BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044854
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9U|A Chain A, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
pdb|2Q9U|B Chain B, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
Length = 414
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 49 SSNDHYHD-DDETIKSTKRTRSLKNYKPENVKLLENNFSFKNYVAVEDNNKEIMMGSNTL 107
S DHYH + T TK+ + E++K+L K + D+ + +G TL
Sbjct: 93 SLKDHYHKFTNATFVCTKKCQ-------EHLKILYG--MEKATWLIVDDKYTLKIGKRTL 143
Query: 108 KHVPMPSLSLPEPAIMFSP 126
K +P+P L P+ + P
Sbjct: 144 KFIPVPLLHWPDSTFTYCP 162
>pdb|3O4L|D Chain D, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 195
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 90 YVAVEDNNKEIMMGSNTLKHVPMPSLSLPEPAI 122
Y EDNN +M G T + V P++ P+PA+
Sbjct: 82 YFCAEDNNARLMFGDGT-QLVVKPNIQNPDPAV 113
>pdb|3F4B|A Chain A, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
pdb|3F4B|B Chain B, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
pdb|3F4B|C Chain C, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
pdb|3F4B|D Chain D, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
Length = 323
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 52 DHYHDDDETIKSTKRTRSLKNYKPENVKLL 81
D+Y D DE K+ KR +LKNY E V L
Sbjct: 84 DNYDDIDEDTKNNKRYNNLKNYSIEEVANL 113
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 61 IKSTKRTRSLKNYKPENVKLLENNFSFKNYVAVEDNNKEIMMGSNTL 107
I T +T LKNY E+V L + + NY+ ++N E++ N +
Sbjct: 20 ILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIM 66
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 41 NSFKKTDGSSNDHYHDDDETIKSTKRTRSLKNYKPENVKLLENNFSFKNYVAVEDNNKEI 100
NS T G ++ HD I T +T LKNY E+V L + + NY+ ++N E+
Sbjct: 76 NSEHLTIGFKVENAHD---RILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIEL 132
Query: 101 MMGSNTL 107
+ N +
Sbjct: 133 VDFQNIM 139
>pdb|2ZIX|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
Length = 307
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 90 YVAVEDNNKEIMMGSNTLKHVPMPSLSLPEPAIMFSPRPVCEL------NAAAVK 138
Y+A+ + + +TL+ P + PE M SP P+C L NA A+K
Sbjct: 167 YLALLTRGLQRLYQGHTLRSRPWGTPGNPESGAMTSPNPLCSLLTFSDFNAGAIK 221
>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 220
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 9 LSAWEEILKHRIFSL----AYNIS--FDTKDGE--VTVRVNSFKKTDGSSNDHYHDDDET 60
++ W + KH + L AY I F KD E VT V K GS + H+H D
Sbjct: 24 VNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTG 83
Query: 61 IKSTKRTRSLKNYKPENVKLL---------ENNFSFKNYVAVEDNNKEIMMGSNTLKHVP 111
+RS+ Y E L N+FS NY V++ + G H P
Sbjct: 84 GIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPG---HTP 140
Query: 112 MPSLS-LPEPAIMFS 125
+ LPE I+F
Sbjct: 141 DNVVVWLPERKILFG 155
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 261 EVNLEKCPRAVLQRQCITYLGPQERQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLST 320
E LE P V++ T+LG +E V +E L ++S P + S + +L
Sbjct: 40 EALLEAGPGGVVR----THLG-EELSVHRPTLEEYLLHMKRSATPTYPKDASAMVTLLDL 94
Query: 321 TRALYVGPKKKGSFQHSSFLSGGATTAAGRLVAHNGILEAIWPYSGHYHPTEENFREF 378
+ V GS GG T R V G++E+ H E N R F
Sbjct: 95 APGMRVLEAGTGS--------GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF 144
>pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
Length = 222
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 9 LSAWEEILKHRIFSL----AYNIS--FDTKDGE--VTVRVNSFKKTDGSSNDHYHDDDET 60
++ W + KH + L AY I F KD E VT V K GS + H+H D
Sbjct: 25 VNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTG 84
Query: 61 IKSTKRTRSLKNYKPENVKLL---------ENNFSFKNYVAVEDNNKEIMMGSNTLKHVP 111
+RS+ Y E L N+FS NY V++ + G H P
Sbjct: 85 GIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPG---HTP 141
Query: 112 MPSLS-LPEPAIMFS 125
+ LPE I+F
Sbjct: 142 DNVVVWLPERKILFG 156
>pdb|3IZS|H Chain H, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|H Chain H, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|H Chain H, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|G Chain G, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 256
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 179 FFNIEKPETAVSRWARARTRAAKVGKGLSKDDK-----AQKLALQHWLEAID 225
FN +PETA + R AA V +G SK D A K L H + I+
Sbjct: 93 LFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIE 144
>pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1JJT|A Chain A, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1JJT|B Chain B, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1VGN|A Chain A, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|1VGN|B Chain B, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|2DOO|A Chain A, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
pdb|2DOO|B Chain B, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
Length = 228
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 9 LSAWEEILKHRIFSL----AYNIS--FDTKDGE--VTVRVNSFKKTDGSSNDHYHDDDET 60
++ W + KH + L AY I F KD E VT V K GS + H+H D
Sbjct: 25 VNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTG 84
Query: 61 IKSTKRTRSLKNYKPENVKLL---------ENNFSFKNYVAVEDNNKEIMMGSNTLKHVP 111
+RS+ Y E L N+FS NY V++ + G H P
Sbjct: 85 GIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPG---HTP 141
Query: 112 MPSLS-LPEPAIMFS 125
+ LPE I+F
Sbjct: 142 DNVVVWLPERKILFG 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,194,884
Number of Sequences: 62578
Number of extensions: 505876
Number of successful extensions: 1304
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 26
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)