BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044848
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/430 (33%), Positives = 223/430 (51%), Gaps = 46/430 (10%)
Query: 2 EISIVSKEVVRPSSLDVHLLKPFKISLLDQLTPTTFSPLILFYPM-RNTHLKGTQISTQL 60
++ VS+E++ PSS LK +KIS LDQL T P ILFYP +++L Q S L
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHL 63
Query: 61 KESLSKTLDRLYPFAGRVRDNLIINDYDEGVPHIETRVNTHLFEFLQN-PPMELLDQCLP 119
K+SLSK L YP AGR+ N ++ D GVP +E RV L + +QN +E LDQ LP
Sbjct: 64 KQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLP 123
Query: 120 ---YPPFSYQPNPDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATTSGFLRSWAANSRG 176
YP + N D VP AV+++ F+CGG A+G+ LSHKI D + + FL +W A RG
Sbjct: 124 SAAYPGGKIEVNED-VP-LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRG 181
Query: 177 ACHEAVTYKNLSESSIIFPPQNPSPNHHLSVMEKIWFREAKSKTRRFVFNAKAIASLRSE 236
+ N ++ FPP + +P+ L E + +RFVF+ + I +LR++
Sbjct: 182 ETE--IVLPNFDLAARHFPPVDNTPSPELVPDENVVM-------KRFVFDKEKIGALRAQ 232
Query: 237 C-KGERVSNPTRIEALSAFILKSVMLAPRST--ANSRFVLHQAVNLRRLTEPRLSTFSVG 293
N +R++ + A+I K V+ R+ A ++FV+ QAVNLR P L +++G
Sbjct: 233 ASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMG 292
Query: 294 NLFLFASAAYNMEHAAEMELHELVARMKQAVGSI----NREYLKILHGDESFPKVCEYIK 349
N+ AA + E + + +L+ ++ ++ N E LK + C Y
Sbjct: 293 NIATLLFAAVDAEW--DKDFPDLIGPLRTSLEKTEDDHNHELLKGM--------TCLYEL 342
Query: 350 KIEEVSTHKNLNAIISSSWLKFGFNEVDFGWGNPIWSGISGEFGSFRNLTIFKEIGSADY 409
+ +E+ + +SW + GF ++DFGWG P+ S + F RN + + S D
Sbjct: 343 EPQELLSF--------TSWCRLGFYDLDFGWGKPL-SACTTTFPK-RNAALLMDTRSGD- 391
Query: 410 DNAVEAWVTL 419
VEAW+ +
Sbjct: 392 --GVEAWLPM 399
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 98/415 (23%), Positives = 177/415 (42%), Gaps = 46/415 (11%)
Query: 1 MEISIVSKEVVRPSSLDVHLLKPFKISLLDQLTPTTFSPLILFY-PMRNTHLKGTQISTQ 59
M+I + +VRP+ + S +D + P +P + FY P +++ ++
Sbjct: 3 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV--- 57
Query: 60 LKESLSKTLDRLYPFAGRVRDN----LIINDYDEGVPHIETRVNTHLFEFLQNPPMELLD 115
LK++LS+ L YP AGR++ + + I EGV +E + + +F P L
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 117
Query: 116 QCLPYPPFSYQPNPDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATTSGFLRSWAANSR 175
+ +P Y +Q+ F CGG++LG+ + H DG + F+ SW+ +R
Sbjct: 118 RLIP--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 175
Query: 176 GACHEAVTYKNLSESSIIFPPQNPSPN-HHLSVME----KIWFREAKSKT------RRFV 224
G VT + +++ P P H+ K+ + AKS + F
Sbjct: 176 GL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFK 232
Query: 225 FNAKAIASLRSECK--GERVSNPTRIEALSAFILKSVMLAPRSTANSRFVLHQAVNLRRL 282
+ I++L+++ K G +S + E L+ + + A + L+ A + R
Sbjct: 233 LTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 291
Query: 283 TEPRLSTFSVGNLFLFASA---AYNMEHA----AEMELHELVARMKQAVGSINREYLKIL 335
P L GN+ A+ A ++E A ++H+ +ARM +YL++
Sbjct: 292 LRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQ 351
Query: 336 HGDESFPKVCEYIKKIEEVSTHKNLNAIISSSWLKFGFNEVDFGWGNPIWSGISG 390
P + ++ T K N I +SW++ ++ DFGWG PI+ G G
Sbjct: 352 ------PDLKALVRG---AHTFKCPNLGI-TSWVRLPIHDADFGWGRPIFMGPGG 396
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 175/415 (42%), Gaps = 46/415 (11%)
Query: 1 MEISIVSKEVVRPSSLDVHLLKPFKISLLDQLTPTTFSPLILFY-PMRNTHLKGTQISTQ 59
M+I + +VRP+ + S +D + P +P + FY P +++ ++
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV--- 60
Query: 60 LKESLSKTLDRLYPFAGRVRDN----LIINDYDEGVPHIETRVNTHLFEFLQNPPMELLD 115
LK++LS+ L YP AGR++ + + I EGV +E + + +F P L
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 116 QCLPYPPFSYQPNPDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATTSGFLRSWAANSR 175
+ +P Y +Q+ F CGG++LG+ + H DG + F+ SW+ +R
Sbjct: 121 RLIP--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query: 176 GACHEAVTYKNLSESSIIF---PPQ--------NPSPNHHLSVMEKIWFREAKSKTRRFV 224
G VT + +++ PPQ P P +S ++ F
Sbjct: 179 GL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFK 235
Query: 225 FNAKAIASLRSECK--GERVSNPTRIEALSAFILKSVMLAPRSTANSRFVLHQAVNLRRL 282
+ I++L+++ K G +S + E L+ + + A + L+ A + R
Sbjct: 236 LTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 294
Query: 283 TEPRLSTFSVGNLFLFASA---AYNMEHA----AEMELHELVARMKQAVGSINREYLKIL 335
P L GN+ A+ A ++E A ++H+ +ARM +YL++
Sbjct: 295 LRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQ 354
Query: 336 HGDESFPKVCEYIKKIEEVSTHKNLNAIISSSWLKFGFNEVDFGWGNPIWSGISG 390
P + ++ T K N I +SW++ ++ DFGWG PI+ G G
Sbjct: 355 ------PDLKALVRG---AHTFKXPNLGI-TSWVRLPIHDADFGWGRPIFMGPGG 399
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 174/415 (41%), Gaps = 46/415 (11%)
Query: 1 MEISIVSKEVVRPSSLDVHLLKPFKISLLDQLTPTTFSPLILFY-PMRNTHLKGTQISTQ 59
M+I + +VRP+ + S +D + P +P + FY P +++ ++
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKV--- 60
Query: 60 LKESLSKTLDRLYPFAGRVRDN----LIINDYDEGVPHIETRVNTHLFEFLQNPPMELLD 115
LK++LS+ L YP AGR++ + + I EGV +E + + +F P L
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELR 120
Query: 116 QCLPYPPFSYQPNPDQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATTSGFLRSWAANSR 175
+ +P Y +Q+ F GG++LG+ + H DG + F+ SW+ +R
Sbjct: 121 RLIP--AVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query: 176 GACHEAVTYKNLSESSIIF---PPQ--------NPSPNHHLSVMEKIWFREAKSKTRRFV 224
G VT + +++ PPQ P P +S ++ F
Sbjct: 179 GL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFK 235
Query: 225 FNAKAIASLRSECK--GERVSNPTRIEALSAFILKSVMLAPRSTANSRFVLHQAVNLRRL 282
+ I++L+++ K G +S + E L+ + + A + L+ A + R
Sbjct: 236 LTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 294
Query: 283 TEPRLSTFSVGNLFLFASA---AYNMEHA----AEMELHELVARMKQAVGSINREYLKIL 335
P L GN+ A+ A ++E A ++H+ +ARM +YL++
Sbjct: 295 LRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQ 354
Query: 336 HGDESFPKVCEYIKKIEEVSTHKNLNAIISSSWLKFGFNEVDFGWGNPIWSGISG 390
P + ++ T K N I +SW++ ++ DFGWG PI+ G G
Sbjct: 355 ------PDLKALVRG---AHTFKXPNLGI-TSWVRLPIHDADFGWGRPIFMGPGG 399
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 131/380 (34%), Gaps = 56/380 (14%)
Query: 41 ILFY--PMRNTHLKGTQISTQLKESLSKTLDRLYPFAGRVRDNLIINDYDE-------GV 91
ILFY P+ T I T LK+SLS TL P AG V + Y E V
Sbjct: 40 ILFYKLPISRPDFVQTIIPT-LKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSV 98
Query: 92 PHIETRVNTHLFEFLQNPPMELLDQCLPYPPFSY---QPNPDQVPQAAVQLNIFDCGGIA 148
I + + + P D P + P P A+Q+ +F GI+
Sbjct: 99 SVIFSESDXDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGIS 158
Query: 149 LGLCLSHKIIDGATTSGFLRSWAANSRGACHE---AVTYKNLSESSIIFPPQNPSPNHHL 205
+G H DGAT F+R+WA ++ E A + + S+I P
Sbjct: 159 IGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNG------- 211
Query: 206 SVMEKIWFREAKSK---------------TRRFVFNAKAIASLRSECKGER--VSNPTRI 248
V IW K K F+ I L++ R +++ T
Sbjct: 212 -VGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSF 270
Query: 249 EALSAFILKSVMLAPRSTA-----NSRFVLHQAVNLRRLTEPRLSTFSVGNLFLFASAAY 303
A++ ++ + +T N A + R P L GN + A
Sbjct: 271 TVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVART 330
Query: 304 NMEHAAEMELHELVARMKQAVGSINREYLKILHGDESFPKVCEYIKKIEEVSTHKNLNAI 363
A E + + +G R+ K DE + + K+ ++V ++L+
Sbjct: 331 RQVDLAGKEGFTIAVEL---IGEAIRKRXK----DEEWILSGSWFKEYDKVDAKRSLSVA 383
Query: 364 ISSSWLKFGFNEVDFGWGNP 383
S K DFGWG P
Sbjct: 384 GSP---KLDLYAADFGWGRP 400
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 41 ILFYPMRNTHLKGTQ-ISTQLKESLSKTLDRLYPFAGRV-------RDNLIINDYDEGVP 92
+ FY + T + T+ + +K SLS TL YPF G++ + I + V
Sbjct: 45 LFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVA 104
Query: 93 HIETRVNTHLFEFLQNPPMELLDQCLPYPPF----SYQPNPDQVPQAAVQLNIFDCGGIA 148
N L E N P D+ P + + ++P +VQ+ +F GIA
Sbjct: 105 VTFAECNLDLNELTGNHPRNC-DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIA 163
Query: 149 LGLCLSHKIIDGATTSGFLRSWAANSRGA 177
+G+ H + D +T FL++W + +R
Sbjct: 164 IGITNHHCLGDASTRFCFLKAWTSIARSG 192
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 41 ILFYPMRNTHLKGTQ-ISTQLKESLSKTLDRLYPFAGRV-------RDNLIINDYDEGVP 92
+ FY + T + T+ + +K SLS TL YPF G++ + I + V
Sbjct: 45 LFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVA 104
Query: 93 HIETRVNTHLFEFLQNPPMELLDQCLPYPPF----SYQPNPDQVPQAAVQLNIFDCGGIA 148
N L E N P D+ P + + ++P +VQ+ +F GIA
Sbjct: 105 VTFAECNLDLNELTGNHPRNC-DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIA 163
Query: 149 LGLCLSHKIIDGATTSGFLRSWAANSRGA 177
+G+ H + D +T FL++W + +R
Sbjct: 164 IGITNHHCLGDASTRFCFLKAWTSIARSG 192
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 158/401 (39%), Gaps = 56/401 (13%)
Query: 24 FKISLLDQLTP--TTFSPLILFYPMRNTHLKGTQISTQLKESLSKTLDRLYPF-AGRVRD 80
++ ++ Q P + ++ + L YP+ + T +ST L+E L K L + +P+ AG+V+
Sbjct: 14 IELDIIGQQPPLLSIYTQISLVYPVSDPSQYPTIVST-LEEGL-KRLSQTFPWVAGQVKT 71
Query: 81 NLI---------INDYDEG----VPHIETRVNTHLFEFLQNP--PMELLDQCLPYPPFSY 125
I I Y+E V + + E L+ P+E D+ + P +
Sbjct: 72 EGISEGNTGTSKIIPYEETPRLVVKDLRDDSSAPTIEGLRKAGFPLEXFDENVVAPRKTL 131
Query: 126 QPNP-----DQVPQAAVQLNIFDCGGIALGLCLSHKIIDGATTSGFLR--SWAANSRGAC 178
P D P +QLN F GG+ L + H D +R S A +
Sbjct: 132 AIGPGNGPNDPKPVLLLQLN-FIKGGLILTVNGQHGAXDXTGQDAIIRLLSKACRNESFT 190
Query: 179 HEAVTYKNLSESSIIFPPQN----PSPNHHLSVMEKIWFREAKSKTRR---FVFNAKAIA 231
E ++ NL +++ +N P +H ++ F F KA++
Sbjct: 191 EEEISAXNLDRKTVVPLLENYKVGPELDHQIAKPAPAGDAPPAPAKATWAFFSFTPKALS 250
Query: 232 SLRSECKGERVSNPTRI---EALSAFILKS---VMLAPRSTANSRFVLHQAVNLRRLTEP 285
L+ ++ + +ALSAFI +S V LA R A++ +AV+ R
Sbjct: 251 ELKDAATKTLDASSKFVSTDDALSAFIWQSTSRVRLA-RLDASTPTEFCRAVDXR----- 304
Query: 286 RLSTFSVGNLF--LFASAAYNMEHAAEMELHELVARMKQAVGSINREYLKILHGDESFPK 343
V + + L + Y+ AE+ L A + +N + L+ ++
Sbjct: 305 --GPXGVSSTYPGLLQNXTYHDSTVAEIANEPLGATASRLRSELNSDRLR--RRTQALAT 360
Query: 344 VCEYIKKIEEVSTHKNLN---AIISSSWLKFGFNEVDFGWG 381
+ VS + N +I SSW K G E DFG+G
Sbjct: 361 YXHGLPDKSSVSLTADANPSSSIXLSSWAKVGCWEYDFGFG 401
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 272 VLHQAVNLRRLTEPRLSTFSVGNLFLFASAAYNMEHAAEMELHELVARMKQAVGSINREY 331
VL A+N +R R+ +++G + L ELV+R K A G ++
Sbjct: 196 VLEGAINFQRDAFLRIDMYAMG-----------------LVLWELVSRCKAADGPVDEYM 238
Query: 332 LKILHGDESFPKVCEYIKKIEEVSTHKNLNAIISSSWLK 370
L P +++++EV HK + I WLK
Sbjct: 239 LPFEEEIGQHPS----LEELQEVVVHKKMRPTIKDHWLK 273
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 50 HLKGTQISTQLKESLSKTLDRLYPFAGRVRDNLIINDYDEGVPHIETRVNTHLFEFLQNP 109
H+ TQ L++ + T + + AG V ++ + Y + + I + L + +
Sbjct: 107 HITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQ-IAQITAQTGAKL---VVDA 162
Query: 110 PMELLDQCLPYPPFSYQPNPDQV 132
EL + LPY P +PN D++
Sbjct: 163 EKELAESVLPYHPLFIKPNKDEL 185
>pdb|3A1Z|A Chain A, Crystal Structure Of Juvenile Hormone Binding Protein From
S
pdb|3A1Z|B Chain B, Crystal Structure Of Juvenile Hormone Binding Protein From
S
pdb|3A1Z|C Chain C, Crystal Structure Of Juvenile Hormone Binding Protein From
S
pdb|3A1Z|D Chain D, Crystal Structure Of Juvenile Hormone Binding Protein From
S
pdb|2RQF|A Chain A, Solution Structure Of Juvenile Hormone Binding Protein
From Silkworm In Complex With Jh Iii
pdb|3AOS|A Chain A, Crystal Structure Of Juvenile Hormone Binding Protein From
Silkworm In Complex With Jh Ii
pdb|3AOS|B Chain B, Crystal Structure Of Juvenile Hormone Binding Protein From
Silkworm In Complex With Jh Ii
pdb|3AOT|A Chain A, Crystal Structure Of Juvenile Hormone Binding Protein From
Silkworm In Its Apo Form
Length = 227
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 29/126 (23%)
Query: 17 DVHLLKPFKISLLDQLTPTTFSPLILFYPMRNTHLKGTQIS-----TQLKESLSKTLDRL 71
D+ + P ++ LD + P+ +I F + T LK QIS T+ K L KT L
Sbjct: 38 DIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNITGLKNQQISDFQMDTKAKTVLLKTKADL 97
Query: 72 YPFA------------------------GRVRDNLIINDYDEGVPHIETRVNTHLFEFLQ 107
+ G VR + + D GV H E + T E +
Sbjct: 98 HIVGDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIG 157
Query: 108 NPPMEL 113
P + L
Sbjct: 158 EPKITL 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,286,475
Number of Sequences: 62578
Number of extensions: 482985
Number of successful extensions: 1200
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 21
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)