BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044854
         (393 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P62286|ASPM_CANFA Abnormal spindle-like microcephaly-associated protein homolog
            OS=Canis familiaris GN=ASPM PE=2 SV=2
          Length = 3469

 Score = 37.7 bits (86), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 127  RPVCELNAAAVKLQKVYKSYRTRRNLADC--AVVVEELWWKALDFAALKRSSVSFFNIEK 184
            + + E N AAV +Q  Y++Y+T++N  +C  + ++ + W++    A  +R    + N++K
Sbjct: 2030 KKIKECNRAAVTIQSTYRAYKTKKNYTNCRASAIIIQRWYRGTKIANHQRK--EYLNLKK 2087

Query: 185  PET---AVSRWARAR 196
                  A+ R  R R
Sbjct: 2088 TAVKIQAIYRGIRVR 2102


>sp|Q8TJT7|IF2G_METAC Translation initiation factor 2 subunit gamma OS=Methanosarcina
           acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
           C2A) GN=eif2g PE=3 SV=1
          Length = 443

 Score = 32.3 bits (72), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 289 EVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGG 343
           E V+  G  L  + GI V T   +KWI +++T  ++Y GP K         L+ G
Sbjct: 273 EGVLHPGDELEIRPGIKVTTEGSTKWIPIVTTISSIYAGPTKVEEATPGGLLAVG 327


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,303,420
Number of Sequences: 539616
Number of extensions: 6306334
Number of successful extensions: 16606
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 16587
Number of HSP's gapped (non-prelim): 27
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)