RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044843
(200 letters)
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 160 bits (406), Expect = 8e-52
Identities = 70/106 (66%), Positives = 84/106 (79%)
Query: 3 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN 62
TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET KT M+++ GEIT++A
Sbjct: 2 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 61
Query: 63 VDYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDIAQGVH 108
VDY+K+VR+ + IG+ G D C VLV +EQQSPDIAQGVH
Sbjct: 62 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH 107
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 146 bits (370), Expect = 2e-46
Identities = 64/100 (64%), Positives = 76/100 (76%)
Query: 4 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANV 63
LFTSESV+EGHPDK+ DQ+SDAVLDA L QDP ++VACET KT MV+V GEITT A V
Sbjct: 3 HLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWV 62
Query: 64 DYEKIVRDTCRSIGFTSDDVGLDADHCKVLVNIEQQSPDI 103
D E+I R+T R IG+ D+G DA+ C VL I +QSPDI
Sbjct: 63 DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDI 102
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 126
Score = 126 bits (319), Expect = 1e-38
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 116 EEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVE 175
E+IGAGDQG MFGYATDET E MPL+ VLA KL AKL E+R+NGT PWLRPD KTQVTV+
Sbjct: 3 EDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQ 62
Query: 176 YYNENGAMVPVRVHTVLISTQHDE 199
Y + GA++P+RVHT++IS QHDE
Sbjct: 63 YMQDRGAVLPIRVHTIVISVQHDE 86
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 116 bits (292), Expect = 2e-34
Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 116 EEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVE 175
E GAGDQG MFGYAT+ET LMP A +L + EVRKNGT PWLRPD K+QVT +
Sbjct: 5 LEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQ 64
Query: 176 YYNENGAMVPVRVHTVLISTQHDE 199
Y + V + V++STQH E
Sbjct: 65 YDDGK----IVGIDAVVLSTQHSE 84
>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
{Haemophilus ducreyi [TaxId: 730]}
Length = 154
Score = 30.6 bits (69), Expect = 0.062
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 22 QVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEI-TTKANVDYEKIVRDTCRSIGFTS 80
Q C A C+ T VF I T + + C +
Sbjct: 63 QFKVVGAAKCFAFLGKGTTDCKDTDHT----VFNLIPTNTGAFLIKDALLGFCIT-SHDF 117
Query: 81 DDVGLD---ADHCKVLVNIEQQ 99
DD+ L+ ++ Q
Sbjct: 118 DDLKLEPCGGSVSGRTFSLAYQ 139
>d1bvsa1 a.5.1.1 (A:148-203) DNA helicase RuvA subunit, C-terminal
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 56
Score = 25.7 bits (56), Expect = 0.85
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 14 GHPDKLCDQVSDAVLDACLAQDPDS 38
G K ++ +D VLD L +D
Sbjct: 15 GFAAKQAEEATDQVLDGELGKDGAV 39
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 27.5 bits (61), Expect = 1.2
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 10 SVNEGHPDKLCDQVSDAVLDACL--AQDPDSKVACE-TCTKTNMVMVFGEITTKANVDYE 66
SV HP V++A L ++ KV E T N V FG T D+
Sbjct: 18 SVCSAHPL---------VIEAALAFDRNSTRKVLIEATS---NQVNQFGGYTGMTPADFR 65
Query: 67 KIVRDTCRSIGFTSDDVGLDADHC 90
+ V +GF + + L DH
Sbjct: 66 EFVFAIADKVGFARERIILGGDHL 89
>d1beta_ g.17.1.3 (A:) beta-Nerve growth factor {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 107
Score = 25.1 bits (55), Expect = 3.0
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 20 CDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRS 75
CD VS V D A D K V V E+ +V + CR+
Sbjct: 6 CDSVSVWVGDKTTATD----------IKGKEVTVLAEVNINNSVFRQYFFETKCRA 51
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 457
Score = 25.9 bits (56), Expect = 4.3
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 30 ACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSDDVGLDADH 89
L DPD +A + +T + ++K + G V ++ D
Sbjct: 314 VALLGDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDF 373
Query: 90 CKVLVNIEQQSPDIAQGVHGHLTKRAEEIG 119
V I+ + D+ + + A E
Sbjct: 374 FDVHQWIKNEGVDLLIS-NTYGKFIAREEN 402
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 409
Score = 25.3 bits (55), Expect = 5.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 154 EVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVR 187
E+ + P+ + G T VE+ N N A+ P R
Sbjct: 15 EILNSPGYPFWKRQG-TMAAVEWCNTNYAL-PTR 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,800
Number of extensions: 32287
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 13
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)