BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044843
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S-
Adenosylmethionine Synthetase 2
Length = 396
Score = 277 bits (709), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 131/197 (66%), Positives = 157/197 (79%), Gaps = 2/197 (1%)
Query: 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN 62
TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET KT M+++ GEIT++A
Sbjct: 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 63 VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGD 122
VDY+K+VR+ + IG+ G D C VLV +EQQSPDIAQGV HL + E+IGAGD
Sbjct: 78 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGAGD 135
Query: 123 QGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
QG MFGYATDET E MPL+ VLA KL AKL E+R+NGT PWLRPD KTQVTV+Y + GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 183 MVPVRVHTVLISTQHDE 199
++P+RVHT++IS QHDE
Sbjct: 196 VLPIRVHTIVISVQHDE 212
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 262 bits (670), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 123/199 (61%), Positives = 156/199 (78%), Gaps = 2/199 (1%)
Query: 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
M F+FTSESV EGHPDK+CDQ+SDAVLDA L QDP++KVACET KT MV++ GEIT+
Sbjct: 4 MGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSM 63
Query: 61 ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
A VDY+++VRDT + IG+ G D C VLV +EQQSPDIAQ V HL + E++GA
Sbjct: 64 AMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGA 121
Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
GDQG MFGYATDET E MPL+ +LA KL A++ ++R++G PWLRPD KTQVTV+Y +N
Sbjct: 122 GDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDN 181
Query: 181 GAMVPVRVHTVLISTQHDE 199
GA++PVR+HT++IS QH+E
Sbjct: 182 GAVIPVRIHTIVISVQHNE 200
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 259 bits (663), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 122/197 (61%), Positives = 154/197 (78%), Gaps = 2/197 (1%)
Query: 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN 62
F+FTSESV EGHPDK+CDQ+SDAVLDA L QDP++KVACET KT MV++ GEIT+ A
Sbjct: 18 AFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAM 77
Query: 63 VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGD 122
+DY+++VRDT + IG+ G D C VLV +EQQSPDIAQ V HL + E++GAGD
Sbjct: 78 IDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGD 135
Query: 123 QGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
QG MFGYATDET E MPL+ VLA KL ++ ++R++G PWLRPD KTQVTV+Y +NGA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGA 195
Query: 183 MVPVRVHTVLISTQHDE 199
++PVRVHT++IS QH+E
Sbjct: 196 VIPVRVHTIVISVQHNE 212
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 252 bits (644), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 120/194 (61%), Positives = 148/194 (76%), Gaps = 2/194 (1%)
Query: 4 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANV 63
F FTSESV+ GHPDK+CDQ+SDA+LDACLAQDP S VACET TKT +++V GEITT A +
Sbjct: 23 FFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVI 82
Query: 64 DYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQ 123
D KIVR +SIG+ + G D C VL +EQQS DIA+GV H+ K+ E+IGAGDQ
Sbjct: 83 DIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGV--HVEKKEEDIGAGDQ 140
Query: 124 GHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAM 183
G MFGYATDE+ E+MPL+HVL+TKL +L E R+ G PWLRPD K+QVT+EY G +
Sbjct: 141 GIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHL 200
Query: 184 VPVRVHTVLISTQH 197
P+RVHT++ISTQH
Sbjct: 201 KPIRVHTIVISTQH 214
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-adenosylmethionine Synthetase
pdb|1P7L|A Chain A, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|B Chain B, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|C Chain C, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|D Chain D, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1RG9|A Chain A, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|B Chain B, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|C Chain C, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|D Chain D, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1MXA|A Chain A, S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB|A Chain A, S-Adenosylmethionine Synthetase With Adp
pdb|1MXC|A Chain A, S-adenosylmethionine Synthetase With 8-br-adp
pdb|1XRA|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
pdb|1XRC|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Length = 383
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/197 (58%), Positives = 139/197 (70%), Gaps = 11/197 (5%)
Query: 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVD 64
LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET KT MV+V GEITT A VD
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVD 63
Query: 65 YEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAE--EIGAGD 122
E+I R+T R IG+ D+G DA+ C VL I +QSPDI QGV RA+ E GAGD
Sbjct: 64 IEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGV-----DRADPLEQGAGD 118
Query: 123 QGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
QG MFGYAT+ET LMP A +L + EVRKNGT PWLRPD K+QVT +Y ++G
Sbjct: 119 QGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGK 176
Query: 183 MVPVRVHTVLISTQHDE 199
+ V + V++STQH E
Sbjct: 177 I--VGIDAVVLSTQHSE 191
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/203 (56%), Positives = 131/203 (64%), Gaps = 14/203 (6%)
Query: 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN-- 62
LFTSESV EGHPDK+CD VSD+VLDA LA DP S+VA ET T V V GE+TT A
Sbjct: 11 LFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 63 -VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEI--- 118
D IVR+ IG+ S D G D C V + I QSPDIAQGV R E
Sbjct: 71 FADITNIVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTV 174
GAGDQG MFGYA ++TPELMPL LA +L +LTEVRKNG P+LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYYNENGAMVPVRVHTVLISTQH 197
Y + VPVR+ TV+ISTQH
Sbjct: 191 AYEDR----VPVRLDTVVISTQH 209
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
Length = 399
Score = 209 bits (532), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 136/194 (70%), Gaps = 5/194 (2%)
Query: 4 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANV 63
+LFTSESV+EGHPDK+ DQ+SDA+LDA LAQD S+VA ET T +V++ GEITT AN+
Sbjct: 9 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANI 68
Query: 64 DYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQ 123
DY +I RDT + IG+ + D G+D C VLV ++QSPDIAQGV ++ GAGDQ
Sbjct: 69 DYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQ-GAGDQ 127
Query: 124 GHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAM 183
G MFGYA DETPELMPL L+ +L + +R++G PWLRPD K+QVTV Y +
Sbjct: 128 GLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGK--- 184
Query: 184 VPVRVHTVLISTQH 197
P + TV++STQH
Sbjct: 185 -PHSIDTVVLSTQH 197
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
pdb|3S82|B Chain B, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
Length = 407
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/203 (55%), Positives = 132/203 (65%), Gaps = 14/203 (6%)
Query: 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN-- 62
LFTSESV EGHPDK+CD +SD+VLDA LAQDP S+VA ET T V V GE+TT A
Sbjct: 11 LFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 63 -VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEI--- 118
D VR+ IG+ S D G D C V + I QSPDIAQGV R E
Sbjct: 71 FADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTV 174
GAGDQG MFGYA ++TPE MPL LA +L +LTEVRKNG P+LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYYNENGAMVPVRVHTVLISTQH 197
E+ ++ VPVR+ TV+ISTQH
Sbjct: 191 EFEDD----VPVRLDTVVISTQH 209
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S-
Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues
Are Replaced With Selenomethionine Residues (mse)
Length = 383
Score = 206 bits (525), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 135/197 (68%), Gaps = 11/197 (5%)
Query: 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVD 64
LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET KT V+V GEITT A VD
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGXVLVGGEITTSAWVD 63
Query: 65 YEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAE--EIGAGD 122
E+I R+T R IG+ D G DA+ C VL I +QSPDI QGV RA+ E GAGD
Sbjct: 64 IEEITRNTVREIGYVHSDXGFDANSCAVLSAIGKQSPDINQGV-----DRADPLEQGAGD 118
Query: 123 QGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
QG FGYAT+ET L P A +L + EVRKNGT PWLRPD K+QVT +Y ++G
Sbjct: 119 QGLXFGYATNETDVLXPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGK 176
Query: 183 MVPVRVHTVLISTQHDE 199
+ V + V++STQH E
Sbjct: 177 I--VGIDAVVLSTQHSE 191
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 206 bits (524), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 113/203 (55%), Positives = 128/203 (63%), Gaps = 14/203 (6%)
Query: 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN-- 62
LFTSESV EGHPDK+CD +SD+VLDA LA DP S+VA ET T V V GE+TT A
Sbjct: 12 LFTSESVTEGHPDKICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEA 71
Query: 63 -VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEI--- 118
D VR IG+ S D G D C V + I QSPDIAQGV R E
Sbjct: 72 FADITNTVRARILEIGYDSSDKGFDGATCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 131
Query: 119 ----GAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTV 174
GAGDQG MFGYA + TPELMPL LA +L +LTEVRKNG P+LRPDGKTQVT+
Sbjct: 132 LDSQGAGDQGLMFGYAINATPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 191
Query: 175 EYYNENGAMVPVRVHTVLISTQH 197
Y + VPVR+ TV+ISTQH
Sbjct: 192 AYEDN----VPVRLDTVVISTQH 210
>pdb|2FIQ|A Chain A, Crystal Structure Of Putative Tagatose 6-Phosphate
Kinase
pdb|2FIQ|B Chain B, Crystal Structure Of Putative Tagatose 6-Phosphate
Kinase
pdb|2FIQ|C Chain C, Crystal Structure Of Putative Tagatose 6-Phosphate
Kinase
pdb|2FIQ|D Chain D, Crystal Structure Of Putative Tagatose 6-Phosphate
Kinase
Length = 420
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 27 VLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLD 86
V++A LA D +S +N V FG T D+ + V +GF + + L
Sbjct: 26 VIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGXTPADFREFVFAIADKVGFARERIILG 85
Query: 87 ADH 89
DH
Sbjct: 86 GDH 88
>pdb|1SPI|A Chain A, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
pdb|1SPI|B Chain B, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
pdb|1SPI|C Chain C, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
pdb|1SPI|D Chain D, Crystal Structure Of Spinach Chloroplast Fructose-1,6-
Bisphosphatase At 2.8 Angstroms Resolution
Length = 358
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 13 EGHPDKLCDQVSDAVLDACL----------AQDPDSKVACETCTKTNMVMVFGEITTKAN 62
+G K D VS+ V +CL +++ D VA E N ++VF + +N
Sbjct: 76 QGEDQKKLDVVSNEVFSSCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSN 135
Query: 63 VDYEKIVRDTCRSIGFTSDDVGLDADH 89
+D + + I +D+ +D+DH
Sbjct: 136 ID-AAVSTGSIFGIYSPNDECIVDSDH 161
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 57 ITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAE 116
+ T AN D + I+R + R G D+ D+ Q P I+ + GHL +
Sbjct: 299 VITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISP-LFGHLDMHS- 356
Query: 117 EIGAGDQGHMFGYATDETPELMPLSHVLATKLGA--KLTEVRKNGTCPWLR 165
G G M G+ +P S A LG +L ++ GT +LR
Sbjct: 357 ---GGQSGPMHGFGFG-----LPTSRAYAEYLGGSLQLQSLQGIGTDVYLR 399
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 57 ITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAE 116
+ T AN D + I+R + R G D+ D+ Q P I+ + GHL +
Sbjct: 299 VITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISP-LFGHLDMHS- 356
Query: 117 EIGAGDQGHMFGYATDETPELMPLSHVLATKLGA--KLTEVRKNGTCPWLR 165
G G M G+ +P S A LG +L ++ GT +LR
Sbjct: 357 ---GGQSGPMHGFGFG-----LPTSRAYAEYLGGSLQLQSLQGIGTDVYLR 399
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 57 ITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAE 116
+ T AN D + I+R + R G D+ D+ Q P I+ + GHL +
Sbjct: 269 VITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISP-LFGHLDMHS- 326
Query: 117 EIGAGDQGHMFGYATDETPELMPLSHVLATKLGA--KLTEVRKNGTCPWLR 165
G G M G+ +P S A LG +L ++ GT +LR
Sbjct: 327 ---GGQSGPMHGFGFG-----LPTSRAYAEYLGGSLQLQSLQGIGTDVYLR 369
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 149 GAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200
G L + RKN PD + +E Y + G +VPV + L+ + D+T
Sbjct: 35 GELLRDERKN-------PDSQYGELIEKYIKEGKIVPVEITISLLKREMDQT 79
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 29 DACLAQDPDSKVACETCTKTNMVMVFGEITTKANV-DYEKIVRDTCRSIGFTSDDVGLDA 87
D CL DPD V C T K +V E + ++ D V R+ T + L
Sbjct: 10 DGCLHADPDLGVLCPTGCKLQDTLVRQERPIRKSIEDLRNTVDSVSRTSSSTFQYITLLK 69
Query: 88 DHCKVLVNIEQQSPDIAQGVHGHLTK 113
+ K N Q + ++ HL K
Sbjct: 70 NMWKGRQNQVQDNENVVNEYSSHLEK 95
>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
Length = 342
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 155 VRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDE 199
V K G C ++ P G + + Y E+GA V R I+ + D+
Sbjct: 97 VMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK 141
>pdb|3GBO|A Chain A, Crystal Structure Of Bmoompalpha-I, A Non-Hemorrhagic
Metalloproteinase Isolated From Bothrops Moojeni Snake
Venom
Length = 200
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 109 GHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKL 152
GH+ RA G D H G D +P+ + ++ +A +LG L
Sbjct: 103 GHVIGRAFTGGMCDPRHSVGVVMDHSPKNLQVAVTMAHELGHNL 146
>pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 7 TSESVN-EGHPDKLCDQVSDAVLDACL----------AQDPDSKVACETCTKTNMVMVFG 55
T +VN +G K D +S+ V CL +++ D VA E N ++VF
Sbjct: 67 TQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFD 126
Query: 56 EITTKANVD 64
+ +N+D
Sbjct: 127 PLDGSSNLD 135
>pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
Length = 357
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 7 TSESVN-EGHPDKLCDQVSDAVLDACL----------AQDPDSKVACETCTKTNMVMVFG 55
T +VN +G K D +S+ V CL +++ D VA E N ++VF
Sbjct: 67 TQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFD 126
Query: 56 EITTKANVD 64
+ +N+D
Sbjct: 127 PLDGSSNLD 135
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 235
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 151 KLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDE 199
+ E R G C + P V NG V V +HT L +HDE
Sbjct: 101 EFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDE 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,242,616
Number of Sequences: 62578
Number of extensions: 251583
Number of successful extensions: 571
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 23
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)