Query 044850
Match_columns 250
No_of_seqs 138 out of 1358
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 6.3E-28 1.4E-32 222.8 25.5 194 32-228 245-449 (455)
2 PRK10189 MATE family multidrug 100.0 7.9E-28 1.7E-32 223.5 26.1 200 26-227 253-467 (478)
3 PRK00187 multidrug efflux prot 99.9 2.3E-25 4.9E-30 206.4 25.7 202 31-234 239-460 (464)
4 PRK01766 multidrug efflux prot 99.9 1.7E-24 3.7E-29 199.8 25.8 195 32-228 243-448 (456)
5 PRK10367 DNA-damage-inducible 99.9 3.7E-23 8E-28 190.5 24.6 185 32-226 236-434 (441)
6 PRK09575 vmrA multidrug efflux 99.9 9.7E-23 2.1E-27 188.3 25.9 196 25-225 227-438 (453)
7 PRK10189 MATE family multidrug 99.9 3.4E-21 7.3E-26 179.2 24.4 187 31-220 32-235 (478)
8 PRK10367 DNA-damage-inducible 99.9 1.8E-20 4E-25 172.6 26.4 191 29-221 10-211 (441)
9 PRK00187 multidrug efflux prot 99.9 1.5E-20 3.2E-25 174.3 25.9 186 32-221 14-214 (464)
10 KOG1347 Uncharacterized membra 99.9 1.5E-22 3.2E-27 187.1 11.5 211 29-239 248-472 (473)
11 PRK09575 vmrA multidrug efflux 99.9 4.4E-20 9.5E-25 170.6 25.0 194 26-222 10-215 (453)
12 COG0534 NorM Na+-driven multid 99.9 1.5E-19 3.3E-24 167.1 25.5 195 26-223 15-222 (455)
13 PRK01766 multidrug efflux prot 99.8 5.9E-18 1.3E-22 156.3 26.9 188 32-222 16-218 (456)
14 PF01554 MatE: MatE; InterPro 99.8 4.1E-19 8.8E-24 141.1 8.6 151 36-188 1-162 (162)
15 TIGR00797 matE putative efflux 99.7 1.3E-15 2.7E-20 135.0 24.9 183 36-221 1-196 (342)
16 TIGR01695 mviN integral membra 99.6 9.4E-14 2E-18 129.4 24.6 186 32-222 227-428 (502)
17 TIGR02900 spore_V_B stage V sp 99.4 3.6E-11 7.7E-16 111.6 22.4 186 31-221 224-433 (488)
18 TIGR00797 matE putative efflux 99.4 2.8E-11 6.1E-16 107.1 15.5 125 27-153 211-341 (342)
19 PRK15099 O-antigen translocase 99.3 5.5E-10 1.2E-14 102.1 24.1 185 25-220 208-410 (416)
20 KOG1347 Uncharacterized membra 99.3 5.7E-10 1.2E-14 103.6 18.8 187 33-222 33-230 (473)
21 TIGR02900 spore_V_B stage V sp 99.1 2.7E-08 5.9E-13 92.3 22.3 184 33-222 4-204 (488)
22 PF03023 MVIN: MviN-like prote 99.1 1.2E-07 2.7E-12 87.8 25.1 185 33-222 203-403 (451)
23 TIGR01695 mviN integral membra 99.0 1.1E-07 2.5E-12 88.5 23.3 179 38-221 10-206 (502)
24 PRK15099 O-antigen translocase 98.8 1.8E-06 3.8E-11 79.0 22.3 166 48-221 22-196 (416)
25 COG0728 MviN Uncharacterized m 98.7 2.3E-05 5E-10 73.3 25.2 175 42-221 246-436 (518)
26 PF03023 MVIN: MviN-like prote 98.6 1.7E-05 3.6E-10 73.7 20.7 164 55-223 2-183 (451)
27 PRK10459 colanic acid exporter 98.5 9.4E-05 2E-09 69.0 23.3 180 32-219 207-402 (492)
28 COG2244 RfbX Membrane protein 98.3 0.0001 2.2E-09 68.5 20.3 167 32-204 217-394 (480)
29 PF07260 ANKH: Progressive ank 97.4 0.071 1.5E-06 46.9 21.7 136 28-168 11-150 (345)
30 PF04506 Rft-1: Rft protein; 97.2 0.038 8.1E-07 52.7 18.0 192 26-221 251-469 (549)
31 COG0728 MviN Uncharacterized m 97.0 0.31 6.6E-06 46.1 23.2 173 44-222 24-216 (518)
32 PF01943 Polysacc_synt: Polysa 96.1 0.69 1.5E-05 38.7 23.6 163 48-221 20-190 (273)
33 PRK10459 colanic acid exporter 96.0 1.3 2.8E-05 41.2 20.6 151 51-217 29-189 (492)
34 KOG2864 Nuclear division RFT1 95.9 0.51 1.1E-05 43.6 15.1 203 10-220 216-447 (530)
35 PF13440 Polysacc_synt_3: Poly 95.2 1.5 3.2E-05 36.3 21.6 156 48-219 5-170 (251)
36 PF14667 Polysacc_synt_C: Poly 92.6 1 2.2E-05 34.4 8.4 41 179-221 39-79 (146)
37 COG2244 RfbX Membrane protein 90.0 16 0.00034 33.8 18.8 80 48-129 27-110 (480)
38 PF01943 Polysacc_synt: Polysa 70.3 35 0.00076 28.1 8.6 61 32-93 209-271 (273)
39 PF13440 Polysacc_synt_3: Poly 69.4 30 0.00066 28.3 8.0 58 30-89 185-244 (251)
40 PF04505 Dispanin: Interferon- 65.1 44 0.00096 23.3 6.8 31 90-120 43-73 (82)
41 PF11683 DUF3278: Protein of u 64.7 60 0.0013 24.6 11.0 29 24-52 19-47 (129)
42 PF07125 DUF1378: Protein of u 64.0 18 0.00038 23.2 4.0 29 221-249 29-57 (59)
43 PRK09546 zntB zinc transporter 59.7 28 0.0006 30.8 6.2 42 181-224 273-323 (324)
44 PF14248 DUF4345: Domain of un 56.7 81 0.0018 23.5 14.1 63 104-166 1-63 (124)
45 TIGR00383 corA magnesium Mg(2+ 54.3 30 0.00065 30.3 5.5 41 182-224 268-317 (318)
46 PF11457 DUF3021: Protein of u 49.9 1.1E+02 0.0024 23.0 14.6 17 172-188 76-92 (136)
47 COG0598 CorA Mg2+ and Co2+ tra 43.4 39 0.00084 29.9 4.4 41 182-224 272-321 (322)
48 PRK11085 magnesium/nickel/coba 37.4 76 0.0016 28.2 5.3 41 182-224 266-315 (316)
49 COG1970 MscL Large-conductance 34.9 2.1E+02 0.0045 21.9 6.7 17 200-216 68-84 (130)
50 PF01102 Glycophorin_A: Glycop 32.0 66 0.0014 24.4 3.5 24 199-222 68-91 (122)
51 COG0170 SEC59 Dolichol kinase 29.9 67 0.0014 26.8 3.5 46 81-126 121-168 (216)
52 COG3346 Uncharacterized conser 25.9 1.2E+02 0.0027 26.0 4.4 41 208-248 24-64 (252)
53 PRK14766 lipoprotein signal pe 25.3 1.5E+02 0.0032 24.6 4.7 20 219-238 181-200 (201)
54 TIGR03141 cytochro_ccmD heme e 24.7 1.7E+02 0.0037 17.7 4.6 22 199-220 7-28 (45)
55 COG4327 Predicted membrane pro 23.9 1.6E+02 0.0035 21.2 4.0 44 199-242 53-98 (101)
56 PF03916 NrfD: Polysulphide re 23.8 3E+02 0.0065 23.9 6.7 41 79-119 18-62 (313)
57 COG1230 CzcD Co/Zn/Cd efflux s 23.6 5.1E+02 0.011 22.8 9.8 60 79-138 56-119 (296)
58 TIGR00328 flhB flagellar biosy 22.8 5.7E+02 0.012 23.0 13.6 28 93-120 13-40 (347)
59 COG3462 Predicted membrane pro 22.0 2.3E+02 0.005 21.0 4.6 22 196-217 45-66 (117)
60 PRK13954 mscL large-conductanc 21.4 3.6E+02 0.0079 20.3 6.7 17 199-215 64-80 (119)
61 PRK14472 F0F1 ATP synthase sub 21.1 1.3E+02 0.0029 23.8 3.7 35 194-228 10-44 (175)
62 COG3949 Uncharacterized membra 21.0 6.2E+02 0.013 22.8 13.1 57 98-154 203-259 (349)
63 PF05393 Hum_adeno_E3A: Human 21.0 1.1E+02 0.0023 21.9 2.5 25 194-218 29-53 (94)
64 PRK13953 mscL large-conductanc 20.9 3.8E+02 0.0083 20.4 7.1 14 199-212 67-80 (125)
65 PRK11469 hypothetical protein; 20.9 4.6E+02 0.0099 21.2 8.9 39 80-118 6-48 (188)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.96 E-value=6.3e-28 Score=222.79 Aligned_cols=194 Identities=26% Similarity=0.344 Sum_probs=180.1
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
+.+.|.++....+..++.+.+.+++++| ++++|||+++.++.++.++++.|+++|+ ++||++||||++|+|+..+.
T Consensus 245 ~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~ 322 (455)
T COG0534 245 RLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARL 322 (455)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4555555555566667888899999999 5689999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV 180 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~ 180 (250)
++.++..++++.+++++++++++.++|++|+|+.+.+.+++++.++++++++++.+..| .+++.++.++|+
T Consensus 323 ~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~ 402 (455)
T COG0534 323 ALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWG 402 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888766 899999999999
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 044850 181 FGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQA 228 (250)
Q Consensus 181 i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~ 228 (250)
+++|+.|++.+.. +|..|+|+++..++.++.++..+++++.+|+++.
T Consensus 403 ~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (455)
T COG0534 403 FRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKA 449 (455)
T ss_pred HHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999998765 9999999999999999999999999999999886
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.96 E-value=7.9e-28 Score=223.52 Aligned_cols=200 Identities=15% Similarity=0.129 Sum_probs=182.2
Q ss_pred chhHHHHHHhHhHHHHHHHHHHHHH----HHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCC
Q 044850 26 LDEEKKEESLREGNVALFFSGSEEL----LTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGK 99 (250)
Q Consensus 26 ~~~~~~~~~l~~g~~~~l~~~~~~i----~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~ 99 (250)
+|....+..++.|+|..+|...+.+ .+.+++++| +.++||++++.++.++.+++..|+++|+ ++||++||||
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~ 330 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQ 330 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3555556777888888777766554 455678899 5689999999999999999999999999 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HH
Q 044850 100 LKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LR 170 (250)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~ 170 (250)
++|+|+..+.+..++.++++..+++++++++++.++|++|+|+++.+..++++.++++++++++.+..+ .+
T Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~ 410 (478)
T PRK10189 331 IAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYA 410 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887665 88
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 044850 171 AYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQ 227 (250)
Q Consensus 171 ~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~ 227 (250)
+.+++.++|++++|+.|++.+..++|+.|+|++..+++.+++++..+++++++|+++
T Consensus 411 ~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 411 MWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999999999999999988888999999999999999999999999999999984
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.95 E-value=2.3e-25 Score=206.39 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=175.2
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850 31 KEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVK 108 (250)
Q Consensus 31 ~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~ 108 (250)
.+.++|.+++..++...+.+.+.+++++| +.++||++++.++..+.+++..|+++|+ ++||++|+||++|++++.+
T Consensus 239 l~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~ 316 (464)
T PRK00187 239 WRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGR 316 (464)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555555656667777888899999999 5689999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHhHhhhCC--cH---HHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHH
Q 044850 109 AVIFLANSESMIVIATLLNSRHVFFYVLSN--TK---EVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVD 174 (250)
Q Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~--~~---ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~ 174 (250)
.++.++.+++++.+++++++++++.++|++ |+ |+.+.+..++++.+.++++++++.++++ .++.++
T Consensus 317 ~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~ 396 (464)
T PRK00187 317 VGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIG 396 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHH
Confidence 999999999999999999999999999974 44 7899999999999999999998887765 899999
Q ss_pred HHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh--ccHHHHH--HHHHhh
Q 044850 175 LGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR--TNWEKQA--RERILE 234 (250)
Q Consensus 175 ~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~--~~W~~~~--~~r~~~ 234 (250)
+.+.|++++|+.|++.+++++|+.|+|+++.+++++.+++...+++. .+|++++ ||.++-
T Consensus 397 ~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (464)
T PRK00187 397 LACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRKARASEAVAL 460 (464)
T ss_pred HHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 99999999999999998888999999999999999998887766643 2333333 555543
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.94 E-value=1.7e-24 Score=199.81 Aligned_cols=195 Identities=21% Similarity=0.253 Sum_probs=176.0
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
+.++|..+...++...+.+.+.+++++| +.++||++++.++.++.++++.|++.|. ++||++|+||++++|+..+.
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~ 320 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYI 320 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3444555555666666777888899999 4579999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV 180 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~ 180 (250)
++.++..++++.+++++.+++++.++|++|+|+.+.+..++++..++.++++++.+.++ .++.++..+.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~ 400 (456)
T PRK01766 321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV 400 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887766 889999999999
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 044850 181 FGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQA 228 (250)
Q Consensus 181 i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~ 228 (250)
+++|..|++.+.+++|+.|+|+++.+++++.+++..+++++.+|+...
T Consensus 401 ~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (456)
T PRK01766 401 LGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQPSA 448 (456)
T ss_pred HHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999887889999999999999999999999998888877543
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.92 E-value=3.7e-23 Score=190.52 Aligned_cols=185 Identities=13% Similarity=0.063 Sum_probs=153.1
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
+.+.|.+++...+..++.+.+.+++++| +.++|||+++.++.++.+++..|+++|+ ++||++|+||++|+|+..+.
T Consensus 236 ~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~ 313 (441)
T PRK10367 236 ALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRA 313 (441)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455555555666677888899999999 4589999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHH-------HHHH-HHHhhh----HHHHHHHHH
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVV-------LDSL-KTVLSA----LRAYVDLGT 177 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~-------~~~i-~~~~~g----~~~~~~~~~ 177 (250)
+..++.+++++.+++++.+++.+.++|++|+|+++.+.+++++.++..+ ++++ +...+| .++.++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~ 393 (441)
T PRK10367 314 ACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAG 393 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875422 2332 111221 777888887
Q ss_pred HHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 044850 178 YYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEK 226 (250)
Q Consensus 178 ~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~ 226 (250)
.|+..++. +.+|+.|+|++..+++.++++++.++++|. |+|
T Consensus 394 ~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 394 FALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 77432221 257999999999999999999998877765 865
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=9.7e-23 Score=188.28 Aligned_cols=196 Identities=12% Similarity=0.133 Sum_probs=166.0
Q ss_pred cchhHHHHHHhHhHHHHHHHHHHH----HHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCC
Q 044850 25 TLDEEKKEESLREGNVALFFSGSE----ELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAG 98 (250)
Q Consensus 25 ~~~~~~~~~~l~~g~~~~l~~~~~----~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag 98 (250)
++|....+..++.|.|..++...+ .+.+.+.+++|+ +.++|+++++.++..+.+++..|+++|+ ++||++|||
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 455555566778888887776554 444556778884 3579999999999999999999999999 999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 044850 99 KLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSN-TKEVVDHVRTMATLMCLSVVLDSLKTVLSA--------- 168 (250)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~-~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g--------- 168 (250)
|+||+|+..+.++.+++.++++.+++++.+++++.++|++ |+|+++.+..|+++.++++++++++.+..+
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 9999999999999999999999999999999999999995 899999999999999999999998876654
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHH
Q 044850 169 LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWE 225 (250)
Q Consensus 169 ~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~ 225 (250)
.++..+..+ +++.+|..|++.. .+|+.|+|+++.+++++..++..+++++ +|+
T Consensus 386 ~~~~~~~~~-~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 386 KALFISIGN-MLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHHHHHHHh-HHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 677777654 5678999988754 3799999999999999998888776654 444
No 7
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=3.4e-21 Score=179.16 Aligned_cols=187 Identities=12% Similarity=0.082 Sum_probs=161.1
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850 31 KEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVK 108 (250)
Q Consensus 31 ~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~ 108 (250)
.+.++|..+.+.++.....+++.+++++| +.++||++++.++..+.+.+..|+++|+ ++||++|+||++|++++.+
T Consensus 32 l~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~ 109 (478)
T PRK10189 32 TPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAAR 109 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34555555555566666778889999999 5689999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHhHhhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850 109 AVIFLANSESMIVIATLLNSRHVFFYVLS--NTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT 177 (250)
Q Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~--~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~ 177 (250)
.++.+++.++++.+++.+++++++.++|+ .|+|+.+.+.+|+++..++.++.++..++++ .++.+++.
T Consensus 110 ~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~- 188 (478)
T PRK10189 110 QSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGG- 188 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHH-
Confidence 99999999999999999999999999995 7999999999999999999999887766554 67777766
Q ss_pred HHHhhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 044850 178 YYVFGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITN 220 (250)
Q Consensus 178 ~~~i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~ 220 (250)
.+++.+++.+++.+. +++|+.|+|+|+.+++++..++..+++.
T Consensus 189 ~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 189 MNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888764 3789999999999999999888766554
No 8
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=1.8e-20 Score=172.64 Aligned_cols=191 Identities=11% Similarity=0.041 Sum_probs=168.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHH
Q 044850 29 EKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106 (250)
Q Consensus 29 ~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~ 106 (250)
+..+...|..+.+.++.....+++.+++++|. ++++||.+++.++.++.+.+..|++.++ ++||++|+||++|+++.
T Consensus 10 ~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~ 88 (441)
T PRK10367 10 ALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARA 88 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567778888888888888899999999953 5579999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT 177 (250)
Q Consensus 107 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~ 177 (250)
.+.++.++.+.+++..++...+.+++.++++.|+|+.+.+.+|+++..++.++..+..++++ .++..+.++
T Consensus 89 ~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~ 168 (441)
T PRK10367 89 LVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVG 168 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999888777665544 778888777
Q ss_pred HHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850 178 YYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 178 ~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
. ++.++++|++.+.+++|+.|+|+|+.+++++..++..++++|
T Consensus 169 ~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 169 N-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred H-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 678999999988889999999999999999998887776654
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1.5e-20 Score=174.32 Aligned_cols=186 Identities=15% Similarity=-0.014 Sum_probs=158.8
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
+.++|..+....+.....+++.+++++| ++++||++++.++.++.+++..|+++|+ ++||++|+||++|++++.+.
T Consensus 14 ~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~ 91 (464)
T PRK00187 14 RLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQA 91 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4566666666677777888899999999 5689999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV 180 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~ 180 (250)
++.++++++++..++.+ +.+++.++|+.|+|+.+.+.+|+++..++.++.++...+++ .+++.++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~- 169 (464)
T PRK00187 92 GLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAV- 169 (464)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-
Confidence 99999999998887766 56889999999999999999999999998888777666544 66777766554
Q ss_pred hhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850 181 FGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 181 i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
+.++++|++.+. +++|+.|+|+|++++++...++..+++++
T Consensus 170 ~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 170 ANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 488999888764 25899999999999998888777666654
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.88 E-value=1.5e-22 Score=187.09 Aligned_cols=211 Identities=35% Similarity=0.487 Sum_probs=197.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHH
Q 044850 29 EKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106 (250)
Q Consensus 29 ~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~ 106 (250)
...+..+|.+++.++|+|.+++..+..+.+++.+.++++.+|+.++....++++.|++.|+ ++++.+|+||++++|..
T Consensus 248 ~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~ 327 (473)
T KOG1347|consen 248 PFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVS 327 (473)
T ss_pred HHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhH
Confidence 4457889999999999999999999999999977899999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT 177 (250)
Q Consensus 107 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~ 177 (250)
.+.+...++..+...+..++.+++.+..+|++|+|+.+...+..++++.+.+.++.+.+..| ++.++|...
T Consensus 328 ~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~ 407 (473)
T KOG1347|consen 328 AKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVA 407 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999887 888999999
Q ss_pred HHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHHH---HHHHhhccCCC
Q 044850 178 YYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQA---RERILEERFSP 239 (250)
Q Consensus 178 ~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~---~~r~~~~~~~~ 239 (250)
++++++|+...+.+..++|+.|+|.++..+..+....+.....+.||+++. ++|...+.+.+
T Consensus 408 yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 408 YYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred eeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 999999999999988899999999999999888888888888899999998 66666665543
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=4.4e-20 Score=170.60 Aligned_cols=194 Identities=10% Similarity=-0.015 Sum_probs=167.9
Q ss_pred chhHHHHHHhHhHHHHHHHHHHHHHHHHHhhcC-CCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHH
Q 044850 26 LDEEKKEESLREGNVALFFSGSEELLTLLSGFL-PNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKA 102 (250)
Q Consensus 26 ~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~-G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~ 102 (250)
..++..+..+|..+.+..+.....+++.+++++ | ++++|+++++.++.++.+.+..|++.|. ++||++|+||+||
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 334445566777777777777788899999996 7 5689999999999999999999998888 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHH
Q 044850 103 ASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYV 173 (250)
Q Consensus 103 a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~ 173 (250)
+++..+.++.++.+++++.+++.+.+++++..+|+.|+|+.+.+.+|+++..++.++.++....++ .++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888776654433 67777
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 174 DLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 174 ~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
+..+. ++.++++|++.+.+++|+.|+|+++.+++++..++.+++++++
T Consensus 168 ~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 77664 7789999999888889999999999999999998877776543
No 12
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=1.5e-19 Score=167.11 Aligned_cols=195 Identities=19% Similarity=0.169 Sum_probs=171.5
Q ss_pred chhHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHH
Q 044850 26 LDEEKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAA 103 (250)
Q Consensus 26 ~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a 103 (250)
..+...+...|+-+.+..+.....+++++++++| ++++||.++++++..+.+.+..|++.|+ +++|++||||++++
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence 3344445666666666677777888999999999 6799999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHH
Q 044850 104 SVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVD 174 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~ 174 (250)
++..+.++.+++.++++.+++.+.+++++..+++.++|+.+.+.+|+++...+.++..+..++++ .+++++
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~ 172 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL 172 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888776655 677777
Q ss_pred HHHHHHhhHHHHHHHHHH-hC-CCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 044850 175 LGTYYVFGIPVAAALGFL-FK-LRGPAPWIGLQAGAFLQTILLFIITNRTN 223 (250)
Q Consensus 175 ~~~~~~i~ipl~~ll~~~-~~-~g~~G~w~a~~~~~~~~~i~~~~~~~~~~ 223 (250)
.++. +..+.++|++.+. ++ +|+.|+.+|+.+++++..++.+++++|.+
T Consensus 173 ~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 173 LLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6655 4677888998887 46 99999999999999999999999888765
No 13
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.83 E-value=5.9e-18 Score=156.29 Aligned_cols=188 Identities=15% Similarity=0.111 Sum_probs=161.4
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
+.+.|..+....++....+++.+++++| +.++||++++.++..+.+.+..|++.|. ++||++|+||++++++..+.
T Consensus 16 ~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~ 93 (456)
T PRK01766 16 ALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQ 93 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4556666666666667778889999999 5589999999999988889999999988 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHH
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYV 180 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~ 180 (250)
++.+++.++++++++++++++++.++|+.|+|+.+.+..|+++..++.++.++..++++ .++..+.++. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~-i 172 (456)
T PRK01766 94 GLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGL-L 172 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999998888877666554 6677776665 5
Q ss_pred hhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 181 FGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 181 i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
+.+++++++.+. +.+|+.|+|+++.+++++..++..++++|.
T Consensus 173 vni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 173 INIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 688888887753 468999999999999999999887777654
No 14
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.78 E-value=4.1e-19 Score=141.13 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=142.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHH
Q 044850 36 REGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFL 113 (250)
Q Consensus 36 ~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~ 113 (250)
|+.++..++...+.+.+.+++++| ++++|+++++.++.++...+..|+++|. ++||++|+||++|+++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 677888899999999999999998 5689999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHH
Q 044850 114 ANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIP 184 (250)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ip 184 (250)
+++++++.+++.+.+++++.++|++|+|+.+.+.+|+++..++.++.++....++ .+++.++.+.|++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988877665 7889999999999999
Q ss_pred HHHH
Q 044850 185 VAAA 188 (250)
Q Consensus 185 l~~l 188 (250)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 15
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.74 E-value=1.3e-15 Score=135.00 Aligned_cols=183 Identities=19% Similarity=0.162 Sum_probs=155.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHH
Q 044850 36 REGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFL 113 (250)
Q Consensus 36 ~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~ 113 (250)
|..+..........+.+.+++++| +.++++++++.++..+...+..|++++. .+++++|+||++++++..+.+..+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 345566667777788899999999 4579999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHH
Q 044850 114 ANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIP 184 (250)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ip 184 (250)
...++++.+++.+++++++..+|+.|++..+.+..++++..+..++.+++.++.+ .++..+.++. ++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 9999999999999999999999998999999999999999999998887665544 5555555544 45667
Q ss_pred HHHHHHH-HhC-CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850 185 VAAALGF-LFK-LRGPAPWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 185 l~~ll~~-~~~-~g~~G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
..+++.+ .++ +|..|+++++.+++++..++..++++|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777665 456 789999999999999998887766654
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.64 E-value=9.4e-14 Score=129.36 Aligned_cols=186 Identities=17% Similarity=0.048 Sum_probs=151.2
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHH-hHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNT-IPDGLGAAA--RFSNTLGAGKLKAASVAVK 108 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~-~~~gl~~a~--lvg~~~Gag~~~~a~~~~~ 108 (250)
+.+.|..+....+.....+...+.+.+|. .++++++.+.++..+... +..+++++. .+||++|+||++++|+..+
T Consensus 227 ~~~~p~~~~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~ 304 (502)
T TIGR01695 227 KLFLPTTLGSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLN 304 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444444555666677777777774 478999999999988765 567889888 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHhHhhhCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHH
Q 044850 109 AVIFLANSESMIVIATLLNSRHVFFYVLSN----TKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDL 175 (250)
Q Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~----~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~ 175 (250)
+++.....+++..++.++.+++++..+|.. |+|..+.+..++++.++..++.+++.++.+ .++..+.
T Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~ 384 (502)
T TIGR01695 305 QGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSV 384 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHH
Confidence 999999999999999999999999999865 678888899999999999999888776554 5666666
Q ss_pred HHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 176 GTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 176 ~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
... ++.+|+.+++.. .+|..|+|+++.+++.+..++..++++|.
T Consensus 385 ~~~-~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 385 ISV-VLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 567888877753 57999999999999999998887777653
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.43 E-value=3.6e-11 Score=111.59 Aligned_cols=186 Identities=13% Similarity=0.002 Sum_probs=136.5
Q ss_pred HHHHhHhHHHHHH----HHHHHHHHHHHhhcC----CCc-hhhhhHH----HHHHHHHHHHHHhHHhHHHHH--HHHHHh
Q 044850 31 KEESLREGNVALF----FSGSEELLTLLSGFL----PNP-KLETSAP----SVCLATVYTLNTIPDGLGAAA--RFSNTL 95 (250)
Q Consensus 31 ~~~~l~~g~~~~l----~~~~~~i~~~~~~~~----G~~-~~avAa~----~i~~~i~~~~~~~~~gl~~a~--lvg~~~ 95 (250)
.+..++.+.|..+ ......+++.++++. |.. ..+.+.+ +++.++..+...+..+++.+. .+++++
T Consensus 224 ~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~ 303 (488)
T TIGR02900 224 LFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAM 303 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554 444556666666543 210 1122222 234456666666778888888 999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------
Q 044850 96 GAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA------- 168 (250)
Q Consensus 96 Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g------- 168 (250)
|+||.+++++..++++..+..+++..++.+..+++++.++|..+++ +..++++.+...++.+++.+.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 379 (488)
T TIGR02900 304 AKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGK 379 (488)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999876544 46678888888888877665443
Q ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850 169 --LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 169 --~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
..+..+.... ++.+++.+++...+.+|..|+|+++.+++.+..++..++.+|
T Consensus 380 ~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 380 QKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666654 567777777654467899999999999999999888887765
No 18
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.35 E-value=2.8e-11 Score=107.14 Aligned_cols=125 Identities=23% Similarity=0.209 Sum_probs=107.9
Q ss_pred hhHHHHHHhHhHHHHH----HHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCCh
Q 044850 27 DEEKKEESLREGNVAL----FFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKL 100 (250)
Q Consensus 27 ~~~~~~~~l~~g~~~~----l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~ 100 (250)
+....+..++.++|.+ .....+.+.+.+++.+| +.++++|+++.++.++...+..+++++. .+++++|+||.
T Consensus 211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (342)
T TIGR00797 211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDP 288 (342)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3333445555555554 44555667777888898 4589999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHH
Q 044850 101 KAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLM 153 (250)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~ 153 (250)
+++++..++++.....+++...+.++++++++.++|++|+++.+.+..++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 289 KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998875
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=99.35 E-value=5.5e-10 Score=102.06 Aligned_cols=185 Identities=11% Similarity=-0.068 Sum_probs=134.2
Q ss_pred cchhHHHHHHhHhHHHHHHHH----HHHHHHHHHhh-cCCCchhhhhHHHHHHHHHH-HHHHhHHhHHHHH--HHHHHhc
Q 044850 25 TLDEEKKEESLREGNVALFFS----GSEELLTLLSG-FLPNPKLETSAPSVCLATVY-TLNTIPDGLGAAA--RFSNTLG 96 (250)
Q Consensus 25 ~~~~~~~~~~l~~g~~~~l~~----~~~~i~~~~~~-~~G~~~~avAa~~i~~~i~~-~~~~~~~gl~~a~--lvg~~~G 96 (250)
++|....+..++.|.|...+. ......+.+++ .+| +.+++.|+++.++.. +...+..+++++. .++|+
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~-- 283 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL-- 283 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 445554456667777765554 34555666674 888 558999999999977 4588999999999 99994
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcH--HHHHHHHHHHHHHHHHHH------HHHHHHHhhh
Q 044850 97 AGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTK--EVVDHVRTMATLMCLSVV------LDSLKTVLSA 168 (250)
Q Consensus 97 ag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~--ev~~~~~~~l~i~~~~~~------~~~i~~~~~g 168 (250)
+|.+|.++..++.......+++..++.+++++++++++|..|+ +..+ ++++.++..+ +.+......+
T Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~----~~~~l~~~~~l~~~~~~~g~~~~~~~ 358 (416)
T PRK15099 284 -TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRD----LFAWQLVGDVLKVGAYVFGYLVIAKA 358 (416)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999997665 3333 3333333322 2233333333
Q ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 044850 169 --LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITN 220 (250)
Q Consensus 169 --~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~ 220 (250)
.....+.....++.+|+.+++. +.+|..|+++++.+++.+..++......
T Consensus 359 ~~~~~~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 359 SLRFYILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555667778887765 4679999999999999999987765554
No 20
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.25 E-value=5.7e-10 Score=103.62 Aligned_cols=187 Identities=17% Similarity=0.076 Sum_probs=150.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHH-HHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 33 ESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYT-LNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 33 ~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~-~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
...|..+....+.....+.+.+++++| +..+|+.+++++..+. .+.+..|++.+. ++||++|++++++...+.++
T Consensus 33 ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqr 110 (473)
T KOG1347|consen 33 LALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTALGVYLQR 110 (473)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchhhHHHHH
Confidence 344444444566666778889999999 4589999999877776 588999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----hhh----HHHHHHHHHHHHh
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV----LSA----LRAYVDLGTYYVF 181 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~----~~g----~~~~~~~~~~~~i 181 (250)
+..+-...++....+ +.+.+++...+++|+++...+..|.+...+..+..+.... +++ .+.........++
T Consensus 111 s~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~l 189 (473)
T KOG1347|consen 111 SGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVL 189 (473)
T ss_pred HHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 999999999988855 5567999999999999999999998887766655554332 223 3433333344467
Q ss_pred hHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 182 GIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 182 ~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
++|+.|++++..++|..|..++..+++++...+...+....
T Consensus 190 hi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 190 HILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 89999999999999999999999999999999988877643
No 21
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.10 E-value=2.7e-08 Score=92.31 Aligned_cols=184 Identities=13% Similarity=0.148 Sum_probs=124.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHhhc-CCCchhhhhHHHHHHHHHHHHHHhH-HhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850 33 ESLREGNVALFFSGSEELLTLLSGF-LPNPKLETSAPSVCLATVYTLNTIP-DGLGAAA--RFSNTLGAGKLKAASVAVK 108 (250)
Q Consensus 33 ~~l~~g~~~~l~~~~~~i~~~~~~~-~G~~~~avAa~~i~~~i~~~~~~~~-~gl~~a~--lvg~~~Gag~~~~a~~~~~ 108 (250)
...+..+....+.....+.+.+.++ +| +++.++++.+.++..+...+. .|++++. .++|+.|+||++++++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 4 GTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 3455556666666655666777776 58 457899999999888877765 5899888 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----hhh-----HHHHHHHHHHH
Q 044850 109 AVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTV----LSA-----LRAYVDLGTYY 179 (250)
Q Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~----~~g-----~~~~~~~~~~~ 179 (250)
.+..+++..+++.+++++.+.+.+...+.+|++.. .++++..+..++.++..+ +++ ..+..+.....
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 99999999999999999999999888776666543 345555555555554433 333 33333333321
Q ss_pred H---hhHHHHHHH-HHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 180 V---FGIPVAAAL-GFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 180 ~---i~ipl~~ll-~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
+ ..+.+.+.+ .+..+.++.|..+++.++.++..++..++++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111 111234566777788888888888776655543
No 22
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.07 E-value=1.2e-07 Score=87.83 Aligned_cols=185 Identities=13% Similarity=0.064 Sum_probs=144.5
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHH-HhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 33 ESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 33 ~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~-~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
...|.-+..........+...+++.++.+ ++++.+.+.++.++.. .+..++++.. ..+++.-+||.++.++..++
T Consensus 203 ~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~ 280 (451)
T PF03023_consen 203 LAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRK 280 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33344333344444555667778888854 7999999999999876 4566888888 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHH
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLS----NTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLG 176 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~----~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~ 176 (250)
++...+.+++..++.+..++++++++.- -|+|-.+...+.+.+++++.++.+++.++.- .++..+..
T Consensus 281 ~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~ 360 (451)
T PF03023_consen 281 ALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVI 360 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHH
Confidence 9999999999999999999999998764 3666688888999999999999998766543 44554444
Q ss_pred HHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 177 TYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 177 ~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
.. ++.+.+.+++ .+.+|..|+.+++.++.++.+++..++++|.
T Consensus 361 ~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 361 SV-VLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 4555566544 3468999999999999999999988877653
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.03 E-value=1.1e-07 Score=88.53 Aligned_cols=179 Identities=15% Similarity=0.030 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCCchhhh-hHHHHHHHHHHHHHHhHHhHHHHH-HHHHHhcCCCh-HHHHHHHHHHHHH
Q 044850 38 GNVALFFSGSEELLTLLSGF-LPNPKLET-SAPSVCLATVYTLNTIPDGLGAAA-RFSNTLGAGKL-KAASVAVKAVIFL 113 (250)
Q Consensus 38 g~~~~l~~~~~~i~~~~~~~-~G~~~~av-Aa~~i~~~i~~~~~~~~~gl~~a~-lvg~~~Gag~~-~~a~~~~~~~~~~ 113 (250)
.+...++.....+...++++ +|+ .+. ++++++.++..+...+..+.|.+. .+.+..|+++. +++++....+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~lG~--~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (502)
T TIGR01695 10 SLGTLFSRITGFVRDAIIASAFGA--GLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEKEARRAFANTVTT 87 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--ChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344444444466666777 784 467 799999998877766655233333 66666666665 5888877777776
Q ss_pred HHHHHH-HHHHHHHhchhHhHhhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHh
Q 044850 114 ANSESM-IVIATLLNSRHVFFYVL--SNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVF 181 (250)
Q Consensus 114 ~~~~~i-~~~~~~~~~~~~i~~lf--~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i 181 (250)
....+. +..++.+++.+++..++ +.|++..+.+..|+++..++.++.++..+.++ .++..+.....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~- 166 (502)
T TIGR01695 88 LLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIG- 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHH-
Confidence 665544 45677888999999988 45778889999999999999999888776655 566666665532
Q ss_pred hHHHHHHHHHHhCCCchhHH--HHHHHHHHHHHHHHHHHHhh
Q 044850 182 GIPVAAALGFLFKLRGPAPW--IGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 182 ~ipl~~ll~~~~~~g~~G~w--~a~~~~~~~~~i~~~~~~~~ 221 (250)
.+. .++...+++|..|.. +++.++..+..++..++++|
T Consensus 167 ~i~--~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 167 VIL--SLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHH--HHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222334678999988 99999999888887766654
No 24
>PRK15099 O-antigen translocase; Provisional
Probab=98.81 E-value=1.8e-06 Score=78.96 Aligned_cols=166 Identities=12% Similarity=0.034 Sum_probs=107.7
Q ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHh-HHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850 48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTI-PDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIAT 124 (250)
Q Consensus 48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~-~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~ 124 (250)
+...-++...+| +.+.+..+....+..+...+ ..|+++|. .++|+ ++|.+++++....+..+++..+++.+++
T Consensus 22 ~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~ 97 (416)
T PRK15099 22 LLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALV 97 (416)
T ss_pred HHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 434445566667 44677777777766655554 66666666 78888 7899999999999999999999999999
Q ss_pred HHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh-----HHHHHHHHHHHHhhHHHHHHHHHHhCCCch
Q 044850 125 LLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSV-VLDSLKTVLSA-----LRAYVDLGTYYVFGIPVAAALGFLFKLRGP 198 (250)
Q Consensus 125 ~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~-~~~~i~~~~~g-----~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~ 198 (250)
.+.+.+++...+..+++. .....++.+..+.. +....+.++++ .++..+.... ++.+.+ +++.+. ..|+.
T Consensus 98 ~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~-~~Gv~ 173 (416)
T PRK15099 98 FLLAAAPISQGLFGHTDY-QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYR-LGGYE 173 (416)
T ss_pred HHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHH-Hhcch
Confidence 999999998888777763 33333333322222 22233444444 3333333332 222222 223222 23999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 044850 199 APWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 199 G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
|..+++.+++.+..++.+++++|
T Consensus 174 Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 174 GALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776655543
No 25
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.67 E-value=2.3e-05 Score=73.32 Aligned_cols=175 Identities=15% Similarity=0.036 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHH-HhHHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 044850 42 LFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSES 118 (250)
Q Consensus 42 ~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~-~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~ 118 (250)
........+.+.+++.+.++ +++.+..+.++.++-. .+..++++.. ..+++..++|.++.++..+.++.++..++
T Consensus 246 sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~ 323 (518)
T COG0728 246 SISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLT 323 (518)
T ss_pred HHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 34444556778888888754 6888888888888776 5666777777 99999999999999999999999999999
Q ss_pred HHHHHHHHhchhHhHhhhC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--------HHHHHHHHHHHHhhHHH
Q 044850 119 MIVIATLLNSRHVFFYVLS----NTKEVVDHVRTMATLMCLSVVLDSLKTVLS-A--------LRAYVDLGTYYVFGIPV 185 (250)
Q Consensus 119 i~~~~~~~~~~~~i~~lf~----~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~-g--------~~~~~~~~~~~~i~ipl 185 (250)
+..++.+..++++++++.- -+++=.....+.+..++++.++.++.-++. + .|+.+.++.. ++.+-+
T Consensus 324 lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l 402 (518)
T COG0728 324 LPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILL 402 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHH
Confidence 9999999999999998763 255556777888899998888887754432 2 5555554443 334445
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850 186 AAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 186 ~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
++.+ .+.++..|+.+++.++.++.+.++++.++|
T Consensus 403 ~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k 436 (518)
T COG0728 403 NLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRK 436 (518)
T ss_pred HHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5333 356788899999999988888888777765
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.55 E-value=1.7e-05 Score=73.69 Aligned_cols=164 Identities=18% Similarity=0.128 Sum_probs=125.8
Q ss_pred hhcCCCchhhhhHHHHHHHHHHHHHHhHH-h-HHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 044850 55 SGFLPNPKLETSAPSVCLATVYTLNTIPD-G-LGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRH 130 (250)
Q Consensus 55 ~~~~G~~~~avAa~~i~~~i~~~~~~~~~-g-l~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~ 130 (250)
+..+|++ ....|+.++.++-.+...... | ++++. ...+.. +++.+++++..+.........++.++++.+++++
T Consensus 2 A~~fG~s-~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~ 79 (451)
T PF03023_consen 2 AYFFGAS-AEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAP 79 (451)
T ss_pred cHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456764 356789999999999986654 3 56666 777777 8999999999999999999999999999999999
Q ss_pred HhHhhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHHHHHHHHHHhCCC---
Q 044850 131 VFFYVLS--NTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLR--- 196 (250)
Q Consensus 131 ~i~~lf~--~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ipl~~ll~~~~~~g--- 196 (250)
+++.++. .|++..+.+.+.+++..++.++.++..++.+ .+.......+..+ +. .++......|
T Consensus 80 ~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~-I~--~~~~~~~~~~~~~ 156 (451)
T PF03023_consen 80 PIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSI-IL--SLLLLSNSWGQEN 156 (451)
T ss_pred HHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HH--HHHHHHHhcCchH
Confidence 9999995 5789999999999999999999998877766 4444444433221 11 1222233456
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcc
Q 044850 197 GPAPWIGLQAGAFLQTILLFIITNRTN 223 (250)
Q Consensus 197 ~~G~w~a~~~~~~~~~i~~~~~~~~~~ 223 (250)
..++.+|..++..+..++.+...+|..
T Consensus 157 i~~la~g~~~g~~~~~l~~l~~~~~~~ 183 (451)
T PF03023_consen 157 IYALAWGVLIGAIIQFLIQLPYLRRFG 183 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 778889999999999988888777643
No 27
>PRK10459 colanic acid exporter; Provisional
Probab=98.46 E-value=9.4e-05 Score=68.98 Aligned_cols=180 Identities=13% Similarity=0.084 Sum_probs=119.6
Q ss_pred HHHhHhHHHHHHHH----HHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHH-hHHHHH--HHHHHhcCCChHHHH
Q 044850 32 EESLREGNVALFFS----GSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPD-GLGAAA--RFSNTLGAGKLKAAS 104 (250)
Q Consensus 32 ~~~l~~g~~~~l~~----~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~-gl~~a~--lvg~~~Gag~~~~a~ 104 (250)
+..++.+.|..... ....++.++++++.. +.+++.|+.+.++.+....... .++... ..++. ++|.++.+
T Consensus 207 k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~ 283 (492)
T PRK10459 207 KPNLSFGAWQTAERIINYLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLR 283 (492)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHH
Confidence 44555566665443 455667777776643 4578999999988776443333 344444 55654 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh-----HHHHHHH
Q 044850 105 VAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL----SA-----LRAYVDL 175 (250)
Q Consensus 105 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~----~g-----~~~~~~~ 175 (250)
+..++.......+++...+.+...+++++.++-.++ -..+...+.+.++..++..+.... .+ ..+..+.
T Consensus 284 ~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~ 361 (492)
T PRK10459 284 VGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNV 361 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHH
Confidence 999999999998988888888888888776654332 234556677766666555444332 22 4455555
Q ss_pred HHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 044850 176 GTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIIT 219 (250)
Q Consensus 176 ~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~ 219 (250)
... ++.+|..+.+. ..+|..|+.+++.+++.+...+..++.
T Consensus 362 ~~~-~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 362 FKT-FLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHH-HHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 34456554443 357999999999999988888777766
No 28
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.34 E-value=0.0001 Score=68.50 Aligned_cols=167 Identities=18% Similarity=0.098 Sum_probs=116.8
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVKA 109 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~ 109 (250)
+.++|..+..........+++++++++-. +..++-|+.+.++......+..+++... ..++...+|+.++.++..+.
T Consensus 217 ~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~ 295 (480)
T COG2244 217 RFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQ 295 (480)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 45566666666666677888888877743 4578899988999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh-----HHHHHHHHHHHH
Q 044850 110 VIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKT----VLSA-----LRAYVDLGTYYV 180 (250)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~----~~~g-----~~~~~~~~~~~~ 180 (250)
........++...+.+..+++++..++-.++... +...+.+.++..++..+.. .+++ ..+..+..+. +
T Consensus 296 ~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 372 (480)
T COG2244 296 SLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-L 372 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-H
Confidence 9999999999999999999988887665443321 3444444444444433332 2333 3333333322 2
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHH
Q 044850 181 FGIPVAAALGFLFKLRGPAPWIGL 204 (250)
Q Consensus 181 i~ipl~~ll~~~~~~g~~G~w~a~ 204 (250)
+.+.+.+++ .+.+|..|...++
T Consensus 373 ~~~~l~~~l--i~~~g~~g~~~a~ 394 (480)
T COG2244 373 LNLILNLLL--IPRFGLIGAAIAT 394 (480)
T ss_pred HHHHHHhHH--HHhhhhhhHHHHH
Confidence 223344443 3467888888887
No 29
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.44 E-value=0.071 Score=46.91 Aligned_cols=136 Identities=7% Similarity=-0.014 Sum_probs=92.7
Q ss_pred hHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHHHHHH
Q 044850 28 EEKKEESLREGNVALFFSGSEELLTLLSGFLPNP-KLETSAPSVCLATVYTLNTIPDGLGAAARFSNTLGAGKLKAASVA 106 (250)
Q Consensus 28 ~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~-~~avAa~~i~~~i~~~~~~~~~gl~~a~lvg~~~Gag~~~~a~~~ 106 (250)
..+.+...|.++.......+-.+.+.-+++-... ...+|+|+++..+.-++-.+...+-+.. -+++.++.+ ++.
T Consensus 11 ~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~ig---l~~V~s~rs--rr~ 85 (345)
T PF07260_consen 11 WPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIG---LVFVNSKRS--RRK 85 (345)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHH---HHHhcchhh--hHH
Confidence 3444577888888888888888888888775422 2449999999999988887877776665 333333322 333
Q ss_pred HHHHHHHHHHHHHHH-HHHHH-hchh-HhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044850 107 VKAVIFLANSESMIV-IATLL-NSRH-VFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA 168 (250)
Q Consensus 107 ~~~~~~~~~~~~i~~-~~~~~-~~~~-~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g 168 (250)
...++..+.++...+ .++-+ .... .+-.+|..|+++.+.+...+.+..+..++++++.+.+|
T Consensus 86 ~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qG 150 (345)
T PF07260_consen 86 AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQG 150 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444443333333222 22222 1222 34557789999999999999999999999999999998
No 30
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.22 E-value=0.038 Score=52.68 Aligned_cols=192 Identities=10% Similarity=0.027 Sum_probs=125.4
Q ss_pred chhHHHHHHhHhHHHHHHHHHHHHHHHHHhhc--CCCchhhhhHHHHHHHHHHHHH-HhHHhHHHHH--HHHHHhcCCCh
Q 044850 26 LDEEKKEESLREGNVALFFSGSEELLTLLSGF--LPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA--RFSNTLGAGKL 100 (250)
Q Consensus 26 ~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~~--~G~~~~avAa~~i~~~i~~~~~-~~~~gl~~a~--lvg~~~Gag~~ 100 (250)
+|.+..........+.++.....+-..+++.. +.+ ..+.+.|++++|.-+++- .+..=+-.+. +-++....++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~ 329 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNS 329 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCc
Confidence 56777666666666777777666666666666 554 335678999999888762 2222255555 55665554433
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q 044850 101 ---------KAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA--- 168 (250)
Q Consensus 101 ---------~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g--- 168 (250)
+++.+.....+++...+++++..+.....+.+..++..+.=.-..+...++.++.+.++.++|.+..+
T Consensus 330 ~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~ 409 (549)
T PF04506_consen 330 KKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVF 409 (549)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHH
Confidence 45666777777777777777776766777777777643221222236678888999999999888766
Q ss_pred ----------HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850 169 ----------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 169 ----------~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
..-..... -++.+..+|++..+ ++|..|.-+|-.+.+.++-+....+.+|
T Consensus 410 s~a~~~~l~~~~~~m~~~--S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 410 SVASESQLDRYNYWMVVF--SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HhCCHHHHHHHHHHHHHH--HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 12233455666554 7899999999999999998888776654
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=97.03 E-value=0.31 Score=46.09 Aligned_cols=173 Identities=14% Similarity=0.035 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHh--HHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 044850 44 FSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDG--LGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESM 119 (250)
Q Consensus 44 ~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~g--l~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i 119 (250)
.-.++.=..+++..+|.+ ....|+.++.++=+++--+.-+ ++++- .-.+...++..+++++...........+.+
T Consensus 24 Ri~G~vRd~~iA~~fGa~-~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll 102 (518)
T COG0728 24 RILGFVRDVLIAAAFGAG-AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLL 102 (518)
T ss_pred HHHHHHHHHHHHHHhCCc-hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHH
Confidence 344566667888899975 3578999999999998665554 44555 778888888788888888888877777888
Q ss_pred HHHHHHHhchhHhH-hhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHhhH
Q 044850 120 IVIATLLNSRHVFF-YVLSN--TKEVVDHVRTMATLMCLSVVLDSLKTVLSA-------------LRAYVDLGTYYVFGI 183 (250)
Q Consensus 120 ~~~~~~~~~~~~i~-~lf~~--~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g-------------~~~~~~~~~~~~i~i 183 (250)
..+++..++.++++ .++.. |++....+....++..++.++.++..+..+ .|...|+.. +
T Consensus 103 ~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~-----I 177 (518)
T COG0728 103 LVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSV-----I 177 (518)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHH-----H
Confidence 88888889999999 55554 344444778888888888888887766655 333444321 1
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 184 PVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 184 pl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
...+.+..+......+..+|+.++-+....+.+..++|.
T Consensus 178 ~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 178 GLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 122222222111245667778888888888888887764
No 32
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=96.10 E-value=0.69 Score=38.69 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=77.5
Q ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHh-HHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850 48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTI-PDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIAT 124 (250)
Q Consensus 48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~-~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~ 124 (250)
+...-++...+| +++.+-++...++..+...+ -.|++++. .++++..+ .++.+++........+..+++....
T Consensus 20 ~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 95 (273)
T PF01943_consen 20 FITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLI 95 (273)
T ss_pred HHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566 44677788888887776654 67788887 66665554 3444444444444444444433333
Q ss_pred HHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhHHHHHHHHHHhCCCchh
Q 044850 125 LLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA-----LRAYVDLGTYYVFGIPVAAALGFLFKLRGPA 199 (250)
Q Consensus 125 ~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g-----~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G 199 (250)
..... .+.+++..........................++ .....++..... .+....++ ...+.+..+
T Consensus 96 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 168 (273)
T PF01943_consen 96 LLIAS-----FFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL-SLLLILLL-LFLGSSLWG 168 (273)
T ss_pred HHHHH-----HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHhhhHHH
Confidence 32222 3333332222211111111111111222233333 222333332221 12122222 222334777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 044850 200 PWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 200 ~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
..++..++..+..++...+.+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 169 FLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777766654
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=96.01 E-value=1.3 Score=41.18 Aligned_cols=151 Identities=16% Similarity=0.229 Sum_probs=76.7
Q ss_pred HHHHhhcCCCchhhhhHHHHHHHHHHHHHH-hHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 044850 51 LTLLSGFLPNPKLETSAPSVCLATVYTLNT-IPDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSR 129 (250)
Q Consensus 51 ~~~~~~~~G~~~~avAa~~i~~~i~~~~~~-~~~gl~~a~lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~ 129 (250)
...+...+| +.+...++.+..+..+... .-.|++++. +-+ ++. .++.......+....+++..++.+.+.
T Consensus 29 ~~ilaR~L~--p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai-i~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (492)
T PRK10459 29 LTVLARILD--NHQFGLLTMSLVIIGFADTLSDMGIGASI-IQR----QDI--SHLQLSTLYWLNVGLGIVVFVLVFLLS 99 (492)
T ss_pred HHHHHHhCC--HHHccHHHHHHHHHHHHHHHHHcCHHHHH-Hhc----ccC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567 3456667777777666543 334566654 221 111 122333444555666666666777777
Q ss_pred hHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhH
Q 044850 130 HVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAP 200 (250)
Q Consensus 130 ~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~ 200 (250)
+.+..+|.+ ++.. ..+++.++..++.++.....+ .....+...... ...+...+. ..+.|..+.
T Consensus 100 ~~i~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~-~~~~~i~~~-~~~~g~~~l 172 (492)
T PRK10459 100 PLIADFYHN-PELA----PLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVA-GFTFAVVSA-FFWPGALAA 172 (492)
T ss_pred HHHHHHcCC-hhhH----HHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHH-HHCCcHHHH
Confidence 777776654 4432 234444444444443332222 222333333221 222222222 346788888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044850 201 WIGLQAGAFLQTILLFI 217 (250)
Q Consensus 201 w~a~~~~~~~~~i~~~~ 217 (250)
.++..++..+..++...
T Consensus 173 ~~~~~~~~~~~~l~~~~ 189 (492)
T PRK10459 173 ILGYLVNSSVRTLLFGY 189 (492)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887776655433
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=0.51 Score=43.61 Aligned_cols=203 Identities=10% Similarity=-0.037 Sum_probs=114.0
Q ss_pred hcccCCcceeeecccc-----chhHHHHHHhHhHHHHHHHHHHHHHHHHHhh---cCCCchhhhhHHHHHHHHHHHHHH-
Q 044850 10 EVGDDDGTLLLEEKDT-----LDEEKKEESLREGNVALFFSGSEELLTLLSG---FLPNPKLETSAPSVCLATVYTLNT- 80 (250)
Q Consensus 10 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~g~~~~l~~~~~~i~~~~~~---~~G~~~~avAa~~i~~~i~~~~~~- 80 (250)
+...+..+++....+. +|.+..+.....--+.++......-.-.+++ -...++ -+.|.+.+|+-+++-=
T Consensus 216 ~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~--QgvYd~v~n~GSLlaR~ 293 (530)
T KOG2864|consen 216 EPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGD--QGVYDLVSNYGSLLARL 293 (530)
T ss_pred cchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcch--hhHHHHHHhhhhHHHHH
Confidence 3444444444444443 5666655555555555555544332222322 122123 3457777776665522
Q ss_pred hHHhHHHHH--HHHHHhcCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHH
Q 044850 81 IPDGLGAAA--RFSNTLGAGKLKAASV---AVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCL 155 (250)
Q Consensus 81 ~~~gl~~a~--lvg~~~Gag~~~~a~~---~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~ 155 (250)
+.-=+-... .-+|-.-.++.|+.|+ .....++....+++++..+....+..+..++..+.=.-.-+...+++++.
T Consensus 294 iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~Ycl 373 (530)
T KOG2864|consen 294 IFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCL 373 (530)
T ss_pred HhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHH
Confidence 222344444 5555555555555544 45666667777777766666667777777776433222334567899999
Q ss_pred HHHHHHHHHHhhh---------------HHHHHHHHHHHHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 044850 156 SVVLDSLKTVLSA---------------LRAYVDLGTYYVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITN 220 (250)
Q Consensus 156 ~~~~~~i~~~~~g---------------~~~~~~~~~~~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~ 220 (250)
+.++.+++.+..| .-+.+..+ +.+.++|++.- .+|..|.-.|-.+.+.++-.....+++
T Consensus 374 YI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSv----iflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 374 YIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSV----IFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred HHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHH----HHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888776 22222222 23446677755 456777777777766666555544443
No 35
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=95.22 E-value=1.5 Score=36.35 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHh-HHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850 48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTI-PDGLGAAARFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLL 126 (250)
Q Consensus 48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~-~~gl~~a~lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~ 126 (250)
+....++...+| ..+.+.++....+..+...+ ..|+.+.. +- ..+++.++.++..+......++.++....+..
T Consensus 5 f~~~~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PF13440_consen 5 FLFLILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSL-VR--SAARDKQDIRSLLRFSLLVSLLLAVILAILAI 79 (251)
T ss_pred HHHHHHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HH--hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666 44678888888888777665 45555554 22 34466777888877777766666555544322
Q ss_pred hchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHhhh-----HHHHHHHHHHHHhhHHHHHHHHHHhCCCc
Q 044850 127 NSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSL----KTVLSA-----LRAYVDLGTYYVFGIPVAAALGFLFKLRG 197 (250)
Q Consensus 127 ~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i----~~~~~g-----~~~~~~~~~~~~i~ipl~~ll~~~~~~g~ 197 (250)
.... .+ .+++... ++....+..+..+. +..+.+ .....+....... +....++ ...+.+.
T Consensus 80 ~~~~----~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 148 (251)
T PF13440_consen 80 LIAY----FF-GDPELFW----LLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLR-LLLLVLL-LYLGLNL 148 (251)
T ss_pred HHHH----Hh-CChhHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHHHHHH-HHHHhhH
Confidence 2222 33 3444322 22233323333333 333333 2233333322111 1111111 2233477
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 044850 198 PAPWIGLQAGAFLQTILLFIIT 219 (250)
Q Consensus 198 ~G~w~a~~~~~~~~~i~~~~~~ 219 (250)
.+..++..++..+..++.....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLL 170 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888877776655533
No 36
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=92.62 E-value=1 Score=34.43 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=33.1
Q ss_pred HHhhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 044850 179 YVFGIPVAAALGFLFKLRGPAPWIGLQAGAFLQTILLFIITNR 221 (250)
Q Consensus 179 ~~i~ipl~~ll~~~~~~g~~G~w~a~~~~~~~~~i~~~~~~~~ 221 (250)
.++.+++.+++ .+++|..|+.+++.+++.....+..++.+|
T Consensus 39 ~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 39 AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677666 457899999999999999999888887776
No 37
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=90.02 E-value=16 Score=33.76 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=56.8
Q ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhH-HhHHHHH--HHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHHHH
Q 044850 48 EELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIP-DGLGAAA--RFSNTLGAGKLKAASVA-VKAVIFLANSESMIVIA 123 (250)
Q Consensus 48 ~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~-~gl~~a~--lvg~~~Gag~~~~a~~~-~~~~~~~~~~~~i~~~~ 123 (250)
+.....+...+|. .+.+.++.+..+..+...+. .|+..+. .++++...++....+.. ...+.......+++...
T Consensus 27 ~i~~~~lar~lg~--~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 104 (480)
T COG2244 27 LITIPLLARLLGP--EGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLL 104 (480)
T ss_pred HHHHHHHHHHhCc--ccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666773 35677888888888877766 7888888 89999998888888887 66666666666666555
Q ss_pred HHHhch
Q 044850 124 TLLNSR 129 (250)
Q Consensus 124 ~~~~~~ 129 (250)
..+...
T Consensus 105 ~~~~~~ 110 (480)
T COG2244 105 IAYLLA 110 (480)
T ss_pred HHHHhc
Confidence 544443
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=70.30 E-value=35 Score=28.12 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=45.8
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHH
Q 044850 32 EESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSN 93 (250)
Q Consensus 32 ~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~ 93 (250)
+.+.|..+...........+.++++.+.. ..+++-|+++.++......+...+.+.. ..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~ 271 (273)
T PF01943_consen 209 RFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSR 271 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666667778888887754 5579999999999999999999988865 6554
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=69.41 E-value=30 Score=28.30 Aligned_cols=58 Identities=14% Similarity=0.006 Sum_probs=45.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHhhc-CCCchhhhhHHHHHHHHHHHHH-HhHHhHHHHH
Q 044850 30 KKEESLREGNVALFFSGSEELLTLLSGF-LPNPKLETSAPSVCLATVYTLN-TIPDGLGAAA 89 (250)
Q Consensus 30 ~~~~~l~~g~~~~l~~~~~~i~~~~~~~-~G~~~~avAa~~i~~~i~~~~~-~~~~gl~~a~ 89 (250)
..+.+.+..+...+.+.......++++. +| ..+++.|+++.++..... .+..++++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~ 244 (251)
T PF13440_consen 185 LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVF 244 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777778888888888 65 567999999999999777 7877777665
No 40
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=65.14 E-value=44 Score=23.28 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=26.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 044850 90 RFSNTLGAGKLKAASVAVKAVIFLANSESMI 120 (250)
Q Consensus 90 lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~ 120 (250)
-+-..+-+||++.|++..+.+..++.+-.++
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 8888999999999999999999888654443
No 41
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=64.69 E-value=60 Score=24.64 Aligned_cols=29 Identities=34% Similarity=0.315 Sum_probs=21.0
Q ss_pred ccchhHHHHHHhHhHHHHHHHHHHHHHHH
Q 044850 24 DTLDEEKKEESLREGNVALFFSGSEELLT 52 (250)
Q Consensus 24 ~~~~~~~~~~~l~~g~~~~l~~~~~~i~~ 52 (250)
..+|+...+..=++|...++..+.++...
T Consensus 19 GplDE~r~~ei~rign~a~i~l~~~~l~~ 47 (129)
T PF11683_consen 19 GPLDEYRRQEINRIGNNAFIILFYYSLLL 47 (129)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888877666554443
No 42
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=63.96 E-value=18 Score=23.23 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=16.2
Q ss_pred hccHHHHHHHHHhhccCCCCCCCCccccC
Q 044850 221 RTNWEKQARERILEERFSPENRLPILTEE 249 (250)
Q Consensus 221 ~~~W~~~~~~r~~~~~~~~~~~~~~~~~~ 249 (250)
|--|+++.+++.++-..+.+.--+.|+||
T Consensus 29 RnY~r~Kid~aAaeK~s~~~~a~~~p~~p 57 (59)
T PF07125_consen 29 RNYFRRKIDDAAAEKISATASAGSKPEEP 57 (59)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCC
Confidence 44566666666555554444445556665
No 43
>PRK09546 zntB zinc transporter; Reviewed
Probab=59.72 E-value=28 Score=30.79 Aligned_cols=42 Identities=14% Similarity=0.019 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhCCCch---------hHHHHHHHHHHHHHHHHHHHHhhccH
Q 044850 181 FGIPVAAALGFLFKLRGP---------APWIGLQAGAFLQTILLFIITNRTNW 224 (250)
Q Consensus 181 i~ipl~~ll~~~~~~g~~---------G~w~a~~~~~~~~~i~~~~~~~~~~W 224 (250)
+.+|+.++.++ ++|.+. |.|+. .+..++.++..+++++|.+|
T Consensus 273 IflPlT~IaGi-yGMNf~~mPel~~~~gy~~~-l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 273 VFLPTTFLTGL-FGVNLGGIPGGGWPFGFSIF-CLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHhh-hccccCCCCCcCCcchHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 34577766654 344332 33433 33344555566778888888
No 44
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=56.65 E-value=81 Score=23.54 Aligned_cols=63 Identities=3% Similarity=-0.170 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044850 104 SVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVL 166 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~ 166 (250)
|+..|..+.++....+..++...+.|......++..+..-....+..+.+.-.+...++....
T Consensus 1 ~~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l~ 63 (124)
T PF14248_consen 1 KRILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLLW 63 (124)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888988888998888877632211122333444444444444444443
No 45
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=54.29 E-value=30 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhCCCch---------hHHHHHHHHHHHHHHHHHHHHhhccH
Q 044850 182 GIPVAAALGFLFKLRGP---------APWIGLQAGAFLQTILLFIITNRTNW 224 (250)
Q Consensus 182 ~ipl~~ll~~~~~~g~~---------G~w~a~~~~~~~~~i~~~~~~~~~~W 224 (250)
.+|+..+-++ ++|.+. |.|+. ....++.++..+++++|.+|
T Consensus 268 flP~t~IaGi-yGMNf~~mP~l~~~~gy~~~-l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 268 FIPLTFIAGI-YGMNFKFMPELNWKYGYPAV-LIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH-HhCCcccCccccchhHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 3566666554 344332 33333 33334455566778888888
No 46
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=49.89 E-value=1.1e+02 Score=23.04 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhHHHHHH
Q 044850 172 YVDLGTYYVFGIPVAAA 188 (250)
Q Consensus 172 ~~~~~~~~~i~ipl~~l 188 (250)
.+++....+...|.+++
T Consensus 76 iiHf~~~~~~~~~~~~~ 92 (136)
T PF11457_consen 76 IIHFIITYAIFLILAYL 92 (136)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33433333334444443
No 47
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=43.43 E-value=39 Score=29.90 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhCCCc---------hhHHHHHHHHHHHHHHHHHHHHhhccH
Q 044850 182 GIPVAAALGFLFKLRG---------PAPWIGLQAGAFLQTILLFIITNRTNW 224 (250)
Q Consensus 182 ~ipl~~ll~~~~~~g~---------~G~w~a~~~~~~~~~i~~~~~~~~~~W 224 (250)
.+|+.++.++ ++|.+ .|.|++..+. ++.+++..++++|.+|
T Consensus 272 flPpTlIagi-yGMNf~~mPel~~~~Gy~~~l~~m-~~~~~~~~~~frrk~W 321 (322)
T COG0598 272 FLPPTLITGF-YGMNFKGMPELDWPYGYPIALILM-LLLALLLYLYFRRKGW 321 (322)
T ss_pred HHhhHHHHcc-cccCCCCCcCCCCcccHHHHHHHH-HHHHHHHHHHHHhcCc
Confidence 3577666654 23332 2566665554 5555666778888888
No 48
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=37.42 E-value=76 Score=28.17 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhCCCch---------hHHHHHHHHHHHHHHHHHHHHhhccH
Q 044850 182 GIPVAAALGFLFKLRGP---------APWIGLQAGAFLQTILLFIITNRTNW 224 (250)
Q Consensus 182 ~ipl~~ll~~~~~~g~~---------G~w~a~~~~~~~~~i~~~~~~~~~~W 224 (250)
.+|...+.++ ++|.+. |.|++. ....+.++..+++++|.+|
T Consensus 266 f~pptliagi-yGMNf~~mP~~~~~~g~~~~l-~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 266 FLPPTLVASS-YGMNFEFMPELKWSFGYPGAI-ILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHhh-cccccCCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHccc
Confidence 4566655554 344322 334333 3334445555677888888
No 49
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=34.89 E-value=2.1e+02 Score=21.91 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044850 200 PWIGLQAGAFLQTILLF 216 (250)
Q Consensus 200 ~w~a~~~~~~~~~i~~~ 216 (250)
+-+|..++..+..++..
T Consensus 68 i~yG~Fi~~vinFlIiA 84 (130)
T COG1970 68 IAYGAFIQAVINFLIIA 84 (130)
T ss_pred eeHhHHHHHHHHHHHHH
Confidence 34455555555544443
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.04 E-value=66 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 199 APWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 199 G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
|+-+|.+++-+..-++..++++|.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444333233333444443
No 51
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=29.89 E-value=67 Score=26.78 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=28.7
Q ss_pred hHHhHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850 81 IPDGLGAAA--RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLL 126 (250)
Q Consensus 81 ~~~gl~~a~--lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~ 126 (250)
..++.|.+. ++|+.+|+.+....++-..-+....++.+.+...+++
T Consensus 121 ~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~~~~ 168 (216)
T COG0170 121 LVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVLY 168 (216)
T ss_pred HHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHHHHH
Confidence 445666666 9999999975555555555555555555555554433
No 52
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=25.88 E-value=1.2e+02 Score=25.97 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhccCCCCCCCCcccc
Q 044850 208 AFLQTILLFIITNRTNWEKQARERILEERFSPENRLPILTE 248 (250)
Q Consensus 208 ~~~~~i~~~~~~~~~~W~~~~~~r~~~~~~~~~~~~~~~~~ 248 (250)
..+.+.+..|.+.|-+|++..-+|+.+..|.|+-..|..++
T Consensus 24 ~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~ 64 (252)
T COG3346 24 FAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLD 64 (252)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 34445556678888899988877777777877777766544
No 53
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=25.25 E-value=1.5e+02 Score=24.56 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=15.3
Q ss_pred HhhccHHHHHHHHHhhccCC
Q 044850 219 TNRTNWEKQARERILEERFS 238 (250)
Q Consensus 219 ~~~~~W~~~~~~r~~~~~~~ 238 (250)
..+.++.|+++|++.||.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~ 200 (201)
T PRK14766 181 LYIKSKIKTKKEKIENEQNN 200 (201)
T ss_pred HhcchhhhhhhHHhhccccC
Confidence 44567777779999998764
No 54
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=24.66 E-value=1.7e+02 Score=17.71 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 044850 199 APWIGLQAGAFLQTILLFIITN 220 (250)
Q Consensus 199 G~w~a~~~~~~~~~i~~~~~~~ 220 (250)
-+|.+..++-.+...+.....+
T Consensus 7 yVW~sYg~t~l~l~~li~~~~~ 28 (45)
T TIGR03141 7 YVWLAYGITALVLAGLILWSLL 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776665555444433
No 55
>COG4327 Predicted membrane protein [Function unknown]
Probab=23.88 E-value=1.6e+02 Score=21.15 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHhhccCCCCCC
Q 044850 199 APWIGLQAGAFLQTILLFIITNRTNWEKQA--RERILEERFSPENR 242 (250)
Q Consensus 199 G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~--~~r~~~~~~~~~~~ 242 (250)
|.|.+---+-+.-.++.+.+.++.+...++ .++-+++.++.|+.
T Consensus 53 ~ywma~QGsiitfVvlifvya~r~nkld~k~~ide~~~~~~a~~~s 98 (101)
T COG4327 53 GYWMAQQGSIITFVVLIFVYAWRMNKLDDKANIDEGAAQQDARETS 98 (101)
T ss_pred hhhhhcCCCeeehHHHHHHHHHHHhHHHHHhCcccchhHHhhccCC
Confidence 444443333222233333444444332222 33444444444443
No 56
>PF03916 NrfD: Polysulphide reductase, NrfD; InterPro: IPR005614 NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway [].
Probab=23.76 E-value=3e+02 Score=23.94 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=26.9
Q ss_pred HHhHHhHHHHH----HHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 044850 79 NTIPDGLGAAA----RFSNTLGAGKLKAASVAVKAVIFLANSESM 119 (250)
Q Consensus 79 ~~~~~gl~~a~----lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i 119 (250)
+.+..|++.|. ...+-.|.+++++.++..+.+..++....+
T Consensus 18 y~f~~glaaG~~~~a~~~~~f~~~~~~~~~~~a~~~~~~a~~~l~ 62 (313)
T PF03916_consen 18 YLFFGGLAAGAFLLASLAYLFGKKKYKPFRRLARLAALLALAALI 62 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHH
Confidence 44555666665 555667888777777777777776655544
No 57
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=23.59 E-value=5.1e+02 Score=22.81 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=33.6
Q ss_pred HHhHHhHHHHH-HHHHHhcCCChHHHH--HHHHHHHHHHHHHHHH-HHHHHHhchhHhHhhhCC
Q 044850 79 NTIPDGLGAAA-RFSNTLGAGKLKAAS--VAVKAVIFLANSESMI-VIATLLNSRHVFFYVLSN 138 (250)
Q Consensus 79 ~~~~~gl~~a~-lvg~~~Gag~~~~a~--~~~~~~~~~~~~~~i~-~~~~~~~~~~~i~~lf~~ 138 (250)
=+....++.+. +++..++.++.++-+ -+-|...+.+++-+++ +++.++..-+.+-+++..
T Consensus 56 Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P 119 (296)
T COG1230 56 HMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAP 119 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555566666 777777766655532 2334444444444443 334455666777888753
No 58
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=22.83 E-value=5.7e+02 Score=23.04 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=17.0
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 044850 93 NTLGAGKLKAASVAVKAVIFLANSESMI 120 (250)
Q Consensus 93 ~~~Gag~~~~a~~~~~~~~~~~~~~~i~ 120 (250)
.+.-+|+..|.+........++....+.
T Consensus 13 dARkkGqV~kS~el~~a~~ll~~~~~l~ 40 (347)
T TIGR00328 13 KAREEGNVPKSREVNSAAVLLAGVLSLL 40 (347)
T ss_pred HHHhcCCCCchHhHHHHHHHHHHHHHHH
Confidence 4455677777777766666655544443
No 59
>COG3462 Predicted membrane protein [Function unknown]
Probab=22.01 E-value=2.3e+02 Score=21.02 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=15.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 044850 196 RGPAPWIGLQAGAFLQTILLFI 217 (250)
Q Consensus 196 g~~G~w~a~~~~~~~~~i~~~~ 217 (250)
|..|.|+-+++-+.+..++++.
T Consensus 45 G~yGm~lImpI~~~vvli~lvv 66 (117)
T COG3462 45 GLYGMWLIMPIFWAVVLIFLVV 66 (117)
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 4567788888777766655544
No 60
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=21.39 E-value=3.6e+02 Score=20.30 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 044850 199 APWIGLQAGAFLQTILL 215 (250)
Q Consensus 199 G~w~a~~~~~~~~~i~~ 215 (250)
|.++...+.-.+.+...
T Consensus 64 G~fl~avinFlIiA~vv 80 (119)
T PRK13954 64 GLFIQSVIDFIIIAFAL 80 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444443
No 61
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.14 E-value=1.3e+02 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 044850 194 KLRGPAPWIGLQAGAFLQTILLFIITNRTNWEKQA 228 (250)
Q Consensus 194 ~~g~~G~w~a~~~~~~~~~i~~~~~~~~~~W~~~~ 228 (250)
..|+.+.+++.++..++.++++++.+++.-|+.-.
T Consensus 10 ~~~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~ 44 (175)
T PRK14472 10 SGGLLSPNPGLIFWTAVTFVIVLLILKKIAWGPIL 44 (175)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34667777777777777777777777766666554
No 62
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=21.03 E-value=6.2e+02 Score=22.84 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHH
Q 044850 98 GKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMC 154 (250)
Q Consensus 98 g~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~ 154 (250)
++.+.-|...+-++.-+++++++....-+......-.++..|-...+.+.++-+...
T Consensus 203 ~~~~~~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~~v~~~dIP~l~i~~~~~~~i~ 259 (349)
T COG3949 203 GRMESRKVSGIGGLIGGLILGVLLFLINLSLIALYDKVVNYDIPLLTIAKNFSPLIG 259 (349)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhcchhhccCCcHHHHHHhccHHHH
Confidence 444444555555566666666665555444444444566666666666655544443
No 63
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.97 E-value=1.1e+02 Score=21.85 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=17.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 044850 194 KLRGPAPWIGLQAGAFLQTILLFII 218 (250)
Q Consensus 194 ~~g~~G~w~a~~~~~~~~~i~~~~~ 218 (250)
++...|.|+..++..++..+++.+.
T Consensus 29 ~~~~Lgm~~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 29 NWPNLGMWFLVICGIFILLVILWFV 53 (94)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHH
Confidence 3445578888888887777776544
No 64
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=20.87 E-value=3.8e+02 Score=20.36 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 044850 199 APWIGLQAGAFLQT 212 (250)
Q Consensus 199 G~w~a~~~~~~~~~ 212 (250)
|.++...+.-.+.+
T Consensus 67 G~fl~avinFlIia 80 (125)
T PRK13953 67 GAFIQSIVDFLIIA 80 (125)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 65
>PRK11469 hypothetical protein; Provisional
Probab=20.86 E-value=4.6e+02 Score=21.25 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=20.5
Q ss_pred HhHHhHHHHH---HHHHHhcCCCh-HHHHHHHHHHHHHHHHHH
Q 044850 80 TIPDGLGAAA---RFSNTLGAGKL-KAASVAVKAVIFLANSES 118 (250)
Q Consensus 80 ~~~~gl~~a~---lvg~~~Gag~~-~~a~~~~~~~~~~~~~~~ 118 (250)
.+..+++.++ -+|-++|.++. .+.|+..+.+..+++.-+
T Consensus 6 i~llaialsmDaF~v~ia~G~~~~~~~~~~~~~~~l~~g~~q~ 48 (188)
T PRK11469 6 TVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVET 48 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH
Confidence 3444555555 77777776543 234444555555554433
Done!