RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044843
(200 letters)
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase.
Length = 386
Score = 443 bits (1142), Expect = e-159
Identities = 188/200 (94%), Positives = 193/200 (96%)
Query: 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
METFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
Query: 61 ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
A VDYEKIVRDTCR IGF SDDVGLDAD CKVLVNIEQQSPDIAQGVHGHLTK+ EEIGA
Sbjct: 61 AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120
Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
GDQGHMFGYATDETPELMPL+HVLATKLGA+LTEVRKNGTCPWLRPDGKTQVTVEY NE
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180
Query: 181 GAMVPVRVHTVLISTQHDET 200
GAMVP+RVHTVLISTQHDET
Sbjct: 181 GAMVPIRVHTVLISTQHDET 200
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional.
Length = 398
Score = 400 bits (1030), Expect = e-142
Identities = 147/200 (73%), Positives = 164/200 (82%), Gaps = 3/200 (1%)
Query: 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
+ FLFTSESV+EGHPDKLCDQ+SDAVLDACLAQDP SKVACETC KT MVMVFGEITTK
Sbjct: 8 VGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTK 67
Query: 61 ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
A VDY+K+VRDT + IG+ + GLD C VLV IEQQSPDIAQGVH K+ E+IGA
Sbjct: 68 AVVDYQKVVRDTVKEIGYDDTEKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KKEEDIGA 125
Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEY-YNE 179
GDQG MFGYATDET ELMPL+H LATKL +L+E+RKNG PWLRPD KTQVTVEY Y+
Sbjct: 126 GDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGILPWLRPDAKTQVTVEYEYDT 185
Query: 180 NGAMVPVRVHTVLISTQHDE 199
G + P RVHT+LISTQHDE
Sbjct: 186 RGGLTPKRVHTILISTQHDE 205
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.
Length = 384
Score = 346 bits (890), Expect = e-120
Identities = 123/196 (62%), Positives = 152/196 (77%), Gaps = 7/196 (3%)
Query: 4 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANV 63
+LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDP+++VACET T +V+V GEITT A V
Sbjct: 3 YLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYV 62
Query: 64 DYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQ 123
D E+IVR+T + IG+TS + G DA+ C VLV+I +QSPDIAQGV +EIGAGDQ
Sbjct: 63 DIEEIVRETIKEIGYTSSEYGFDANTCAVLVSIGEQSPDIAQGVD---RDELDEIGAGDQ 119
Query: 124 GHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAM 183
G MFGYA +ETPELMPL LA +L +L EVRK+GT P+LRPD K+QVTVEY ENG
Sbjct: 120 GIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLPYLRPDAKSQVTVEY--ENG-- 175
Query: 184 VPVRVHTVLISTQHDE 199
PVR+ T+++STQHD
Sbjct: 176 KPVRIDTIVVSTQHDP 191
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme
metabolism].
Length = 388
Score = 330 bits (848), Expect = e-114
Identities = 122/199 (61%), Positives = 146/199 (73%), Gaps = 4/199 (2%)
Query: 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
+ FLFTSESV+EGHPDK+CDQ+SDA+LDA L QDP+S+VACET T +V++ GEITT
Sbjct: 2 KKYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTS 61
Query: 61 ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGA 120
A VD I R T + IG+T D G DA C VLV I +QSPDIAQGV + +EIGA
Sbjct: 62 AYVDIVNIARKTIKEIGYTESDYGFDAKTCAVLVAIGEQSPDIAQGVDEAD-EELDEIGA 120
Query: 121 GDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
GDQG MFGYA +ETPELMPL LA +L +L EVRKNG PWLRPD K+QVTVE Y +N
Sbjct: 121 GDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELPWLRPDAKSQVTVE-YEDN 179
Query: 181 GAMVPVRVHTVLISTQHDE 199
G PVR+ T+++STQHD
Sbjct: 180 G--KPVRIDTIVVSTQHDP 196
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase. Tandem isozymes
of this S-adenosylmethionine synthetase in E. coli are
designated MetK and MetX [Central intermediary
metabolism, Other].
Length = 377
Score = 306 bits (786), Expect = e-105
Identities = 120/195 (61%), Positives = 143/195 (73%), Gaps = 7/195 (3%)
Query: 5 LFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVD 64
LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP +KVACET KT +V++ GEITT A VD
Sbjct: 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVD 60
Query: 65 YEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQG 124
+++ R+T + IG+T D G DA C VLV I QSPDIAQGV EE GAGDQG
Sbjct: 61 IQEVARNTIKDIGYTDSDYGFDAKTCAVLVAIGNQSPDIAQGVDK---ANPEEQGAGDQG 117
Query: 125 HMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMV 184
MFGYAT+ETPELMPL LA KL + E+RK+GT PWLRPDGK+QVTV+Y +
Sbjct: 118 IMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWLRPDGKSQVTVQYEDNK---- 173
Query: 185 PVRVHTVLISTQHDE 199
PVRV T+++STQHD
Sbjct: 174 PVRVDTIVLSTQHDP 188
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.
Length = 386
Score = 277 bits (711), Expect = 1e-93
Identities = 122/202 (60%), Positives = 147/202 (72%), Gaps = 8/202 (3%)
Query: 1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
M TFLFTSESV EGHPDKLCDQ+SDA+LDACL QDP S+VACE T +V+V GEIT+
Sbjct: 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSS 60
Query: 61 ANVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGV--HGHLTKRAEEI 118
A VD EKIVR+ + IG+ D++G D C VLV++ +QSPDIAQGV + EE+
Sbjct: 61 AKVDIEKIVRNVIKEIGY--DELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEEL 118
Query: 119 GAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYN 178
GAGDQG MFGYA DETPELMPL VLA +L +L + RK+G P L PDGKTQVTVEY +
Sbjct: 119 GAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKDGLLPGLLPDGKTQVTVEYED 178
Query: 179 ENGAMVPVRVHTVLISTQHDET 200
PVRV T+++S QHDE+
Sbjct: 179 G----RPVRVDTIVVSAQHDES 196
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase,
N-terminal domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 100
Score = 193 bits (493), Expect = 2e-64
Identities = 64/100 (64%), Positives = 80/100 (80%)
Query: 2 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKA 61
+LFTSESV+EGHPDK+CDQ+SDA+LDA LAQDP+S+VACET T +V+V GEITT A
Sbjct: 1 SRYLFTSESVSEGHPDKICDQISDAILDAFLAQDPNSRVACETLVTTGLVVVAGEITTSA 60
Query: 62 NVDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSP 101
VD EKIVR+ + IG+ S ++G DAD C VLV+I +QSP
Sbjct: 61 YVDIEKIVREVIKDIGYDSSELGFDADTCAVLVSIHEQSP 100
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase,
central domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 119
Score = 165 bits (421), Expect = 3e-53
Identities = 57/84 (67%), Positives = 67/84 (79%), Gaps = 4/84 (4%)
Query: 116 EEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVE 175
+EIGAGDQG MFGYAT+ETPELMPL VLA +L +L E+RKNGT P+LRPDGK+QVTVE
Sbjct: 1 DEIGAGDQGIMFGYATNETPELMPLPIVLAHRLLRRLAELRKNGTLPYLRPDGKSQVTVE 60
Query: 176 YYNENGAMVPVRVHTVLISTQHDE 199
Y + PVRV TV++STQHD
Sbjct: 61 YED----GKPVRVDTVVVSTQHDP 80
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 32.7 bits (75), Expect = 0.12
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 80 SDDVGLDADHCKVLVNIEQQSPDI----AQGVHGHLTKRAEEIGAGDQGHMFGYATDET 134
V LDAD ++ P G+ R + M G TDE
Sbjct: 307 GAHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDPYDRPIPVFPAQHYTMGGVRTDEN 365
>gnl|CDD|222179 pfam13501, SoxY, Sulfur oxidation protein SoxY. This domain is
found in the sulfur oxidation protein SoxY. It is
closely related to the Desulfoferrodoxin family
pfam01880. Dissimilatory oxidation of thiosulfate is
carried out by the ubiquitous sulfur-oxidizing (Sox)
multi-enzyme system. In this system, SoxY plays a key
role, functioning as the sulfur substrate-binding
protein that offers its sulfur substrate, which is
covalently bound to a conserved C-terminal cysteine, to
another oxidizing Sox enzyme. The structure of this
domain shows an Ig-like fold.
Length = 110
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 164 LRPDGKTQVTVEYYNENGAMVPVRVHTVL 192
+ G+ ++ ENGA+VPV V L
Sbjct: 12 VVESGRVKLDAPDIAENGAVVPVTVDVDL 40
>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only].
Length = 527
Score = 29.0 bits (65), Expect = 1.6
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 101 PDIAQGVHGHLTKRAEE--------IGAGDQGHMFGYATDETPELMPLSHVLATKLGAKL 152
D + G + R EE IG D G G + ++ E + + LA ++GA +
Sbjct: 30 EDRLDRLAGQMKYRLEEGDGEAVYVIGVSDDGEPLGLSDEKLVESIEVLRELAREVGASI 89
Query: 153 TEVRKNGTCPWLRPDGKT-QVTVEYYNENG 181
VR DG +V V E
Sbjct: 90 YIVRV-----HEGTDGYVAEVLVRRKTEEA 114
>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and
metabolism].
Length = 283
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 110 HLTKRAEEIGA------GDQGHMFGYATD 132
L+ RA IGA D G + GY TD
Sbjct: 79 ELSPRARLIGAVNTLVREDDGKLRGYNTD 107
>gnl|CDD|238871 cd01833, XynB_like, SGNH_hydrolase subfamily, similar to
Ruminococcus flavefaciens XynB. Most likely a secreted
hydrolase with xylanase activity. SGNH hydrolases are a
diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
Ser-His-Asp(Glu) triad found in other serine
hydrolases.
Length = 157
Score = 28.0 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 12 NEGHPDKLCDQVSDAVLDACLAQDPD 37
+EGH L DQ++ A D LA PD
Sbjct: 17 HEGHSGYLIDQIAAAAADWVLAAKPD 42
>gnl|CDD|240139 cd05006, SIS_GmhA, Phosphoheptose isomerase is a member of the SIS
(Sugar ISomerase) superfamily. Phosphoheptose isomerase
catalyzes the isomerization of sedoheptulose 7-phosphate
into D-glycero-D-mannoheptose 7-phosphate. This is the
first step of the biosynthesis of gram-negative bacteria
inner core lipopolysaccharide precursor,
L-glycero-D-mannoheptose (Gmh).
Length = 177
Score = 27.9 bits (63), Expect = 2.9
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 73 CRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVH---GHL 111
++I T D G + + +++ Q VH GH+
Sbjct: 129 MKTIALTGRDGGKLLELADIEIHVPSDDTPRIQEVHLLIGHI 170
>gnl|CDD|220258 pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1
(CRISPR_cse1). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This entry, represented by
CT1972 from Chlorobaculum tepidum, is found in the
CRISPR/Cas subtype Ecoli regions of many bacteria (most
of which are mesophiles), and not in Archaea. It is
designated Cse1.
Length = 475
Score = 28.5 bits (64), Expect = 2.9
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 78 FTSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFGY----AT-D 132
F G Q+ + G G T + G G + T
Sbjct: 135 FVKRGPGELCPAEAARALFTLQAFAPSGGS-GIRTGLRGDAGGGPLTTLVAVLPEGETLW 193
Query: 133 ETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKT 170
ET L L+ + + + + PW RP +T
Sbjct: 194 ET--LW-LNLLPQETIYPP-PDTTGDDVPPWERPPTRT 227
>gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial Elongation
factor G1 (mtEFG1)-like proteins found in eukaryotes.
Eukaryotic cells harbor 2 protein synthesis systems: one
localized in the cytoplasm, the other in the
mitochondria. Most factors regulating mitochondrial
protein synthesis are encoded by nuclear genes,
translated in the cytoplasm, and then transported to the
mitochondria. The eukaryotic system of elongation factor
(EF) components is more complex than that in
prokaryotes, with both cytoplasmic and mitochondrial
elongation factors and multiple isoforms being expressed
in certain species. Eukaryotic EF-2 operates in the
cytosolic protein synthesis machinery of eukaryotes,
EF-Gs in protein synthesis in bacteria. Eukaryotic
mtEFG1 proteins show significant homology to bacterial
EF-Gs. Mutants in yeast mtEFG1 have impaired
mitochondrial protein synthesis, respiratory defects and
a tendency to lose mitochondrial DNA. There are two
forms of mtEFG present in mammals (designated mtEFG1s
and mtEFG2s) mtEFG2s are not present in this group.
Length = 78
Score = 26.5 bits (59), Expect = 3.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 14/54 (25%)
Query: 93 LVNIEQQSPDIAQG-VHGHLTKRAEEIGAGDQGH-------------MFGYATD 132
++ +E +P QG V G L KR I D G MFGY+T+
Sbjct: 3 IMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTE 56
>gnl|CDD|235298 PRK04439, PRK04439, S-adenosylmethionine synthetase; Provisional.
Length = 399
Score = 27.8 bits (63), Expect = 3.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 14 GHPDKLCDQVSDAV 27
GHPD +CD +++AV
Sbjct: 28 GHPDTICDGIAEAV 41
>gnl|CDD|237889 PRK15052, PRK15052, D-tagatose-1,6-bisphosphate aldolase subunit
GatZ; Provisional.
Length = 421
Score = 27.9 bits (62), Expect = 3.9
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 10 SVNEGHPDKLCDQVSDAVLDACLAQD--PDSKVACETCTKTNMVMVFGEITTKANVDYEK 67
SV HP V++A LA D KV E +N V FG T D+ +
Sbjct: 18 SVCSAHP---------LVIEAALAFDLNSTRKVLIEA--TSNQVNQFGGYTGMTPADFRE 66
Query: 68 IVRDTCRSIGFTSDDVGLDADH 89
V +GF + + L DH
Sbjct: 67 FVYGIADKVGFPRERIILGGDH 88
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 27.9 bits (62), Expect = 4.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 45 CTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSD 81
CT+ N+ + + +DYE I+ D C G T D
Sbjct: 317 CTRENLENIIDDFLKHLGIDYE-IIGDNCMVYGDTID 352
>gnl|CDD|215298 PLN02542, PLN02542, fructose-1,6-bisphosphatase.
Length = 412
Score = 27.5 bits (61), Expect = 5.2
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 10 SVN-EGHPDKLCDQVSDAVLDACL----------AQDPDSKVACETCTKTNMVMVFGEIT 58
+VN +G K D +S+ V CL +++ D VA E N ++VF +
Sbjct: 128 AVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLD 187
Query: 59 TKANVD 64
+N+D
Sbjct: 188 GSSNID 193
>gnl|CDD|227021 COG4676, COG4676, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 268
Score = 27.1 bits (60), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 166 PDGKTQVTVEYYNENGAMVPVRVHTVL 192
DG+++ V++Y N R+ VL
Sbjct: 121 ADGQSRQRVQFYETNAGKTRARLRVVL 147
>gnl|CDD|178074 PLN02455, PLN02455, fructose-bisphosphate aldolase.
Length = 358
Score = 27.0 bits (60), Expect = 7.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 11 VNEGHPDKLCDQVSDAVLDACLAQDPDSKVACE-TCTKTNMV 51
V+ H K C V++ VL AC D V E T K NMV
Sbjct: 188 VDGSHDIKKCAAVTERVLAACYKALNDHHVLLEGTLLKPNMV 229
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 26.8 bits (59), Expect = 8.6
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 37 DSKVACETCTKTNMVMVFGEITTK-----ANVDYEKIVRDTCRSIG--FTSDDVG----- 84
D + A E TK ++F I + A ++ K +RD +G +D+V
Sbjct: 151 DVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRT 210
Query: 85 ---LDADHCKVLVNIEQQSPDIAQGVHGHLTKRAEEIGAGDQGHMFG 128
L +H KV +I I GV LT ++ G G FG
Sbjct: 211 GKFLAIEHYKVEPDIVTMGKGIGNGVPVSLTLTNFDVERGKHGSTFG 257
>gnl|CDD|216800 pfam01941, AdoMet_Synthase, S-adenosylmethionine synthetase
(AdoMet synthetase). This family consists of several
archaebacterial S-adenosylmethionine synthetase
C(AdoMet synthetase or MAT) (EC 2.5.1.6).
S-Adenosylmethionine (AdoMet) occupies a central role
in the metabolism of all cells. The biological roles of
AdoMet include acting as the primary methyl group
donor, as a precursor to the polyamines, and as a
progenitor of a 5'-deoxyadenosyl radical.
S-Adenosylmethionine synthetase catalyzes the only
known route of AdoMet biosynthesis. The synthetic
process occurs in a unique reaction in which the
complete triphosphate chain is displaced from ATP and a
sulfonium ion formed. MATs from various organisms
contain ~400-amino acid polypeptide chains.
Length = 396
Score = 26.7 bits (60), Expect = 9.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 14 GHPDKLCDQVSDAV 27
GHPD +CD +++AV
Sbjct: 28 GHPDSICDGIAEAV 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,761,634
Number of extensions: 867592
Number of successful extensions: 775
Number of sequences better than 10.0: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 31
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)