Query 044843
Match_columns 200
No_of_seqs 169 out of 1041
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 6E-102 2E-106 707.6 17.1 197 2-200 21-217 (415)
2 3iml_A S-adenosylmethionine sy 100.0 1E-100 4E-105 696.9 19.3 194 2-200 7-200 (399)
3 2p02_A S-adenosylmethionine sy 100.0 2E-100 6E-105 696.1 18.6 197 2-200 17-213 (396)
4 3s82_A S-adenosylmethionine sy 100.0 1E-100 4E-105 699.2 16.4 195 2-200 8-212 (407)
5 1p7l_A S-adenosylmethionine sy 100.0 1.1E-99 4E-104 688.7 18.7 191 3-200 2-192 (383)
6 4hpv_A S-adenosylmethionine sy 97.3 0.0003 1E-08 64.9 5.7 140 12-171 29-206 (407)
7 2w42_A PIWI, putative uncharac 65.0 4.8 0.00016 36.5 3.7 29 135-163 384-412 (427)
8 2gjh_A Designed protein; oblig 63.1 6.3 0.00022 26.8 3.1 38 64-101 18-55 (62)
9 1qys_A TOP7; alpha-beta, novel 48.5 6.9 0.00023 29.1 1.5 38 64-101 62-99 (106)
10 1kjn_A MTH0777; hypotethical p 38.0 9.4 0.00032 31.0 0.8 23 129-151 13-35 (157)
11 4afi_A AP-3 complex subunit de 25.6 56 0.0019 26.2 3.5 48 28-78 44-91 (173)
12 2fm8_A Surface presentation of 23.7 67 0.0023 25.1 3.5 45 62-108 3-48 (135)
13 3b84_A Zinc finger and BTB dom 23.2 31 0.0011 24.7 1.4 44 138-195 2-45 (119)
14 3iwl_A Copper transport protei 22.6 1.1E+02 0.0039 19.0 4.0 47 24-80 16-62 (68)
15 1u04_A Argonaute, hypothetical 21.4 62 0.0021 31.9 3.5 19 135-153 735-753 (771)
16 3ho1_A Argonaute; argonaute, p 21.3 50 0.0017 32.2 2.8 22 134-155 648-669 (685)
17 3noh_A Putative peptide bindin 21.1 53 0.0018 26.0 2.4 33 120-155 55-87 (139)
18 2yhb_A QDE-2, post-transcripti 20.5 51 0.0017 30.0 2.5 22 134-155 377-398 (437)
19 2q81_A MIZ-1 protein; BTB/POZ 20.3 38 0.0013 24.2 1.4 44 138-195 5-48 (119)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=6.3e-102 Score=707.58 Aligned_cols=197 Identities=61% Similarity=1.005 Sum_probs=181.1
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++
T Consensus 21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~ 100 (415)
T 3so4_A 21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT 100 (415)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||++||+|+++|++|||||||||+.+ +..+++||||||||||||||||||||||||+|||||++||+++||+|++
T Consensus 101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l 178 (415)
T 3so4_A 101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL 178 (415)
T ss_dssp GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999964 2235799999999999999999999999999999999999999999999
Q ss_pred CcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|||||||||||||+|++++|+++|+||+||||||||+++
T Consensus 179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~ 217 (415)
T 3so4_A 179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADN 217 (415)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTT
T ss_pred CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCC
Confidence 999999999999999976678899999999999999874
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.3e-100 Score=696.94 Aligned_cols=194 Identities=55% Similarity=0.870 Sum_probs=168.2
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++
T Consensus 7 ~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~ 86 (399)
T 3iml_A 7 NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNT 86 (399)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC--
T ss_pred cCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||++||+|+++|++|||||+|||+.+. ...+++||||||||||||||||||||||||+|||||++||+++||+|++
T Consensus 87 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l 165 (399)
T 3iml_A 87 DYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL 165 (399)
T ss_dssp -------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999631 1235799999999999999999999999999999999999999999999
Q ss_pred CcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||+||||||+|++ | +|+||+||||||||+++
T Consensus 166 ~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~ 200 (399)
T 3iml_A 166 PWLRPDAKSQVTVRYVD--G--KPHSIDTVVLSTQHAPE 200 (399)
T ss_dssp TTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTT
T ss_pred CeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCC
Confidence 99999999999999985 3 89999999999999874
No 3
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=1.8e-100 Score=696.09 Aligned_cols=197 Identities=66% Similarity=1.059 Sum_probs=187.2
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||+++
T Consensus 17 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~ 96 (396)
T 2p02_A 17 GTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDS 96 (396)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044843 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTC 161 (200)
Q Consensus 82 ~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~ 161 (200)
++|||++||+|+++|++|||||||||+... + .+++||||||||||||||||||||||||+|||||++||+++||+|++
T Consensus 97 ~~gfd~~tc~Vl~~i~~QSpDIaqGV~~~~-~-~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l 174 (396)
T 2p02_A 97 SKGFDYKTCNVLVALEQQSPDIAQGVHLDR-N-EEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTL 174 (396)
T ss_dssp GGTEETTTSEEEEEEECCCHHHHHHHTTTC-C-GGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCCCCCceEEEEecccCChhhhhcccccc-c-ccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999531 1 13699999999999999999999999999999999999999999999
Q ss_pred CcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 162 ~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|||||||||||||+|++++|.++|+|||||||||||+++
T Consensus 175 ~~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~ 213 (396)
T 2p02_A 175 PWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEE 213 (396)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSS
T ss_pred CccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCC
Confidence 999999999999999854466789999999999999874
No 4
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=1.2e-100 Score=699.24 Aligned_cols=195 Identities=57% Similarity=0.849 Sum_probs=171.7
Q ss_pred CcceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeee---eeccHHHHHHHHHHhcCC
Q 044843 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK---ANVDYEKIVRDTCRSIGF 78 (200)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~---a~vd~~~ivR~~i~~IGY 78 (200)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++|||++|||++|++|||
T Consensus 8 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY 87 (407)
T 3s82_A 8 KGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGY 87 (407)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTC
T ss_pred CceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCCceEEEEEeccCChhhhhccccccc-------cccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHH
Q 044843 79 TSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLT-------KRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 79 ~~~~~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~r 151 (200)
+++++|||++||+|+++|++|||||||||+.+.+ +..+++||||||||||||||||||||||||+|||||++|
T Consensus 88 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~r 167 (407)
T 3s82_A 88 DSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRR 167 (407)
T ss_dssp EEGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHH
T ss_pred CCcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHH
Confidence 9999999999999999999999999999996421 112579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 152 LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 152 l~~~Rk~g~~~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
|+++||+|++||||||+||||||+|++ | +|+||+||||||||+++
T Consensus 168 la~~Rk~g~l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~ 212 (407)
T 3s82_A 168 LTEVRKNGVLPYLRPDGKTQVTIEFED--D--VPVRLDTVVISTQHAAD 212 (407)
T ss_dssp HHHHHHTSSSTTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTT
T ss_pred HHHHHHcCCCCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCC
Confidence 999999999999999999999999984 3 89999999999999874
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=1.1e-99 Score=688.74 Aligned_cols=191 Identities=59% Similarity=0.877 Sum_probs=184.1
Q ss_pred cceeeccCCCCCCCcchhhhhhHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCCCC
Q 044843 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDD 82 (200)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (200)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 044843 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCP 162 (200)
Q Consensus 83 ~gfd~~tc~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~Rk~g~~~ 162 (200)
+|||++||+|+++|++|||||+|||+... .+++||||||||||||||||||||||||+|||||++||+++||+|++|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999532 236999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEEecCCCeeeeeEEeEEEEeeeeCCC
Q 044843 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDET 200 (200)
Q Consensus 163 ~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~QH~~~ 200 (200)
||||||||||||+|++ | +|+||+||||||||+++
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~ 192 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEE 192 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTT
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCC
Confidence 9999999999999985 3 89999999999999874
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=97.26 E-value=0.0003 Score=64.94 Aligned_cols=140 Identities=23% Similarity=0.319 Sum_probs=84.5
Q ss_pred CCCCCcchhhhhhHHHHHHH----hhc---------CCCCeEEEEEEee--------eCeEEEEEEEeeeee-------c
Q 044843 12 NEGHPDKLCDQVSDAVLDAC----LAQ---------DPDSKVACETCTK--------TNMVMVFGEITTKAN-------V 63 (200)
Q Consensus 12 ~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~V~i~GEitt~a~-------v 63 (200)
+-||||-|||-|++++=-++ |++ |+---||-+..-+ .=.|+++|..|+... +
T Consensus 29 GiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~i 108 (407)
T 4hpv_A 29 GLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQI 108 (407)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEEC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCccccccc
Confidence 67999999999999875443 322 5544555554332 234788998876532 6
Q ss_pred cHHHHHH----HHHHh-cCCCCCCCCCCCCc-eEEEEEeccCChhhhhccccccccccccCCCCcceeeeeeeCCCCCCC
Q 044843 64 DYEKIVR----DTCRS-IGFTSDDVGLDADH-CKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGYATDETPEL 137 (200)
Q Consensus 64 d~~~ivR----~~i~~-IGY~~~~~gfd~~t-c~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~dET~e~ 137 (200)
.+.+|+. +.|++ +.+ +|.++ ..+...|.+-|+|+..-.... ..--.|-|-....|||
T Consensus 109 Pv~~Ia~~AAk~~l~~~l~~------lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyA------- 171 (407)
T 4hpv_A 109 PVGTIIIESVKEWIRNNFRY------LDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFA------- 171 (407)
T ss_dssp CHHHHHHHHHHHHHHHHCSS------CCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEE-------
T ss_pred CHHHHHHHHHHHHHHHhccc------CCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccC-------
Confidence 7777764 44444 222 45443 677788999999987655431 1124799999999998
Q ss_pred CCcHHH--HHHHHHHHHH--HHHHcCCCCcccCCCcce
Q 044843 138 MPLSHV--LATKLGAKLT--EVRKNGTCPWLRPDGKTQ 171 (200)
Q Consensus 138 MPl~i~--lAh~L~~rl~--~~Rk~g~~~~lrPD~KtQ 171 (200)
||+-. |.-.+-+.|. ++++ .+||.+.|-|.-
T Consensus 172 -PlS~~E~~Vl~~E~~Lns~~~k~--~~P~~GeDIKVM 206 (407)
T 4hpv_A 172 -PLTKLEKLVYETERHLNSKQFKA--KLPEVGEDIKVM 206 (407)
T ss_dssp -SCCHHHHHHHHHHHHHHSHHHHH--HCTTEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHhcchhhhh--hCcccCCceEEE
Confidence 33321 1222222221 3333 489999999873
No 7
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=64.96 E-value=4.8 Score=36.53 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 044843 135 PELMPLSHVLATKLGAKLTEVRKNGTCPW 163 (200)
Q Consensus 135 ~e~MPl~i~lAh~L~~rl~~~Rk~g~~~~ 163 (200)
..=+|.|+.+||+|+.++.++..-+..||
T Consensus 384 ~v~vPap~~YAhklA~l~~~~~~~~~~~~ 412 (427)
T 2w42_A 384 SRNLPVTVNYPKLVAGIIANVNRYGGYPI 412 (427)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCcCcchHhHHHHHHHHhhhhhcCCCcc
Confidence 34589999999999999999987555444
No 8
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=63.10 E-value=6.3 Score=26.83 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEeccCCh
Q 044843 64 DYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSP 101 (200)
Q Consensus 64 d~~~ivR~~i~~IGY~~~~~gfd~~tc~v~~~i~~QS~ 101 (200)
.+..|.-++..+.||++-..-+|.+|.+|--.++.-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 35668889999999999988999999998877776553
No 9
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=48.53 E-value=6.9 Score=29.08 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEeccCCh
Q 044843 64 DYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSP 101 (200)
Q Consensus 64 d~~~ivR~~i~~IGY~~~~~gfd~~tc~v~~~i~~QS~ 101 (200)
.+..|.-++..+.||++-..-||.++.+|--.++.-|-
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 46678889999999999999999999998877766553
No 10
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=38.03 E-value=9.4 Score=31.04 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.5
Q ss_pred eeCCCCCCCCCcHHHHHHHHHHH
Q 044843 129 YATDETPELMPLSHVLATKLGAK 151 (200)
Q Consensus 129 YA~dET~e~MPl~i~lAh~L~~r 151 (200)
.-|-|.|-..|+.++|+|+|-++
T Consensus 13 LGCPE~Pvq~p~~lYl~~~Lk~~ 35 (157)
T 1kjn_A 13 LGCPESPVQIPLAIYTSHKLKKK 35 (157)
T ss_dssp CCCSCSTTHHHHHHHHHHHHHHT
T ss_pred ecCCCCcchhhHHHHHHHHHHhc
Confidence 34999999999999999999776
No 11
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=25.61 E-value=56 Score=26.15 Aligned_cols=48 Identities=4% Similarity=-0.033 Sum_probs=35.1
Q ss_pred HHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCC
Q 044843 28 LDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGF 78 (200)
Q Consensus 28 LDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY 78 (200)
+|.+|++|-+-- .+=.+|+.|.++++ |-++. .-|+..++|.+|+++.=
T Consensus 44 ~~~y~~~~~~M~-I~Ya~VArg~tiLA-E~t~~-~gnf~~va~~iL~kip~ 91 (173)
T 4afi_A 44 SDQYVKLEEAMA-ILFAVVARGTTILA-KHAWC-GGNFLEVTEQILAKIPS 91 (173)
T ss_dssp CSSEEESSCCCC-EEEEEEEETTEEEE-EEESS-CCCHHHHHHHHHTTSCS
T ss_pred hhHHHhhhcccc-EEEEEEECCCEEEE-EccCC-CCCHHHHHHHHHHhCCC
Confidence 577888876654 45566778888876 55543 35889999999999853
No 12
>2fm8_A Surface presentation of antigens protein SPAK; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=23.70 E-value=67 Score=25.09 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=33.6
Q ss_pred eccHHHHHHHHHHhcCCCCCC-CCCCCCceEEEEEeccCChhhhhccc
Q 044843 62 NVDYEKIVRDTCRSIGFTSDD-VGLDADHCKVLVNIEQQSPDIAQGVH 108 (200)
Q Consensus 62 ~vd~~~ivR~~i~~IGY~~~~-~gfd~~tc~v~~~i~~QS~dIa~gV~ 108 (200)
++|+.+++|+++.++|-.+.- -++|.-+ +|-..++ -.|+|.-...
T Consensus 3 ~~di~~Lv~~~L~~~Gc~~~li~~Ld~HS-tI~L~l~-d~P~I~I~~~ 48 (135)
T 2fm8_A 3 HLDIAELVRSALEVSGCDPSLIGGIDSHS-TIVLDLF-ALPSICISVK 48 (135)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGBCCCCSSS-EEEEEES-SSCCEEEEEE
T ss_pred cchHHHHHHHHHHHcCCChhHhhccCCcC-cEEeecC-CCCCeeEEec
Confidence 579999999999999954422 2366654 7888888 7899976543
No 13
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=23.20 E-value=31 Score=24.68 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcccCCCcceEEEEEecCCCeeeeeEEeEEEEee
Q 044843 138 MPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLIST 195 (200)
Q Consensus 138 MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~ 195 (200)
||.+ ..+..|.+.|.++|++|.+. | |++.-+ | +..++|..|+++
T Consensus 2 ~~~~-~h~~~l~~~l~~l~~~~~~~----D----v~l~v~---~--~~f~aHk~vLaa 45 (119)
T 3b84_A 2 MSFV-QHSVRVLQELNKQREKGQYC----D----ATLDVG---G--LVFKAHWSVLAC 45 (119)
T ss_dssp CCHH-HHHHHHHHHHHHHHHHTCSC----C----EEEEET---T--EEEEECHHHHHH
T ss_pred cccc-hHHHHHHHHHHHHHhcCCCc----c----eEEEEC---C--EEEEeeHHHHhh
Confidence 5555 45778899999999998765 5 666543 2 568888777654
No 14
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=22.61 E-value=1.1e+02 Score=19.01 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=28.5
Q ss_pred hHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEEeeeeeccHHHHHHHHHHhcCCCC
Q 044843 24 SDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTS 80 (200)
Q Consensus 24 SDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (200)
+..|-.+ |+.-|.. .+++-..++.+.|.+ .++.++ +.+.|++.||.-
T Consensus 16 ~~~i~~~-l~~~~gV--~v~v~~~~~~~~v~~------~~~~~~-i~~~i~~~Gy~~ 62 (68)
T 3iwl_A 16 AEAVSRV-LNKLGGV--KYDIDLPNKKVCIES------EHSMDT-LLATLKKTGKTV 62 (68)
T ss_dssp HHHHHHH-HHHHCSE--EEEEETTTTEEEEEE------SSCHHH-HHHHHHTTCSCE
T ss_pred HHHHHHH-HHcCCCe--EEEEEcCCCEEEEEe------cCCHHH-HHHHHHHcCCce
Confidence 3344333 4443433 667777778887754 345555 677888999963
No 15
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=21.37 E-value=62 Score=31.93 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.5
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 044843 135 PELMPLSHVLATKLGAKLT 153 (200)
Q Consensus 135 ~e~MPl~i~lAh~L~~rl~ 153 (200)
..-+|.|+.+||+|+.++.
T Consensus 735 svrvPAP~~YAhklA~lvg 753 (771)
T 1u04_A 735 DMRLPAPVHYAHKFANAIR 753 (771)
T ss_dssp CCCSCHHHHHHHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHHH
Confidence 4558999999999999885
No 16
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=21.31 E-value=50 Score=32.21 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 044843 134 TPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 134 T~e~MPl~i~lAh~L~~rl~~~ 155 (200)
...-+|.|+.+||+++++++.+
T Consensus 648 ~svsvPAP~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 648 AFPRLPAPLHLADRLVKEVGRL 669 (685)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCcChHHHHHHHHHHHHHHh
Confidence 5667999999999999988776
No 17
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=21.13 E-value=53 Score=25.95 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCcceeeeeeeCCCCCCCCCcHHHHHHHHHHHHHHH
Q 044843 120 AGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 120 AGDQGimfGYA~dET~e~MPl~i~lAh~L~~rl~~~ 155 (200)
-||.-+-|-.+..||+ -|| +.+|.+|++||+..
T Consensus 55 ~tdtel~~~l~v~etd--y~L-~~YA~~Lc~RL~~A 87 (139)
T 3noh_A 55 RTDTELSFDIYVSETD--YAL-IRYADSLCERLNDA 87 (139)
T ss_dssp CCSSCCEEEEEEETTC--HHH-HHHHHHHHHHHHHT
T ss_pred ccccceeeEEEEeccc--hHH-HHHHHHHHHHHHhc
Confidence 4566677888888888 566 88999999999764
No 18
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=20.52 E-value=51 Score=29.97 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=14.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 044843 134 TPELMPLSHVLATKLGAKLTEV 155 (200)
Q Consensus 134 T~e~MPl~i~lAh~L~~rl~~~ 155 (200)
.+--+|.|.++||++++|....
T Consensus 377 ~sVsipaP~yYAh~~a~R~r~~ 398 (437)
T 2yhb_A 377 KAVSICPPAYYADLVCDRARIH 398 (437)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHH
Confidence 3455899999999999986543
No 19
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=20.34 E-value=38 Score=24.17 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcccCCCcceEEEEEecCCCeeeeeEEeEEEEee
Q 044843 138 MPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLIST 195 (200)
Q Consensus 138 MPl~i~lAh~L~~rl~~~Rk~g~~~~lrPD~KtQVtv~Y~~~~~~~~p~rv~tiviS~ 195 (200)
+|.| ..+..|.++|.++|++|.+. | |++.-+ | +.+++|..|+++
T Consensus 5 ~~~~-~h~~~l~~~l~~l~~~~~~~----D----v~l~v~---~--~~~~aHk~vLaa 48 (119)
T 2q81_A 5 SDFP-QHSQHVLEQLNQQRQLGLLC----D----CTFVVD---G--VHFKAHKAVLAA 48 (119)
T ss_dssp CCHH-HHHHHHHHHHHHHHHHTCSC----C----EEEEET---T--EEEEECHHHHHH
T ss_pred cccc-hHHHHHHHHHHHHHhcCCCc----c----eEEEEC---C--EEEehhHHHHHH
Confidence 4454 45778999999999998764 5 666643 2 568888777654
Done!