Query 044855
Match_columns 279
No_of_seqs 170 out of 2493
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 07:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5E-30 1.1E-34 239.7 18.2 268 2-277 147-430 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.3E-30 9.4E-35 240.1 17.6 274 1-278 75-383 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.4E-28 5.3E-33 202.6 5.1 266 1-274 155-439 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.3E-28 2.9E-33 204.1 1.4 272 4-279 111-420 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4.1E-25 8.8E-30 185.4 -2.6 264 1-277 13-364 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.6E-24 3.4E-29 182.0 -2.6 258 4-269 64-379 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.4E-23 3E-28 167.4 -1.9 102 161-264 431-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.8 2.3E-23 4.9E-28 166.2 -4.9 179 10-202 105-288 (565)
9 PLN03210 Resistant to P. syrin 99.8 2.3E-19 5E-24 169.4 17.9 115 146-262 778-904 (1153)
10 PRK15387 E3 ubiquitin-protein 99.8 6.5E-19 1.4E-23 156.5 13.5 244 1-273 207-467 (788)
11 PLN03210 Resistant to P. syrin 99.8 2.4E-18 5.2E-23 162.5 17.4 258 1-278 617-896 (1153)
12 KOG4237 Extracellular matrix p 99.8 4.9E-21 1.1E-25 152.5 -5.6 125 2-128 74-200 (498)
13 cd00116 LRR_RI Leucine-rich re 99.8 1.8E-19 3.9E-24 148.6 1.8 259 1-262 4-318 (319)
14 KOG4237 Extracellular matrix p 99.7 8E-20 1.7E-24 145.7 -2.4 251 19-278 67-349 (498)
15 KOG0618 Serine/threonine phosp 99.7 3.1E-19 6.8E-24 155.8 -1.5 255 2-277 163-432 (1081)
16 PRK15370 E3 ubiquitin-protein 99.7 8E-17 1.7E-21 143.9 11.9 231 2-264 185-428 (754)
17 cd00116 LRR_RI Leucine-rich re 99.7 9.6E-18 2.1E-22 138.3 0.8 242 23-266 2-293 (319)
18 PRK15370 E3 ubiquitin-protein 99.6 8E-16 1.7E-20 137.6 10.1 223 19-273 178-409 (754)
19 PRK15387 E3 ubiquitin-protein 99.6 3.4E-15 7.5E-20 133.1 13.7 221 19-278 201-448 (788)
20 KOG0618 Serine/threonine phosp 99.6 5.2E-18 1.1E-22 148.3 -5.8 230 19-262 241-487 (1081)
21 KOG0617 Ras suppressor protein 99.6 2.3E-17 5E-22 117.7 -2.7 166 65-275 30-196 (264)
22 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.1E-22 118.1 -3.4 159 16-187 30-194 (264)
23 KOG1909 Ran GTPase-activating 99.3 2.8E-13 6.1E-18 107.0 0.1 234 14-264 25-311 (382)
24 KOG3207 Beta-tubulin folding c 99.2 2.7E-12 5.9E-17 104.4 1.0 179 16-201 118-313 (505)
25 KOG1259 Nischarin, modulator o 99.2 3.3E-12 7.2E-17 99.5 1.0 35 94-128 285-319 (490)
26 PF14580 LRR_9: Leucine-rich r 99.2 2.6E-11 5.6E-16 89.6 4.7 128 91-258 17-147 (175)
27 KOG1909 Ran GTPase-activating 99.2 2E-12 4.2E-17 102.4 -1.8 200 1-202 36-283 (382)
28 KOG0532 Leucine-rich repeat (L 99.2 2.7E-12 5.8E-17 107.7 -1.8 186 47-262 79-271 (722)
29 KOG1259 Nischarin, modulator o 99.1 3.1E-11 6.8E-16 94.1 2.7 120 141-264 279-412 (490)
30 KOG3207 Beta-tubulin folding c 99.1 8.6E-12 1.9E-16 101.5 -1.0 155 42-201 120-283 (505)
31 KOG0532 Leucine-rich repeat (L 99.1 4.2E-12 9.1E-17 106.6 -2.9 168 92-272 74-254 (722)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3.1E-15 85.7 5.0 131 15-154 15-148 (175)
33 COG4886 Leucine-rich repeat (L 99.1 2.4E-10 5.2E-15 97.2 5.7 193 23-244 97-294 (394)
34 PF13855 LRR_8: Leucine rich r 99.0 5.9E-10 1.3E-14 68.0 3.4 60 204-263 2-61 (61)
35 PLN03150 hypothetical protein; 98.9 2.6E-09 5.6E-14 95.4 6.1 92 167-272 420-511 (623)
36 PF13855 LRR_8: Leucine rich r 98.9 3.8E-09 8.3E-14 64.4 4.5 59 19-78 1-59 (61)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.9E-14 98.9 4.0 148 17-173 521-676 (889)
38 KOG2982 Uncharacterized conser 98.8 2.4E-09 5.1E-14 83.6 2.7 211 12-241 38-263 (418)
39 PLN03150 hypothetical protein; 98.8 1E-08 2.2E-13 91.6 6.6 107 20-128 419-527 (623)
40 COG4886 Leucine-rich repeat (L 98.8 7.2E-09 1.6E-13 88.1 5.3 169 90-269 113-295 (394)
41 KOG4658 Apoptotic ATPase [Sign 98.8 3.1E-09 6.7E-14 97.4 3.1 88 13-103 565-652 (889)
42 KOG2120 SCF ubiquitin ligase, 98.8 1.2E-10 2.7E-15 90.6 -5.1 174 43-238 185-374 (419)
43 KOG2120 SCF ubiquitin ligase, 98.8 5.9E-11 1.3E-15 92.4 -6.8 174 20-199 186-373 (419)
44 KOG0531 Protein phosphatase 1, 98.6 1.3E-08 2.8E-13 86.9 1.0 173 14-202 90-268 (414)
45 COG5238 RNA1 Ran GTPase-activa 98.6 4.8E-09 1E-13 80.9 -1.5 186 15-202 26-255 (388)
46 KOG4341 F-box protein containi 98.5 2E-09 4.4E-14 87.5 -6.0 243 16-262 161-437 (483)
47 KOG0531 Protein phosphatase 1, 98.4 3.4E-08 7.3E-13 84.4 -0.5 164 89-264 91-268 (414)
48 KOG2982 Uncharacterized conser 98.4 1.1E-07 2.5E-12 74.4 1.1 204 41-268 43-266 (418)
49 KOG1859 Leucine-rich repeat pr 98.3 9.3E-09 2E-13 89.4 -6.8 179 36-240 102-292 (1096)
50 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.2E-11 49.4 2.8 37 227-264 1-37 (44)
51 KOG1644 U2-associated snRNP A' 98.2 2.1E-06 4.6E-11 63.7 4.7 108 18-128 41-152 (233)
52 KOG1644 U2-associated snRNP A' 98.2 5.6E-06 1.2E-10 61.5 6.0 127 22-156 22-150 (233)
53 PF12799 LRR_4: Leucine Rich r 98.1 4.2E-06 9.1E-11 46.8 3.6 37 19-56 1-37 (44)
54 KOG3665 ZYG-1-like serine/thre 98.1 9.2E-07 2E-11 79.4 1.2 127 68-202 122-263 (699)
55 KOG4341 F-box protein containi 98.1 1.1E-07 2.3E-12 77.7 -5.2 237 16-256 187-457 (483)
56 COG5238 RNA1 Ran GTPase-activa 98.0 2.7E-06 5.9E-11 66.1 1.7 225 38-264 25-316 (388)
57 KOG3665 ZYG-1-like serine/thre 98.0 1.7E-06 3.6E-11 77.8 0.6 132 43-180 122-265 (699)
58 KOG1859 Leucine-rich repeat pr 97.9 1.7E-07 3.6E-12 81.9 -7.1 119 3-129 172-292 (1096)
59 PF13306 LRR_5: Leucine rich r 97.9 9.5E-05 2.1E-09 52.3 7.9 109 10-125 3-112 (129)
60 KOG1947 Leucine rich repeat pr 97.7 1.8E-06 3.9E-11 75.3 -3.8 112 17-128 186-307 (482)
61 KOG4579 Leucine-rich repeat (L 97.6 3.9E-06 8.6E-11 58.5 -2.4 86 165-268 53-139 (177)
62 KOG4579 Leucine-rich repeat (L 97.6 7.8E-06 1.7E-10 57.0 -1.0 93 166-273 28-121 (177)
63 PRK15386 type III secretion pr 97.6 0.00044 9.6E-09 58.0 8.7 75 16-104 49-123 (426)
64 PRK15386 type III secretion pr 97.6 0.00029 6.4E-09 59.1 7.5 125 112-261 48-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.4 4.8E-05 1E-09 58.9 0.7 115 11-127 35-154 (260)
66 KOG2739 Leucine-rich acidic nu 97.3 0.00016 3.4E-09 56.1 2.9 113 35-153 35-150 (260)
67 PF13306 LRR_5: Leucine rich r 97.3 0.0014 3.1E-08 46.2 6.9 106 6-118 22-128 (129)
68 PF00560 LRR_1: Leucine Rich R 97.2 0.00025 5.3E-09 33.1 1.6 22 252-274 1-22 (22)
69 KOG2123 Uncharacterized conser 97.1 2.3E-05 4.9E-10 61.3 -3.9 81 43-129 19-101 (388)
70 KOG1947 Leucine rich repeat pr 96.9 0.00017 3.6E-09 63.0 -1.1 208 14-239 209-439 (482)
71 KOG2123 Uncharacterized conser 96.7 3.3E-05 7.2E-10 60.4 -5.6 101 18-123 18-124 (388)
72 PF13504 LRR_7: Leucine rich r 95.9 0.0045 9.7E-08 26.7 1.0 14 251-264 1-14 (17)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0086 1.9E-07 27.7 1.2 20 20-40 1-20 (22)
74 KOG4308 LRR-containing protein 95.4 4.2E-05 9.1E-10 66.1 -12.0 105 161-265 168-304 (478)
75 KOG3864 Uncharacterized conser 95.3 0.0019 4.1E-08 48.4 -1.9 80 45-125 103-185 (221)
76 KOG3864 Uncharacterized conser 95.1 0.0028 6.1E-08 47.5 -1.5 83 165-260 101-185 (221)
77 PF13516 LRR_6: Leucine Rich r 94.3 0.014 3.1E-07 27.6 0.2 18 227-244 2-19 (24)
78 smart00370 LRR Leucine-rich re 91.9 0.16 3.5E-06 24.3 2.0 21 93-113 2-22 (26)
79 smart00369 LRR_TYP Leucine-ric 91.9 0.16 3.5E-06 24.3 2.0 21 93-113 2-22 (26)
80 KOG4308 LRR-containing protein 90.5 0.0028 6.1E-08 55.0 -8.7 79 164-242 203-305 (478)
81 smart00364 LRR_BAC Leucine-ric 90.2 0.18 4E-06 24.3 1.1 19 251-270 2-20 (26)
82 KOG0473 Leucine-rich repeat pr 85.3 0.025 5.5E-07 43.6 -5.4 98 3-105 26-123 (326)
83 smart00368 LRR_RI Leucine rich 84.1 0.5 1.1E-05 23.2 0.7 19 227-245 2-20 (28)
84 KOG0473 Leucine-rich repeat pr 80.9 0.12 2.6E-06 40.0 -3.2 54 1-56 71-124 (326)
85 KOG3763 mRNA export factor TAP 72.4 1.8 3.8E-05 38.0 1.0 64 41-105 216-282 (585)
86 KOG4242 Predicted myosin-I-bin 71.3 24 0.00052 30.8 7.3 33 167-199 356-390 (553)
87 smart00367 LRR_CC Leucine-rich 69.4 2.8 6.2E-05 19.9 1.0 15 250-264 1-16 (26)
88 smart00365 LRR_SD22 Leucine-ri 69.2 4.1 8.9E-05 19.6 1.5 13 20-32 3-15 (26)
89 KOG3763 mRNA export factor TAP 63.4 5.7 0.00012 35.0 2.3 16 227-242 270-285 (585)
90 TIGR00864 PCC polycystin catio 52.0 12 0.00025 39.9 2.6 32 1-32 1-32 (2740)
91 smart00446 LRRcap occurring C- 21.8 33 0.00071 16.5 0.1 13 15-27 9-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=5e-30 Score=239.68 Aligned_cols=268 Identities=34% Similarity=0.489 Sum_probs=140.5
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
|++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.. +..+.++++|++|++++|...
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccC
Confidence 4555555556666666666666666666665556666666666666666666554322 244555666666666655433
Q ss_pred ccccCCCCCCCCceeEEEecCCcC-cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---- 156 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---- 156 (279)
... +..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|
T Consensus 226 ~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 226 GEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP------IPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcC-ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc------CchhHhhccCcCEEECcCCeecc
Confidence 222 23345566666666666655 34555555666666666666555422 2234445555555555544
Q ss_pred -CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhc
Q 044855 157 -IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINE 225 (279)
Q Consensus 157 -~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~ 225 (279)
.|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.. +|+.|++++|++.+.+|..+..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 33344455555555555555544444445555555555555554431 4445555555544444444444
Q ss_pred CcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855 226 LSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW 277 (279)
Q Consensus 226 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l 277 (279)
+++|+.+++++|.+.+..|..+..+++|+.|++++|.+++.+|..|..++.|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 4444444444444444444444444455555555555544444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=4.3e-30 Score=240.14 Aligned_cols=274 Identities=36% Similarity=0.528 Sum_probs=172.1
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccc-cCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-TNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
||+++.+.+.++.+|+.+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..+. ..+++|++|++++|.
T Consensus 75 ~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~ 151 (968)
T PLN00113 75 DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM 151 (968)
T ss_pred EecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCc
Confidence 467788888888888888888888888888877777654 4788888888888877643332 334566666666554
Q ss_pred ccccccCCCCCCCCceeEEEecCCcC-cccChhhhcCCCccEEEeeCCcccccCCC------------------CCcCcc
Q 044855 80 NMLQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPI------------------CGKMDD 140 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~ 140 (279)
..... +..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+.+..|. ....+.
T Consensus 152 ~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 152 LSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ccccC-ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 32222 23345556666666666554 34455555555666666655554422110 012334
Q ss_pred hhhccCcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cc
Q 044855 141 GLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KL 205 (279)
Q Consensus 141 ~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L 205 (279)
.+..+++|++|+++++ .|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.. +|
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 4555556666665544 34455556666666666666655555556666666666666665432 56
Q ss_pred eEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 206 ITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|+.++.++.|+
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 6667777766666666666677777777777777666777777777777777777777777777666655543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.4e-28 Score=202.59 Aligned_cols=266 Identities=25% Similarity=0.267 Sum_probs=182.2
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
|||.|.|+.+.-..|..-.++++|+|++|.|+..-..+|.++.+|.+|.++.|.++ ..+...|+++++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence 45556666555555655566666666666666555555666666666666666665 55555666666666666655542
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC---
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--- 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--- 156 (279)
....--.|+++++|+.+.+..|++..+.. .+..+.+++.|+++.|.+.. --...+.++++|+.|+++.|
T Consensus 234 -rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 234 -RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------VNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred -eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------hhcccccccchhhhhccchhhhh
Confidence 22223345666666666666666665554 34456777777777776652 22356677777777777776
Q ss_pred --CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCC---CCch
Q 044855 157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFG---RIPY 221 (279)
Q Consensus 157 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~---~~~~ 221 (279)
.++...-+++|++|+++.|.++...+..|..+..|+.|++++|.+.. +|+.|+++.|.+.. ....
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 23445566778888888888877677777777888888888887654 88888888888743 3345
Q ss_pred hhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCC
Q 044855 222 QINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNV 274 (279)
Q Consensus 222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 274 (279)
.|..+++|+.|.+.||++....-..|.+++.|+.||+.+|.+...-|.+|..+
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 67788999999999999986666788889999999999999887888888876
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-28 Score=204.15 Aligned_cols=272 Identities=24% Similarity=0.294 Sum_probs=172.0
Q ss_pred CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855 4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ 83 (279)
Q Consensus 4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 83 (279)
.|.++ .+|....-..+|+.|+|.+|.|+......+.-++.|++||++.|.++ .++...+..-.++++|+++.|. +..
T Consensus 111 ~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~-It~ 187 (873)
T KOG4194|consen 111 KNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNR-ITT 187 (873)
T ss_pred cchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccc-ccc
Confidence 34444 44444444444555555555554433344444555555555555444 3333444444445555554443 333
Q ss_pred ccCCCCCCCCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCC------------------CCcCcchhhc
Q 044855 84 VKTESWHPTSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPI------------------CGKMDDGLRS 144 (279)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~~~~~ 144 (279)
+....|..+.+|.+|.++.|.++.+|.. +.++++|+.|++..|.+...... ...-...|..
T Consensus 188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 3344444444455555555555444432 22244455454444443311000 0122346677
Q ss_pred cCcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEE
Q 044855 145 STSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLD 209 (279)
Q Consensus 145 ~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~ 209 (279)
+.++++|+++.| -..++.++++|+.|+++.|.+...-+..+..+++|++|+++.|.++. .|+.|+
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 778888888766 23456678899999999999988788888899999999999998875 788999
Q ss_pred eecCccCCCCchhhhcCcCCcEEEccCCcccccC---ChhhhcccCCcEEEccCCEeeeecC-ccccCCccccC
Q 044855 210 LRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI---PNELCQLAKLRIMDLSNNIFSGSIP-SCLGNVSFWRE 279 (279)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~ 279 (279)
++.|++......+|..+++|+.||+++|.+...+ ...|.++++|+.|++.||++. .+| .+|..++.|++
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEH 420 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccce
Confidence 9999998777778888999999999999876543 446778999999999999998 555 58888887764
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.1e-25 Score=185.43 Aligned_cols=264 Identities=26% Similarity=0.412 Sum_probs=158.9
Q ss_pred CCCCCcCc-CCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccC-----------------------
Q 044855 1 DLSSNNFE-GHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ----------------------- 56 (279)
Q Consensus 1 ~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------- 56 (279)
|+++|.++ +.-|.....+.+++.|.|...++. .+|..+..+.+|++|.+.+|++.
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK 91 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK 91 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc
Confidence 56777777 455666666666666666666655 56666666666666666555543
Q ss_pred cccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhh-cCCCccEEEeeCCcccccCCCC
Q 044855 57 GTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLL-QQDHLKFLDLSHNKLVGNFPIC 135 (279)
Q Consensus 57 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~ 135 (279)
..-.+..+..+..|..|++++|+. .+.| ..+....++-+|++++|.|+.+|..++ ++.-|-.|++++|++.
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL-~EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe------ 163 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQL-REVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE------ 163 (1255)
T ss_pred cCCCCchhcccccceeeecchhhh-hhcc-hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh------
Confidence 222233445555556666655542 2222 223444555566666666666655333 3455555555555554
Q ss_pred CcCcchhhccCcccceeccCC------------------------------CCccccCCCCCcEEEccccEeeeeccccc
Q 044855 136 GKMDDGLRSSTSLEGLDISGN------------------------------IPNWIGNISTLRVLLMSKNYLEANIPVQL 185 (279)
Q Consensus 136 ~~~~~~~~~~~~L~~l~l~~~------------------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 185 (279)
.++..+..+..|+.|+++++ +|..+..+.+|+.++++.|.+.. .|..+
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHH
Confidence 34444455555555555543 45555566677888888887776 77788
Q ss_pred cCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc----------------
Q 044855 186 NHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ---------------- 240 (279)
Q Consensus 186 ~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---------------- 240 (279)
..+++|+.|++++|.++. +|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++
T Consensus 242 y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 888888888888888775 7888888888774 45666666666665555555533
Q ss_pred --------ccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855 241 --------GHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW 277 (279)
Q Consensus 241 --------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l 277 (279)
+.+|+.++.|+.|+.|.++.|++. ++|+++.-++-|
T Consensus 321 f~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 321 FHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred HHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 145555666666666666666655 566666555443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.6e-24 Score=181.97 Aligned_cols=258 Identities=24% Similarity=0.356 Sum_probs=165.7
Q ss_pred CCcCcCCCCccccCCCCccEEEeeCCccc-ccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855 4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML 82 (279)
Q Consensus 4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 82 (279)
+|++. .+...++.+|.|+.+.++.|.+. +-+|..+..+..|.+|++++|++. .. +..+....++-+|++++|. +.
T Consensus 64 HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev-P~~LE~AKn~iVLNLS~N~-Ie 139 (1255)
T KOG0444|consen 64 HNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV-PTNLEYAKNSIVLNLSYNN-IE 139 (1255)
T ss_pred hhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc-chhhhhhcCcEEEEcccCc-cc
Confidence 44444 34445556666666666666553 234555566777777777777664 22 2445555666667776664 45
Q ss_pred cccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccc----cCC---------------CCCcCcchhh
Q 044855 83 QVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVG----NFP---------------ICGKMDDGLR 143 (279)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~---------------~~~~~~~~~~ 143 (279)
.+|...|-+++.|-.|++++|.++.+|..+.++..|+.|.+++|.+.- ..| ....++.++.
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 566666666666666677777666666666666666666666665320 000 0234455666
Q ss_pred ccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------------
Q 044855 144 SSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------------- 203 (279)
Q Consensus 144 ~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------------- 203 (279)
.+.+|..+|++.+ +|+.+..+++|+.|++++|.++. .......+.+|+.|+++.|+++.
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence 6777777777755 45556666777777777776665 22333445555666666665543
Q ss_pred ------------------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855 204 ------------------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 204 ------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (279)
+|+.+..++|.+ +.+|+.++.|+.|+.|.++.|++- ..|+.+.-++.|+.||++.|+-.
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL- 375 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL- 375 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-
Confidence 455555555554 467888899999999999999987 78999999999999999999966
Q ss_pred ecCc
Q 044855 266 SIPS 269 (279)
Q Consensus 266 ~~p~ 269 (279)
.+|+
T Consensus 376 VMPP 379 (1255)
T KOG0444|consen 376 VMPP 379 (1255)
T ss_pred cCCC
Confidence 4554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.4e-23 Score=167.44 Aligned_cols=102 Identities=28% Similarity=0.418 Sum_probs=78.2
Q ss_pred ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855 161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHV 231 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 231 (279)
+..+++|..|++++|.+.+ .|..++.+-.|+.++++.|.+.. .++.+-.++|++...-+..+..|.+|++
T Consensus 431 l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 3456677777777776665 66666677777777777776653 4555566667775544555888999999
Q ss_pred EEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
||+.+|.+. .+|..+++|.+|+.|++.||+++
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999998 88889999999999999999998
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2.3e-23 Score=166.20 Aligned_cols=179 Identities=26% Similarity=0.374 Sum_probs=95.8
Q ss_pred CCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCC
Q 044855 10 HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESW 89 (279)
Q Consensus 10 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 89 (279)
.+|.++..++++..++.+.|.+. ..++.+..+..+..++..+|+++ .. +..+.++.++..+++.++. ....+...+
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-sl-p~~~~~~~~l~~l~~~~n~-l~~l~~~~i 180 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SL-PEDMVNLSKLSKLDLEGNK-LKALPENHI 180 (565)
T ss_pred hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cC-chHHHHHHHHHHhhccccc-hhhCCHHHH
Confidence 33444444444444444444433 33333334444444444444333 11 1334444455555554443 222222222
Q ss_pred CCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccc-cCC
Q 044855 90 HPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWI-GNI 164 (279)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~-~~~ 164 (279)
. ++.|++++...|.++.+|..+..+.+|+.|++.+|++. .++ .|.++..|++++++.+ +|... ..+
T Consensus 181 ~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-------~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 181 A-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-------FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred H-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-------cCC-CCCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 3 66777788877777888888888888888888888765 333 5566666666666655 22222 245
Q ss_pred CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS 202 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 202 (279)
+++.+||+.+|.+++ .|..+.-+++|+.||+++|.++
T Consensus 252 ~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred ccceeeecccccccc-CchHHHHhhhhhhhcccCCccc
Confidence 666666666666655 5555555566666666666554
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.3e-19 Score=169.38 Aligned_cols=115 Identities=25% Similarity=0.340 Sum_probs=59.6
Q ss_pred CcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc-------ccceEEEeecC
Q 044855 146 TSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS-------SKLITLDLRDN 213 (279)
Q Consensus 146 ~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-------~~L~~L~l~~~ 213 (279)
++|+.|+++++ +|..++++++|+.|++++|.....+|... .+++|+.|++++|... .+++.|++++|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 34555555544 44555555666666666553222233332 4555666666554321 14555666665
Q ss_pred ccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855 214 KFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 214 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
.+. .+|..+..+++|+.|++++|.-...++..+..++.|+.+++++|.
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 553 345555556666666666544222344445555566666666664
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=6.5e-19 Score=156.52 Aligned_cols=244 Identities=24% Similarity=0.291 Sum_probs=157.0
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
|++++.++ .+|..+. ++|+.|.+.+|.++ .+|. ..++|++|++++|.++ .++. ..++|+.|++++|..
T Consensus 207 dLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 207 NVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPL 274 (788)
T ss_pred EcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceeeccCCch
Confidence 57788888 5666554 47999999999988 5664 3588999999999887 3331 235778888877753
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCc---------chhh-ccCcccc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMD---------DGLR-SSTSLEG 150 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------~~~~-~~~~L~~ 150 (279)
..++. ...+|+.|++.+|.+..+|.. .++|+.|++++|.+.........+. ..+. -..+|+.
T Consensus 275 -~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~ 346 (788)
T PRK15387 275 -THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQE 346 (788)
T ss_pred -hhhhh----chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccce
Confidence 22221 124566777777777666642 3567777777776653211000000 0000 0135666
Q ss_pred eeccCCCCcccc-CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCchhh
Q 044855 151 LDISGNIPNWIG-NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQI 223 (279)
Q Consensus 151 l~l~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~~~~ 223 (279)
|++++|-...+. ...+|+.|++++|.+.. +|.. .++|+.|++++|.+.. +|+.|++++|.+.. +|..
T Consensus 347 LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss-IP~l- 420 (788)
T PRK15387 347 LSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPML- 420 (788)
T ss_pred EecCCCccCCCCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcCCC-CCcc-
Confidence 666655222221 12355666666666654 3332 2467888888887653 78888888888754 4543
Q ss_pred hcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855 224 NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273 (279)
Q Consensus 224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 273 (279)
..+|+.|++++|+++ .+|..++.++.|+.|++++|++++..|..+..
T Consensus 421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 246788999999998 78888999999999999999999888876644
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2.4e-18 Score=162.54 Aligned_cols=258 Identities=21% Similarity=0.255 Sum_probs=199.6
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
+++++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|......+ ..+..+++|+.|++++|..
T Consensus 617 ~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 617 QMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCC
Confidence 46778887 6778889999999999998765546765 7889999999999997653443 5788999999999999887
Q ss_pred cccccCCCCCCCCceeEEEecCCcC-cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC--
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQL-HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-- 157 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-- 157 (279)
...++... .+++|+.|++++|.. +.+|.. ..+|++|+++++.+.. ++..+ .+++|++|++.++.
T Consensus 694 L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-------lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 694 LEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-------FPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred cCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-------ccccc-cccccccccccccchh
Confidence 77776542 688999999999854 555542 4679999999988652 22222 46777777776521
Q ss_pred ----------CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc---------ccceEEEeecCccCCC
Q 044855 158 ----------PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS---------SKLITLDLRDNKFFGR 218 (279)
Q Consensus 158 ----------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~---------~~L~~L~l~~~~~~~~ 218 (279)
+......++|+.|++++|.....+|..+.++++|+.|++++|..- .+|+.|++++|.....
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 111223478999999999766668888999999999999987521 2789999999976665
Q ss_pred CchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 219 IPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 219 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
+|.. ..+|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..++.|+
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 5543 368999999999998 7888999999999999999885557888777766654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=4.9e-21 Score=152.51 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=90.7
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccC-cccCcccchhhhcccccceeeeecCCcc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSS-INFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
|..|.|+.+++.+|+.+++|+.|+|++|.|+..-|++|++++.+.+|.+.+ |.|+ .++...|.++..++.|.+..+.
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~- 151 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANH- 151 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhh-
Confidence 456777777778888888888888888888777777888888887777666 6665 6666777777777777765443
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKL 128 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 128 (279)
...+..+.+..++++..|.+.+|.++.++. .+..+..++.+++..|.+
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 445555667777778888888887777765 555667777777777663
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.8e-19 Score=148.61 Aligned_cols=259 Identities=25% Similarity=0.264 Sum_probs=165.2
Q ss_pred CCCCCcCc-CCCCccccCCCCccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCc--c---cchhhhcccccc
Q 044855 1 DLSSNNFE-GHLPQCLNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQG--T---FSINSLANHSKL 70 (279)
Q Consensus 1 ~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~--~---~~~~~~~~~~~L 70 (279)
+|..+.+. ...+..+..+++|++|+++++.++. .++..+...+.+++++++++.+.. . .....+..+++|
T Consensus 4 ~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 83 (319)
T cd00116 4 SLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83 (319)
T ss_pred ccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence 45666666 3445666778889999999998853 345556778889999999987652 1 112345678899
Q ss_pred eeeeecCCcccccccCCCCCCC---CceeEEEecCCcCc-----ccChhhhcC-CCccEEEeeCCcccccCCCCCcCcch
Q 044855 71 EVLLLSSGSNMLQVKTESWHPT---SQLKVLKLSDCQLH-----VIPSFLLQQ-DHLKFLDLSHNKLVGNFPICGKMDDG 141 (279)
Q Consensus 71 ~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~-----~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~ 141 (279)
+.|+++++...... ...+..+ ++|++|++++|.+. .+...+..+ ++|++|++++|.+..... ..+...
T Consensus 84 ~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~~~~~ 160 (319)
T cd00116 84 QELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC--EALAKA 160 (319)
T ss_pred eEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH--HHHHHH
Confidence 99999887653211 1122222 55999999998875 223345566 889999999998763211 133445
Q ss_pred hhccCcccceeccCCCCc---------cccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcc-----
Q 044855 142 LRSSTSLEGLDISGNIPN---------WIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSS----- 203 (279)
Q Consensus 142 ~~~~~~L~~l~l~~~~~~---------~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~----- 203 (279)
+..+..|++++++++-.. .+...++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 666778888888877322 233456888888888877542 23345667778888887776552
Q ss_pred ----------cceEEEeecCccCCC----CchhhhcCcCCcEEEccCCccccc----CChhhhcc-cCCcEEEccCCE
Q 044855 204 ----------KLITLDLRDNKFFGR----IPYQINELSNLHVLLLRGNSLQGH----IPNELCQL-AKLRIMDLSNNI 262 (279)
Q Consensus 204 ----------~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~ 262 (279)
.|+.|++++|.+++. +...+..+++|+.+++++|.+++. ..+.+... +.|+.+++.+|+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 566666666666422 222334456666777777666644 22233333 456666666654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=8e-20 Score=145.68 Aligned_cols=251 Identities=18% Similarity=0.217 Sum_probs=169.9
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
+...+|.|..|+|+...+.+|+.+++|+.|+|++|.|+ .+.+..|..+..+..|-+.++..+..++...|+++..++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45788999999999888889999999999999999998 77779999999999888888777899999999999999999
Q ss_pred EecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC------Ccc-----------
Q 044855 99 KLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI------PNW----------- 160 (279)
Q Consensus 99 ~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~------~~~----------- 160 (279)
.+..|.+.-+. ..+..++++..|.+.+|.+.... ...+..+.+++.+.+..+- ..|
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~------~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC------KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhc------cccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 99999886554 46778899999999999876322 2366777777777766431 011
Q ss_pred ccCCCCCcEEEccccEeeeeccccccCCCCccEE--eccCCcCc------------ccceEEEeecCccCCCCchhhhcC
Q 044855 161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELI--DIFENSLS------------SKLITLDLRDNKFFGRIPYQINEL 226 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l--~l~~~~~~------------~~L~~L~l~~~~~~~~~~~~~~~~ 226 (279)
++...-.....+....+....+..+.. .++.+ .++..... ++|+.|++++|+++++-..+|.+.
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 111111111111111111111111100 01111 00111100 156666777777777777777777
Q ss_pred cCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
..+++|.+..|++...-..+|.++..|+.|++.+|+++...|.+|..+.+|.
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 7777888877777655556677777777788888887777777777666553
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=3.1e-19 Score=155.77 Aligned_cols=255 Identities=25% Similarity=0.299 Sum_probs=162.7
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
+..|.+.+..+..+..+.+ .|+|+.|.+. . ..+.++++|+.+....|.+.. .-..-+.++.|..++|...
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~-----l~~~g~~l~~L~a~~n~l~ 232 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSE-----LEISGPSLTALYADHNPLT 232 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccce-----EEecCcchheeeeccCcce
Confidence 4445555555555555555 5666666654 1 234566666666666665541 1123356777777777644
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----C
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----I 157 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~ 157 (279)
.... -..-.+|++++++.+.+..+|.++..+++|+.+....|.+. .++..+....+|+++.+..| +
T Consensus 233 ~~~~---~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-------~lp~ri~~~~~L~~l~~~~nel~yi 302 (1081)
T KOG0618|consen 233 TLDV---HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-------ALPLRISRITSLVSLSAAYNELEYI 302 (1081)
T ss_pred eecc---ccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-------hhHHHHhhhhhHHHHHhhhhhhhhC
Confidence 2111 12235899999999999999999999999999999999886 66678888888999888766 6
Q ss_pred CccccCCCCCcEEEccccEeeeeccccccCCCC-ccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcC
Q 044855 158 PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKS-LELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINEL 226 (279)
Q Consensus 158 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~ 226 (279)
+........|++|++..|.+.......+..... ++.++.+.+.+.. .|+.|++.+|.+++.....+.++
T Consensus 303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 667777889999999999887733333333332 4444444444332 45566666666666555555666
Q ss_pred cCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855 227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW 277 (279)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l 277 (279)
++|+.|++++|++.......+.+++.|++|+++||+++ .+|++...++.|
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence 66666666666665444445555566666666666666 555555555444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=8e-17 Score=143.89 Aligned_cols=231 Identities=21% Similarity=0.341 Sum_probs=162.2
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.++ .+|..+. ++++.|++++|+++ .+|..+. ++|++|++++|.+. .++. .+ ...|+.|++++|..
T Consensus 185 L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l--~~~L~~L~Ls~N~L- 253 (754)
T PRK15370 185 LKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPA-TL--PDTIQEMELSINRI- 253 (754)
T ss_pred eCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCCh-hh--hccccEEECcCCcc-
Confidence 4566666 3454442 57899999999988 5665543 58999999999886 3332 22 24789999988864
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI 161 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 161 (279)
..++... ..+|+.|++++|.+..+|..+. ++|+.|++++|.+... +..+ ...|+.|++++|-...+
T Consensus 254 ~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L-------P~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 254 TELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL-------PAHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred CcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccC-------cccc--hhhHHHHHhcCCccccC
Confidence 3444332 2478999999999888886553 5799999999987632 2222 24688888887732222
Q ss_pred c--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEE
Q 044855 162 G--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVL 232 (279)
Q Consensus 162 ~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 232 (279)
. ..++|+.|++++|.++. +|..+ .++|+.|++++|.+.. +|+.|++++|.+.. +|..+. ..|+.|
T Consensus 320 P~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-LP~~l~--~sL~~L 393 (754)
T PRK15370 320 PETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-LPENLP--AALQIM 393 (754)
T ss_pred CccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-CCHhHH--HHHHHH
Confidence 1 23689999999998877 55444 3689999999887652 78899999998864 555443 368889
Q ss_pred EccCCcccccCChhhh----cccCCcEEEccCCEee
Q 044855 233 LLRGNSLQGHIPNELC----QLAKLRIMDLSNNIFS 264 (279)
Q Consensus 233 ~l~~n~~~~~~~~~~~----~~~~L~~L~l~~n~l~ 264 (279)
++++|++. .+|..+. ..+.+..|++.+|+++
T Consensus 394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 99999987 5555443 3477888999999875
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=9.6e-18 Score=138.33 Aligned_cols=242 Identities=22% Similarity=0.204 Sum_probs=171.0
Q ss_pred EEEeeCCccc-ccCCccccCCCcCcEEeccCcccCccc---chhhhcccccceeeeecCCcccc-----cccCCCCCCCC
Q 044855 23 VLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTF---SINSLANHSKLEVLLLSSGSNML-----QVKTESWHPTS 93 (279)
Q Consensus 23 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~ 93 (279)
.|+|..+.++ ......|..+++|+.++++++.+.+.. ....+...+.+++++++++.... ......+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665 344455677888999999999886321 12345667789999998775431 11123456688
Q ss_pred ceeEEEecCCcCc-ccChhhhcC---CCccEEEeeCCcccccCCCCCcCcchhhcc-CcccceeccCCCCc---------
Q 044855 94 QLKVLKLSDCQLH-VIPSFLLQQ---DHLKFLDLSHNKLVGNFPICGKMDDGLRSS-TSLEGLDISGNIPN--------- 159 (279)
Q Consensus 94 ~L~~L~l~~~~~~-~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~--------- 159 (279)
+|+.|++++|.+. ..+..+..+ ++|++|++++|.+.+... ..+...+..+ ++|+.++++++-..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 9999999999885 334444444 449999999998753211 1233445566 89999999988322
Q ss_pred cccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCCCch
Q 044855 160 WIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGRIPY 221 (279)
Q Consensus 160 ~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~~~~ 221 (279)
.+..+++|++|++++|.+++. .+..+...++|+.|++++|.+.+ +|++|++++|.+.+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 345667899999999988742 33345667899999999998753 699999999998764333
Q ss_pred hhh-c----CcCCcEEEccCCccccc----CChhhhcccCCcEEEccCCEeeee
Q 044855 222 QIN-E----LSNLHVLLLRGNSLQGH----IPNELCQLAKLRIMDLSNNIFSGS 266 (279)
Q Consensus 222 ~~~-~----~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 266 (279)
.+. . .+.|++|++++|.+++. ....+..+++|+.+++++|.++..
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 332 2 37899999999998733 344556678999999999999844
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=8e-16 Score=137.59 Aligned_cols=223 Identities=24% Similarity=0.315 Sum_probs=165.4
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
.+.+.|++.+++++ .+|..+ .++|+.|++++|.+. ..+... ..+|+.|++++|.. ..++.. ...+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~L-tsLP~~---l~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENL---QGNIKTLYANSNQL-TSIPAT---LPDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCcc-ccCChh---hhccccEE
Confidence 45788999999988 567655 358999999999987 444322 25899999998863 344432 12479999
Q ss_pred EecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcccc--CCCCCcEEEccccE
Q 044855 99 KLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIG--NISTLRVLLMSKNY 176 (279)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~L~~L~l~~~~ 176 (279)
++++|.+..+|..+. .+|+.|++++|.+.. ++..+ ..+|+.|++++|-...+. ..++|+.|++++|.
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~-------LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHNKISC-------LPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCCccCc-------ccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence 999999999987654 579999999998863 22222 247999999988332221 12478999999999
Q ss_pred eeeeccccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhc
Q 044855 177 LEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQ 249 (279)
Q Consensus 177 l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 249 (279)
++. +|..+ .++|+.|++++|.+.. +|+.|++++|++. .+|..+. ++|+.|++++|.++ .+|..+.
T Consensus 316 Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 316 LTA-LPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred ccc-CCccc--cccceeccccCCccccCChhhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence 886 45433 3689999999987653 8999999999986 4565443 68999999999998 5565554
Q ss_pred ccCCcEEEccCCEeeeecCccccC
Q 044855 250 LAKLRIMDLSNNIFSGSIPSCLGN 273 (279)
Q Consensus 250 ~~~L~~L~l~~n~l~~~~p~~~~~ 273 (279)
+.|+.|++++|.++ .+|+.+.+
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~ 409 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPH 409 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHH
Confidence 36899999999998 77765443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=3.4e-15 Score=133.07 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=143.2
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
..-..|+++++.++ .+|..+. ++|+.|++.+|.++ .++. ..++|++|++++|.. ..++. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~L-tsLP~----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQL-TSLPV----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCcc-CcccC----ccccccee
Confidence 44678999999998 6787664 48999999999887 3331 357899999998864 34442 24689999
Q ss_pred EecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccC-CC------------
Q 044855 99 KLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGN-IS------------ 165 (279)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~------------ 165 (279)
++.+|.+..+|.. ..+|+.|++++|.+... +. .+++|+.|++++|-...+.. ..
T Consensus 268 ~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~L-------P~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLTHLPAL---PSGLCKLWIFGNQLTSL-------PV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchhhhhhc---hhhcCEEECcCCccccc-------cc---cccccceeECCCCccccCCCCcccccccccccCcc
Confidence 9999999887753 36788999999987632 21 23567888887762222211 12
Q ss_pred --------CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855 166 --------TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQINELSNLHV 231 (279)
Q Consensus 166 --------~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 231 (279)
+|+.|++++|.++. +|.. .++|+.|++++|.+.. +|+.|++++|++.+ +|.. .++|+.
T Consensus 335 ~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~ 406 (788)
T PRK15387 335 TSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKE 406 (788)
T ss_pred ccccccccccceEecCCCccCC-CCCC---CcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCE
Confidence 34555555555444 2221 1344445555554432 56666776666643 3322 246777
Q ss_pred EEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
|++++|.++ .+|.. ..+|+.|++++|.++ .+|+.++.++.|+
T Consensus 407 LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 407 LMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred EEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence 777777776 34432 235777888888887 7888888777664
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=5.2e-18 Score=148.27 Aligned_cols=230 Identities=27% Similarity=0.329 Sum_probs=127.4
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
.+|++++++.+.++ .+|..+..+.+|+.++...|.+. .. +..+...+.|+.|.+..|.. ..++. ...+...|++|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~l-p~ri~~~~~L~~l~~~~nel-~yip~-~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-AL-PLRISRITSLVSLSAAYNEL-EYIPP-FLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hh-HHHHhhhhhHHHHHhhhhhh-hhCCC-cccccceeeee
Confidence 45677777777776 45566677777777777777663 22 23444556666666655542 22222 23456667777
Q ss_pred EecCCcCcccChhhhcC--CCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCCCCcEEE
Q 044855 99 KLSDCQLHVIPSFLLQQ--DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLL 171 (279)
Q Consensus 99 ~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~ 171 (279)
++..|.+..+|..+..- ..++.++.+.+.+.... ...=..++.|+.|.+.+| +...+.+..+|+.|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccc------cccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 77777776666533221 12444444444433111 011122334555555444 233445556666666
Q ss_pred ccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccccc
Q 044855 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGH 242 (279)
Q Consensus 172 l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 242 (279)
++.|++.......+.++..|+.|++++|.++. .|++|...+|.+. .+| .+..++.|+.+|++.|+++..
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 66666655344455666666666666666543 5556666666653 345 566677777777777776633
Q ss_pred C-ChhhhcccCCcEEEccCCE
Q 044855 243 I-PNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 243 ~-~~~~~~~~~L~~L~l~~n~ 262 (279)
. +... ..|+|++||++||.
T Consensus 468 ~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 468 TLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhC-CCcccceeeccCCc
Confidence 2 2222 22677777777776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.3e-17 Score=117.68 Aligned_cols=166 Identities=27% Similarity=0.438 Sum_probs=113.1
Q ss_pred cccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855 65 ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS 144 (279)
Q Consensus 65 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 144 (279)
..+..+..|.++++.. ..+++ .+..+.+|+.|++.+|.++++|..++++++|+.|+++-|++.
T Consensus 30 f~~s~ITrLtLSHNKl-~~vpp-nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--------------- 92 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKL-TVVPP-NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--------------- 92 (264)
T ss_pred cchhhhhhhhcccCce-eecCC-cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---------------
Confidence 3344444455555542 22222 245667777777777878888888888888888877766654
Q ss_pred cCcccceeccCCCCccccCCCCCcEEEccccEeee-eccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhh
Q 044855 145 STSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEA-NIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQI 223 (279)
Q Consensus 145 ~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 223 (279)
.+|..|++++.|+.|++..|.+.+ ..|..|..+..|+-|.+++|.+ +.+|...
T Consensus 93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf---------------e~lp~dv 146 (264)
T KOG0617|consen 93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF---------------EILPPDV 146 (264)
T ss_pred -----------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc---------------ccCChhh
Confidence 356777888888888888877654 3555666666666555554443 3567777
Q ss_pred hcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCc
Q 044855 224 NELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275 (279)
Q Consensus 224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 275 (279)
+++.+|+.|.++.|.+- ..|..++.+..|++|.+.+|+++ .+|..++.+.
T Consensus 147 g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 78888888888888876 67777888888888888888888 7776666553
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-17 Score=118.13 Aligned_cols=159 Identities=24% Similarity=0.403 Sum_probs=120.2
Q ss_pred cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855 16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL 95 (279)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 95 (279)
-++.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. .. +..+..+++|++|+++.+. ..+.++.|+.+|.|
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~l-p~~issl~klr~lnvgmnr--l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-EL-PTSISSLPKLRILNVGMNR--LNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hc-Chhhhhchhhhheecchhh--hhcCccccCCCchh
Confidence 34666777888888888 56666778888888888888775 22 3567778888888876553 24456678888888
Q ss_pred eEEEecCCcC--cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcE
Q 044855 96 KVLKLSDCQL--HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRV 169 (279)
Q Consensus 96 ~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~ 169 (279)
+.|++.+|.+ ..+|..++.+..|+.|++++|++. .++..+.++++|+.+.+.++ +|..++.+..|+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 8888888877 577888888888888888888876 66677777888888877766 6778888888899
Q ss_pred EEccccEeeeeccccccC
Q 044855 170 LLMSKNYLEANIPVQLNH 187 (279)
Q Consensus 170 L~l~~~~l~~~~~~~l~~ 187 (279)
|.+.+|.++- .|+.+++
T Consensus 178 lhiqgnrl~v-lppel~~ 194 (264)
T KOG0617|consen 178 LHIQGNRLTV-LPPELAN 194 (264)
T ss_pred Hhcccceeee-cChhhhh
Confidence 9999888877 5544443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=2.8e-13 Score=107.03 Aligned_cols=234 Identities=21% Similarity=0.255 Sum_probs=126.4
Q ss_pred cccCCCCccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCcc----cc------hhhhcccccceeeeecCCc
Q 044855 14 CLNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQGT----FS------INSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~------~~~~~~~~~L~~L~l~~~~ 79 (279)
.+..+..++.|++++|.|.. .+...+.+.+.|+..++++- +++. ++ ...+..+++|+++++|.|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34556777888888887652 23334555667777766643 1111 11 1234556677777777665
Q ss_pred ccccccC---CCCCCCCceeEEEecCCcCcccCh--------------hhhcCCCccEEEeeCCcccccCCCCCcCcchh
Q 044855 80 NMLQVKT---ESWHPTSQLKVLKLSDCQLHVIPS--------------FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGL 142 (279)
Q Consensus 80 ~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 142 (279)
.....+. ..+..+.+|++|.+.+|++..... ...+-++|+.+..++|++.+... ..+...+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga--~~~A~~~ 181 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA--TALAEAF 181 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH--HHHHHHH
Confidence 4333221 123456677777777776632221 11233567777777666543222 2333444
Q ss_pred hccCcccceeccCCC---------CccccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcccceEEE
Q 044855 143 RSSTSLEGLDISGNI---------PNWIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSSKLITLD 209 (279)
Q Consensus 143 ~~~~~L~~l~l~~~~---------~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~~L~~L~ 209 (279)
...+.|+.+++..+. ...+..+++|++|++.+|.++.. +...+..++. |+.|+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~--------------L~El~ 247 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH--------------LRELN 247 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch--------------heeec
Confidence 444555555554331 11233445555555555544321 2223334444 55555
Q ss_pred eecCccCCCCchhh-----hcCcCCcEEEccCCcccccC----ChhhhcccCCcEEEccCCEee
Q 044855 210 LRDNKFFGRIPYQI-----NELSNLHVLLLRGNSLQGHI----PNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 210 l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~ 264 (279)
+++|-+......++ ...|.|+.+.+.+|.|+... ...+...|.|+.|++++|.+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 55555544443333 34788999999999987542 233445788999999999984
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-12 Score=104.36 Aligned_cols=179 Identities=24% Similarity=0.271 Sum_probs=116.9
Q ss_pred cCCCCccEEEeeCCcccccCC--ccccCCCcCcEEeccCcccCcccch-hhhcccccceeeeecCCcccccccCCCCCCC
Q 044855 16 NHLTHLKVLDIFNNQLSGNFP--STLTNFTSLEYLDLSSINFQGTFSI-NSLANHSKLEVLLLSSGSNMLQVKTESWHPT 92 (279)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (279)
+++.+|+.+.|.++.+. ..+ .....+++++.|++++|-+..+.+. .....+++|+.|+++.|....-.....-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45788999999988776 232 3456799999999999977644443 3457889999999988764332222223457
Q ss_pred CceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----C--ccccCC
Q 044855 93 SQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI----P--NWIGNI 164 (279)
Q Consensus 93 ~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~--~~~~~~ 164 (279)
+.|+.|.++.|++. .+...+..+|+++.|++..|.... .......-+..|++|+++++. + ...+.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc------eecchhhhhhHHhhccccCCcccccccccccccc
Confidence 78999999999884 444456678999999999884210 222334446667788887762 1 234567
Q ss_pred CCCcEEEccccEeeeec-ccc-----ccCCCCccEEeccCCcC
Q 044855 165 STLRVLLMSKNYLEANI-PVQ-----LNHLKSLELIDIFENSL 201 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~-~~~-----l~~~~~L~~l~l~~~~~ 201 (279)
+.|+.|.++.+++.+.. |.. ...+++|++|++..|.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 77788888777766521 211 23445555555555554
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=3.3e-12 Score=99.48 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=17.4
Q ss_pred ceeEEEecCCcCcccChhhhcCCCccEEEeeCCcc
Q 044855 94 QLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKL 128 (279)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 128 (279)
.|+++++++|.+..+..++.-.|+++.|+++.|.+
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i 319 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI 319 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccce
Confidence 34445555555544444444445555555555444
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2.6e-11 Score=89.63 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEE
Q 044855 91 PTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVL 170 (279)
Q Consensus 91 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L 170 (279)
+...+++|++.++.++.+..--..+.+|+.|++++|.+.. .+.+..++.|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~---------------------------l~~l~~L~~L~~L 69 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK---------------------------LEGLPGLPRLKTL 69 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S-----------------------------TT----TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc---------------------------ccCccChhhhhhc
Confidence 3445677777777776664322246677777777776652 1234456778888
Q ss_pred EccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC---Chhh
Q 044855 171 LMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI---PNEL 247 (279)
Q Consensus 171 ~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~ 247 (279)
++++|.++...+.....+|+|+.|++++|.+.+ .+. ...+..+++|+.|++.+|+++... ...+
T Consensus 70 ~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~------------l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi 136 (175)
T PF14580_consen 70 DLSNNRISSISEGLDKNLPNLQELYLSNNKISD------------LNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVI 136 (175)
T ss_dssp E--SS---S-CHHHHHH-TT--EEE-TTS---S------------CCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHH
T ss_pred ccCCCCCCccccchHHhCCcCCEEECcCCcCCC------------hHH-hHHHHcCCCcceeeccCCcccchhhHHHHHH
Confidence 888888876322222356777766666665542 011 234567888888888888887431 2245
Q ss_pred hcccCCcEEEc
Q 044855 248 CQLAKLRIMDL 258 (279)
Q Consensus 248 ~~~~~L~~L~l 258 (279)
..+|+|+.||-
T Consensus 137 ~~lP~Lk~LD~ 147 (175)
T PF14580_consen 137 YKLPSLKVLDG 147 (175)
T ss_dssp HH-TT-SEETT
T ss_pred HHcChhheeCC
Confidence 56788887753
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=2e-12 Score=102.36 Aligned_cols=200 Identities=22% Similarity=0.278 Sum_probs=136.9
Q ss_pred CCCCCcCcCC----CCccccCCCCccEEEeeCCc---ccccCC-------ccccCCCcCcEEeccCcccCcccch---hh
Q 044855 1 DLSSNNFEGH----LPQCLNHLTHLKVLDIFNNQ---LSGNFP-------STLTNFTSLEYLDLSSINFQGTFSI---NS 63 (279)
Q Consensus 1 ~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~---~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~---~~ 63 (279)
|||+|.+... +...+++.++|+..++++-. ....+| +++.++|+|++++||+|.+...... ..
T Consensus 36 ~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~l 115 (382)
T KOG1909|consen 36 DLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEEL 115 (382)
T ss_pred eccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHH
Confidence 4666666632 33455677888888887632 222333 3456788999999999988633221 23
Q ss_pred hcccccceeeeecCCcccccc------------cCCCCCCCCceeEEEecCCcCc-----ccChhhhcCCCccEEEeeCC
Q 044855 64 LANHSKLEVLLLSSGSNMLQV------------KTESWHPTSQLKVLKLSDCQLH-----VIPSFLLQQDHLKFLDLSHN 126 (279)
Q Consensus 64 ~~~~~~L~~L~l~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~ 126 (279)
+..+..|++|.+.+|...... ..+....-+.|+++....|.+. .++..+...+.|+.+.+..|
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN 195 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN 195 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc
Confidence 567899999999888642211 1223456679999999999884 34556778899999999999
Q ss_pred cccccCCCCCcCcchhhccCcccceeccCC---------CCccccCCCCCcEEEccccEeeeeccccc-----cCCCCcc
Q 044855 127 KLVGNFPICGKMDDGLRSSTSLEGLDISGN---------IPNWIGNISTLRVLLMSKNYLEANIPVQL-----NHLKSLE 192 (279)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---------~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~ 192 (279)
.+....- ..+...+..+++|+.||+.+| +...+..+++|+.+++.+|.+.......+ ...|+|+
T Consensus 196 ~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 196 GIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE 273 (382)
T ss_pred cccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence 8753332 245667899999999999988 34556778999999999998876333222 2356667
Q ss_pred EEeccCCcCc
Q 044855 193 LIDIFENSLS 202 (279)
Q Consensus 193 ~l~l~~~~~~ 202 (279)
.+.+.+|.++
T Consensus 274 vl~l~gNeIt 283 (382)
T KOG1909|consen 274 VLELAGNEIT 283 (382)
T ss_pred eeccCcchhH
Confidence 6666666554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=2.7e-12 Score=107.73 Aligned_cols=186 Identities=31% Similarity=0.442 Sum_probs=116.3
Q ss_pred EEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCC
Q 044855 47 YLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHN 126 (279)
Q Consensus 47 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 126 (279)
..+++.|.+. .+ +..+..+..|+.+.++.|.+ ...+..+..+..|+.++++.|.+..+|..++.++ |+.|-+++|
T Consensus 79 ~aDlsrNR~~-el-p~~~~~f~~Le~liLy~n~~--r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-EL-PEEACAFVSLESLILYHNCI--RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cC-chHHHHHHHHHHHHHHhccc--eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 3455555543 11 13344444555555544421 2223345666677777777777777777777766 677777777
Q ss_pred cccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855 127 KLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS 202 (279)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 202 (279)
++. .+++.+.....|..++.+.| ++..++.+.+|+.|.+.+|.+.. +|..+..+
T Consensus 154 kl~-------~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-------------- 211 (722)
T KOG0532|consen 154 KLT-------SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-------------- 211 (722)
T ss_pred ccc-------cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC--------------
Confidence 765 33444444455555555544 45556666666777776666655 44444433
Q ss_pred ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC---CcEEEccCCE
Q 044855 203 SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK---LRIMDLSNNI 262 (279)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~---L~~L~l~~n~ 262 (279)
.|..||+++|++. .+|..|+.|..|+.|-|.+|+++ ..|..++-... .++|++.-|.
T Consensus 212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 4556777777763 58889999999999999999998 66666665433 4677887774
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=3.1e-11 Score=94.13 Aligned_cols=120 Identities=28% Similarity=0.340 Sum_probs=96.9
Q ss_pred hhhccCcccceeccCCCC----ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceE
Q 044855 141 GLRSSTSLEGLDISGNIP----NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLIT 207 (279)
Q Consensus 141 ~~~~~~~L~~l~l~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~ 207 (279)
.+.....|+++|+++|.+ +.+.-.|.++.|+++.|.+... ..++.+++|..|++++|.+.+ ++++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 444566788999998844 3445679999999999998763 348899999999999998875 8999
Q ss_pred EEeecCccCCCCchhhhcCcCCcEEEccCCccccc-CChhhhcccCCcEEEccCCEee
Q 044855 208 LDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGH-IPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 208 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
|.++.|.+.+ ...+..+-+|..||+++|+|... -...++++|.|+.+.+.+|++.
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999998842 23466778899999999998743 3557889999999999999998
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.6e-12 Score=101.53 Aligned_cols=155 Identities=21% Similarity=0.087 Sum_probs=63.7
Q ss_pred CCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc-ccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCc
Q 044855 42 FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHL 118 (279)
Q Consensus 42 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L 118 (279)
+.+|+.+.+.++.+...........|++++.|+++.|-.... ........+|+|+.|+++.|.+..... ....++.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 455555555555443222123344555555555555432211 112223445555555555554422211 11133445
Q ss_pred cEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---Ccc--ccCCCCCcEEEccccEeee-eccccccCCCCcc
Q 044855 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---PNW--IGNISTLRVLLMSKNYLEA-NIPVQLNHLKSLE 192 (279)
Q Consensus 119 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~--~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~ 192 (279)
+.|.++.|.++. ......+..+++++.|++.+|- ... ...+..|+.|++++|.+.. ......+.+|.|+
T Consensus 200 K~L~l~~CGls~-----k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 200 KQLVLNSCGLSW-----KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred heEEeccCCCCH-----HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 555555554431 1222333444555555554441 111 1223445555555554433 1112234444444
Q ss_pred EEeccCCcC
Q 044855 193 LIDIFENSL 201 (279)
Q Consensus 193 ~l~l~~~~~ 201 (279)
.|+++.+.+
T Consensus 275 ~Lnls~tgi 283 (505)
T KOG3207|consen 275 QLNLSSTGI 283 (505)
T ss_pred hhhccccCc
Confidence 444444443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=4.2e-12 Score=106.56 Aligned_cols=168 Identities=25% Similarity=0.388 Sum_probs=135.0
Q ss_pred CCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCC
Q 044855 92 TSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTL 167 (279)
Q Consensus 92 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L 167 (279)
+..-...+++.|.+..+|..+..+..|+.+.+..|.+. .++..+..+..|.+++++.+ +|..+..++ |
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-------TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-L 145 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-------ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-c
Confidence 44455568888889999988888888998888888876 66778888889999998876 566666666 8
Q ss_pred cEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238 (279)
Q Consensus 168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 238 (279)
+.|.+++|.++. .|..++..+.|..++.+.|.+.. +|+.|.+..|... .+|..+..+ .|..||+++|+
T Consensus 146 kvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 146 KVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred eeEEEecCcccc-CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence 999999999887 77778888899999999998765 7778888888774 466666644 48899999999
Q ss_pred ccccCChhhhcccCCcEEEccCCEeeeecCcccc
Q 044855 239 LQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272 (279)
Q Consensus 239 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 272 (279)
+. .+|..|..|+.|++|-|.+|+++ +=|..+|
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 98 88889999999999999999987 4444433
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.4e-10 Score=85.71 Aligned_cols=131 Identities=24% Similarity=0.219 Sum_probs=53.4
Q ss_pred ccCCCCccEEEeeCCcccccCCcccc-CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855 15 LNHLTHLKVLDIFNNQLSGNFPSTLT-NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS 93 (279)
Q Consensus 15 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (279)
+.+..++++|+|.++.++ .+. .+. .+.+|+.|++++|.+.. + ..+..++.|+.|++++|... .+.......++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-T
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c--cCccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 345567899999999988 333 344 57899999999998873 2 35777899999999888643 33211124588
Q ss_pred ceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceecc
Q 044855 94 QLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS 154 (279)
Q Consensus 94 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 154 (279)
+|++|.+++|.+..+.. .+..+++|+.|++.+|++.... ..-...+..+++|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST---THHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh---hHHHHHHHHcChhheeCCE
Confidence 99999999999866643 5667899999999999987443 2445567888999999865
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.4e-10 Score=97.16 Aligned_cols=193 Identities=33% Similarity=0.410 Sum_probs=102.8
Q ss_pred EEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhccc-ccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855 23 VLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANH-SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS 101 (279)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 101 (279)
.+.+..+.+. .....+...+.++.|++..+.+.. ++ ...... .+|+.|+++.+.. ..++ ..++.+++|+.|++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~-i~-~~~~~~~~nL~~L~l~~N~i-~~l~-~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITD-IP-PLIGLLKSNLKELDLSDNKI-ESLP-SPLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCccccc-Cc-cccccchhhcccccccccch-hhhh-hhhhccccccccccC
Confidence 4666666653 222334556778888888887762 22 223333 2677777766653 2221 234667778888888
Q ss_pred CCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEe
Q 044855 102 DCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYL 177 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l 177 (279)
+|.+..++......+.|+.|++++|.+. .++........|+++.++++ .+..+..+..+..+.+..+.+
T Consensus 172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i~-------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 172 FNDLSDLPKLLSNLSNLNNLDLSGNKIS-------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred CchhhhhhhhhhhhhhhhheeccCCccc-------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 8877777776656777777888877765 22233333444555555544 123334444555555555544
Q ss_pred eeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855 178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 244 (279)
Q Consensus 178 ~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 244 (279)
.. .+..++.+++++.+++++|.+. . ++. +....+++.++++++.+....+
T Consensus 245 ~~-~~~~~~~l~~l~~L~~s~n~i~--------------~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 245 ED-LPESIGNLSNLETLDLSNNQIS--------------S-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-ccchhccccccceecccccccc--------------c-ccc-ccccCccCEEeccCccccccch
Confidence 43 2333444444443333333222 1 111 4445556666666665553333
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=5.9e-10 Score=67.97 Aligned_cols=60 Identities=38% Similarity=0.525 Sum_probs=50.0
Q ss_pred cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEe
Q 044855 204 KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIF 263 (279)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 263 (279)
+|+.|++++|++....+..|..+++|+.|++++|.++...+..|.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466777777877666667888899999999999999877888889999999999999875
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=2.6e-09 Score=95.42 Aligned_cols=92 Identities=37% Similarity=0.590 Sum_probs=52.0
Q ss_pred CcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChh
Q 044855 167 LRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNE 246 (279)
Q Consensus 167 L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 246 (279)
++.|+++++.+.+..|..+..+++|+.|++++|. +.+.+|..+..+++|+.|++++|.+++.+|..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--------------l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS--------------IRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc--------------ccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence 5566666666666566666666666655555554 44445555555555555555555555555555
Q ss_pred hhcccCCcEEEccCCEeeeecCcccc
Q 044855 247 LCQLAKLRIMDLSNNIFSGSIPSCLG 272 (279)
Q Consensus 247 ~~~~~~L~~L~l~~n~l~~~~p~~~~ 272 (279)
+..+++|+.|++++|.++|.+|..+.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHh
Confidence 55555555555555555555554443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=3.8e-09 Score=64.37 Aligned_cols=59 Identities=34% Similarity=0.489 Sum_probs=40.5
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCC
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 78 (279)
|+|++|++++|+++...+..|.++++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCC
Confidence 56777888888777555567777888888888877775 444455666666666666555
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.8e-09 Score=98.86 Aligned_cols=148 Identities=21% Similarity=0.202 Sum_probs=106.2
Q ss_pred CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCccc-CcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855 17 HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINF-QGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL 95 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 95 (279)
+....+...+.++.+. ..+... .+++|++|-+.++.. ....+...+..++.|++|++++|......| ..++.+.+|
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhh
Confidence 4456778888888776 444433 456899998888862 235556678889999999999877555555 457889999
Q ss_pred eEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-------CccccCCCCCc
Q 044855 96 KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-------PNWIGNISTLR 168 (279)
Q Consensus 96 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~~~~~~~L~ 168 (279)
++|+++++.+..+|.++..+.+|.+|++..+.... ..+.....+.+|+++.+.... ...+..+.+|+
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~------~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE------SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccc------cccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99999999999999999999999999999876542 224566668888888876442 22234445555
Q ss_pred EEEcc
Q 044855 169 VLLMS 173 (279)
Q Consensus 169 ~L~l~ 173 (279)
.+...
T Consensus 672 ~ls~~ 676 (889)
T KOG4658|consen 672 NLSIT 676 (889)
T ss_pred hheee
Confidence 55543
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.4e-09 Score=83.63 Aligned_cols=211 Identities=19% Similarity=0.145 Sum_probs=126.6
Q ss_pred CccccCCCCccEEEeeCCcccccC-Cccc-cCCCcCcEEeccCcccCcccch-hhhcccccceeeeecCCcccccccCCC
Q 044855 12 PQCLNHLTHLKVLDIFNNQLSGNF-PSTL-TNFTSLEYLDLSSINFQGTFSI-NSLANHSKLEVLLLSSGSNMLQVKTES 88 (279)
Q Consensus 12 ~~~~~~l~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 88 (279)
+-.++...-++.+.+.++.+.... ...| ..+..++.+++.+|.++++... ..+.+++.|++|+++.|.....+....
T Consensus 38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 333444455566666666654211 1122 3578999999999999866543 456899999999999887644443221
Q ss_pred CCCCCceeEEEecCCcC--cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhh-ccCcccceeccCCCC-------
Q 044855 89 WHPTSQLKVLKLSDCQL--HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLR-SSTSLEGLDISGNIP------- 158 (279)
Q Consensus 89 ~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~------- 158 (279)
....+|+++-+.+.++ ......+..+|++++|+++.|......- -.+... -.+.++++++.+|..
T Consensus 118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~----Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNL----DDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcc----ccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 4567999999999877 5566677889999999999985432111 011111 123566666666621
Q ss_pred ccccCCCCCcEEEccccEeeeec-cccccCCCCccEEeccCCcCcccceEEEeecCccCCC-CchhhhcCcCCcEEEccC
Q 044855 159 NWIGNISTLRVLLMSKNYLEANI-PVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRG 236 (279)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~ 236 (279)
....-.|++..+.+..|.++... ...+..+|.+.-|+++.+++.+ . ..+++..++.|.-|.+++
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids--------------wasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS--------------WASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccccc--------------HHHHHHHcCCchhheeeccC
Confidence 11233577888888888765422 2234445555555555554432 1 122344555666666666
Q ss_pred Ccccc
Q 044855 237 NSLQG 241 (279)
Q Consensus 237 n~~~~ 241 (279)
+++.+
T Consensus 259 ~Pl~d 263 (418)
T KOG2982|consen 259 NPLSD 263 (418)
T ss_pred Ccccc
Confidence 65543
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=1e-08 Score=91.61 Aligned_cols=107 Identities=26% Similarity=0.333 Sum_probs=82.9
Q ss_pred CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855 20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK 99 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 99 (279)
.++.|+|+++.+.+.+|..+..+++|++|++++|.+.+.++ ..+..++.|+.|++++|.....++ ..+..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEE
Confidence 37788888888888888888889999999999988875544 567888889999998886544443 4577888999999
Q ss_pred ecCCcC-cccChhhhcC-CCccEEEeeCCcc
Q 044855 100 LSDCQL-HVIPSFLLQQ-DHLKFLDLSHNKL 128 (279)
Q Consensus 100 l~~~~~-~~~~~~~~~~-~~L~~L~l~~~~~ 128 (279)
+++|.+ ..+|..+... .++..+++.+|..
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999888 4777766553 4567788887754
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=7.2e-09 Score=88.13 Aligned_cols=169 Identities=34% Similarity=0.487 Sum_probs=133.7
Q ss_pred CCCCceeEEEecCCcCcccChhhhcCC-CccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCC
Q 044855 90 HPTSQLKVLKLSDCQLHVIPSFLLQQD-HLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNI 164 (279)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~ 164 (279)
...+.++.+.+.++.+..++....... +|+.|++++|.+. .++..+..+++|+.|+++++ ++...+..
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-------SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchh-------hhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 445789999999999999998877774 9999999999886 33357888999999999988 33333478
Q ss_pred CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLR 235 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (279)
+.|+.|++++|.+.. .|........|+.+.+++|.... ++..+.+.+|++.. .+..+..+++++.|+++
T Consensus 186 ~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 186 SNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceeccc
Confidence 899999999999988 55555566679999999994222 66677777777643 25566778889999999
Q ss_pred CCcccccCChhhhcccCCcEEEccCCEeeeecCc
Q 044855 236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS 269 (279)
Q Consensus 236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 269 (279)
+|.++.... +....+++.|++++|.++...|.
T Consensus 264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 264 NNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccccc--ccccCccCEEeccCccccccchh
Confidence 999985444 78889999999999999866554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=3.1e-09 Score=97.37 Aligned_cols=88 Identities=27% Similarity=0.394 Sum_probs=48.8
Q ss_pred ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855 13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT 92 (279)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (279)
..|..+|.|+.|++++|.-.+.+|..+..+-+||+|+++++.+. .. +..+.++..|.+|++..+.....+ +.....+
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~L-P~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L 641 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HL-PSGLGNLKKLIYLNLEVTGRLESI-PGILLEL 641 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-cc-chHHHHHHhhheeccccccccccc-cchhhhc
Confidence 34556666666666655444456666666666666666666554 22 245566666666666554432222 3333446
Q ss_pred CceeEEEecCC
Q 044855 93 SQLKVLKLSDC 103 (279)
Q Consensus 93 ~~L~~L~l~~~ 103 (279)
.+|++|.+...
T Consensus 642 ~~Lr~L~l~~s 652 (889)
T KOG4658|consen 642 QSLRVLRLPRS 652 (889)
T ss_pred ccccEEEeecc
Confidence 66666665544
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.2e-10 Score=90.64 Aligned_cols=174 Identities=22% Similarity=0.166 Sum_probs=105.6
Q ss_pred CcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCC-cCccc--ChhhhcCCCcc
Q 044855 43 TSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDC-QLHVI--PSFLLQQDHLK 119 (279)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~L~ 119 (279)
..|++++++...++.......+..|.+|+.|.+.+......+.. .+....+|+.++++.| ++++. ...+.+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35788888887777555556677888888888877654433332 3455677888888876 44433 34566788888
Q ss_pred EEEeeCCcccccCCCCCcCcchhhc-cCcccceeccCCCC--------ccccCCCCCcEEEccccE-eeeeccccccCCC
Q 044855 120 FLDLSHNKLVGNFPICGKMDDGLRS-STSLEGLDISGNIP--------NWIGNISTLRVLLMSKNY-LEANIPVQLNHLK 189 (279)
Q Consensus 120 ~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~--------~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~ 189 (279)
+|++++|...... ....+.+ -.++..|+++|+.. .....+++|..||+++|. ++......+.+++
T Consensus 264 ~LNlsWc~l~~~~-----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 264 ELNLSWCFLFTEK-----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hcCchHhhccchh-----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 8888887654221 1111111 24566777776521 123457788888888775 3333344566677
Q ss_pred CccEEeccCCcCcccceEEEeecCccCCCCchh---hhcCcCCcEEEccCCc
Q 044855 190 SLELIDIFENSLSSKLITLDLRDNKFFGRIPYQ---INELSNLHVLLLRGNS 238 (279)
Q Consensus 190 ~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~ 238 (279)
.|+++.++.|.. ..|.. +..+|+|++|++.++-
T Consensus 339 ~L~~lSlsRCY~----------------i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYD----------------IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcC----------------CChHHeeeeccCcceEEEEecccc
Confidence 777666666642 22322 3456677777776654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.9e-11 Score=92.39 Aligned_cols=174 Identities=25% Similarity=0.293 Sum_probs=108.3
Q ss_pred CccEEEeeCCcccc-cCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCC-CCCCCCceeE
Q 044855 20 HLKVLDIFNNQLSG-NFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTE-SWHPTSQLKV 97 (279)
Q Consensus 20 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~ 97 (279)
.|+.+||++..++. .+-..+..+.+|+.|.+.|+++.+.+. ..+++..+|+.++++.|.-.+..... .+..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 47788888877763 222345667888888888887764433 56677778888888877544333222 3466778888
Q ss_pred EEecCCcC--cccChhhhc-CCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------CCccccCCCCCc
Q 044855 98 LKLSDCQL--HVIPSFLLQ-QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLR 168 (279)
Q Consensus 98 L~l~~~~~--~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------~~~~~~~~~~L~ 168 (279)
|++++|.. +.+...+.. -++|+.|+++++...-.. ..+..-...++++.+||++++ +...+.+++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888866 222222222 367788888876532100 122233456778888888876 234566788899
Q ss_pred EEEccccEeeeeccc---cccCCCCccEEeccCC
Q 044855 169 VLLMSKNYLEANIPV---QLNHLKSLELIDIFEN 199 (279)
Q Consensus 169 ~L~l~~~~l~~~~~~---~l~~~~~L~~l~l~~~ 199 (279)
++.+++|+. .+|. .+...|+|.+|++.++
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 999998864 2232 3455666776665544
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=1.3e-08 Score=86.93 Aligned_cols=173 Identities=27% Similarity=0.327 Sum_probs=108.8
Q ss_pred cccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855 14 CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS 93 (279)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (279)
.+..+++++.+++.+|.+. .+...+..+++|++|++++|.+... ..+..+..|+.|++++|.+.. + ..+..++
T Consensus 90 ~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~-~--~~~~~l~ 162 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISD-I--SGLESLK 162 (414)
T ss_pred ccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc---cchhhccchhhheeccCcchh-c--cCCccch
Confidence 3566788888888888887 3333366788888888888887632 345555668888888776422 2 1234477
Q ss_pred ceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCC---C--CC
Q 044855 94 QLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNI---S--TL 167 (279)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~--~L 167 (279)
+|+.+++++|.+..+... ...+.+++.+++.+|.+... ..+.....+..+++..+....+..+ . +|
T Consensus 163 ~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--------~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L 234 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--------EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHL 234 (414)
T ss_pred hhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--------cchHHHHHHHHhhcccccceeccCcccchhHHH
Confidence 888888888888766653 46678888888888766422 2222333333334444432222222 2 26
Q ss_pred cEEEccccEeeeeccccccCCCCccEEeccCCcCc
Q 044855 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS 202 (279)
Q Consensus 168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 202 (279)
+.++++++++.. .+..+..++.+..+++.++.+.
T Consensus 235 ~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 235 RELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 778888877765 2244556666676777666654
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.58 E-value=4.8e-09 Score=80.93 Aligned_cols=186 Identities=19% Similarity=0.174 Sum_probs=121.1
Q ss_pred ccCCCCccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCc---------ccchhhhcccccceeeeecCCccc
Q 044855 15 LNHLTHLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQG---------TFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 15 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
+..+..++.++|++|.|.. .+...+.+-.+|+..+++.--... ......+.+|++|+..+++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3457888999999998762 233445667888888887642211 112245678899999999988776
Q ss_pred ccccCC---CCCCCCceeEEEecCCcCcccC-----hh---------hhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855 82 LQVKTE---SWHPTSQLKVLKLSDCQLHVIP-----SF---------LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS 144 (279)
Q Consensus 82 ~~~~~~---~~~~~~~L~~L~l~~~~~~~~~-----~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 144 (279)
...+.. .+...+.|.+|.+++|++..++ .. ...-|.|+.+...+|++..... ......+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~--~~~a~~l~s 183 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK--ELSAALLES 183 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH--HHHHHHHHh
Confidence 655443 4467788999999999885443 12 2234789999988888752211 123334555
Q ss_pred cCcccceeccCCC--Ccc--------ccCCCCCcEEEccccEeeeec----cccccCCCCccEEeccCCcCc
Q 044855 145 STSLEGLDISGNI--PNW--------IGNISTLRVLLMSKNYLEANI----PVQLNHLKSLELIDIFENSLS 202 (279)
Q Consensus 145 ~~~L~~l~l~~~~--~~~--------~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~l~l~~~~~~ 202 (279)
...|+.+.+..|. |.. +.-+.+|+.|++.+|.++... ...++.++.|+.|.+.+|.+.
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 5678888877662 221 234578888888888776532 334566777888877777654
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=2e-09 Score=87.52 Aligned_cols=243 Identities=17% Similarity=0.108 Sum_probs=104.4
Q ss_pred cCCCCccEEEeeCCc-ccccCCccc-cCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCcccccccCC-CCCC
Q 044855 16 NHLTHLKVLDIFNNQ-LSGNFPSTL-TNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGSNMLQVKTE-SWHP 91 (279)
Q Consensus 16 ~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 91 (279)
.++|+++.|++.+|. ++......+ ..+++|+++++..|. ++......-...|++|++++++||..+..-..+ .+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 356667777666663 222222222 346667777766653 332222224456677777777776544331111 2234
Q ss_pred CCceeEEEecCCcC---cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--CC----ccc-
Q 044855 92 TSQLKVLKLSDCQL---HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--IP----NWI- 161 (279)
Q Consensus 92 ~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--~~----~~~- 161 (279)
+..++.+...+|.- +.+-..-..+.-+.++++..+...... .....-..+..|+.++.+++ +. ..+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~----~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE----DLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch----HHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 44455554444421 111111112233333333333211100 11112233445555555543 11 111
Q ss_pred cCCCCCcEEEccccE-eeeecccc-ccCCCCccEEeccCCcCcc------------cceEEEeecCc-cCCCCchhh---
Q 044855 162 GNISTLRVLLMSKNY-LEANIPVQ-LNHLKSLELIDIFENSLSS------------KLITLDLRDNK-FFGRIPYQI--- 223 (279)
Q Consensus 162 ~~~~~L~~L~l~~~~-l~~~~~~~-l~~~~~L~~l~l~~~~~~~------------~L~~L~l~~~~-~~~~~~~~~--- 223 (279)
...++|+.+-+.+|. ++...... -.+++.|+.+++.++.... .|+.+.++.|. +++..-..+
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 234556666665554 22111111 1234455555544443221 34444444332 122211111
Q ss_pred -hcCcCCcEEEccCCc-ccccCChhhhcccCCcEEEccCCE
Q 044855 224 -NELSNLHVLLLRGNS-LQGHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 224 -~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
..+..+..+.+++++ +++...+.+..+++|+.+++.+|.
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 234556666666665 344455556666666666666665
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=3.4e-08 Score=84.42 Aligned_cols=164 Identities=35% Similarity=0.439 Sum_probs=89.3
Q ss_pred CCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc---ccCCC
Q 044855 89 WHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW---IGNIS 165 (279)
Q Consensus 89 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~~~ 165 (279)
+..+.+|+.+++.++.++.+...+..+++|+.|++++|.+.+. ..+..++.|+.|++.+|.... +..++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--------~~l~~l~~L~~L~l~~N~i~~~~~~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--------EGLSTLTLLKELNLSGNLISDISGLESLK 162 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc--------cchhhccchhhheeccCcchhccCCccch
Confidence 3455666666666666666655455666667777776666532 233444446666666663332 33356
Q ss_pred CCcEEEccccEeeeecc-ccccCCCCccEEeccCCcCcc--------cceEEEeecCccCCCCchhhhcCc--CCcEEEc
Q 044855 166 TLRVLLMSKNYLEANIP-VQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRIPYQINELS--NLHVLLL 234 (279)
Q Consensus 166 ~L~~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~--------~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l 234 (279)
.|+.+++++|.+....+ . ...+.+++.+.+.+|.+.. .+..+++.+|.+...-+ +..+. +|+.+++
T Consensus 163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYL 239 (414)
T ss_pred hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhc
Confidence 67777777776665333 1 3566666766676666543 33333445554432211 11111 2566666
Q ss_pred cCCcccccCChhhhcccCCcEEEccCCEee
Q 044855 235 RGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 235 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
++|++. ..+..+..++.+..+++.+|.+.
T Consensus 240 ~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 240 SGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccCccc-cccccccccccccccchhhcccc
Confidence 666665 22244445555666666666554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.1e-07 Score=74.44 Aligned_cols=204 Identities=15% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCCcCcEEeccCcccCcccchhhh-cccccceeeeecCCccccc-ccCCCCCCCCceeEEEecCCcCcccChhh-hcCCC
Q 044855 41 NFTSLEYLDLSSINFQGTFSINSL-ANHSKLEVLLLSSGSNMLQ-VKTESWHPTSQLKVLKLSDCQLHVIPSFL-LQQDH 117 (279)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 117 (279)
....++.+.+.++.+...-....+ ..++.++.+++.+|.+... -....+..+|.|++|+++.|.+...-..+ ....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 334444566666655432222222 3456666777766654222 11223456666677776666552211111 23455
Q ss_pred ccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeecc--cccc-CCCCccEE
Q 044855 118 LKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIP--VQLN-HLKSLELI 194 (279)
Q Consensus 118 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~-~~~~L~~l 194 (279)
|+.|-+.+..+... .. ...+..+|.++.|.++.|.+..... .... ..+.++.+
T Consensus 123 l~~lVLNgT~L~w~-----~~-------------------~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tl 178 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWT-----QS-------------------TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTL 178 (418)
T ss_pred eEEEEEcCCCCChh-----hh-------------------hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhh
Confidence 66666666544311 11 2223344555555555553221000 0000 11233333
Q ss_pred eccCCcCc------------ccceEEEeecCccCCC-CchhhhcCcCCcEEEccCCcccc-cCChhhhcccCCcEEEccC
Q 044855 195 DIFENSLS------------SKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRGNSLQG-HIPNELCQLAKLRIMDLSN 260 (279)
Q Consensus 195 ~l~~~~~~------------~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~ 260 (279)
++..|... +++..+-+..|.+... ....+..+|.+..|++..+.|.+ +-.+.+..++.|..|.+.+
T Consensus 179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred hcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 33333211 2666667777766433 23455677888899999999864 3566788899999999999
Q ss_pred CEeeeecC
Q 044855 261 NIFSGSIP 268 (279)
Q Consensus 261 n~l~~~~p 268 (279)
+++.+.+.
T Consensus 259 ~Pl~d~l~ 266 (418)
T KOG2982|consen 259 NPLSDPLR 266 (418)
T ss_pred Cccccccc
Confidence 99875543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=9.3e-09 Score=89.38 Aligned_cols=179 Identities=28% Similarity=0.292 Sum_probs=97.1
Q ss_pred CccccCCCcCcEEeccCcccCcccchhhhccc-ccceeeeecCCcc-cccccCC---CC---CCCCceeEEEecCCcCcc
Q 044855 36 PSTLTNFTSLEYLDLSSINFQGTFSINSLANH-SKLEVLLLSSGSN-MLQVKTE---SW---HPTSQLKVLKLSDCQLHV 107 (279)
Q Consensus 36 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~-~~~~~~~---~~---~~~~~L~~L~l~~~~~~~ 107 (279)
|-.+..+..|++|.+.+|.+.... .+..+ .+|++|...+.-- ...+... .+ -.+-.|.+.+.++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~---GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK---GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh---hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 445678889999999999886321 22222 3556655432210 0000000 01 112356677777888777
Q ss_pred cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccC----CCCCcEEEccccEeeeeccc
Q 044855 108 IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGN----ISTLRVLLMSKNYLEANIPV 183 (279)
Q Consensus 108 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~L~~L~l~~~~l~~~~~~ 183 (279)
+...+.-++.++.|++++|++.+. ..+..+++|++||++.|....+.. -..|..|.+.+|.++.. .
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL--~ 248 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL--R 248 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh--h
Confidence 777888888888888888887621 255566666666666552221111 12366666666655441 2
Q ss_pred cccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855 184 QLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240 (279)
Q Consensus 184 ~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (279)
.+.++++|+.||++.|-+.. ..--.-+..+..|+.|.+.||++.
T Consensus 249 gie~LksL~~LDlsyNll~~-------------hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSE-------------HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHhhhhhhccchhHhhhhc-------------chhhhHHHHHHHHHHHhhcCCccc
Confidence 23444444444444443221 011112344566777777777764
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1e-06 Score=49.36 Aligned_cols=37 Identities=41% Similarity=0.577 Sum_probs=23.4
Q ss_pred cCCcEEEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855 227 SNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
++|++|++++|+++ .++..++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35667777777776 44445667777777777777766
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=2.1e-06 Score=63.70 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=67.6
Q ss_pred CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE
Q 044855 18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV 97 (279)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 97 (279)
..+...+++++|.+. .++ .|..++.|++|.+++|.++ .+.+.--..+++|+.|.+.+|....-.....+..+|.|++
T Consensus 41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 455667777777665 232 3566777777777777776 4444444555677777777665432223334566777777
Q ss_pred EEecCCcCcccC----hhhhcCCCccEEEeeCCcc
Q 044855 98 LKLSDCQLHVIP----SFLLQQDHLKFLDLSHNKL 128 (279)
Q Consensus 98 L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~ 128 (279)
|.+-+|.++..+ ..+..+|+|+.|++.+...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 777777764433 2455677888888776543
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=5.6e-06 Score=61.48 Aligned_cols=127 Identities=18% Similarity=0.219 Sum_probs=83.2
Q ss_pred cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855 22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS 101 (279)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 101 (279)
+++++++.++. .....=...-....+++++|.+. ....+..++.|.+|.+++|. +..+....-..+++|+.|.+.
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchh---hcccCCCccccceEEecCCc-ceeeccchhhhccccceEEec
Confidence 45566665544 11110112346677888888764 22456777888888887665 445554445667888889998
Q ss_pred CCcCcccCh--hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC
Q 044855 102 DCQLHVIPS--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN 156 (279)
Q Consensus 102 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 156 (279)
+|.+..+.. .+..||+|++|.+-+|....... .-...+..++.|+.||+.+-
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~---YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN---YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccC---ceeEEEEecCcceEeehhhh
Confidence 888866643 56678889998888887764332 33446677888888888754
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=4.2e-06 Score=46.82 Aligned_cols=37 Identities=38% Similarity=0.620 Sum_probs=30.2
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccC
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ 56 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 56 (279)
++|++|++++|+++ .+|..+.++++|++|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57899999999998 56666889999999999999887
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=9.2e-07 Score=79.42 Aligned_cols=127 Identities=18% Similarity=0.144 Sum_probs=75.5
Q ss_pred ccceeeeecCCcccccccCC-CCCCCCceeEEEecCCcC--cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855 68 SKLEVLLLSSGSNMLQVKTE-SWHPTSQLKVLKLSDCQL--HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS 144 (279)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 144 (279)
.+|++|++++.......... .-..+|.|+.|.+++-.+ +++.....++|+|..||++++++.. + .+++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-------l-~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-------L-SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-------c-HHHhc
Confidence 57777877765443333222 224577888888877655 3444455567888888888877652 1 56677
Q ss_pred cCcccceeccCC------CCccccCCCCCcEEEccccEeeeec------cccccCCCCccEEeccCCcCc
Q 044855 145 STSLEGLDISGN------IPNWIGNISTLRVLLMSKNYLEANI------PVQLNHLKSLELIDIFENSLS 202 (279)
Q Consensus 145 ~~~L~~l~l~~~------~~~~~~~~~~L~~L~l~~~~l~~~~------~~~l~~~~~L~~l~l~~~~~~ 202 (279)
+++|+.|.+.+- ....+.++++|+.||+|+....... .+.-..+|+|+.||.++..+.
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777777766533 1123456788888888876533211 111224666666666655544
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.05 E-value=1.1e-07 Score=77.73 Aligned_cols=237 Identities=15% Similarity=0.078 Sum_probs=132.0
Q ss_pred cCCCCccEEEeeCC-cccccCCc-cccCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCccccc-ccCCCCCC
Q 044855 16 NHLTHLKVLDIFNN-QLSGNFPS-TLTNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGSNMLQ-VKTESWHP 91 (279)
Q Consensus 16 ~~l~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~ 91 (279)
.++++++.|++..| .++...-+ .-..+++|+++++++|. +++.-.....+++..++.+...+|.-... .....-..
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 36899999999985 44432222 23568999999999994 44322223456666677666655532111 11111133
Q ss_pred CCceeEEEecCCcC-ccc--ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-------Cccc
Q 044855 92 TSQLKVLKLSDCQL-HVI--PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-------PNWI 161 (279)
Q Consensus 92 ~~~L~~L~l~~~~~-~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-------~~~~ 161 (279)
+..+.++++..|.. +.. ...-..+..|+.+..+++...+.. .+..--.+..+|+.+-+.++- ...-
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~----~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE----VLWALGQHCHNLQVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH----HHHHHhcCCCceEEEeccccchhhhhhhhhhh
Confidence 34455555555532 221 122234566666666654321110 111222345566666666551 1222
Q ss_pred cCCCCCcEEEccccEeeee--ccccccCCCCccEEeccCCcCcc---------------cceEEEeecCcc-CCCCchhh
Q 044855 162 GNISTLRVLLMSKNYLEAN--IPVQLNHLKSLELIDIFENSLSS---------------KLITLDLRDNKF-FGRIPYQI 223 (279)
Q Consensus 162 ~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~l~l~~~~~~~---------------~L~~L~l~~~~~-~~~~~~~~ 223 (279)
.+++.|+.+++.++..... +...-.+++.|+.+.++++.... .++.+.+++++. ++...+.+
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 4567777777777764332 22223467777777777664321 677888888865 34455667
Q ss_pred hcCcCCcEEEccCCc-ccccCCh-hhhcccCCcEE
Q 044855 224 NELSNLHVLLLRGNS-LQGHIPN-ELCQLAKLRIM 256 (279)
Q Consensus 224 ~~~~~L~~L~l~~n~-~~~~~~~-~~~~~~~L~~L 256 (279)
..+++|+.+++..++ ++.+... .-..+|+++..
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 889999999999886 4433333 33456766654
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=2.7e-06 Score=66.09 Aligned_cols=225 Identities=20% Similarity=0.179 Sum_probs=134.3
Q ss_pred cccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCccc---------ccccCCCCCCCCceeEEEecCCcC
Q 044855 38 TLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNM---------LQVKTESWHPTSQLKVLKLSDCQL 105 (279)
Q Consensus 38 ~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~ 105 (279)
.+..+..+..++++||.+..... ...+++-.+|+..+++..... ......++.+||.|+..++++|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 35568889999999998863211 234555677888777653211 112234567889999999999987
Q ss_pred -cccC----hhhhcCCCccEEEeeCCcccccCCCCCcCcc---------hhhccCcccceeccCCCC---------cccc
Q 044855 106 -HVIP----SFLLQQDHLKFLDLSHNKLVGNFPICGKMDD---------GLRSSTSLEGLDISGNIP---------NWIG 162 (279)
Q Consensus 106 -~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------~~~~~~~L~~l~l~~~~~---------~~~~ 162 (279)
...| ..+.+.+.|..|.+++|.+..... ..+.. -...-+.|+.+....|-. ..+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG--~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG--GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccch--hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 3333 345567889999999987642221 11111 122234566666655411 1122
Q ss_pred CCCCCcEEEccccEeeee-----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCCCchhh
Q 044855 163 NISTLRVLLMSKNYLEAN-----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGRIPYQI 223 (279)
Q Consensus 163 ~~~~L~~L~l~~~~l~~~-----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~~~~~~ 223 (279)
.-..|+.+.+..|.+... ....+..+++|+.|++.+|.++. .|+.|.+.+|-+.......+
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 234677777777776432 11234567788888888887653 55777777776644433222
Q ss_pred ------hcCcCCcEEEccCCcccccCChh-----h--hcccCCcEEEccCCEee
Q 044855 224 ------NELSNLHVLLLRGNSLQGHIPNE-----L--CQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 224 ------~~~~~L~~L~l~~n~~~~~~~~~-----~--~~~~~L~~L~l~~n~l~ 264 (279)
...|+|..|-..+|.+.+..... + ..+|-|..+.+.||.+.
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 13567777777777654332221 1 13566777777777776
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.99 E-value=1.7e-06 Score=77.80 Aligned_cols=132 Identities=17% Similarity=0.109 Sum_probs=71.3
Q ss_pred CcCcEEeccCcccCcccchhhh-cccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEE
Q 044855 43 TSLEYLDLSSINFQGTFSINSL-ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFL 121 (279)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 121 (279)
.+|++|+++|...-...+.... ..+|.|+.|.+.+-.....--...+..+|+|..||+++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5666666666543222222222 34466666666543322211122345566666667766666655 455666666666
Q ss_pred EeeCCcccccCCCCCcCcchhhccCcccceeccCCC-----------CccccCCCCCcEEEccccEeeee
Q 044855 122 DLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-----------PNWIGNISTLRVLLMSKNYLEAN 180 (279)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~~~~L~~L~l~~~~l~~~ 180 (279)
.+.+-.+... .....+..+++|+.||++... .+.-..+|.|+.||.++..+.+.
T Consensus 201 ~mrnLe~e~~-----~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESY-----QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCch-----hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6665444311 112345556666666666430 11223478899999998876653
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=1.7e-07 Score=81.86 Aligned_cols=119 Identities=24% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855 3 SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML 82 (279)
Q Consensus 3 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 82 (279)
++|.+. ....++.-++.++.|+|++|+++.. +.+..+++|++|||+.|.+. .++--....|. |+.|.+++|...
T Consensus 172 syN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~- 245 (1096)
T KOG1859|consen 172 SYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT- 245 (1096)
T ss_pred chhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-
Confidence 344444 4455666678888888888887732 26777888888888888776 33323333343 788888777521
Q ss_pred cccCCCCCCCCceeEEEecCCcCcccC--hhhhcCCCccEEEeeCCccc
Q 044855 83 QVKTESWHPTSQLKVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 129 (279)
....+.++.+|+.|++++|-+.... ..++.+..|+.|++.+|.+.
T Consensus 246 --tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 246 --TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred --hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 1233566778888888888764443 24556677888888888764
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.88 E-value=9.5e-05 Score=52.25 Aligned_cols=109 Identities=16% Similarity=0.243 Sum_probs=63.2
Q ss_pred CCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCC
Q 044855 10 HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESW 89 (279)
Q Consensus 10 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 89 (279)
+...+|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +. .+....+..++.++.+.+.. ....+....|
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc--cccccccccc
Confidence 3456888899999999885 455455667888889999998875 44 45556778887888888854 2445556677
Q ss_pred CCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeC
Q 044855 90 HPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSH 125 (279)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 125 (279)
..+++|+.+.+..+ +..++. .+..+ +++.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 78888888888664 555544 33344 777777764
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.72 E-value=1.8e-06 Score=75.34 Aligned_cols=112 Identities=24% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCCCccEEEeeCCc-cccc-CCccccCCCcCcEEeccCc-ccCccc---chhhhcccccceeeeecCCcccccccCCCC-
Q 044855 17 HLTHLKVLDIFNNQ-LSGN-FPSTLTNFTSLEYLDLSSI-NFQGTF---SINSLANHSKLEVLLLSSGSNMLQVKTESW- 89 (279)
Q Consensus 17 ~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 89 (279)
.++.|+.+.+..+. ++.. .......+++|+.|+++++ ...... .......+.+|+.++++++..........+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46778888887763 3321 2234567788888888773 111111 122345567788888877764333333222
Q ss_pred CCCCceeEEEecCCc-C--cccChhhhcCCCccEEEeeCCcc
Q 044855 90 HPTSQLKVLKLSDCQ-L--HVIPSFLLQQDHLKFLDLSHNKL 128 (279)
Q Consensus 90 ~~~~~L~~L~l~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~ 128 (279)
..+++|++|.+.+|. + ..+......++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 236788888877665 3 23344555677888888887654
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=3.9e-06 Score=58.46 Aligned_cols=86 Identities=26% Similarity=0.391 Sum_probs=46.3
Q ss_pred CCCcEEEccccEeeeecccccc-CCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855 165 STLRVLLMSKNYLEANIPVQLN-HLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 243 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (279)
..|+..++++|.+.+ +|..|. .++..+ ++++++|++. .+|+.+..++.|+.++++.|++. ..
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t--------------~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~ 115 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTAT--------------TLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AE 115 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhh--------------hhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cc
Confidence 445556666666655 333332 223333 3344444442 35555666666666666666666 55
Q ss_pred ChhhhcccCCcEEEccCCEeeeecC
Q 044855 244 PNELCQLAKLRIMDLSNNIFSGSIP 268 (279)
Q Consensus 244 ~~~~~~~~~L~~L~l~~n~l~~~~p 268 (279)
|..+..+.++..|+.-+|.+. .+|
T Consensus 116 p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred hHHHHHHHhHHHhcCCCCccc-cCc
Confidence 555555666666666666554 444
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=7.8e-06 Score=57.01 Aligned_cols=93 Identities=25% Similarity=0.369 Sum_probs=63.5
Q ss_pred CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhh-cCcCCcEEEccCCcccccCC
Q 044855 166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN-ELSNLHVLLLRGNSLQGHIP 244 (279)
Q Consensus 166 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~ 244 (279)
.+..++++.|.+.. ++...+.+.... .|+.+++++|.+ ..+|..|. ..+.++.+++++|++. .+|
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~-----------el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvP 93 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGY-----------ELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVP 93 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCc-----------eEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hch
Confidence 45566677766543 333333222111 344566666665 34666664 5678999999999999 778
Q ss_pred hhhhcccCCcEEEccCCEeeeecCccccC
Q 044855 245 NELCQLAKLRIMDLSNNIFSGSIPSCLGN 273 (279)
Q Consensus 245 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 273 (279)
+.+..++.|+.|+++.|++. ..|+.+..
T Consensus 94 eE~Aam~aLr~lNl~~N~l~-~~p~vi~~ 121 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNPLN-AEPRVIAP 121 (177)
T ss_pred HHHhhhHHhhhcccccCccc-cchHHHHH
Confidence 88999999999999999998 66655443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00044 Score=58.03 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=38.6
Q ss_pred cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855 16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL 95 (279)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 95 (279)
..+++++.|++++|.++ .+|. + -++|++|.+++|.-....+ ..+ ..+|+.|.+++|..+..++ .+|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccc-------ccc
Confidence 34677777777777666 4442 1 2357777777654321222 111 1456666666654332222 245
Q ss_pred eEEEecCCc
Q 044855 96 KVLKLSDCQ 104 (279)
Q Consensus 96 ~~L~l~~~~ 104 (279)
+.|.+.++.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 555555443
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00029 Score=59.06 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=71.7
Q ss_pred hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCCCCcEEEcccc-Eeeeeccccc
Q 044855 112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKN-YLEANIPVQL 185 (279)
Q Consensus 112 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l 185 (279)
+..+.+++.|++++|.+. .++ .-+.+|+.|.++++ +|..+ .++|+.|.+++| .+.. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-------sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP--- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-------SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP--- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-------ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc---
Confidence 445788999999998765 222 12456888888865 23222 357899999988 4443 33
Q ss_pred cCCCCccEEeccCCc------CcccceEEEeecCccC-C-CCchhhhcC-cCCcEEEccCCcccccCChhhhcccCCcEE
Q 044855 186 NHLKSLELIDIFENS------LSSKLITLDLRDNKFF-G-RIPYQINEL-SNLHVLLLRGNSLQGHIPNELCQLAKLRIM 256 (279)
Q Consensus 186 ~~~~~L~~l~l~~~~------~~~~L~~L~l~~~~~~-~-~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 256 (279)
++|+.|++..+. ++++|+.|.+.++.-. . ..+ ..+ ++|+.|++++|... ..|..+. .+|+.|
T Consensus 112 ---~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ---cccceEEeCCCCCcccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 245555554443 2336666666433210 0 011 112 46778888777754 3333332 457777
Q ss_pred EccCC
Q 044855 257 DLSNN 261 (279)
Q Consensus 257 ~l~~n 261 (279)
+++.|
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 77665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.40 E-value=4.8e-05 Score=58.87 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=75.7
Q ss_pred CCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchh-hhcccccceeeeecCCcccccccCCCC
Q 044855 11 LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSIN-SLANHSKLEVLLLSSGSNMLQVKTESW 89 (279)
Q Consensus 11 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~ 89 (279)
+......+..|+.+++.+..++ +. ..|-.+|+|++|.++.|......... ...++++|+++++++|.+..--.....
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 4444556777888888887766 22 23667889999999999444333333 345669999999998875432223334
Q ss_pred CCCCceeEEEecCCcCcccC----hhhhcCCCccEEEeeCCc
Q 044855 90 HPTSQLKVLKLSDCQLHVIP----SFLLQQDHLKFLDLSHNK 127 (279)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 127 (279)
..+.+|..|++.+|..+.+. ..+..+++|++|+-....
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 66778888888888765443 234456888877765544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=0.00016 Score=56.07 Aligned_cols=113 Identities=23% Similarity=0.225 Sum_probs=63.7
Q ss_pred CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCC-CCCCCceeEEEecCCcCcccC--hh
Q 044855 35 FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTES-WHPTSQLKVLKLSDCQLHVIP--SF 111 (279)
Q Consensus 35 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~ 111 (279)
+......+..|+.+++.++.++ ....+..+++|++|.++.|.......... ...+|+|+++++++|++..+. ..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt---t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT---TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhcccee---ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 3333444556666666666544 33456677788888888774322222221 234488888888888875432 13
Q ss_pred hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceec
Q 044855 112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDI 153 (279)
Q Consensus 112 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 153 (279)
+..+.+|..|++..|...... ..-...+.-++.|.+++-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~---dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLD---DYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcchhhhhcccCCccccc---cHHHHHHHHhhhhccccc
Confidence 455677777888877654311 111223344555666653
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.0014 Score=46.16 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=61.5
Q ss_pred cCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccccc
Q 044855 6 NFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVK 85 (279)
Q Consensus 6 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 85 (279)
.+..+...+|..+++|+.+.+.++ +......+|.++++++.+.+.. .+. .+....+..+++++.+.+..+ ...+.
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~--~~~i~ 96 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN--ITEIG 96 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT---BEEH
T ss_pred CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc--ccEEc
Confidence 445566778999999999999885 5545556788998999999976 333 445567888999999999654 45667
Q ss_pred CCCCCCCCceeEEEecCCcCcccCh-hhhcCCCc
Q 044855 86 TESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHL 118 (279)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L 118 (279)
...+..+ +|+.+.+.. .+..++. .+..+++|
T Consensus 97 ~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 97 SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred hhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7778887 999998876 4444543 44455555
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.20 E-value=0.00025 Score=33.07 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=17.1
Q ss_pred CCcEEEccCCEeeeecCccccCC
Q 044855 252 KLRIMDLSNNIFSGSIPSCLGNV 274 (279)
Q Consensus 252 ~L~~L~l~~n~l~~~~p~~~~~~ 274 (279)
+|++||+++|.++ .+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788899999888 888877654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=2.3e-05 Score=61.29 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=37.1
Q ss_pred CcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCccE
Q 044855 43 TSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHLKF 120 (279)
Q Consensus 43 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~ 120 (279)
.+.+.|+.+||.+.+ .....+|+.|++|.++-|.+.+ ...+..+++|+.|.|+.|.|..+.. -+.++|+|+.
T Consensus 19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCCccH---HHHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 344445555554431 1233445555555554443221 1123445555555555555544443 3344555555
Q ss_pred EEeeCCccc
Q 044855 121 LDLSHNKLV 129 (279)
Q Consensus 121 L~l~~~~~~ 129 (279)
|.+..|...
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 555555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.87 E-value=0.00017 Score=63.04 Aligned_cols=208 Identities=23% Similarity=0.180 Sum_probs=119.9
Q ss_pred cccCCCCccEEEeeCC-cccccC----CccccCCCcCcEEeccCcc-cCcccchhhh-cccccceeeeecCCcc-ccccc
Q 044855 14 CLNHLTHLKVLDIFNN-QLSGNF----PSTLTNFTSLEYLDLSSIN-FQGTFSINSL-ANHSKLEVLLLSSGSN-MLQVK 85 (279)
Q Consensus 14 ~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~~-~~~~~ 85 (279)
....+++|+.|++.++ ...... ......+++|+.++++.+. ++ ......+ ..++.|+.|.+..|.. .....
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 3457899999999873 221111 1234557999999999997 55 3333333 4489999999877764 22233
Q ss_pred CCCCCCCCceeEEEecCCcC---cccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------
Q 044855 86 TESWHPTSQLKVLKLSDCQL---HVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------ 156 (279)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------ 156 (279)
......+++|++|++++|.. ..+......+++++.+.+..... +..++.+.+.+.
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------------c~~l~~~~l~~~~~~~~d 351 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------------CPSLTDLSLSGLLTLTSD 351 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------------CccHHHHHHHHhhccCch
Confidence 33446788999999998855 22333455678777766544321 222333332221
Q ss_pred -C-CccccCCCCCcEEEccccEeeeec-cccccCCCCcc-EEeccCCcCcccceEEEeecCccC-CCCchhhhc-CcCCc
Q 044855 157 -I-PNWIGNISTLRVLLMSKNYLEANI-PVQLNHLKSLE-LIDIFENSLSSKLITLDLRDNKFF-GRIPYQINE-LSNLH 230 (279)
Q Consensus 157 -~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~-~~~L~ 230 (279)
. .-....++.++.+.+..+...... ...+..++.|. .+........ .++.|++..+... ......... +..+.
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~-~l~~L~l~~~~~~t~~~l~~~~~~~~~~~ 430 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSD-SLRVLNLSDCRLVTDKGLRCLADSCSNLK 430 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCC-ccceEecccCccccccchHHHhhhhhccc
Confidence 1 112456788888888887744433 24566777773 2222222221 2677777777542 222222222 56677
Q ss_pred EEEccCCcc
Q 044855 231 VLLLRGNSL 239 (279)
Q Consensus 231 ~L~l~~n~~ 239 (279)
.+++.++..
T Consensus 431 ~l~~~~~~~ 439 (482)
T KOG1947|consen 431 DLDLSGCRV 439 (482)
T ss_pred cCCccCccc
Confidence 777777763
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=3.3e-05 Score=60.41 Aligned_cols=101 Identities=23% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE
Q 044855 18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV 97 (279)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 97 (279)
+.+.+.|+..+|.++... ...+|+.|++|.|+-|.++ ....+..|++|++|.+..|.+..-.....+.++|+|++
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 456777888888877432 3467888888888888776 34567788888888888876554445556688888998
Q ss_pred EEecCCcC-ccc-----ChhhhcCCCccEEEe
Q 044855 98 LKLSDCQL-HVI-----PSFLLQQDHLKFLDL 123 (279)
Q Consensus 98 L~l~~~~~-~~~-----~~~~~~~~~L~~L~l 123 (279)
|.+..|.. ..- ...+..+|+|+.|+-
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 88877654 111 134556788887753
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.88 E-value=0.0045 Score=26.68 Aligned_cols=14 Identities=50% Similarity=0.752 Sum_probs=7.1
Q ss_pred cCCcEEEccCCEee
Q 044855 251 AKLRIMDLSNNIFS 264 (279)
Q Consensus 251 ~~L~~L~l~~n~l~ 264 (279)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666777777665
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0086 Score=27.73 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=12.4
Q ss_pred CccEEEeeCCcccccCCcccc
Q 044855 20 HLKVLDIFNNQLSGNFPSTLT 40 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~ 40 (279)
+|++|++++|.++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4667777777766 5555444
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.44 E-value=4.2e-05 Score=66.05 Aligned_cols=105 Identities=29% Similarity=0.249 Sum_probs=60.1
Q ss_pred ccCCCCCcEEEccccEeee----ecccccc----CCCCccEEeccCCcCcc---------------cceEEEeecCccCC
Q 044855 161 IGNISTLRVLLMSKNYLEA----NIPVQLN----HLKSLELIDIFENSLSS---------------KLITLDLRDNKFFG 217 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~~l~~----~~~~~l~----~~~~L~~l~l~~~~~~~---------------~L~~L~l~~~~~~~ 217 (279)
+.....++.++++.|.+.. ..+..+. ...+++.+++.+|.++. .+..+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 3345556666666665422 1112222 35566666666666553 24457777777654
Q ss_pred CCch----hhhcC-cCCcEEEccCCcccccCChhh----hcccCCcEEEccCCEeee
Q 044855 218 RIPY----QINEL-SNLHVLLLRGNSLQGHIPNEL----CQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 218 ~~~~----~~~~~-~~L~~L~l~~n~~~~~~~~~~----~~~~~L~~L~l~~n~l~~ 265 (279)
.... .+..+ +.++.++++.|.+++.....+ ..++.++.+.+.+|++..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4222 22334 566788888888776544433 346778888888887753
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0019 Score=48.36 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=39.6
Q ss_pred CcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCC-CCCceeEEEecCC-cCcccC-hhhhcCCCccEE
Q 044855 45 LEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWH-PTSQLKVLKLSDC-QLHVIP-SFLLQQDHLKFL 121 (279)
Q Consensus 45 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~-~~~~~~~~L~~L 121 (279)
++.++-+++.+. ......+..++.++.|.+.+|....+-..+.+. ..++|+.|++++| .|++-. ..+..+++|+.|
T Consensus 103 IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 444555555443 333344455555555555555443333322222 3456666666665 333332 244556666666
Q ss_pred EeeC
Q 044855 122 DLSH 125 (279)
Q Consensus 122 ~l~~ 125 (279)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0028 Score=47.50 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=55.7
Q ss_pred CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhh-hcCcCCcEEEccCCc-cccc
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQI-NELSNLHVLLLRGNS-LQGH 242 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~-~~~~ 242 (279)
..++.++.+++.+.......+..++.++.+.+.+|.-.+ +..-+-+ .-.++|+.|++++|+ |++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-------------D~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-------------DWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh-------------hHHHHHhcccccchheeeccCCCeechh
Confidence 457888888887776666667777776666655543111 1111111 135789999999885 8877
Q ss_pred CChhhhcccCCcEEEccC
Q 044855 243 IPNELCQLAKLRIMDLSN 260 (279)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~ 260 (279)
....+..+++|+.|.+.+
T Consensus 168 GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 168 GLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHHHhhhhHHHHhcC
Confidence 888888888888887765
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.26 E-value=0.014 Score=27.57 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=7.6
Q ss_pred cCCcEEEccCCcccccCC
Q 044855 227 SNLHVLLLRGNSLQGHIP 244 (279)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~ 244 (279)
++|+.|++++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 345555555555544333
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.90 E-value=0.16 Score=24.35 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=14.7
Q ss_pred CceeEEEecCCcCcccChhhh
Q 044855 93 SQLKVLKLSDCQLHVIPSFLL 113 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~ 113 (279)
++|++|++.+|.++.+|...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567777777777777776543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.90 E-value=0.16 Score=24.35 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=14.7
Q ss_pred CceeEEEecCCcCcccChhhh
Q 044855 93 SQLKVLKLSDCQLHVIPSFLL 113 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~ 113 (279)
++|++|++.+|.++.+|...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567777777777777776543
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.50 E-value=0.0028 Score=54.96 Aligned_cols=79 Identities=25% Similarity=0.258 Sum_probs=46.6
Q ss_pred CCCCcEEEccccEeeee----ccccccCCCC-ccEEeccCCcCcc---------------cceEEEeecCccCCCCc---
Q 044855 164 ISTLRVLLMSKNYLEAN----IPVQLNHLKS-LELIDIFENSLSS---------------KLITLDLRDNKFFGRIP--- 220 (279)
Q Consensus 164 ~~~L~~L~l~~~~l~~~----~~~~l~~~~~-L~~l~l~~~~~~~---------------~L~~L~l~~~~~~~~~~--- 220 (279)
..++++|.+.+|.++.. ....+...+. +..+++..|.+.+ .++.+++..|++++...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555566655554421 1122333333 4445665555543 55677888888766543
Q ss_pred -hhhhcCcCCcEEEccCCccccc
Q 044855 221 -YQINELSNLHVLLLRGNSLQGH 242 (279)
Q Consensus 221 -~~~~~~~~L~~L~l~~n~~~~~ 242 (279)
..+..++.++.+.+.+|.+.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccH
Confidence 3345678889999999988754
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.18 E-value=0.18 Score=24.26 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=15.2
Q ss_pred cCCcEEEccCCEeeeecCcc
Q 044855 251 AKLRIMDLSNNIFSGSIPSC 270 (279)
Q Consensus 251 ~~L~~L~l~~n~l~~~~p~~ 270 (279)
++|+.|++++|+++ .+|+.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 46788999999988 88863
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.26 E-value=0.025 Score=43.61 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855 3 SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML 82 (279)
Q Consensus 3 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 82 (279)
+-..+..++.-.++.....+.||++.+++- .....|..+..+..++++.|.+. ..+..+.+...+.++....|. .
T Consensus 26 s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~-~- 100 (326)
T KOG0473|consen 26 SLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNN-H- 100 (326)
T ss_pred CHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccc-h-
Confidence 333444444456677888889999988876 45556777888888888888764 233566666667777665553 2
Q ss_pred cccCCCCCCCCceeEEEecCCcC
Q 044855 83 QVKTESWHPTSQLKVLKLSDCQL 105 (279)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~ 105 (279)
.-.+.+++..+.++++++.++.+
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hhCCccccccCCcchhhhccCcc
Confidence 23345678888888888888765
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.13 E-value=0.5 Score=23.21 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=10.2
Q ss_pred cCCcEEEccCCcccccCCh
Q 044855 227 SNLHVLLLRGNSLQGHIPN 245 (279)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~ 245 (279)
++|+.|++++|.+.+....
T Consensus 2 ~~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 2 PSLRELDLSNNKLGDEGAR 20 (28)
T ss_pred CccCEEECCCCCCCHHHHH
Confidence 3456666666666544333
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.85 E-value=0.12 Score=40.00 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=39.2
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccC
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ 56 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 56 (279)
|++.|.+. .+|..+.++.+++.+++..|... ..|.++...|++++++..++++.
T Consensus 71 ~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 71 DLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 34555555 56667777777777777777666 77888888888888888888765
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.40 E-value=1.8 Score=38.03 Aligned_cols=64 Identities=25% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCCcCcEEeccCcccCcccchhhh-cccccceeeeecCCc--ccccccCCCCCCCCceeEEEecCCcC
Q 044855 41 NFTSLEYLDLSSINFQGTFSINSL-ANHSKLEVLLLSSGS--NMLQVKTESWHPTSQLKVLKLSDCQL 105 (279)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~ 105 (279)
+.|.+..+++++|++........+ ...++|+.|+|++|. .........+ +...|++|-+.+|.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCcc
Confidence 455566666666655432222222 344666666666652 1111111111 223466666666665
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.30 E-value=24 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=17.6
Q ss_pred CcEEEccccEeeeeccc--cccCCCCccEEeccCC
Q 044855 167 LRVLLMSKNYLEANIPV--QLNHLKSLELIDIFEN 199 (279)
Q Consensus 167 L~~L~l~~~~l~~~~~~--~l~~~~~L~~l~l~~~ 199 (279)
++++...+|.+.+.... .....++.+.+++...
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred eeEeeccccccccccccccceeecccccccccccc
Confidence 67777777765442221 2334455666655443
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.42 E-value=2.8 Score=19.91 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.0
Q ss_pred ccCCcEEEccCCE-ee
Q 044855 250 LAKLRIMDLSNNI-FS 264 (279)
Q Consensus 250 ~~~L~~L~l~~n~-l~ 264 (279)
+++|+.|++++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778999999987 55
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.16 E-value=4.1 Score=19.63 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=6.2
Q ss_pred CccEEEeeCCccc
Q 044855 20 HLKVLDIFNNQLS 32 (279)
Q Consensus 20 ~L~~L~l~~~~~~ 32 (279)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555554443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.45 E-value=5.7 Score=35.05 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=10.9
Q ss_pred cCCcEEEccCCccccc
Q 044855 227 SNLHVLLLRGNSLQGH 242 (279)
Q Consensus 227 ~~L~~L~l~~n~~~~~ 242 (279)
..|++|-+.||++...
T Consensus 270 l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCHHHeeecCCccccc
Confidence 4577777788876543
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.96 E-value=12 Score=39.94 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=29.5
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCccc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLS 32 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 32 (279)
||++|+|....+..|..+++|++|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 79999999888899999999999999998765
No 91
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.80 E-value=33 Score=16.55 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=7.5
Q ss_pred ccCCCCccEEEee
Q 044855 15 LNHLTHLKVLDIF 27 (279)
Q Consensus 15 ~~~l~~L~~L~l~ 27 (279)
+..+|+|+.||..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 3456666666653
Done!