Query 044855
Match_columns 279
No_of_seqs 170 out of 2493
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 12:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-33 6.3E-38 255.6 22.3 74 205-278 634-707 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.7E-32 2.3E-36 245.4 24.9 261 2-270 375-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 4.1E-32 1.4E-36 241.1 21.4 269 1-278 260-550 (606)
4 2id5_A Lingo-1, leucine rich r 100.0 5.3E-32 1.8E-36 233.8 20.3 269 1-277 38-322 (477)
5 3v47_A TOLL-like receptor 5B a 100.0 3.2E-32 1.1E-36 233.8 18.6 277 1-278 36-398 (455)
6 3v47_A TOLL-like receptor 5B a 100.0 4E-31 1.4E-35 227.0 18.0 269 1-269 60-413 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1.9E-30 6.3E-35 224.2 20.4 258 1-266 62-335 (477)
8 4eco_A Uncharacterized protein 100.0 3.2E-31 1.1E-35 236.1 15.4 265 2-278 256-569 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-30 8.6E-35 229.6 20.7 128 1-130 38-167 (606)
10 3t6q_A CD180 antigen; protein- 100.0 3.3E-30 1.1E-34 228.8 21.5 125 1-127 39-164 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-30 7.3E-35 230.0 19.2 76 2-78 63-138 (606)
12 4eco_A Uncharacterized protein 100.0 9.5E-31 3.2E-35 233.0 15.3 265 1-278 212-539 (636)
13 4fmz_A Internalin; leucine ric 100.0 2.3E-29 7.9E-34 208.7 22.6 253 2-278 51-336 (347)
14 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-30 7.2E-35 211.8 15.8 234 19-262 50-302 (313)
15 3o6n_A APL1; leucine-rich repe 100.0 2.9E-30 1E-34 217.4 16.9 248 2-264 52-331 (390)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-29 6E-34 225.1 22.2 276 1-278 58-570 (635)
17 2z63_A TOLL-like receptor 4, v 100.0 4.7E-30 1.6E-34 226.2 17.8 127 1-129 34-162 (570)
18 4ecn_A Leucine-rich repeat pro 100.0 1E-29 3.4E-34 231.1 17.4 264 2-278 498-809 (876)
19 3oja_B Anopheles plasmodium-re 100.0 1.3E-29 4.6E-34 224.3 17.4 250 2-264 58-337 (597)
20 3j0a_A TOLL-like receptor 5; m 100.0 6.5E-29 2.2E-33 227.9 21.2 257 1-264 30-375 (844)
21 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-29 2E-33 203.2 18.3 225 43-278 50-294 (313)
22 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-29 2E-33 217.0 19.0 101 1-105 27-127 (520)
23 2z63_A TOLL-like receptor 4, v 100.0 3.1E-29 1.1E-33 221.0 17.3 107 1-108 58-164 (570)
24 3o6n_A APL1; leucine-rich repe 100.0 3.2E-28 1.1E-32 204.9 22.5 258 1-266 75-354 (390)
25 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-28 8.1E-33 201.4 21.2 264 2-279 40-324 (332)
26 4ecn_A Leucine-rich repeat pro 100.0 3.4E-29 1.2E-33 227.7 17.5 265 1-278 454-779 (876)
27 1ziw_A TOLL-like receptor 3; i 100.0 4E-28 1.4E-32 218.2 24.2 275 1-277 31-432 (680)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-28 6.2E-33 220.4 21.8 271 1-272 254-605 (680)
29 2z81_A CD282 antigen, TOLL-lik 100.0 7E-29 2.4E-33 217.9 18.1 130 143-278 331-500 (549)
30 1xku_A Decorin; proteoglycan, 100.0 1.6E-27 5.5E-32 196.3 24.6 264 2-278 38-322 (330)
31 1xku_A Decorin; proteoglycan, 100.0 4.6E-28 1.6E-32 199.5 21.2 248 1-262 58-330 (330)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-28 9.7E-33 214.5 20.0 102 1-106 58-159 (562)
33 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-28 1.6E-32 211.3 21.1 261 1-278 6-402 (520)
34 3oja_B Anopheles plasmodium-re 100.0 7.9E-28 2.7E-32 213.0 22.1 256 1-266 81-360 (597)
35 4fmz_A Internalin; leucine ric 100.0 2.2E-27 7.4E-32 196.8 22.7 244 13-278 38-314 (347)
36 2z80_A TOLL-like receptor 2, v 100.0 8.5E-29 2.9E-33 205.7 13.0 256 2-268 38-318 (353)
37 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-28 3.7E-33 216.7 14.2 131 1-132 32-164 (549)
38 3j0a_A TOLL-like receptor 5; m 100.0 7.4E-28 2.5E-32 220.9 20.3 267 2-278 11-365 (844)
39 2ft3_A Biglycan; proteoglycan, 100.0 6E-28 2.1E-32 199.0 17.8 247 1-262 60-331 (332)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-27 4.8E-32 210.1 19.1 267 1-278 82-500 (562)
41 1o6v_A Internalin A; bacterial 100.0 8.5E-27 2.9E-31 200.6 22.4 261 1-278 74-378 (466)
42 4fcg_A Uncharacterized protein 100.0 2.2E-27 7.4E-32 195.1 16.8 221 18-264 80-314 (328)
43 1o6v_A Internalin A; bacterial 100.0 1.1E-26 3.9E-31 199.9 21.6 244 2-265 97-389 (466)
44 3zyi_A Leucine-rich repeat-con 99.9 1.3E-26 4.6E-31 198.7 20.6 225 19-264 75-303 (452)
45 3zyj_A Leucine-rich repeat-con 99.9 1.8E-26 6.1E-31 197.2 21.1 237 4-264 52-292 (440)
46 4fcg_A Uncharacterized protein 99.9 5E-27 1.7E-31 192.9 16.7 219 41-278 79-304 (328)
47 2z66_A Variable lymphocyte rec 99.9 1.8E-26 6.2E-31 188.0 18.8 239 2-265 14-262 (306)
48 1ozn_A Reticulon 4 receptor; N 99.9 7.3E-26 2.5E-30 182.6 20.2 247 2-273 18-270 (285)
49 3o53_A Protein LRIM1, AGAP0063 99.9 1E-27 3.5E-32 196.3 8.6 242 2-278 17-265 (317)
50 2z80_A TOLL-like receptor 2, v 99.9 3.1E-25 1E-29 184.3 19.0 253 15-278 27-304 (353)
51 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-25 1.1E-29 189.8 19.3 205 11-242 34-248 (457)
52 2z66_A Variable lymphocyte rec 99.9 7.7E-26 2.6E-30 184.3 14.5 256 1-277 34-300 (306)
53 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-25 1.3E-29 189.4 18.8 247 1-278 48-342 (457)
54 3oja_A Leucine-rich immune mol 99.9 2.6E-26 8.8E-31 198.2 10.9 226 17-277 32-264 (487)
55 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-25 1.1E-29 178.7 16.6 238 1-261 38-284 (285)
56 3zyi_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 185.9 20.3 231 21-278 56-293 (452)
57 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-24 4.2E-29 193.8 20.1 125 142-266 441-582 (635)
58 3zyj_A Leucine-rich repeat-con 99.9 1.8E-24 6.3E-29 184.8 19.8 232 20-278 44-282 (440)
59 1wwl_A Monocyte differentiatio 99.9 1.7E-26 5.9E-31 188.6 4.2 237 14-265 38-310 (312)
60 2z62_A TOLL-like receptor 4, v 99.9 2.3E-24 8E-29 173.0 16.4 213 19-268 28-241 (276)
61 1jl5_A Outer protein YOPM; leu 99.9 1.3E-23 4.3E-28 179.8 20.2 244 2-274 138-421 (454)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-23 5E-28 185.0 19.8 242 1-275 46-308 (622)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-25 7.6E-30 182.4 7.0 234 1-268 40-280 (317)
64 1jl5_A Outer protein YOPM; leu 99.9 4.4E-24 1.5E-28 182.7 14.1 240 1-271 17-276 (454)
65 1z7x_W Ribonuclease inhibitor; 99.9 1E-26 3.5E-31 199.9 -2.3 262 1-264 62-383 (461)
66 1z7x_W Ribonuclease inhibitor; 99.9 2.7E-26 9.1E-31 197.3 -1.3 263 1-266 91-413 (461)
67 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.1E-28 166.4 13.8 211 14-276 36-247 (272)
68 1p9a_G Platelet glycoprotein I 99.9 2.3E-22 8E-27 162.2 18.8 205 13-264 4-208 (290)
69 2o6q_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 161.1 17.5 201 20-264 17-218 (270)
70 3oja_A Leucine-rich immune mol 99.9 8.8E-24 3E-28 182.4 9.8 225 1-259 40-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 2.2E-22 7.5E-27 161.4 16.7 204 1-243 34-240 (276)
72 1wwl_A Monocyte differentiatio 99.9 3.5E-23 1.2E-27 169.0 10.2 198 17-241 93-310 (312)
73 2o6q_A Variable lymphocyte rec 99.9 2.6E-21 8.9E-26 154.7 19.3 197 1-241 22-219 (270)
74 3goz_A Leucine-rich repeat-con 99.9 4.1E-24 1.4E-28 178.0 2.8 249 1-266 4-299 (362)
75 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-21 1.9E-25 168.5 21.7 221 19-278 40-287 (622)
76 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.4E-26 159.3 16.3 194 15-264 37-230 (308)
77 2ca6_A RAN GTPase-activating p 99.9 5E-24 1.7E-28 179.1 1.8 243 10-268 23-320 (386)
78 2xwt_C Thyrotropin receptor; s 99.9 1.7E-21 5.9E-26 152.9 16.1 198 20-262 32-237 (239)
79 2ast_B S-phase kinase-associat 99.9 4E-23 1.4E-27 170.4 4.5 239 12-273 61-315 (336)
80 2xwt_C Thyrotropin receptor; s 99.9 7.4E-21 2.5E-25 149.3 13.7 199 34-278 25-232 (239)
81 1p9a_G Platelet glycoprotein I 99.9 1.6E-20 5.5E-25 151.4 15.8 193 39-278 6-198 (290)
82 4glp_A Monocyte differentiatio 99.9 1.5E-21 5.3E-26 159.1 9.6 227 18-265 63-308 (310)
83 3rfs_A Internalin B, repeat mo 99.8 7.1E-20 2.4E-24 146.4 15.7 200 42-268 18-222 (272)
84 4glp_A Monocyte differentiatio 99.8 1.4E-20 4.9E-25 153.4 10.2 202 17-242 89-309 (310)
85 2ast_B S-phase kinase-associat 99.8 3E-21 1E-25 159.1 5.9 225 1-249 76-315 (336)
86 3m19_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 140.9 16.5 178 20-241 15-193 (251)
87 2ca6_A RAN GTPase-activating p 99.8 7.7E-22 2.6E-26 165.8 -0.2 241 25-278 15-306 (386)
88 4ay9_X Follicle-stimulating ho 99.8 4.6E-19 1.6E-23 146.8 16.3 119 4-125 18-137 (350)
89 3m19_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 140.7 14.9 175 68-266 14-194 (251)
90 1h6u_A Internalin H; cell adhe 99.8 4.4E-19 1.5E-23 144.3 15.6 180 1-201 47-229 (308)
91 3goz_A Leucine-rich repeat-con 99.8 9.3E-21 3.2E-25 157.8 3.3 228 1-245 28-302 (362)
92 3ogk_B Coronatine-insensitive 99.8 9.1E-21 3.1E-25 167.7 3.3 116 163-278 376-516 (592)
93 3cvr_A Invasion plasmid antige 99.8 1E-18 3.5E-23 152.5 14.8 190 20-250 60-253 (571)
94 3ogk_B Coronatine-insensitive 99.8 2E-20 6.9E-25 165.5 1.4 261 17-278 110-439 (592)
95 1m9s_A Internalin B; cell inva 99.8 3.5E-18 1.2E-22 150.6 15.2 175 15-243 39-213 (605)
96 1h6t_A Internalin B; cell adhe 99.8 3.5E-18 1.2E-22 137.9 13.0 106 15-129 42-147 (291)
97 1h6t_A Internalin B; cell adhe 99.8 6E-18 2.1E-22 136.5 13.8 84 39-129 42-125 (291)
98 2o6s_A Variable lymphocyte rec 99.8 2.9E-18 9.8E-23 131.6 10.2 158 92-276 27-190 (208)
99 2o6s_A Variable lymphocyte rec 99.8 7E-18 2.4E-22 129.4 12.2 172 3-187 15-187 (208)
100 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.9E-22 126.2 13.0 155 65-265 41-195 (197)
101 2p1m_B Transport inhibitor res 99.7 2.2E-20 7.6E-25 165.3 -3.6 89 16-104 102-195 (594)
102 2v9t_B SLIT homolog 2 protein 99.7 1.8E-17 6.2E-22 128.2 12.9 134 93-265 32-166 (220)
103 3cvr_A Invasion plasmid antige 99.7 3.2E-17 1.1E-21 143.1 15.7 167 1-201 65-242 (571)
104 4ay9_X Follicle-stimulating ho 99.7 4.2E-17 1.5E-21 135.0 15.6 228 22-278 12-249 (350)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 5.4E-17 1.8E-21 125.5 13.9 96 159-268 75-170 (220)
106 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.3E-21 121.3 12.7 106 16-127 41-147 (197)
107 3e6j_A Variable lymphocyte rec 99.7 2.4E-16 8.3E-21 122.6 14.1 148 2-179 26-173 (229)
108 1m9s_A Internalin B; cell inva 99.7 3.5E-16 1.2E-20 137.8 15.5 163 1-182 49-214 (605)
109 2p1m_B Transport inhibitor res 99.7 2E-18 6.7E-23 152.8 0.7 243 13-259 60-405 (594)
110 3e6j_A Variable lymphocyte rec 99.7 4.6E-16 1.6E-20 121.0 13.5 133 93-265 40-173 (229)
111 2xot_A Amphoterin-induced prot 99.7 2.1E-16 7.1E-21 131.4 12.2 123 2-129 25-149 (361)
112 1xeu_A Internalin C; cellular 99.7 7.9E-17 2.7E-21 128.0 9.0 171 41-266 17-187 (263)
113 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.5E-21 126.2 10.6 158 2-179 26-186 (263)
114 2v9t_B SLIT homolog 2 protein 99.7 6.7E-16 2.3E-20 119.3 13.7 148 2-179 18-166 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-15 3.4E-20 118.4 14.3 150 22-200 14-164 (220)
116 1dce_A Protein (RAB geranylger 99.7 7.1E-18 2.4E-22 147.7 1.3 196 16-257 346-566 (567)
117 3sb4_A Hypothetical leucine ri 99.7 9.1E-16 3.1E-20 125.9 13.7 234 18-278 48-324 (329)
118 2xot_A Amphoterin-induced prot 99.7 7.9E-16 2.7E-20 127.9 11.9 148 1-156 45-199 (361)
119 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 113.1 10.0 138 92-271 23-166 (168)
120 4fdw_A Leucine rich hypothetic 99.6 7.4E-14 2.5E-18 117.3 19.3 240 17-275 111-369 (401)
121 1w8a_A SLIT protein; signaling 99.6 3.8E-15 1.3E-19 112.6 10.3 70 159-242 72-141 (192)
122 4b8c_D Glucose-repressible alc 99.6 2.5E-16 8.5E-21 142.0 3.7 101 84-192 215-319 (727)
123 3sb4_A Hypothetical leucine ri 99.6 3.3E-15 1.1E-19 122.6 9.5 215 18-258 100-328 (329)
124 1dce_A Protein (RAB geranylger 99.6 2.3E-17 7.9E-22 144.5 -3.9 192 1-234 355-567 (567)
125 2wfh_A SLIT homolog 2 protein 99.6 8.5E-15 2.9E-19 110.7 10.7 108 94-240 32-139 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 7.3E-15 2.5E-19 108.6 9.2 134 17-157 22-158 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 1E-14 3.6E-19 105.6 8.8 128 92-260 16-149 (149)
128 4b8c_D Glucose-repressible alc 99.6 2.6E-15 9E-20 135.3 6.6 157 19-187 173-338 (727)
129 4fdw_A Leucine rich hypothetic 99.6 3.6E-13 1.2E-17 113.1 18.4 240 6-264 123-383 (401)
130 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.7E-19 105.5 7.5 131 17-154 15-148 (149)
131 2wfh_A SLIT homolog 2 protein 99.5 7.7E-14 2.6E-18 105.4 12.2 123 1-129 16-139 (193)
132 2o6r_A Variable lymphocyte rec 99.5 7.9E-14 2.7E-18 104.0 11.7 131 96-267 10-140 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.5 3.5E-14 1.2E-18 105.8 9.1 112 13-129 13-126 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.5 5.5E-14 1.9E-18 104.7 9.7 133 89-264 15-153 (176)
135 1w8a_A SLIT protein; signaling 99.5 1.2E-13 3.9E-18 104.4 11.6 124 1-129 14-139 (192)
136 2o6r_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 100.1 12.3 123 2-129 14-137 (177)
137 4fs7_A Uncharacterized protein 99.5 1.5E-12 5.3E-17 109.3 17.1 116 7-126 59-195 (394)
138 1ds9_A Outer arm dynein; leuci 99.4 8.2E-15 2.8E-19 111.4 -2.4 145 94-264 24-185 (198)
139 1ds9_A Outer arm dynein; leuci 99.4 2.7E-14 9.3E-19 108.5 -1.3 147 114-278 16-177 (198)
140 4gt6_A Cell surface protein; l 99.3 2.8E-10 9.5E-15 95.6 19.5 113 7-124 51-168 (394)
141 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.2E-16 91.2 10.3 103 22-129 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 90.9 9.8 104 21-129 11-115 (170)
143 2r9u_A Variable lymphocyte rec 99.3 9.9E-12 3.4E-16 92.2 8.8 86 165-264 33-118 (174)
144 3g39_A Variable lymphocyte rec 99.3 8.7E-12 3E-16 92.1 8.4 87 165-265 30-116 (170)
145 4fs7_A Uncharacterized protein 99.3 1.5E-10 5.1E-15 97.2 17.0 99 161-278 293-391 (394)
146 4gt6_A Cell surface protein; l 99.2 7.4E-10 2.5E-14 93.0 18.8 242 7-263 75-369 (394)
147 3un9_A NLR family member X1; l 99.2 4.4E-13 1.5E-17 111.5 -2.4 153 92-249 71-261 (372)
148 3un9_A NLR family member X1; l 99.2 3.9E-13 1.3E-17 111.8 -3.0 133 68-202 101-252 (372)
149 4h09_A Hypothetical leucine ri 99.1 1.6E-08 5.5E-13 84.3 19.7 129 145-276 216-357 (379)
150 2ifg_A High affinity nerve gro 99.0 1.1E-09 3.7E-14 90.3 10.0 99 2-105 15-115 (347)
151 4h09_A Hypothetical leucine ri 99.0 1.1E-07 3.8E-12 79.2 21.8 256 13-279 40-337 (379)
152 2ifg_A High affinity nerve gro 99.0 2.9E-09 1E-13 87.7 9.7 104 22-129 11-116 (347)
153 2ra8_A Uncharacterized protein 98.9 8.6E-10 3E-14 91.1 4.2 76 89-173 135-227 (362)
154 2ra8_A Uncharacterized protein 98.9 3E-09 1E-13 87.9 6.7 205 19-262 107-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 3.5E-09 1.2E-13 79.2 2.5 104 161-264 32-164 (185)
156 3e4g_A ATP synthase subunit S, 98.6 3.4E-08 1.2E-12 72.3 4.8 85 19-104 61-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 2.7E-08 9.3E-13 74.3 2.3 117 13-129 30-164 (185)
158 3e4g_A ATP synthase subunit S, 98.5 6.7E-08 2.3E-12 70.7 3.4 85 165-262 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 8.1E-08 2.8E-12 75.5 0.4 83 40-123 167-258 (267)
160 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5.1E-11 68.3 3.8 38 163-200 168-207 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 3.3E-05 1.1E-09 57.5 3.5 102 162-263 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00024 8.2E-09 52.9 4.1 81 181-261 33-136 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0013 4.3E-08 45.6 4.8 37 204-240 32-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0036 1.2E-07 43.3 5.1 37 20-56 32-68 (130)
165 2lz0_A Uncharacterized protein 90.9 0.33 1.1E-05 31.6 4.2 49 4-53 5-53 (100)
166 2lz0_A Uncharacterized protein 70.3 5.6 0.00019 25.6 3.8 47 176-237 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-33 Score=255.64 Aligned_cols=74 Identities=34% Similarity=0.595 Sum_probs=40.1
Q ss_pred ceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 205 LITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
|+.|++++|++++.+|..+..++.|+.|++++|.+++.+|..+..+++|+.||+++|+++|.+|+.++.+++|+
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-32 Score=245.41 Aligned_cols=261 Identities=34% Similarity=0.447 Sum_probs=202.0
Q ss_pred CCCCcCcCCCCccccC--CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 2 LSSNNFEGHLPQCLNH--LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
|++|.+.+..|..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+.. +..+..+++|+.|++++|.
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEEECCSSC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc-cHHHhcCCCCCEEECCCCc
Confidence 4555555555555554 666777777777777677777777777777777777776333 3566777777888777776
Q ss_pred ccccccCCCCCCCCceeEEEecCCcCc-ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--
Q 044855 80 NMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-- 156 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-- 156 (279)
....+ +..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|
T Consensus 454 l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 454 LEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG------EIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCcC-CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC------cCChHHhcCCCCCEEECCCCcc
Confidence 43333 344667778888888888774 667777778888888888887763 34466777888888888876
Q ss_pred ---CCccccCCCCCcEEEccccEeeeeccc--------------------------------------------------
Q 044855 157 ---IPNWIGNISTLRVLLMSKNYLEANIPV-------------------------------------------------- 183 (279)
Q Consensus 157 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~-------------------------------------------------- 183 (279)
+|..++.+++|+.|++++|.+.+..|.
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 566778888888888888877644443
Q ss_pred --------------------cccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEE
Q 044855 184 --------------------QLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLL 233 (279)
Q Consensus 184 --------------------~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 233 (279)
.+..+++|+.|++++|.+.. .|+.|++++|++++.+|..+..+++|+.|+
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 34456789999999998863 899999999999999999999999999999
Q ss_pred ccCCcccccCChhhhcccCCcEEEccCCEeeeecCcc
Q 044855 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSC 270 (279)
Q Consensus 234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 270 (279)
+++|++++.+|..+..+++|+.|++++|+++|.+|+.
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999999999999963
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-32 Score=241.07 Aligned_cols=269 Identities=23% Similarity=0.267 Sum_probs=230.9
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
++++|.+.+..+.+|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+. ......+..+++|++|++++|..
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSS
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCc
Confidence 46788999888889999999999999999998 78888999999999999999987 44446788999999999999987
Q ss_pred cccccCCCCCCCCceeEEEecCCcCccc---ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVI---PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI 157 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 157 (279)
...++...+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+. .+..+..+++|++|+++++-
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL------KTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE------CTTTTTTCTTCSEEECTTCC
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC------CHHHhcCCccCCeEECCCCc
Confidence 6677777789999999999999998655 56788899999999999987643 34567788899999998771
Q ss_pred ------CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------------cceEEEeecCccCCC
Q 044855 158 ------PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------------KLITLDLRDNKFFGR 218 (279)
Q Consensus 158 ------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------------~L~~L~l~~~~~~~~ 218 (279)
+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|+.|++++|++.+.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 2347788999999999999888777888899999999999997642 789999999999888
Q ss_pred CchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 219 IPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 219 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
.+..+..+++|+.|++++|++++..+..+..++.| .|++++|.+++..|+.++.++.|+
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence 88888899999999999999998888899999999 999999999977787777777665
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-32 Score=233.83 Aligned_cols=269 Identities=21% Similarity=0.184 Sum_probs=153.2
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..+.+|.++++|++|+|++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCC
T ss_pred ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCcc
Confidence 46777787777778888888888888888877666777888888888888888776 44445567777788888877753
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC---
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--- 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--- 156 (279)
.......+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+.+. ....+..+++|+.|+++++
T Consensus 117 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 117 -VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI------PTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp -CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC------CHHHHTTCTTCCEEEEESCCCC
T ss_pred -ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc------ChhHhcccCCCcEEeCCCCcCc
Confidence 3444455667777777777777765443 3556667777777777765521 1234555566666666554
Q ss_pred --CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhh
Q 044855 157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQIN 224 (279)
Q Consensus 157 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~ 224 (279)
.+..+..+++|+.|++++|...+..+.......+|+.|++++|.+.. +|+.|++++|.+.+..+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 12234445555555555543332233322233344444444443322 444444444444433333444
Q ss_pred cCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW 277 (279)
Q Consensus 225 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l 277 (279)
.+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..|..++.|
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 44444444444444444444444444444444444444443333334444433
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-32 Score=233.79 Aligned_cols=277 Identities=22% Similarity=0.234 Sum_probs=178.3
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCccccc-CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN-FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
||++|.+++..|.+|+++++|++|++++|.+.+. .+..|.++++|++|++++|.+. ......+..+++|++|++++|.
T Consensus 36 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 36 DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp ECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCEEECTTSC
T ss_pred EecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-ccChhhccCcccCCEEeCCCCC
Confidence 5789999988899999999999999999988644 3567889999999999999887 4445678889999999999887
Q ss_pred cccc-ccCCCCCCCCceeEEEecCCcCccc-Chh-hhcCCCccEEEeeCCcccccCCCCCcCc-----------------
Q 044855 80 NMLQ-VKTESWHPTSQLKVLKLSDCQLHVI-PSF-LLQQDHLKFLDLSHNKLVGNFPICGKMD----------------- 139 (279)
Q Consensus 80 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~----------------- 139 (279)
.... .....+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+.+..+..-...
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence 5432 2334578889999999999988766 443 7788999999999988765443100000
Q ss_pred -----------chhhccCcccceeccCCCCc-----cc-------------------------------------c--CC
Q 044855 140 -----------DGLRSSTSLEGLDISGNIPN-----WI-------------------------------------G--NI 164 (279)
Q Consensus 140 -----------~~~~~~~~L~~l~l~~~~~~-----~~-------------------------------------~--~~ 164 (279)
..+..+++|++|+++++-.. .+ . ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 00122345666666554110 00 0 01
Q ss_pred CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEEc
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLL 234 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 234 (279)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. +|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 355555555555555555555556666666666555432 5556666666555544555555556666666
Q ss_pred cCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 235 RGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 235 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
++|++++..+..+..+++|+.|++++|.+++..+..|..++.|+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 66665555555555556666666666665543333445555443
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=4e-31 Score=227.00 Aligned_cols=269 Identities=21% Similarity=0.197 Sum_probs=211.6
Q ss_pred CCCCCcCcC-CCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccc-hhhhcccccceeeeecCC
Q 044855 1 DLSSNNFEG-HLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS-INSLANHSKLEVLLLSSG 78 (279)
Q Consensus 1 ~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 78 (279)
+|++|.+.+ ..+.+|+.+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+ ...+..+++|++|++++|
T Consensus 60 ~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 60 KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp ECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred ECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 467787763 446788999999999999999987778889999999999999998874332 234778899999999888
Q ss_pred cccccccCCCCCCCCceeEEEecCCcCcccC-hhhh----------------------------------cCCCccEEEe
Q 044855 79 SNMLQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLL----------------------------------QQDHLKFLDL 123 (279)
Q Consensus 79 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~----------------------------------~~~~L~~L~l 123 (279)
......+...+..+++|++|++++|.+..++ ..+. .+++|+.|++
T Consensus 140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence 7544444444788889999999988875442 2222 3367888888
Q ss_pred eCCcccccCCC-------------------------------CCcCcchhh--ccCcccceeccCC-----CCccccCCC
Q 044855 124 SHNKLVGNFPI-------------------------------CGKMDDGLR--SSTSLEGLDISGN-----IPNWIGNIS 165 (279)
Q Consensus 124 ~~~~~~~~~~~-------------------------------~~~~~~~~~--~~~~L~~l~l~~~-----~~~~~~~~~ 165 (279)
++|.+.+..+. .......+. ..++|+.++++++ .+..++.++
T Consensus 220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 88765431110 000001111 2357899999887 466788899
Q ss_pred CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855 166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLR 235 (279)
Q Consensus 166 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (279)
+|+.|++++|.+++..+..+..+++|+.|++++|.+.. +|+.|++++|++.+..+..+..+++|+.|+++
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 99999999999999888899999999999999998754 89999999999988888899999999999999
Q ss_pred CCcccccCChhhhcccCCcEEEccCCEeeeecCc
Q 044855 236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPS 269 (279)
Q Consensus 236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 269 (279)
+|++++..+..+..+++|+.|++++|++++..|.
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999977777888999999999999999988874
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=224.17 Aligned_cols=258 Identities=22% Similarity=0.258 Sum_probs=223.3
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
+|++|.+.+..|.+|.++++|++|+|++|.++...+..|.++++|++|++++|.+. ......+..+++|++|++++|.
T Consensus 62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~- 139 (477)
T 2id5_A 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND- 139 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTT-
T ss_pred ECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCc-
Confidence 57899999888999999999999999999999666667899999999999999987 4455678999999999999886
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC---
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN--- 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~--- 156 (279)
...+....+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.... ...+..+++|+.|+++++
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~------~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR------DYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC------TTCSCSCTTCCEEEEECCTTC
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC------hhhcccCcccceeeCCCCccc
Confidence 445566778999999999999999988876 5778999999999999887433 346778899999999976
Q ss_pred --CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhh
Q 044855 157 --IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQIN 224 (279)
Q Consensus 157 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~ 224 (279)
++.......+|+.|++++|.++...+..+..+++|+.|++++|.+.. +|+.|++++|++.+..+..+.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 33334445689999999999988555678999999999999998754 899999999999988888999
Q ss_pred cCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS 266 (279)
Q Consensus 225 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (279)
.+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999999977777888999999999999999854
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.2e-31 Score=236.09 Aligned_cols=265 Identities=19% Similarity=0.224 Sum_probs=174.9
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCc-ccc-cCCccccCC------CcCcEEeccCcccCcccch-hhhccccccee
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQ-LSG-NFPSTLTNF------TSLEYLDLSSINFQGTFSI-NSLANHSKLEV 72 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~ 72 (279)
|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+. .++. ..+..+++|++
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence 45666666677777777777777777776 665 566655554 67777777777666 3332 25677777777
Q ss_pred eeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCC-ccEEEeeCCcccccCCCCCcCcchhhc--cCccc
Q 044855 73 LLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDH-LKFLDLSHNKLVGNFPICGKMDDGLRS--STSLE 149 (279)
Q Consensus 73 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~~L~ 149 (279)
|++++|.....++ .+..+++|++|++++|.+..+|..+..+++ |+.|++++|.+. .. +..+.. +++|+
T Consensus 335 L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l------p~~~~~~~l~~L~ 405 (636)
T 4eco_A 335 LECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI------PNIFDAKSVSVMS 405 (636)
T ss_dssp EECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC------CSCCCTTCSSCEE
T ss_pred EeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-cc------chhhhhcccCccC
Confidence 7777776544555 566777777788877777777777777777 888888887765 22 223333 23677
Q ss_pred ceeccCC-----CCcccc-------CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc--------------
Q 044855 150 GLDISGN-----IPNWIG-------NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------------- 203 (279)
Q Consensus 150 ~l~l~~~-----~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------------- 203 (279)
.++++++ .|..+. .+++|+.|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 7777665 234444 55577777777777765333345556777777777776542
Q ss_pred ---cceEEEeecCccCCCCchhhh--cCcCCcEEEccCCcccccCChhhhcccCCcEEEc------cCCEeeeecCcccc
Q 044855 204 ---KLITLDLRDNKFFGRIPYQIN--ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDL------SNNIFSGSIPSCLG 272 (279)
Q Consensus 204 ---~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~l~~~~p~~~~ 272 (279)
+|+.|++++|++. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|+.++
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 4677777777775 4555554 67777777777777774 6666777777777777 45666667777777
Q ss_pred CCcccc
Q 044855 273 NVSFWR 278 (279)
Q Consensus 273 ~~~~l~ 278 (279)
.++.|+
T Consensus 564 ~l~~L~ 569 (636)
T 4eco_A 564 LCPSLT 569 (636)
T ss_dssp GCSSCC
T ss_pred cCCCCC
Confidence 766665
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.5e-30 Score=229.61 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=90.3
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. ...+..+.++++|++|++++|..
T Consensus 38 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCC
T ss_pred ECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcCCcccCCEEEccCCcc
Confidence 46777777777777888888888888888777666777778888888888888776 34445677777777777777753
Q ss_pred cccccCCCCCCCCceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVG 130 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 130 (279)
...+...+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+
T Consensus 117 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 117 -ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp -CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred -ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 3444445667777777777777764 356666777777777777666543
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.3e-30 Score=228.84 Aligned_cols=125 Identities=19% Similarity=0.205 Sum_probs=77.1
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..|.+|+++++|++|++++|.+.+..|..|.++++|++|++++|.+. ......+..+++|++|++++|..
T Consensus 39 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp ECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCC
T ss_pred EccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCc
Confidence 46777777777777788888888888887777666777777777777777777776 33345566667777777766642
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNK 127 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 127 (279)
..+....+..+++|++|++++|.+..++ ..+..+++|+.|++++|.
T Consensus 118 -~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 118 -SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp -SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred -ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence 2332333455555555555555554331 122224444444444443
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.1e-30 Score=230.05 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=39.7
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCC
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 78 (279)
|++|.+++..|.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. ..+...+.++++|++|++++|
T Consensus 63 Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 63 LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSS
T ss_pred CCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCC
Confidence 4555555555555666666666666666655444555555555555555555554 222222344444444444443
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=9.5e-31 Score=233.04 Aligned_cols=265 Identities=20% Similarity=0.281 Sum_probs=224.6
Q ss_pred CCCCCcCcCC-----------------CCcccc--CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCc-cc
Q 044855 1 DLSSNNFEGH-----------------LPQCLN--HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQG-TF 59 (279)
Q Consensus 1 ~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~ 59 (279)
||++|.+++. +|..++ ++++|++|++++|.+.+.+|..|.++++|++|++++|. +++ .+
T Consensus 212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l 291 (636)
T 4eco_A 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291 (636)
T ss_dssp EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHH
T ss_pred ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccc
Confidence 4678888875 899998 99999999999999999999999999999999999998 775 33
Q ss_pred chhhhcc------cccceeeeecCCcccccccC-CCCCCCCceeEEEecCCcCc-ccChhhhcCCCccEEEeeCCccccc
Q 044855 60 SINSLAN------HSKLEVLLLSSGSNMLQVKT-ESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGN 131 (279)
Q Consensus 60 ~~~~~~~------~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~ 131 (279)
+ ..+.. +++|++|++++|... .++. ..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+.
T Consensus 292 p-~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-- 366 (636)
T 4eco_A 292 K-DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-- 366 (636)
T ss_dssp H-HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--
T ss_pred h-HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--
Confidence 3 44444 499999999999755 5543 26789999999999999997 899 8888999999999999987
Q ss_pred CCCCCcCcchhhccCc-ccceeccCC----CCccccCCC--CCcEEEccccEeeeecccccc-------CCCCccEEecc
Q 044855 132 FPICGKMDDGLRSSTS-LEGLDISGN----IPNWIGNIS--TLRVLLMSKNYLEANIPVQLN-------HLKSLELIDIF 197 (279)
Q Consensus 132 ~~~~~~~~~~~~~~~~-L~~l~l~~~----~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~-------~~~~L~~l~l~ 197 (279)
.++..+..+++ |++|+++++ +|..+.... +|+.|++++|.+++..|..+. .+++|+.|+++
T Consensus 367 -----~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 367 -----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp -----ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred -----cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 44567888999 999999987 555555544 899999999999887777777 78899999999
Q ss_pred CCcCcc----------cceEEEeecCccCCCCchh-hhc-------CcCCcEEEccCCcccccCChhhh--cccCCcEEE
Q 044855 198 ENSLSS----------KLITLDLRDNKFFGRIPYQ-INE-------LSNLHVLLLRGNSLQGHIPNELC--QLAKLRIMD 257 (279)
Q Consensus 198 ~~~~~~----------~L~~L~l~~~~~~~~~~~~-~~~-------~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~ 257 (279)
+|.+.. +|+.|++++|++. .+|.. +.. +++|+.|++++|+++ .+|..+. .+++|+.|+
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGID 519 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEE
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEE
Confidence 998764 7999999999997 45443 332 239999999999999 7888876 899999999
Q ss_pred ccCCEeeeecCccccCCcccc
Q 044855 258 LSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 258 l~~n~l~~~~p~~~~~~~~l~ 278 (279)
+++|.+++ +|..+..++.|+
T Consensus 520 Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 520 LSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp CCSSCCSS-CCCGGGGCSSCC
T ss_pred CCCCCCCC-cChhhhcCCCCC
Confidence 99999996 999999988886
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.3e-29 Score=208.69 Aligned_cols=253 Identities=23% Similarity=0.309 Sum_probs=164.0
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc--
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS-- 79 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-- 79 (279)
++++.+... + ++..+++|++|++++|.+++ ++. +..+++|++|++++|.+.. . ..+..+++|++|++++|.
T Consensus 51 l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~--~~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 51 VAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I--SALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp CCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCSEEECTTSCCC
T ss_pred EeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c--hHHcCCCcCCEEECcCCccc
Confidence 344444422 2 25555566666666555552 222 5555555555555555442 1 234455555555555443
Q ss_pred --------------------ccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCc
Q 044855 80 --------------------NMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMD 139 (279)
Q Consensus 80 --------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 139 (279)
.....+ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+.+ ..
T Consensus 124 ~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~ 193 (347)
T 4fmz_A 124 DISPLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-------IS 193 (347)
T ss_dssp CCGGGTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC-------CG
T ss_pred CchhhccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc-------cc
Confidence 222211 13445555555555555544433 4455666666666655431 11
Q ss_pred chhhccCcccceeccCCCC---ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc--------cceEE
Q 044855 140 DGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------KLITL 208 (279)
Q Consensus 140 ~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--------~L~~L 208 (279)
.+..+++|+.++++++-. ..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+.. +|+.|
T Consensus 194 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 270 (347)
T 4fmz_A 194 -PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKML 270 (347)
T ss_dssp -GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred -cccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEE
Confidence 256677777777776622 225677889999999998877433 7888999999999887764 89999
Q ss_pred EeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 209 DLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
++++|++.+. ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..| +..++.|+
T Consensus 271 ~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 271 NVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred EccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 9999988764 457889999999999999998888889999999999999999986555 67777665
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.1e-30 Score=211.81 Aligned_cols=234 Identities=26% Similarity=0.378 Sum_probs=157.8
Q ss_pred CCccEEEeeCCcccc--cCCccccCCCcCcEEeccC-cccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855 19 THLKVLDIFNNQLSG--NFPSTLTNFTSLEYLDLSS-INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL 95 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 95 (279)
.+++.|+++++.+.+ .+|..|.++++|++|++++ |.+.+.. +..+..+++|++|++++|..... .+..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence 567778888887776 6777777788888888874 6665333 35567777888888877754323 33456777788
Q ss_pred eEEEecCCcCc-ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccC-cccceeccCC-----CCccccCCCCCc
Q 044855 96 KVLKLSDCQLH-VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSST-SLEGLDISGN-----IPNWIGNISTLR 168 (279)
Q Consensus 96 ~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~-----~~~~~~~~~~L~ 168 (279)
++|++++|.+. .+|..+..+++|++|++++|.+.+. .+..+..+. .|++++++++ .+..+..++ |+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc------CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 88888888775 6677777778888888888776532 335556665 6777777765 455666666 88
Q ss_pred EEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855 169 VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239 (279)
Q Consensus 169 ~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (279)
.|++++|.+++..+..+..+++|+.|++++|.+.. +|++|++++|++.+.+|..+..+++|+.|++++|++
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 88888888887777777888888877777776542 455555555555555555555666666666666666
Q ss_pred cccCChhhhcccCCcEEEccCCE
Q 044855 240 QGHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
++.+|.. ..+++|+.+++++|+
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCCCC-ccccccChHHhcCCC
Confidence 5555554 455566666666665
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-30 Score=217.41 Aligned_cols=248 Identities=20% Similarity=0.238 Sum_probs=156.0
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.++..++..++.+++|++|++++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|++|++++|. .
T Consensus 52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l 129 (390)
T 3o6n_A 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-L 129 (390)
T ss_dssp EESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred ecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCc-c
Confidence 3456666555566777888888888888877666667778888888888888776 4444567777888888887775 3
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW 160 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 160 (279)
..++...+..+++|++|++++|.+..++. .+..+++|+.|++++|.+... .+..+++|+.++++++....
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------CGGGCTTCSEEECCSSCCSE
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------ccccccccceeecccccccc
Confidence 45666666778888888888887766643 466778888888888776532 23344555555555543333
Q ss_pred ccCCC---------------------CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEE
Q 044855 161 IGNIS---------------------TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLD 209 (279)
Q Consensus 161 ~~~~~---------------------~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~ 209 (279)
+...+ +|+.|++++|.+++. ..+..+++|+.|++++|.+.. +|+.|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 33333 455555555544431 245555666666666665432 566666
Q ss_pred eecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855 210 LRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
+++|++.+ ++..+..+++|+.|++++|+++ .++..+..+++|+.|++++|.++
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 66666543 3333445566666666666665 44555556666666666666665
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.8e-29 Score=225.06 Aligned_cols=276 Identities=23% Similarity=0.224 Sum_probs=210.0
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.|+...+.+|+++++|++|+|++|++++..+.+|.++++|++|++++|.+. ..+...+.++++|++|++++|.
T Consensus 58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~- 135 (635)
T 4g8a_A 58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN- 135 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSC-
T ss_pred EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCc-
Confidence 68999999888899999999999999999999777788999999999999999987 5666788999999999999886
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCcccccCCCC-----------------------
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLVGNFPIC----------------------- 135 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------- 135 (279)
+..++...|+.+++|++|++++|.+.. +|..+..+++|++|++++|.+.+..+..
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 456677778999999999999999864 4677888999999999988764321100
Q ss_pred --------------------------------------------------------------------------------
Q 044855 136 -------------------------------------------------------------------------------- 135 (279)
Q Consensus 136 -------------------------------------------------------------------------------- 135 (279)
T Consensus 216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence
Q ss_pred -----------------------------------------------------------------CcCcchhhccCcccc
Q 044855 136 -----------------------------------------------------------------GKMDDGLRSSTSLEG 150 (279)
Q Consensus 136 -----------------------------------------------------------------~~~~~~~~~~~~L~~ 150 (279)
.........+++|+.
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~ 375 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCE
T ss_pred cchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccccc
Confidence 000000001223333
Q ss_pred eeccCCC------------------------------C-------------------------ccccCCCCCcEEEcccc
Q 044855 151 LDISGNI------------------------------P-------------------------NWIGNISTLRVLLMSKN 175 (279)
Q Consensus 151 l~l~~~~------------------------------~-------------------------~~~~~~~~L~~L~l~~~ 175 (279)
++++++. + ..+..+++++.++++.|
T Consensus 376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred chhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 3333210 0 11223344555555555
Q ss_pred EeeeeccccccCCCCccEEeccCCcCcc-----------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855 176 YLEANIPVQLNHLKSLELIDIFENSLSS-----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 244 (279)
Q Consensus 176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~-----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 244 (279)
.+....+..+..++.++.+++++|.... +|+.|++++|++.+..|..|.++++|+.|++++|++++..+
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 5555556666777888888888775321 78999999999988888889999999999999999998888
Q ss_pred hhhhcccCCcEEEccCCEeeeecCccccCC-cccc
Q 044855 245 NELCQLAKLRIMDLSNNIFSGSIPSCLGNV-SFWR 278 (279)
Q Consensus 245 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~l~ 278 (279)
..+..+++|+.|++++|++++..|+.+..+ +.|+
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 889999999999999999998888888776 4554
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=226.25 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=95.2
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..+.+|+.+++|++|++++|.+++..+..|.++++|++|++++|.+. ..+...+..+++|++|++++|.
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~- 111 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN- 111 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSC-
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccc-
Confidence 57788888777888888888888888888888766777888888888888888876 4445667778888888887775
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCccc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~ 129 (279)
...++...+..+++|++|++++|.+.. +|..+..+++|+.|++++|.+.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 334444446777777778777777754 5667777777777777776543
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1e-29 Score=231.15 Aligned_cols=264 Identities=21% Similarity=0.236 Sum_probs=153.7
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCc-ccc-cCCccccCCC-------cCcEEeccCcccCcccch-hhhcccccce
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQ-LSG-NFPSTLTNFT-------SLEYLDLSSINFQGTFSI-NSLANHSKLE 71 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~-~~~~~~~~L~ 71 (279)
|++|.+.+.+|..|.++++|++|++++|+ +++ .+|..+..++ +|++|++++|.+. .++. ..+..+++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 45666666666667777777777777766 665 5555444433 6777777777665 3332 2567777777
Q ss_pred eeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCC-ccEEEeeCCcccccCCCCCcCcchhhcc--Ccc
Q 044855 72 VLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDH-LKFLDLSHNKLVGNFPICGKMDDGLRSS--TSL 148 (279)
Q Consensus 72 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~L 148 (279)
.|++++|... .++ .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.+. ..| ..+... ++|
T Consensus 577 ~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp------~~~~~~~~~~L 646 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP------NIFNAKSVYVM 646 (876)
T ss_dssp EEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC------SCCCTTCSSCE
T ss_pred EEECCCCCcc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc------hhhhccccCCC
Confidence 7777777644 444 567777788888887777777777777777 888888777765 222 222222 225
Q ss_pred cceeccCCC-----Cc---ccc--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------------
Q 044855 149 EGLDISGNI-----PN---WIG--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------------- 203 (279)
Q Consensus 149 ~~l~l~~~~-----~~---~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--------------- 203 (279)
+.|++++|- +. .+. .+++|+.|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 555555441 11 111 12355566666655554222223355666666666555431
Q ss_pred --cceEEEeecCccCCCCchhhh--cCcCCcEEEccCCcccccCChhhhcccCCcEEEccC------CEeeeecCccccC
Q 044855 204 --KLITLDLRDNKFFGRIPYQIN--ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSN------NIFSGSIPSCLGN 273 (279)
Q Consensus 204 --~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~p~~~~~ 273 (279)
+|+.|++++|++. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++ |.+.+.+|..++.
T Consensus 727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 4556666666654 4454444 55666666666666653 455555666666666644 5555566666655
Q ss_pred Ccccc
Q 044855 274 VSFWR 278 (279)
Q Consensus 274 ~~~l~ 278 (279)
++.|+
T Consensus 805 L~~L~ 809 (876)
T 4ecn_A 805 CPSLI 809 (876)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 55554
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-29 Score=224.29 Aligned_cols=250 Identities=20% Similarity=0.217 Sum_probs=165.9
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.+...++..|+.+++|++|++++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|++|++++|. +
T Consensus 58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l 135 (597)
T 3oja_B 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND-L 135 (597)
T ss_dssp ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCC-C
Confidence 4566677666677888888999999888888777778888899999999988887 4555667888889999988885 4
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW 160 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 160 (279)
..++...|..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+. .+..+++|+.++++++....
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------ChhhhhhhhhhhcccCcccc
Confidence 46666667888889999998888866654 577788899999988877632 23445566666666554444
Q ss_pred ccCCCCCcEEEccccEeeeec-------------------cccccCCCCccEEeccCCcCcc----------cceEEEee
Q 044855 161 IGNISTLRVLLMSKNYLEANI-------------------PVQLNHLKSLELIDIFENSLSS----------KLITLDLR 211 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~~l~~~~-------------------~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~ 211 (279)
+...++|+.|++++|.+.... +..+..+++|+.|++++|.+.. +|+.|+++
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 444444555554444443321 2334555566666666555432 55566666
Q ss_pred cCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855 212 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
+|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp TSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 665543 3334444566666666666665 44555556666666666666665
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=6.5e-29 Score=227.94 Aligned_cols=257 Identities=22% Similarity=0.214 Sum_probs=171.6
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccC-CccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNF-PSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
||++|.++...+.+|+++++|++|++++|...+.+ |..|.++++|++|++++|.+. ...+..+.++++|++|++++|.
T Consensus 30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCC
T ss_pred ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCC
Confidence 57889999888899999999999999998554444 778999999999999999887 4555788899999999999887
Q ss_pred ccccccC-CCCCCCCceeEEEecCCcCcccC--hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhcc--Cc-------
Q 044855 80 NMLQVKT-ESWHPTSQLKVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSS--TS------- 147 (279)
Q Consensus 80 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~------- 147 (279)
.....+. ..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+.+..+ ..+..+ ++
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~------~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE------HELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS------GGGHHHHHCSSCCCEEC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH------HHcccccCCccceEECC
Confidence 5443332 34788999999999999886653 467889999999999988764322 222222 33
Q ss_pred -----------------------ccceeccCC-----CCccc------------------------------------cC
Q 044855 148 -----------------------LEGLDISGN-----IPNWI------------------------------------GN 163 (279)
Q Consensus 148 -----------------------L~~l~l~~~-----~~~~~------------------------------------~~ 163 (279)
|+.++++++ .+..+ ..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 455555443 01000 00
Q ss_pred --CCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855 164 --ISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHV 231 (279)
Q Consensus 164 --~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 231 (279)
.++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|+.|++++|.+.+..+..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 1345556666555555555555556666666666555432 5566666666665555555556666666
Q ss_pred EEccCCcccccCChhhhcccCCcEEEccCCEee
Q 044855 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 666666665444555555666666666666655
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.9e-29 Score=203.23 Aligned_cols=225 Identities=29% Similarity=0.416 Sum_probs=195.7
Q ss_pred CcCcEEeccCcccCc--ccchhhhcccccceeeeecC-CcccccccCCCCCCCCceeEEEecCCcCc-ccChhhhcCCCc
Q 044855 43 TSLEYLDLSSINFQG--TFSINSLANHSKLEVLLLSS-GSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIPSFLLQQDHL 118 (279)
Q Consensus 43 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L 118 (279)
.++++|++++|.+.+ .. +..+..+++|++|++++ +.... ..+..+..+++|++|++++|.+. .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 689999999999985 33 36788999999999995 55433 34456789999999999999996 888899999999
Q ss_pred cEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCC-CCcEEEccccEeeeeccccccCCCCcc
Q 044855 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNIS-TLRVLLMSKNYLEANIPVQLNHLKSLE 192 (279)
Q Consensus 119 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~-~L~~L~l~~~~l~~~~~~~l~~~~~L~ 192 (279)
++|++++|.+.+ ..+..+..+++|++|+++++ +|..+..++ .|+.|++++|.+++..|..+..++ |+
T Consensus 128 ~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 128 VTLDFSYNALSG------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp CEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CEEeCCCCccCC------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 999999999874 34577889999999999987 566778887 999999999999988898898887 99
Q ss_pred EEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855 193 LIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 193 ~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
.|++++|.+.. +|+.|++++|++.+..+. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 99999998753 899999999999876665 7788999999999999999999999999999999999999
Q ss_pred eeeecCccccCCcccc
Q 044855 263 FSGSIPSCLGNVSFWR 278 (279)
Q Consensus 263 l~~~~p~~~~~~~~l~ 278 (279)
+++.+|+. +.++.|+
T Consensus 280 l~~~ip~~-~~l~~L~ 294 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFD 294 (313)
T ss_dssp EEEECCCS-TTGGGSC
T ss_pred ccccCCCC-ccccccC
Confidence 99999986 7776664
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.9e-29 Score=216.99 Aligned_cols=101 Identities=28% Similarity=0.229 Sum_probs=55.2
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..|.+|+++++|++|++++|++++..|..|.++++|++|++++|.+. .++.. .+++|++|++++|..
T Consensus 27 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAF 102 (520)
T ss_dssp ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCC
T ss_pred ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCcc
Confidence 35556666555556666666666666666666555556666666666666666555 22222 455666666655543
Q ss_pred cccccCCCCCCCCceeEEEecCCcC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQL 105 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~ 105 (279)
.....+..++.+++|++|++++|.+
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred ccccchhhhccCCcceEEEecCccc
Confidence 2211223445555555555555544
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=221.02 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+.+..+.+|+++++|++|++++|.+++..+..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus 58 ~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCcc
Confidence 57889999888889999999999999999998777788999999999999999887 34444578888999999988864
Q ss_pred cccccCCCCCCCCceeEEEecCCcCccc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVI 108 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 108 (279)
.....+..+..+++|++|++++|.+..+
T Consensus 137 ~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ceecChhhhcccCCCCEEeCcCCcccee
Confidence 3322245577788888888888776443
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.2e-28 Score=204.93 Aligned_cols=258 Identities=21% Similarity=0.189 Sum_probs=208.9
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
+|++|.+....+.+|+.+++|++|++++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCcc
Confidence 57899999888889999999999999999999877888999999999999999987 55556678999999999998864
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCC--C--------cCcchhhccCcccc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC--G--------KMDDGLRSSTSLEG 150 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~--------~~~~~~~~~~~L~~ 150 (279)
..++...+..+++|++|++++|.++.++ +..+++|+.+++++|.+....... . .........++|+.
T Consensus 154 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 230 (390)
T 3o6n_A 154 -ERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230 (390)
T ss_dssp -CBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred -CccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence 4566667889999999999999987764 445677777777766554311100 0 00001122357888
Q ss_pred eeccCC---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCC
Q 044855 151 LDISGN---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGR 218 (279)
Q Consensus 151 l~l~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~ 218 (279)
|+++++ -...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.. +|+.|++++|++. .
T Consensus 231 L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~ 309 (390)
T 3o6n_A 231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-H 309 (390)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-C
T ss_pred EECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-e
Confidence 888877 23567788999999999999999888899999999999999998754 8999999999986 5
Q ss_pred CchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855 219 IPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS 266 (279)
Q Consensus 219 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (279)
++..+..+++|+.|++++|++++. + +..+++|+.|++++|+++..
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 677788899999999999999854 3 66788999999999999854
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.4e-28 Score=201.40 Aligned_cols=264 Identities=20% Similarity=0.215 Sum_probs=208.4
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|..
T Consensus 40 ~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l- 114 (332)
T 2ft3_A 40 CSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL- 114 (332)
T ss_dssp CCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCC-
T ss_pred CCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcC-
Confidence 5667777 455544 378999999999998777778999999999999999987 44457788999999999998864
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW 160 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 160 (279)
..++...+ ++|++|++++|.+..++. .+..+++|+.|++++|.+.... ..+..+..+ +|++++++++-...
T Consensus 115 ~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 115 VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG----FEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG----SCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC----CCcccccCC-ccCEEECcCCCCCc
Confidence 35554433 789999999999988876 4678999999999999875321 223344445 89999998873222
Q ss_pred cc--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcC
Q 044855 161 IG--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSN 228 (279)
Q Consensus 161 ~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~ 228 (279)
+. ..++|+.|++++|.++...+..+..+++|+.|++++|.+.. +|+.|++++|++. .+|..+..+++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 21 12689999999999988777889999999999999998754 8999999999986 67878889999
Q ss_pred CcEEEccCCcccccCChhhhc------ccCCcEEEccCCEee--eecCccccCCccccC
Q 044855 229 LHVLLLRGNSLQGHIPNELCQ------LAKLRIMDLSNNIFS--GSIPSCLGNVSFWRE 279 (279)
Q Consensus 229 L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~p~~~~~~~~l~~ 279 (279)
|+.|++++|++++..+..+.. .+.++.|++++|++. +..|..|..++.|+.
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence 999999999999777766655 367899999999987 667778888887763
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.4e-29 Score=227.68 Aligned_cols=265 Identities=19% Similarity=0.234 Sum_probs=218.1
Q ss_pred CCCCCcCcC-----------------CCCcccc--CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCc-cc
Q 044855 1 DLSSNNFEG-----------------HLPQCLN--HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQG-TF 59 (279)
Q Consensus 1 ~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~ 59 (279)
||++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|.++++|++|++++|. +++ .+
T Consensus 454 ~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i 533 (876)
T 4ecn_A 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533 (876)
T ss_dssp EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH
T ss_pred ECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccc
Confidence 467788887 3888877 99999999999999999999999999999999999998 765 33
Q ss_pred chhhhc-------ccccceeeeecCCcccccccC-CCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCccccc
Q 044855 60 SINSLA-------NHSKLEVLLLSSGSNMLQVKT-ESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGN 131 (279)
Q Consensus 60 ~~~~~~-------~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 131 (279)
+ ..+. .+++|++|++++|... .++. ..+..+++|++|++++|.+..+| .+..+++|+.|++++|.+.
T Consensus 534 P-~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-- 608 (876)
T 4ecn_A 534 K-ADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-- 608 (876)
T ss_dssp H-HHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--
T ss_pred h-HHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--
Confidence 3 3333 4559999999999755 5543 26789999999999999999899 8888999999999999887
Q ss_pred CCCCCcCcchhhccCc-ccceeccCC----CCccccCCC--CCcEEEccccEeeeecccc---cc--CCCCccEEeccCC
Q 044855 132 FPICGKMDDGLRSSTS-LEGLDISGN----IPNWIGNIS--TLRVLLMSKNYLEANIPVQ---LN--HLKSLELIDIFEN 199 (279)
Q Consensus 132 ~~~~~~~~~~~~~~~~-L~~l~l~~~----~~~~~~~~~--~L~~L~l~~~~l~~~~~~~---l~--~~~~L~~l~l~~~ 199 (279)
.++..+..+++ |+.|++++| +|..+...+ +|+.|++++|.+.+..|.. +. .+++|+.|++++|
T Consensus 609 -----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 609 -----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp -----CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred -----cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 34466888888 999999988 455555554 4999999999987744422 22 4458999999999
Q ss_pred cCcc----------cceEEEeecCccCCCCchhhh--------cCcCCcEEEccCCcccccCChhhh--cccCCcEEEcc
Q 044855 200 SLSS----------KLITLDLRDNKFFGRIPYQIN--------ELSNLHVLLLRGNSLQGHIPNELC--QLAKLRIMDLS 259 (279)
Q Consensus 200 ~~~~----------~L~~L~l~~~~~~~~~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~ 259 (279)
.+.. +|+.|++++|++. .+|..+. ++++|+.|++++|+++ .+|..+. .+++|+.|+++
T Consensus 684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 684 EIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp CCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECC
T ss_pred cCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeC
Confidence 8764 8999999999997 4554432 2349999999999999 7888887 89999999999
Q ss_pred CCEeeeecCccccCCcccc
Q 044855 260 NNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 260 ~n~l~~~~p~~~~~~~~l~ 278 (279)
+|.+++ +|..+..++.|+
T Consensus 762 ~N~L~~-lp~~l~~L~~L~ 779 (876)
T 4ecn_A 762 YNCFSS-FPTQPLNSSQLK 779 (876)
T ss_dssp SSCCSS-CCCGGGGCTTCC
T ss_pred CCCCCc-cchhhhcCCCCC
Confidence 999996 899999988886
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=4e-28 Score=218.21 Aligned_cols=275 Identities=20% Similarity=0.240 Sum_probs=141.3
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+.+..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCcc
Confidence 35556666555555666666666666666655555555555556666666555554 33333445555555555554432
Q ss_pred cccccCCCCCCCCceeEEEec------------------------CCcCcccChh---hhcCCCccEEEeeCCcccccCC
Q 044855 81 MLQVKTESWHPTSQLKVLKLS------------------------DCQLHVIPSF---LLQQDHLKFLDLSHNKLVGNFP 133 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~------------------------~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~ 133 (279)
..++...+..+++|++|+++ +|.++.++.. ...+++|+.|++++|.+.+..+
T Consensus 110 -~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 110 -QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp -CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred -CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 23333334444444444444 4444333321 1123455555555554433222
Q ss_pred CC---------------------------------------------CcCcchhhccC--cccceeccCC-----CCccc
Q 044855 134 IC---------------------------------------------GKMDDGLRSST--SLEGLDISGN-----IPNWI 161 (279)
Q Consensus 134 ~~---------------------------------------------~~~~~~~~~~~--~L~~l~l~~~-----~~~~~ 161 (279)
.. ...+..+..+. +|+.|+++++ .+..+
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc
Confidence 10 00011222232 3677777665 23456
Q ss_pred cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCc-------------------ccceEEEeecCccCCCCchh
Q 044855 162 GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLS-------------------SKLITLDLRDNKFFGRIPYQ 222 (279)
Q Consensus 162 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-------------------~~L~~L~l~~~~~~~~~~~~ 222 (279)
+.+++|+.|++++|.+.+..+..+..+++|+.++++++... .+|+.|++++|.+.+..+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 66777777777777777666666666666666666543211 15666666666666555555
Q ss_pred hhcCcCCcEEEccCC----------------------------cccccCChhhhcccCCcEEEccCCEeeeecC-ccccC
Q 044855 223 INELSNLHVLLLRGN----------------------------SLQGHIPNELCQLAKLRIMDLSNNIFSGSIP-SCLGN 273 (279)
Q Consensus 223 ~~~~~~L~~L~l~~n----------------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~ 273 (279)
+..+++|+.|++++| ++++..+..+..+++|+.|++++|.+++.+| ..|..
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 555555544444433 3333344445555556666666666555544 34444
Q ss_pred Cccc
Q 044855 274 VSFW 277 (279)
Q Consensus 274 ~~~l 277 (279)
++.|
T Consensus 429 l~~L 432 (680)
T 1ziw_A 429 LENI 432 (680)
T ss_dssp CTTC
T ss_pred cccc
Confidence 4444
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.8e-28 Score=220.44 Aligned_cols=271 Identities=22% Similarity=0.237 Sum_probs=154.7
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcc--------cchhhhccccccee
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGT--------FSINSLANHSKLEV 72 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~~~~~L~~ 72 (279)
||++|.+.+..+.+|+.+++|++|++++|.+++..+..|.++++|++|++++|...+. +....+..+++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 4566777766667777777777777777777655555555555555555544321110 00112333444444
Q ss_pred eeecCCcccccccCCCCCCCCceeEEE----------------------------ecCCcCccc-ChhhhcCCCccEEEe
Q 044855 73 LLLSSGSNMLQVKTESWHPTSQLKVLK----------------------------LSDCQLHVI-PSFLLQQDHLKFLDL 123 (279)
Q Consensus 73 L~l~~~~~~~~~~~~~~~~~~~L~~L~----------------------------l~~~~~~~~-~~~~~~~~~L~~L~l 123 (279)
|++++|.. .......+..+++|++|+ +++|.+..+ +..+..+++|+.|++
T Consensus 334 L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 334 LNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EECCSCCB-CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCcc-CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 44444331 112222233333333333 333333222 223444555555555
Q ss_pred eCCcccccCCC-------------------CCcCcchhhccCcccceeccCC-------CCccccCCCCCcEEEccccEe
Q 044855 124 SHNKLVGNFPI-------------------CGKMDDGLRSSTSLEGLDISGN-------IPNWIGNISTLRVLLMSKNYL 177 (279)
Q Consensus 124 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~L~~l~l~~~-------~~~~~~~~~~L~~L~l~~~~l 177 (279)
++|.+.+..+. ....+..+..+++|+.++++++ .|..+..+++|+.|++++|.+
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 55554322110 0011233444556666666543 345566777788888888877
Q ss_pred eeeccccccCCCCccEEeccCCcCc------------------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855 178 EANIPVQLNHLKSLELIDIFENSLS------------------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239 (279)
Q Consensus 178 ~~~~~~~l~~~~~L~~l~l~~~~~~------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (279)
+...+..+..+++|+.|++++|.+. .+|+.|++++|++....+..|..+++|+.|++++|++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 7766666777888888888777653 2677888888877654445677778888888888888
Q ss_pred cccCChhhhcccCCcEEEccCCEeeeecCcccc
Q 044855 240 QGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLG 272 (279)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 272 (279)
++..+..+..+++|+.|++++|.+++..|..+.
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 765666667778888888888887765555444
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=7e-29 Score=217.86 Aligned_cols=130 Identities=26% Similarity=0.318 Sum_probs=81.9
Q ss_pred hccCcccceeccCCCC--------ccccCCCCCcEEEccccEeeeecc--ccccCCCCccEEeccCCcCcc---------
Q 044855 143 RSSTSLEGLDISGNIP--------NWIGNISTLRVLLMSKNYLEANIP--VQLNHLKSLELIDIFENSLSS--------- 203 (279)
Q Consensus 143 ~~~~~L~~l~l~~~~~--------~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~l~l~~~~~~~--------- 203 (279)
..+++|++|+++++-. ..++.+++|+.|++++|.++...+ ..+..+++|+.|++++|.+..
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 3567788888877621 124455666666666666544211 234455555555555554332
Q ss_pred ---------------------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855 204 ---------------------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 204 ---------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
+|+.|++++|++++. +..+++|+.|++++|+++ .+|. ...+++|+.|++++|+
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQ 484 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSC
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCc
Confidence 444555555544332 236788889999998888 5554 3568889999999999
Q ss_pred eeeecCccccCCcccc
Q 044855 263 FSGSIPSCLGNVSFWR 278 (279)
Q Consensus 263 l~~~~p~~~~~~~~l~ 278 (279)
+++..|+.|..++.|+
T Consensus 485 l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp CCCCCTTGGGGCTTCC
T ss_pred cCCcCHHHHhcCcccC
Confidence 9877777788887775
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.6e-27 Score=196.29 Aligned_cols=264 Identities=20% Similarity=0.236 Sum_probs=207.2
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|..
T Consensus 38 ~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l- 112 (330)
T 1xku_A 38 CSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL- 112 (330)
T ss_dssp CTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCC-
T ss_pred ecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcC-
Confidence 4556666 4454443 68999999999998766668999999999999999887 44456788899999999988864
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW 160 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 160 (279)
..++...+ ++|++|++++|.+..++. .+..+++|+.|++++|.+.... ..+..+..+++|++++++++-...
T Consensus 113 ~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 113 KELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----IENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----BCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC----cChhhccCCCCcCEEECCCCcccc
Confidence 34444332 789999999999987765 5678899999999998875321 334567889999999999873222
Q ss_pred cc--CCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcC
Q 044855 161 IG--NISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSN 228 (279)
Q Consensus 161 ~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~ 228 (279)
+. ..++|+.|++++|.++...+..+..+++|+.|++++|.+.. +|+.|++++|++. .+|..+..+++
T Consensus 186 l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 21 13789999999999988778889999999999999998753 8999999999986 67778889999
Q ss_pred CcEEEccCCcccccCChhhhc------ccCCcEEEccCCEeee--ecCccccCCcccc
Q 044855 229 LHVLLLRGNSLQGHIPNELCQ------LAKLRIMDLSNNIFSG--SIPSCLGNVSFWR 278 (279)
Q Consensus 229 L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~~--~~p~~~~~~~~l~ 278 (279)
|+.|++++|++++..+..++. .+.++.|++++|++.. ..|..|..++.|+
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred cCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence 999999999999776666654 3778999999999853 4556777777665
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.6e-28 Score=199.53 Aligned_cols=248 Identities=19% Similarity=0.211 Sum_probs=204.3
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..+.+|+++++|++|++++|.+++..|..|..+++|++|++++|.+. ..+... .++|++|++++|.
T Consensus 58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~- 132 (330)
T 1xku_A 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENE- 132 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEECCSSC-
T ss_pred ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEEECCCCc-
Confidence 57899999888889999999999999999999777899999999999999999887 333222 2789999999886
Q ss_pred cccccCCCCCCCCceeEEEecCCcCc---ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLH---VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN- 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~- 156 (279)
....+...+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.... ..+ .++|++|+++++
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-------~~~--~~~L~~L~l~~n~ 203 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-------QGL--PPSLTELHLDGNK 203 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-------SSC--CTTCSEEECTTSC
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-------ccc--cccCCEEECCCCc
Confidence 34555556788999999999999885 44567888999999999999886322 222 278999999987
Q ss_pred ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhh
Q 044855 157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQI 223 (279)
Q Consensus 157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~ 223 (279)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.. +|+.|++++|++.+..+..|
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 35668889999999999999998777789999999999999998764 89999999999987766666
Q ss_pred hc------CcCCcEEEccCCcccc--cCChhhhcccCCcEEEccCCE
Q 044855 224 NE------LSNLHVLLLRGNSLQG--HIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 224 ~~------~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~ 262 (279)
.. .+.++.+++++|++.. ..+..+..+++++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 43 4789999999999863 456788889999999999985
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.8e-28 Score=214.54 Aligned_cols=102 Identities=24% Similarity=0.221 Sum_probs=63.9
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+.+..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. .++.. .+++|++|++++|..
T Consensus 58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDF 133 (562)
T ss_dssp ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCC
T ss_pred ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCc
Confidence 46667777666667777777777777777777666666777777777777777665 33322 566667777766653
Q ss_pred cccccCCCCCCCCceeEEEecCCcCc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLH 106 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 106 (279)
..--....+..+++|++|++++|.+.
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred cccCchHhhcccCcccEEecCCCccc
Confidence 22111234566666666666666553
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=211.33 Aligned_cols=261 Identities=23% Similarity=0.277 Sum_probs=186.1
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
|+++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+. ...+..+..+++|++|++++|..
T Consensus 6 ~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 6 DRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp ECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCC
T ss_pred ecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCce
Confidence 58899999 5666555 89999999999999777788999999999999999997 45557889999999999999975
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcc--cceeccCC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSL--EGLDISGN 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~l~l~~~ 156 (279)
. .++.. .+++|++|++++|.+.. +|..+..+++|++|++++|.+.+. .+..+++| +.++++++
T Consensus 82 ~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 82 V-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---------SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp C-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---------GGGGGTTSCEEEEEEEEC
T ss_pred e-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---------hccccccceeeEEEeecc
Confidence 4 55554 78999999999999965 568899999999999999887531 12222333 33333322
Q ss_pred C-------Cccc--------------------------------------------------------cC----------
Q 044855 157 I-------PNWI--------------------------------------------------------GN---------- 163 (279)
Q Consensus 157 ~-------~~~~--------------------------------------------------------~~---------- 163 (279)
- +..+ +.
T Consensus 149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228 (520)
T ss_dssp TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEE
T ss_pred cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccc
Confidence 0 0111 11
Q ss_pred -----------------CCCCcEEEccccEeeeeccccc-----cCCCCccEEeccCCc---------------------
Q 044855 164 -----------------ISTLRVLLMSKNYLEANIPVQL-----NHLKSLELIDIFENS--------------------- 200 (279)
Q Consensus 164 -----------------~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~l~l~~~~--------------------- 200 (279)
.++|+.|++++|.+++..|..+ ..+++|+.++++.|.
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEE
Confidence 2267777777777775566555 555555555544433
Q ss_pred -----Cc--------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccc--cCChhhhcccCCcEEEccCCEeee
Q 044855 201 -----LS--------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQG--HIPNELCQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 201 -----~~--------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~ 265 (279)
+. .+|++|++++|++.+..+..+..+++|+.|++++|++++ ..|..+..+++|+.|++++|.+++
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred cCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 21 167777777777777677777777888888888887775 345667777778888888888776
Q ss_pred ecCcc-ccCCcccc
Q 044855 266 SIPSC-LGNVSFWR 278 (279)
Q Consensus 266 ~~p~~-~~~~~~l~ 278 (279)
.+|.. +..++.|+
T Consensus 389 ~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 389 DEKKGDCSWTKSLL 402 (520)
T ss_dssp CGGGCSCCCCTTCC
T ss_pred ccccchhccCccCC
Confidence 56653 55555554
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=7.9e-28 Score=212.98 Aligned_cols=256 Identities=21% Similarity=0.218 Sum_probs=210.6
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
+|++|.+.+..+.+|+.+++|++|+|++|.+++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|.
T Consensus 81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~- 158 (597)
T 3oja_B 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN- 158 (597)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-
T ss_pred ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCc-
Confidence 57899999888899999999999999999999888888999999999999999997 5565667899999999999886
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCC------------CcCcchhhccCcc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC------------GKMDDGLRSSTSL 148 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~~~~~L 148 (279)
+..++...+..+++|++|++++|.+..++ +..+++|+.|++++|.+.+..... ..++. ...++|
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L 234 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVEL 234 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC--SCCSCC
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc--ccCCCC
Confidence 45566677899999999999999997765 345677777777776654311100 00001 113568
Q ss_pred cceeccCC---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccC
Q 044855 149 EGLDISGN---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFF 216 (279)
Q Consensus 149 ~~l~l~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~ 216 (279)
+.|+++++ -+..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.. +|+.|++++|.+.
T Consensus 235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence 88888877 34567889999999999999999888899999999999999998754 8999999999997
Q ss_pred CCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855 217 GRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS 266 (279)
Q Consensus 217 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (279)
.+|..+..+++|+.|++++|.+++.. +..+++|+.|++++|++.+.
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred -ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 57778889999999999999998543 56788999999999999854
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.2e-27 Score=196.81 Aligned_cols=244 Identities=19% Similarity=0.287 Sum_probs=175.1
Q ss_pred ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855 13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT 92 (279)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (279)
..+..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+. + .+..+++|++|++++|... .+ ..+..+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~--~~~~l~~L~~L~L~~n~i~-~~--~~~~~l 109 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-S--PLSNLVKLTNLYIGTNKIT-DI--SALQNL 109 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCC-CC--GGGTTC
T ss_pred ccchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-h--hhhcCCcCCEEEccCCccc-Cc--hHHcCC
Confidence 34568999999999999988 454 388999999999999988743 3 2889999999999998643 33 347889
Q ss_pred CceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC--------------
Q 044855 93 SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP-------------- 158 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-------------- 158 (279)
++|++|++++|.+..++. +..+++|+.|++++|...... ..+..+++|++++++++-.
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-------SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS 181 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccc-------cchhhCCCCcEEEecCCCcCCchhhccCCCCCE
Confidence 999999999999987766 677888888888888543221 2244444555555544411
Q ss_pred -----------ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc--------cceEEEeecCccCCCC
Q 044855 159 -----------NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS--------KLITLDLRDNKFFGRI 219 (279)
Q Consensus 159 -----------~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--------~L~~L~l~~~~~~~~~ 219 (279)
..+..+++|+.+++++|.+....+ +..+++|+.|++++|.+.. +|+.|++++|.+.+.
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-
Confidence 113344455555555554444222 5566777777777776543 777888888877553
Q ss_pred chhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 220 PYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 220 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|+.++.++.|+
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 4567788888888888888753 4577888888999999988877788888877775
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=205.74 Aligned_cols=256 Identities=21% Similarity=0.259 Sum_probs=179.7
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|..
T Consensus 38 ~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l- 112 (353)
T 2z80_A 38 GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL- 112 (353)
T ss_dssp CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC-
T ss_pred CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcC-
Confidence 4566666 4444443 47888888888877655557778888888888888776 34445677778888888877753
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCc-ccccCCCCCcCcchhhccCcccceeccCC--
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNK-LVGNFPICGKMDDGLRSSTSLEGLDISGN-- 156 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-- 156 (279)
..++...+..+++|++|++++|.+..++. .+..+++|+.|++++|. +.. ..+..+..+++|++++++++
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK------IQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE------ECTTTTTTCCEEEEEEEEETTC
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc------cCHHHccCCCCCCEEECCCCCc
Confidence 34444446777788888888887777765 56677888888888774 331 12345666777777777766
Q ss_pred ---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------------cceEEEeecCccCC---
Q 044855 157 ---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------------KLITLDLRDNKFFG--- 217 (279)
Q Consensus 157 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------------~L~~L~l~~~~~~~--- 217 (279)
.+..++.+++|+.|++++|.+.......+..+++|+.|++++|.+.. .++.++++++.+.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 35566777778888887777655333334456777777777776653 46667777776654
Q ss_pred -CCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecC
Q 044855 218 -RIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268 (279)
Q Consensus 218 -~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 268 (279)
.+|..+..+++|+.|++++|++++.....+..+++|+.|++++|++++..|
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 245667889999999999999994444445889999999999999987665
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.1e-28 Score=216.69 Aligned_cols=131 Identities=21% Similarity=0.151 Sum_probs=106.4
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..|.+|+.+++|++|++++|++++..|..|.++++|++|++++|.+. ..+...+..+++|++|++++|..
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCC
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcc
Confidence 57889998888889999999999999999998777788999999999999999887 44556688899999999988865
Q ss_pred cccccCCCCCCCCceeEEEecCCc-CcccC-hhhhcCCCccEEEeeCCcccccC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQ-LHVIP-SFLLQQDHLKFLDLSHNKLVGNF 132 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~ 132 (279)
........+..+++|++|++++|. +..++ ..+..+++|++|++++|.+.+..
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 432233467888899999999887 56665 46778888999999988876543
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=7.4e-28 Score=220.94 Aligned_cols=267 Identities=22% Similarity=0.228 Sum_probs=190.9
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
.+++.++ .+|. -.+++++|+|++|.+++..+..|.++++|++|++++|.....+....+.++++|++|++++|. +
T Consensus 11 cs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l 85 (844)
T 3j0a_A 11 YRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-I 85 (844)
T ss_dssp ESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-C
T ss_pred ccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-C
Confidence 3566777 4454 458899999999999988889999999999999999976667767889999999999999987 4
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcc-cChh--hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHV-IPSF--LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI- 157 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~- 157 (279)
....+..+..+++|++|++++|.+.. ++.. +..+++|++|++++|.+.+.. ....+.++++|++|+++++.
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCcC
Confidence 45566788999999999999999864 4443 788999999999999886432 23568899999999999872
Q ss_pred ----CccccCC--CCCcEEEccccEeeeeccccccCC-------------------------------------------
Q 044855 158 ----PNWIGNI--STLRVLLMSKNYLEANIPVQLNHL------------------------------------------- 188 (279)
Q Consensus 158 ----~~~~~~~--~~L~~L~l~~~~l~~~~~~~l~~~------------------------------------------- 188 (279)
+..+..+ ++|+.|++++|.+....+..+..+
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 2333333 445555555554443333222222
Q ss_pred -------------------------CCccEEeccCCcCcc----------cceEEEeecCccCCCCchhhhcCcCCcEEE
Q 044855 189 -------------------------KSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQINELSNLHVLL 233 (279)
Q Consensus 189 -------------------------~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 233 (279)
++|+.|++++|.+.. +|+.|++++|++.+..+..+..+++|+.|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 345555555554432 566666666666665566666667777777
Q ss_pred ccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 234 LRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
+++|.+++..+..+..+++|+.|++++|.+++..+..|..++.|+
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 777776655566666677777777777777655555666666654
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=6e-28 Score=198.98 Aligned_cols=247 Identities=19% Similarity=0.180 Sum_probs=202.0
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+....+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+. .++.... ++|++|++++|.
T Consensus 60 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~- 134 (332)
T 2ft3_A 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNR- 134 (332)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSC-
T ss_pred ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCc-
Confidence 57899999888899999999999999999999887889999999999999999887 3332222 799999999886
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcc---cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHV---IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN- 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~- 156 (279)
+..++...+..+++|++|++++|.++. .+..+..+ +|+.|++++|.+.... ..+ .++|++|+++++
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-------~~~--~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP-------KDL--PETLNELHLDHNK 204 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC-------SSS--CSSCSCCBCCSSC
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC-------ccc--cCCCCEEECCCCc
Confidence 446666678899999999999998853 34455555 8999999999887422 222 268999999987
Q ss_pred ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc---------cceEEEeecCccCCCCchhh
Q 044855 157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS---------KLITLDLRDNKFFGRIPYQI 223 (279)
Q Consensus 157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~---------~L~~L~l~~~~~~~~~~~~~ 223 (279)
.+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.. +|+.|++++|++++..+..+
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 23567889999999999999998777789999999999999998764 89999999999987666666
Q ss_pred hc------CcCCcEEEccCCccc--ccCChhhhcccCCcEEEccCCE
Q 044855 224 NE------LSNLHVLLLRGNSLQ--GHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 224 ~~------~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
.. .+.|+.+++++|++. +..+..+..+++|+.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 44 467999999999987 5677888899999999999985
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.4e-27 Score=210.11 Aligned_cols=267 Identities=22% Similarity=0.285 Sum_probs=175.9
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..|.+|+.+++|++|++++|.++ .+|.. .+++|++|++++|.+.+...+..+.++++|++|++++|..
T Consensus 82 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred ECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 57899999888999999999999999999998 56655 8999999999999987433346788899999999988764
Q ss_pred cccccCCCCCCCCce--eEEEecCCcC--cc-cChhhhc-----------------------------------------
Q 044855 81 MLQVKTESWHPTSQL--KVLKLSDCQL--HV-IPSFLLQ----------------------------------------- 114 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~~~~~----------------------------------------- 114 (279)
.. ..+..+++| ++|++++|.+ .. .+..+..
T Consensus 159 ~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 159 RQ----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp CT----TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred cc----CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence 32 223333444 7777666654 11 1111111
Q ss_pred ----------------------------------------CCCccEEEeeCCcccccCCCCC------------------
Q 044855 115 ----------------------------------------QDHLKFLDLSHNKLVGNFPICG------------------ 136 (279)
Q Consensus 115 ----------------------------------------~~~L~~L~l~~~~~~~~~~~~~------------------ 136 (279)
.++|++|++++|.+.+..|...
T Consensus 235 ~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence 1256666666665553333110
Q ss_pred ---cCc-c---h----------------------hhccCcccceeccCC-----CCccccCCCCCcEEEccccEeeee--
Q 044855 137 ---KMD-D---G----------------------LRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEAN-- 180 (279)
Q Consensus 137 ---~~~-~---~----------------------~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~-- 180 (279)
.++ . . ...+++|++++++++ .+..++.+++|+.|++++|.+++.
T Consensus 315 ~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 394 (562)
T 3a79_B 315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394 (562)
T ss_dssp CCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH
T ss_pred ceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc
Confidence 000 0 0 045566777777665 345566677777777777776652
Q ss_pred ccccccCCCCccEEeccCCcCcc-----------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhc
Q 044855 181 IPVQLNHLKSLELIDIFENSLSS-----------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQ 249 (279)
Q Consensus 181 ~~~~l~~~~~L~~l~l~~~~~~~-----------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 249 (279)
.|..+..+++|+.|++++|.+.. +|+.|++++|++++..+..+. ++|+.|++++|+++ .+|..+..
T Consensus 395 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~ 471 (562)
T 3a79_B 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH 471 (562)
T ss_dssp HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence 23456677777777777776542 667777777776554433322 57788888888777 56666667
Q ss_pred ccCCcEEEccCCEeeeecCcc-ccCCcccc
Q 044855 250 LAKLRIMDLSNNIFSGSIPSC-LGNVSFWR 278 (279)
Q Consensus 250 ~~~L~~L~l~~n~l~~~~p~~-~~~~~~l~ 278 (279)
+++|+.|++++|.++ .+|.. +..++.|+
T Consensus 472 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 472 LQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp SCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred CCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 788888888888887 66665 77776665
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=8.5e-27 Score=200.63 Aligned_cols=261 Identities=26% Similarity=0.307 Sum_probs=142.5
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+.+. + .+..+++|++|++++|..
T Consensus 74 ~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-D--PLKNLTNLNRLELSSNTI 146 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCSEEEEEEEEE
T ss_pred ECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-h--HHcCCCCCCEEECCCCcc
Confidence 355555554433 5566666666666666553322 55666666666666655422 1 255555566665555432
Q ss_pred ccccc-------------------CCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCC------
Q 044855 81 MLQVK-------------------TESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPIC------ 135 (279)
Q Consensus 81 ~~~~~-------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------ 135 (279)
.. .+ ...+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+..+..
T Consensus 147 ~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 224 (466)
T 1o6v_A 147 SD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLD 224 (466)
T ss_dssp CC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCC
T ss_pred CC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCC
Confidence 11 10 011344556666666666555443 2455566666666665544221100
Q ss_pred --------CcCcchhhccCcccceeccCCCC---ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-
Q 044855 136 --------GKMDDGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS- 203 (279)
Q Consensus 136 --------~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~- 203 (279)
-.....+..+++|+.|+++++-. ..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+..
T Consensus 225 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 225 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC
T ss_pred EEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc
Confidence 00002334444555555554411 114455556666666665554222 5566666666666665543
Q ss_pred -------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcc
Q 044855 204 -------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF 276 (279)
Q Consensus 204 -------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 276 (279)
+|+.|++++|++.+..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..++.
T Consensus 303 ~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 376 (466)
T 1o6v_A 303 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTR 376 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred hhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence 66777777777665443 55677777777777777643 456677788888888888876655 666666
Q ss_pred cc
Q 044855 277 WR 278 (279)
Q Consensus 277 l~ 278 (279)
|+
T Consensus 377 L~ 378 (466)
T 1o6v_A 377 IT 378 (466)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.2e-27 Score=195.08 Aligned_cols=221 Identities=19% Similarity=0.260 Sum_probs=131.6
Q ss_pred CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE
Q 044855 18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV 97 (279)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 97 (279)
.++++.|+++++.++ .+|..+..+++|++|++++|.+. .++ ..+..+++|++|++++|... .++ ..+..+++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALP-ASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCC-CCC-GGGGGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccc-cCc-HHHhcCcCCCE
Confidence 366677777777766 55666666777777777777665 332 45566677777777666543 332 34566677777
Q ss_pred EEecCCcC-cccChhhhc---------CCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccC
Q 044855 98 LKLSDCQL-HVIPSFLLQ---------QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGN 163 (279)
Q Consensus 98 L~l~~~~~-~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~ 163 (279)
|++++|.. ..+|..+.. +++|+.|++++|.+. .++..+..+++|++|++++| ++..++.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-------SLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-------cchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 77776543 555554433 677777777776654 22233344444444444433 3344555
Q ss_pred CCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855 164 ISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 243 (279)
Q Consensus 164 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (279)
+++|+.|++++|.+.+..|..+..+++|+.|+ +++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~--------------L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLI--------------LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE--------------CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEE--------------CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 56666666666655555555555555554433 3334444566666677777777777777776677
Q ss_pred ChhhhcccCCcEEEccCCEee
Q 044855 244 PNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 244 ~~~~~~~~~L~~L~l~~n~l~ 264 (279)
|..+..+++++.+++..+.+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSC
T ss_pred cHHHhhccCceEEeCCHHHHH
Confidence 777777777777776665543
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=199.87 Aligned_cols=244 Identities=28% Similarity=0.376 Sum_probs=167.1
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccc------------------hhh
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS------------------INS 63 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------~~~ 63 (279)
+++|.+.+..+ ++++++|++|++++|.+++. +. +..+++|++|++++|.+.+... ...
T Consensus 97 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~ 172 (466)
T 1o6v_A 97 MNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 172 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG
T ss_pred CCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchh
Confidence 55666664443 66677777777776666632 22 5566666666666665442110 012
Q ss_pred hcccccceeeeecCCcccccccC--------------------CCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEe
Q 044855 64 LANHSKLEVLLLSSGSNMLQVKT--------------------ESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDL 123 (279)
Q Consensus 64 ~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 123 (279)
+..+++|+.|++++|... .... ..+..+++|++|++++|.+..++ .+..+++|+.|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l 250 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 250 (466)
T ss_dssp GTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred hccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEEC
Confidence 344455555555554321 1110 00234455555555555554442 3455666777777
Q ss_pred eCCcccccCCCCCcCcchhhccCcccceeccCCCC---ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc
Q 044855 124 SHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS 200 (279)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~ 200 (279)
++|.+.+. ..+..+++|+.|+++++-. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 251 ~~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 251 ANNQISNL--------APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CSSCCCCC--------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred CCCccccc--------hhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 76665421 1277889999999998832 236788999999999999987443 7899999999999998
Q ss_pred Ccc--------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855 201 LSS--------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 201 ~~~--------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (279)
+.. +|+.|++++|++.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+++
T Consensus 321 l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 321 ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 865 899999999999765 467899999999999999997766 7899999999999999995
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.3e-26 Score=198.65 Aligned_cols=225 Identities=19% Similarity=0.197 Sum_probs=164.5
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
+++++|+|++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|. +..++...+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence 57888888888888777777888888888888888776 4455677778888888887775 446666667778888888
Q ss_pred EecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC---ccccCCCCCcEEEccc
Q 044855 99 KLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---NWIGNISTLRVLLMSK 174 (279)
Q Consensus 99 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~L~~L~l~~ 174 (279)
++++|.++.++. .+..+++|+.|+++++...+.. ....+..+++|++|+++++-. ..+..+++|+.|++++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-----SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----ChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 888888877665 5667788888888875433221 123466677777777776622 2345667777777777
Q ss_pred cEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCc
Q 044855 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLR 254 (279)
Q Consensus 175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 254 (279)
|.+++..+..+..+++|+.|++++ |++.+..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMN--------------SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred CcCcccCcccccCccCCCEEEeCC--------------CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 777776666677776666555554 445455677788889999999999999877777788889999
Q ss_pred EEEccCCEee
Q 044855 255 IMDLSNNIFS 264 (279)
Q Consensus 255 ~L~l~~n~l~ 264 (279)
.|++++|++.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 9999999887
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=197.22 Aligned_cols=237 Identities=21% Similarity=0.237 Sum_probs=174.2
Q ss_pred CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855 4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ 83 (279)
Q Consensus 4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 83 (279)
+..++ .+|..+. ++++.|+|++|.++...+..|.++++|++|++++|.+. .+....+..+++|++|++++|. +..
T Consensus 52 ~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~-l~~ 126 (440)
T 3zyj_A 52 RKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR-LTT 126 (440)
T ss_dssp SCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSC-CSS
T ss_pred CCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCc-CCe
Confidence 34444 4444443 67888888888888777778888888888888888886 4555677888888888888875 456
Q ss_pred ccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC---c
Q 044855 84 VKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP---N 159 (279)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~ 159 (279)
++...+..+++|++|++++|.+..++. .+..+++|+.|+++++...... ....+..+++|++|+++++-. .
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-----SEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----CTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-----CcchhhcccccCeecCCCCcCcccc
Confidence 666677888888888888888877765 5667888888888875433221 123566677788888877622 2
Q ss_pred cccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855 160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239 (279)
Q Consensus 160 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (279)
.+..+++|+.|++++|.++...+..+..+++|+.|++++| ++.+..+..|..+++|+.|++++|++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS--------------QIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--------------CCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC--------------ceeEEChhhhcCCCCCCEEECCCCCC
Confidence 3556677888888888777766777777776665555554 44455666778888999999999998
Q ss_pred cccCChhhhcccCCcEEEccCCEee
Q 044855 240 QGHIPNELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (279)
++..+..+..+++|+.|++++|++.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 8777777888889999999999886
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5e-27 Score=192.92 Aligned_cols=219 Identities=20% Similarity=0.280 Sum_probs=168.4
Q ss_pred CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccE
Q 044855 41 NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120 (279)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 120 (279)
..+++++|++++|.+. .++ ..+..+++|++|++++|... .++ ..+..+++|++|++++|.+..+|..+..+++|+.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 3589999999999987 444 45777999999999998754 444 5678899999999999999999999999999999
Q ss_pred EEeeCCcccccCCCCC---cCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccE
Q 044855 121 LDLSHNKLVGNFPICG---KMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLEL 193 (279)
Q Consensus 121 L~l~~~~~~~~~~~~~---~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 193 (279)
|++++|...+..|... .....+..+++|+.|+++++ +|..++.+++|+.|++++|.+++ .|..+..+++
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~--- 230 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK--- 230 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT---
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC---
Confidence 9999987665443110 01112334566666666544 34455556666666666666554 3444555554
Q ss_pred EeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855 194 IDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273 (279)
Q Consensus 194 l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 273 (279)
|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.++.
T Consensus 231 -----------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 231 -----------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -----------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -----------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 445666666666788889999999999999999999899999999999999999999999999999999
Q ss_pred Ccccc
Q 044855 274 VSFWR 278 (279)
Q Consensus 274 ~~~l~ 278 (279)
++.|+
T Consensus 300 L~~L~ 304 (328)
T 4fcg_A 300 LPANC 304 (328)
T ss_dssp SCTTC
T ss_pred ccCce
Confidence 99876
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.8e-26 Score=188.03 Aligned_cols=239 Identities=23% Similarity=0.306 Sum_probs=167.0
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccc-hhhhcccccceeeeecCCcc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS-INSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 80 (279)
.+++.++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+..... ...+..+++|++|++++|..
T Consensus 14 c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 14 CNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp CCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred cCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 3455666 4454332 689999999999985444567899999999999998863211 24556788999999988864
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-- 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-- 156 (279)
. .++. .+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.... +..+..+++|++|+++++
T Consensus 91 ~-~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 91 I-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF------NGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp E-EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS------TTTTTTCTTCCEEECTTCEE
T ss_pred c-cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc------hhhcccCcCCCEEECCCCcc
Confidence 3 3332 36778999999999998877764 6778899999999998876332 345667788888888776
Q ss_pred ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEE
Q 044855 157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVL 232 (279)
Q Consensus 157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 232 (279)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+. +..+..+..+++|+.|
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--------------SLDTFPYKCLNSLQVL 228 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--------------BCCSGGGTTCTTCCEE
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--------------ccChhhccCcccCCEe
Confidence 3556777888888888888888766777777777777666666543 3333345555666666
Q ss_pred EccCCcccccCChhhhccc-CCcEEEccCCEeee
Q 044855 233 LLRGNSLQGHIPNELCQLA-KLRIMDLSNNIFSG 265 (279)
Q Consensus 233 ~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~ 265 (279)
++++|++++..+..+..++ +|+.|++++|++++
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6666666555555555553 56666666666553
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.3e-26 Score=182.60 Aligned_cols=247 Identities=21% Similarity=0.239 Sum_probs=157.6
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+. ......+..+++|++|++++|...
T Consensus 18 c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 18 CPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTC
T ss_pred cCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCc
Confidence 3455565 344333 468899999999888766677888999999999998887 444567788888999999888656
Q ss_pred ccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI--- 157 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--- 157 (279)
..+....+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.... ...+..+++|++|+++++-
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP------DDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCE
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC------HhHhccCCCccEEECCCCcccc
Confidence 666667778888899999988888666 456677888999999888776322 1234455555555555541
Q ss_pred --CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855 158 --PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR 235 (279)
Q Consensus 158 --~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (279)
+..+..+++|+.|++++|.+++..+..+..+++|+. |++++|++.+..+..+..+++|+.|+++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------------L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT--------------LYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE--------------EECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccE--------------eeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 123444555555555555555544555555544443 3444444444444556667777777777
Q ss_pred CCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855 236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273 (279)
Q Consensus 236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 273 (279)
+|++....+.. .....++.+....+.+....|+.+..
T Consensus 234 ~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 234 DNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp SSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred CCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 77765332211 11122444445566666666665544
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1e-27 Score=196.28 Aligned_cols=242 Identities=22% Similarity=0.207 Sum_probs=154.1
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.+...+...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+.. .+..+++|++|++++|...
T Consensus 17 ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp CCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEEE
T ss_pred ccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCccc
Confidence 4455555444555667778888888888888666677888888888888888876433 2777788888888877532
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI---- 157 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---- 157 (279)
.++ ..++|++|++++|.+..++.. .+++|+.|++++|.+.... +..+..+++|++|+++++-
T Consensus 94 -~l~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 94 -ELL-----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp -EEE-----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGG------GBCTGGGSSEEEEECTTSCCCEE
T ss_pred -ccc-----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCcc------chhhhccCCCCEEECCCCCCCcc
Confidence 222 237888888888887666532 3577888888888776321 2344555666666666552
Q ss_pred -Cccc-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855 158 -PNWI-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR 235 (279)
Q Consensus 158 -~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (279)
+..+ ..+++|++|++++|.++.. +. ...+++| +.|++++|++.+ ++..+..+++|+.|+++
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L--------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKL--------------KTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTC--------------CEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccC--------------CEEECCCCcCCc-chhhhcccCcccEEECc
Confidence 1122 2455666666666665553 11 1224444 455555555543 33346667777777777
Q ss_pred CCcccccCChhhhcccCCcEEEccCCEee-eecCccccCCcccc
Q 044855 236 GNSLQGHIPNELCQLAKLRIMDLSNNIFS-GSIPSCLGNVSFWR 278 (279)
Q Consensus 236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~l~ 278 (279)
+|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+
T Consensus 223 ~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp TSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred CCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 77777 45666667777777777777776 56666666655543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.1e-25 Score=184.31 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=208.5
Q ss_pred ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855 15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ 94 (279)
Q Consensus 15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (279)
-..|+.....+.+++.++ .+|..+. ++|++|++++|.+. ..+...+..+++|++|++++|. +..+....+..+++
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGS 101 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCC
Confidence 345777778899999888 6776554 59999999999997 5565678999999999999886 45566677899999
Q ss_pred eeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------CCccccCCCCC
Q 044855 95 LKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTL 167 (279)
Q Consensus 95 L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------~~~~~~~~~~L 167 (279)
|++|++++|.++.++.. +..+++|++|++++|.+..... ...+..+++|++|+++++ .+..++.+++|
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc-----hhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 99999999999988876 7789999999999998862211 136778999999999986 24567889999
Q ss_pred cEEEccccEeeeeccccccCCCCccEEeccCCcCcc----------cceEEEeecCccCCCCchhh---hcCcCCcEEEc
Q 044855 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS----------KLITLDLRDNKFFGRIPYQI---NELSNLHVLLL 234 (279)
Q Consensus 168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~----------~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l 234 (279)
+.|++++|.+++..+..+..+++|+.|++++|.+.. +|+.|++++|++.+..+..+ ...+.++.+++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 999999999998888899999999999999998754 89999999999977554433 34677889999
Q ss_pred cCCccccc----CChhhhcccCCcEEEccCCEeeeecCcc-ccCCcccc
Q 044855 235 RGNSLQGH----IPNELCQLAKLRIMDLSNNIFSGSIPSC-LGNVSFWR 278 (279)
Q Consensus 235 ~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~l~ 278 (279)
+++.+.+. +|..+..+++|+.|++++|.++ .+|+. |+.++.|+
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQ 304 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCC
Confidence 99988753 6677889999999999999999 77765 58888876
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.3e-25 Score=189.75 Aligned_cols=205 Identities=22% Similarity=0.227 Sum_probs=110.4
Q ss_pred CCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCC
Q 044855 11 LPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWH 90 (279)
Q Consensus 11 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 90 (279)
.+..++++++|++|++++|.+++ .| .+..+++|++|++++|.+.+. .+..+++|++|++++|.... ++ +.
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~-~~---~~ 103 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTN-LD---VT 103 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC---CT
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCce-ee---cC
Confidence 33445556666666666666653 33 455666666666666665532 15555666666666654322 21 45
Q ss_pred CCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-CCc--cccCCCCC
Q 044855 91 PTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-IPN--WIGNISTL 167 (279)
Q Consensus 91 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~--~~~~~~~L 167 (279)
.+++|++|++++|.++.++ +..+++|++|++++|.+.+. .+..+++|++++++++ ... .++.+++|
T Consensus 104 ~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l---------~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L 172 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI---------DVSHNTQLTELDCHLNKKITKLDVTPQTQL 172 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC---------CCTTCTTCCEEECTTCSCCCCCCCTTCTTC
T ss_pred CCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee---------ccccCCcCCEEECCCCCcccccccccCCcC
Confidence 5666666666666665554 45556666666666655421 1344555555555554 111 23445555
Q ss_pred cEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240 (279)
Q Consensus 168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (279)
+.|++++|.+++ .+ +..+++|+.|++++|.+.. +|+.|++++|++.+ +| +..+++|+.|++++|+++
T Consensus 173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred CEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 666666555554 22 4455555555555555442 55555555555544 23 445555555555555555
Q ss_pred cc
Q 044855 241 GH 242 (279)
Q Consensus 241 ~~ 242 (279)
+.
T Consensus 247 ~~ 248 (457)
T 3bz5_A 247 EL 248 (457)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=7.7e-26 Score=184.29 Aligned_cols=256 Identities=22% Similarity=0.216 Sum_probs=198.5
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCccccc--CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCC
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN--FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSG 78 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 78 (279)
+|++|.++...+..|+++++|++|++++|.++.. .+..+..+++|++|++++|.+. ..+ ..+..+++|++|++++|
T Consensus 34 ~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~-~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEE-EEEETCTTCCEEECTTS
T ss_pred ECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cCh-hhcCCCCCCCEEECCCC
Confidence 4789999977777899999999999999998732 3566778999999999999887 333 34788999999999998
Q ss_pred cccccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-
Q 044855 79 SNMLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN- 156 (279)
Q Consensus 79 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~- 156 (279)
..........+..+++|++|++++|.+... +..+..+++|++|++++|.+.+. ..+..+..+++|++|+++++
T Consensus 112 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----FLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-----EECSCCTTCTTCCEEECTTSC
T ss_pred cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-----cchhHHhhCcCCCEEECCCCC
Confidence 754333336788999999999999998544 55677899999999999988631 23466788999999999988
Q ss_pred ----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCc-CCcE
Q 044855 157 ----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELS-NLHV 231 (279)
Q Consensus 157 ----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~ 231 (279)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| ++.+..+..+..++ +|+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN--------------HIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS--------------CCCBCSSSSCCCCCTTCCE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC--------------CCcccCHHHHHhhhccCCE
Confidence 3566788999999999999998866667777777776555554 45556677777775 8999
Q ss_pred EEccCCcccccCC--hhhhcccCCcEEEccCCEeeeecCccccCCccc
Q 044855 232 LLLRGNSLQGHIP--NELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFW 277 (279)
Q Consensus 232 L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l 277 (279)
|++++|+++.... .....+...+.+.+..+.+....|+.+...+.+
T Consensus 253 L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~ 300 (306)
T 2z66_A 253 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 300 (306)
T ss_dssp EECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGG
T ss_pred EEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceee
Confidence 9999999975422 112223345556677788888889888776654
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.8e-25 Score=189.39 Aligned_cols=247 Identities=22% Similarity=0.214 Sum_probs=153.6
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
|+++|.+++. | +++.+++|++|++++|.+++ ++ +..+++|++|++++|.+.+. .+..+++|++|++++|..
T Consensus 48 ~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 48 DCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp ECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC----CCTTCTTCCEEECCSSCC
T ss_pred EccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee----ecCCCCcCCEEECCCCcC
Confidence 5788888865 4 68999999999999999885 33 78899999999999988743 277888999999988864
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc-
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN- 159 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~- 159 (279)
. .++ +..+++|++|++++|.++.++ +..+++|++|++++|...+.. .+..+++|+.|+++++-..
T Consensus 119 ~-~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 119 T-KLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--------DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp S-CCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--------CCTTCTTCCEEECCSSCCCC
T ss_pred C-eec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--------ccccCCcCCEEECCCCccce
Confidence 3 232 677888999999888887664 566777777777776432211 2334455555555544111
Q ss_pred ----------------------cccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc-------cceE---
Q 044855 160 ----------------------WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS-------KLIT--- 207 (279)
Q Consensus 160 ----------------------~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-------~L~~--- 207 (279)
.++.+++|+.|++++|.+++ .| +..+++|+.|++++|.+.. +|+.
T Consensus 185 l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l 261 (457)
T 3bz5_A 185 LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred eccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence 13344455555555555544 22 4445555555555554432 2222
Q ss_pred -------EEeecCccCCCCchhhhcCcCCcEEEccCCcccccCCh--------hhhcccCCcEEEccCCEeeeecCcccc
Q 044855 208 -------LDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN--------ELCQLAKLRIMDLSNNIFSGSIPSCLG 272 (279)
Q Consensus 208 -------L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~p~~~~ 272 (279)
+++++|...+.+| +..+++|+.|++++|...+.+|. .+..+++|+.|++++|.+++ ++ ++
T Consensus 262 ~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~ 336 (457)
T 3bz5_A 262 IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VS 336 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CT
T ss_pred cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cc
Confidence 2222222222222 23456677777777764433332 24456778888888888875 33 66
Q ss_pred CCcccc
Q 044855 273 NVSFWR 278 (279)
Q Consensus 273 ~~~~l~ 278 (279)
.++.|+
T Consensus 337 ~l~~L~ 342 (457)
T 3bz5_A 337 HNTKLK 342 (457)
T ss_dssp TCTTCS
T ss_pred cCCcCc
Confidence 666664
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-26 Score=198.24 Aligned_cols=226 Identities=24% Similarity=0.205 Sum_probs=154.2
Q ss_pred CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCcee
Q 044855 17 HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLK 96 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 96 (279)
.+++|++|+|++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|... .++ ..++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-ELL-----VGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEE-EEE-----ECTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCC-CCC-----CCCCcC
Confidence 44589999999998887777788889999999999988864332 777888888888887532 222 237888
Q ss_pred EEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-----Ccccc-CCCCCcEE
Q 044855 97 VLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI-----PNWIG-NISTLRVL 170 (279)
Q Consensus 97 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-----~~~~~-~~~~L~~L 170 (279)
+|++++|.+..++.. .+++|+.|++++|.+.+.. +..+..+++|+.|++++|- +..+. .+++|+.|
T Consensus 103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGG------GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCC------chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 888888888666542 4578888888888776322 2344445555555555541 22222 44555555
Q ss_pred EccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcc
Q 044855 171 LMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL 250 (279)
Q Consensus 171 ~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 250 (279)
++++|.+++..+ ...++ +|+.|++++|.+++. +..+..+++|+.|++++|.++ .+|..+..+
T Consensus 175 ~Ls~N~l~~~~~--~~~l~--------------~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l 236 (487)
T 3oja_A 175 NLQYNFIYDVKG--QVVFA--------------KLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (487)
T ss_dssp ECTTSCCCEEEC--CCCCT--------------TCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred ecCCCccccccc--cccCC--------------CCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence 555555544211 11233 555666666666543 445778899999999999998 467778888
Q ss_pred cCCcEEEccCCEee-eecCccccCCccc
Q 044855 251 AKLRIMDLSNNIFS-GSIPSCLGNVSFW 277 (279)
Q Consensus 251 ~~L~~L~l~~n~l~-~~~p~~~~~~~~l 277 (279)
++|+.|++++|+++ +.+|..+..++.|
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 99999999999987 6666667666554
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.3e-25 Score=178.74 Aligned_cols=238 Identities=20% Similarity=0.228 Sum_probs=187.2
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
+|++|.++...+.+|+.+++|++|++++|.+++..+..|..+++|++|++++|. +. ......+..+++|++|++++|.
T Consensus 38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCG 116 (285)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCc
Confidence 478999998888999999999999999999997778899999999999999997 55 5556778899999999999886
Q ss_pred ccccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC--
Q 044855 80 NMLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-- 156 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-- 156 (279)
. ...+...+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+.. ...+..+++|+.|+++++
T Consensus 117 l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 117 L-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCC
T ss_pred C-CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC------HHHhcCccccCEEECCCCcc
Confidence 4 45556778899999999999999988875 4778999999999999887332 245778999999999988
Q ss_pred ---CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEE
Q 044855 157 ---IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLL 233 (279)
Q Consensus 157 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 233 (279)
.+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+. ...+.. .-...++.+.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------c~~~~~-~~~~~l~~~~ 254 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV--------------CDCRAR-PLWAWLQKFR 254 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE--------------CSGGGH-HHHHHHHHCC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc--------------CCCCcH-HHHHHHHhcc
Confidence 3667888999999999999999866667888888887777777643 111110 0112234445
Q ss_pred ccCCcccccCChhhhc--ccCCcEEEccCC
Q 044855 234 LRGNSLQGHIPNELCQ--LAKLRIMDLSNN 261 (279)
Q Consensus 234 l~~n~~~~~~~~~~~~--~~~L~~L~l~~n 261 (279)
...+.+....|..+.+ +..+...++.+|
T Consensus 255 ~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 255 GSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccCccccCCchHhCCcChhhcCHHHhccC
Confidence 6667776667776654 455666666666
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.5e-24 Score=185.93 Aligned_cols=231 Identities=23% Similarity=0.266 Sum_probs=179.5
Q ss_pred ccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEe
Q 044855 21 LKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKL 100 (279)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 100 (279)
.+.++.++..++ .+|..+. +++++|++++|.+. ......+..+++|+.|++++|. +..++...|..+++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEEC
Confidence 467777777777 5666543 68999999999987 4555778899999999999886 45666677889999999999
Q ss_pred cCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----C-CccccCCCCCcEEEcc
Q 044855 101 SDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----I-PNWIGNISTLRVLLMS 173 (279)
Q Consensus 101 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~-~~~~~~~~~L~~L~l~ 173 (279)
++|.+..++.. +..+++|++|++++|.+.... ...+..+++|+.|+++++ + +..+..+++|+.|+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeC------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 99999888764 667899999999999876322 245667777777777763 1 2345667777777777
Q ss_pred ccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCC
Q 044855 174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKL 253 (279)
Q Consensus 174 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 253 (279)
+|.++. .+ .+..+++ |+.|++++|++.+..+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 205 ~n~l~~-~~-~~~~l~~--------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 205 MCNIKD-MP-NLTPLVG--------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TSCCSS-CC-CCTTCTT--------------CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCcccc-cc-ccccccc--------------ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 777665 22 3444444 4456666666666778889999999999999999998889999999999
Q ss_pred cEEEccCCEeeeecCccccCCcccc
Q 044855 254 RIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 254 ~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
+.|++++|.+++..++.|..++.|+
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred CEEECCCCcCCccChHHhccccCCC
Confidence 9999999999966667788888775
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.2e-24 Score=193.82 Aligned_cols=125 Identities=26% Similarity=0.375 Sum_probs=104.9
Q ss_pred hhccCcccceeccCC-----CCccccCCCCCcEEEccccEee-eeccccccCCCCccEEeccCCcCcc----------cc
Q 044855 142 LRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLE-ANIPVQLNHLKSLELIDIFENSLSS----------KL 205 (279)
Q Consensus 142 ~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~l~l~~~~~~~----------~L 205 (279)
+..+.+++.++++.+ .+..+..++.++.|++++|... ...|..+..+++|+.|++++|.+.. +|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 344455566666655 3455677899999999999754 4567789999999999999998764 89
Q ss_pred eEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcc-cCCcEEEccCCEeeee
Q 044855 206 ITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL-AKLRIMDLSNNIFSGS 266 (279)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~ 266 (279)
+.|++++|++.+..+..+..+++|+.|++++|++++..+..+..+ ++|+.|++++|+++..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999988888889999999999999999998889999888 6899999999999843
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=184.78 Aligned_cols=232 Identities=23% Similarity=0.266 Sum_probs=178.3
Q ss_pred CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855 20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK 99 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 99 (279)
..+.++..+..++ .+|..+. +++++|++++|.+. ......+..+++|++|++++|. +..+....|..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEE
Confidence 3567777777777 6666553 68999999999887 5555778889999999998886 4556667788899999999
Q ss_pred ecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC------CCccccCCCCCcEEEc
Q 044855 100 LSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN------IPNWIGNISTLRVLLM 172 (279)
Q Consensus 100 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~------~~~~~~~~~~L~~L~l 172 (279)
+++|.++.++. .+..+++|++|++++|.+.... ...+..+++|+.|+++++ .+..+..+++|+.|++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccC------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 99999988876 5778899999999998876322 245666777777777763 1234666777777777
Q ss_pred cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC
Q 044855 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK 252 (279)
Q Consensus 173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 252 (279)
++|.++. .| .+..+++ |+.|++++|++.+..+..|..+++|+.|++++|++++..+..+..+++
T Consensus 193 ~~n~l~~-~~-~~~~l~~--------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 193 AMCNLRE-IP-NLTPLIK--------------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTSCCSS-CC-CCTTCSS--------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred CCCcCcc-cc-ccCCCcc--------------cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 7777665 33 2444444 445666666666667888999999999999999999888999999999
Q ss_pred CcEEEccCCEeeeecCccccCCcccc
Q 044855 253 LRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 253 L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
|+.|++++|.+++..++.|..++.|+
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred CCEEECCCCCCCccChhHhccccCCC
Confidence 99999999999976667788887775
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.7e-26 Score=188.58 Aligned_cols=237 Identities=20% Similarity=0.187 Sum_probs=171.4
Q ss_pred cccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhc-------ccccceeeeecCCcccccccC
Q 044855 14 CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLA-------NHSKLEVLLLSSGSNMLQVKT 86 (279)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~ 86 (279)
.+...++|+++++++|.+ .+|..+... |++|++++|.+.......... .+++|++|++++|......+.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 455677788888888887 566655443 888899888875322222222 688999999998876555555
Q ss_pred CCC-CCCCceeEEEecCCcCcccChhhhcC-----CCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---
Q 044855 87 ESW-HPTSQLKVLKLSDCQLHVIPSFLLQQ-----DHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI--- 157 (279)
Q Consensus 87 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--- 157 (279)
..+ ..+++|++|++++|.+..+|..+..+ ++|++|++++|.+.+.. +..+..+++|++|++++|-
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS------CEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC------TTTCCCCSSCCEEECCSCTTCH
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch------HHHhccCCCCCEEECCCCCcCc
Confidence 443 78899999999999987777666665 88999999999886322 3567778888888888873
Q ss_pred ----Cccc--cCCCCCcEEEccccEeee---eccccccCCCCccEEeccCCcCcc-----------cceEEEeecCccCC
Q 044855 158 ----PNWI--GNISTLRVLLMSKNYLEA---NIPVQLNHLKSLELIDIFENSLSS-----------KLITLDLRDNKFFG 217 (279)
Q Consensus 158 ----~~~~--~~~~~L~~L~l~~~~l~~---~~~~~l~~~~~L~~l~l~~~~~~~-----------~L~~L~l~~~~~~~ 217 (279)
+..+ +.+++|+.|++++|.++. .....+..+++|+.|++++|.+.. +|+.|++++|+++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 2223 678889999999888873 122334577888888888887643 6778888888876
Q ss_pred CCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855 218 RIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 218 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (279)
.+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5555544 7788888888888754 44 7778888888888887764
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.3e-24 Score=172.97 Aligned_cols=213 Identities=24% Similarity=0.274 Sum_probs=141.8
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
++|++|++++|.+++..+..|.++++|++|++++|.+. ......+..+++|++|++++|. ....+...+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 56889999998888666667888899999999988876 4455567788888888888776 344555667788888888
Q ss_pred EecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEe
Q 044855 99 KLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYL 177 (279)
Q Consensus 99 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l 177 (279)
++++|.+..++. .+..+++|+.|++++|.+... .++..++.+++|+.|++++|.+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------------------------KLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------------------CCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee------------------------cCchhhccCCCCCEEECCCCCC
Confidence 888888766654 566778888888888776521 1345566677777777777777
Q ss_pred eeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEE
Q 044855 178 EANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMD 257 (279)
Q Consensus 178 ~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 257 (279)
++..+..+..+++|+.+.+ .|++++|++.+..+..+ ...+|+.|++++|.+++..+..+..+++|+.|+
T Consensus 162 ~~~~~~~~~~l~~L~~l~l----------~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNL----------SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CEECGGGGHHHHTCTTCCE----------EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred CcCCHHHhhhhhhccccce----------eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 7655555555555551111 34444444433333222 223566666666666655455556666666667
Q ss_pred ccCCEeeeecC
Q 044855 258 LSNNIFSGSIP 268 (279)
Q Consensus 258 l~~n~l~~~~p 268 (279)
+++|++++..|
T Consensus 231 l~~N~~~c~c~ 241 (276)
T 2z62_A 231 LHTNPWDCSCP 241 (276)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCcccccCC
Confidence 76666665443
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.3e-23 Score=179.82 Aligned_cols=244 Identities=25% Similarity=0.314 Sum_probs=109.5
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
+++|.+++ +| +++++++|++|++++|++++ +|.. .++|++|++++|.+.+ .+ .+..+++|++|++++|...
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCC
Confidence 44455553 33 35555555555555555542 3322 2355555555555442 21 3455556666666555422
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI 161 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 161 (279)
.++. ..++|++|++++|.+..+|. +..+++|+.|++++|.+.+... .+.+|+.++++++-...+
T Consensus 209 -~l~~----~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 209 -KLPD----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp -SCCC----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSCC
T ss_pred -cCCC----CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCccccc
Confidence 1111 11356666666666655553 5566666666666666542111 123455555544421111
Q ss_pred -cCCCCCcEEEccccEeeee--cccc-------------ccCC-CCccEEeccCCcCcc------cceEEEeecCccCCC
Q 044855 162 -GNISTLRVLLMSKNYLEAN--IPVQ-------------LNHL-KSLELIDIFENSLSS------KLITLDLRDNKFFGR 218 (279)
Q Consensus 162 -~~~~~L~~L~l~~~~l~~~--~~~~-------------l~~~-~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~ 218 (279)
...++|+.|++++|.+++. .|.. +..+ ++|+.|++++|.+.. +|+.|++++|++.+
T Consensus 273 ~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~- 351 (454)
T 1jl5_A 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE- 351 (454)
T ss_dssp CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-
T ss_pred CcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCcccc-
Confidence 1124455555555544431 1100 0112 356666666665543 56666666666653
Q ss_pred CchhhhcCcCCcEEEccCCcccc--cCChhhhcc-------------cCCcEEEccCCEeee--ecCccccCC
Q 044855 219 IPYQINELSNLHVLLLRGNSLQG--HIPNELCQL-------------AKLRIMDLSNNIFSG--SIPSCLGNV 274 (279)
Q Consensus 219 ~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~n~l~~--~~p~~~~~~ 274 (279)
+|. .+++|+.|++++|++++ .+|.++..+ ++|+.|++++|.+++ .+|..+..+
T Consensus 352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 343 35677777777777776 566666655 667777777777776 666655544
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.4e-23 Score=185.01 Aligned_cols=242 Identities=24% Similarity=0.298 Sum_probs=170.8
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
|++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .++. .+++|++|++++|..
T Consensus 46 ~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 46 NVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPL 113 (622)
T ss_dssp ECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCC
T ss_pred EecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcC
Confidence 46788888 5565554 78999999999888 5555 5789999999999886 3332 678899999988753
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchh--------------hccC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGL--------------RSST 146 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------~~~~ 146 (279)
..++. .+++|++|++++|.+..+|.. +++|+.|++++|.+.+... ....+ ..++
T Consensus 114 -~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~~~~ 181 (622)
T 3g06_A 114 -THLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPMLPS 181 (622)
T ss_dssp -CCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCCT
T ss_pred -CCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCcccCC
Confidence 23332 456788888888888777754 3778888888877653221 11111 1236
Q ss_pred cccceeccCCCCccc-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCC
Q 044855 147 SLEGLDISGNIPNWI-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRI 219 (279)
Q Consensus 147 ~L~~l~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~ 219 (279)
+|+.|++++|-...+ ...++|+.|++++|.++. ++. .+++|+.|++++|.+.. +|+.|++++|.+.. +
T Consensus 182 ~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~-l 256 (622)
T 3g06_A 182 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-L 256 (622)
T ss_dssp TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-C
T ss_pred CCcEEECCCCCCCCCCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc-C
Confidence 667777776633222 234667777777777665 332 24778888888887764 78888888888863 4
Q ss_pred chhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCc
Q 044855 220 PYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275 (279)
Q Consensus 220 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 275 (279)
|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus 257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 43 5678999999999988 6788888899999999999999888777665443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.2e-25 Score=182.40 Aligned_cols=234 Identities=21% Similarity=0.231 Sum_probs=185.1
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++..|.+|+.+++|++|++++|.+++..+ |..+++|++|++++|.+.+ +...++|++|++++|..
T Consensus 40 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI 111 (317)
T ss_dssp ECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCC
T ss_pred ECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCcc
Confidence 588999998888999999999999999999985543 8999999999999998863 22448999999998874
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchh-hccCcccceeccCCCC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGL-RSSTSLEGLDISGNIP 158 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~ 158 (279)
. ..+. ..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+.. +..+ ..+++|++|+++++-.
T Consensus 112 ~-~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 112 S-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------FAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp S-EEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE------GGGGGGGTTTCCEEECTTSCC
T ss_pred C-CcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc------HHHHhhccCcCCEEECCCCcC
Confidence 3 3333 336789999999999977754 6777899999999999887432 2333 4678999999998843
Q ss_pred cc---ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855 159 NW---IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR 235 (279)
Q Consensus 159 ~~---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (279)
.. ...+++|+.|++++|.++. .+..+..+++|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~---------------~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 182 YDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV---------------LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC---------------EECTTCCCCTTCCEEECT
T ss_pred cccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc---------------chhhHhhcCCCCCEEEcc
Confidence 22 3347999999999999998 4445888888887777666543 245667788999999999
Q ss_pred CCccc-ccCChhhhcccCCcEEEccCCE-eeeecC
Q 044855 236 GNSLQ-GHIPNELCQLAKLRIMDLSNNI-FSGSIP 268 (279)
Q Consensus 236 ~n~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~p 268 (279)
+|++. +..+..+..++.|+.+++.+|. +++..|
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 99998 6778888889999999988554 554444
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=4.4e-24 Score=182.67 Aligned_cols=240 Identities=20% Similarity=0.274 Sum_probs=162.2
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcC-------------cEEeccCcccCcccchhhhccc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSL-------------EYLDLSSINFQGTFSINSLANH 67 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~~~~~~~~~ 67 (279)
++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+.+| ++|++++|.+++ ++. ..
T Consensus 17 ~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~----~~ 90 (454)
T 1jl5_A 17 LRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE----LP 90 (454)
T ss_dssp ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS----CC
T ss_pred hcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC----Cc
Confidence 4678888 6889999999999999999999998999988888765 899999998873 221 23
Q ss_pred ccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCc
Q 044855 68 SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTS 147 (279)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (279)
++|++|++++|.... ++. ..++|++|++++|.+..++.. .++|++|++++|.+.+ ++ .+..+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-------lp-~~~~l~~ 154 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-------LP-ELQNSSF 154 (454)
T ss_dssp TTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-------CC-CCTTCTT
T ss_pred CCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-------Cc-ccCCCCC
Confidence 688999998876433 432 247888899988888776642 2678889998887762 23 4777888
Q ss_pred ccceeccCCCCccc-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCc
Q 044855 148 LEGLDISGNIPNWI-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIP 220 (279)
Q Consensus 148 L~~l~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~ 220 (279)
|++++++++-...+ ....+|++|++++|.+++ .| .+..+++|+.|++++|.+.. +|+.|++++|.+. .+|
T Consensus 155 L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC
T ss_pred CCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc
Confidence 88888887733322 223588889998888877 45 57888888888888887764 7888888888886 455
Q ss_pred hhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccc
Q 044855 221 YQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCL 271 (279)
Q Consensus 221 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 271 (279)
.+..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|+.+
T Consensus 232 -~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~-~l~~~~ 276 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT-DLPELP 276 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS-CCCCCC
T ss_pred -ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc-ccCccc
Confidence 37778888888888888774 3322 245666666666655 244433
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=1e-26 Score=199.90 Aligned_cols=262 Identities=23% Similarity=0.203 Sum_probs=114.9
Q ss_pred CCCCCcCcCCCCcccc-CCC----CccEEEeeCCcccc----cCCccccCCCcCcEEeccCcccCcccchh---h-hccc
Q 044855 1 DLSSNNFEGHLPQCLN-HLT----HLKVLDIFNNQLSG----NFPSTLTNFTSLEYLDLSSINFQGTFSIN---S-LANH 67 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~-~l~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~-~~~~ 67 (279)
||++|.+.+..+..+. .++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..... . ....
T Consensus 62 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred eCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 3555555543333222 233 46666666666652 33555666666666666666654211110 0 1123
Q ss_pred ccceeeeecCCcccccc---cCCCCCCCCceeEEEecCCcCccc-----Chhhh-cCCCccEEEeeCCcccccCCCCCcC
Q 044855 68 SKLEVLLLSSGSNMLQV---KTESWHPTSQLKVLKLSDCQLHVI-----PSFLL-QQDHLKFLDLSHNKLVGNFPICGKM 138 (279)
Q Consensus 68 ~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 138 (279)
++|++|++++|...... ....+..+++|++|++++|.+... ...+. ..++|++|++++|.+..... ..+
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l 219 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDL 219 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHH
Confidence 45666666555432211 112233445555555555554221 11111 23455555555554432100 012
Q ss_pred cchhhccCcccceeccCCCCc----------cccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCc--
Q 044855 139 DDGLRSSTSLEGLDISGNIPN----------WIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLS-- 202 (279)
Q Consensus 139 ~~~~~~~~~L~~l~l~~~~~~----------~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~-- 202 (279)
+..+..+++|++|+++++-.. .+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 233444455555555544111 111344555555555544432 2333344455555555555442
Q ss_pred -------------ccceEEEeecCccCCC----CchhhhcCcCCcEEEccCCcccccCChhhhc-----ccCCcEEEccC
Q 044855 203 -------------SKLITLDLRDNKFFGR----IPYQINELSNLHVLLLRGNSLQGHIPNELCQ-----LAKLRIMDLSN 260 (279)
Q Consensus 203 -------------~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~ 260 (279)
.+|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|+.|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 1445555555544332 2223333444444444444444333332221 33444444444
Q ss_pred CEee
Q 044855 261 NIFS 264 (279)
Q Consensus 261 n~l~ 264 (279)
|.++
T Consensus 380 n~i~ 383 (461)
T 1z7x_W 380 CDVS 383 (461)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 4444
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2.7e-26 Score=197.29 Aligned_cols=263 Identities=22% Similarity=0.185 Sum_probs=174.2
Q ss_pred CCCCCcCcC----CCCccccCCCCccEEEeeCCcccccCCccc-----cCCCcCcEEeccCcccCcccc---hhhhcccc
Q 044855 1 DLSSNNFEG----HLPQCLNHLTHLKVLDIFNNQLSGNFPSTL-----TNFTSLEYLDLSSINFQGTFS---INSLANHS 68 (279)
Q Consensus 1 ~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~ 68 (279)
||++|.++. .++.++..+++|++|++++|.+++..+..+ ...++|++|++++|.+.+... ...+..++
T Consensus 91 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC
Confidence 467777774 447778888888888888888764433332 225678888888887764221 23456678
Q ss_pred cceeeeecCCcccccccCCCC-----CCCCceeEEEecCCcCcc-----cChhhhcCCCccEEEeeCCcccccCCCCCcC
Q 044855 69 KLEVLLLSSGSNMLQVKTESW-----HPTSQLKVLKLSDCQLHV-----IPSFLLQQDHLKFLDLSHNKLVGNFPICGKM 138 (279)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 138 (279)
+|++|++++|....... ..+ ...++|++|++++|.++. ++..+..+++|++|++++|.+.+... ..+
T Consensus 171 ~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--~~l 247 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM--AEL 247 (461)
T ss_dssp TCCEEECCSSBCHHHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH--HHH
T ss_pred CCCEEECcCCCcchHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH--HHH
Confidence 88888888776422211 111 135578888888887754 46666778888888888887653210 001
Q ss_pred cc-hhhccCcccceeccCCC---------CccccCCCCCcEEEccccEeeeecccccc-----CCCCccEEeccCCcCcc
Q 044855 139 DD-GLRSSTSLEGLDISGNI---------PNWIGNISTLRVLLMSKNYLEANIPVQLN-----HLKSLELIDIFENSLSS 203 (279)
Q Consensus 139 ~~-~~~~~~~L~~l~l~~~~---------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~l~l~~~~~~~ 203 (279)
.. ....+++|++|++++|- +..+..+++|+.|++++|.+....+..+. ..++|+.|++++|.+..
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 11 12246788888888772 23344578888888888877653333322 23688888888887752
Q ss_pred --------------cceEEEeecCccCCCCchhhhc-----CcCCcEEEccCCcccc----cCChhhhcccCCcEEEccC
Q 044855 204 --------------KLITLDLRDNKFFGRIPYQINE-----LSNLHVLLLRGNSLQG----HIPNELCQLAKLRIMDLSN 260 (279)
Q Consensus 204 --------------~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~ 260 (279)
+|+.|++++|.+.+..+..+.. .++|+.|++++|.+++ .++..+..+++|+.|++++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 7888888888876554444432 5688888888888876 5667777788888888888
Q ss_pred CEeeee
Q 044855 261 NIFSGS 266 (279)
Q Consensus 261 n~l~~~ 266 (279)
|++++.
T Consensus 408 N~i~~~ 413 (461)
T 1z7x_W 408 NCLGDA 413 (461)
T ss_dssp SSCCHH
T ss_pred CCCCHH
Confidence 888754
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.7e-23 Score=166.41 Aligned_cols=211 Identities=20% Similarity=0.308 Sum_probs=152.4
Q ss_pred cccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855 14 CLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS 93 (279)
Q Consensus 14 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (279)
.+..+++|+.|++.++.++ ..+ .+..+++|++|++++|.+.+. ..+..+++|++|++++|. ...++...+..++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQ-LQSLPNGVFDKLT 109 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCc-cCccChhHhcCCc
Confidence 3456788888888888776 333 477788888888888877632 356777788888887775 3455555667777
Q ss_pred ceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEc
Q 044855 94 QLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLM 172 (279)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l 172 (279)
+|++|++++|.+..++.. +..+++|+.|++++|.+.+. .+..++.+++|+.|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL-------------------------PKGVFDKLTNLTELDL 164 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------------------CTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc-------------------------CHHHhccCccCCEEEC
Confidence 888888888877666553 56677788888887766521 1234567788888888
Q ss_pred cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC
Q 044855 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK 252 (279)
Q Consensus 173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 252 (279)
++|.+++..+..+..+++|+.|++++ |++.+..+..+..+++|+.|++++|++. +.++.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~--------------N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~ 223 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQ--------------NQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPG 223 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS--------------SCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCC--------------CcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcH
Confidence 88888875565667777666555544 4454556666788899999999999887 34667
Q ss_pred CcEEEccCCEeeeecCccccCCcc
Q 044855 253 LRIMDLSNNIFSGSIPSCLGNVSF 276 (279)
Q Consensus 253 L~~L~l~~n~l~~~~p~~~~~~~~ 276 (279)
++.+++..|.++|.+|..++.++.
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHhCCCcccCcccccCC
Confidence 888899999999999988887654
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.3e-22 Score=162.23 Aligned_cols=205 Identities=25% Similarity=0.261 Sum_probs=141.5
Q ss_pred ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855 13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT 92 (279)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (279)
..+++++++++++++++.++ .+|..+. +++++|++++|.+. ......+..+++|++|++++|... .++.. ..+
T Consensus 4 C~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l 76 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTL 76 (290)
T ss_dssp SEEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCC
T ss_pred ccccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccC-cccCC--CCC
Confidence 45788999999999999998 5665553 78999999999987 555577889999999999988643 33332 678
Q ss_pred CceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEc
Q 044855 93 SQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLM 172 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l 172 (279)
++|++|++++|.+..+|..+..+++|+.|++++|.+.... +..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-------------------------~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-------------------------LGALRGLGELQELYL 131 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-------------------------SSTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC-------------------------HHHHcCCCCCCEEEC
Confidence 8999999999999999988888999999999999876322 234555566666666
Q ss_pred cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccC
Q 044855 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAK 252 (279)
Q Consensus 173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 252 (279)
++|.++...+..+..+++|+.|++++|.+ .+..+..+..+++|+.|++++|+++ .+|..+...++
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------------~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~ 196 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNL--------------TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCC--------------SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcC--------------CccCHHHhcCcCCCCEEECCCCcCC-ccChhhccccc
Confidence 66666654444555555555444444433 2233334455556666666666655 44555555555
Q ss_pred CcEEEccCCEee
Q 044855 253 LRIMDLSNNIFS 264 (279)
Q Consensus 253 L~~L~l~~n~l~ 264 (279)
|+.+++++|++.
T Consensus 197 L~~l~L~~Np~~ 208 (290)
T 1p9a_G 197 LPFAFLHGNPWL 208 (290)
T ss_dssp CSEEECCSCCBC
T ss_pred CCeEEeCCCCcc
Confidence 666666666554
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2e-22 Score=161.13 Aligned_cols=201 Identities=21% Similarity=0.312 Sum_probs=108.5
Q ss_pred CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855 20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK 99 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 99 (279)
+.++++++++.++ .+|..+. +++++|++++|.+. ..+...+..+++|++|++++|. +..++...+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence 4566777777766 4554332 56777777777665 3444456666777777776664 3345555566677777777
Q ss_pred ecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEee
Q 044855 100 LSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178 (279)
Q Consensus 100 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~ 178 (279)
+++|.+..++. .+..+++|++|++++|.+.... +..++.+++|+.|++++|.++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-------------------------PRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-------------------------HHHhCcCcCCCEEECCCCcCC
Confidence 77777766654 3455677777777776654221 122344455555555555555
Q ss_pred eeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEc
Q 044855 179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDL 258 (279)
Q Consensus 179 ~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 258 (279)
...+..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~--------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQ--------------LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC--------------CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccCHhHccCCcccceeEecCCc--------------CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 4333334444444433333332 22223333444455555555555554333334444455555555
Q ss_pred cCCEee
Q 044855 259 SNNIFS 264 (279)
Q Consensus 259 ~~n~l~ 264 (279)
++|++.
T Consensus 213 ~~N~~~ 218 (270)
T 2o6q_A 213 QENPWD 218 (270)
T ss_dssp CSSCBC
T ss_pred cCCCee
Confidence 555544
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=8.8e-24 Score=182.44 Aligned_cols=225 Identities=21% Similarity=0.218 Sum_probs=180.1
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+.+..|.+|+.+++|++|+|++|.+++..+ |..+++|++|++++|.+.+. ...++|+.|++++|..
T Consensus 40 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNI 111 (487)
T ss_dssp ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------EECTTCCEEECCSSCC
T ss_pred EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------CCCCCcCEEECcCCcC
Confidence 588999999888999999999999999999986554 89999999999999988632 2338999999999875
Q ss_pred cccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhh-ccCcccceeccCCCC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLR-SSTSLEGLDISGNIP 158 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~ 158 (279)
.. .+. ..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+.. +..+. .+++|+.|++++|-.
T Consensus 112 ~~-~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 112 SR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------FAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CC-EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE------GGGGGGGTTTCCEEECTTSCC
T ss_pred CC-CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC------hHHHhhhCCcccEEecCCCcc
Confidence 43 333 2468899999999999766 457778999999999999887432 34444 689999999999843
Q ss_pred cc---ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855 159 NW---IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR 235 (279)
Q Consensus 159 ~~---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (279)
.. ...+++|+.|++++|.+++ .|..+..+++|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~---------------~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 182 YDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV---------------LIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC---------------EECTTCCCCTTCCEEECT
T ss_pred ccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc---------------ccchhhccCCCCCEEEcC
Confidence 22 3458999999999999998 4445888888887777666543 255567788999999999
Q ss_pred CCccc-ccCChhhhcccCCcEEEcc
Q 044855 236 GNSLQ-GHIPNELCQLAKLRIMDLS 259 (279)
Q Consensus 236 ~n~~~-~~~~~~~~~~~~L~~L~l~ 259 (279)
+|++. +..+..+..++.++.++++
T Consensus 246 ~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcCcchHHHHHhCCCCcEEecc
Confidence 99987 5677778888888888775
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.2e-22 Score=161.44 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=156.8
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.++...+.+|+++++|++|++++|.+++..+..|..+++|++|++++|.+. ......+..+++|++|++++|..
T Consensus 34 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCc
Confidence 57899999888889999999999999999999777778999999999999999987 45557789999999999998864
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcc--cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHV--IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP 158 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 158 (279)
.......+..+++|++|++++|.+.. +|..+..+++|+.|++++|.+.+..+ ..+..+..
T Consensus 113 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~----------- 174 (276)
T 2z62_A 113 -ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC------TDLRVLHQ----------- 174 (276)
T ss_dssp -CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG------GGGHHHHT-----------
T ss_pred -cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH------HHhhhhhh-----------
Confidence 44555568899999999999999976 67889999999999999998763221 22222222
Q ss_pred ccccCCCCCc-EEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855 159 NWIGNISTLR-VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237 (279)
Q Consensus 159 ~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 237 (279)
++.+. .|++++|.++...+..+. ..+|+ .|++++|++.+..+..+..+++|+.|++++|
T Consensus 175 -----L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~--------------~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 175 -----MPLLNLSLDLSLNPMNFIQPGAFK-EIRLK--------------ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp -----CTTCCEEEECCSSCCCEECTTSSC-SCCEE--------------EEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred -----ccccceeeecCCCcccccCccccC-CCccc--------------EEECCCCceeecCHhHhcccccccEEEccCC
Confidence 22222 788888888775444433 23444 5555556655555556788899999999999
Q ss_pred cccccC
Q 044855 238 SLQGHI 243 (279)
Q Consensus 238 ~~~~~~ 243 (279)
+++...
T Consensus 235 ~~~c~c 240 (276)
T 2z62_A 235 PWDCSC 240 (276)
T ss_dssp CBCCCT
T ss_pred cccccC
Confidence 988543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=3.5e-23 Score=169.01 Aligned_cols=198 Identities=24% Similarity=0.252 Sum_probs=103.3
Q ss_pred CCCCccEEEeeCCcccccCCccc--cCCCcCcEEeccCcccCcccchhhhccc-----ccceeeeecCCcccccccCCCC
Q 044855 17 HLTHLKVLDIFNNQLSGNFPSTL--TNFTSLEYLDLSSINFQGTFSINSLANH-----SKLEVLLLSSGSNMLQVKTESW 89 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~ 89 (279)
++++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. + ..+..+ ++|++|++++|. +...+...+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence 35555555555555554444433 4555555555555555432 1 222222 455555555444 233333344
Q ss_pred CCCCceeEEEecCCcCcc---cChhh--hcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCC
Q 044855 90 HPTSQLKVLKLSDCQLHV---IPSFL--LQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNI 164 (279)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 164 (279)
..+++|++|++++|.+.. ++..+ ..+++|++|++++|.+..... .... .+..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-------------------~~~~l 227 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG---VCSA-------------------LAAAR 227 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---HHHH-------------------HHHTT
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH---HHHH-------------------HHhcC
Confidence 455555555555554321 12222 344555555555554431100 0001 12244
Q ss_pred CCCcEEEccccEeeeecc-ccccCCCCccEEeccCCcCcc-------cceEEEeecCccCCCCchhhhcCcCCcEEEccC
Q 044855 165 STLRVLLMSKNYLEANIP-VQLNHLKSLELIDIFENSLSS-------KLITLDLRDNKFFGRIPYQINELSNLHVLLLRG 236 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 236 (279)
++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.. +|+.|++++|++.+. |. +..+++|+.|++++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 555666666655555332 234445556666665555432 677888888888665 54 88999999999999
Q ss_pred Ccccc
Q 044855 237 NSLQG 241 (279)
Q Consensus 237 n~~~~ 241 (279)
|++++
T Consensus 306 N~l~~ 310 (312)
T 1wwl_A 306 NPFLD 310 (312)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 99985
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.6e-21 Score=154.67 Aligned_cols=197 Identities=21% Similarity=0.283 Sum_probs=152.1
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
|++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 22 ~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~- 96 (270)
T 2o6q_A 22 DCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK- 96 (270)
T ss_dssp ECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSC-
T ss_pred EccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCc-
Confidence 46677888 4555443 68999999999999766678999999999999999987 5565677889999999999886
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN 159 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 159 (279)
+..++...+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.... +.
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------------------~~ 151 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-------------------------KG 151 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------TT
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-------------------------Hh
Confidence 456667778899999999999999987765 4678999999999999876221 23
Q ss_pred cccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcc
Q 044855 160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSL 239 (279)
Q Consensus 160 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (279)
.+..+++|+.|++++|.++...+..+..+++|+.|++++| ++.+..+..+..+++|+.|++++|++
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------------~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN--------------QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS--------------CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC--------------cCCcCCHHHhccccCCCEEEecCCCe
Confidence 3566778888888888887755556777776665555444 34344455567788888888888887
Q ss_pred cc
Q 044855 240 QG 241 (279)
Q Consensus 240 ~~ 241 (279)
..
T Consensus 218 ~c 219 (270)
T 2o6q_A 218 DC 219 (270)
T ss_dssp CC
T ss_pred eC
Confidence 53
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.1e-24 Score=178.04 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=151.3
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCC----ccccCCC-cCcEEeccCcccCcccchhhhccc-----ccc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFP----STLTNFT-SLEYLDLSSINFQGTFSINSLANH-----SKL 70 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-----~~L 70 (279)
+|++|.+++.+|..+...++|++|++++|.+++..+ ..|..++ +|++|++++|.+.+. ....+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCc
Confidence 478899998888887777889999999999986665 6788888 999999999988743 23334333 889
Q ss_pred eeeeecCCcccccccC---CCCCCC-CceeEEEecCCcCcccCh-----hhhc-CCCccEEEeeCCcccccCCCCCcCcc
Q 044855 71 EVLLLSSGSNMLQVKT---ESWHPT-SQLKVLKLSDCQLHVIPS-----FLLQ-QDHLKFLDLSHNKLVGNFPICGKMDD 140 (279)
Q Consensus 71 ~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~ 140 (279)
++|++++|......+. ..+..+ ++|++|++++|.++..+. .+.. .++|++|++++|.+.+... ..+..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~ 160 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--DELIQ 160 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--HHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--HHHHH
Confidence 9999998874322211 123344 789999999998866553 2333 3589999999988763321 12222
Q ss_pred hhhccC-cccceeccCCCCc---------cccCC-CCCcEEEccccEeeee----ccccccC-CCCccEEeccCCcCccc
Q 044855 141 GLRSST-SLEGLDISGNIPN---------WIGNI-STLRVLLMSKNYLEAN----IPVQLNH-LKSLELIDIFENSLSSK 204 (279)
Q Consensus 141 ~~~~~~-~L~~l~l~~~~~~---------~~~~~-~~L~~L~l~~~~l~~~----~~~~l~~-~~~L~~l~l~~~~~~~~ 204 (279)
.+...+ +|++|++++|-.. .+... ++|+.|++++|.++.. ++..+.. .++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~-------------- 226 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH-------------- 226 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT--------------
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC--------------
Confidence 333333 5666666655211 12223 3566666666655442 1222222 234
Q ss_pred ceEEEeecCccCCCCc----hhhhcCcCCcEEEccCCccccc-------CChhhhcccCCcEEEccCCEeeee
Q 044855 205 LITLDLRDNKFFGRIP----YQINELSNLHVLLLRGNSLQGH-------IPNELCQLAKLRIMDLSNNIFSGS 266 (279)
Q Consensus 205 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~ 266 (279)
|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+. .+..+..+++|+.||+++|++.+.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4455555555544433 2234556677777777763322 122344556667777777776544
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=5.7e-21 Score=168.54 Aligned_cols=221 Identities=22% Similarity=0.233 Sum_probs=163.3
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
.+++.|+++++.++ .+|..+. ++|++|++++|.+. .++. .+++|++|++++|.. ..++. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQL-TSLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCC-SCCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcC-CcCCC----CCCCCCEE
Confidence 46899999999998 7777664 89999999999987 3332 578999999999874 34443 67899999
Q ss_pred EecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc-cCC-------------
Q 044855 99 KLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI-GNI------------- 164 (279)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~------------- 164 (279)
++++|.+..++. .+++|+.|++++|.+.... . .+++|++|++++|-...+ ...
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp-------~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLP-------V---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECCSSCCSCCC-------C---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred ECcCCcCCCCCC---CCCCcCEEECCCCCCCcCC-------C---CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCC
Confidence 999999988887 5688999999999887422 2 136788888877622221 112
Q ss_pred -------CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcc------cceEEEeecCccCCCCchhhhcCcCCcE
Q 044855 165 -------STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSS------KLITLDLRDNKFFGRIPYQINELSNLHV 231 (279)
Q Consensus 165 -------~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 231 (279)
++|+.|++++|.++. +|. ..++|+.|++++|.+.. +|+.|++++|.+.+ +| ..+++|+.
T Consensus 174 ~~l~~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 174 TSLPMLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKE 245 (622)
T ss_dssp SCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred CCCcccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence 455555555555544 222 23556666666665543 68888888888765 44 45688999
Q ss_pred EEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 232 LLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..++.|+
T Consensus 246 L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 246 LMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred EECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 999999988 4444 5688999999999999 8899999988876
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.3e-21 Score=159.31 Aligned_cols=194 Identities=20% Similarity=0.260 Sum_probs=119.8
Q ss_pred ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855 15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ 94 (279)
Q Consensus 15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (279)
++.+++|++|+++++.++ .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|... ..+ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~--~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP--LKNLTKITELELSGNPLK-NVS--AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh--HccCCCCCEEEccCCcCC-Cch--hhcCCCC
Confidence 456888888888888887 444 577888889999988887632 22 777888888888877632 332 4677888
Q ss_pred eeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccc
Q 044855 95 LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSK 174 (279)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~ 174 (279)
|++|++++|.+..++. +..+++|+.|++++|.+.+.. .++.+++|+.|++++
T Consensus 109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS---------------------------PLAGLTNLQYLSIGN 160 (308)
T ss_dssp CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG---------------------------GGGGCTTCCEEECCS
T ss_pred CCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc---------------------------cccCCCCccEEEccC
Confidence 8888888888877654 677788888888887765211 134445555555555
Q ss_pred cEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCc
Q 044855 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLR 254 (279)
Q Consensus 175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 254 (279)
|.+++. +. +..+++|+.|++++|.+. +. + .+..+++|+.|++++|++++.. .+..+++|+
T Consensus 161 n~l~~~-~~-l~~l~~L~~L~l~~n~l~--------------~~-~-~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 161 AQVSDL-TP-LANLSKLTTLKADDNKIS--------------DI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLF 220 (308)
T ss_dssp SCCCCC-GG-GTTCTTCCEEECCSSCCC--------------CC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred CcCCCC-hh-hcCCCCCCEEECCCCccC--------------cC-h-hhcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence 555542 22 445555544444433322 11 1 1444555555555555555332 244555555
Q ss_pred EEEccCCEee
Q 044855 255 IMDLSNNIFS 264 (279)
Q Consensus 255 ~L~l~~n~l~ 264 (279)
.|++++|+++
T Consensus 221 ~L~l~~N~i~ 230 (308)
T 1h6u_A 221 IVTLTNQTIT 230 (308)
T ss_dssp EEEEEEEEEE
T ss_pred EEEccCCeee
Confidence 5555555554
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5e-24 Score=179.08 Aligned_cols=243 Identities=16% Similarity=0.152 Sum_probs=155.2
Q ss_pred CCCccccCCCCccEEEeeCCcccccCC----ccccCCCcCcEEeccCcccCc---ccch------hhhcccccceeeeec
Q 044855 10 HLPQCLNHLTHLKVLDIFNNQLSGNFP----STLTNFTSLEYLDLSSINFQG---TFSI------NSLANHSKLEVLLLS 76 (279)
Q Consensus 10 ~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~---~~~~------~~~~~~~~L~~L~l~ 76 (279)
.++.++..+++|++|++++|.+....+ ..+..+++|++|++++|.+.. ..+. ..+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456677788889999999988875433 346788899999998875431 1111 123677888888888
Q ss_pred CCccccc---ccCCCCCCCCceeEEEecCCcCc-----ccChhhhcC---------CCccEEEeeCCcccccCCCCCcCc
Q 044855 77 SGSNMLQ---VKTESWHPTSQLKVLKLSDCQLH-----VIPSFLLQQ---------DHLKFLDLSHNKLVGNFPICGKMD 139 (279)
Q Consensus 77 ~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~---------~~L~~L~l~~~~~~~~~~~~~~~~ 139 (279)
+|..... .....+..+++|++|++++|.+. .++..+..+ ++|+.|++++|.+..... ..+.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~ 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--KEWA 180 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--HHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH--HHHH
Confidence 7764331 12234566778888888888773 233334444 788888888877642110 0122
Q ss_pred chhhccCcccceeccCCCCc----------cccCCCCCcEEEccccEee----eeccccccCCCCccEEeccCCcCcccc
Q 044855 140 DGLRSSTSLEGLDISGNIPN----------WIGNISTLRVLLMSKNYLE----ANIPVQLNHLKSLELIDIFENSLSSKL 205 (279)
Q Consensus 140 ~~~~~~~~L~~l~l~~~~~~----------~~~~~~~L~~L~l~~~~l~----~~~~~~l~~~~~L~~l~l~~~~~~~~L 205 (279)
..+..+++|+.|++++|-.. .+..+++|+.|++++|.++ ..++..+..+++|+.|++++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~------- 253 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND------- 253 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT-------
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC-------
Confidence 34556667777777666322 4556667777777777664 23444555666666555554
Q ss_pred eEEEeecCccCCC----Cchhhhc--CcCCcEEEccCCcccc----cCChhh-hcccCCcEEEccCCEeeeecC
Q 044855 206 ITLDLRDNKFFGR----IPYQINE--LSNLHVLLLRGNSLQG----HIPNEL-CQLAKLRIMDLSNNIFSGSIP 268 (279)
Q Consensus 206 ~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~p 268 (279)
|.+.+. ++..+.. +++|+.|++++|.+++ .++..+ ..+++|+.|++++|++++..|
T Consensus 254 -------n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 254 -------CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp -------CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred -------CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 444333 3445533 7889999999999886 366666 557899999999999886553
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.7e-21 Score=152.91 Aligned_cols=198 Identities=16% Similarity=0.166 Sum_probs=123.5
Q ss_pred CccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEE
Q 044855 20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVL 98 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 98 (279)
++++|++++|.+++..+..|..+++|++|++++|. +. .++...+..+++|++|+++++.....++...|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 67777777777775555567777777777777775 54 44445566677777777766223445555566667777777
Q ss_pred EecCCcCcccChhhhcCCCcc---EEEeeCC-cccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCc-EEEcc
Q 044855 99 KLSDCQLHVIPSFLLQQDHLK---FLDLSHN-KLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLR-VLLMS 173 (279)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~-~L~l~ 173 (279)
++++|.+..+|. +..+++|+ .|++++| .+.... +..+..+++|+ .|+++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-------------------------~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-------------------------VNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-------------------------TTTTTTTBSSEEEEECC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcC-------------------------cccccchhcceeEEEcC
Confidence 777776666665 55555555 6677666 443111 23456667777 77777
Q ss_pred ccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCc-cCCCCchhhhcC-cCCcEEEccCCcccccCChhhhccc
Q 044855 174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNK-FFGRIPYQINEL-SNLHVLLLRGNSLQGHIPNELCQLA 251 (279)
Q Consensus 174 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~ 251 (279)
+|.++...+..+.. ++|+. |++++|+ +.+..+..+..+ ++|+.|++++|++++..+. .++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~--------------L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~ 226 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDA--------------VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLE 226 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEE--------------EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCT
T ss_pred CCCCcccCHhhcCC-CCCCE--------------EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hhc
Confidence 77776533333333 44444 4444442 433445566777 8888888888888743333 566
Q ss_pred CCcEEEccCCE
Q 044855 252 KLRIMDLSNNI 262 (279)
Q Consensus 252 ~L~~L~l~~n~ 262 (279)
+|+.|+++++.
T Consensus 227 ~L~~L~l~~~~ 237 (239)
T 2xwt_C 227 HLKELIARNTW 237 (239)
T ss_dssp TCSEEECTTC-
T ss_pred cCceeeccCcc
Confidence 78888887764
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4e-23 Score=170.37 Aligned_cols=239 Identities=17% Similarity=0.186 Sum_probs=160.9
Q ss_pred CccccCC--CCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCC
Q 044855 12 PQCLNHL--THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESW 89 (279)
Q Consensus 12 ~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 89 (279)
+..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+......+..+++|++|++++|..... ....+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHH
Confidence 3455555 7888888888888755554 557888888888888776332345667788888888888753322 23345
Q ss_pred CCCCceeEEEecCC-cCc--ccChhhhcCCCccEEEeeCC-cccccCCCCCcCcchhhccC-cccceeccCCC-------
Q 044855 90 HPTSQLKVLKLSDC-QLH--VIPSFLLQQDHLKFLDLSHN-KLVGNFPICGKMDDGLRSST-SLEGLDISGNI------- 157 (279)
Q Consensus 90 ~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~------- 157 (279)
..+++|++|++++| .++ .++..+..+++|++|++++| .+.+. .+...+..++ +|++|+++++-
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 66788888888888 564 35666777888888888887 65421 1234566677 78888887762
Q ss_pred -CccccCCCCCcEEEccccE-eeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEcc
Q 044855 158 -PNWIGNISTLRVLLMSKNY-LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLR 235 (279)
Q Consensus 158 -~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 235 (279)
+..+..+++|+.|++++|. ++...+..+..+++|+.|++++|. .+.+.....+..+++|+.|+++
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-------------DIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-------------TCCGGGGGGGGGCTTCCEEECT
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-------------CCCHHHHHHHhcCCCCCEEecc
Confidence 2334567788888888877 555455566666666666555542 1222223357789999999999
Q ss_pred CCcccccCChhhhcccCCcEEEccCCEeeeecCccccC
Q 044855 236 GNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGN 273 (279)
Q Consensus 236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 273 (279)
+| +++.....+. ..+..|++++|.+++..|..++.
T Consensus 281 ~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 281 GI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred Cc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 99 6544333332 23566668999999999987765
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=7.4e-21 Score=149.29 Aligned_cols=199 Identities=18% Similarity=0.262 Sum_probs=149.6
Q ss_pred cCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecC-CcCcccCh-h
Q 044855 34 NFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSD-CQLHVIPS-F 111 (279)
Q Consensus 34 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~ 111 (279)
.+|. + .++|++|++++|.+. .++...+..+++|++|++++|..+..++...|..+++|++|++++ |.++.++. .
T Consensus 25 ~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 5555 3 348999999999887 555567888899999999888656667777788888999999988 88877764 5
Q ss_pred hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCc---EEEcccc-EeeeeccccccC
Q 044855 112 LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLR---VLLMSKN-YLEANIPVQLNH 187 (279)
Q Consensus 112 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~l~~ 187 (279)
+..+++|+.|++++|.+.+ ++. +..+++|+ .|++++| .++...+..+..
T Consensus 101 f~~l~~L~~L~l~~n~l~~--------------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM--------------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EECCTTCCEEEEEEECCCS--------------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred hCCCCCCCEEeCCCCCCcc--------------------------ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 6678889999998887652 122 44555555 9999999 888866667888
Q ss_pred CCCcc-EEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc-ccccCChhhhcc-cCCcEEEccCCEee
Q 044855 188 LKSLE-LIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS-LQGHIPNELCQL-AKLRIMDLSNNIFS 264 (279)
Q Consensus 188 ~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~l~ 264 (279)
+++|+ .+++++|.+. ...+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|.++
T Consensus 154 l~~L~~~L~l~~n~l~--------------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT--------------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TBSSEEEEECCSCCCC--------------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred hhcceeEEEcCCCCCc--------------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 88877 7777666543 222334444 789999999995 987777888899 99999999999999
Q ss_pred eecCccccCCcccc
Q 044855 265 GSIPSCLGNVSFWR 278 (279)
Q Consensus 265 ~~~p~~~~~~~~l~ 278 (279)
+.-+..|.+++.|+
T Consensus 219 ~l~~~~~~~L~~L~ 232 (239)
T 2xwt_C 219 ALPSKGLEHLKELI 232 (239)
T ss_dssp CCCCTTCTTCSEEE
T ss_pred cCChhHhccCceee
Confidence 43334577766653
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1.6e-20 Score=151.45 Aligned_cols=193 Identities=22% Similarity=0.181 Sum_probs=146.4
Q ss_pred ccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCc
Q 044855 39 LTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHL 118 (279)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 118 (279)
+.+++++++++++++.++ .++... .+.++.|++++|.. ..+....+..+++|++|++++|.++.++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcC-CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 567888999999988876 333221 25778888877763 444455677788888888888887666544 567778
Q ss_pred cEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccC
Q 044855 119 KFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFE 198 (279)
Q Consensus 119 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 198 (279)
+.|++++|.+. .++..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~--------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 80 GTLDLSHNQLQ--------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp CEEECCSSCCS--------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC--------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 88888877664 1345567788999999999999886667788888777666655
Q ss_pred CcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 199 NSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 199 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
|. +.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|+.+...+.|+
T Consensus 134 N~--------------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 134 NE--------------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198 (290)
T ss_dssp SC--------------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred CC--------------CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCC
Confidence 54 44455667788999999999999999666667788999999999999999 8888777766654
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=159.10 Aligned_cols=227 Identities=20% Similarity=0.181 Sum_probs=158.6
Q ss_pred CCCccEEEeeCCcccccCCc---cccCCCcCcEEeccCcccCcccchhhh-cccccceeeeecCCccccccc---CCCCC
Q 044855 18 LTHLKVLDIFNNQLSGNFPS---TLTNFTSLEYLDLSSINFQGTFSINSL-ANHSKLEVLLLSSGSNMLQVK---TESWH 90 (279)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~ 90 (279)
...++.+.+.++.++..... .+..+++|++|++++|.+.+..+...+ ..+++|++|++++|......+ ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34478888888776532111 123457799999999988755543333 788999999999887543222 12334
Q ss_pred CCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc--------cc
Q 044855 91 PTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN--------WI 161 (279)
Q Consensus 91 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------~~ 161 (279)
.+++|++|++++|.+..++ ..+..+++|++|++++|.+.+.... .....+..+++|++|++++|-.. .+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL--MAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH--HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh--hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 6889999999999997665 5677889999999999986421100 01122356788999999988432 23
Q ss_pred cCCCCCcEEEccccEeeeeccccccCC---CCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855 162 GNISTLRVLLMSKNYLEANIPVQLNHL---KSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238 (279)
Q Consensus 162 ~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 238 (279)
+.+++|++|++++|.+++..|..+..+ ++|+ +|++++|++. .+|..+. ++|+.|++++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~--------------~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN--------------SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC--------------CEECCSSCCC-SCCSCCC--SCCSCEECCSCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCC--------------EEECCCCCCC-chhhhhc--CCCCEEECCCCc
Confidence 567899999999999988656666555 4555 5555555554 4555543 799999999999
Q ss_pred ccccCChhhhcccCCcEEEccCCEeee
Q 044855 239 LQGHIPNELCQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 239 ~~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (279)
+++. |. +..+++|+.|++++|+++.
T Consensus 284 l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 284 LNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9853 33 5778999999999999873
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=7.1e-20 Score=146.45 Aligned_cols=200 Identities=20% Similarity=0.220 Sum_probs=146.5
Q ss_pred CCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEE
Q 044855 42 FTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFL 121 (279)
Q Consensus 42 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 121 (279)
+..+..+++.++.+.+. .....+++|+.|+++++... .. ..+..+++|++|++++|.+..++ .+..+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEE
T ss_pred HHHHHHHHhcCcccccc---cccccccceeeeeeCCCCcc-cc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEE
Confidence 34555566666655433 34566788999999877632 22 34678899999999999987764 67788999999
Q ss_pred EeeCCcccccCCCCCcCcchhhccCcccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEec
Q 044855 122 DLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDI 196 (279)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l 196 (279)
++++|.+.+.. +..+..+++|++|+++++ .+..++.+++|+.|++++|.++...+..+..+++|+
T Consensus 91 ~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---- 160 (272)
T 3rfs_A 91 ILTGNQLQSLP------NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT---- 160 (272)
T ss_dssp ECTTSCCCCCC------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC----
T ss_pred ECCCCccCccC------hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC----
Confidence 99999876322 234566777777777766 123356677777777777777765555556666555
Q ss_pred cCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecC
Q 044855 197 FENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268 (279)
Q Consensus 197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 268 (279)
.|++++|++.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 161 ----------~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 161 ----------ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ----------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ----------EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 45555555555666677899999999999999998888888999999999999999997766
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=153.36 Aligned_cols=202 Identities=22% Similarity=0.191 Sum_probs=151.7
Q ss_pred CCCCccEEEeeCCcccccCCccc--cCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCcccccccCCCCCC
Q 044855 17 HLTHLKVLDIFNNQLSGNFPSTL--TNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNMLQVKTESWHP 91 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 91 (279)
.+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+..+++|++|++++|.. ...+...+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhcc
Confidence 45779999999999998888877 889999999999999875333 23445789999999998874 5666677889
Q ss_pred CCceeEEEecCCcCcc---cC--hhhhcCCCccEEEeeCCcccccCCCCCcCcc-hhhccCcccceeccCC-----CCcc
Q 044855 92 TSQLKVLKLSDCQLHV---IP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDD-GLRSSTSLEGLDISGN-----IPNW 160 (279)
Q Consensus 92 ~~~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~-----~~~~ 160 (279)
+++|++|++++|.+.. ++ ..+..+++|++|++++|.+.... .... .+..+++|++|++++| .|..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT----GVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----HHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----HHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 9999999999998632 32 23357899999999999875211 1111 2467899999999988 2444
Q ss_pred ccCC---CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855 161 IGNI---STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237 (279)
Q Consensus 161 ~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 237 (279)
+..+ ++|++|++++|.++. +|..+. ++|+ .|++++|++.+. +. +..+++|+.|++++|
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~--------------~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLR--------------VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCS--------------CEECCSCCCCSC-CC-TTSCCCCSCEECSST
T ss_pred HHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCC--------------EEECCCCcCCCC-ch-hhhCCCccEEECcCC
Confidence 5555 699999999999986 555442 4555 555555555543 32 577899999999999
Q ss_pred ccccc
Q 044855 238 SLQGH 242 (279)
Q Consensus 238 ~~~~~ 242 (279)
++++.
T Consensus 305 ~l~~~ 309 (310)
T 4glp_A 305 PFLVP 309 (310)
T ss_dssp TTSCC
T ss_pred CCCCC
Confidence 99753
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=3e-21 Score=159.08 Aligned_cols=225 Identities=18% Similarity=0.228 Sum_probs=164.5
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCccccc-CCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGN-FPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ .....+..+++|++|++++|.
T Consensus 76 ~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 76 RCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp ECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCB
T ss_pred EcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCC
Confidence 3677888866555 55799999999999998755 77788999999999999998863 334567789999999999984
Q ss_pred cccc-ccCCCCCCCCceeEEEecCC-cCcc--cChhhhcCC-CccEEEeeCCc--ccccCCCCCcCcchhhccCccccee
Q 044855 80 NMLQ-VKTESWHPTSQLKVLKLSDC-QLHV--IPSFLLQQD-HLKFLDLSHNK--LVGNFPICGKMDDGLRSSTSLEGLD 152 (279)
Q Consensus 80 ~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~ 152 (279)
.... .....+..+++|++|++++| .++. ++..+..++ +|++|++++|. +.+ ..++..+..+++|++|+
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-----~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-----SDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----HHHHHHHHHCTTCSEEE
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-----HHHHHHHhhCCCCCEEe
Confidence 3332 23344677899999999999 8854 667788899 99999999995 321 13345677899999999
Q ss_pred ccCCC------CccccCCCCCcEEEccccE-eeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhc
Q 044855 153 ISGNI------PNWIGNISTLRVLLMSKNY-LEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINE 225 (279)
Q Consensus 153 l~~~~------~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 225 (279)
++++. +..+..+++|+.|++++|. +.......+..+++|+.|++++| ++ +.....+.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~--------------~~~~~~l~- 292 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP--------------DGTLQLLK- 292 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC--------------TTCHHHHH-
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC--------------HHHHHHHH-
Confidence 99873 3456788999999999994 33322335677787777766655 22 22222222
Q ss_pred CcCCcEEEccCCcccccCChhhhc
Q 044855 226 LSNLHVLLLRGNSLQGHIPNELCQ 249 (279)
Q Consensus 226 ~~~L~~L~l~~n~~~~~~~~~~~~ 249 (279)
..+..|++++|.+++..|..+..
T Consensus 293 -~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 293 -EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -HHSTTSEESCCCSCCTTCSSCSS
T ss_pred -hhCcceEEecccCccccCCcccc
Confidence 23555567888888776665543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=3.3e-19 Score=140.90 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=98.2
Q ss_pred CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855 20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK 99 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 99 (279)
..++++++++.++ .+|..+. +++++|++++|.+. ......+..+++|++|++++|. +...+...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence 4456666666665 4444332 46666666666665 3333455666666666666654 3334445566667777777
Q ss_pred ecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEee
Q 044855 100 LSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLE 178 (279)
Q Consensus 100 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~ 178 (279)
+++|.++.++. .+..+++|+.|++++|.+.... +..+..+++|+.|++++|.++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------------------~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-------------------------SGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-------------------------hhHhccCCcccEEECcCCcCC
Confidence 77777765553 3456677777777776654211 122344555666666666655
Q ss_pred eeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccc
Q 044855 179 ANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQG 241 (279)
Q Consensus 179 ~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (279)
...+..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|++..
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQ--------------LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC--------------CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ccCHHHcCcCcCCCEEECCCCc--------------CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 5444445555544443333332 333334455555666666666666553
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=7.7e-22 Score=165.77 Aligned_cols=241 Identities=16% Similarity=0.158 Sum_probs=161.1
Q ss_pred EeeCCcccccCCccccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCccc--c-cccC------CCCCCC
Q 044855 25 DIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNM--L-QVKT------ESWHPT 92 (279)
Q Consensus 25 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~--~-~~~~------~~~~~~ 92 (279)
.+....+. .++..+..+++|++|++++|.+..... ...+..+++|++|++++|... . .++. ..+..+
T Consensus 15 ~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 15 AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp SCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 33333433 566778889999999999998874322 123668899999999886321 1 1111 123678
Q ss_pred CceeEEEecCCcCcc-----cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhcc---------CcccceeccCCCC
Q 044855 93 SQLKVLKLSDCQLHV-----IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSS---------TSLEGLDISGNIP 158 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---------~~L~~l~l~~~~~ 158 (279)
++|++|++++|.+.. ++..+..+++|+.|++++|.+....+ ..+...+..+ ++|++|++++|-.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--AKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH--HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH--HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 999999999998854 66778889999999999998753221 1122233333 6777777776632
Q ss_pred ---------ccccCCCCCcEEEccccEeee-----eccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhh
Q 044855 159 ---------NWIGNISTLRVLLMSKNYLEA-----NIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN 224 (279)
Q Consensus 159 ---------~~~~~~~~L~~L~l~~~~l~~-----~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 224 (279)
..+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.+... -...++..+.
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----------g~~~l~~~l~ 241 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----------GSSALAIALK 241 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----------HHHHHHHHGG
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----------HHHHHHHHHc
Confidence 234456677777777777652 1222555666666555554443210 0034566788
Q ss_pred cCcCCcEEEccCCccccc----CChhhhc--ccCCcEEEccCCEeee----ecCccc-cCCcccc
Q 044855 225 ELSNLHVLLLRGNSLQGH----IPNELCQ--LAKLRIMDLSNNIFSG----SIPSCL-GNVSFWR 278 (279)
Q Consensus 225 ~~~~L~~L~l~~n~~~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~p~~~-~~~~~l~ 278 (279)
.+++|+.|++++|.+++. ++..+.. +++|+.|++++|.+++ .+|..+ .+++.|+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 899999999999999866 4555533 8999999999999997 488766 5566654
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=4.6e-19 Score=146.83 Aligned_cols=119 Identities=17% Similarity=0.290 Sum_probs=74.8
Q ss_pred CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855 4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ 83 (279)
Q Consensus 4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 83 (279)
++.++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|.+.+.++...+.+++++..+....+..+..
T Consensus 18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 44555 444444 256777788777777444456777777888888777766555556666776666544443334556
Q ss_pred ccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeC
Q 044855 84 VKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSH 125 (279)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 125 (279)
++...|..+++|++|++++|.+..++. ......++..+++.+
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 666667777777777777777766554 233445566666654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=3.6e-19 Score=140.71 Aligned_cols=175 Identities=22% Similarity=0.224 Sum_probs=124.4
Q ss_pred ccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccC
Q 044855 68 SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSST 146 (279)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (279)
...+.++++++. ...++... .++++.|++++|.+..++. .+..+++|++|++++|.+.+.. +..+..++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS------AGVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC------TTTTTTCT
T ss_pred CCCeEEecCCCC-ccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC------HhHhccCC
Confidence 345667776554 33444322 2578899999998876654 5777888999999988876322 24456667
Q ss_pred cccceeccCC-----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCch
Q 044855 147 SLEGLDISGN-----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPY 221 (279)
Q Consensus 147 ~L~~l~l~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~ 221 (279)
+|++|+++++ .+..+..+++|+.|++++|.++...+..+..+++|+ .|++++|++.+..+.
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--------------~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK--------------ELRLNTNQLQSIPAG 149 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC--------------EEECCSSCCCCCCTT
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc--------------EEECcCCcCCccCHH
Confidence 7777777665 123455667777777777776664444455555555 555555656556666
Q ss_pred hhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855 222 QINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS 266 (279)
Q Consensus 222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (279)
.+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 788999999999999999977787899999999999999999865
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=4.4e-19 Score=144.35 Aligned_cols=180 Identities=19% Similarity=0.267 Sum_probs=131.7
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
+++++.+.. ++ ++..+++|++|++++|.+++ .+. +..+++|++|++++|.+.+. ..+..+++|++|++++|..
T Consensus 47 ~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 47 SAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp ECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC---GGGTTCTTCCEEECTTSCC
T ss_pred EeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc---hhhcCCCCCCEEECCCCCC
Confidence 367888875 34 68999999999999999984 444 89999999999999998743 3688899999999999874
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC--
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP-- 158 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-- 158 (279)
. .++ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+.+ +.. +..+++|+.|+++++-.
T Consensus 120 ~-~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 120 T-DVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-------LTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp C-CCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCC
T ss_pred C-Cch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-------Chh-hcCCCCCCEEECCCCccCc
Confidence 3 333 37889999999999999988775 7889999999999998762 112 55566666666665521
Q ss_pred -ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcC
Q 044855 159 -NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSL 201 (279)
Q Consensus 159 -~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~ 201 (279)
..+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+
T Consensus 188 ~~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 188 ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CGGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred ChhhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 12445566666666666665532 245555555555555443
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=9.3e-21 Score=157.77 Aligned_cols=228 Identities=18% Similarity=0.164 Sum_probs=160.7
Q ss_pred CCCCCcCcCCCC----ccccCCC-CccEEEeeCCcccccCCccccCC-----CcCcEEeccCcccCcccch---hhhccc
Q 044855 1 DLSSNNFEGHLP----QCLNHLT-HLKVLDIFNNQLSGNFPSTLTNF-----TSLEYLDLSSINFQGTFSI---NSLANH 67 (279)
Q Consensus 1 ~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~---~~~~~~ 67 (279)
||++|.+++..+ .++..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+.+.... ..+..+
T Consensus 28 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 107 (362)
T 3goz_A 28 DLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred EccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhC
Confidence 588999998777 7888999 99999999999997777777665 9999999999998743321 124445
Q ss_pred -ccceeeeecCCcccccccCC----CCCC-CCceeEEEecCCcCc-----ccChhhhcCC-CccEEEeeCCcccccCCCC
Q 044855 68 -SKLEVLLLSSGSNMLQVKTE----SWHP-TSQLKVLKLSDCQLH-----VIPSFLLQQD-HLKFLDLSHNKLVGNFPIC 135 (279)
Q Consensus 68 -~~L~~L~l~~~~~~~~~~~~----~~~~-~~~L~~L~l~~~~~~-----~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~ 135 (279)
++|++|++++|... ..... .+.. .++|++|++++|.++ .++..+...+ +|++|++++|.+.+..+
T Consensus 108 ~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-- 184 (362)
T 3goz_A 108 PFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC-- 184 (362)
T ss_dssp CTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--
T ss_pred CCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH--
Confidence 89999999999743 33222 2333 369999999999986 3445556665 89999999998874432
Q ss_pred CcCcchhhcc-CcccceeccCCCCc---------cccC-CCCCcEEEccccEeeeeccc----cccCCCCccEEeccCCc
Q 044855 136 GKMDDGLRSS-TSLEGLDISGNIPN---------WIGN-ISTLRVLLMSKNYLEANIPV----QLNHLKSLELIDIFENS 200 (279)
Q Consensus 136 ~~~~~~~~~~-~~L~~l~l~~~~~~---------~~~~-~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~l~l~~~~ 200 (279)
..+...+... ++|++|++++|-.. .+.. .++|+.|++++|.++...+. .+..+++|+.
T Consensus 185 ~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~------- 257 (362)
T 3goz_A 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT------- 257 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE-------
T ss_pred HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE-------
Confidence 1223344555 59999999988322 2333 46999999999998874442 3345555555
Q ss_pred CcccceEEEeecCccCCC-------CchhhhcCcCCcEEEccCCcccccCCh
Q 044855 201 LSSKLITLDLRDNKFFGR-------IPYQINELSNLHVLLLRGNSLQGHIPN 245 (279)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~n~~~~~~~~ 245 (279)
|++++|.+.+. ++..+..+++|+.|++++|++.+..+.
T Consensus 258 -------L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 258 -------VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp -------EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred -------EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 45555543222 223455678889999999998765333
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=9.1e-21 Score=167.71 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=70.2
Q ss_pred CCCCCcEEEccccEeeeeccccccC-CCCccEEecc----CCcCcc---------------cceEEEeecCc--cCCCCc
Q 044855 163 NISTLRVLLMSKNYLEANIPVQLNH-LKSLELIDIF----ENSLSS---------------KLITLDLRDNK--FFGRIP 220 (279)
Q Consensus 163 ~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~l~l~----~~~~~~---------------~L~~L~l~~~~--~~~~~~ 220 (279)
.+++|+.|++..+.++...+..+.. +++|+.|+++ .+.+++ +|+.|+++.|. +++...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 3566666666555555433434433 6677777764 233321 67777776543 333333
Q ss_pred hhh-hcCcCCcEEEccCCccccc-CChhhhcccCCcEEEccCCEeeee-cCccccCCcccc
Q 044855 221 YQI-NELSNLHVLLLRGNSLQGH-IPNELCQLAKLRIMDLSNNIFSGS-IPSCLGNVSFWR 278 (279)
Q Consensus 221 ~~~-~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~l~ 278 (279)
..+ ..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. ++.....++.|+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 333 3478888888888888764 344556788899999999987654 333334555554
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1e-18 Score=152.50 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=111.0
Q ss_pred CccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855 20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK 99 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 99 (279)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .++ ..+++|++|++++|... .++. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEE
Confidence 78888888888874 55544 377888888888776 333 44677888888777543 3443 333 788888
Q ss_pred ecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEcccc
Q 044855 100 LSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKN 175 (279)
Q Consensus 100 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~ 175 (279)
+++|.++.+|. .+++|+.|++++|.+.+. +. .+++|+.|++++| +|. +. ++|+.|++++|
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-------p~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNNQLTML-------PE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCC-------CC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred CCCCcCCCCCC---cCccccEEeCCCCccCcC-------CC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence 88887777776 567788888888776521 11 2344555555544 222 22 44555555555
Q ss_pred EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcc
Q 044855 176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQL 250 (279)
Q Consensus 176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 250 (279)
.++. +|. +.. +| ......|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 191 ~L~~-lp~-~~~--~L-------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLES-LPA-VPV--RN-------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCSS-CCC-CC-----------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCc-hhh-HHH--hh-------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4443 222 211 11 000001255666666654 355555567777777777777766666665554
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2e-20 Score=165.51 Aligned_cols=261 Identities=15% Similarity=0.078 Sum_probs=148.8
Q ss_pred CCCCccEEEeeCCcccccCCccccC-CCc-CcEEeccCccc-CcccchhhhcccccceeeeecCCcccccc---cCCCCC
Q 044855 17 HLTHLKVLDIFNNQLSGNFPSTLTN-FTS-LEYLDLSSINF-QGTFSINSLANHSKLEVLLLSSGSNMLQV---KTESWH 90 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 90 (279)
.+++|++|++++|.+++..+..+.. +++ |++|++++|.. ...........+++|++|++++|...... ......
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5677777777777665444444433 333 66666666641 11111122235667777777666431110 011223
Q ss_pred CCCceeEEEecCCcCc-----ccChhhhcCCCccEEEeeCCcccccC--------------------CCCCcCcchhhcc
Q 044855 91 PTSQLKVLKLSDCQLH-----VIPSFLLQQDHLKFLDLSHNKLVGNF--------------------PICGKMDDGLRSS 145 (279)
Q Consensus 91 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~~~~~~ 145 (279)
.+++|++|+++++.+. .++..+..+++|+.|++++|.+.+.. .........+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 4556666666666553 22333445666666666665543100 0001112233444
Q ss_pred CcccceeccCC----CCccccCCCCCcEEEccccEeeeecc-ccccCCCCccEEeccCCcCc-----------ccceEEE
Q 044855 146 TSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIP-VQLNHLKSLELIDIFENSLS-----------SKLITLD 209 (279)
Q Consensus 146 ~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~-----------~~L~~L~ 209 (279)
++|+.+++++. ++..+..+++|++|++++|.++.... ..+..+++|+.|+++++ +. .+|++|+
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEE
Confidence 55555555433 34455667888888888887654322 34578888888888733 22 2789999
Q ss_pred eec-----------CccCCCCc-hhhhcCcCCcEEEccCCcccccCChhhhc-ccCCcEEEcc----CCEeeee-----c
Q 044855 210 LRD-----------NKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPNELCQ-LAKLRIMDLS----NNIFSGS-----I 267 (279)
Q Consensus 210 l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~ 267 (279)
+++ +.+++... .....+++|+.|+++.+.+++..+..+.. +++|+.|+++ .|.+++. +
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 983 44443322 22356899999999888888777777765 8899999996 5567642 3
Q ss_pred CccccCCcccc
Q 044855 268 PSCLGNVSFWR 278 (279)
Q Consensus 268 p~~~~~~~~l~ 278 (279)
+..+..++.|+
T Consensus 429 ~~~~~~~~~L~ 439 (592)
T 3ogk_B 429 RSLLIGCKKLR 439 (592)
T ss_dssp HHHHHHCTTCC
T ss_pred HHHHHhCCCCC
Confidence 33455566554
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=3.5e-18 Score=150.58 Aligned_cols=175 Identities=21% Similarity=0.254 Sum_probs=106.9
Q ss_pred ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855 15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ 94 (279)
Q Consensus 15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (279)
+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|... .+ ..+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~l--~~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIK-DL--SSLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCC-CC--TTSTTCTT
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCC-CC--hhhccCCC
Confidence 345666777777777665 333 36667777777777776653221 556666666666665432 22 13555666
Q ss_pred eeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccc
Q 044855 95 LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSK 174 (279)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~ 174 (279)
|+.|++++|.+..++ .+..+++|+.|++++|.+.+ ...+..+++|+.|++++
T Consensus 111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~---------------------------l~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD---------------------------ITVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC---------------------------CGGGGSCTTCSEEECCS
T ss_pred CCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC---------------------------chhhcccCCCCEEECcC
Confidence 666666666665543 35556666666666655431 13456677888888888
Q ss_pred cEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855 175 NYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 243 (279)
Q Consensus 175 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (279)
|.+.+..+ +..+++|+.|++++|.+. + + ..+..+++|+.|++++|++.+..
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~--------------~-l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHIS--------------D-L-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCC--------------B-C-GGGTTCTTCSEEECCSEEEECCC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCC--------------C-C-hHHccCCCCCEEEccCCcCcCCc
Confidence 88776444 666776666555555433 2 2 24677888888888888877543
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.5e-18 Score=137.88 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=71.5
Q ss_pred ccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCc
Q 044855 15 LNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQ 94 (279)
Q Consensus 15 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (279)
++.+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|... ..+ .+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVK-DLS--SLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC-CGG--GGTTCTT
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCC-CCh--hhccCCC
Confidence 356777888888888776 333 36777888888888887763222 667777777777776532 222 2566777
Q ss_pred eeEEEecCCcCcccChhhhcCCCccEEEeeCCccc
Q 044855 95 LKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 129 (279)
|++|++++|.+..+ ..+..+++|+.|++++|.+.
T Consensus 114 L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred CCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCC
Confidence 77777777777665 34566777777777777654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=6e-18 Score=136.50 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=56.1
Q ss_pred ccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCc
Q 044855 39 LTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHL 118 (279)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 118 (279)
+..+++|++|++++|.+... ..+..+++|+.|++++|... .++. +..+++|++|++++|.+..++. +..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC---hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 45677788888888776532 24666777777777776533 2222 5667777777777777766553 6667777
Q ss_pred cEEEeeCCccc
Q 044855 119 KFLDLSHNKLV 129 (279)
Q Consensus 119 ~~L~l~~~~~~ 129 (279)
+.|++++|.+.
T Consensus 115 ~~L~L~~n~i~ 125 (291)
T 1h6t_A 115 KSLSLEHNGIS 125 (291)
T ss_dssp CEEECTTSCCC
T ss_pred CEEECCCCcCC
Confidence 77777777655
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.9e-18 Score=131.62 Aligned_cols=158 Identities=23% Similarity=0.263 Sum_probs=114.2
Q ss_pred CCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----C-CccccCCC
Q 044855 92 TSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----I-PNWIGNIS 165 (279)
Q Consensus 92 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~-~~~~~~~~ 165 (279)
.++|++|++++|.++.++.. +..+++|++|++++|.+.... ...+..+++|++|+++++ + +..+..++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP------NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC------hhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 45899999999998877764 567899999999998876322 234566777777777766 1 22345667
Q ss_pred CCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCCh
Q 044855 166 TLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPN 245 (279)
Q Consensus 166 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 245 (279)
+|++|++++|.++...+..+..+++|+. |++++|++.+..+..+..+++|+.|++++|++.
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~--------------L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKD--------------LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCE--------------EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCE--------------EECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 7777777777776644445566665554 455555555555556788899999999999876
Q ss_pred hhhcccCCcEEEccCCEeeeecCccccCCcc
Q 044855 246 ELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF 276 (279)
Q Consensus 246 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 276 (279)
+.++.|+.|++..|.++|.+|+.++.++.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35677889999999999999988887753
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=7e-18 Score=129.45 Aligned_cols=172 Identities=23% Similarity=0.213 Sum_probs=121.0
Q ss_pred CCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccc
Q 044855 3 SSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNML 82 (279)
Q Consensus 3 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 82 (279)
+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|++|++++|. +.
T Consensus 15 ~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~ 89 (208)
T 2o6s_A 15 YSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-LQ 89 (208)
T ss_dssp CSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred cCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc-CC
Confidence 455555 334333 468999999999998666667888999999999999887 4555667888999999998886 44
Q ss_pred cccCCCCCCCCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855 83 QVKTESWHPTSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI 161 (279)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 161 (279)
.++...+..+++|++|++++|.+..++.. +..+++|+.|++++|.+.+.. ...+..+++|+.++++++ .+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~------~~~~~~l~~L~~L~l~~N--~~~ 161 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP------DGVFDRLTSLQYIWLHDN--PWD 161 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSC--CBC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC------HHHhccCCCccEEEecCC--Cee
Confidence 56666678889999999999988777664 567889999999998776322 233455566666666655 223
Q ss_pred cCCCCCcEEEccccEeeeeccccccC
Q 044855 162 GNISTLRVLLMSKNYLEANIPVQLNH 187 (279)
Q Consensus 162 ~~~~~L~~L~l~~~~l~~~~~~~l~~ 187 (279)
+.+++|+.|+++.|.+++..|..++.
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 44555666666666555555544443
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.7e-17 Score=126.16 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=95.6
Q ss_pred cccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhc
Q 044855 65 ANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS 144 (279)
Q Consensus 65 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 144 (279)
..+++|+.|+++++... .++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~------------- 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSD------------- 103 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGG-------------
T ss_pred hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcc-------------
Confidence 33445555555544322 222 2444555555555555443332 344455555555555444311
Q ss_pred cCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhh
Q 044855 145 STSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQIN 224 (279)
Q Consensus 145 ~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 224 (279)
.+..++.+++|+.|++++|.++...+..+..+++|+.|++++|.. + ..++ .+.
T Consensus 104 ------------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~-------------i-~~~~-~l~ 156 (197)
T 4ezg_A 104 ------------KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-------------I-TDIM-PLK 156 (197)
T ss_dssp ------------GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB-------------C-CCCG-GGG
T ss_pred ------------cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC-------------c-cccH-hhc
Confidence 244567788888888888888776667777777777666655541 2 2344 678
Q ss_pred cCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeee
Q 044855 225 ELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 225 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (279)
.+++|+.|++++|++++ .+ .+..+++|+.|++++|++.+
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 89999999999999985 33 78889999999999999863
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.2e-20 Score=165.28 Aligned_cols=89 Identities=17% Similarity=0.080 Sum_probs=44.1
Q ss_pred cCCCCccEEEeeCCcccccCCcccc-CCCcCcEEeccCc-ccCcccchhhhcccccceeeeecCCcccccc---cCCCCC
Q 044855 16 NHLTHLKVLDIFNNQLSGNFPSTLT-NFTSLEYLDLSSI-NFQGTFSINSLANHSKLEVLLLSSGSNMLQV---KTESWH 90 (279)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 90 (279)
..+++|++|++++|.+++..+..+. .+++|++|++++| .+...........+++|++|++++|...... ......
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3566666676666666544444443 4666666666666 3321111222335666666666655421111 111223
Q ss_pred CCCceeEEEecCCc
Q 044855 91 PTSQLKVLKLSDCQ 104 (279)
Q Consensus 91 ~~~~L~~L~l~~~~ 104 (279)
.+++|++|++++|.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 44555555555554
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.8e-17 Score=128.19 Aligned_cols=134 Identities=24% Similarity=0.309 Sum_probs=91.8
Q ss_pred CceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEE
Q 044855 93 SQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLL 171 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~ 171 (279)
++++.|++++|.++.++. .+..+++|+.|++++|.+... .+..|..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-------------------------~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-------------------------APDAFQGLRSLNSLV 86 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------------------------CTTTTTTCSSCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------------------------CHHHhhCCcCCCEEE
Confidence 345555555555544443 344445555555555544311 245677778888888
Q ss_pred ccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhccc
Q 044855 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLA 251 (279)
Q Consensus 172 l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 251 (279)
+++|.++...+..+..+++|+.|++ ++|++.+..+..|..+++|+.|++++|.+++..+..+..++
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L--------------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLL--------------NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEEC--------------CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CCCCcCCccCHhHccCCCCCCEEEC--------------CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 8888888755555677776665554 55555566677888899999999999999877777788899
Q ss_pred CCcEEEccCCEeee
Q 044855 252 KLRIMDLSNNIFSG 265 (279)
Q Consensus 252 ~L~~L~l~~n~l~~ 265 (279)
+|+.|++++|++..
T Consensus 153 ~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 153 AIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCEEC
T ss_pred CCCEEEeCCCCcCC
Confidence 99999999999873
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=3.2e-17 Score=143.08 Aligned_cols=167 Identities=26% Similarity=0.360 Sum_probs=128.4
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
||++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ ++. +.. +|++|++++|..
T Consensus 65 ~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 65 QLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp ECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCC
T ss_pred EeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcC
Confidence 578899986 55544 388999999999999 677 457999999999999985 443 433 999999999874
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN---- 156 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~---- 156 (279)
. .++. .+++|++|++++|.++.+|. .+++|+.|++++|.+.+ ++. +. ++|+.|++++|
T Consensus 133 ~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-------lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 133 T-MLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-------LPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp S-CCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-------CCC-CC--TTCCEEECCSSCCSS
T ss_pred C-CCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-------cch-hh--CCCCEEECcCCCCCc
Confidence 3 3444 57899999999999988887 57899999999999874 222 33 89999999988
Q ss_pred CCccccCCCCC-------cEEEccccEeeeeccccccCCCCccEEeccCCcC
Q 044855 157 IPNWIGNISTL-------RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSL 201 (279)
Q Consensus 157 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~ 201 (279)
+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|.+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSC
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcC
Confidence 333 332 66 999999999987 677676787777665555544
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4.2e-17 Score=135.03 Aligned_cols=228 Identities=15% Similarity=0.128 Sum_probs=161.5
Q ss_pred cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeE-EEe
Q 044855 22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKV-LKL 100 (279)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l 100 (279)
++++-++++++ .+|..+ .+++++|++++|.++ .++...+.++++|++|++++|.....++..+|..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888888 677655 368999999999997 6777789999999999999998777788888999988776 556
Q ss_pred cCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC-----C-CccccCC-CCCcEEEc
Q 044855 101 SDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN-----I-PNWIGNI-STLRVLLM 172 (279)
Q Consensus 101 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-----~-~~~~~~~-~~L~~L~l 172 (279)
.+|.+..++ ..+..+++|+.|++++|.+....+ ..+.....+..+++.++ + ...+..+ ..++.|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCc------hhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 678888885 466789999999999998863322 23344555666666543 1 1233333 45777888
Q ss_pred cccEeeeeccccccCCCCccEEeccCCcCcccceEEEeec-CccCCCCchhhhcCcCCcEEEccCCcccccCChhhhccc
Q 044855 173 SKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRD-NKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLA 251 (279)
Q Consensus 173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 251 (279)
++|.++...+..+ ...+|+ .+++.+ |.+....+.+|..+++|+.|++++|+++...+.. +.
T Consensus 162 ~~N~i~~i~~~~f-~~~~L~--------------~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~ 223 (350)
T 4ay9_X 162 NKNGIQEIHNSAF-NGTQLD--------------ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LE 223 (350)
T ss_dssp CSSCCCEECTTSS-TTEEEE--------------EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CT
T ss_pred ccccccCCChhhc-cccchh--------------HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hc
Confidence 8888776444333 333444 455543 3343333457889999999999999999544444 45
Q ss_pred CCcEEEccCCEeeeecCccccCCcccc
Q 044855 252 KLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 252 ~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
+|+.|.+.++.-...+|. +..++.|+
T Consensus 224 ~L~~L~~l~~~~l~~lP~-l~~l~~L~ 249 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPT-LEKLVALM 249 (350)
T ss_dssp TCCEEECTTCTTCCCCCC-TTTCCSCC
T ss_pred cchHhhhccCCCcCcCCC-chhCcChh
Confidence 677777777765558884 66666665
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=5.4e-17 Score=125.54 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=75.0
Q ss_pred ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855 159 NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238 (279)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 238 (279)
..+..+++|+.|++++|.++...+..+..+++|+.|++++ |++.+..+..+..+++|+.|++++|+
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~--------------N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS--------------NRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT--------------SCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC--------------CcCCeECHhHcCCCccCCEEECCCCc
Confidence 3567788888888888888876666677777777555554 44555667778888999999999999
Q ss_pred ccccCChhhhcccCCcEEEccCCEeeeecC
Q 044855 239 LQGHIPNELCQLAKLRIMDLSNNIFSGSIP 268 (279)
Q Consensus 239 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 268 (279)
+++..+..+..+++|+.|++++|++.+..+
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 141 ITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 987778888889999999999999875443
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.3e-16 Score=121.33 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=50.9
Q ss_pred cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855 16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL 95 (279)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 95 (279)
+.+++|++|++++|.++ .++ .+..+++|++|++++|.+.. ...+..+++|++|++++|.... .....+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCc-ccChhhcCCCCC
Confidence 44566666666666655 334 45566666666666664431 1234445555555555443221 112234444455
Q ss_pred eEEEecCCcCcc-cChhhhcCCCccEEEeeCCc
Q 044855 96 KVLKLSDCQLHV-IPSFLLQQDHLKFLDLSHNK 127 (279)
Q Consensus 96 ~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 127 (279)
++|++++|.+.. .+..+..+++|++|++++|.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 555555444432 23334444444444444443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.4e-16 Score=122.62 Aligned_cols=148 Identities=20% Similarity=0.260 Sum_probs=110.5
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
.+++.+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|. +
T Consensus 26 c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~-l 100 (229)
T 3e6j_A 26 CRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ-L 100 (229)
T ss_dssp CTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred ccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCc-C
Confidence 4556666 4444333 78889999999888777788888899999999988886 5555667788888888888875 4
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWI 161 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 161 (279)
..++...+..+++|++|++++|.+..+|..+..+++|+.|++++|.+.... +..+
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-------------------------~~~~ 155 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP-------------------------HGAF 155 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-------------------------TTTT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC-------------------------HHHH
Confidence 466666678888888888888888888888888888888888888775221 1345
Q ss_pred cCCCCCcEEEccccEeee
Q 044855 162 GNISTLRVLLMSKNYLEA 179 (279)
Q Consensus 162 ~~~~~L~~L~l~~~~l~~ 179 (279)
..+++|+.|++++|.+..
T Consensus 156 ~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCTTCCEEECTTSCBCT
T ss_pred hCCCCCCEEEeeCCCccC
Confidence 566777777777776654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=3.5e-16 Score=137.83 Aligned_cols=163 Identities=22% Similarity=0.223 Sum_probs=131.7
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
++++|.+... + .++.+++|+.|+|++|.+.+..+ +..+++|++|++++|.+.+ . ..+..+++|+.|++++|..
T Consensus 49 ~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 49 IANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L--SSLKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp BCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C--TTSTTCTTCCEEECTTSCC
T ss_pred ECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C--hhhccCCCCCEEEecCCCC
Confidence 4677888744 3 58999999999999999985443 8899999999999999874 2 3688899999999999875
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC---
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI--- 157 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--- 157 (279)
.. + ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+. .. +..+++|+.|++++|-
T Consensus 122 ~~-l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~-------~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 122 SD-I--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CC-C--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCB
T ss_pred CC-C--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc-------hh-hccCCCCCEEECcCCCCCC
Confidence 43 3 3478899999999999999887 6788999999999999988632 22 7778888899888872
Q ss_pred CccccCCCCCcEEEccccEeeeecc
Q 044855 158 PNWIGNISTLRVLLMSKNYLEANIP 182 (279)
Q Consensus 158 ~~~~~~~~~L~~L~l~~~~l~~~~~ 182 (279)
...+..+++|+.|++++|.+.....
T Consensus 190 l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ChHHccCCCCCEEEccCCcCcCCcc
Confidence 2346778888899998888876433
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=2e-18 Score=152.81 Aligned_cols=243 Identities=13% Similarity=0.123 Sum_probs=127.7
Q ss_pred ccccCCCCccEEEeeCCcccc---cCC------------ccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecC
Q 044855 13 QCLNHLTHLKVLDIFNNQLSG---NFP------------STLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSS 77 (279)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~~---~~~------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 77 (279)
..+..+++|++|++.++.... ..| ..+..+++|++|++++|.+.+.........+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 345677888888888764221 111 12345778888888888765333222223577888888877
Q ss_pred Ccccccc-cCCCCCCCCceeEEEecCCcCcc-----cChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccce
Q 044855 78 GSNMLQV-KTESWHPTSQLKVLKLSDCQLHV-----IPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGL 151 (279)
Q Consensus 78 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 151 (279)
|...... .......+++|++|++++|.+.. ++.....+++|+.|+++++. . ... ...+......+++|+.|
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~-~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVS-FSALERLVTRCPNLKSL 216 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCC-HHHHHHHHHHCTTCCEE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCC-HHHHHHHHHhCCCCcEE
Confidence 7433221 22223467788888888776532 22223355677777777664 0 000 00111122334555555
Q ss_pred eccCC-----CCcccc------------------------------------------------------CCCCCcEEEc
Q 044855 152 DISGN-----IPNWIG------------------------------------------------------NISTLRVLLM 172 (279)
Q Consensus 152 ~l~~~-----~~~~~~------------------------------------------------------~~~~L~~L~l 172 (279)
+++++ ++..+. .+++|+.|++
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEEC
T ss_pred ecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEc
Confidence 55544 111122 3455666666
Q ss_pred cccEeeeec-cccccCCCCccEEeccCCcCc-----------ccceEEEeec---------CccCCCCchhh-hcCcCCc
Q 044855 173 SKNYLEANI-PVQLNHLKSLELIDIFENSLS-----------SKLITLDLRD---------NKFFGRIPYQI-NELSNLH 230 (279)
Q Consensus 173 ~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~-----------~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~ 230 (279)
++|.++... ...+..+++|+.|++.+| +. .+|+.|++.+ +.+++.....+ ..+++|+
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~ 375 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence 665543321 122345566666666655 21 1566666633 22222212222 2366777
Q ss_pred EEEccCCcccccCChhhh-cccCCcEEEcc
Q 044855 231 VLLLRGNSLQGHIPNELC-QLAKLRIMDLS 259 (279)
Q Consensus 231 ~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~ 259 (279)
.|.+.++.+++.....+. .+++|+.|+++
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 776666666655555444 46777777777
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4.6e-16 Score=121.04 Aligned_cols=133 Identities=24% Similarity=0.250 Sum_probs=77.4
Q ss_pred CceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEE
Q 044855 93 SQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLL 171 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~ 171 (279)
++|++|++++|.+..+ +..+..+++|+.|++++|.+.... +..+..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-------------------------~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-------------------------VGVFDSLTQLTVLD 94 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------TTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-------------------------hhhcccCCCcCEEE
Confidence 5667777777766555 345556666777777766654111 13345566677777
Q ss_pred ccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhccc
Q 044855 172 MSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLA 251 (279)
Q Consensus 172 l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 251 (279)
+++|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..+..++
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc---------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 7777666644555566666665555544432 3444555566666666666666544444555566
Q ss_pred CCcEEEccCCEeee
Q 044855 252 KLRIMDLSNNIFSG 265 (279)
Q Consensus 252 ~L~~L~l~~n~l~~ 265 (279)
+|+.|++++|++.+
T Consensus 160 ~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 160 SLTHAYLFGNPWDC 173 (229)
T ss_dssp TCCEEECTTSCBCT
T ss_pred CCCEEEeeCCCccC
Confidence 66666666666553
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=2.1e-16 Score=131.40 Aligned_cols=123 Identities=24% Similarity=0.254 Sum_probs=67.9
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCcccc-CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLT-NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
++++.++ .+|..+. +.++.|+|++|.+++..+..|. ++++|++|++++|.+. .+....+..+++|++|++++|.
T Consensus 25 c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~- 99 (361)
T 2xot_A 25 CSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH- 99 (361)
T ss_dssp CCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC-
T ss_pred eCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCc-
Confidence 3445555 2333332 3356666666666654444454 6666666666666665 3333455566666666666554
Q ss_pred cccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCccc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 129 (279)
+..++...|..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 3344444555666666666666666544 334555566666666666554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=7.9e-17 Score=128.00 Aligned_cols=171 Identities=25% Similarity=0.287 Sum_probs=117.7
Q ss_pred CCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccE
Q 044855 41 NFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKF 120 (279)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 120 (279)
.+.++..++++++.+.+.. .+..+++|+.|++++|.. ..++ .+..+++|++|++++|.+..++. +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i-~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNI-QSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCC-CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCc-ccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence 4666777788887776322 466777888888877753 3333 46677888888888888877766 677788888
Q ss_pred EEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc
Q 044855 121 LDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS 200 (279)
Q Consensus 121 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~ 200 (279)
|++++|.+.+. +. +.. ++|+.|++++|.+++ .+ .+..+++|+.|++++|.
T Consensus 90 L~L~~N~l~~l--------------------------~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 90 LSVNRNRLKNL--------------------------NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp EECCSSCCSCC--------------------------TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSC
T ss_pred EECCCCccCCc--------------------------Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCc
Confidence 88888776521 11 112 778888898888877 33 47777777776666665
Q ss_pred CcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeee
Q 044855 201 LSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGS 266 (279)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (279)
+. + ++ .+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 140 i~--------------~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 140 LK--------------S-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CC--------------B-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC--------------C-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 44 2 22 466777788888888877754 5566777788888888877743
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-16 Score=126.23 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=95.6
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|...
T Consensus 26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCS
T ss_pred hcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccC
Confidence 3455555333 4667777788888777776 444 56777778888887777763222 667777777777776532
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCC---
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIP--- 158 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--- 158 (279)
.++. +.. ++|++|++++|.++.++ .+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|-.
T Consensus 99 -~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-------~-~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 99 -NLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-------I-VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp -CCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-------C-GGGGGCTTCCEEECTTSCCCBC
T ss_pred -CcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-------C-hHHccCCCCCEEECCCCcCcch
Confidence 2222 222 67777777777776664 46667777777777776652 1 1344555555555555421
Q ss_pred ccccCCCCCcEEEccccEeee
Q 044855 159 NWIGNISTLRVLLMSKNYLEA 179 (279)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~l~~ 179 (279)
..+..+++|+.|++++|.+..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 233445555555555555544
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=6.7e-16 Score=119.35 Aligned_cols=148 Identities=14% Similarity=0.251 Sum_probs=97.5
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+. ......+..+++|++|++++|. +
T Consensus 18 c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l 92 (220)
T 2v9t_B 18 CRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK-I 92 (220)
T ss_dssp CTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSC-C
T ss_pred cCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCc-C
Confidence 4556666 3444333 56778888888777666667777788888888887776 4444566777777777777665 3
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCcc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNW 160 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 160 (279)
..++...|..+++|++|++++|.+..++ ..+..+++|+.|++++|.+.... +..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------------------~~~ 147 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-------------------------KGT 147 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-------------------------TTT
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-------------------------HHH
Confidence 4555566677777777777777776553 45566777777777777665221 234
Q ss_pred ccCCCCCcEEEccccEeee
Q 044855 161 IGNISTLRVLLMSKNYLEA 179 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~~l~~ 179 (279)
+..+++|+.|++++|.+..
T Consensus 148 ~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTCTTCCEEECCSSCEEC
T ss_pred HhCCCCCCEEEeCCCCcCC
Confidence 5566777777777776644
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=1e-15 Score=118.36 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=85.1
Q ss_pred cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855 22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS 101 (279)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 101 (279)
+.++++++.++ .+|..+ .+.+++|++++|.+.+..+...+..+++|+.|++++|. +..++...+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence 46777777776 455543 23456777777777633333445566666666665554 334444455666666666666
Q ss_pred CCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEccccEeeee
Q 044855 102 DCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEAN 180 (279)
Q Consensus 102 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 180 (279)
+|.++.++. .+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.++..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCV-------------------------GNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCB-------------------------CTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeE-------------------------CHhHcCCCccCCEEECCCCcCCEE
Confidence 666655544 344566666666666655421 123444555666666666666554
Q ss_pred ccccccCCCCccEEeccCCc
Q 044855 181 IPVQLNHLKSLELIDIFENS 200 (279)
Q Consensus 181 ~~~~l~~~~~L~~l~l~~~~ 200 (279)
.|..+..+++|+.|++++|.
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHhcCCCCCCEEEecCcC
Confidence 45555555555555555444
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=7.1e-18 Score=147.69 Aligned_cols=196 Identities=21% Similarity=0.201 Sum_probs=98.1
Q ss_pred cCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-------------cCcccchhhhcccccceeee-ecCCccc
Q 044855 16 NHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-------------FQGTFSINSLANHSKLEVLL-LSSGSNM 81 (279)
Q Consensus 16 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~L~~L~-l~~~~~~ 81 (279)
..+++|+.|+|++|++. .+|..+..+++|+.|++++|. .. ...+..+..+++|+.|+ ++.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhccc-
Confidence 56778888888888877 677788888888888886653 11 12223445555555555 222210
Q ss_pred ccccCC-----CCC--CCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceecc
Q 044855 82 LQVKTE-----SWH--PTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS 154 (279)
Q Consensus 82 ~~~~~~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 154 (279)
...... .+. ....|+.|++++|.++.+|. +..+++|+.|++++|.+.
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~------------------------- 476 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR------------------------- 476 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-------------------------
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-------------------------
Confidence 000000 000 00124444444444444443 444444444444444433
Q ss_pred CCCCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCC-chhhhcCcCCcEEE
Q 044855 155 GNIPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRI-PYQINELSNLHVLL 233 (279)
Q Consensus 155 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 233 (279)
.+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++ |++.+.. |..+..+++|+.|+
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~--------------N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN--------------NRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS--------------SCCCSSSTTGGGGGCTTCCEEE
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC--------------CCCCCCCCcHHHhcCCCCCEEE
Confidence 133445555556666666665555 33 455555444333333 3333333 55556666666666
Q ss_pred ccCCcccccCCh---hhhcccCCcEEE
Q 044855 234 LRGNSLQGHIPN---ELCQLAKLRIMD 257 (279)
Q Consensus 234 l~~n~~~~~~~~---~~~~~~~L~~L~ 257 (279)
+++|++++..+. .+..+|+|+.|+
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccC
Confidence 666666543322 223355566554
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=9.1e-16 Score=125.94 Aligned_cols=234 Identities=17% Similarity=0.128 Sum_probs=151.2
Q ss_pred CCCccEEEeeCCccc--ccCCccccCCCcCcEEeccCcccCcccchhhhcc--------cccceeeeecCCcccccccCC
Q 044855 18 LTHLKVLDIFNNQLS--GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLAN--------HSKLEVLLLSSGSNMLQVKTE 87 (279)
Q Consensus 18 l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~ 87 (279)
+++|+.|+|++|++. ..... .++.++.+....+. ++...+.. +++|+.+.+.. .+..+...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF----VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE----ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTT
T ss_pred hccCeEEecCcceeEEecCccc---cccccccccccccc----cCHHHhcccccccccccCCCcEEECCc--cccchhHH
Confidence 788999999999877 22211 22334444444443 33455566 78888888766 35567777
Q ss_pred CCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhc----------------------
Q 044855 88 SWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRS---------------------- 144 (279)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---------------------- 144 (279)
+|.++++|+.+++.++.+..++. .+..+.++..+............ ......+..
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~--~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN--RWEHFAFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST--TTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc--cccccccccccccceeEEecCCCcHHHHHhh
Confidence 78888888888888777765554 33445555555544321100000 000111222
Q ss_pred ----cCcccceeccCCCCcc----c-cCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCcc
Q 044855 145 ----STSLEGLDISGNIPNW----I-GNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKF 215 (279)
Q Consensus 145 ----~~~L~~l~l~~~~~~~----~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~ 215 (279)
..++..+.+.+.+... + ..+++|+.+++++|.++......|.++++|+.+++.++ +
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-------------- 261 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-------------- 261 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C--------------
T ss_pred cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c--------------
Confidence 2333344444432111 1 13789999999998888877788999998888777654 2
Q ss_pred CCCCchhhhcCcCCc-EEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 216 FGRIPYQINELSNLH-VLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 216 ~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
......+|.+|++|+ .+++.+ .++...+..|.+|++|+.+++++|.++..-+.+|.+++.|+
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 234456788999999 999988 77767788899999999999999999866667999998886
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=7.9e-16 Score=127.92 Aligned_cols=148 Identities=31% Similarity=0.343 Sum_probs=124.2
Q ss_pred CCCCCcCcCCCCcccc-CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 1 DLSSNNFEGHLPQCLN-HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
||++|.++...+..+. .+++|++|+|++|.+++..+..|..+++|++|++++|.+. ..+...+..+++|+.|++++|.
T Consensus 45 ~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 45 DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp ECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCc
Confidence 5889999988888888 9999999999999999777788999999999999999997 5566778999999999999987
Q ss_pred ccccccCCCCCCCCceeEEEecCCcCcccChhh----hcCCCccEEEeeCCcccccCCCCCcCcchhhccCc--ccceec
Q 044855 80 NMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFL----LQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTS--LEGLDI 153 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--L~~l~l 153 (279)
+..+....|..+++|++|++++|.+..++... ..+++|+.|++++|.+.... ...+..++. ++.+++
T Consensus 124 -i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 124 -IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP------LTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC------HHHHHHSCHHHHTTEEC
T ss_pred -ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC------HHHhhhccHhhcceEEe
Confidence 45566677899999999999999999998765 46899999999999887322 245556665 477888
Q ss_pred cCC
Q 044855 154 SGN 156 (279)
Q Consensus 154 ~~~ 156 (279)
++|
T Consensus 197 ~~N 199 (361)
T 2xot_A 197 HNN 199 (361)
T ss_dssp CSS
T ss_pred cCC
Confidence 876
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.1e-15 Score=113.14 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=102.9
Q ss_pred CCceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcE
Q 044855 92 TSQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRV 169 (279)
Q Consensus 92 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~ 169 (279)
.++|++|++++|.+. .+|..+..+++|+.|++++|.+.. + ..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--------------------------~-~~~~~l~~L~~ 75 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--------------------------V-SNLPKLPKLKK 75 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--------------------------C-SSCCCCSSCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--------------------------h-hhhccCCCCCE
Confidence 367888888888876 777777778888888888887651 1 34566788888
Q ss_pred EEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCC-CchhhhcCcCCcEEEccCCcccccCC---h
Q 044855 170 LLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRGNSLQGHIP---N 245 (279)
Q Consensus 170 L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~ 245 (279)
|++++|.++...|..+..+++|+.|++++|.+ .+. .+..+..+++|+.|++++|++++..+ .
T Consensus 76 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 141 (168)
T 2ell_A 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKL--------------KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141 (168)
T ss_dssp EEEESCCCCSCCCHHHHHCTTCCEEECBSSSC--------------CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred EECcCCcCchHHHHHHhhCCCCCEEeccCCcc--------------CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH
Confidence 88888888776666666677777665555543 332 12567889999999999999986555 4
Q ss_pred hhhcccCCcEEEccCCEeeeecCccc
Q 044855 246 ELCQLAKLRIMDLSNNIFSGSIPSCL 271 (279)
Q Consensus 246 ~~~~~~~L~~L~l~~n~l~~~~p~~~ 271 (279)
.+..+++|+.|++++|.+. .+|++.
T Consensus 142 ~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp HHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred HHHhCccCcEecCCCCChh-hccccc
Confidence 7888999999999999987 667643
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=7.4e-14 Score=117.27 Aligned_cols=240 Identities=10% Similarity=0.093 Sum_probs=156.2
Q ss_pred CCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCcee
Q 044855 17 HLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLK 96 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 96 (279)
.+..++.+.+.+. ++.....+|.++ +|+.+.+..+ +. .+....+.++ +|+.+.+.. .+..+...+|..+++|+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCC
Confidence 4566677777654 333445566664 6777777665 33 4444555554 577777764 35566667777788888
Q ss_pred EEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----CccccCCCCCcEEEc
Q 044855 97 VLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI----PNWIGNISTLRVLLM 172 (279)
Q Consensus 97 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~~L~~L~l 172 (279)
.+++.++.+..++...+.+.+|+.+.+..+ +.. .-...+.++.+|+.+++..++ ..+|.. .+|+.+.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~------I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKE------IGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCE------ECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hhe------ehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe
Confidence 888887777777776666777887777643 331 223566677777777776653 233444 56777777
Q ss_pred cccEeeeeccccccCCCCccEEeccCCcCc---------------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855 173 SKNYLEANIPVQLNHLKSLELIDIFENSLS---------------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237 (279)
Q Consensus 173 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~---------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 237 (279)
.. .++.....+|.+|++|+.+.+.++... .+|+.+.+.+ .+......+|.+|++|+.+.+..+
T Consensus 256 p~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 PN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 43 355555667777777777777665432 1677777763 354455667888888888888554
Q ss_pred cccccCChhhhcccCCcEEEccCCEeeeecCccccCCc
Q 044855 238 SLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVS 275 (279)
Q Consensus 238 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 275 (279)
++......|.++ +|+.+++.+|......+..|..++
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 555667778888 888888888887755555666653
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=3.8e-15 Score=112.64 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=42.3
Q ss_pred ccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCc
Q 044855 159 NWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNS 238 (279)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 238 (279)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++ |++.+..+..+..+++|+.|++++|+
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--------------N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD--------------NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS--------------SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC--------------CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 4555666677777777766665555565655555444433 33334455566667777777777777
Q ss_pred cccc
Q 044855 239 LQGH 242 (279)
Q Consensus 239 ~~~~ 242 (279)
+...
T Consensus 138 l~c~ 141 (192)
T 1w8a_A 138 FNCN 141 (192)
T ss_dssp BCCS
T ss_pred ccCc
Confidence 6644
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=2.5e-16 Score=141.96 Aligned_cols=101 Identities=24% Similarity=0.364 Sum_probs=53.2
Q ss_pred ccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCc
Q 044855 84 VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPN 159 (279)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~ 159 (279)
.+...+..+++|+.|++++|.+..++..++.+++|+.|++++|.+. .++..+..+++|+.|++++| +|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-------ELPAEIKNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-------CCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-------ccChhhhCCCCCCEEeCcCCcCCccCh
Confidence 3445566777777888887777777777777777888888777665 22233333333444333333 333
Q ss_pred cccCCCCCcEEEccccEeeeeccccccCCCCcc
Q 044855 160 WIGNISTLRVLLMSKNYLEANIPVQLNHLKSLE 192 (279)
Q Consensus 160 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 192 (279)
.++.+++|+.|++++|.++. +|..+..+++|+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~ 319 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQ 319 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCC
T ss_pred hhcCCCCCCEEECCCCCCCc-cChhhhcCCCcc
Confidence 44445555555555555443 343344444444
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=3.3e-15 Score=122.63 Aligned_cols=215 Identities=12% Similarity=0.063 Sum_probs=130.9
Q ss_pred CCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc---cccccCCCCCCCCc
Q 044855 18 LTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN---MLQVKTESWHPTSQ 94 (279)
Q Consensus 18 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~ 94 (279)
|++|++|.+.+ .++.....+|.++++|+++++.+|.+. .+....+..+.++..+....... ...+...+|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77777777766 555455556777777777777766655 44445555555555554433210 11222333444444
Q ss_pred ee-EEEecCCcCcccChhhh----cCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----C-CccccCC
Q 044855 95 LK-VLKLSDCQLHVIPSFLL----QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----I-PNWIGNI 164 (279)
Q Consensus 95 L~-~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~-~~~~~~~ 164 (279)
|+ .+.+.... .++..+. ...++..+.+.+.-... ........+++|+.++++++ + ...|..+
T Consensus 178 L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~------~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 178 LETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNA------DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp CEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHH------HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred cceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHH------HHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 54 33333221 1111111 22344455544431110 00111123677888888764 2 3457889
Q ss_pred CCCcEEEccccEeeeeccccccCCCCcc-EEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccC
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLE-LIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHI 243 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~-~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (279)
.+|+.+++.++ ++.....+|.++++|+ .+++.+ . +....+.+|.+|++|+.+++++|.++...
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~--------------l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S--------------VTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T--------------CCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c--------------ceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 99999999988 7777778899999888 777765 2 22344678899999999999999999788
Q ss_pred ChhhhcccCCcEEEc
Q 044855 244 PNELCQLAKLRIMDL 258 (279)
Q Consensus 244 ~~~~~~~~~L~~L~l 258 (279)
...|.++++|+.++.
T Consensus 314 ~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 314 DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCCCEEEC
T ss_pred hhhhcCCcchhhhcc
Confidence 889999999998863
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=2.3e-17 Score=144.45 Aligned_cols=192 Identities=22% Similarity=0.201 Sum_probs=138.4
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCc-------------ccccCCccccCCCcCcEEe-ccCcccCccc----chh
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQ-------------LSGNFPSTLTNFTSLEYLD-LSSINFQGTF----SIN 62 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~----~~~ 62 (279)
||++|.++ .+|..++++++|+.|++.++. ..+..|..+..+++|+.|+ ++.+.+.... ...
T Consensus 355 ~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n 433 (567)
T 1dce_A 355 ELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433 (567)
T ss_dssp CCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred cCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcc
Confidence 46777887 789999999999999997664 3456677788899999998 5655432100 001
Q ss_pred hhcc--cccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcc
Q 044855 63 SLAN--HSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDD 140 (279)
Q Consensus 63 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 140 (279)
.+.. ...|+.|++++|.. ..++. +..+++|+.|++++|.+..+|..+..+++|+.|++++|.+.+
T Consensus 434 ~i~~l~~~~L~~L~Ls~n~l-~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---------- 500 (567)
T 1dce_A 434 SVLKMEYADVRVLHLAHKDL-TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---------- 500 (567)
T ss_dssp HHHHHHHTTCSEEECTTSCC-SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC----------
T ss_pred cccccCccCceEEEecCCCC-CCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC----------
Confidence 1111 13588999999864 34543 889999999999999999999999999999999999998762
Q ss_pred hhhccCcccceeccCCCCccccCCCCCcEEEccccEeeeec-cccccCCCCccEEeccCCcCcccceEEEeecCccCCCC
Q 044855 141 GLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKNYLEANI-PVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRI 219 (279)
Q Consensus 141 ~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~ 219 (279)
+| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.. +....
T Consensus 501 ----------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-----------~~~~~ 552 (567)
T 1dce_A 501 ----------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-----------EEGIQ 552 (567)
T ss_dssp ----------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-----------SSSCT
T ss_pred ----------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-----------CccHH
Confidence 23 5667788888888888888754 7778888877776666665442 00112
Q ss_pred chhhhcCcCCcEEEc
Q 044855 220 PYQINELSNLHVLLL 234 (279)
Q Consensus 220 ~~~~~~~~~L~~L~l 234 (279)
...+..+++|+.|++
T Consensus 553 ~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 553 ERLAEMLPSVSSILT 567 (567)
T ss_dssp THHHHHCTTCSEEEC
T ss_pred HHHHHHCcccCccCC
Confidence 223445788888764
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=8.5e-15 Score=110.74 Aligned_cols=108 Identities=29% Similarity=0.360 Sum_probs=59.4
Q ss_pred ceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEcc
Q 044855 94 QLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMS 173 (279)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~ 173 (279)
+|++|++++|.++.+|..+..+++|+.|++++|.+... .+..|..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-------------------------~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-------------------------SNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-------------------------CTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-------------------------CHhHccCCCCCCEEECC
Confidence 45555555555555555555555555555555544311 12345566666677777
Q ss_pred ccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855 174 KNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240 (279)
Q Consensus 174 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (279)
+|.++...+..+..+++|+.|++++|. +....+..+..+++|+.|++++|++.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGND--------------ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC--------------CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCC--------------CCeeChhhhhcCccccEEEeCCCCee
Confidence 666666555556666655544444433 32333344566666777777776654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=7.3e-15 Score=108.62 Aligned_cols=134 Identities=22% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCCccEEEeeCCccc-ccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855 17 HLTHLKVLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL 95 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 95 (279)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|..... ....+..+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCC
Confidence 3478999999999887 67777788899999999999988743 6778888999999988875433 33445568899
Q ss_pred eEEEecCCcCcccC--hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC
Q 044855 96 KVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI 157 (279)
Q Consensus 96 ~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 157 (279)
++|++++|.+..++ ..+..+++|+.|++++|.+.+..+ .....+..+++|++|+++++-
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND---YRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT---HHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH---HHHHHHHhCccCcEecCCCCC
Confidence 99999999988776 577788999999999998863221 011367788899999988773
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1e-14 Score=105.57 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=86.7
Q ss_pred CCceeEEEecCCcCc--ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcE
Q 044855 92 TSQLKVLKLSDCQLH--VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRV 169 (279)
Q Consensus 92 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~ 169 (279)
.++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ . ..++.+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~-~~~~~l~~L~~ 68 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--------------------------I-ANLPKLNKLKK 68 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--------------------------C-TTCCCCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--------------------------c-hhhhcCCCCCE
Confidence 356777777777775 666666677777777777776541 1 34556677777
Q ss_pred EEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCC-CchhhhcCcCCcEEEccCCcccccCC---h
Q 044855 170 LLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGR-IPYQINELSNLHVLLLRGNSLQGHIP---N 245 (279)
Q Consensus 170 L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~ 245 (279)
|++++|.+++..|..+..+++|+.|++++|.+. +. .+..+..+++|+.|++++|++++..+ .
T Consensus 69 L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~--------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 134 (149)
T 2je0_A 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK--------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134 (149)
T ss_dssp EECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC--------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHH
T ss_pred EECCCCcccchHHHHhhhCCCCCEEECCCCcCC--------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHH
Confidence 777777777655555656666665555555433 21 23567778888888888888886555 4
Q ss_pred hhhcccCCcEEEccC
Q 044855 246 ELCQLAKLRIMDLSN 260 (279)
Q Consensus 246 ~~~~~~~L~~L~l~~ 260 (279)
.+..+++|+.|++++
T Consensus 135 ~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 135 VFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEETTBC
T ss_pred HHHHCCCcccccCCC
Confidence 677888888888764
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=2.6e-15 Score=135.31 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=80.7
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccC-----cccCcccchhhhcccccceeeeecCCcccccccCCCCCCCC
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSS-----INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTS 93 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (279)
+.++.|+|.++.+.. .+..+.....|+.+.|.. +.+ ......+..+..|+.|++++|... .++.. +..++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIF-NISAN-IFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGG-GGGCC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCC-CCChh-hcCCC
Confidence 556667776666553 333332223333333222 111 122345566677777777766532 34333 33667
Q ss_pred ceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcE
Q 044855 94 QLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRV 169 (279)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~ 169 (279)
+|++|++++|.+..+|..+..+++|+.|++++|.+. .++..+..+++|++|++++| +|..++.+++|+.
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-------SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-------SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-------ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence 777777777777777777777777777777777765 33455667777777777766 5677889999999
Q ss_pred EEccccEeeeeccccccC
Q 044855 170 LLMSKNYLEANIPVQLNH 187 (279)
Q Consensus 170 L~l~~~~l~~~~~~~l~~ 187 (279)
|++++|.+++..|..+..
T Consensus 321 L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp EECTTSCCCSHHHHHHHH
T ss_pred EeCCCCccCCCChHHHhh
Confidence 999999998866666543
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=3.6e-13 Score=113.07 Aligned_cols=240 Identities=11% Similarity=0.129 Sum_probs=158.0
Q ss_pred cCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccccc
Q 044855 6 NFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVK 85 (279)
Q Consensus 6 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 85 (279)
.++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .+....+..|.+|+.+++..+. +..++
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~-l~~I~ 196 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTK-ITKLP 196 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSC-CSEEC
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCc-ceEec
Confidence 3444556677775 6888888766 554555567663 688888775 343 4555677778888888886653 45556
Q ss_pred CCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC----Ccc
Q 044855 86 TESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI----PNW 160 (279)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~ 160 (279)
..+|. ..+|+.+.+..+ +..++. .+..+++|+.+.+..+ +... -...+.+ .+|+.+.+...+ ...
T Consensus 197 ~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I------~~~aF~~-~~L~~i~lp~~i~~I~~~a 266 (401)
T 4fdw_A 197 ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI------GQEAFRE-SGITTVKLPNGVTNIASRA 266 (401)
T ss_dssp TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE------CTTTTTT-CCCSEEEEETTCCEECTTT
T ss_pred hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc------ccccccc-CCccEEEeCCCccEEChhH
Confidence 66666 467777777643 555544 4556777777777654 2211 1223333 567777776553 345
Q ss_pred ccCCCCCcEEEccccEee-----eeccccccCCCCccEEeccCCcCc----------ccceEEEeecCccCCCCchhhhc
Q 044855 161 IGNISTLRVLLMSKNYLE-----ANIPVQLNHLKSLELIDIFENSLS----------SKLITLDLRDNKFFGRIPYQINE 225 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~l~l~~~~~~----------~~L~~L~l~~~~~~~~~~~~~~~ 225 (279)
|..+++|+.+.+.++.+. ......|.+|++|+.+.+.++ +. .+|+.+.+..+ +......+|.+
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 677778888887776554 345567777788887777643 22 16778887544 44455678889
Q ss_pred CcCCcEEEccCCcccccCChhhhccc-CCcEEEccCCEee
Q 044855 226 LSNLHVLLLRGNSLQGHIPNELCQLA-KLRIMDLSNNIFS 264 (279)
Q Consensus 226 ~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~ 264 (279)
+ +|+.+++.+|.........+.+++ .+..|++-.+.+.
T Consensus 345 ~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 9 999999999988766667777775 6888888776654
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.1e-14 Score=105.46 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=104.4
Q ss_pred CCCCccEEEeeCCccc-ccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCce
Q 044855 17 HLTHLKVLDIFNNQLS-GNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQL 95 (279)
Q Consensus 17 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 95 (279)
..+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|...... +..+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCC
Confidence 3578999999999988 67888889999999999999988744 67788899999999988754333 3345668999
Q ss_pred eEEEecCCcCcccC--hhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceecc
Q 044855 96 KVLKLSDCQLHVIP--SFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDIS 154 (279)
Q Consensus 96 ~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 154 (279)
++|++++|.++.++ ..+..+++|+.|++++|.+.+..+ .....+..+++|+.++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND---YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---HHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH---HHHHHHHHCCCcccccCC
Confidence 99999999998765 678889999999999998873321 111367888999999876
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=7.7e-14 Score=105.44 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=93.5
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSN 80 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 80 (279)
+++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+. ......+..+++|++|++++|.
T Consensus 16 ~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 16 RCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-
T ss_pred EcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCc-
Confidence 35677777 4454442 57888888888887 67778888888888888888887 4555677888888888888776
Q ss_pred cccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCCccc
Q 044855 81 MLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 129 (279)
+..++...|..+++|++|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 455666677888888888888888877776 3566788888888888765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=7.9e-14 Score=103.95 Aligned_cols=131 Identities=20% Similarity=0.210 Sum_probs=64.1
Q ss_pred eEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCcEEEcccc
Q 044855 96 KVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLRVLLMSKN 175 (279)
Q Consensus 96 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~~L~l~~~ 175 (279)
+.+++++++++.+|..+ .++++.|++++|.+.+.. +..++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~-------------------------~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLP-------------------------HGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCC-------------------------TTTTTTCTTCSEEECCSS
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeC-------------------------HHHhcCcccccEEECCCC
Confidence 44555555555555432 245666666666544111 122344455555555555
Q ss_pred EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcE
Q 044855 176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRI 255 (279)
Q Consensus 176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 255 (279)
.++...+..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~--------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENK--------------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cceEeChhHccCCCccCEEECCCCC--------------ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 5554333344444444433333332 22333334445555555555555555434434455555555
Q ss_pred EEccCCEeeeec
Q 044855 256 MDLSNNIFSGSI 267 (279)
Q Consensus 256 L~l~~n~l~~~~ 267 (279)
|++++|++++..
T Consensus 129 L~l~~N~~~~~~ 140 (177)
T 2o6r_A 129 IWLHTNPWDCSC 140 (177)
T ss_dssp EECCSSCBCCCH
T ss_pred EEecCCCeeccC
Confidence 555555555433
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=3.5e-14 Score=105.75 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=85.4
Q ss_pred ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855 13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT 92 (279)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (279)
..+.++++|++|++++|.++ .++......++|++|++++|.+.+. ..+..+++|++|++++|.. ..++...+..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcC
Confidence 34677889999999999888 4555333344999999999988743 5677788888888888764 34555555778
Q ss_pred CceeEEEecCCcCcccCh--hhhcCCCccEEEeeCCccc
Q 044855 93 SQLKVLKLSDCQLHVIPS--FLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 129 (279)
++|++|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 888888888888877776 6777888888888888775
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=5.5e-14 Score=104.71 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=96.0
Q ss_pred CCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCccccCCCCCc
Q 044855 89 WHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPNWIGNISTLR 168 (279)
Q Consensus 89 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~L~ 168 (279)
+..+.+|+.|++++|.++.++......++|+.|++++|.+.+. ..++.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---------------------------~~l~~l~~L~ 67 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---------------------------DGFPLLRRLK 67 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---------------------------CCCCCCSSCC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---------------------------cccccCCCCC
Confidence 4556788888888888877765433345888888888876521 2456678888
Q ss_pred EEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCch--hhhcCcCCcEEEccCCcccccCCh-
Q 044855 169 VLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPY--QINELSNLHVLLLRGNSLQGHIPN- 245 (279)
Q Consensus 169 ~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~- 245 (279)
.|++++|.++...+..+..+++|+.|++++|.+. .++. .+..+++|+.|++++|+++ ..+.
T Consensus 68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~ 131 (176)
T 1a9n_A 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV---------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHY 131 (176)
T ss_dssp EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC---------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTH
T ss_pred EEECCCCcccccCcchhhcCCCCCEEECCCCcCC---------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhH
Confidence 8888888888754455577777776666655542 2343 6778889999999999988 4454
Q ss_pred ---hhhcccCCcEEEccCCEee
Q 044855 246 ---ELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 246 ---~~~~~~~L~~L~l~~n~l~ 264 (279)
.+..+++|+.||+++|...
T Consensus 132 ~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 132 RLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHHHHCTTCSEETTEECCHH
T ss_pred HHHHHHHCCccceeCCCcCCHH
Confidence 4788899999999988765
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=1.2e-13 Score=104.45 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=90.3
Q ss_pred CCCCCcCcCCCCccccCCCCccEEEeeCCcccccCCc-cccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 1 DLSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPS-TLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 1 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
|++++.++ .+|..+. +++++|++++|.+++..+. .|..+++|++|++++|.+. ......+..+++|++|++++|.
T Consensus 14 ~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 14 DCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp ECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCc
Confidence 46677776 4554443 3788888888888755443 4778888888888888887 3444667788888888888776
Q ss_pred ccccccCCCCCCCCceeEEEecCCcCccc-ChhhhcCCCccEEEeeCCccc
Q 044855 80 NMLQVKTESWHPTSQLKVLKLSDCQLHVI-PSFLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 129 (279)
+..++...+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 4455556677788888888888888655 556677788888888888765
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=4e-13 Score=100.12 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=89.7
Q ss_pred CCCCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccc
Q 044855 2 LSSNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNM 81 (279)
Q Consensus 2 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 81 (279)
++++.+.. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.+. ..+...+..+++|+.|++++|. +
T Consensus 14 ~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~-l 88 (177)
T 2o6r_A 14 CNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK-L 88 (177)
T ss_dssp CCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-C
T ss_pred ecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCC-c
Confidence 45666663 34333 367888888888888666666788888888888888876 4444556778888888888775 3
Q ss_pred ccccCCCCCCCCceeEEEecCCcCcccChh-hhcCCCccEEEeeCCccc
Q 044855 82 LQVKTESWHPTSQLKVLKLSDCQLHVIPSF-LLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 129 (279)
..++...+..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 455566677788888888888888777764 356788888888888765
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=1.5e-12 Score=109.32 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=73.7
Q ss_pred CcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc-------
Q 044855 7 FEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS------- 79 (279)
Q Consensus 7 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------- 79 (279)
++.+...+|.+|.+|+++.+..+ ++.....+|.++.+|+.+++..+ +. .+....+..+..|+.+.+..+-
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeeccee
Confidence 44456678999999999999854 55456678999999999999765 33 4445666777777666554221
Q ss_pred -------------ccccccCCCCCCCCceeEEEecCCcCcccCh-hhhcCCCccEEEeeCC
Q 044855 80 -------------NMLQVKTESWHPTSQLKVLKLSDCQLHVIPS-FLLQQDHLKFLDLSHN 126 (279)
Q Consensus 80 -------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 126 (279)
....+...+|..+.+|+.+.+.++. ..++. .+..+.+|+.+.+..+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence 0112234456677777777776542 33332 4445666766666543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=8.2e-15 Score=111.37 Aligned_cols=145 Identities=23% Similarity=0.278 Sum_probs=84.3
Q ss_pred ceeEEEecCC--cCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCC
Q 044855 94 QLKVLKLSDC--QLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTL 167 (279)
Q Consensus 94 ~L~~L~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L 167 (279)
.++...+.+. .++.+|..+..+++|++|++++|.+.+ ++ .+..+++|+.|++++| ++..+..+++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-------l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-------IS-SLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-------CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-------cc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 4555555544 456666678888899999998887762 22 4444555555555444 22223333445
Q ss_pred cEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCc-hhhhcCcCCcEEEccCCcccccCCh-
Q 044855 168 RVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIP-YQINELSNLHVLLLRGNSLQGHIPN- 245 (279)
Q Consensus 168 ~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~- 245 (279)
+.|++++|.+++ .+ .+..++ +|+.|++++|++.+... ..+..+++|+.|++++|++.+..|.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~--------------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLV--------------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHH--------------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred CEEECcCCcCCc-CC-ccccCC--------------CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 555555554443 22 233333 44455555555543222 3567788888888888888655443
Q ss_pred ---------hhhcccCCcEEEccCCEee
Q 044855 246 ---------ELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 246 ---------~~~~~~~L~~L~l~~n~l~ 264 (279)
.+..+++|+.|| ++.++
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 366778888776 66555
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=2.7e-14 Score=108.47 Aligned_cols=147 Identities=22% Similarity=0.276 Sum_probs=90.3
Q ss_pred cCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCC
Q 044855 114 QQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLK 189 (279)
Q Consensus 114 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 189 (279)
....++.+++..+.+.+..+....++..+..+++|++|+++++ ++ .+..+++|+.|++++|.++. +|..+..++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~ 93 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-IENLDAVAD 93 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-ccchhhcCC
Confidence 3344555555555554433322333334555555555555543 22 33444555555555555443 333333333
Q ss_pred CccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC-hhhhcccCCcEEEccCCEeeeecC
Q 044855 190 SLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP-NELCQLAKLRIMDLSNNIFSGSIP 268 (279)
Q Consensus 190 ~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p 268 (279)
+|+.|++++|++.+ ++ .+..+++|+.|++++|++++... ..+..+++|+.|++++|++++..|
T Consensus 94 --------------~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 94 --------------TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp --------------HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred --------------cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 56677777777755 34 67889999999999999985433 578899999999999999987766
Q ss_pred cc----------ccCCcccc
Q 044855 269 SC----------LGNVSFWR 278 (279)
Q Consensus 269 ~~----------~~~~~~l~ 278 (279)
.. +..++.|+
T Consensus 158 ~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 158 ENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp TTTTHHHHHHHHHHHCSSCS
T ss_pred cccchHHHHHHHHHhCCCcE
Confidence 53 66666665
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=2.8e-10 Score=95.57 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=68.4
Q ss_pred CcCCCCccccCCC-CccEEEeeCCcccccCCccccCCCcCcEEeccCcc---cCcccchhhhcccccceeeeecCCcccc
Q 044855 7 FEGHLPQCLNHLT-HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN---FQGTFSINSLANHSKLEVLLLSSGSNML 82 (279)
Q Consensus 7 l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 82 (279)
++.+...+|.+++ .|+++.+.++ ++.....+|.++.+|+.+.+..+. +. .+....+..+..|+.+.+..+ ..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~--~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS--VT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT--CS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc--cc
Confidence 3445566788775 5888888865 454666788888999998887652 32 444556677777777666433 34
Q ss_pred cccCCCCCCCCceeEEEecCCcCcccC-hhhhcCCCccEEEee
Q 044855 83 QVKTESWHPTSQLKVLKLSDCQLHVIP-SFLLQQDHLKFLDLS 124 (279)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~ 124 (279)
.+...+|..+.+|+.+.+... +..+. ..+..+.+|+.+.+.
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred eehhhhhhhhcccccccccce-eeeecccceeccccccccccc
Confidence 455556666666776666532 22222 233344445554443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.5e-11 Score=91.18 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=72.5
Q ss_pred cEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEec
Q 044855 22 KVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLS 101 (279)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 101 (279)
+.++++++.++ .+|..+. ++|++|++++|.+. ......+..+++|++|++++|. +..++...|..+++|++|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 56777777765 5555442 67777777777776 3444566677777777777764 445566667778888888888
Q ss_pred CCcCcccChh-hhcCCCccEEEeeCCccc
Q 044855 102 DCQLHVIPSF-LLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 102 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 129 (279)
+|.+..++.. +..+++|+.|++++|.+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888777764 667888888888888765
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.5e-11 Score=90.89 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=71.0
Q ss_pred ccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEe
Q 044855 21 LKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKL 100 (279)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 100 (279)
.++++++++.++ .+|..+ .++|++|++++|.+. ......+..+++|++|++++|. +..++...|..+++|++|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 456667766666 455444 266777777777665 3334556666777777776665 34556666777888888888
Q ss_pred cCCcCcccCh-hhhcCCCccEEEeeCCccc
Q 044855 101 SDCQLHVIPS-FLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 129 (279)
++|.+..++. .+..+++|+.|++++|.+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888877766 3667788888888888765
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=9.9e-12 Score=92.17 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=46.9
Q ss_pred CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 244 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 244 (279)
++|+.|++++|.+++..+..+..+++|+.|++++|.+ .+..+..|..+++|+.|++++|++++..+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~i~~~~~~~l~~L~~L~L~~N~l~~l~~ 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL--------------TAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--------------CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC--------------CccChhHhCCcchhhEEECCCCccceeCH
Confidence 4566666666666665555566665555444444433 22333334555566666666666654444
Q ss_pred hhhhcccCCcEEEccCCEee
Q 044855 245 NELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 245 ~~~~~~~~L~~L~l~~n~l~ 264 (279)
..+..+++|+.|++++|++.
T Consensus 99 ~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTTCTTCSEEECCSSCBC
T ss_pred HHhccccCCCEEEeCCCCcc
Confidence 44555566666666666555
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=8.7e-12 Score=92.14 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=55.7
Q ss_pred CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCC
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIP 244 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 244 (279)
++++.|++++|.+++..+..+..+++|+.|++++|. +.+..+..|..+++|+.|++++|++++..+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~--------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 95 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ--------------LTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC--------------cCccChhhccCCCCCCEEECCCCccCEeCH
Confidence 566777777777777556666666666654444443 333444455667777777777777765555
Q ss_pred hhhhcccCCcEEEccCCEeee
Q 044855 245 NELCQLAKLRIMDLSNNIFSG 265 (279)
Q Consensus 245 ~~~~~~~~L~~L~l~~n~l~~ 265 (279)
..+..+++|+.|++++|+++.
T Consensus 96 ~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 96 GAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTTTTCTTCCEEECCSSCBCT
T ss_pred HHhcCCCCCCEEEeCCCCCCC
Confidence 556667777777777777663
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.29 E-value=1.5e-10 Score=97.21 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=65.5
Q ss_pred ccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855 161 IGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (279)
+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.. + +......+|.+|.+|+.+++..+ ++
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--------------~-v~~I~~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--------------L-VEEIGKRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--------------T-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC--------------c-ccEEhHHhccCCCCCCEEEECcc-cc
Confidence 445556666665543 3443444555666665555432 1 22334567889999999999776 66
Q ss_pred ccCChhhhcccCCcEEEccCCEeeeecCccccCCcccc
Q 044855 241 GHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWR 278 (279)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 278 (279)
......|.+|++|+.+++..+ +. .+..+|.++++|+
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred EehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 567778999999999999765 33 4566888888876
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=7.4e-10 Score=92.96 Aligned_cols=242 Identities=10% Similarity=0.098 Sum_probs=139.7
Q ss_pred CcCCCCccccCCCCccEEEeeCCc---ccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCccccc
Q 044855 7 FEGHLPQCLNHLTHLKVLDIFNNQ---LSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQ 83 (279)
Q Consensus 7 l~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 83 (279)
++.+...+|.+|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +. .+....+..+.+|+.+.+... ...
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i~lp~~--~~~ 150 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDTVTIPEG--VTS 150 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCEEECCTT--CCE
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhcccccccccce--eee
Confidence 455667899999999999998753 55455667888999998887654 32 455567788888988888643 445
Q ss_pred ccCCCCCCCCceeEEEecCCcCcccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCc----------------
Q 044855 84 VKTESWHPTSQLKVLKLSDCQLHVIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTS---------------- 147 (279)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~---------------- 147 (279)
+...+|..+..|+.+.+..+ +..+....+...+|+.+.+..+-.. .. ...+..+.+
T Consensus 151 I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~------~~af~~c~~l~~~~~~~~~~~~~~~ 222 (394)
T 4gt6_A 151 VADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IG------TNAFSECFALSTITSDSESYPAIDN 222 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-EC------TTTTTTCTTCCEEEECCSSSCBSSS
T ss_pred ecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cc------cchhhhccccceecccccccccccc
Confidence 66667778888888887654 3444443344455666665432211 00 011111111
Q ss_pred ---------------------ccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc--
Q 044855 148 ---------------------LEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS-- 200 (279)
Q Consensus 148 ---------------------L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~-- 200 (279)
+..+.+... -..+|..+..|+.+.+..+.. ......|.++++|+.+.+...-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~i~~ 301 (394)
T 4gt6_A 223 VLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSRITE 301 (394)
T ss_dssp CEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTTCCE
T ss_pred eeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCCCcccc
Confidence 111111111 122345556666666654422 2244455566666666554221
Q ss_pred Cc-------ccceEEEeecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEe
Q 044855 201 LS-------SKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIF 263 (279)
Q Consensus 201 ~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 263 (279)
+. .+|+.+.+..+ ++.....+|.+|.+|+.+.+-.+ ++......|.+|++|+.+++.++..
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 00 15566666543 33334456777777777777543 4445556677777777777777653
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=4.4e-13 Score=111.49 Aligned_cols=153 Identities=19% Similarity=0.142 Sum_probs=94.0
Q ss_pred CCceeEEEecCCcCccc-----Chhhhc-CCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCCCc-----c
Q 044855 92 TSQLKVLKLSDCQLHVI-----PSFLLQ-QDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNIPN-----W 160 (279)
Q Consensus 92 ~~~L~~L~l~~~~~~~~-----~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~ 160 (279)
.+.|+.|++++|.++.. ...+.. .++|++|++++|.+.+.. .......+.+|+.|++++|-.. .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----LRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 45789999999988532 233332 368999999999875321 1122233557888888887321 1
Q ss_pred c-----cCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCC
Q 044855 161 I-----GNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFG 217 (279)
Q Consensus 161 ~-----~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~ 217 (279)
+ ...+.|+.|++++|.++.. ++..+..+++|+.|++++|.+.+ +|+.|++++|.+++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1 2457788888888887652 33344667788888888777653 56666666666544
Q ss_pred CC----chhhhcCcCCcEEEccCCcccccCChhhhc
Q 044855 218 RI----PYQINELSNLHVLLLRGNSLQGHIPNELCQ 249 (279)
Q Consensus 218 ~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 249 (279)
.. +..+..+++|++|++++|.+++.....+..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 22 223334566666666666665554444443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=3.9e-13 Score=111.78 Aligned_cols=133 Identities=21% Similarity=0.127 Sum_probs=64.3
Q ss_pred ccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCccc-----Chhh-hcCCCccEEEeeCCcccccCCCCCcCcch
Q 044855 68 SKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLHVI-----PSFL-LQQDHLKFLDLSHNKLVGNFPICGKMDDG 141 (279)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 141 (279)
.+|+.|++++|.............+++|++|++++|.++.. ...+ ...++|+.|++++|.+.+... ..+...
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV--AVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH--HHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH--HHHHHH
Confidence 35555555555432211111122234555555555555221 1112 123455555555555432110 112223
Q ss_pred hhccCcccceeccCCC---------CccccCCCCCcEEEccccEeeee----ccccccCCCCccEEeccCCcCc
Q 044855 142 LRSSTSLEGLDISGNI---------PNWIGNISTLRVLLMSKNYLEAN----IPVQLNHLKSLELIDIFENSLS 202 (279)
Q Consensus 142 ~~~~~~L~~l~l~~~~---------~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~l~l~~~~~~ 202 (279)
+...++|++|++++|- ...+...++|+.|++++|.++.. ++..+...++|+.|++++|.+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3445555555555552 23345567788888888887653 2233445566776666666554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=1.6e-08 Score=84.34 Aligned_cols=129 Identities=12% Similarity=0.144 Sum_probs=73.1
Q ss_pred cCcccceeccCCC----CccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCcC-------c--ccceEEEee
Q 044855 145 STSLEGLDISGNI----PNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSL-------S--SKLITLDLR 211 (279)
Q Consensus 145 ~~~L~~l~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~-------~--~~L~~L~l~ 211 (279)
..+++.+.+...+ ...+..+..|+.+.+..+ ++......+..+.+|+.+.+..+-. . .+|+.+.+.
T Consensus 216 ~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 216 GKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEEC
T ss_pred ccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccccc
Confidence 3444444444331 233455666777766654 4444455666667777666643310 0 166677776
Q ss_pred cCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCcc
Q 044855 212 DNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSF 276 (279)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 276 (279)
++.+......+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+.+..+ ++..-..+|.++..
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 66655455566777777777777543 44455566777777777777544 44334456655543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=1.1e-09 Score=90.34 Aligned_cols=99 Identities=20% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCC-cCcCCCCccccCCCCccEEEeeC-CcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCc
Q 044855 2 LSSN-NFEGHLPQCLNHLTHLKVLDIFN-NQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGS 79 (279)
Q Consensus 2 l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 79 (279)
.+++ .++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+. ..+...+..+++|+.|++++|.
T Consensus 15 ~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 15 CTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSC
T ss_pred cCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCc
Confidence 3444 6663 555 77788888888885 7777666667788888888888888776 4444566777777777777765
Q ss_pred ccccccCCCCCCCCceeEEEecCCcC
Q 044855 80 NMLQVKTESWHPTSQLKVLKLSDCQL 105 (279)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~~ 105 (279)
+..++...+..++ |+.|++.+|.+
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCc
Confidence 3455555555554 77777777765
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.02 E-value=1.1e-07 Score=79.22 Aligned_cols=256 Identities=11% Similarity=0.109 Sum_probs=147.9
Q ss_pred ccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCcccCcccchhhhcccccceeeeecCCcccccccCCCCCCC
Q 044855 13 QCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPT 92 (279)
Q Consensus 13 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (279)
.++....+|+++.+... ++.....+|.++.+|+.+.+..+ +. .+....+.++ +|+.+.+..+ ...+...+|...
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce--eeEeccceeccC
Confidence 34556677888888654 44455567888888888888654 33 4445556665 4666655433 344455555543
Q ss_pred CceeEEEecCCcCcccChhh-----------------------hcCCCccEEEeeCCcccccCC------CCCcCcchhh
Q 044855 93 SQLKVLKLSDCQLHVIPSFL-----------------------LQQDHLKFLDLSHNKLVGNFP------ICGKMDDGLR 143 (279)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~-----------------------~~~~~L~~L~l~~~~~~~~~~------~~~~~~~~~~ 143 (279)
+|+.+.+... +..+.... ..+.+++.+.+.......... ........+.
T Consensus 114 -~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 114 -DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp -CCSEEECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred -CcccccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 5777766543 22222222 223333333332211100000 0000011122
Q ss_pred ccCcccceeccCC----CCccccCCCCCcEEEccccEeeeeccccccCCCCccEEeccCCc--Cc-------ccceEEEe
Q 044855 144 SSTSLEGLDISGN----IPNWIGNISTLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENS--LS-------SKLITLDL 210 (279)
Q Consensus 144 ~~~~L~~l~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~--~~-------~~L~~L~l 210 (279)
....+..+.+... ....+..+..++.+.+..+ +.......+..+..|+.+.+..+- +. .+|+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccc
Confidence 2222333333222 1233455677788777654 344455677888889888876541 11 16778877
Q ss_pred ecCccCCCCchhhhcCcCCcEEEccCCcccccCChhhhcccCCcEEEccCCEeeeecCccccCCccccC
Q 044855 211 RDNKFFGRIPYQINELSNLHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNIFSGSIPSCLGNVSFWRE 279 (279)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 279 (279)
..+ +......+|.+|++|+.+.+.++.++......|.+|.+|+.+++..+ ++..-..+|.+|+.|++
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 543 33344567889999999999999888777888999999999999765 55455679999988864
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=2.9e-09 Score=87.73 Aligned_cols=104 Identities=23% Similarity=0.219 Sum_probs=89.1
Q ss_pred cEEEeeCC-cccccCCccccCCCcCcEEeccC-cccCcccchhhhcccccceeeeecCCcccccccCCCCCCCCceeEEE
Q 044855 22 KVLDIFNN-QLSGNFPSTLTNFTSLEYLDLSS-INFQGTFSINSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLK 99 (279)
Q Consensus 22 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 99 (279)
..++.+++ .++ .+|. +..+++|++|+|++ |.+. ..+...+..+++|+.|++++|. +..++...|..+++|++|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEe
Confidence 35688887 888 6888 99999999999996 8887 5666789999999999999986 5667777889999999999
Q ss_pred ecCCcCcccChhhhcCCCccEEEeeCCccc
Q 044855 100 LSDCQLHVIPSFLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 100 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 129 (279)
|++|.+..+|........|+.|++.+|.+.
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 999999999876665555999999999875
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=8.6e-10 Score=91.06 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCCCCceeEEEecCCcCc----------ccChhhhcCCCccEEEeeCCcccccCCCCCcCcchhhccCcccceeccCCC-
Q 044855 89 WHPTSQLKVLKLSDCQLH----------VIPSFLLQQDHLKFLDLSHNKLVGNFPICGKMDDGLRSSTSLEGLDISGNI- 157 (279)
Q Consensus 89 ~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~- 157 (279)
...+++|+.|.+.+...+ .+...+..+|+|++|.++++.-. .++. + .+++|+.|++..+-
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-------~l~~-~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-------SIGK-K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-------BCCS-C-BCTTCSEEEEECSBC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-------eecc-c-cCCCCcEEEEecCCC
Confidence 345678888877654321 23345566788888888776211 1111 2 26677777776552
Q ss_pred Cc----cc--cCCCCCcEEEcc
Q 044855 158 PN----WI--GNISTLRVLLMS 173 (279)
Q Consensus 158 ~~----~~--~~~~~L~~L~l~ 173 (279)
+. .+ ..+++|+.|+++
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEE
T ss_pred ChHHHHHHHHccCCCCcEEEEe
Confidence 11 12 256777877775
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=3e-09 Score=87.85 Aligned_cols=205 Identities=18% Similarity=0.150 Sum_probs=112.0
Q ss_pred CCccEEEeeCCcccc-c-------CCccccCCCcCcEEeccCcccCc----c----cchhhhcccccceeeeecCCcccc
Q 044855 19 THLKVLDIFNNQLSG-N-------FPSTLTNFTSLEYLDLSSINFQG----T----FSINSLANHSKLEVLLLSSGSNML 82 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~l~~~~~~~----~----~~~~~~~~~~~L~~L~l~~~~~~~ 82 (279)
..++.|.+....+.+ . +..+...+++|+.|.+.+..... . .....+..+++|+.|.++++...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 446677776554331 1 12334567888888886543210 0 11234466788888888766311
Q ss_pred cccCCCCCCCCceeEEEecCCcCccc-Chhhh--cCCCccEEEeeCC--cccccCCCCCcCcchhhccCcccceeccCCC
Q 044855 83 QVKTESWHPTSQLKVLKLSDCQLHVI-PSFLL--QQDHLKFLDLSHN--KLVGNFPICGKMDDGLRSSTSLEGLDISGNI 157 (279)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~--~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 157 (279)
..+. + .+++|++|.+..+.+..- ...+. .+|+|+.|+++.+ ...+.. .+. .+
T Consensus 186 ~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--------~~~---~l--------- 242 (362)
T 2ra8_A 186 SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--------DMN---VF--------- 242 (362)
T ss_dssp BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--------CGG---GT---------
T ss_pred eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--------hHH---HH---------
Confidence 2221 2 267888888877766321 11222 5788888887532 111000 000 00
Q ss_pred Cccc--cCCCCCcEEEccccEeeeecccccc---CCCCccEEeccCCcCcccceEEEeecCccCCCC----chhhhcCcC
Q 044855 158 PNWI--GNISTLRVLLMSKNYLEANIPVQLN---HLKSLELIDIFENSLSSKLITLDLRDNKFFGRI----PYQINELSN 228 (279)
Q Consensus 158 ~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~ 228 (279)
...+ ..+++|+.|.+.+|.+....+..+. .+++|+ +|+++.|.+.+.. +..+..+++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~--------------~LdLs~n~L~d~G~~~L~~~L~~l~~ 308 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE--------------TMDISAGVLTDEGARLLLDHVDKIKH 308 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS--------------EEECCSSCCBHHHHHHHHTTHHHHTT
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC--------------EEECCCCCCChHHHHHHHhhcccCCc
Confidence 0111 2467888888888776543222222 244445 4555555544432 233356789
Q ss_pred CcEEEccCCcccccCChhhhcccCCcEEEccCCE
Q 044855 229 LHVLLLRGNSLQGHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 229 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
|+.|++++|.+++.....+...- -..++++++.
T Consensus 309 L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 309 LKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred ceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 99999999998876666555411 3558888876
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=3.5e-09 Score=79.16 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=72.3
Q ss_pred ccCCCCCcEEEcccc-Eeeee----ccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCC---
Q 044855 161 IGNISTLRVLLMSKN-YLEAN----IPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGR--- 218 (279)
Q Consensus 161 ~~~~~~L~~L~l~~~-~l~~~----~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~--- 218 (279)
+...+.|++|++++| .+... +...+...++|++|++++|.+.+ +|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444566666666666 55431 23344556667777777776653 677888888887654
Q ss_pred -CchhhhcCcCCcEEEc--cCCcccccCC----hhhhcccCCcEEEccCCEee
Q 044855 219 -IPYQINELSNLHVLLL--RGNSLQGHIP----NELCQLAKLRIMDLSNNIFS 264 (279)
Q Consensus 219 -~~~~~~~~~~L~~L~l--~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~ 264 (279)
+...+...++|++|++ ++|.+.+... ..+...++|+.|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455667889999999 8899986643 44556689999999999886
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=3.4e-08 Score=72.25 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=54.6
Q ss_pred CCccEEEeeCCcccccCCccccCCCcCcEEeccCcc-cCcccchhhhccc----ccceeeeecCCcccccccCCCCCCCC
Q 044855 19 THLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSIN-FQGTFSINSLANH----SKLEVLLLSSGSNMLQVKTESWHPTS 93 (279)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (279)
.+|+.|++++|.++......+..+++|++|++++|. ++ ......+..+ +.|++|++++|..+++.....+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 457888888887776555667778888888888875 44 3233344442 46777777777655554444455566
Q ss_pred ceeEEEecCCc
Q 044855 94 QLKVLKLSDCQ 104 (279)
Q Consensus 94 ~L~~L~l~~~~ 104 (279)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777776663
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=2.7e-08 Score=74.27 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=70.3
Q ss_pred ccccCCCCccEEEeeCC-cccc----cCCccccCCCcCcEEeccCcccCcccc---hhhhcccccceeeeecCCcccccc
Q 044855 13 QCLNHLTHLKVLDIFNN-QLSG----NFPSTLTNFTSLEYLDLSSINFQGTFS---INSLANHSKLEVLLLSSGSNMLQV 84 (279)
Q Consensus 13 ~~~~~l~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~ 84 (279)
..+...+.|++|+|++| .+.. .+...+...++|++|++++|.+.+... ...+...+.|++|++++|......
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566778888888887 7653 233445667788888888887753211 123445566777777776543221
Q ss_pred ---cCCCCCCCCceeEEEe--cCCcCc-----ccChhhhcCCCccEEEeeCCccc
Q 044855 85 ---KTESWHPTSQLKVLKL--SDCQLH-----VIPSFLLQQDHLKFLDLSHNKLV 129 (279)
Q Consensus 85 ---~~~~~~~~~~L~~L~l--~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 129 (279)
....+...++|++|++ ++|.++ .+...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233455566777777 666663 23445555667777777776653
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=6.7e-08 Score=70.72 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=57.2
Q ss_pred CCCcEEEccccEeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcC----cCCcEEEccCCc-c
Q 044855 165 STLRVLLMSKNYLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINEL----SNLHVLLLRGNS-L 239 (279)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~L~~L~l~~n~-~ 239 (279)
..|+.|++++|.++......+..+++|+.|++++|. .+++.....+..+ ++|++|++++|. +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~-------------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH-------------YIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT-------------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC-------------ccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 468999999998877556666777777765555553 1333333344442 467788887774 7
Q ss_pred cccCChhhhcccCCcEEEccCCE
Q 044855 240 QGHIPNELCQLAKLRIMDLSNNI 262 (279)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~n~ 262 (279)
++.....+..+++|+.|++++|+
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCT
T ss_pred CHHHHHHHhcCCCCCEEECCCCC
Confidence 77766777777788888888776
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=8.1e-08 Score=75.49 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=47.1
Q ss_pred cCCCcCcEEeccCcccCcccc-hhhhcccccceeeeecCCcccccccCCCCCCCCceeEEEecCCcCc-ccC-------h
Q 044855 40 TNFTSLEYLDLSSINFQGTFS-INSLANHSKLEVLLLSSGSNMLQVKTESWHPTSQLKVLKLSDCQLH-VIP-------S 110 (279)
Q Consensus 40 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~-------~ 110 (279)
.++++|++|++++|.+.+... ...+..+++|+.|++++|..........+..+ +|++|++.+|.+. .++ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 346666677777666653221 12345666667777666654332222223333 7788888888773 333 2
Q ss_pred hhhcCCCccEEEe
Q 044855 111 FLLQQDHLKFLDL 123 (279)
Q Consensus 111 ~~~~~~~L~~L~l 123 (279)
.+..+|+|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3556788887653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=1.5e-06 Score=68.29 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=18.6
Q ss_pred CCCCCcEEEccccEeeee--ccccccCCCCccEEeccCCc
Q 044855 163 NISTLRVLLMSKNYLEAN--IPVQLNHLKSLELIDIFENS 200 (279)
Q Consensus 163 ~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~l~l~~~~ 200 (279)
.++.|+.|++++|.+++. ++..+..+++|+.|++++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 345666666666665551 22334445555544444443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=3.3e-05 Score=57.54 Aligned_cols=102 Identities=10% Similarity=0.070 Sum_probs=66.5
Q ss_pred cCCCCCcEEEcccc-Eeee----eccccccCCCCccEEeccCCcCcc--------------cceEEEeecCccCCCC---
Q 044855 162 GNISTLRVLLMSKN-YLEA----NIPVQLNHLKSLELIDIFENSLSS--------------KLITLDLRDNKFFGRI--- 219 (279)
Q Consensus 162 ~~~~~L~~L~l~~~-~l~~----~~~~~l~~~~~L~~l~l~~~~~~~--------------~L~~L~l~~~~~~~~~--- 219 (279)
.+-+.|+.|+++++ .+.. .+...+...+.|+.|++++|.+.+ .|+.|+|++|.|.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456777777664 5433 233445566677777777777764 7788888888876543
Q ss_pred -chhhhcCcCCcEEEccCC---ccccc----CChhhhcccCCcEEEccCCEe
Q 044855 220 -PYQINELSNLHVLLLRGN---SLQGH----IPNELCQLAKLRIMDLSNNIF 263 (279)
Q Consensus 220 -~~~~~~~~~L~~L~l~~n---~~~~~----~~~~~~~~~~L~~L~l~~n~l 263 (279)
.+++.....|++|+++++ .+.+. +.+.+..-++|..|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334555677999999765 44432 444566678888998887764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00024 Score=52.88 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=63.5
Q ss_pred ccccccCCCCccEEeccCC-cCcc--------------cceEEEeecCccCCC----CchhhhcCcCCcEEEccCCcccc
Q 044855 181 IPVQLNHLKSLELIDIFEN-SLSS--------------KLITLDLRDNKFFGR----IPYQINELSNLHVLLLRGNSLQG 241 (279)
Q Consensus 181 ~~~~l~~~~~L~~l~l~~~-~~~~--------------~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~ 241 (279)
+...+..-+.|+.|+++++ .+.+ .|+.|+|++|++.+. +.+.+...+.|+.|+|+.|.|.+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3345567789999999986 7664 899999999999754 34455677899999999999987
Q ss_pred cCChh----hhcccCCcEEEccCC
Q 044855 242 HIPNE----LCQLAKLRIMDLSNN 261 (279)
Q Consensus 242 ~~~~~----~~~~~~L~~L~l~~n 261 (279)
..... +..-+.|+.|++++|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 65554 445678999999876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.0013 Score=45.64 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=24.2
Q ss_pred cceEEEeecCccCCCCchhhhcCcCCcEEEccCCccc
Q 044855 204 KLITLDLRDNKFFGRIPYQINELSNLHVLLLRGNSLQ 240 (279)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (279)
+++.|+|++|+++..-+..|..+++|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666666665555556677777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0036 Score=43.31 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=27.8
Q ss_pred CccEEEeeCCcccccCCccccCCCcCcEEeccCcccC
Q 044855 20 HLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSINFQ 56 (279)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 56 (279)
+|++|+|++|.++...+..|..+++|++|+|.+|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5788888888887555566777888888888887664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.87 E-value=0.33 Score=31.55 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=38.6
Q ss_pred CCcCcCCCCccccCCCCccEEEeeCCcccccCCccccCCCcCcEEeccCc
Q 044855 4 SNNFEGHLPQCLNHLTHLKVLDIFNNQLSGNFPSTLTNFTSLEYLDLSSI 53 (279)
Q Consensus 4 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 53 (279)
+..++.+...+|..|..|+.+.|..+- +.....+|.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 456777788899999999999998763 3355668889999999888764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.32 E-value=5.6 Score=25.60 Aligned_cols=47 Identities=13% Similarity=-0.018 Sum_probs=29.2
Q ss_pred EeeeeccccccCCCCccEEeccCCcCcccceEEEeecCccCCCCchhhhcCcCCcEEEccCC
Q 044855 176 YLEANIPVQLNHLKSLELIDIFENSLSSKLITLDLRDNKFFGRIPYQINELSNLHVLLLRGN 237 (279)
Q Consensus 176 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 237 (279)
.++......|.+|.+|+.+.+-.+ ++.....+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~---------------v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN---------------IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT---------------SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc---------------hheEcHHHHhccCCccEEEEcCC
Confidence 344445556777777776655432 22344557778888888888654
Done!