Query 044854
Match_columns 393
No_of_seqs 150 out of 168
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 12:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxw_B Sodium channel protein 96.0 0.0041 1.4E-07 41.2 2.6 22 131-152 4-25 (27)
2 2l53_B CAM, voltage-gated sodi 95.9 0.0046 1.6E-07 42.2 2.6 24 131-154 4-27 (31)
3 2ix7_C Myosin-5A; contractIle 92.0 0.068 2.3E-06 39.1 2.0 37 130-166 2-40 (58)
4 1n2d_C IQ2 and IQ3 motifs from 91.5 0.086 2.9E-06 37.0 2.0 19 133-151 28-46 (48)
5 4dck_A Sodium channel protein 83.2 0.48 1.6E-05 42.7 2.1 23 131-153 128-150 (168)
6 2ix7_C Myosin-5A; contractIle 82.8 0.59 2E-05 34.0 2.1 23 131-153 26-48 (58)
7 1n2d_C IQ2 and IQ3 motifs from 79.2 0.72 2.5E-05 32.2 1.4 22 133-154 3-24 (48)
8 3dve_B Voltage-dependent N-typ 60.8 3.2 0.00011 26.7 1.2 17 134-150 6-22 (23)
9 3q7m_A Lipoprotein YFGL, BAMB; 58.8 24 0.00081 31.8 7.1 76 293-368 257-340 (376)
10 3ohg_A Uncharacterized protein 57.9 12 0.00041 35.8 5.2 39 285-329 109-147 (285)
11 3dvk_B Voltage-dependent R-typ 55.0 6.1 0.00021 25.4 1.8 17 134-150 7-23 (23)
12 1kk8_A Myosin heavy chain, str 55.0 6.3 0.00022 42.9 3.1 35 132-166 778-817 (837)
13 3bxl_B CAM, voltage-dependent 53.3 6.6 0.00022 25.9 1.7 17 135-151 4-20 (26)
14 2be1_A Serine/threonine-protei 53.0 17 0.00058 35.2 5.4 91 277-367 12-132 (339)
15 2dfs_A Myosin-5A; myosin-V, in 47.3 7 0.00024 43.6 1.9 22 132-153 790-811 (1080)
16 3q7m_A Lipoprotein YFGL, BAMB; 42.3 62 0.0021 29.0 7.1 51 312-362 318-375 (376)
17 2l60_A Peptide YY; GPCR ligand 36.8 29 0.00098 25.1 3.1 30 201-231 11-41 (41)
18 2bl0_A Major plasmodial myosin 36.6 21 0.00072 26.3 2.5 22 131-152 28-49 (63)
19 1kk8_A Myosin heavy chain, str 34.4 14 0.00049 40.2 1.8 27 133-168 805-831 (837)
20 2dfs_A Myosin-5A; myosin-V, in 33.5 23 0.00078 39.6 3.2 22 132-153 838-859 (1080)
21 1wdc_A Scallop myosin; calcium 31.9 28 0.00095 25.6 2.5 22 131-152 30-51 (64)
22 1w7j_A Myosin VA; motor protei 31.3 19 0.00066 39.0 2.2 21 132-152 767-787 (795)
23 3g43_E Voltage-dependent L-typ 31.0 20 0.00067 29.2 1.6 19 133-151 63-81 (81)
24 3mez_A Mannose-specific lectin 30.8 2E+02 0.0069 22.9 7.7 43 287-330 21-68 (111)
25 3gn4_A Myosin-VI; unconvention 30.5 23 0.00079 31.4 2.2 21 132-152 44-64 (148)
26 1f8p_A Neuropeptide Y (PNPY); 30.3 17 0.00058 25.7 1.0 29 202-231 8-37 (37)
27 3nok_A Glutaminyl cyclase; bet 28.7 97 0.0033 29.4 6.3 84 284-367 105-212 (268)
28 2bf9_A Pancreatic hormone; tur 26.5 67 0.0023 22.6 3.5 28 202-230 8-36 (36)
29 3htn_A Putative DNA binding pr 26.3 1.4E+02 0.0048 25.5 6.3 74 277-366 57-141 (149)
30 1yiq_A Quinohemoprotein alcoho 25.6 1E+02 0.0034 31.7 6.2 92 275-367 70-194 (689)
31 3no2_A Uncharacterized protein 25.0 1.2E+02 0.0041 27.0 5.9 47 322-369 186-236 (276)
32 1w6s_A Methanol dehydrogenase 24.1 1E+02 0.0036 31.5 6.0 93 275-367 62-193 (599)
33 1bba_A Bovine pancreatic polyp 23.5 71 0.0024 22.4 3.2 28 202-230 8-36 (36)
34 3a0c_A Mannose/sialic acid-bin 22.8 2.8E+02 0.0096 21.8 7.7 55 288-343 22-81 (110)
35 1kv9_A Type II quinohemoprotei 22.8 1.6E+02 0.0054 30.1 7.0 93 275-367 66-189 (668)
36 4h3o_A Lectin; cadmium, plant 22.8 2.8E+02 0.0096 21.8 7.5 44 287-330 20-69 (105)
37 2hz6_A Endoplasmic reticulum t 22.4 39 0.0013 31.4 2.2 76 293-368 27-114 (369)
38 1kb0_A Quinohemoprotein alcoho 21.4 1.3E+02 0.0044 30.8 6.0 94 274-367 76-201 (677)
39 3fvz_A Peptidyl-glycine alpha- 21.1 4.3E+02 0.015 23.3 9.0 87 280-366 150-278 (329)
40 2ad6_A Methanol dehydrogenase 20.9 2.1E+02 0.0071 28.7 7.3 93 275-367 62-187 (571)
No 1
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=95.96 E-value=0.0041 Score=41.21 Aligned_cols=22 Identities=18% Similarity=0.523 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhcc
Q 044854 131 ELNAAAVKLQKVYKSYRTRRNL 152 (393)
Q Consensus 131 ~~~~AA~~iQk~Yr~yRtRR~l 152 (393)
+.+.||+.||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999875
No 2
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.88 E-value=0.0046 Score=42.23 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhccCC
Q 044854 131 ELNAAAVKLQKVYKSYRTRRNLAD 154 (393)
Q Consensus 131 ~~~~AA~~iQk~Yr~yRtRR~la~ 154 (393)
+.+-||+.||+.||+|+-||.+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999998764
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=92.01 E-value=0.068 Score=39.06 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhhccCCc--ccchHHHHHHH
Q 044854 130 CELNAAAVKLQKVYKSYRTRRNLADC--AVVVEELWWKA 166 (393)
Q Consensus 130 ~~~~~AA~~iQk~Yr~yRtRR~la~~--~v~~~~~Ww~a 166 (393)
+.+..||++||+.||||..|+..... +++.-+.||..
T Consensus 2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg 40 (58)
T 2ix7_C 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRG 40 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999876532 34444555554
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=91.48 E-value=0.086 Score=37.03 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 044854 133 NAAAVKLQKVYKSYRTRRN 151 (393)
Q Consensus 133 ~~AA~~iQk~Yr~yRtRR~ 151 (393)
+.||++||+.+|||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4599999999999999874
No 5
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=83.17 E-value=0.48 Score=42.75 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhccC
Q 044854 131 ELNAAAVKLQKVYKSYRTRRNLA 153 (393)
Q Consensus 131 ~~~~AA~~iQk~Yr~yRtRR~la 153 (393)
....||..||+.||.|+-||++.
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 46679999999999999987654
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=82.79 E-value=0.59 Score=33.99 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhccC
Q 044854 131 ELNAAAVKLQKVYKSYRTRRNLA 153 (393)
Q Consensus 131 ~~~~AA~~iQk~Yr~yRtRR~la 153 (393)
.+..||+.||..+|||..|+.+.
T Consensus 26 ~~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 26 CMQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999998754
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=79.21 E-value=0.72 Score=32.20 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhhhhhccCC
Q 044854 133 NAAAVKLQKVYKSYRTRRNLAD 154 (393)
Q Consensus 133 ~~AA~~iQk~Yr~yRtRR~la~ 154 (393)
..||+.||+.+|||-.|+....
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999988643
No 8
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=60.77 E-value=3.2 Score=26.72 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhhhh
Q 044854 134 AAAVKLQKVYKSYRTRR 150 (393)
Q Consensus 134 ~AA~~iQk~Yr~yRtRR 150 (393)
=||..||..||.++.||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 48999999999999886
No 9
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=58.85 E-value=24 Score=31.78 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=47.1
Q ss_pred eCCeEEEccCCceee-ccCCCEEEEEEeCCCceEEeecCCCCcccccc-----CCCCccceeeeEEEe--cceEEEEcCC
Q 044854 293 ENGKLLYRQSGIPVE-TTEGSKWIFVLSTTRALYVGPKKKGSFQHSSF-----LSGGATTAAGRLVAH--NGILEAIWPY 364 (393)
Q Consensus 293 edGrLvy~~sG~~vd-Tt~~~kwIFVmdtsg~LYVG~KkkG~FqHSSF-----LaGg~V~AAG~I~V~--nG~Lk~Isp~ 364 (393)
.+|+++|...-.... -.-.+..+||.+.+|.||+=..+.|......- ....++++-|.|.+- +|.|..+++.
T Consensus 257 ~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 257 RSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp TTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred CCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECC
Confidence 366666654321111 11124468888888888887777777654321 123466677787775 6899999998
Q ss_pred CCCC
Q 044854 365 SGHY 368 (393)
Q Consensus 365 SGHY 368 (393)
+|..
T Consensus 337 tG~~ 340 (376)
T 3q7m_A 337 DGRF 340 (376)
T ss_dssp TCCE
T ss_pred CCcE
Confidence 8863
No 10
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=57.85 E-value=12 Score=35.83 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=25.8
Q ss_pred ceeEEEEEeCCeEEEccCCceeeccCCCEEEEEEeCCCceEEeec
Q 044854 285 RQVFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPK 329 (393)
Q Consensus 285 Re~YeV~IedGrLvy~~sG~~vdTt~~~kwIFVmdtsg~LYVG~K 329 (393)
+...-+.|+||++++...+. ....+|.++.+|++.|+..
T Consensus 109 ~~P~G~~I~nG~~i~~~~~~------~~~~~f~i~~dG~~~I~~~ 147 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYFE------GHDEVLYQLKNGETYVGQA 147 (285)
T ss_dssp TEESSCEEETTEEEECCCCT------TCCEEEEEETTSCEEEEEH
T ss_pred CceeEEEEECCEEEecCCCC------CcceEEEEeeCCeEEEEec
Confidence 45555666777776553321 1345899999999999854
No 11
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=55.04 E-value=6.1 Score=25.40 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhhhhh...
Q 044854 134 AAAVKLQKVYKSYRTRR... 150 (393)
Q Consensus 134 ~AA~~iQk~Yr~yRtRR... 150 (393)
=|+..||..||.+|.|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 38999999999999875
No 12
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=55.03 E-value=6.3 Score=42.91 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCc-----ccchHHHHHHH
Q 044854 132 LNAAAVKLQKVYKSYRTRRNLADC-----AVVVEELWWKA 166 (393)
Q Consensus 132 ~~~AA~~iQk~Yr~yRtRR~la~~-----~v~~~~~Ww~a 166 (393)
+..+|+.||+.+|||..||+..-. ++..-+++|.+
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~ 817 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 817 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446799999999999999987543 55555666654
No 13
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=53.28 E-value=6.6 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhhhhhhc
Q 044854 135 AAVKLQKVYKSYRTRRN 151 (393)
Q Consensus 135 AA~~iQk~Yr~yRtRR~ 151 (393)
||..||..||.+..||.
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 89999999999999987
No 14
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=53.01 E-value=17 Score=35.17 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=51.8
Q ss_pred hhcCCcccceeEEEEEeCCeEEEccCCc----eeeccC----CCEEEEEEe--CCCceEEeecCCCCc---------ccc
Q 044854 277 ITYLGPQERQVFEVVVENGKLLYRQSGI----PVETTE----GSKWIFVLS--TTRALYVGPKKKGSF---------QHS 337 (393)
Q Consensus 277 VkYLspeERe~YeV~IedGrLvy~~sG~----~vdTt~----~~kwIFVmd--tsg~LYVG~KkkG~F---------qHS 337 (393)
+-|++-.+-.-|-+-.++|+++|..... ++.+.. .+..+||.. .+|+||+-..+.|.- -++
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 3444444444444444578888876543 232211 122577774 699999987554432 122
Q ss_pred -ccC-CCCccc-------eeeeEEE--ecceEEEEcCCCCC
Q 044854 338 -SFL-SGGATT-------AAGRLVA--HNGILEAIWPYSGH 367 (393)
Q Consensus 338 -SFL-aGg~V~-------AAG~I~V--~nG~Lk~Isp~SGH 367 (393)
.+. .|.||+ .-|.+.+ .+|.|.+|...+|-
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 243 466777 7777666 58999999988874
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=47.30 E-value=7 Score=43.55 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhhhhhccC
Q 044854 132 LNAAAVKLQKVYKSYRTRRNLA 153 (393)
Q Consensus 132 ~~~AA~~iQk~Yr~yRtRR~la 153 (393)
+..||+.||+.||+|..|+...
T Consensus 790 ~r~aai~IQ~~~Rg~~aR~~~~ 811 (1080)
T 2dfs_A 790 MRRAAITIQRYVRGHQARCYAT 811 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhccc
Confidence 4467888888888887776543
No 16
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=42.26 E-value=62 Score=28.99 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=32.8
Q ss_pred CEEEEEEeCCCceEEeecCCCCccccccC-----CCCccceeeeEEEe--cceEEEEc
Q 044854 312 SKWIFVLSTTRALYVGPKKKGSFQHSSFL-----SGGATTAAGRLVAH--NGILEAIW 362 (393)
Q Consensus 312 ~kwIFVmdtsg~LYVG~KkkG~FqHSSFL-----aGg~V~AAG~I~V~--nG~Lk~Is 362 (393)
+..+||.+.+|.||+=..+.|.+....-+ ...++.+-|.|.|- +|.|..+.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 34688999999999887777776543222 22345556666664 57776653
No 17
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=36.75 E-value=29 Score=25.06 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=23.7
Q ss_pred hhcCCCChhHHHHHH-HHHHHHHhcCCCcccc
Q 044854 201 KVGKGLSKDDKAQKL-ALQHWLEAIDPRHRYG 231 (393)
Q Consensus 201 kvgkglsk~~kaq~l-~~qhwLE~iDprHRYG 231 (393)
.-|.+.|.++-||=+ +|+|.+.+| -|+|||
T Consensus 11 ~Pg~~aspEela~Y~~~Lr~Yinlv-TR~RyG 41 (41)
T 2l60_A 11 RELKKLSPEELNRYYASLRHYLNLV-TRQRYX 41 (41)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHH-TTTCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 357888999999854 599999988 478998
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=36.62 E-value=21 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhcc
Q 044854 131 ELNAAAVKLQKVYKSYRTRRNL 152 (393)
Q Consensus 131 ~~~~AA~~iQk~Yr~yRtRR~l 152 (393)
++..|+..||++.|+|=.+|+-
T Consensus 28 ~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 28 EKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3467888999999999998854
No 19
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=34.41 E-value=14 Score=40.17 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhhhhhhccCCcccchHHHHHHHhH
Q 044854 133 NAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALD 168 (393)
Q Consensus 133 ~~AA~~iQk~Yr~yRtRR~la~~~v~~~~~Ww~al~ 168 (393)
..||++||+.+|+|..||+-. ||+.+-
T Consensus 805 r~a~~~IQ~~~R~~~~~r~~~---------w~~l~~ 831 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRNWQ---------WWKLYS 831 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHTCH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchH---------HHHHHh
Confidence 578999999999999998653 888753
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.52 E-value=23 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhhhhhccC
Q 044854 132 LNAAAVKLQKVYKSYRTRRNLA 153 (393)
Q Consensus 132 ~~~AA~~iQk~Yr~yRtRR~la 153 (393)
+..||+.||..+|||..||++.
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777776554
No 21
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=31.88 E-value=28 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhcc
Q 044854 131 ELNAAAVKLQKVYKSYRTRRNL 152 (393)
Q Consensus 131 ~~~~AA~~iQk~Yr~yRtRR~l 152 (393)
++..|+..||++.|+|=.+|+-
T Consensus 30 ~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 30 DQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 3456788999999999888753
No 22
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=31.29 E-value=19 Score=38.96 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 044854 132 LNAAAVKLQKVYKSYRTRRNL 152 (393)
Q Consensus 132 ~~~AA~~iQk~Yr~yRtRR~l 152 (393)
+.++|+.||+++|+|..||+.
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999764
No 23
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=30.98 E-value=20 Score=29.15 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 044854 133 NAAAVKLQKVYKSYRTRRN 151 (393)
Q Consensus 133 ~~AA~~iQk~Yr~yRtRR~ 151 (393)
-=||..||..||.||.|++
T Consensus 63 iYA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 63 FYATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 3599999999999999874
No 24
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.79 E-value=2e+02 Score=22.85 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=27.3
Q ss_pred eEEEEEe-CCeEE-EccCCceeec--cCC-CEEEEEEeCCCceEEeecC
Q 044854 287 VFEVVVE-NGKLL-YRQSGIPVET--TEG-SKWIFVLSTTRALYVGPKK 330 (393)
Q Consensus 287 ~YeV~Ie-dGrLv-y~~sG~~vdT--t~~-~kwIFVmdtsg~LYVG~Kk 330 (393)
.|.+.+. ||.|+ |..++ .-.| ... .....+|..+|+|++-...
T Consensus 21 ~~~L~~q~dGnLvl~~~~~-vW~snt~~~~~~~~l~l~~dGNLVl~~~~ 68 (111)
T 3mez_A 21 SAAFVMQGDCNLVLYNEAG-GFQSNTHGRGVDCTLRLNNRGQLEIHSAN 68 (111)
T ss_dssp TEEEEECTTSCEEEECSSC-CEECCCTTSCSSCEEEECTTSCEEEECSS
T ss_pred CEEEEEccCCeEEEECCCC-EEECCcccCCcCEEEEEcCCCcEEEEeCC
Confidence 4777774 88775 55555 3332 211 2256788999999987553
No 25
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=30.49 E-value=23 Score=31.43 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 044854 132 LNAAAVKLQKVYKSYRTRRNL 152 (393)
Q Consensus 132 ~~~AA~~iQk~Yr~yRtRR~l 152 (393)
..+|+++||++-|+|-+||.-
T Consensus 44 R~~~~i~iQktvR~~L~rkkh 64 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRH 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 568999999999999998753
No 26
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=30.31 E-value=17 Score=25.71 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=21.8
Q ss_pred hcCCCChhHHHHH-HHHHHHHHhcCCCcccc
Q 044854 202 VGKGLSKDDKAQK-LALQHWLEAIDPRHRYG 231 (393)
Q Consensus 202 vgkglsk~~kaq~-l~~qhwLE~iDprHRYG 231 (393)
-|.+.+.++-||- -+|+|.|.+| -|+|||
T Consensus 8 Pg~~a~pEela~Y~~~Lr~Yinlv-TRqRyG 37 (37)
T 1f8p_A 8 PGEDAPAEDLARYYSALRHYINLI-TRQRYX 37 (37)
T ss_dssp CCSSCTTTTHHHHHHHHHHHHHHH-HHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 3667788888885 4699999988 478887
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=28.67 E-value=97 Score=29.37 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=48.1
Q ss_pred cceeEEEEEeCCeE-EEc-cCCceeecc----------CCCEEEEEEeCCCceEEeecCCCCccccccC--CCCccc---
Q 044854 284 ERQVFEVVVENGKL-LYR-QSGIPVETT----------EGSKWIFVLSTTRALYVGPKKKGSFQHSSFL--SGGATT--- 346 (393)
Q Consensus 284 ERe~YeV~IedGrL-vy~-~sG~~vdTt----------~~~kwIFVmdtsg~LYVG~KkkG~FqHSSFL--aGg~V~--- 346 (393)
...-|.+...++++ +|+ .+++++.|. .+++++||.|.+++|++=.-+......+=-+ .|.++.
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 34456655556665 455 345555442 1367888888888887765544444332111 222322
Q ss_pred ----eeeeEEEe---cceEEEEcCCCCC
Q 044854 347 ----AAGRLVAH---NGILEAIWPYSGH 367 (393)
Q Consensus 347 ----AAG~I~V~---nG~Lk~Isp~SGH 367 (393)
+.|+|-|. ...|..|+|.+|-
T Consensus 185 eLe~~dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 185 ELECANGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp EEEEETTEEEEEETTCSEEEEECTTTCB
T ss_pred ccEEeCCEEEEEECCCCeEEEEeCCCCc
Confidence 35777664 4678888888874
No 28
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=26.48 E-value=67 Score=22.59 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=22.0
Q ss_pred hcCCCChhHHHHH-HHHHHHHHhcCCCccc
Q 044854 202 VGKGLSKDDKAQK-LALQHWLEAIDPRHRY 230 (393)
Q Consensus 202 vgkglsk~~kaq~-l~~qhwLE~iDprHRY 230 (393)
-|.+.+.++-||- -+|+|+|.+|- |+||
T Consensus 8 PG~dA~~Eela~Y~~~LrhYiNlvT-RqRy 36 (36)
T 2bf9_A 8 PGDDAPVEDLIRFYNDLQQYLNVVT-RHRX 36 (36)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 3677888999984 56999999984 6666
No 29
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=26.34 E-value=1.4e+02 Score=25.45 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=45.6
Q ss_pred hhcCCcccce--------eEEEEEeCCeEEEccCCceeeccCCCEEEEEEeCCCceEEeecCCCCccccccCCCCcccee
Q 044854 277 ITYLGPQERQ--------VFEVVVENGKLLYRQSGIPVETTEGSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGGATTAA 348 (393)
Q Consensus 277 VkYLspeERe--------~YeV~IedGrLvy~~sG~~vdTt~~~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg~V~AA 348 (393)
+.|.+++++. .+|+.--.|.+..+ +|.|.- --=+-+.|.+|+.+.| | ++.| .|..+
T Consensus 57 l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~-dG~p~~----HlH~sl~~~~G~v~gG--------H--l~~g-~V~~t 120 (149)
T 3htn_A 57 LRFFNPKTKAYDDKTFREQMEISNLTGNISSM-NEQVYL----HLHITVGRSDYSALAG--------H--LLSA-IQNGA 120 (149)
T ss_dssp EEEECTTTCCEEEEEECSCEEEEEEEEEEEEE-TTEEEE----EEEEEEECTTSBEEEE--------E--EEEE-EEEEE
T ss_pred EEccCCCcccceeEEecCceEEEEeEEEEEcc-CCCceE----EEEEEEECCCCCEEeE--------E--eCCC-EEEEE
Confidence 3455555533 34443335777665 677631 1227788999999988 5 6666 88888
Q ss_pred eeEEEe--cceEEE-EcCCCC
Q 044854 349 GRLVAH--NGILEA-IWPYSG 366 (393)
Q Consensus 349 G~I~V~--nG~Lk~-Isp~SG 366 (393)
.+|+|. +|.+.. .+|.+|
T Consensus 121 ~Ei~i~~~~~~~~R~~D~~tG 141 (149)
T 3htn_A 121 GEFVVEDYSERISRTYNPDLG 141 (149)
T ss_dssp EEEEEEECCSCCEEEEETTTT
T ss_pred EEEEEEEcCCeeEEeeCCcCC
Confidence 899986 454433 344444
No 30
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=25.59 E-value=1e+02 Score=31.73 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=56.7
Q ss_pred hhhhcCCcccceeEEEEEeCCeEEEccCCcee------------e---ccCCCEEEEEEeCCCceEEeecCCCCccc---
Q 044854 275 QCITYLGPQERQVFEVVVENGKLLYRQSGIPV------------E---TTEGSKWIFVLSTTRALYVGPKKKGSFQH--- 336 (393)
Q Consensus 275 q~VkYLspeERe~YeV~IedGrLvy~~sG~~v------------d---Tt~~~kwIFVmdtsg~LYVG~KkkG~FqH--- 336 (393)
..+-|++-....-|-+-..+|+++|..+...- . +. .+.-|||-+.+|.||+=..+.|...-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 44456654433333333348999988643210 0 00 13358888888999888766665431
Q ss_pred -------cccCCCCccceeeeEEEe--------cceEEEEcCCCCC
Q 044854 337 -------SSFLSGGATTAAGRLVAH--------NGILEAIWPYSGH 367 (393)
Q Consensus 337 -------SSFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 367 (393)
.....+.+++.-|.+.|- +|.|..++..+|-
T Consensus 149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence 123445677777888774 5789999999886
No 31
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=24.97 E-value=1.2e+02 Score=26.97 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=24.7
Q ss_pred CceEEeecCCCCcccc---ccCCCCc-cceeeeEEEecceEEEEcCCCCCCC
Q 044854 322 RALYVGPKKKGSFQHS---SFLSGGA-TTAAGRLVAHNGILEAIWPYSGHYH 369 (393)
Q Consensus 322 g~LYVG~KkkG~FqHS---SFLaGg~-V~AAG~I~V~nG~Lk~Isp~SGHYR 369 (393)
++|++=..+.|.+--. .=+.|.+ .--.|.....||.|- |..+-||-+
T Consensus 186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~-v~~~~g~~~ 236 (276)
T 3no2_A 186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY-ICNWQGHDR 236 (276)
T ss_dssp SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE-EEEECTTCT
T ss_pred CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE-EEeccCccc
Confidence 3455555555666322 1122222 334566667788775 555668853
No 32
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=24.08 E-value=1e+02 Score=31.54 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=58.8
Q ss_pred hhhhcCCcc-cceeEEEEE-eCCeEEEccCCce-ee--------------cc--CCC---EEEEEEeCCCceEEeecCCC
Q 044854 275 QCITYLGPQ-ERQVFEVVV-ENGKLLYRQSGIP-VE--------------TT--EGS---KWIFVLSTTRALYVGPKKKG 332 (393)
Q Consensus 275 q~VkYLspe-ERe~YeV~I-edGrLvy~~sG~~-vd--------------Tt--~~~---kwIFVmdtsg~LYVG~KkkG 332 (393)
..+-|+.-. ...-|-+-. .+|+++|..+-.. .. +. .++ .-|||.+.++.||+=..+.|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445566544 445566666 6899998864211 00 00 111 12889888999998877666
Q ss_pred Ccccc---------ccCCCCccceeeeEEEe--------cceEEEEcCCCCC
Q 044854 333 SFQHS---------SFLSGGATTAAGRLVAH--------NGILEAIWPYSGH 367 (393)
Q Consensus 333 ~FqHS---------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 367 (393)
...-+ --..+.++++-|.+.|- +|.|..++..+|.
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence 65322 13345677777887774 5899999999996
No 33
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=23.52 E-value=71 Score=22.45 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=22.0
Q ss_pred hcCCCChhHHHHH-HHHHHHHHhcCCCccc
Q 044854 202 VGKGLSKDDKAQK-LALQHWLEAIDPRHRY 230 (393)
Q Consensus 202 vgkglsk~~kaq~-l~~qhwLE~iDprHRY 230 (393)
-|.+.+.++-||- -+|+|+|.+|- |+||
T Consensus 8 PG~dA~pEela~Y~~~Lr~YiNlvT-RqRy 36 (36)
T 1bba_A 8 PGDNATPEQMAQYAAELRRYINMLT-RPRY 36 (36)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHHHC-CCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh-cccC
Confidence 3677888998884 56999999984 6666
No 34
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=22.83 E-value=2.8e+02 Score=21.82 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=31.6
Q ss_pred EEEEEe-CCeEEEccCCceeeccC----CCEEEEEEeCCCceEEeecCCCCccccccCCCC
Q 044854 288 FEVVVE-NGKLLYRQSGIPVETTE----GSKWIFVLSTTRALYVGPKKKGSFQHSSFLSGG 343 (393)
Q Consensus 288 YeV~Ie-dGrLvy~~sG~~vdTt~----~~kwIFVmdtsg~LYVG~KkkG~FqHSSFLaGg 343 (393)
|.+.+. ||.|+.-.++.++=.+. ......+|..+|+|.+-.. .|..-=+||..+.
T Consensus 22 ~~l~~~~dGnlvl~~~~~~vW~sn~~~~~~~~~l~l~~dGNLVl~~~-~~~~~W~S~t~~~ 81 (110)
T 3a0c_A 22 YRLIMQGDCNFVLYDSGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQ-SNRVIWQTKTNGK 81 (110)
T ss_dssp EEEEECTTSCEEEEETTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TCCEEEECCCCCS
T ss_pred EEEEEcCCCcEEEEECCEEEEECCCCCCCCcEEEEEeCCCCEEEECC-CCcEEEecCCCCC
Confidence 555553 66664322455542211 1234678889999988754 3555556777654
No 35
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=22.79 E-value=1.6e+02 Score=30.06 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=55.0
Q ss_pred hhhhcCCcccceeEEEEEeCCeEEEccCCce-ee--------c-cC----CCEEEEEEeCCCceEEeecCCCCcccc---
Q 044854 275 QCITYLGPQERQVFEVVVENGKLLYRQSGIP-VE--------T-TE----GSKWIFVLSTTRALYVGPKKKGSFQHS--- 337 (393)
Q Consensus 275 q~VkYLspeERe~YeV~IedGrLvy~~sG~~-vd--------T-t~----~~kwIFVmdtsg~LYVG~KkkG~FqHS--- 337 (393)
..+-|+.-..-.-|-+-..+|+++|..+-.. .. . .. .+.-+||.+.+|.||+=..+.|...-+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 3445655433333333334899988864221 00 0 00 123588888888888877666654322
Q ss_pred ------ccCCCCccceeeeEEEe--------cceEEEEcCCCCC
Q 044854 338 ------SFLSGGATTAAGRLVAH--------NGILEAIWPYSGH 367 (393)
Q Consensus 338 ------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 367 (393)
....+.+++..|.+.|- +|.|..++..+|.
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 22345677777887774 4789999998885
No 36
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=22.78 E-value=2.8e+02 Score=21.81 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=27.6
Q ss_pred eEEEEEe-CCeEEEccCCceeecc-----CCCEEEEEEeCCCceEEeecC
Q 044854 287 VFEVVVE-NGKLLYRQSGIPVETT-----EGSKWIFVLSTTRALYVGPKK 330 (393)
Q Consensus 287 ~YeV~Ie-dGrLvy~~sG~~vdTt-----~~~kwIFVmdtsg~LYVG~Kk 330 (393)
.|.+++. ||.|+.-..+.++=.+ .....-.+|..+|+|.+-...
T Consensus 20 ~y~l~~q~DgNLvly~~~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~~ 69 (105)
T 4h3o_A 20 PYHFIMQDDCNLVLYDHSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDSS 69 (105)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCCCTTCCSCEEEECTTSCEEEECTT
T ss_pred CEEEEECCCCeEEEEECCEEEEEecCCCCCCccEEEEEeCCccEEEECCC
Confidence 4788774 8888644455565321 112345788999999886543
No 37
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=22.39 E-value=39 Score=31.37 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=31.2
Q ss_pred eCCeEEEccCCceeecc---CCCEEEEEEeCCCceEEeecCCCCc------cccccCCCCccc-eeeeEEE--ecceEEE
Q 044854 293 ENGKLLYRQSGIPVETT---EGSKWIFVLSTTRALYVGPKKKGSF------QHSSFLSGGATT-AAGRLVA--HNGILEA 360 (393)
Q Consensus 293 edGrLvy~~sG~~vdTt---~~~kwIFVmdtsg~LYVG~KkkG~F------qHSSFLaGg~V~-AAG~I~V--~nG~Lk~ 360 (393)
.+|+++|......+... .+++.+++-+.+|.||+=..+.|.. +........++. .-|.|.+ .+|.|..
T Consensus 27 ~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a 106 (369)
T 2hz6_A 27 RTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYV 106 (369)
T ss_dssp TTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEE
T ss_pred CCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEE
Confidence 47888777544222111 1233333336778888865543432 111112223333 2222222 4788888
Q ss_pred EcCCCCCC
Q 044854 361 IWPYSGHY 368 (393)
Q Consensus 361 Isp~SGHY 368 (393)
+++.+|--
T Consensus 107 ~D~~tG~~ 114 (369)
T 2hz6_A 107 IDLLTGEK 114 (369)
T ss_dssp ECCC----
T ss_pred EECCCCcE
Confidence 88888753
No 38
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=21.36 E-value=1.3e+02 Score=30.84 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=56.6
Q ss_pred hhhhhcCCcccceeEEEEEeCCeEEEccCCcee-e--------cc-C----CCEEEEEEeCCCceEEeecCCCCccc---
Q 044854 274 RQCITYLGPQERQVFEVVVENGKLLYRQSGIPV-E--------TT-E----GSKWIFVLSTTRALYVGPKKKGSFQH--- 336 (393)
Q Consensus 274 ~q~VkYLspeERe~YeV~IedGrLvy~~sG~~v-d--------Tt-~----~~kwIFVmdtsg~LYVG~KkkG~FqH--- 336 (393)
...+-|+.-....-|-+-..+|+++|..+...- . .. . .+.-|||.+.++.||+=..+.|...-
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 344556654433334444458999988653210 0 00 0 13468888888889887665554421
Q ss_pred -------cccCCCCccceeeeEEEe--------cceEEEEcCCCCC
Q 044854 337 -------SSFLSGGATTAAGRLVAH--------NGILEAIWPYSGH 367 (393)
Q Consensus 337 -------SSFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 367 (393)
.....+.+++.-|.+.|- +|.|..++..+|.
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 123445666677777774 5889999998886
No 39
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=21.06 E-value=4.3e+02 Score=23.29 Aligned_cols=87 Identities=22% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCcccceeEEEE-EeCCeE-EEccCCceeeccC-------------CCEEEEEEeCC-CceEEeecCCCCccccccCCCC
Q 044854 280 LGPQERQVFEVV-VENGKL-LYRQSGIPVETTE-------------GSKWIFVLSTT-RALYVGPKKKGSFQHSSFLSGG 343 (393)
Q Consensus 280 LspeERe~YeV~-IedGrL-vy~~sG~~vdTt~-------------~~kwIFVmdts-g~LYVG~KkkG~FqHSSFLaGg 343 (393)
++|+...-|-.- ..+++| +|+.+|..+.+.. ...+--.+|.+ |+|||.....+.++-=..-.|.
T Consensus 150 ~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 150 VEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp ECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Q ss_pred cccee----------------eeEEEecc----------eEEEEcCCCC
Q 044854 344 ATTAA----------------GRLVAHNG----------ILEAIWPYSG 366 (393)
Q Consensus 344 ~V~AA----------------G~I~V~nG----------~Lk~Isp~SG 366 (393)
.+... |.+.+.+| .|..+...+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g 278 (329)
T 3fvz_A 230 FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG 278 (329)
T ss_dssp EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC
No 40
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=20.91 E-value=2.1e+02 Score=28.67 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=57.0
Q ss_pred hhhhcCCcc-cceeEEEEE-eCCeEEEccCCce------------eecc--CCCEEEEEEeCCCceEEeecCCCCcccc-
Q 044854 275 QCITYLGPQ-ERQVFEVVV-ENGKLLYRQSGIP------------VETT--EGSKWIFVLSTTRALYVGPKKKGSFQHS- 337 (393)
Q Consensus 275 q~VkYLspe-ERe~YeV~I-edGrLvy~~sG~~------------vdTt--~~~kwIFVmdtsg~LYVG~KkkG~FqHS- 337 (393)
..+-|+.-. ...-|-+-. .+|+++|..+-.. +... -.+.-+||.+.++.||+=..+.|...-+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 445566654 455566666 6899998854211 0000 0133588888888888876655544321
Q ss_pred --------ccCCCCccceeeeEEEe--------cceEEEEcCCCCC
Q 044854 338 --------SFLSGGATTAAGRLVAH--------NGILEAIWPYSGH 367 (393)
Q Consensus 338 --------SFLaGg~V~AAG~I~V~--------nG~Lk~Isp~SGH 367 (393)
--....+++.-|.+.|- +|.|..+++.+|.
T Consensus 142 ~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 142 EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred cCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 12334566667777764 5799999999986
Done!