Query 044843
Match_columns 200
No_of_seqs 169 out of 1041
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 1.7E-98 4E-103 678.3 21.3 195 2-200 3-197 (388)
2 PLN02243 S-adenosylmethionine 100.0 1.9E-97 4E-102 676.9 22.2 200 1-200 1-200 (386)
3 KOG1506 S-adenosylmethionine s 100.0 3.7E-97 8E-102 657.0 18.5 197 2-200 4-200 (383)
4 PRK12459 S-adenosylmethionine 100.0 1.7E-96 4E-101 671.2 21.9 194 1-200 1-196 (386)
5 PRK05250 S-adenosylmethionine 100.0 8.9E-96 2E-100 666.2 22.1 191 3-200 2-192 (384)
6 PTZ00104 S-adenosylmethionine 100.0 9.6E-96 2E-100 667.8 21.6 197 2-200 9-206 (398)
7 TIGR01034 metK S-adenosylmethi 100.0 9.2E-96 2E-100 664.4 21.3 189 5-200 1-189 (377)
8 PF00438 S-AdoMet_synt_N: S-ad 100.0 4.1E-54 9E-59 331.7 6.1 100 2-101 1-100 (100)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 3.9E-48 8.4E-53 306.9 9.7 81 117-200 2-82 (120)
10 PF01941 AdoMet_Synthase: S-ad 97.8 0.00017 3.8E-09 67.6 10.7 144 12-171 26-199 (396)
11 PRK04439 S-adenosylmethionine 97.6 0.00066 1.4E-08 63.9 10.9 144 12-170 26-198 (399)
12 COG1812 MetK Archaeal S-adenos 96.0 0.057 1.2E-06 50.7 9.7 146 11-171 25-200 (400)
13 PF14084 DUF4264: Protein of u 68.1 1.4 3E-05 30.8 -0.4 39 98-142 11-49 (52)
14 PRK11023 outer membrane lipopr 66.4 11 0.00023 31.8 4.5 57 17-77 121-178 (191)
15 PRK11198 LysM domain/BON super 60.7 16 0.00034 29.6 4.4 40 20-60 24-63 (147)
16 PF04208 MtrA: Tetrahydrometha 54.3 16 0.00035 31.3 3.5 42 33-75 17-65 (176)
17 PF04566 RNA_pol_Rpb2_4: RNA p 53.2 31 0.00067 24.5 4.3 36 124-178 5-40 (63)
18 PF02171 Piwi: Piwi domain; I 49.1 14 0.0003 32.2 2.4 22 134-155 279-300 (302)
19 cd01269 PLX Pollux (PLX) Phosp 46.5 67 0.0015 26.4 5.8 82 51-135 6-94 (129)
20 COG4081 Uncharacterized protei 45.9 13 0.00028 31.0 1.6 23 129-151 9-31 (148)
21 PRK14053 methyltransferase; Pr 42.0 35 0.00076 29.7 3.7 43 32-75 16-62 (194)
22 PRK04964 hypothetical protein; 41.0 25 0.00054 25.7 2.3 25 115-151 12-36 (66)
23 PF06786 UPF0253: Uncharacteri 39.5 28 0.00061 25.4 2.3 26 115-152 12-37 (66)
24 PRK00964 tetrahydromethanopter 39.5 34 0.00074 30.4 3.3 43 32-75 19-69 (225)
25 PF00379 Chitin_bind_4: Insect 39.2 13 0.00029 24.8 0.6 20 158-178 28-47 (52)
26 TIGR02889 spore_YpeB germinati 38.3 1.3E+02 0.0029 28.9 7.4 97 38-141 262-371 (435)
27 PRK09819 alpha-mannosidase; Pr 37.8 11 0.00023 38.7 -0.0 62 13-76 41-108 (875)
28 PF01074 Glyco_hydro_38: Glyco 35.6 6.3 0.00014 34.0 -1.8 49 26-74 50-101 (275)
29 COG5309 Exo-beta-1,3-glucanase 35.3 32 0.0007 31.7 2.6 85 16-108 110-194 (305)
30 PRK11023 outer membrane lipopr 32.9 1.4E+02 0.003 25.1 5.9 43 18-61 44-89 (191)
31 cd04658 Piwi_piwi-like_Euk Piw 32.9 36 0.00079 31.8 2.7 28 126-153 420-447 (448)
32 PF13986 DUF4224: Domain of un 32.7 51 0.0011 22.1 2.6 27 149-175 18-44 (47)
33 TIGR03315 Se_ygfK putative sel 32.1 32 0.00069 36.5 2.3 18 135-152 325-342 (1012)
34 PRK10568 periplasmic protein; 31.8 1.3E+02 0.0028 25.6 5.6 51 23-76 61-111 (203)
35 PF09001 DUF1890: Domain of un 31.5 15 0.00032 30.5 -0.2 20 131-150 6-25 (139)
36 TIGR01111 mtrA N5-methyltetrah 30.1 60 0.0013 29.1 3.3 43 32-75 19-69 (238)
37 PHA01812 hypothetical protein 28.0 70 0.0015 25.2 3.1 54 119-181 55-109 (122)
38 PF03645 Tctex-1: Tctex-1 fami 27.1 94 0.002 22.9 3.5 32 17-48 26-59 (101)
39 COG1596 Wza Periplasmic protei 26.7 1.4E+02 0.0031 25.9 5.1 61 18-78 93-157 (239)
40 PRK09853 putative selenate red 26.1 44 0.00094 35.6 2.1 18 135-152 327-344 (1019)
41 COG5086 Uncharacterized conser 25.9 78 0.0017 27.8 3.2 25 133-157 36-60 (218)
42 PF05046 Img2: Mitochondrial l 25.8 1.3E+02 0.0027 22.4 4.0 39 32-78 49-87 (87)
43 PF12637 TSCPD: TSCPD domain; 25.7 73 0.0016 24.0 2.8 21 166-188 6-26 (95)
44 PLN02593 adrenodoxin-like ferr 25.4 67 0.0014 25.1 2.6 24 25-48 68-91 (117)
45 cd04657 Piwi_ago-like Piwi_ago 25.3 54 0.0012 30.7 2.4 27 127-153 397-423 (426)
46 PF12167 DUF3596: Domain of un 25.2 81 0.0018 22.2 2.8 41 129-169 20-64 (64)
47 PF00403 HMA: Heavy-metal-asso 24.9 2.1E+02 0.0045 18.7 4.8 54 20-79 9-62 (62)
48 cd02826 Piwi-like Piwi-like: P 24.7 57 0.0012 30.1 2.4 26 127-152 366-391 (393)
49 TIGR03027 pepcterm_export puta 23.8 2.2E+02 0.0047 23.0 5.4 63 16-80 46-113 (165)
50 PF04972 BON: BON domain; Int 23.5 1.8E+02 0.0038 19.3 4.1 21 41-61 18-38 (64)
51 PF07293 DUF1450: Protein of u 22.6 1.8E+02 0.004 21.6 4.3 49 25-76 17-72 (78)
52 PF08401 DUF1738: Domain of un 22.3 99 0.0021 24.2 3.0 25 144-168 4-28 (125)
53 PF12963 DUF3852: Protein of u 22.3 83 0.0018 25.2 2.5 29 138-166 60-88 (111)
54 PRK13669 hypothetical protein; 21.1 2.2E+02 0.0047 21.4 4.4 49 25-76 17-72 (78)
55 PRK05588 histidinol-phosphatas 20.9 75 0.0016 27.2 2.2 29 13-45 142-185 (255)
56 PF10058 DUF2296: Predicted in 20.3 86 0.0019 21.7 2.0 17 25-41 3-22 (54)
57 PF01042 Ribonuc_L-PSP: Endori 20.3 2.2E+02 0.0049 21.5 4.6 39 35-77 9-53 (121)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=1.7e-98 Score=678.27 Aligned_cols=195 Identities=62% Similarity=0.974 Sum_probs=186.6
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (200)
..+|||||||+|||||||||||||||||+||+|||+|||||||+++||+|+|+|||+|+++||+++++|++|++|||+++
T Consensus 3 ~~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~ 82 (388)
T COG0192 3 KYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTES 82 (388)
T ss_pred ccceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCcc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||+++|.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++|++++||+|.+
T Consensus 83 ~~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l 161 (388)
T COG0192 83 DYGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGEL 161 (388)
T ss_pred ccCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999997533 345799999999999999999999999999999999999999999999
Q ss_pred CcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||+||||||+|+++ + +|+||+|||+||||+++
T Consensus 162 ~~LrpD~KsQVtv~Y~~~-~--~p~~idtIvvStQH~~~ 197 (388)
T COG0192 162 PWLRPDAKSQVTVEYEDN-G--KPVRIDTIVVSTQHDPD 197 (388)
T ss_pred cccCCCcceeEEEEEcCC-C--CceeEEEEEEEeccCcc
Confidence 999999999999999863 4 89999999999999874
No 2
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=1.9e-97 Score=676.92 Aligned_cols=200 Identities=94% Similarity=1.422 Sum_probs=188.1
Q ss_pred CCcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCC
Q 044843 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTS 80 (200)
Q Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (200)
|.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||+++||++|++|||++
T Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (386)
T PLN02243 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVS 80 (386)
T ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCC
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 044843 81 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGT 160 (200)
Q Consensus 81 ~~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~ 160 (200)
+++|||+++|.|+++|++|||||+|||+.+.++..+++||||||||||||||||||||||||+|||||++||+++||+|.
T Consensus 81 ~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~ 160 (386)
T PLN02243 81 DDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGT 160 (386)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985433223458999999999999999999999999999999999999999999
Q ss_pred CCcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 161 CPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 161 ~~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
+|||||||||||||+|+++.+.++|+||+|||+|+||+++
T Consensus 161 ~~~l~PD~KsQVtv~Y~~~~~~~~p~rv~tivvS~QH~~~ 200 (386)
T PLN02243 161 CPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDET 200 (386)
T ss_pred CCeecCCCceEEEEEeecCCCCccceeEeEEEEeeccCCC
Confidence 9999999999999999764353459999999999999874
No 3
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.7e-97 Score=656.99 Aligned_cols=197 Identities=72% Similarity=1.111 Sum_probs=192.4
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (200)
.+||||||||+||||||+|||||||||||||+|||+|+|||||..+||||+++|||||+|.|||+++||++++.|||+++
T Consensus 4 ~tFLFTSESVgEGHPDKmCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGydds 83 (383)
T KOG1506|consen 4 ETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYDDS 83 (383)
T ss_pred ceeEEeeccccCCCchHHHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
..|||++||+|+++|++|||||||||+- ++..+++||||||+|||||||||||+|||+++|||||..+|+++||+|++
T Consensus 84 skGfD~ktcnvLvaieQQSPdIAqgvH~--~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g~l 161 (383)
T KOG1506|consen 84 SKGFDYKTCNVLVAIEQQSPDIAQGVHV--DKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNGTL 161 (383)
T ss_pred ccCccccccceeeeecccCchhhhcccc--cCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccCcc
Confidence 9999999999999999999999999994 45677899999999999999999999999999999999999999999999
Q ss_pred CcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||+|||||+||.+++|++.|.||||||||+||+++
T Consensus 162 ~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~ 200 (383)
T KOG1506|consen 162 PWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSED 200 (383)
T ss_pred cccccCCcceEEEEEecCCCceeeeEEEEEEEecccCcc
Confidence 999999999999999999999999999999999999974
No 4
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=1.7e-96 Score=671.21 Aligned_cols=194 Identities=63% Similarity=1.004 Sum_probs=183.4
Q ss_pred CCcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCC
Q 044843 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTS 80 (200)
Q Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (200)
|++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+
T Consensus 1 m~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~- 79 (386)
T PRK12459 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD- 79 (386)
T ss_pred CCceeEEecCCCCCCccHHHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC-
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEEeccCChhhhhccccccc--cccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHc
Q 044843 81 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHLT--KRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKN 158 (200)
Q Consensus 81 ~~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~--~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~ 158 (200)
++|||+++|.|+++|++|||||++||+...+ +..+++||||||||||||||||||||||||+|||||++||+++||+
T Consensus 80 -~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 80 -ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKD 158 (386)
T ss_pred -CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999974322 1124689999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 159 GTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 159 g~~~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|.+|||||||||||||+|++ + +|+||+|||||+||+++
T Consensus 159 g~~~~l~PD~KsQVtv~Y~~--~--~P~rv~tivvS~QH~~~ 196 (386)
T PRK12459 159 GLLPGLLPDGKTQVTVEYED--G--RPVRVDTIVVSAQHDES 196 (386)
T ss_pred CCCCeecCCCceEEEEEeeC--C--ceeEEEEEEEeeccCCC
Confidence 99999999999999999975 3 89999999999999874
No 5
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=8.9e-96 Score=666.15 Aligned_cols=191 Identities=64% Similarity=0.997 Sum_probs=183.7
Q ss_pred cceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCCC
Q 044843 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDD 82 (200)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (200)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus 2 ~~lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 81 (384)
T PRK05250 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSE 81 (384)
T ss_pred CceEeecCCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 044843 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCP 162 (200)
Q Consensus 83 ~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~ 162 (200)
+|||+++|.|+++|++|||||+|||+.. ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus 82 ~gfd~~~~~v~~~i~~QSpdIa~gV~~~---~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~ 158 (384)
T PRK05250 82 YGFDANTCAVLVSIGEQSPDIAQGVDRD---ELDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLP 158 (384)
T ss_pred cCcCCCceEEEeecCCCChhHHhhhCcc---ccccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999852 2346899999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 163 ~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||||||||+|++ + +|+||+|||||+||+++
T Consensus 159 ~l~PD~KtQVtv~Y~~--~--~p~~i~tiviS~QH~~~ 192 (384)
T PRK05250 159 YLRPDAKSQVTVEYEN--G--KPVRIDTIVVSTQHDPD 192 (384)
T ss_pred eecCCCceEEEEEEEC--C--ceeeEEEEEEeccCCCC
Confidence 9999999999999985 3 79999999999999974
No 6
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=9.6e-96 Score=667.83 Aligned_cols=197 Identities=74% Similarity=1.128 Sum_probs=185.4
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++|||++|||++|++|||+++
T Consensus 9 ~~~lfTSESVseGHPDKicDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~~~ 88 (398)
T PTZ00104 9 GHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYDDT 88 (398)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||+++|.|+++|++|||||++||+... ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus 89 ~~gfd~~t~~v~~~i~~QSpDIa~gV~~~~--~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~~~ 166 (398)
T PTZ00104 89 EKGLDYKTCNVLVAIEQQSPDIAQGVHVGK--KEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGIL 166 (398)
T ss_pred ccCcCCCceEEEecCCCCChhHhhcccccc--ccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999998531 124589999999999999999999999999999999999999999999
Q ss_pred CcccCCCcceEEEEEecCC-CeeeeeEEeEEEEeeeeCCC
Q 044843 162 PWLRPDGKTQVTVEYYNEN-GAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KtQVtv~Y~~~~-~~~~p~rv~tiviS~QH~~~ 200 (200)
|||||||||||||+|+++. +.++|+||+|||+|+||+++
T Consensus 167 ~~L~PD~KsQVtv~Y~~~~~~~~~P~~i~tivvS~QH~~~ 206 (398)
T PTZ00104 167 PWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDEG 206 (398)
T ss_pred CeeccCCceEEEEEeccCCCCCccceeEEEEEEccccCCC
Confidence 9999999999999997531 11579999999999999874
No 7
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=9.2e-96 Score=664.39 Aligned_cols=189 Identities=63% Similarity=0.968 Sum_probs=181.7
Q ss_pred eeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCCCCC
Q 044843 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVG 84 (200)
Q Consensus 5 lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~g 84 (200)
|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++++|
T Consensus 1 lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~g 80 (377)
T TIGR01034 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 (377)
T ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 044843 85 LDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWL 164 (200)
Q Consensus 85 fd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~l 164 (200)
||+++|.|+++|++|||||+|||+++. .+++||||||||||||||||||||||||+|||+|++||+++||+|++|||
T Consensus 81 fd~~t~~v~~~i~~QSpDIa~gV~~~~---~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 157 (377)
T TIGR01034 81 FDAKTCAVLVAIGNQSPDIAQGVDKAN---PEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWL 157 (377)
T ss_pred CCCCceEEEecCCCCChHHHhccccCc---cccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCee
Confidence 999999999999999999999998431 23589999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 165 RPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 165 rPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||||||+|++ + +|+||+|||||+||+++
T Consensus 158 ~PD~KtQVtveY~~--~--~P~rv~tivvS~QH~~~ 189 (377)
T TIGR01034 158 RPDGKSQVTVQYED--N--KPVRVDTIVLSTQHDPD 189 (377)
T ss_pred cCCCceEEEEEEEC--C--ceeEEEEEEEecCCCCC
Confidence 99999999999975 3 79999999999999874
No 8
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=4.1e-54 Score=331.66 Aligned_cols=100 Identities=60% Similarity=1.042 Sum_probs=93.2
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||++++++||++|||++|++|||+++
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~ 80 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDS 80 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEG
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEeccCCh
Q 044843 82 DVGLDADHCKVLVNIEQQSP 101 (200)
Q Consensus 82 ~~gfd~~tc~v~~~i~~QS~ 101 (200)
++|||+++|+|+++|++|||
T Consensus 81 ~~gfd~~tc~V~~~i~~QSp 100 (100)
T PF00438_consen 81 EYGFDYDTCEVLVAIHEQSP 100 (100)
T ss_dssp GGTEETTTSEEEEEEEEE-H
T ss_pred cCCCCCCcceEEEeecccCc
Confidence 99999999999999999998
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=3.9e-48 Score=306.85 Aligned_cols=81 Identities=72% Similarity=1.162 Sum_probs=74.4
Q ss_pred cCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCCcceEEEEEecCCCeeeeeEEeEEEEeee
Q 044843 117 EIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQ 196 (200)
Q Consensus 117 ~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~Q 196 (200)
++|||||||||||||||||+||||||+|||+|++||+++||+|.+|||||||||||||+|+++ + +|+||+|||||+|
T Consensus 2 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~Q 78 (120)
T PF02772_consen 2 EIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVSTQ 78 (120)
T ss_dssp CCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEEE
T ss_pred CcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999654 3 8999999999999
Q ss_pred eCCC
Q 044843 197 HDET 200 (200)
Q Consensus 197 H~~~ 200 (200)
|+++
T Consensus 79 H~~~ 82 (120)
T PF02772_consen 79 HDED 82 (120)
T ss_dssp E-TT
T ss_pred CCCC
Confidence 9874
No 10
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=97.81 E-value=0.00017 Score=67.60 Aligned_cols=144 Identities=24% Similarity=0.294 Sum_probs=94.6
Q ss_pred CCCCCcchhhhhhHHHHHHH----hhc---------CCCCeEEEEEEee--------eCeEEEEEEEeeee---eccHHH
Q 044843 12 NEGHPDKLCDQVSDAVLDAC----LAQ---------DPDSKVACETCTK--------TNMVMVFGEITTKA---NVDYEK 67 (200)
Q Consensus 12 ~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~V~i~GEitt~a---~vd~~~ 67 (200)
+-||||-|||-|++++=-++ |++ |+---||-++.-+ .=.|+++|..|+.. .+.+.+
T Consensus 26 GiGHPDtIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iPv~~ 105 (396)
T PF01941_consen 26 GIGHPDTICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIPVDE 105 (396)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeeccHHH
Confidence 67999999999999875443 322 6666677666443 22488999988864 678888
Q ss_pred HHHHHHHhcCCCC-CCCCCCCC-ceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHH
Q 044843 68 IVRDTCRSIGFTS-DDVGLDAD-HCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLA 145 (200)
Q Consensus 68 ivR~~i~~IGY~~-~~~gfd~~-tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lA 145 (200)
|+.++.|+ |=. .--.||.+ ...|...+.+-|+|+..-..... .-.+|-|-.+..|||- |+ -.
T Consensus 106 Ia~~aak~--~l~~~l~~lD~e~hv~i~~~i~~GS~dL~dvf~r~~----~vp~ANDTS~gVGyAP--------lS--~~ 169 (396)
T PF01941_consen 106 IAIEAAKE--WLRENLRFLDPERHVIIDCRIGPGSPDLVDVFERGK----KVPLANDTSFGVGYAP--------LS--ET 169 (396)
T ss_pred HHHHHHHH--HHHHhcccCCccccEEEEEeeCCCChHHHHHhcccc----cccccCCccceeccCC--------cc--HH
Confidence 86666554 211 12245654 36788889999999987665421 1358999999999973 32 22
Q ss_pred HHHHHHHHHHHHc----CCCCcccCCCcce
Q 044843 146 TKLGAKLTEVRKN----GTCPWLRPDGKTQ 171 (200)
Q Consensus 146 h~L~~rl~~~Rk~----g~~~~lrPD~KtQ 171 (200)
-+|+..++..-.+ ..+||.+.|-|.-
T Consensus 170 E~~Vl~~Er~lns~~fk~~~p~~GeDiKVM 199 (396)
T PF01941_consen 170 EKLVLETERYLNSPEFKKKFPEVGEDIKVM 199 (396)
T ss_pred HHHHHHHHHHhccccccccCCCcCCCeEEE
Confidence 3333333332221 3589999999873
No 11
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=97.59 E-value=0.00066 Score=63.86 Aligned_cols=144 Identities=23% Similarity=0.310 Sum_probs=91.6
Q ss_pred CCCCCcchhhhhhHHHHHH----Hhhc---------CCCCeEEEEEEee--------eCeEEEEEEEeeeee---ccHHH
Q 044843 12 NEGHPDKLCDQVSDAVLDA----CLAQ---------DPDSKVACETCTK--------TNMVMVFGEITTKAN---VDYEK 67 (200)
Q Consensus 12 ~eGHPDKicDqISDaILDa----~L~~---------Dp~arVA~E~~v~--------~~~V~i~GEitt~a~---vd~~~ 67 (200)
+-||||-|||-|++++=-+ ||++ |+-.-||-+..-+ -=.++++|..|+... +.+.+
T Consensus 26 GiGHPDticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv~~ 105 (399)
T PRK04439 26 GIGHPDTICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPVGE 105 (399)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecHHH
Confidence 6799999999999987544 3332 6766677666533 223578999887643 78888
Q ss_pred HHHHHHHhcCCCCCCCCCCCCc-eEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHH
Q 044843 68 IVRDTCRSIGFTSDDVGLDADH-CKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLAT 146 (200)
Q Consensus 68 ivR~~i~~IGY~~~~~gfd~~t-c~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh 146 (200)
|+.++.|+- ....--.||.+. ..|...+.+-|+|+..-..+. ..--+|-|-....||| ||+- --
T Consensus 106 Ia~~Aak~~-L~~~l~~lD~e~hv~i~~~i~~GS~dL~~vF~r~----~~vp~ANDTS~gVGyA--------PlS~--~E 170 (399)
T PRK04439 106 IAIEAAKEY-LRENLRNLDPERHVIIDVRLGPGSTDLVDVFERE----SIVPLANDTSFGVGYA--------PLSE--TE 170 (399)
T ss_pred HHHHHHHHH-HHHhCccCCccccEEEEEeeCCCcHHHHHHhCCC----CCccccccccceeecC--------CCCH--HH
Confidence 775555541 011112355543 577888899999998655421 1134899999999997 3322 23
Q ss_pred HHHHHHHHHHHc----CCCCcccCCCcc
Q 044843 147 KLGAKLTEVRKN----GTCPWLRPDGKT 170 (200)
Q Consensus 147 ~L~~rl~~~Rk~----g~~~~lrPD~Kt 170 (200)
+|+..++..-.+ ..+||.+.|-|.
T Consensus 171 ~~Vl~~E~~lns~~~k~~~P~~GeDiKV 198 (399)
T PRK04439 171 RLVLETERYLNSEEFKKRFPEVGEDIKV 198 (399)
T ss_pred HHHHHHHHHhcCcchhhcCCCcCCCeEE
Confidence 333333333222 358999999987
No 12
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=95.98 E-value=0.057 Score=50.70 Aligned_cols=146 Identities=23% Similarity=0.287 Sum_probs=83.4
Q ss_pred CCCCCCcchhhhhhHHHHHHH----hhc---------CCCCeEEEEE--------EeeeCeEEEEEEEeee---eeccHH
Q 044843 11 VNEGHPDKLCDQVSDAVLDAC----LAQ---------DPDSKVACET--------CTKTNMVMVFGEITTK---ANVDYE 66 (200)
Q Consensus 11 V~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~--------~v~~~~V~i~GEitt~---a~vd~~ 66 (200)
=+-||||-|||-|+.+|=-++ |+. |.---||-+. ++..=.+++.|.-|.. ..+.+.
T Consensus 25 KGlGHPDsiaDgiAE~vsr~Ls~~YlerfG~IlHHN~Dk~~ivgG~s~p~FGGGevi~PIyIll~GRAt~~~~g~~ip~~ 104 (400)
T COG1812 25 KGLGHPDSIADGIAEAVSRALSKYYLERFGVILHHNTDKVQIVGGQSAPKFGGGEVIEPIYILLSGRATKEVEGVEIPVG 104 (400)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHhCceeccccceeEEEcccccccCCCcceeeeEEEEEecceeeeecCeeccch
Confidence 367999999999988875543 222 3322333322 2222346777876643 346666
Q ss_pred HHHHHHHHhcCCCC-CCCCCCCCce-EEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHH
Q 044843 67 KIVRDTCRSIGFTS-DDVGLDADHC-KVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVL 144 (200)
Q Consensus 67 ~ivR~~i~~IGY~~-~~~gfd~~tc-~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~l 144 (200)
.|+-++-|+ |=. .---+|.+++ -+-..|.+-|.|+..-.....+ .--.|-|-..+.||| ||+.
T Consensus 105 ~ia~~AAk~--yLr~~~r~LD~E~~Viid~rig~GS~dL~dvf~~~~~---~VplANDTSfgVG~A--------PLs~-- 169 (400)
T COG1812 105 SIAIKAAKE--YLRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAKE---EVPLANDTSFGVGFA--------PLSE-- 169 (400)
T ss_pred HHHHHHHHH--HHHhhcccCCccccEEEEeeccCCchhHHHHHhhccc---CCcccccccceeccC--------CCcH--
Confidence 665444443 211 1123566644 5566788889998754443211 225799999999998 3432
Q ss_pred HHHHHHH----HHHHHHcCCCCcccCCCcce
Q 044843 145 ATKLGAK----LTEVRKNGTCPWLRPDGKTQ 171 (200)
Q Consensus 145 Ah~L~~r----l~~~Rk~g~~~~lrPD~KtQ 171 (200)
..+|+.. |...--...+|..+.|-|.-
T Consensus 170 tErlV~etEr~lns~~~k~~~P~vGeDIKVM 200 (400)
T COG1812 170 TERLVLETERYLNSPEFKKKLPAVGEDIKVM 200 (400)
T ss_pred HHHHHHHHHHHhcChhhcccCCCcCCceEEE
Confidence 2233322 22212224689999999874
No 13
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=68.08 E-value=1.4 Score=30.85 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=26.5
Q ss_pred cCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHH
Q 044843 98 QQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSH 142 (200)
Q Consensus 98 ~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i 142 (200)
+-++|+-.-||.- + ----|+++|||.+-||-++=|-++|
T Consensus 11 ~~~~dlYKvVDfL-N-----ktLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDFL-N-----KTLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHHH-h-----hhhhhccEEEEEeecCcCCEEEEEE
Confidence 3467777777631 1 1345789999999987777775554
No 14
>PRK11023 outer membrane lipoprotein; Provisional
Probab=66.40 E-value=11 Score=31.81 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=38.0
Q ss_pred cchhhh-hhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcC
Q 044843 17 DKLCDQ-VSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIG 77 (200)
Q Consensus 17 DKicDq-ISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IG 77 (200)
+...|. |+..|-.+++..+.-.-..+.+.+.+|.|++.|+++. ..- +-+.++.+.+.
T Consensus 121 ~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~-~e~---~~a~~iA~~v~ 178 (191)
T PRK11023 121 TASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ-REA---KAAADIASRVS 178 (191)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH-HHH---HHHHHHHhcCC
Confidence 444554 7778888888776656666777778999999999863 322 23445555543
No 15
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=60.67 E-value=16 Score=29.57 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeee
Q 044843 20 CDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60 (200)
Q Consensus 20 cDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~ 60 (200)
-.+|+|+|+.++-++...+.- +.+-+.+|.|.+.|.+.+.
T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 24 NEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred hHHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 489999999998888765544 6778889999999988874
No 16
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=54.25 E-value=16 Score=31.33 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=33.0
Q ss_pred hcCCCCeEEEEEEeeeCe-------EEEEEEEeeeeeccHHHHHHHHHHh
Q 044843 33 AQDPDSKVACETCTKTNM-------VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 33 ~~Dp~arVA~E~~v~~~~-------V~i~GEitt~a~vd~~~ivR~~i~~ 75 (200)
--||+|+||+=||.+... .-|+|-..|. ++=+++++++++.+
T Consensus 17 vGdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 17 VGDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred ECCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 359999999999988655 4566665554 77899999999865
No 17
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=53.25 E-value=31 Score=24.47 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=25.7
Q ss_pred eeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCCcceEEEEEec
Q 044843 124 GHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYN 178 (200)
Q Consensus 124 GimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KtQVtv~Y~~ 178 (200)
|..+|+-.| | .+|++.|.++|++|.++ .+|++.|+.
T Consensus 5 G~~iG~~~~------p------~~l~~~lr~~RR~g~i~-------~~vsi~~~~ 40 (63)
T PF04566_consen 5 GVWIGIHSD------P------EELVKTLRNLRRSGKIS-------KEVSIVYDI 40 (63)
T ss_dssp TEEEEEESS------H------HHHHHHHHHHHHTTSS--------TTSEEEEET
T ss_pred CEEEEEEcC------H------HHHHHHHHHHhhccCCc-------ceeEEEEec
Confidence 667777443 2 47889999999999877 357887764
No 18
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=49.11 E-value=14 Score=32.22 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 044843 134 TPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 134 T~e~MPl~i~lAh~L~~rl~~~ 155 (200)
.+--+|.|+.+||+|++|..+.
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4566999999999999998654
No 19
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=46.53 E-value=67 Score=26.38 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=49.2
Q ss_pred EEEEEEEeeeeeccHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEe---ccCChhhhhccccccccccccCCCCcce---
Q 044843 51 VMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNI---EQQSPDIAQGVHGHLTKRAEEIGAGDQG--- 124 (200)
Q Consensus 51 V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~tc~v~~~i---~~QS~dIa~gV~~~~~~~~~~~GAGDQG--- 124 (200)
|+..|.+|-.-+---+.++|+.|++.++.+....-+.+|...++.- .-.|||=.+-+.. ....+|--==||
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK~vl~~---k~f~dISsC~qg~~~ 82 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTKSVVLE---KNFKDISSCSQGIKH 82 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcceEEEe---cCccccchhhcCCCC
Confidence 6678888765444568899999999999887777777774443321 1235554443331 111111111111
Q ss_pred -eeeeeeCCCCC
Q 044843 125 -HMFGYATDETP 135 (200)
Q Consensus 125 -imfGYA~dET~ 135 (200)
=-|||-|.||.
T Consensus 83 ~dhFgFIcrEs~ 94 (129)
T cd01269 83 VDHFGFICRESP 94 (129)
T ss_pred cceEEEEeccCC
Confidence 14999999997
No 20
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.85 E-value=13 Score=30.98 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.2
Q ss_pred eeCCCCCCCCCcHHHHHHHHHHH
Q 044843 129 YATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 129 YA~dET~e~MPl~i~lAh~L~~r 151 (200)
.-|-|.|-..|+.|+|+|||-+|
T Consensus 9 lGCPeiP~qissaiYls~klkkk 31 (148)
T COG4081 9 LGCPEIPPQISSAIYLSHKLKKK 31 (148)
T ss_pred ecCCCCCccchHHHHHHHHhhcc
Confidence 45999999999999999999988
No 21
>PRK14053 methyltransferase; Provisional
Probab=42.00 E-value=35 Score=29.73 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=34.1
Q ss_pred hhcCCCCeEEEEEEeeeCe----EEEEEEEeeeeeccHHHHHHHHHHh
Q 044843 32 LAQDPDSKVACETCTKTNM----VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~----V~i~GEitt~a~vd~~~ivR~~i~~ 75 (200)
.--||+|+||+=||.++-. .-|+|-..|. ++=+++++++++.+
T Consensus 16 ~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 16 TVGNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred EeCCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 3458999999999998644 5667766665 78899999999765
No 22
>PRK04964 hypothetical protein; Provisional
Probab=41.01 E-value=25 Score=25.68 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=18.5
Q ss_pred cccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHH
Q 044843 115 AEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 115 ~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~r 151 (200)
+.+||.|||| |+|-+|..|-|-...
T Consensus 12 ya~IgSGd~g------------YiP~Ai~ca~k~L~~ 36 (66)
T PRK04964 12 YAEIGSGDLG------------YVPDALGCVLKALNE 36 (66)
T ss_pred HHHhcCCccc------------cCcHHHHHHHHHHHH
Confidence 3479999998 489989887664433
No 23
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=39.48 E-value=28 Score=25.43 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=19.0
Q ss_pred cccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHH
Q 044843 115 AEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKL 152 (200)
Q Consensus 115 ~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl 152 (200)
+.+||.|||| |+|-+|..|-|-...+
T Consensus 12 ya~IgSGd~g------------YiP~Ai~calk~Ln~i 37 (66)
T PF06786_consen 12 YAQIGSGDQG------------YIPDAIGCALKTLNDI 37 (66)
T ss_pred HHHhcCCccc------------cCcHHHHHHHHHHHHH
Confidence 3479999998 5899998876644433
No 24
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=39.47 E-value=34 Score=30.44 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=33.2
Q ss_pred hhcCCCCeEEEEEEeeeCe--------EEEEEEEeeeeeccHHHHHHHHHHh
Q 044843 32 LAQDPDSKVACETCTKTNM--------VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~--------V~i~GEitt~a~vd~~~ivR~~i~~ 75 (200)
.--||+|.||+=||.++.. .-|+|-..|. ++=++++++++|.+
T Consensus 19 ~vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 19 VVGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred EeCCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 3459999999999998765 3456655554 77899999999765
No 25
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=39.19 E-value=13 Score=24.75 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=16.9
Q ss_pred cCCCCcccCCCcceEEEEEec
Q 044843 158 NGTCPWLRPDGKTQVTVEYYN 178 (200)
Q Consensus 158 ~g~~~~lrPD~KtQVtv~Y~~ 178 (200)
.|...|+.|||+ +++|.|.-
T Consensus 28 ~GsY~y~~pdG~-~~~V~Y~A 47 (52)
T PF00379_consen 28 RGSYSYIDPDGQ-TRTVTYVA 47 (52)
T ss_pred EEEEEEECCCCC-EEEEEEEC
Confidence 488999999998 57899964
No 26
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=38.25 E-value=1.3e+02 Score=28.92 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=59.8
Q ss_pred CeEEEEEEeeeCeEE--EEEEEeeeeeccHH---HHHHHHHHhcCCCCCCC--CCCCCceEEEEEeccCChhhhhccccc
Q 044843 38 SKVACETCTKTNMVM--VFGEITTKANVDYE---KIVRDTCRSIGFTSDDV--GLDADHCKVLVNIEQQSPDIAQGVHGH 110 (200)
Q Consensus 38 arVA~E~~v~~~~V~--i~GEitt~a~vd~~---~ivR~~i~~IGY~~~~~--gfd~~tc~v~~~i~~QS~dIa~gV~~~ 110 (200)
..+-|++..++|.++ +-..-..+..++.+ +++++.|+++||.+-.. --.++...+++.+..|. ||.--
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~iY 336 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRVY 336 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEEc
Confidence 458899999999766 33332334566654 47899999999976321 11223445556666664 33210
Q ss_pred cccccccC-CCCcceeeeee-----eCCCCCCCCCcH
Q 044843 111 LTKRAEEI-GAGDQGHMFGY-----ATDETPELMPLS 141 (200)
Q Consensus 111 ~~~~~~~~-GAGDQGimfGY-----A~dET~e~MPl~ 141 (200)
.+.-++ -|-|.|=+.|| -+++++.=+|-|
T Consensus 337 --pd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 337 --PDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred --CCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 001122 38899999999 777776656766
No 27
>PRK09819 alpha-mannosidase; Provisional
Probab=37.84 E-value=11 Score=38.68 Aligned_cols=62 Identities=24% Similarity=0.241 Sum_probs=45.7
Q ss_pred CCCCcchh----hhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEE-Eeee-eeccHHHHHHHHHHhc
Q 044843 13 EGHPDKLC----DQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGE-ITTK-ANVDYEKIVRDTCRSI 76 (200)
Q Consensus 13 eGHPDKic----DqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GE-itt~-a~vd~~~ivR~~i~~I 76 (200)
+=+||-.. -|. ++|+.+|+..|.-+-.+.-+|+.|.++++|- +-+. .-+..+.++|+.+--.
T Consensus 41 e~~p~~~f~~~d~q~--~~l~~~~~~~Pe~~~~ik~lV~~Grl~~G~W~v~~D~~l~sgEsliRqll~G~ 108 (875)
T PRK09819 41 EQDNDYKYYVLDGQT--SLLEDYLAVKPEDKERVKKLVQAGKLIIGPWYTQTDQLVVSGESIVRNLLYGI 108 (875)
T ss_pred HhCCCcceEEEchhH--HHHHHHHHhChHHHHHHHHHHHcCCEeECcEEeecccccCCHHHHHHHHHHHH
Confidence 34676433 254 6899999999988877888999999988887 3333 4568999999986543
No 28
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=35.56 E-value=6.3 Score=34.01 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCCeEEEEEEeeeCeEEE-EEEEee--eeeccHHHHHHHHHH
Q 044843 26 AVLDACLAQDPDSKVACETCTKTNMVMV-FGEITT--KANVDYEKIVRDTCR 74 (200)
Q Consensus 26 aILDa~L~~Dp~arVA~E~~v~~~~V~i-~GEitt--~a~vd~~~ivR~~i~ 74 (200)
++++.+++..|..+-...-+|+.|.+.+ +|--+. .+-++.+.++|+.+.
T Consensus 50 ~~~~~~~~~~p~~~~~~~~lv~~Gri~~vgg~~~~~D~~l~~~Eslirql~~ 101 (275)
T PF01074_consen 50 AYLEDYLEDAPEEFKRIKKLVKEGRIEIVGGWYVQPDENLPSGESLIRQLLY 101 (275)
T ss_dssp HHHHHHHHCSGHHHHHHHHHHHTTSEEESSSBSS-B-SSSS-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhceeEEeCceeeeccccCCCHHHHHHHHhh
Confidence 4566666666655555566788999886 554322 356788999887654
No 29
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=35.34 E-value=32 Score=31.75 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=54.8
Q ss_pred CcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCCCCCCCCCceEEEEE
Q 044843 16 PDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVN 95 (200)
Q Consensus 16 PDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~tc~v~~~ 95 (200)
-|++.|-+.++||-+++.+..-..|.- +.-.+-++-.|+.|..--.++-.-||.++++.||+-+-- ..++..+...
T Consensus 110 tdd~~~~~~~til~ay~~~~~~d~v~~--v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~--T~dsw~~~~~ 185 (305)
T COG5309 110 TDDIHDAVEKTILSAYLPYNGWDDVTT--VTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVT--TVDSWNVVIN 185 (305)
T ss_pred ccchhhhHHHHHHHHHhccCCCCceEE--EEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCcee--ecccceeeeC
Confidence 378888898899999998876664432 112333444556665545677777999999999987521 1222233322
Q ss_pred eccCChhhhhccc
Q 044843 96 IEQQSPDIAQGVH 108 (200)
Q Consensus 96 i~~QS~dIa~gV~ 108 (200)
-|++.+..|
T Consensus 186 ----np~l~~~SD 194 (305)
T COG5309 186 ----NPELCQASD 194 (305)
T ss_pred ----ChHHhhhhh
Confidence 688777665
No 30
>PRK11023 outer membrane lipoprotein; Provisional
Probab=32.89 E-value=1.4e+02 Score=25.09 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.8
Q ss_pred chhhh-hhHHHHHHHhhcCCCCe--EEEEEEeeeCeEEEEEEEeeee
Q 044843 18 KLCDQ-VSDAVLDACLAQDPDSK--VACETCTKTNMVMVFGEITTKA 61 (200)
Q Consensus 18 KicDq-ISDaILDa~L~~Dp~ar--VA~E~~v~~~~V~i~GEitt~a 61 (200)
++-|+ |+-.|..+ |.+||..+ -.+.+-+.+|.|.+.|++.+..
T Consensus 44 ~~dD~~i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~~ 89 (191)
T PRK11023 44 QVDDGTLELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNAE 89 (191)
T ss_pred eehhHHHHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCHH
Confidence 44444 44444454 45577654 4688889999999999998853
No 31
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=32.86 E-value=36 Score=31.85 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=22.2
Q ss_pred eeeeeCCCCCCCCCcHHHHHHHHHHHHH
Q 044843 126 MFGYATDETPELMPLSHVLATKLGAKLT 153 (200)
Q Consensus 126 mfGYA~dET~e~MPl~i~lAh~L~~rl~ 153 (200)
-|-|+.--.+--+|.|+.+||+|++++.
T Consensus 420 c~~y~~~~~~vs~P~p~~yA~~~a~~~g 447 (448)
T cd04658 420 CHLYYNWSGSIRVPAPCQYAHKLAFLVG 447 (448)
T ss_pred hhcccCCCCCCccCHHHHHHHHHHHHhc
Confidence 3566655567779999999999999873
No 32
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=32.66 E-value=51 Score=22.09 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCCcccCCCcceEEEE
Q 044843 149 GAKLTEVRKNGTCPWLRPDGKTQVTVE 175 (200)
Q Consensus 149 ~~rl~~~Rk~g~~~~lrPD~KtQVtv~ 175 (200)
.+...-||++|..-+.+|||+--|+-.
T Consensus 18 ~~Q~~~L~~~Gi~~~~~~~G~p~V~r~ 44 (47)
T PF13986_consen 18 SKQIRWLRRNGIPFVVRADGRPIVTRS 44 (47)
T ss_pred HHHHHHHHHCCCeeEECCCCCEEeeHH
Confidence 456788999998888889999887643
No 33
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=32.05 E-value=32 Score=36.48 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=15.7
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 044843 135 PELMPLSHVLATKLGAKL 152 (200)
Q Consensus 135 ~e~MPl~i~lAh~L~~rl 152 (200)
..|.||+|.||.+|.+..
T Consensus 325 ~~l~~~~~~~~~~l~~~f 342 (1012)
T TIGR03315 325 RALFPLSINLAAKLSREF 342 (1012)
T ss_pred CccccchHHHHHhhHHhh
Confidence 457899999999999887
No 34
>PRK10568 periplasmic protein; Provisional
Probab=31.82 E-value=1.3e+02 Score=25.55 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=29.6
Q ss_pred hhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhc
Q 044843 23 VSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSI 76 (200)
Q Consensus 23 ISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~I 76 (200)
|...|-.+++..+....-.+.+-+.+|.|.+.|++.+.+. ...+.++.+.+
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~~~---~~~a~~ia~~v 111 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQAQ---AEEAVKVAKGV 111 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCHHH---HHHHHHHHHhC
Confidence 4444445544432222335677778999999999987533 22344444444
No 35
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.48 E-value=15 Score=30.49 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.8
Q ss_pred CCCCCCCCCcHHHHHHHHHH
Q 044843 131 TDETPELMPLSHVLATKLGA 150 (200)
Q Consensus 131 ~dET~e~MPl~i~lAh~L~~ 150 (200)
|-|.|-..|+.++|+|+|-+
T Consensus 6 CPe~Pvq~p~alYl~~~Lk~ 25 (139)
T PF09001_consen 6 CPEVPVQTPSALYLSYKLKK 25 (139)
T ss_dssp -S-STTHHHHHHHHHHHHHC
T ss_pred CCCCcchhHHHHHHHHHHHh
Confidence 88999999999999999866
No 36
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=30.08 E-value=60 Score=29.14 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=32.3
Q ss_pred hhcCCCCeEEEEEEeeeCe--------EEEEEEEeeeeeccHHHHHHHHHHh
Q 044843 32 LAQDPDSKVACETCTKTNM--------VMVFGEITTKANVDYEKIVRDTCRS 75 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~--------V~i~GEitt~a~vd~~~ivR~~i~~ 75 (200)
.--||+|.||+=||.++.. .-|+|-..|. ++=+++++++++.+
T Consensus 19 ~vGd~~SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TE-NlGIEKvIaNvisN 69 (238)
T TIGR01111 19 VVGDPESPVLVVTLGSHIEEQIILDAGAAIAGPCKTE-NLGIEKVVANIISN 69 (238)
T ss_pred EecCCCCceEEEEccccccccchhhcCceeecccccc-ccCHHHHHHHHhcC
Confidence 4458999999999988754 3345655454 67899999999764
No 37
>PHA01812 hypothetical protein
Probab=28.02 E-value=70 Score=25.20 Aligned_cols=54 Identities=30% Similarity=0.422 Sum_probs=33.8
Q ss_pred CCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCCcceEEE-EEecCCC
Q 044843 119 GAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTV-EYYNENG 181 (200)
Q Consensus 119 GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KtQVtv-~Y~~~~~ 181 (200)
.-|.||++. ||.-. ..|-+.|..-+.++|.+..+--+---|..|.|+ +|++..|
T Consensus 55 kfgeqgviv---tddyn------vnlpnhltelikemradedvvdiinagevqftiyeyenkkg 109 (122)
T PHA01812 55 KFGEQGVIV---TDDYN------VNLPNHLTELIKEMRADEDVVDIINAGEVQFTIYEYENKKG 109 (122)
T ss_pred cccccceEE---ecCcc------cCCchHHHHHHHHHhccchHhhhcccceEEEEEEeeeccCC
Confidence 468899876 33222 223345666777788766555455578899987 6765433
No 38
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=27.10 E-value=94 Score=22.89 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=24.9
Q ss_pred cchhhhhhHHHHHHHhhc--CCCCeEEEEEEeee
Q 044843 17 DKLCDQVSDAVLDACLAQ--DPDSKVACETCTKT 48 (200)
Q Consensus 17 DKicDqISDaILDa~L~~--Dp~arVA~E~~v~~ 48 (200)
+..+..|++.|++++-+. .|.-|..|-+++..
T Consensus 26 ~~~~~~I~~~i~~~lk~~~~~~ryK~iv~~~I~q 59 (101)
T PF03645_consen 26 QQWSKEISDEILERLKKLGYSKRYKFIVQVTIGQ 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHCC--T-SCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEe
Confidence 356888999999998888 68888888877653
No 39
>COG1596 Wza Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]
Probab=26.66 E-value=1.4e+02 Score=25.90 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=39.2
Q ss_pred chhhhhhHHHHHHHhhcCCCCeEEEEEEeeeC-eEEEEEEEeeeeeccHH---HHHHHHHHhcCC
Q 044843 18 KLCDQVSDAVLDACLAQDPDSKVACETCTKTN-MVMVFGEITTKANVDYE---KIVRDTCRSIGF 78 (200)
Q Consensus 18 KicDqISDaILDa~L~~Dp~arVA~E~~v~~~-~V~i~GEitt~a~vd~~---~ivR~~i~~IGY 78 (200)
|-.-|+...|.+.+-+.=.+-.|.+|+.-... .|+|.||+.+.+.+.+. ..+.++|...|-
T Consensus 93 ~T~~el~~~I~~~L~~~~~~P~v~V~v~~~rp~~v~V~GeV~~PG~y~~~~~~~tv~~ai~~AGG 157 (239)
T COG1596 93 KTLEELQSEIADRLAGYLVNPQVSVEVAQYRPQKVFVSGEVKTPGQYPLTPRGLTVLDAIALAGG 157 (239)
T ss_pred CCHHHHHHHHHHHHHhhccCCCeEEEEcccCCcEEEEeeecCCCceEEecCCccHHHHHHHHcCC
Confidence 44445555665555444333456677665544 59999999987666553 478888888764
No 40
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=26.12 E-value=44 Score=35.58 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=15.8
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 044843 135 PELMPLSHVLATKLGAKL 152 (200)
Q Consensus 135 ~e~MPl~i~lAh~L~~rl 152 (200)
..|.||+|.||.+|.+..
T Consensus 327 ~~l~pl~i~~a~~l~~~f 344 (1019)
T PRK09853 327 RALFPLSINLAAKLSREF 344 (1019)
T ss_pred CcccceeHHHHHhhHHhh
Confidence 457899999999999887
No 41
>COG5086 Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=78 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHH
Q 044843 133 ETPELMPLSHVLATKLGAKLTEVRK 157 (200)
Q Consensus 133 ET~e~MPl~i~lAh~L~~rl~~~Rk 157 (200)
-||+|+|.|..|-.++..|+++-|.
T Consensus 36 ~tp~LLPya~~li~r~LdrIs~q~e 60 (218)
T COG5086 36 STPRLLPYALHLIDRFLDRISEQTE 60 (218)
T ss_pred cCccccCcHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999887765
No 42
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=25.81 E-value=1.3e+02 Score=22.45 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=26.9
Q ss_pred hhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCC
Q 044843 32 LAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGF 78 (200)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY 78 (200)
|...+..+..+.+--.+|.|.|-| |+.+-|++.|.+.||
T Consensus 49 l~~~~~~~~~~~V~~~~g~i~IkG--------~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 49 LGEKPKKKIDVRVNELTGHIEIKG--------DHVEEVKKWLLEKGF 87 (87)
T ss_pred hhhhcCCCcceEEeecCCEEEEcC--------ccHHHHHHHHHHCcC
Confidence 443333456677777888888877 355668888888776
No 43
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=25.69 E-value=73 Score=23.99 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=16.5
Q ss_pred CCCcceEEEEEecCCCeeeeeEE
Q 044843 166 PDGKTQVTVEYYNENGAMVPVRV 188 (200)
Q Consensus 166 PD~KtQVtv~Y~~~~~~~~p~rv 188 (200)
++||..|||.|++++| +|..|
T Consensus 6 ~~g~~yvtv~~d~d~g--~p~Ev 26 (95)
T PF12637_consen 6 GCGKLYVTVNFDEDNG--RPFEV 26 (95)
T ss_pred cccceEEEEEeeCCCC--cceEE
Confidence 7899999999986546 66654
No 44
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=25.39 E-value=67 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCCCeEEEEEEeee
Q 044843 25 DAVLDACLAQDPDSKVACETCTKT 48 (200)
Q Consensus 25 DaILDa~L~~Dp~arVA~E~~v~~ 48 (200)
..+|+.....++++|.||.+.++.
T Consensus 68 ~~~L~~~~~~~~~sRLaCQ~~v~~ 91 (117)
T PLN02593 68 NDMLDLAFGLTETSRLGCQVIAKP 91 (117)
T ss_pred HHHHhcccCCCCCeEecceeEeec
Confidence 467775566789999999999984
No 45
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=25.30 E-value=54 Score=30.73 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.2
Q ss_pred eeeeCCCCCCCCCcHHHHHHHHHHHHH
Q 044843 127 FGYATDETPELMPLSHVLATKLGAKLT 153 (200)
Q Consensus 127 fGYA~dET~e~MPl~i~lAh~L~~rl~ 153 (200)
|-|+---.+--+|.|+++||+|+.|-.
T Consensus 397 ~~y~~~~~~vsip~p~~yA~~la~r~r 423 (426)
T cd04657 397 YTYARCTRSVSIPPPAYYAHLAAARAR 423 (426)
T ss_pred hcccccCCCcccchHHHHHHHHHHHHh
Confidence 345444455568999999999999864
No 46
>PF12167 DUF3596: Domain of unknown function (DUF3596); InterPro: IPR022000 This N-terminal domain is found in Bacteriophage P27p02, it is functionally uncharacterised, though it is considered to be an integrase. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. This domain is found in related proteins in other bacteriophage, and prophage regions of bacterial genomes. The domain is approximately 90 amino acids in length and is found is associated with the C-terminal domain characterised by PF00589 from PFAM.
Probab=25.18 E-value=81 Score=22.20 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=28.6
Q ss_pred eeCCCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCCccc--CCCc
Q 044843 129 YATDETPELM--PLSHVLATKLGAKLTEVRKNGTCPWLR--PDGK 169 (200)
Q Consensus 129 YA~dET~e~M--Pl~i~lAh~L~~rl~~~Rk~g~~~~lr--PD~K 169 (200)
=-|.|+-.|- |..+-.|.++..++..-.+.|++.|.. |++|
T Consensus 20 ~R~re~l~l~dT~~N~k~a~~~~~~I~~~I~~G~Fdy~~~FP~S~ 64 (64)
T PF12167_consen 20 KRCRESLGLPDTPANRKKAERLRAEIEAEIALGTFDYAKYFPDSK 64 (64)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHhCcCCC
Confidence 3455553332 355678888999998888899998875 6654
No 47
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.86 E-value=2.1e+02 Score=18.74 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCC
Q 044843 20 CDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFT 79 (200)
Q Consensus 20 cDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~ 79 (200)
|.--+..|-.++.+. |-. -.+++-..++.+.|.+. ...+++++ +.+.|+++||+
T Consensus 9 C~~C~~~v~~~l~~~-~GV-~~v~vd~~~~~v~v~~~---~~~~~~~~-i~~~i~~~Gy~ 62 (62)
T PF00403_consen 9 CEGCAKKVEKALSKL-PGV-KSVKVDLETKTVTVTYD---PDKTSIEK-IIEAIEKAGYE 62 (62)
T ss_dssp SHHHHHHHHHHHHTS-TTE-EEEEEETTTTEEEEEES---TTTSCHHH-HHHHHHHTTSE
T ss_pred cHHHHHHHHHHHhcC-CCC-cEEEEECCCCEEEEEEe---cCCCCHHH-HHHHHHHhCcC
Confidence 444445555555555 332 35677778888888652 22366666 77888999994
No 48
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=24.66 E-value=57 Score=30.11 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=19.9
Q ss_pred eeeeCCCCCCCCCcHHHHHHHHHHHH
Q 044843 127 FGYATDETPELMPLSHVLATKLGAKL 152 (200)
Q Consensus 127 fGYA~dET~e~MPl~i~lAh~L~~rl 152 (200)
|-|+---.+--+|.|+.+||++++|-
T Consensus 366 ~~y~~~~~~vslP~p~~yA~~~a~r~ 391 (393)
T cd02826 366 LTHQNVYSPISLPAPLYYAHKLAKRG 391 (393)
T ss_pred hcccccCCCcccChHHHHHHHHHHhh
Confidence 34554445667899999999999985
No 49
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=23.76 E-value=2.2e+02 Score=22.99 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=37.4
Q ss_pred CcchhhhhhHHHHHHHhhcCCCCeEEEEEEee--eCeEEEEEEEeeeeeccHHH--HHHHHHHhcC-CCC
Q 044843 16 PDKLCDQVSDAVLDACLAQDPDSKVACETCTK--TNMVMVFGEITTKANVDYEK--IVRDTCRSIG-FTS 80 (200)
Q Consensus 16 PDKicDqISDaILDa~L~~Dp~arVA~E~~v~--~~~V~i~GEitt~a~vd~~~--ivR~~i~~IG-Y~~ 80 (200)
|+-+..+|.+++- .++ .+|...|-+.-++. ...|.|.||+.....+.+.. -+.++|...| ++.
T Consensus 46 ~~e~~~~I~~~l~-~~~-~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~AGG~~~ 113 (165)
T TIGR03027 46 PTQLARDIEEKLA-KYV-RNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAVGGLTD 113 (165)
T ss_pred HHHHHHHHHHHHH-Hhc-cCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHcCCCCc
Confidence 3344555555542 233 46766666665553 57899999998765544432 3566666664 443
No 50
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=23.48 E-value=1.8e+02 Score=19.27 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.1
Q ss_pred EEEEEeeeCeEEEEEEEeeee
Q 044843 41 ACETCTKTNMVMVFGEITTKA 61 (200)
Q Consensus 41 A~E~~v~~~~V~i~GEitt~a 61 (200)
-+++.+.+|.|+|.|++.+..
T Consensus 18 ~i~v~v~~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 18 NISVSVENGVVTLSGEVPSQE 38 (64)
T ss_dssp TEEEEEECTEEEEEEEESSCH
T ss_pred eEEEEEECCEEEEEeeCcHHH
Confidence 366777899999999997754
No 51
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=22.58 E-value=1.8e+02 Score=21.60 Aligned_cols=49 Identities=33% Similarity=0.584 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCCeEE-------EEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhc
Q 044843 25 DAVLDACLAQDPDSKVA-------CETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSI 76 (200)
Q Consensus 25 DaILDa~L~~Dp~arVA-------~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~I 76 (200)
|.+++. |++||+..|- |......-..+|-||+-+. -+-++++.++.+.|
T Consensus 17 ~~~~~~-Le~~p~~~Vie~gCl~~Cg~C~~~pFAlVnG~~V~A--~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 17 DQVYEK-LEKDPDIDVIEYGCLSYCGPCAKKPFALVNGEIVAA--ETAEELLEKIKEKI 72 (78)
T ss_pred HHHHHH-HhcCCCccEEEcChhhhCcCCCCCccEEECCEEEec--CCHHHHHHHHHHHH
Confidence 445555 6789998764 5566677789999998663 34556666665554
No 52
>PF08401 DUF1738: Domain of unknown function (DUF1738); InterPro: IPR013610 This region is found in a number of bacterial hypothetical proteins. Some members are annotated as being similar to replication primases, and in fact this region is often found together with the Toprim domain (IPR006171 from INTERPRO).
Probab=22.35 E-value=99 Score=24.25 Aligned_cols=25 Identities=28% Similarity=0.633 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcccCCC
Q 044843 144 LATKLGAKLTEVRKNGTCPWLRPDG 168 (200)
Q Consensus 144 lAh~L~~rl~~~Rk~g~~~~lrPD~ 168 (200)
+..+++.++-+.-++|..||-+|=.
T Consensus 4 ~~~~it~~ii~~le~g~~pW~kpW~ 28 (125)
T PF08401_consen 4 IYQEITDKIIEALEKGTAPWQKPWS 28 (125)
T ss_pred HHHHHHHHHHHHHHhCCCCccCccc
Confidence 3456777777777779999998865
No 53
>PF12963 DUF3852: Protein of unknown function (DUF3852); InterPro: IPR024330 This entry represents a family of uncharacterised bacterial proteins found by clustering human gut metagenomic sequences [].
Probab=22.34 E-value=83 Score=25.19 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcccC
Q 044843 138 MPLSHVLATKLGAKLTEVRKNGTCPWLRP 166 (200)
Q Consensus 138 MPl~i~lAh~L~~rl~~~Rk~g~~~~lrP 166 (200)
|=|.+.+=-||....-+.||.|.+.|..|
T Consensus 60 lILav~ffvKl~~ayfdYrKhGqfew~~p 88 (111)
T PF12963_consen 60 LILAVFFFVKLGMAYFDYRKHGQFEWAAP 88 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchhH
Confidence 33666777788888899999999999877
No 54
>PRK13669 hypothetical protein; Provisional
Probab=21.07 E-value=2.2e+02 Score=21.40 Aligned_cols=49 Identities=24% Similarity=0.494 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCeEE-------EEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhc
Q 044843 25 DAVLDACLAQDPDSKVA-------CETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSI 76 (200)
Q Consensus 25 DaILDa~L~~Dp~arVA-------~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~I 76 (200)
+.+.. .|++||++-|. |-....+-..+|-||+.+. -+-++++.++.+.|
T Consensus 17 ~~~~~-~Le~dP~~dVie~gCls~CG~C~~~~FAlVng~~V~a--~t~eeL~~kI~~~i 72 (78)
T PRK13669 17 QAAFE-KLEKDPNLDVLEYGCLGYCGICSEGLFALVNGEVVEG--ETPEELVENIYAHL 72 (78)
T ss_pred HHHHH-HHHhCCCceEEEcchhhhCcCcccCceEEECCeEeec--CCHHHHHHHHHHHH
Confidence 34445 56899999863 5556677789999998663 34556666665554
No 55
>PRK05588 histidinol-phosphatase; Provisional
Probab=20.91 E-value=75 Score=27.24 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=17.1
Q ss_pred CCCCcch---------------hhhhhHHHHHHHhhcCCCCeEEEEEE
Q 044843 13 EGHPDKL---------------CDQVSDAVLDACLAQDPDSKVACETC 45 (200)
Q Consensus 13 eGHPDKi---------------cDqISDaILDa~L~~Dp~arVA~E~~ 45 (200)
-||||.+ ++...+.||+++-+. .+++|+=
T Consensus 142 lgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~----g~~lEIN 185 (255)
T PRK05588 142 LGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEK----EKVLEIN 185 (255)
T ss_pred ccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHc----CCEEEEE
Confidence 5899955 233445666666555 4566643
No 56
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=20.35 E-value=86 Score=21.66 Aligned_cols=17 Identities=41% Similarity=0.741 Sum_probs=13.5
Q ss_pred HHHHHHHhhcCC---CCeEE
Q 044843 25 DAVLDACLAQDP---DSKVA 41 (200)
Q Consensus 25 DaILDa~L~~Dp---~arVA 41 (200)
|.|||.++--|| ..|.|
T Consensus 3 Dki~d~L~G~d~~~~~~r~a 22 (54)
T PF10058_consen 3 DKILDVLLGDDPTSPSNRYA 22 (54)
T ss_pred HHHHHHHhCCCCccccCcee
Confidence 778999999999 55554
No 57
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=20.29 E-value=2.2e+02 Score=21.48 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=25.7
Q ss_pred CCCCeEEEEEEeeeCeEEEEEEEeeee------eccHHHHHHHHHHhcC
Q 044843 35 DPDSKVACETCTKTNMVMVFGEITTKA------NVDYEKIVRDTCRSIG 77 (200)
Q Consensus 35 Dp~arVA~E~~v~~~~V~i~GEitt~a------~vd~~~ivR~~i~~IG 77 (200)
-|+|+ |+. ..++|+++|-+.... .-|+++=+|.+++++.
T Consensus 9 ~~Ys~-av~---~g~~v~isGq~~~d~~~~~~~~~~~~~Q~~~~l~ni~ 53 (121)
T PF01042_consen 9 GPYSQ-AVR---AGDTVFISGQVGIDPATGQVVPGDIEEQTRQALDNIE 53 (121)
T ss_dssp SSSBS-EEE---ETTEEEEEEEESBCTTTSSBSSSSHHHHHHHHHHHHH
T ss_pred CCCCC-EEE---ECCEEEEeeeCCcCCCCCcCCCCCHHHHHHHHHHhhh
Confidence 46777 666 789999999886542 4566665555554443
Done!