Query 044850
Match_columns 250
No_of_seqs 138 out of 1358
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 2.1E-20 7.1E-25 169.8 18.4 192 29-222 239-446 (460)
2 3mkt_A Multi antimicrobial ext 99.6 1.6E-14 5.4E-19 130.9 16.5 188 31-222 15-217 (460)
3 2knc_B Integrin beta-3; transm 57.6 21 0.00072 23.8 5.0 41 197-237 10-57 (79)
4 4ev6_A Magnesium transport pro 47.8 23 0.00079 30.2 5.0 42 181-224 288-338 (339)
5 2iub_A CORA, divalent cation t 17.0 36 0.0012 29.3 0.7 25 199-224 338-362 (363)
6 3iyz_A Aquaporin-4; water tran 9.0 3.5E+02 0.012 23.1 4.4 49 199-247 249-298 (340)
7 3tui_A D-methionine transport 7.8 6.6E+02 0.023 18.4 5.4 49 90-138 121-169 (217)
8 4hkr_A Calcium release-activat 6.0 1E+03 0.034 18.8 15.5 76 64-140 59-144 (214)
9 1b9u_A Protein (ATP synthase); 5.9 3.9E+02 0.013 13.9 3.3 24 204-227 6-29 (34)
10 2k1k_A Ephrin type-A receptor 5.6 4.7E+02 0.016 14.4 3.1 26 197-222 13-38 (38)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=2.1e-20 Score=169.80 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=172.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHH
Q 044850 29 EKKEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVA 106 (250)
Q Consensus 29 ~~~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~ 106 (250)
+..+.+.|..+....+...+.+.+.+++++| +.++|+|+++.++.++.+++..|++++. .+|+++|+||.+|+++.
T Consensus 239 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~ 316 (460)
T 3mkt_A 239 RLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIA 316 (460)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3345677777777778888888999999998 4589999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHH
Q 044850 107 VKAVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGT 177 (250)
Q Consensus 107 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~ 177 (250)
.+.+...+..+++..++.++++++++..+|++|+++.+.+..++++.+++.++++++.+..+ .++..++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 396 (460)
T 3mkt_A 317 ANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFIS 396 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998876554 778999999
Q ss_pred HHHhhHHHHHHHHHH----hC-CCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 178 YYVFGIPVAAALGFL----FK-LRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 178 ~~~i~ipl~~ll~~~----~~-~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
.|++.+|+.+++... ++ +|..|+|+++.+++++.+++..++++|.
T Consensus 397 ~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 397 YWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 56 9999999999999999998887766654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.61 E-value=1.6e-14 Score=130.94 Aligned_cols=188 Identities=14% Similarity=0.096 Sum_probs=154.7
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHhHHhHHHHH--HHHHHhcCCChHHHHHHHH
Q 044850 31 KEESLREGNVALFFSGSEELLTLLSGFLPNPKLETSAPSVCLATVYTLNTIPDGLGAAA--RFSNTLGAGKLKAASVAVK 108 (250)
Q Consensus 31 ~~~~l~~g~~~~l~~~~~~i~~~~~~~~G~~~~avAa~~i~~~i~~~~~~~~~gl~~a~--lvg~~~Gag~~~~a~~~~~ 108 (250)
.+..+|..+....+.....+.+.+++++| +.++++++++.++..+...+..|++.+. .++|++|+||.+++++..+
T Consensus 15 ~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~ 92 (460)
T 3mkt_A 15 IKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVH 92 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 34555666666666666777888899998 5579999999999998889999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHhHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHH
Q 044850 109 AVIFLANSESMIVIATLLNSRHVFFYVLSNTKEVVDHVRTMATLMCLSVVLDSLKTVLSA---------LRAYVDLGTYY 179 (250)
Q Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~~~ev~~~~~~~l~i~~~~~~~~~i~~~~~g---------~~~~~~~~~~~ 179 (250)
.++.+....+++.+++ +.+.+++..+++.|+++.+.+..|+++..++.++.++....++ .++..+....
T Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 170 (460)
T 3mkt_A 93 QGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGL- 170 (460)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-
Confidence 9999999999987765 6788889999999999999999999999999888888776655 4555555443
Q ss_pred HhhHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 180 VFGIPVAAALGFL----FKLRGPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 180 ~i~ipl~~ll~~~----~~~g~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
++.+++.+++.+. +++|+.|+.+++.+++++..++..++++|.
T Consensus 171 ~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 171 LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3556677777653 268999999999999999998887777653
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.60 E-value=21 Score=23.82 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHHHHhhccC
Q 044850 197 GPAPWIGLQAGAFLQTILLFIITN-------RTNWEKQARERILEERF 237 (250)
Q Consensus 197 ~~G~w~a~~~~~~~~~i~~~~~~~-------~~~W~~~~~~r~~~~~~ 237 (250)
+.++-.+.+.+-++.+++++..++ |.+++|.-+||-++..+
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~ 57 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWD 57 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334444545554444444444333 34455444666655433
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=47.81 E-value=23 Score=30.19 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhCCCc---------hhHHHHHHHHHHHHHHHHHHHHhhccH
Q 044850 181 FGIPVAAALGFLFKLRG---------PAPWIGLQAGAFLQTILLFIITNRTNW 224 (250)
Q Consensus 181 i~ipl~~ll~~~~~~g~---------~G~w~a~~~~~~~~~i~~~~~~~~~~W 224 (250)
+.+|+.++.++ ++|.+ .|.|++..+ .++.++..+++++|.+|
T Consensus 288 IflP~T~IaGi-yGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 288 IFAVPMWITGI-YGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HSSHHHHHHHH-TTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhh-ccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 34577766654 34433 345555444 45556667788888888
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=17.04 E-value=36 Score=29.28 Aligned_cols=25 Identities=8% Similarity=0.246 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccH
Q 044850 199 APWIGLQAGAFLQTILLFIITNRTNW 224 (250)
Q Consensus 199 G~w~a~~~~~~~~~i~~~~~~~~~~W 224 (250)
|.|++..+ .++.++..+++++|.+|
T Consensus 338 Gy~~~l~~-m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 338 GYPVVLAV-MGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp -CHHHHHH-HHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHccc
Confidence 33444333 34455566677888888
No 6
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=8.96 E-value=3.5e+02 Score=23.13 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHhhccCCCCCCCCccc
Q 044850 199 APWIGLQAGAFLQTILLFIITNRT-NWEKQARERILEERFSPENRLPILT 247 (250)
Q Consensus 199 G~w~a~~~~~~~~~i~~~~~~~~~-~W~~~~~~r~~~~~~~~~~~~~~~~ 247 (250)
-.|.+..++-++.+.+.-+.+... +-+++.+++.++-..++++|..+.|
T Consensus 249 VywvgPiiGailaallY~~l~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~ 298 (340)
T 3iyz_A 249 IYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVE 298 (340)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCCChhhhHHHHHhhcCcccccccchhhhh
Confidence 346666666655554433332211 1122224444444444444444433
No 7
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=7.76 E-value=6.6e+02 Score=18.43 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=33.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhHhhhCC
Q 044850 90 RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFFYVLSN 138 (250)
Q Consensus 90 lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~lf~~ 138 (250)
-.++..|+++.+..++..--...-.+..+........+.......+++.
T Consensus 121 eaA~~~Gas~~~~~~~i~lP~~~p~i~~~~~~~~~~~~~~~~~~~~l~~ 169 (217)
T 3tui_A 121 EASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA 169 (217)
T ss_dssp HHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHcCCCHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999887777777766666665444333333334433
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=6.04 E-value=1e+03 Score=18.75 Aligned_cols=76 Identities=5% Similarity=0.049 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHhHHHHH-----HHH-----HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHhH
Q 044850 64 ETSAPSVCLATVYTLNTIPDGLGAAA-----RFS-----NTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHVFF 133 (250)
Q Consensus 64 avAa~~i~~~i~~~~~~~~~gl~~a~-----lvg-----~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~ 133 (250)
-+.+|+++..+...+.++.+-+++-+ -++ .....--.+|.+.+.-.+..++..+++++.+.-...- .++
T Consensus 59 LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall-~WV 137 (214)
T 4hkr_A 59 MLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL-CWV 137 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heE
Confidence 48899999999998888888888876 221 1222444788899988888888877766554333222 235
Q ss_pred hhhCCcH
Q 044850 134 YVLSNTK 140 (250)
Q Consensus 134 ~lf~~~~ 140 (250)
++...++
T Consensus 138 KF~~~~~ 144 (214)
T 4hkr_A 138 KFYDLSR 144 (214)
T ss_dssp HHTTTCH
T ss_pred EeecCCc
Confidence 5555444
No 9
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.91 E-value=3.9e+02 Score=13.89 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHH
Q 044850 204 LQAGAFLQTILLFIITNRTNWEKQ 227 (250)
Q Consensus 204 ~~~~~~~~~i~~~~~~~~~~W~~~ 227 (250)
+.+.+.+..+++.+.++|--|+.-
T Consensus 6 ~l~~~~i~Flil~~~l~kf~~~Pi 29 (34)
T 1b9u_A 6 TILGQAIAFVLFVLFCMKYVWPPL 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777666643
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=5.55 E-value=4.7e+02 Score=14.43 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Q 044850 197 GPAPWIGLQAGAFLQTILLFIITNRT 222 (250)
Q Consensus 197 ~~G~w~a~~~~~~~~~i~~~~~~~~~ 222 (250)
..|+-.+.+++-.+...+.+++++|.
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eeeeehHHHHHHHHHHHHHHHHeecC
Done!