Query 044850
Match_columns 250
No_of_seqs 138 out of 1358
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 12:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044850.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044850hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 9.2 1.1E+02 0.0078 19.9 2.8 14 201-214 59-72 (109)
2 d3d31c1 f.58.1.1 (C:13-260) Su 7.5 2.2E+02 0.016 20.2 4.5 37 90-126 160-196 (248)
3 d1wmib1 a.137.13.1 (B:7-67) Hy 7.1 43 0.0031 18.6 -0.1 22 229-250 14-35 (61)
4 d2r6gg1 f.58.1.1 (G:7-296) Mal 5.5 3.2E+02 0.023 19.9 4.5 50 90-140 184-234 (290)
5 d2axti1 f.23.37.1 (I:1-35) Pho 5.4 2.2E+02 0.016 14.2 2.3 12 129-140 17-28 (35)
6 d3cx5d2 f.23.11.1 (D:261-307) 4.3 3E+02 0.022 14.8 2.4 15 214-228 22-36 (47)
7 d1ppjd2 f.23.11.1 (D:196-241) 4.1 3.3E+02 0.024 14.4 2.6 16 213-228 21-36 (46)
8 d2fyuk1 f.23.15.1 (K:1-53) Sub 3.7 1.5E+02 0.011 16.6 0.7 29 91-119 2-30 (53)
9 d2csba3 a.60.2.4 (A:410-464) T 3.7 2.4E+02 0.018 15.0 1.6 11 98-108 23-33 (55)
10 d2iuba2 f.17.3.1 (A:286-349) M 3.2 1.7E+02 0.012 16.5 0.7 10 198-207 40-49 (64)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.24 E-value=1.1e+02 Score=19.90 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 044850 201 WIGLQAGAFLQTIL 214 (250)
Q Consensus 201 w~a~~~~~~~~~i~ 214 (250)
-+|..++..+..++
T Consensus 59 ~~G~fi~a~InFlI 72 (109)
T d2oara1 59 DLNVLLSAAINFFL 72 (109)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 33444444444333
No 2
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=7.46 E-value=2.2e+02 Score=20.19 Aligned_cols=37 Identities=14% Similarity=-0.082 Sum_probs=30.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044850 90 RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLL 126 (250)
Q Consensus 90 lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~ 126 (250)
-.++..|+++.++-++...=.++-++..+........
T Consensus 160 eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~ 196 (248)
T d3d31c1 160 NAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARA 196 (248)
T ss_dssp HHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998877777777666654443
No 3
>d1wmib1 a.137.13.1 (B:7-67) Hypothetical protein PHS014 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.12 E-value=43 Score=18.59 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHhhccCCCCCCCCccccCC
Q 044850 229 RERILEERFSPENRLPILTEEI 250 (250)
Q Consensus 229 ~~r~~~~~~~~~~~~~~~~~~~ 250 (250)
-+|+..+--+++.++.+.+|+|
T Consensus 14 iqrleamlmpeerdediteeei 35 (61)
T d1wmib1 14 IQRLEAMLMPEERDEDITEEEI 35 (61)
T ss_dssp HHHHHHHTSCBCCCTTCCHHHH
T ss_pred HHHHHHHhCchhccccccHHHH
Confidence 4566667777777777766653
No 4
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=5.53 E-value=3.2e+02 Score=19.88 Aligned_cols=50 Identities=12% Similarity=-0.024 Sum_probs=35.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-hHhhhCCcH
Q 044850 90 RFSNTLGAGKLKAASVAVKAVIFLANSESMIVIATLLNSRHV-FFYVLSNTK 140 (250)
Q Consensus 90 lvg~~~Gag~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~~~-i~~lf~~~~ 140 (250)
=.++..||++.+.-++...=.++=++..+.++..+.. +.+. ...+++.++
T Consensus 184 EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~-~~~f~~~~~~~~~~ 234 (290)
T d2r6gg1 184 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAA-ITEVPVASLLLRDV 234 (290)
T ss_dssp HHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHCCSG
T ss_pred hhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhh-ccccccceeccCCC
Confidence 6788999999999999998888888887777765543 3333 334444443
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.42 E-value=2.2e+02 Score=14.21 Aligned_cols=12 Identities=25% Similarity=0.146 Sum_probs=6.5
Q ss_pred hhHhHhhhCCcH
Q 044850 129 RHVFFYVLSNTK 140 (250)
Q Consensus 129 ~~~i~~lf~~~~ 140 (250)
+-.+.++.++||
T Consensus 17 ~lFiFGFLSnDP 28 (35)
T d2axti1 17 LLFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHTTCT
T ss_pred HHHHHhhccCCC
Confidence 334555666665
No 6
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.30 E-value=3e+02 Score=14.78 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=10.0
Q ss_pred HHHHHHhhccHHHHH
Q 044850 214 LLFIITNRTNWEKQA 228 (250)
Q Consensus 214 ~~~~~~~~~~W~~~~ 228 (250)
.+.++++|.+|....
T Consensus 22 ~~~~y~KR~kWs~lK 36 (47)
T d3cx5d2 22 LLSIWVKKFKWAGIK 36 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccc
Confidence 345667788887654
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.05 E-value=3.3e+02 Score=14.45 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=10.2
Q ss_pred HHHHHHHhhccHHHHH
Q 044850 213 ILLFIITNRTNWEKQA 228 (250)
Q Consensus 213 i~~~~~~~~~~W~~~~ 228 (250)
..+.++.+|..|....
T Consensus 21 ~~l~yy~KR~~Ws~lK 36 (46)
T d1ppjd2 21 LPLVYAMKRHKWSVLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcc
Confidence 3345666777887654
No 8
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.68 E-value=1.5e+02 Score=16.58 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=19.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 044850 91 FSNTLGAGKLKAASVAVKAVIFLANSESM 119 (250)
Q Consensus 91 vg~~~Gag~~~~a~~~~~~~~~~~~~~~i 119 (250)
.++-+|.+..+-++.-.......+.+-++
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl 30 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAV 30 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhe
Confidence 35566777777777777776666665444
No 9
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.67 E-value=2.4e+02 Score=14.96 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=7.5
Q ss_pred CChHHHHHHHH
Q 044850 98 GKLKAASVAVK 108 (250)
Q Consensus 98 g~~~~a~~~~~ 108 (250)
|+++|+++.++
T Consensus 23 gnpervkqlar 33 (55)
T d2csba3 23 GNPERVKQLAR 33 (55)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 46777777665
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.23 E-value=1.7e+02 Score=16.53 Aligned_cols=10 Identities=10% Similarity=-0.410 Sum_probs=3.8
Q ss_pred hhHHHHHHHH
Q 044850 198 PAPWIGLQAG 207 (250)
Q Consensus 198 ~G~w~a~~~~ 207 (250)
.|.|+...+.
T Consensus 40 ~~~~~~~~~~ 49 (64)
T d2iuba2 40 WGYPVVLAVM 49 (64)
T ss_dssp --CHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455554443
Done!