~~~i-~~~~~l----L~----~~GI~~i~A----P~EADAq 144 (602)
.... ..|... .....|-..+ ..++.. |. =-++.+|.+ |||.|.-
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHK 212 (899)
T 3fqd_A 133 EEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHK 212 (899)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHSCCCCCGGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCccccccccCCCcCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCCccHHH
Confidence 0000 112000 0011232222 112211 21 126778875 8999998
Q ss_pred HHHHHHc---------CCeeEEEcCCCCeEeeCCe------EEEEec--CCC-----------C---------------C
Q 044842 145 CAQLNSE---------GYVDACITADSDAFLFGAK------CVVKCI--RPN-----------T---------------K 181 (602)
Q Consensus 145 cA~L~~~---------g~vd~ViT~DSD~llfG~~------~Vi~~~--~~~-----------~---------------k 181 (602)
|..+.+. +....|++.|+|++++|-. .|+|.- +.. + .
T Consensus 213 Im~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~~~~~k~~~~~~~~~~~~~ 292 (899)
T 3fqd_A 213 IMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVK 292 (899)
T ss_dssp HHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTTTTCCBTTC----------
T ss_pred HHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhhcccccccccccccccccc
Confidence 8876542 3556899999999988632 356531 100 0 1
Q ss_pred CCeEEEeHHHHHHHh----CC-------C----HHHHHHHHHHcCCCCCCCCCCcccH
Q 044842 182 EPFECYCISDIEAGL----GL-------K----RKHLIAMSLLIGNDHDLNGVQGIGL 224 (602)
Q Consensus 182 ~~~~~y~~~~i~~~l----gL-------~----~~qli~laiL~G~DY~~~GipGIG~ 224 (602)
.++.++++.-+.+.| .. + -+.||.||.|+|+|| +|.+|.+-+
T Consensus 293 ~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDF-LPhlP~l~I 349 (899)
T 3fqd_A 293 KPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDF-LPHLPSLDI 349 (899)
T ss_dssp CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSS-SCCCTTCCG
T ss_pred CceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCccc-CCCCCccCc
Confidence 246677776665542 22 2 258999999999999 599997653
No 15
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=93.23 E-value=0.16 Score=40.56 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=39.8
Q ss_pred ceeEEEeeecCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhchHHHHHH
Q 044842 432 FDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKVDHF 511 (602)
Q Consensus 432 ~~~i~k~r~~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp~~v~~f 511 (602)
..+|...|.++|..-|.|+|+--. . + +.-|-..|+. . .|++|+.|
T Consensus 3 VE~Il~~r~~~g~~~YlVKWkGy~----~--------------~------------~~TWEp~~nl---~--c~~li~~f 47 (64)
T 3mts_A 3 VEYLCDYKKIREQEYYLVKWRGYP----D--------------S------------ESTWEPRQNL---K--CVRILKQF 47 (64)
T ss_dssp EEEEEEEEECSSCEEEEEEETTSC----G--------------G------------GCEEEEGGGC---C--CHHHHHHH
T ss_pred ceEEEEEEEeCCeEEEEEEEecCC----C--------------c------------CCcEeEHHHC---C--CHHHHHHH
Confidence 357788899999999999996421 0 1 1124444443 2 89999999
Q ss_pred HHhhhhhHHhhhccC
Q 044842 512 LQENERRELKRKRTS 526 (602)
Q Consensus 512 ~~~~~~~~~k~~~~~ 526 (602)
++..+.+..++++++
T Consensus 48 ~~~~~~~l~~~~~~~ 62 (64)
T 3mts_A 48 HKDLERELLRRHHRS 62 (64)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccC
Confidence 998776555555544
No 16
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=88.65 E-value=0.59 Score=38.06 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=24.1
Q ss_pred cCcccceeEEEeeecCceeeEEEEEeec
Q 044842 427 CGQYEFDSIRRVKIRYGHQSYVVKWKKA 454 (602)
Q Consensus 427 ~~~~~~~~i~k~r~~~g~~~~ei~W~~~ 454 (602)
...|+..+|.-.|.++|..-|.|+|+--
T Consensus 11 ~~ey~VE~Il~~r~~~g~~~YlVKWkGy 38 (73)
T 1ap0_A 11 EEEYVVEKVLDRRVVKGKVEYLLKWKGF 38 (73)
T ss_dssp SSCCEEEEEEEEEECSSSEEEEEEEESS
T ss_pred CceEEEEEEEEEEEeCCeEEEEEEECCC
Confidence 3567888999999999999999999863
No 17
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=88.24 E-value=1.1 Score=35.22 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=40.1
Q ss_pred cccceeEEEeeecCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhchHHH
Q 044842 429 QYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKV 508 (602)
Q Consensus 429 ~~~~~~i~k~r~~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp~~v 508 (602)
.|+..+|...|.++|..-|.|+|+--. . ++ -|=||.+-+. -.|++|
T Consensus 4 ~y~VE~Il~~r~~~g~~~YlVkWkGy~----~--------------~~---------------~TWEp~~nl~-~~~~li 49 (62)
T 3lwe_A 4 VFEVEKILDMKTEGGKVLYKVRWKGYT----S--------------DD---------------DTWEPEIHLE-DCKEVL 49 (62)
T ss_dssp SCCEEEEEEEEEETTEEEEEEEETTSC----G--------------GG---------------CEEEEHHHHT-TCHHHH
T ss_pred eEEEEEEEEEEEcCCeEEEEEEEeCCC----C--------------cC---------------CCeeeHhHhh-ccHHHH
Confidence 567778999999999999999996431 1 11 2344444443 589999
Q ss_pred HHHHHhhhhh
Q 044842 509 DHFLQENERR 518 (602)
Q Consensus 509 ~~f~~~~~~~ 518 (602)
+.|++....+
T Consensus 50 ~~f~~~~~~~ 59 (62)
T 3lwe_A 50 LEFRKKIAEN 59 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhHhh
Confidence 9999987663
No 18
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=86.44 E-value=0.39 Score=37.91 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=18.8
Q ss_pred CCCCcccHHHHHHHHHhcCh
Q 044842 217 NGVQGIGLDTALQFVQNFSE 236 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~ 236 (602)
..|||||++++..|++.||+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs 26 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKN 26 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSS
T ss_pred HcCCCCCHHHHHHHHHHcCC
Confidence 57999999999999999997
No 19
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=85.82 E-value=0.52 Score=45.42 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.6
Q ss_pred CCCcccHHHHHHHHHhcChHHHHHHHH
Q 044842 218 GVQGIGLDTALQFVQNFSEDEILNILH 244 (602)
Q Consensus 218 GipGIG~ktA~~Li~~~~~e~iL~~l~ 244 (602)
+|+||||++|..|+..|+.+++.+.+.
T Consensus 76 ~v~GIGpk~A~~iL~~f~~~~l~~aI~ 102 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPPRLLARALL 102 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhCChHHHHHHHH
Confidence 599999999999999999988887775
No 20
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=85.53 E-value=1.3 Score=33.92 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=21.5
Q ss_pred cccceeEEEeeecCceeeEEEEEee
Q 044842 429 QYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 429 ~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
.|+..+|...|.++|..-|.|+|+.
T Consensus 2 ey~VE~Il~~r~~~g~~~YlVkWkG 26 (55)
T 3f2u_A 2 EYVVEKVLDRRVVKGKVEYLLKWKG 26 (55)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEETT
T ss_pred cEEEEEEEEEEEeCCeEEEEEEEEe
Confidence 4667789988999999999999964
No 21
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=85.00 E-value=0.51 Score=37.53 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=20.5
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEIL 240 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~iL 240 (602)
.||||||+++|..|+..|++ ++++
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l~ 41 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERVF 41 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHH
Confidence 58999999999999999986 4443
No 22
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=84.15 E-value=0.3 Score=39.80 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEIL 240 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~iL 240 (602)
.+|||||+++|.+|++.|++ ++++
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl~~l~ 51 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGLQGLR 51 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCHHHHH
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHH
Confidence 58999999999999999986 4444
No 23
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=84.02 E-value=0.71 Score=38.48 Aligned_cols=24 Identities=8% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEIL 240 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~iL 240 (602)
.+|||||+++|.+|++.|++ ++++
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~ 46 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLI 46 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHH
Confidence 58999999999999999986 4444
No 24
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=83.28 E-value=1.8 Score=34.96 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=22.5
Q ss_pred CcccceeEEEeeecCceeeEEEEEee
Q 044842 428 GQYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 428 ~~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
+.|+..+|...|.++|..-|.|+|+.
T Consensus 15 ~ey~VEkIld~R~~~g~~eYlVKWkG 40 (69)
T 1q3l_A 15 EEYAVEKIIDRRVRKGMVEYYLKWKG 40 (69)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CcEEEEEEEEEEEECCeEEEEEEEcC
Confidence 45678899999999999999999986
No 25
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=82.92 E-value=0.8 Score=44.51 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=24.7
Q ss_pred CCCcccHHHHHHHHHhcChHHHHHHHH
Q 044842 218 GVQGIGLDTALQFVQNFSEDEILNILH 244 (602)
Q Consensus 218 GipGIG~ktA~~Li~~~~~e~iL~~l~ 244 (602)
+|+||||++|+.|+..|+.+++.+.+.
T Consensus 77 ~V~GIGpk~A~~iL~~f~~~~l~~aI~ 103 (203)
T 1cuk_A 77 KTNGVGPKLALAILSGMSAQQFVNAVE 103 (203)
T ss_dssp HSSSCCHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHhhCChHHHHHHHH
Confidence 589999999999999999988888775
No 26
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=81.91 E-value=0.93 Score=38.00 Aligned_cols=23 Identities=9% Similarity=0.276 Sum_probs=20.1
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEI 239 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~i 239 (602)
..|||||++++..|++.|++ ++|
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i 44 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAEL 44 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHH
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHH
Confidence 58999999999999999996 444
No 27
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=81.11 E-value=1.9 Score=32.89 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=21.4
Q ss_pred cccceeEEEeeecCceeeEEEEEee
Q 044842 429 QYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 429 ~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
.|+..+|...|.++|..-|.|+|+.
T Consensus 3 ~y~VE~Il~~r~~~g~~~YlVKWkg 27 (55)
T 1pfb_A 3 VYAAEKIIQKRVKKGVVEYRVKWKG 27 (55)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEEEEEEEEeCCeEEEEEEEcC
Confidence 4566788888999999999999975
No 28
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=80.39 E-value=0.98 Score=37.84 Aligned_cols=24 Identities=8% Similarity=0.383 Sum_probs=20.3
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEIL 240 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~iL 240 (602)
.+|||||+++|.+|+..|++ ++++
T Consensus 35 ~~IpgIG~~~A~~Ll~~fgs~~~l~ 59 (91)
T 2a1j_B 35 TTVKSVNKTDSQTLLTTFGSLEQLI 59 (91)
T ss_dssp TTSTTCCHHHHHHHHHHHSSHHHHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHH
Confidence 58999999999999999986 4443
No 29
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=79.79 E-value=2.8 Score=31.82 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=21.5
Q ss_pred cccceeEEEeeecCceeeEEEEEee
Q 044842 429 QYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 429 ~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
.|+..+|...|.++|..-|.|+|+.
T Consensus 3 ~y~VE~Il~~r~~~g~~~YlVkWkG 27 (54)
T 3i91_A 3 VFAAEALLKRRIRKGRMEYLVKWKG 27 (54)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEEEEEEEeCCcEEEEEEEeC
Confidence 4667789999999999999999964
No 30
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=79.07 E-value=2.4 Score=32.85 Aligned_cols=25 Identities=24% Similarity=0.643 Sum_probs=21.1
Q ss_pred cccceeEEEeeecCceeeEEEEEee
Q 044842 429 QYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 429 ~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
.|+-.+|...|.++|..-|.|+|+.
T Consensus 3 ey~VE~Il~~r~~~g~~~YlVkWkG 27 (59)
T 3fdt_A 3 EYVVEKVLDRRVVKGQVEYLLKWKG 27 (59)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEEEEEEEeCCeEEEEEEEeC
Confidence 3566788888999999999999964
No 31
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=77.43 E-value=1.5 Score=42.86 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHhCCCHHHHHHHHHHcCCCCCCCCCCcccHHHHHHHHHhcChHHHHHHHH
Q 044842 193 EAGLGLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSEDEILNILH 244 (602)
Q Consensus 193 ~~~lgL~~~qli~laiL~G~DY~~~GipGIG~ktA~~Li~~~~~e~iL~~l~ 244 (602)
...||+....--.+..++ -+|+||||++|+.++..|+.+.+.+.+.
T Consensus 73 ~~LyGF~~~~Er~lf~~L------~sv~GIGpk~A~~Ils~~~~~~l~~aI~ 118 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTL------LSVSGVGPRLAMAALAVHDAPALRQVLA 118 (212)
T ss_dssp EEEEEESSHHHHHHHHHH------HTSTTCCHHHHHHHHHHSCHHHHHHHHH
T ss_pred cceEecCcHHHHHHHHHh------cCcCCcCHHHHHHHHHhCCHHHHHHHHH
Confidence 345677543333333322 2489999999999999999887766553
No 32
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=77.26 E-value=0.79 Score=44.84 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.6
Q ss_pred CCCCcccHHHHHHHHHhc
Q 044842 217 NGVQGIGLDTALQFVQNF 234 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~ 234 (602)
..+||||+|+|.+++-..
T Consensus 29 ~~LPGIG~KsA~RlA~hL 46 (212)
T 3vdp_A 29 SKLPGIGPKTAQRLAFFI 46 (212)
T ss_dssp HTSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 588999999999997654
No 33
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.64 E-value=2.4 Score=34.52 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=23.4
Q ss_pred CcccceeEEEeeecCceeeEEEEEeec
Q 044842 428 GQYEFDSIRRVKIRYGHQSYVVKWKKA 454 (602)
Q Consensus 428 ~~~~~~~i~k~r~~~g~~~~ei~W~~~ 454 (602)
..|+..+|...|.++|..-|.|+|+.=
T Consensus 9 ~ey~VE~Il~~r~~~g~~~YlVKWkGy 35 (74)
T 2d9u_A 9 QVFAAECILSKRLRKGKLEYLVKWRGW 35 (74)
T ss_dssp CCCCEEEEEEEEEETTEEEEEEEETTS
T ss_pred ccEEEEEEEEEEEeCCcEEEEEEECCC
Confidence 467888999999999999999999863
No 34
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=75.55 E-value=5.4 Score=32.32 Aligned_cols=26 Identities=38% Similarity=0.822 Sum_probs=22.7
Q ss_pred CcccceeEEEeeecCceeeEEEEEee
Q 044842 428 GQYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 428 ~~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
..|+..+|.-.|.++|..-|.|+|+-
T Consensus 12 ~~y~VE~Il~~r~~~g~~~YlVKWkG 37 (74)
T 2kvm_A 12 QVFAVESIRKKRVRKGKVEYLVKWKG 37 (74)
T ss_dssp CCCCEEEEEEEEEETTEEEEEEEETT
T ss_pred ccEEEEEEEEEEEeCCcEEEEEEEcC
Confidence 46778899999999999999999975
No 35
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=74.79 E-value=1 Score=44.45 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCCCcccHHHHHHHHHhc
Q 044842 217 NGVQGIGLDTALQFVQNF 234 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~ 234 (602)
.-+||||+|+|.+++-..
T Consensus 15 ~~LPGIG~KSA~RlA~hL 32 (228)
T 1vdd_A 15 SRLPGIGPKSAQRLAFHL 32 (228)
T ss_dssp HTSTTCCHHHHHHHHHHH
T ss_pred hHCCCCCHHHHHHHHHHH
Confidence 578999999999998664
No 36
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=74.17 E-value=3.1 Score=33.93 Aligned_cols=27 Identities=37% Similarity=0.754 Sum_probs=23.9
Q ss_pred cCcccceeEEEeeecCceeeEEEEEee
Q 044842 427 CGQYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 427 ~~~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
...|+..+|...|.++|..-|.|+|+-
T Consensus 19 ~~eyeVEkIld~r~~~g~~~YlVKWkG 45 (73)
T 2k1b_A 19 EQVFAVESIRKKRVRKGKVEYLVKWKG 45 (73)
T ss_dssp CCCCCCSEEEEEEEETTEEEEEEECTT
T ss_pred CceEEEEEEEEEEEcCCcEEEEEEECC
Confidence 456788899999999999999999985
No 37
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=72.96 E-value=1.5 Score=43.19 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=19.1
Q ss_pred CCCCcccHHHHHHHHHhcCh
Q 044842 217 NGVQGIGLDTALQFVQNFSE 236 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~ 236 (602)
.||||||+++|..|++.||+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgS 190 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGS 190 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCS
T ss_pred cCCCCcCHHHHHHHHHHcCC
Confidence 69999999999999999996
No 38
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=71.55 E-value=4.3 Score=32.99 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.7
Q ss_pred cCcccceeEEEeeecCceeeEEEEEee
Q 044842 427 CGQYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 427 ~~~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
...|+..+|.-.|.++|..-|.|+|+.
T Consensus 18 ~~eyeVEkIld~r~~~g~~~YlVKWkG 44 (72)
T 1pdq_A 18 DLVYAAEKIIQKRVKKGVVEYRVKWKG 44 (72)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEEEEEEEEeCCcEEEEEEECC
Confidence 456788899999999999999999985
No 39
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=68.92 E-value=6.9 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=21.2
Q ss_pred cccceeEEEeeecCceeeEEEEEee
Q 044842 429 QYEFDSIRRVKIRYGHQSYVVKWKK 453 (602)
Q Consensus 429 ~~~~~~i~k~r~~~g~~~~ei~W~~ 453 (602)
.|+..+|...|.++|..-|.|+|+.
T Consensus 3 ~y~VE~Il~~r~~~g~~~YlVkWkG 27 (54)
T 3h91_A 3 VFAAECILSKRLRKGKLEYLVKWRG 27 (54)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEEEEEEeCCcEEEEEEEeC
Confidence 3566788888999999999999964
No 40
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=68.37 E-value=7.6 Score=31.62 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=42.5
Q ss_pred ccCcccceeEEEeeecCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhch
Q 044842 426 LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFP 505 (602)
Q Consensus 426 ~~~~~~~~~i~k~r~~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp 505 (602)
....|+|..|.-....+|--.|.|+|+.-+ + .+..+...+...||
T Consensus 12 f~rGl~~ekI~g~~~~~Gel~fLvkWkg~d--------------------~---------------~dlVpa~~a~~k~P 56 (74)
T 2fmm_A 12 FARGLEPERIIGATDSSGELMFLMKWKNSD--------------------E---------------ADLVPAKEANVKCP 56 (74)
T ss_dssp GGGCCCEEEEEEEEEETTEEEEEEEETTCS--------------------C---------------CEEEEHHHHHHHCH
T ss_pred ccccCCceEEEEEEcCCCcEEEEEEECCCC--------------------c---------------ccEEEHHHHhhhCh
Confidence 344679999999999999999999999753 1 12234566777899
Q ss_pred HHHHHHHHhh
Q 044842 506 KKVDHFLQEN 515 (602)
Q Consensus 506 ~~v~~f~~~~ 515 (602)
.+|-.|-++.
T Consensus 57 q~VI~FYE~~ 66 (74)
T 2fmm_A 57 QVVISFYEER 66 (74)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 41
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=65.49 E-value=8.8 Score=30.45 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=39.5
Q ss_pred CcccceeEEEeeecCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhchHH
Q 044842 428 GQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKK 507 (602)
Q Consensus 428 ~~~~~~~i~k~r~~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp~~ 507 (602)
--++|..|.-....+|--.|.|+|+.-+ +++ ++. ...+...||.+
T Consensus 11 rGle~ekI~g~~~~~Gel~fLvKWKg~~--------------------~~d------------~Vp---a~e~n~~~Pql 55 (65)
T 3kup_A 11 RGLDPERIIGATDSSGELMFLMKWKDSD--------------------EAD------------LVL---AKEANMKCPQI 55 (65)
T ss_dssp GCCCEEEEEEEECTTSSCEEEEEETTCS--------------------CCE------------EEE---HHHHHHHCHHH
T ss_pred cCCCeeEEeeEEcCCCcEEEEEEECCCC--------------------hhh------------eEE---HHHHHhhChHH
Confidence 3569999999888999999999998752 111 222 34456679999
Q ss_pred HHHHHHhh
Q 044842 508 VDHFLQEN 515 (602)
Q Consensus 508 v~~f~~~~ 515 (602)
|-.|-++.
T Consensus 56 VI~fYE~~ 63 (65)
T 3kup_A 56 VIAFYEER 63 (65)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 42
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=63.98 E-value=2.6 Score=33.26 Aligned_cols=27 Identities=30% Similarity=0.618 Sum_probs=23.5
Q ss_pred CcccceeEEEeeecCceeeEEEEEeec
Q 044842 428 GQYEFDSIRRVKIRYGHQSYVVKWKKA 454 (602)
Q Consensus 428 ~~~~~~~i~k~r~~~g~~~~ei~W~~~ 454 (602)
..|+..+|...|.++|..-|.|+|+-=
T Consensus 9 ~ey~VE~Il~~r~~~g~~~YlVKWkGy 35 (64)
T 2dnv_A 9 RVFAAEALLKRRIRKGRMEYLVKWKGW 35 (64)
T ss_dssp CCCCCCCEEEEEESSSSEEEEECCSSC
T ss_pred ceEEEEEEEEEEEeCCcEEEEEEECCC
Confidence 467888999999999999999999863
No 43
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=63.72 E-value=2.4 Score=27.32 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=12.6
Q ss_pred ccccchhHHHHhhhh
Q 044842 543 KGVQLSITEFYRSAK 557 (602)
Q Consensus 543 ~~~~~~~~~~~~~~~ 557 (602)
+..|-|||+||.|+.
T Consensus 3 KrkQTs~TDFYhsKR 17 (26)
T 2zvv_Y 3 KRRQTSMTDFYHSKR 17 (26)
T ss_pred cccccchhHHHhhhc
Confidence 567999999998865
No 44
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=63.36 E-value=5.8 Score=32.45 Aligned_cols=27 Identities=30% Similarity=0.618 Sum_probs=22.4
Q ss_pred CcccceeEEEeee-cCceeeEEEEEeec
Q 044842 428 GQYEFDSIRRVKI-RYGHQSYVVKWKKA 454 (602)
Q Consensus 428 ~~~~~~~i~k~r~-~~g~~~~ei~W~~~ 454 (602)
..|+..+|.-.|. ++|..-|.|+|+.=
T Consensus 12 ~~y~VE~Il~~r~~~~g~~~YlVKWkGy 39 (78)
T 2dnt_A 12 ELYEVERIVDKRKNKKGKTEYLVRWKGY 39 (78)
T ss_dssp CSCCCCCEEEEEECTTSCEEEEECBTTB
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCC
Confidence 4678889998887 68988999999863
No 45
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=62.11 E-value=1.6 Score=43.13 Aligned_cols=23 Identities=13% Similarity=0.453 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEI 239 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~i 239 (602)
.||||||+++|..|++.||+ +.|
T Consensus 176 ~~IpGIG~k~ak~Ll~~FGSl~~i 199 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFGSVKKM 199 (226)
T ss_dssp ------------------------
T ss_pred cccCCCCHHHHHHHHHHhCCHHHH
Confidence 69999999999999999996 444
No 46
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=60.53 E-value=47 Score=31.62 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=57.0
Q ss_pred CCEEEEeHHHHHHHHhccccCCCCCChHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcchhHHHHHhhhccccccccchHH
Q 044842 25 DKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA 104 (602)
Q Consensus 25 gk~IAIDas~wL~r~~~a~~~~g~~~~~Lr~~f~r~l~lL~~~gI~PVfVFDG~~p~~K~~t~~kR~~R~~~~~~~~~~~ 104 (602)
-+.|+|||++-.+..-. ......++ +...+.-|...|..+|.||+- ..+ ......
T Consensus 24 lR~IVIDGsNVA~~~g~------~~~Fs~rg-I~~aV~yf~~rGh~~v~VfvP---~~r-------~~~~~~-------- 78 (185)
T 3v32_B 24 LRPVVIDGSNVAMSHGN------KEVFSCRG-ILLAVNWFLERGHTDITVFVP---SWR-------KEQPRP-------- 78 (185)
T ss_dssp BCCEEEEHHHHHHHHTT------TTSEEHHH-HHHHHHHHHHTTCCCEEEEEE---GGG-------GSCCCT--------
T ss_pred CCeEEEeCHHHHhhhCC------CCCcCHHH-HHHHHHHHHHcCCCceEEEec---hHh-------hhcccc--------
Confidence 36799999998875421 11223333 334556667789998888872 221 110000
Q ss_pred HhccchhhhHHHHHhHHHHHHHHHHcCCCEEeccC---------cHHHHHHHHHHcCCeeEEEcCCC
Q 044842 105 EEGILVERNQTFLKCVQECVELLELFGMPVLKAKG---------EAEALCAQLNSEGYVDACITADS 162 (602)
Q Consensus 105 k~g~~~e~~~~f~~~i~~~~~lL~~~GI~~i~AP~---------EADAqcA~L~~~g~vd~ViT~DS 162 (602)
....... .+.+-|...|+=+++-.+ .+|..+.+++..--. .|+|+|.
T Consensus 79 --~~~~~d~--------~~L~~L~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~~g-~IVSND~ 134 (185)
T 3v32_B 79 --DVPITDQ--------HILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDG-IVVSNDT 134 (185)
T ss_dssp --TSCEECT--------HHHHHHHHTTCEEEECCCC-------CCHHHHHHHHHHHTTC-EEECSCC
T ss_pred --cCCCCCH--------HHHHHHHHCCCEEECCCcccCCCcccCccHHHHHHHHHHcCC-EEEeCcc
Confidence 0000001 122344556887777666 489989999875333 5889884
No 47
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=58.49 E-value=4 Score=39.44 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.8
Q ss_pred CCCCcccHHHHHHHHHhcCh
Q 044842 217 NGVQGIGLDTALQFVQNFSE 236 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~ 236 (602)
.+|||||+++|..|++.||+
T Consensus 165 ~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 165 QSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HTSTTCCHHHHHHHHHHHSS
T ss_pred hcCCCCCHHHHHHHHHHcCC
Confidence 48999999999999999996
No 48
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=54.26 E-value=7.2 Score=31.17 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=21.4
Q ss_pred CcccceeEEEeeecC-ceee-EEEEEee
Q 044842 428 GQYEFDSIRRVKIRY-GHQS-YVVKWKK 453 (602)
Q Consensus 428 ~~~~~~~i~k~r~~~-g~~~-~ei~W~~ 453 (602)
..|+..+|...|.++ |..- |.|+|+-
T Consensus 7 ~ey~VE~Il~~r~~~~g~~~~YlVKWkG 34 (70)
T 1g6z_A 7 EEYEVERIVDEKLDRNGAVKLYRIRWLN 34 (70)
T ss_dssp CSSCCCSCSEEECCTTSSCCEEEECCTT
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEEECC
Confidence 356777888888888 8887 9999986
No 49
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=50.69 E-value=35 Score=27.66 Aligned_cols=27 Identities=26% Similarity=0.587 Sum_probs=21.6
Q ss_pred CcccceeEEEeee-cCceeeEEEEEeec
Q 044842 428 GQYEFDSIRRVKI-RYGHQSYVVKWKKA 454 (602)
Q Consensus 428 ~~~~~~~i~k~r~-~~g~~~~ei~W~~~ 454 (602)
..|+-.+|.-.|. ++|..-|.|+|+-=
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy 47 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGY 47 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESS
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCC
Confidence 4577788888776 47999999999853
No 50
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=49.27 E-value=30 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=21.1
Q ss_pred CcccceeEEEeeecCcee-eEEEEEee
Q 044842 428 GQYEFDSIRRVKIRYGHQ-SYVVKWKK 453 (602)
Q Consensus 428 ~~~~~~~i~k~r~~~g~~-~~ei~W~~ 453 (602)
..|+-.+|...|.++|.. -|.|+|+-
T Consensus 6 ~ey~VE~Il~~r~~~g~~~~YlVkWkG 32 (61)
T 3g7l_A 6 DVYEVEDILADRVNKNGINEYYIKWAG 32 (61)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEETT
T ss_pred cEEEEEEEEEEEEECCCEEEEEEEEeC
Confidence 356677889889998887 89999964
No 51
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=48.27 E-value=26 Score=28.63 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=37.1
Q ss_pred ccCcccceeEEEeeecCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhch
Q 044842 426 LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFP 505 (602)
Q Consensus 426 ~~~~~~~~~i~k~r~~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp 505 (602)
..--++|..|.-....+|--.|.|+|+.-+ ++| ++. ...+...||
T Consensus 19 f~rGle~EkIlg~t~~~Gel~fLVKWKg~~--------------------e~d------------lVp---a~ean~k~P 63 (75)
T 3i3c_A 19 FERGLEPEKIIGATDSCGDLMFLMKWKDTD--------------------EAD------------LVL---AKEANVKCP 63 (75)
T ss_dssp GGGCCCEEEEEEEEC---CCEEEEEETTSS--------------------CEE------------EEE---HHHHHHHCH
T ss_pred cccCCCeeEEeeEEccCCcEEEEEEECCCC--------------------hhc------------eEE---HHHHhhhCh
Confidence 344579999998888999999999998752 111 222 344566799
Q ss_pred HHHHHHHHhh
Q 044842 506 KKVDHFLQEN 515 (602)
Q Consensus 506 ~~v~~f~~~~ 515 (602)
.+|-.|-+++
T Consensus 64 qlVI~FYEer 73 (75)
T 3i3c_A 64 QIVIAFYEER 73 (75)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHh
Confidence 9999997653
No 52
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=47.84 E-value=25 Score=28.89 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=39.7
Q ss_pred cccceeEEEeeecCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhchHHH
Q 044842 429 QYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKKV 508 (602)
Q Consensus 429 ~~~~~~i~k~r~~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp~~v 508 (602)
.++|..|.-....+|--.|.|+|+.-+ +++ ++ +...+...||.+|
T Consensus 9 Gle~EkI~g~~~~~Gel~fLvKWKg~~--------------------~~d------------lV---pa~ean~k~PqlV 53 (78)
T 3q6s_A 9 GLEPERIIGATDSSGELMFLMKWKNSD--------------------EAD------------LV---PAKEANVKCPQVV 53 (78)
T ss_dssp CCCEEEEEEEECTTSSCEEEEEETTCS--------------------CEE------------EE---EHHHHHHHSHHHH
T ss_pred CCCceEEeeEEcCCCcEEEEEEECCCC--------------------hhh------------eE---eHHHHHhhChHHH
Confidence 468999998888999999999998663 111 22 2345566799999
Q ss_pred HHHHHhhh
Q 044842 509 DHFLQENE 516 (602)
Q Consensus 509 ~~f~~~~~ 516 (602)
-.|-++.-
T Consensus 54 I~FYE~~l 61 (78)
T 3q6s_A 54 ISFYEERL 61 (78)
T ss_dssp HHHHHTTE
T ss_pred HHHHHHhc
Confidence 99988743
No 53
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=46.63 E-value=77 Score=31.10 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=56.6
Q ss_pred CCEEEEeHHHHHHHHhccccCCCCCChHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcchhHHHHHhhhccccccccchHH
Q 044842 25 DKRVAVDLSYWIVQHETAIKKNSVPKPHLRLTFFRTINLFAKFGAFPVFVVDGTPSPLKSQARLARFYRSTIDASTLPVA 104 (602)
Q Consensus 25 gk~IAIDas~wL~r~~~a~~~~g~~~~~Lr~~f~r~l~lL~~~gI~PVfVFDG~~p~~K~~t~~kR~~R~~~~~~~~~~~ 104 (602)
-+.|+|||++-.+..- .......++ +...++-|...|...|.||+ |... ......
T Consensus 24 lR~IVIDGsNVA~~~g------~~~~Fs~rg-I~~aV~yF~~RGh~~V~Vfv---P~~r-------~~~~~~-------- 78 (223)
T 3v33_A 24 LRPVVIDGSNVAMSHG------NKEVFSCRG-ILLAVNWFLERGHTDITVFV---PSWR-------KEQPRP-------- 78 (223)
T ss_dssp BCCEEEEHHHHHHHSS------STTSEEHHH-HHHHHHHHHTTTCCCEEEEE---EGGG-------GSCCCT--------
T ss_pred CCeEEEeCHHHHhhhC------CCCCcCHHH-HHHHHHHHHHcCCCceEEEe---chhh-------hccccc--------
Confidence 3679999999876431 112223443 33456667778999888884 2221 110000
Q ss_pred HhccchhhhHHHHHhHHHHHHHHHHcCCCEEeccCc---------HHHHHHHHHHcCCeeEEEcCCC
Q 044842 105 EEGILVERNQTFLKCVQECVELLELFGMPVLKAKGE---------AEALCAQLNSEGYVDACITADS 162 (602)
Q Consensus 105 k~g~~~e~~~~f~~~i~~~~~lL~~~GI~~i~AP~E---------ADAqcA~L~~~g~vd~ViT~DS 162 (602)
....... .+.+-|...|+=+++-.++ +|..+.+++..--. .|+|+|.
T Consensus 79 --~~~~~d~--------~~L~~L~k~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~~~g-~IVSND~ 134 (223)
T 3v33_A 79 --DVPITDQ--------HILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDG-IVVSNDT 134 (223)
T ss_dssp --TSCEEST--------HHHHHHHHTTCEEEECEEEETTEEEECCHHHHHHHHHHHTTC-EEECSCC
T ss_pred --cCCCCcH--------HHHHHHHHCCCEEECCCCCcCCccccccchHHHHHHHHHcCC-EEEeCcc
Confidence 0000001 1233455568877776664 89999999876332 5888773
No 54
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=44.67 E-value=24 Score=33.59 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=38.6
Q ss_pred cceeEEEeee---cCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhchHH
Q 044842 431 EFDSIRRVKI---RYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFPKK 507 (602)
Q Consensus 431 ~~~~i~k~r~---~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp~~ 507 (602)
++.+|.-.|. ..|..-|.|+|+.-. . ++ .|=|+.+++...||++
T Consensus 132 ~VErIi~~r~~~~~~g~~~yLVKWkgl~--Y----------------~e---------------~TWE~~~~i~~~~~~~ 178 (187)
T 2b2y_A 132 IVGRIIAHSNQKSAAGYPDYYCKWQGLP--Y----------------SE---------------CSWEDGALISKKFQAC 178 (187)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEETTSC--G----------------GG---------------CEEECHHHHHHHHHHH
T ss_pred eeEEEEEeeeecCCCCcEEEEEEECCCC--h----------------hh---------------CcccchhhhhhhHHHH
Confidence 7788887777 689999999998531 1 11 4556677787889999
Q ss_pred HHHHHHh
Q 044842 508 VDHFLQE 514 (602)
Q Consensus 508 v~~f~~~ 514 (602)
++.|++-
T Consensus 179 I~~f~~R 185 (187)
T 2b2y_A 179 IDEYFSR 185 (187)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9999863
No 55
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=44.44 E-value=9.7 Score=30.37 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=16.2
Q ss_pred CCCCcccHHHHHHHHHhc
Q 044842 217 NGVQGIGLDTALQFVQNF 234 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~ 234 (602)
..|||||+++|.+|+..+
T Consensus 30 ~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TTSTTCCHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHc
Confidence 478999999999999976
No 56
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=44.21 E-value=37 Score=28.57 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=40.9
Q ss_pred ccCcccceeEEEeeecCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHhhch
Q 044842 426 LCGQYEFDSIRRVKIRYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHSAFP 505 (602)
Q Consensus 426 ~~~~~~~~~i~k~r~~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ayp 505 (602)
....++|..|.-....+|--.|.|+|+..+ +++ ++. ...+...||
T Consensus 22 F~RGle~EkIlgat~~~Gel~fLVKWKg~~--------------------e~D------------lVp---a~ean~k~P 66 (87)
T 3p7j_A 22 FDRGLEAEKILGASDNNGRLTFLIQFKGVD--------------------QAE------------MVP---SSVANEKIP 66 (87)
T ss_dssp TTTTCCEEEEEEEEEETTEEEEEEEETTCS--------------------SCE------------EEE---HHHHHHHCH
T ss_pred ccCCCCceEEeeEEccCCcEEEEEEECCCC--------------------ccc------------eEe---HHHHhhhCh
Confidence 344579999998888899999999998752 111 222 345667799
Q ss_pred HHHHHHHHhhh
Q 044842 506 KKVDHFLQENE 516 (602)
Q Consensus 506 ~~v~~f~~~~~ 516 (602)
.+|-.|-++.-
T Consensus 67 qlVI~FYEerl 77 (87)
T 3p7j_A 67 RMVIHFYEERL 77 (87)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999977643
No 57
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=42.45 E-value=21 Score=33.67 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=38.8
Q ss_pred CcccceeEEEeee-----cCceeeEEEEEeeccccccccccCCCCCcchhhhhcccCCccccCCCcceeeehhhhhHHHh
Q 044842 428 GQYEFDSIRRVKI-----RYGHQSYVVKWKKAASAISGVKYTAPVDSDLHLEEFMEYPQIHVDGDCWFLLTDENMKLVHS 502 (602)
Q Consensus 428 ~~~~~~~i~k~r~-----~~g~~~~ei~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~~~l~~~ 502 (602)
..+++.+|.-.|. ..|..-|.|+|+.-. . ++ .|=|+.+.+..
T Consensus 119 e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~--y----------------~e---------------~TWE~~~~~~~ 165 (177)
T 2h1e_A 119 EFHVPERIIDSQRASLEDGTSQLQYLVKWRRLN--Y----------------DE---------------ATWENATDIVK 165 (177)
T ss_dssp HTTSEEEEEEEEEEECTTSCEEEEEEEEETTSC--S----------------TT---------------CEEEEHHHHHH
T ss_pred ccceeEEEEEEeeecccCCCCcEEEEEEeCCCC--c----------------cc---------------ccccChHHhhh
Confidence 4568888888885 689999999998531 1 11 35566666767
Q ss_pred hchHHHHHHHH
Q 044842 503 AFPKKVDHFLQ 513 (602)
Q Consensus 503 ayp~~v~~f~~ 513 (602)
.||++|+.|++
T Consensus 166 ~~~~~I~~y~~ 176 (177)
T 2h1e_A 166 LAPEQVKHFQK 176 (177)
T ss_dssp HCHHHHHHHTC
T ss_pred hHHHHHHHHHh
Confidence 79999999964
No 58
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=39.20 E-value=35 Score=28.71 Aligned_cols=26 Identities=19% Similarity=0.625 Sum_probs=21.6
Q ss_pred CcccceeEEEeee--cCceeeEEEEEee
Q 044842 428 GQYEFDSIRRVKI--RYGHQSYVVKWKK 453 (602)
Q Consensus 428 ~~~~~~~i~k~r~--~~g~~~~ei~W~~ 453 (602)
..|+-.+|.-.|+ ++|..-|.|+|+-
T Consensus 29 eey~VE~Il~~r~~~~~g~~~YlVkWkG 56 (92)
T 2rso_A 29 DEYVVEKVLKHRMARKGGGYEYLLKWEG 56 (92)
T ss_dssp CCCCEEEEEEEEECTTSSCEEEEEEETT
T ss_pred ceEEEEEEEEEEeecCCCEEEEEEEEcc
Confidence 4678888988886 5799999999984
No 59
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.78 E-value=38 Score=26.87 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=20.1
Q ss_pred cCcccceeEEEeeec----Cc--eeeEEEEEee
Q 044842 427 CGQYEFDSIRRVKIR----YG--HQSYVVKWKK 453 (602)
Q Consensus 427 ~~~~~~~~i~k~r~~----~g--~~~~ei~W~~ 453 (602)
...++..+|.-.|.+ +| ..-|.|+|+.
T Consensus 9 pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkg 41 (68)
T 2epb_A 9 PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCS 41 (68)
T ss_dssp SSCCCCCEEEEEEEEECSSSCCEEEEEEEECTT
T ss_pred CCceEEeEEEEEEecccccCCCcceEEEEEEcC
Confidence 445577888887754 47 7789999984
No 60
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=37.56 E-value=17 Score=38.98 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=19.6
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEI 239 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~i 239 (602)
..|||||+++|..|+..||+ +.+
T Consensus 471 tAIaGIGp~tAeRLLEkFGSVe~V 494 (685)
T 4gfj_A 471 ISIRGIDRERAERLLKKYGGYSKV 494 (685)
T ss_dssp HTSTTCCHHHHHHHHHHHTSHHHH
T ss_pred eccCCCCHHHHHHHHHHhcCHHHH
Confidence 45899999999999999996 444
No 61
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=36.45 E-value=22 Score=39.45 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCCCcccHHHHHHHHHh--cChHHHHHHH
Q 044842 217 NGVQGIGLDTALQFVQN--FSEDEILNIL 243 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~--~~~e~iL~~l 243 (602)
-+|+||||++|..|+.. ...+++.+.+
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 48999999999999998 3347776654
No 62
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=32.65 E-value=14 Score=33.50 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=14.2
Q ss_pred CCCCcccHHHHHHHHH
Q 044842 217 NGVQGIGLDTALQFVQ 232 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~ 232 (602)
..+|||||++|-+||+
T Consensus 66 ~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 66 IQYRGLYPTLAKLIVK 81 (134)
T ss_dssp GGSTTCTHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHH
Confidence 3689999999999994
No 63
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=31.10 E-value=31 Score=38.24 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=19.3
Q ss_pred CCCcccHHHHHHHHHhcC---hHHHHHHH
Q 044842 218 GVQGIGLDTALQFVQNFS---EDEILNIL 243 (602)
Q Consensus 218 GipGIG~ktA~~Li~~~~---~e~iL~~l 243 (602)
+|+||||++|+.++...| .+++...+
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 789999999999988743 35655544
No 64
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=30.99 E-value=19 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=21.3
Q ss_pred cCcccceeEEEeee-cCceeeEEEEEeec
Q 044842 427 CGQYEFDSIRRVKI-RYGHQSYVVKWKKA 454 (602)
Q Consensus 427 ~~~~~~~~i~k~r~-~~g~~~~ei~W~~~ 454 (602)
..-++..+|.-.|. ++|..-|.|+|+.=
T Consensus 9 pe~~~VeRIi~~r~~~~g~~eYLVKWkgl 37 (64)
T 2ee1_A 9 PEWMMIHRILNHSVDKKGHVHYLIKWRDL 37 (64)
T ss_dssp CSSCCCCCCCEEEECTTCCEEEEECCTTS
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEEcCC
Confidence 34456777877777 58999999999864
No 65
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=29.09 E-value=99 Score=33.20 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHcCCCEEeccCcHHHHHHHHHHcCCeeEEEcC
Q 044842 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACITA 160 (602)
Q Consensus 117 ~~~i~~~~~lL~~~GI~~i~AP~EADAqcA~L~~~g~vd~ViT~ 160 (602)
.+.+.++.+-|+.+|+++++.-+++...+..|++.--++.|+++
T Consensus 91 ~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 134 (482)
T 2xry_A 91 LKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTD 134 (482)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEe
Confidence 45566777778888888888888888888888775445555553
No 66
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=26.06 E-value=2 Score=32.89 Aligned_cols=21 Identities=29% Similarity=0.688 Sum_probs=16.3
Q ss_pred eeEEEeeecC-cee-eEEEEEee
Q 044842 433 DSIRRVKIRY-GHQ-SYVVKWKK 453 (602)
Q Consensus 433 ~~i~k~r~~~-g~~-~~ei~W~~ 453 (602)
.+|.-.|.++ |.. -|.|+|+.
T Consensus 4 E~Ild~r~~~~g~~~~YlVKWkg 26 (54)
T 1x3p_A 4 ESVIGKRVGDDGKTIEYLVKWTD 26 (54)
T ss_dssp SCCCCBSSCSSSCCCCBCCCCSS
T ss_pred EEEEEEEEcCCCcEEEEEEEECC
Confidence 3566667776 888 89999994
No 67
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=23.88 E-value=51 Score=33.32 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=26.0
Q ss_pred CCCCcccHHHHHHHHHhcCh-HHHHHHHHhh
Q 044842 217 NGVQGIGLDTALQFVQNFSE-DEILNILHKI 246 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~-e~iL~~l~~~ 246 (602)
-.||||+++.|..|+..|++ ..+++.+++.
T Consensus 240 ~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~ 270 (311)
T 2ziu_A 240 MQISGVSGDKAAAVLEHYSTVSSLLQAYDKC 270 (311)
T ss_dssp TTBTTCCHHHHHHHHHHCSSHHHHHHHHHHC
T ss_pred HhccCCCHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 47899999999999999996 7888887664
No 68
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=23.84 E-value=45 Score=34.45 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.6
Q ss_pred CCCCcccHHHHHHHHHhcCh---HHHHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE---DEILN 241 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~---e~iL~ 241 (602)
..|+|||++||.+|..+ |. +++.+
T Consensus 99 ~~v~GiG~k~a~~l~~~-Gi~tledL~~ 125 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQ-GFRSLEDIRS 125 (335)
T ss_dssp HTSTTCCHHHHHHHHHT-TCCSHHHHHH
T ss_pred hcCCCcCHHHHHHHHHc-CCCCHHHHHH
Confidence 48999999999999988 73 55544
No 69
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=23.33 E-value=96 Score=34.09 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHc---CCCEEeccCcHHHHHHHHHHcCCeeEEEc
Q 044842 117 LKCVQECVELLELF---GMPVLKAKGEAEALCAQLNSEGYVDACIT 159 (602)
Q Consensus 117 ~~~i~~~~~lL~~~---GI~~i~AP~EADAqcA~L~~~g~vd~ViT 159 (602)
.+.+.++.+-|+.+ |++.++.-|++...+..|++.--++.|++
T Consensus 60 ~~sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~~~a~~V~~ 105 (538)
T 3tvs_A 60 LDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICI 105 (538)
T ss_dssp HHHHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHHHCEEEECE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHcCCCEEEE
Confidence 34566677777777 88888877888777777776545555555
No 70
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=23.26 E-value=17 Score=36.03 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=0.0
Q ss_pred CCCCCcccHHHHHHHHHh-cCh
Q 044842 216 LNGVQGIGLDTALQFVQN-FSE 236 (602)
Q Consensus 216 ~~GipGIG~ktA~~Li~~-~~~ 236 (602)
+..|||||+++|..|+.. |++
T Consensus 17 L~~IpGIGpk~a~~Ll~~gf~s 38 (241)
T 1vq8_Y 17 LTDISGVGPSKAESLREAGFES 38 (241)
T ss_dssp ----------------------
T ss_pred HhcCCCCCHHHHHHHHHcCCCC
Confidence 358999999999999998 543
No 71
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=22.92 E-value=1.2e+02 Score=33.09 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHcCCCEEeccCcHHHHHHHHHHcCCeeEEEc
Q 044842 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159 (602)
Q Consensus 117 ~~~i~~~~~lL~~~GI~~i~AP~EADAqcA~L~~~g~vd~ViT 159 (602)
.+.+.++.+-|+.+|+++++.-|++...+..|.+.--++.|++
T Consensus 88 ~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 130 (543)
T 2wq7_A 88 QQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTF 130 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEE
Confidence 3445555566666666666666666666666655444444444
No 72
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=22.77 E-value=34 Score=33.22 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.3
Q ss_pred CCCCCcccHHHHHHHHHhcCh
Q 044842 216 LNGVQGIGLDTALQFVQNFSE 236 (602)
Q Consensus 216 ~~GipGIG~ktA~~Li~~~~~ 236 (602)
+..|||||+|+|-+|+.++..
T Consensus 125 L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 125 LTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHHTT
T ss_pred HhhCCCCCHHHHHHHHHHHHH
Confidence 469999999999999988753
No 73
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=22.19 E-value=48 Score=34.95 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=17.1
Q ss_pred CCCCcccHHHHHHHHHhcCh
Q 044842 217 NGVQGIGLDTALQFVQNFSE 236 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~ 236 (602)
-.|+|||++||.+|.++ |.
T Consensus 124 ~~I~GvGpk~a~~ly~~-Gi 142 (381)
T 1jms_A 124 TSVFGVGLKTAEKWFRM-GF 142 (381)
T ss_dssp HTSTTCCHHHHHHHHHT-TC
T ss_pred HccCCCCHHHHHHHHHc-CC
Confidence 38999999999999998 74
No 74
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=21.69 E-value=41 Score=28.20 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=16.4
Q ss_pred CCCCcccHHHHHHHHHhcC
Q 044842 217 NGVQGIGLDTALQFVQNFS 235 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~ 235 (602)
..|||||+++|.+|+..+.
T Consensus 43 ~~ipGIG~~~A~~Il~~r~ 61 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWRE 61 (98)
T ss_dssp HHSTTCCHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHH
Confidence 4789999999999998763
No 75
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=21.07 E-value=45 Score=34.44 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=19.4
Q ss_pred CCCCcccHHHHHHHHHhcCh---HHHHH
Q 044842 217 NGVQGIGLDTALQFVQNFSE---DEILN 241 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~---e~iL~ 241 (602)
..|+|||++||.+|..+ |. +++..
T Consensus 101 ~~V~GiGpk~a~~l~~~-Gi~tledL~~ 127 (335)
T 2fmp_A 101 TRVSGIGPSAARKFVDE-GIKTLEDLRK 127 (335)
T ss_dssp TTSTTCCHHHHHHHHHT-TCCSHHHHHT
T ss_pred hCCCCCCHHHHHHHHHc-CCCCHHHHHH
Confidence 49999999999999998 73 44443
No 76
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=20.81 E-value=95 Score=32.81 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCCCcccHHHHHHHHHhcCh-HHHHHHHHhh
Q 044842 197 GLKRKHLIAMSLLIGNDHDLNGVQGIGLDTALQFVQNFSE-DEILNILHKI 246 (602)
Q Consensus 197 gL~~~qli~laiL~G~DY~~~GipGIG~ktA~~Li~~~~~-e~iL~~l~~~ 246 (602)
-++.+.+.....| .-+||||++++.+|++.||+ +++++.+..+
T Consensus 16 ~m~~~e~~~wL~L-------~~~~gvG~~~~~~Ll~~fgs~~~~~~a~~~~ 59 (382)
T 3maj_A 16 VLTEAQRIDWMRL-------IRAENVGPRTFRSLINHFGSARAALERLPEL 59 (382)
T ss_dssp CSCHHHHHHHHHH-------HTSTTCCHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCHHHHHHcCHHH
Confidence 3555555555555 36789999999999999996 7888765443
No 77
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=20.71 E-value=1.6e+02 Score=32.11 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHcCCCEEeccCcHHHHHHHHHHcCCeeEEEc
Q 044842 117 LKCVQECVELLELFGMPVLKAKGEAEALCAQLNSEGYVDACIT 159 (602)
Q Consensus 117 ~~~i~~~~~lL~~~GI~~i~AP~EADAqcA~L~~~g~vd~ViT 159 (602)
.+.+.++.+-|+.+|++.++--|++... ..|++.--++.|++
T Consensus 94 ~~sL~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 94 LRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSCTTHH-HHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHcCCceEEEecChHHH-HHHHHhcCCCEEEe
Confidence 4556677777888888888877777777 77766545666766
No 78
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=20.48 E-value=21 Score=40.12 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHHhcCh-HHHH
Q 044842 218 GVQGIGLDTALQFVQNFSE-DEIL 240 (602)
Q Consensus 218 GipGIG~ktA~~Li~~~~~-e~iL 240 (602)
||||||+++|..|++.|++ +.|.
T Consensus 533 GIp~VG~~~ak~La~~Fgsle~L~ 556 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLDAIA 556 (615)
T ss_dssp ------------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999986 4444
No 79
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=20.19 E-value=53 Score=34.27 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=17.0
Q ss_pred CCCCcccHHHHHHHHHhcCh
Q 044842 217 NGVQGIGLDTALQFVQNFSE 236 (602)
Q Consensus 217 ~GipGIG~ktA~~Li~~~~~ 236 (602)
-.|+|||++||.+|.++ |.
T Consensus 105 ~~I~GvG~kta~~l~~~-Gi 123 (360)
T 2ihm_A 105 TQVFGVGVKTANRWYQE-GL 123 (360)
T ss_dssp HTSTTCCHHHHHHHHHT-TC
T ss_pred hCCCCCCHHHHHHHHHc-CC
Confidence 48999999999999988 74
Done!