Query 044858
Match_columns 426
No_of_seqs 313 out of 2325
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.1E-58 1.8E-62 473.2 33.9 388 33-425 23-439 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.9E-45 1.1E-49 341.5 20.4 266 156-425 1-278 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.4E-33 3E-38 307.0 25.8 249 148-410 181-447 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.5 5.3E-12 1.2E-16 116.9 24.6 183 169-354 40-242 (269)
5 PRK00411 cdc6 cell division co 99.5 1.3E-11 2.8E-16 120.8 25.0 242 149-408 28-304 (394)
6 PF01637 Arch_ATPase: Archaeal 99.4 6.5E-13 1.4E-17 120.1 11.5 195 153-350 1-234 (234)
7 PRK04841 transcriptional regul 99.4 5.1E-12 1.1E-16 136.8 20.5 244 148-415 11-281 (903)
8 TIGR02928 orc1/cdc6 family rep 99.4 2.4E-10 5.1E-15 110.7 26.2 244 150-409 14-298 (365)
9 PF05729 NACHT: NACHT domain 99.4 7.2E-12 1.6E-16 106.9 11.9 144 173-321 1-164 (166)
10 PRK13342 recombination factor 99.2 2.5E-09 5.4E-14 104.8 19.5 194 149-368 10-218 (413)
11 TIGR00635 ruvB Holliday juncti 99.2 1.2E-09 2.6E-14 103.1 16.6 189 150-353 3-204 (305)
12 COG2256 MGS1 ATPase related to 99.1 9.1E-10 2E-14 102.2 14.2 178 148-350 21-212 (436)
13 COG2909 MalT ATP-dependent tra 99.1 2E-09 4.3E-14 108.6 17.6 242 146-410 14-282 (894)
14 COG3899 Predicted ATPase [Gene 99.1 1.1E-09 2.3E-14 115.6 16.3 262 152-423 1-333 (849)
15 PRK00080 ruvB Holliday junctio 99.1 4.4E-09 9.6E-14 100.0 16.9 192 148-353 22-225 (328)
16 PRK07003 DNA polymerase III su 99.0 1.9E-08 4.2E-13 101.8 19.3 183 148-352 13-223 (830)
17 PRK12402 replication factor C 99.0 1.9E-08 4.1E-13 96.4 16.5 202 149-352 13-228 (337)
18 PTZ00112 origin recognition co 99.0 1E-07 2.3E-12 97.3 21.7 255 150-421 754-1048(1164)
19 PRK06893 DNA replication initi 99.0 1.1E-08 2.3E-13 92.0 13.3 155 171-354 38-207 (229)
20 PF13173 AAA_14: AAA domain 98.9 4.5E-09 9.8E-14 85.5 9.0 121 172-312 2-127 (128)
21 PRK14961 DNA polymerase III su 98.9 1.4E-07 3E-12 90.9 19.3 196 148-351 13-221 (363)
22 PF13401 AAA_22: AAA domain; P 98.9 5.9E-09 1.3E-13 85.2 8.3 115 172-288 4-125 (131)
23 PRK00440 rfc replication facto 98.9 8.4E-08 1.8E-12 91.1 16.9 186 149-351 15-204 (319)
24 PRK14949 DNA polymerase III su 98.9 3.8E-08 8.2E-13 101.6 15.2 185 148-350 13-220 (944)
25 PRK05564 DNA polymerase III su 98.9 2.7E-07 5.8E-12 87.2 19.3 176 151-348 4-188 (313)
26 TIGR03420 DnaA_homol_Hda DnaA 98.9 3.3E-08 7.2E-13 88.9 12.6 170 156-353 22-204 (226)
27 PRK12323 DNA polymerase III su 98.9 5.1E-08 1.1E-12 97.5 14.5 200 148-350 13-225 (700)
28 PLN03025 replication factor C 98.8 9E-08 2E-12 90.7 15.6 187 148-350 10-200 (319)
29 PRK06645 DNA polymerase III su 98.8 1.5E-07 3.2E-12 93.4 17.3 180 148-349 18-228 (507)
30 KOG2028 ATPase related to the 98.8 7.1E-08 1.5E-12 88.4 13.2 160 165-345 155-331 (554)
31 COG1474 CDC6 Cdc6-related prot 98.8 8.8E-07 1.9E-11 84.7 21.3 199 152-350 18-238 (366)
32 PF05496 RuvB_N: Holliday junc 98.8 8.1E-08 1.8E-12 83.6 12.8 180 147-355 20-226 (233)
33 PRK14963 DNA polymerase III su 98.8 2.5E-07 5.5E-12 92.1 17.7 196 149-348 12-215 (504)
34 PRK14960 DNA polymerase III su 98.8 1.3E-07 2.8E-12 94.9 15.1 181 148-350 12-219 (702)
35 PRK09112 DNA polymerase III su 98.8 4.3E-07 9.4E-12 86.4 17.2 198 148-351 20-241 (351)
36 PRK14957 DNA polymerase III su 98.8 4E-07 8.7E-12 91.0 17.3 186 148-351 13-222 (546)
37 PRK04195 replication factor C 98.8 2.5E-07 5.5E-12 92.6 16.0 185 148-355 11-207 (482)
38 PRK07994 DNA polymerase III su 98.8 1.7E-07 3.7E-12 95.1 14.7 196 148-351 13-221 (647)
39 PRK14956 DNA polymerase III su 98.7 3E-07 6.6E-12 89.6 15.8 196 148-351 15-223 (484)
40 cd00009 AAA The AAA+ (ATPases 98.7 1.2E-07 2.6E-12 78.7 11.2 122 155-290 2-131 (151)
41 PRK14962 DNA polymerase III su 98.7 4.6E-07 9.9E-12 89.6 16.8 201 148-366 11-239 (472)
42 PF13191 AAA_16: AAA ATPase do 98.7 5.4E-08 1.2E-12 84.5 9.2 49 152-200 1-52 (185)
43 TIGR02903 spore_lon_C ATP-depe 98.7 4.5E-07 9.8E-12 92.8 16.6 204 148-353 151-398 (615)
44 PRK14958 DNA polymerase III su 98.7 2.8E-07 6E-12 92.0 14.6 186 148-351 13-221 (509)
45 cd01128 rho_factor Transcripti 98.7 4.8E-08 1E-12 88.2 8.3 92 171-263 15-115 (249)
46 PRK14964 DNA polymerase III su 98.7 6E-07 1.3E-11 88.5 16.6 185 148-350 10-217 (491)
47 PRK13341 recombination factor 98.7 2.4E-07 5.1E-12 95.9 14.3 177 148-350 25-217 (725)
48 PTZ00202 tuzin; Provisional 98.7 1.6E-06 3.5E-11 82.5 18.5 166 145-320 256-434 (550)
49 PRK07471 DNA polymerase III su 98.7 1E-06 2.3E-11 84.3 17.6 197 148-350 16-238 (365)
50 PRK08691 DNA polymerase III su 98.7 3.1E-07 6.8E-12 92.9 14.5 182 148-351 13-221 (709)
51 TIGR02397 dnaX_nterm DNA polym 98.7 1.2E-06 2.6E-11 84.5 17.9 184 149-351 12-219 (355)
52 PRK14951 DNA polymerase III su 98.7 7.5E-07 1.6E-11 90.2 16.4 198 148-350 13-225 (618)
53 TIGR01242 26Sp45 26S proteasom 98.7 1E-06 2.3E-11 85.0 16.7 175 148-344 119-328 (364)
54 PRK07940 DNA polymerase III su 98.7 1E-06 2.2E-11 85.1 16.2 172 150-349 4-212 (394)
55 TIGR00678 holB DNA polymerase 98.6 1.2E-06 2.6E-11 76.3 15.2 159 163-346 4-187 (188)
56 PRK14955 DNA polymerase III su 98.6 5.4E-07 1.2E-11 87.9 14.3 200 149-349 14-227 (397)
57 PRK14959 DNA polymerase III su 98.6 2.5E-06 5.4E-11 86.0 18.0 198 149-354 14-225 (624)
58 PRK08084 DNA replication initi 98.6 8.3E-07 1.8E-11 80.1 13.1 167 159-353 32-212 (235)
59 PRK14969 DNA polymerase III su 98.6 1.2E-06 2.7E-11 88.0 15.5 178 148-347 13-217 (527)
60 PRK08727 hypothetical protein; 98.6 1.2E-06 2.6E-11 79.0 13.6 173 150-350 18-204 (233)
61 PRK09376 rho transcription ter 98.6 2.1E-07 4.6E-12 87.8 8.8 90 173-263 170-268 (416)
62 PRK09087 hypothetical protein; 98.6 1.1E-06 2.4E-11 78.6 13.2 168 150-354 20-199 (226)
63 PRK05896 DNA polymerase III su 98.6 1.5E-06 3.2E-11 87.2 15.3 197 148-352 13-223 (605)
64 PRK14970 DNA polymerase III su 98.6 3.3E-06 7.2E-11 81.7 17.3 181 149-347 15-206 (367)
65 PF05621 TniB: Bacterial TniB 98.6 3.5E-06 7.5E-11 76.9 16.0 193 158-351 44-262 (302)
66 PRK07764 DNA polymerase III su 98.6 2.2E-06 4.8E-11 89.9 16.8 177 149-347 13-218 (824)
67 PRK08903 DnaA regulatory inact 98.6 1.3E-06 2.7E-11 78.7 13.2 153 171-355 41-204 (227)
68 TIGR03345 VI_ClpV1 type VI sec 98.5 1E-06 2.3E-11 93.3 14.0 183 148-344 184-390 (852)
69 PRK09111 DNA polymerase III su 98.5 3E-06 6.4E-11 86.1 16.6 199 148-351 21-234 (598)
70 PRK03992 proteasome-activating 98.5 1.8E-06 3.8E-11 83.9 13.8 202 148-371 128-374 (389)
71 KOG2227 Pre-initiation complex 98.5 9.7E-06 2.1E-10 77.2 17.3 195 149-343 148-361 (529)
72 PRK14952 DNA polymerase III su 98.5 7E-06 1.5E-10 82.9 17.2 181 148-350 10-220 (584)
73 PRK08451 DNA polymerase III su 98.5 9.3E-06 2E-10 80.9 17.6 186 148-351 11-219 (535)
74 PRK14950 DNA polymerase III su 98.5 7E-06 1.5E-10 84.0 17.2 197 149-352 14-223 (585)
75 PF14516 AAA_35: AAA-like doma 98.5 2.2E-05 4.8E-10 74.6 19.5 199 151-357 11-246 (331)
76 PRK14971 DNA polymerase III su 98.5 8.4E-06 1.8E-10 83.4 17.3 182 149-349 15-221 (614)
77 PRK14087 dnaA chromosomal repl 98.4 8.9E-06 1.9E-10 80.3 16.7 183 173-369 142-348 (450)
78 PRK14953 DNA polymerase III su 98.4 1.2E-05 2.6E-10 80.0 17.7 181 149-351 14-221 (486)
79 PRK14954 DNA polymerase III su 98.4 8.2E-06 1.8E-10 83.1 16.7 198 149-347 14-225 (620)
80 TIGR02639 ClpA ATP-dependent C 98.4 3.3E-06 7.2E-11 88.8 14.3 158 149-320 180-358 (731)
81 TIGR00767 rho transcription te 98.4 1.2E-06 2.7E-11 83.1 9.9 92 171-263 167-267 (415)
82 PHA02544 44 clamp loader, smal 98.4 2.9E-06 6.2E-11 80.5 12.6 177 148-347 18-206 (316)
83 PRK05642 DNA replication initi 98.4 5.9E-06 1.3E-10 74.5 13.8 153 173-353 46-211 (234)
84 CHL00095 clpC Clp protease ATP 98.4 4.1E-06 8.8E-11 89.2 14.4 158 149-319 177-353 (821)
85 TIGR02881 spore_V_K stage V sp 98.4 3.1E-06 6.7E-11 77.8 11.2 135 171-321 41-192 (261)
86 PRK06305 DNA polymerase III su 98.4 1.9E-05 4.2E-10 78.0 17.2 183 149-350 15-223 (451)
87 PRK07133 DNA polymerase III su 98.4 1.4E-05 3.1E-10 81.9 16.5 178 149-348 16-217 (725)
88 COG1373 Predicted ATPase (AAA+ 98.4 8.1E-06 1.7E-10 79.4 14.1 136 156-315 22-162 (398)
89 PRK06647 DNA polymerase III su 98.3 2.4E-05 5.2E-10 79.1 17.4 195 148-350 13-220 (563)
90 PF00308 Bac_DnaA: Bacterial d 98.3 4.7E-06 1E-10 74.3 10.8 163 172-351 34-209 (219)
91 KOG0989 Replication factor C, 98.3 9E-06 1.9E-10 73.4 12.4 189 148-349 33-229 (346)
92 PRK14965 DNA polymerase III su 98.3 1.2E-05 2.7E-10 81.8 14.9 197 148-352 13-223 (576)
93 COG3903 Predicted ATPase [Gene 98.3 1.1E-06 2.3E-11 82.7 6.3 226 172-410 14-250 (414)
94 PRK14948 DNA polymerase III su 98.3 3.9E-05 8.3E-10 78.6 17.7 197 149-351 14-223 (620)
95 PRK05563 DNA polymerase III su 98.3 4.6E-05 1E-09 77.4 18.1 195 148-350 13-220 (559)
96 PTZ00454 26S protease regulato 98.3 2.6E-05 5.7E-10 75.5 15.6 176 147-344 141-351 (398)
97 TIGR00362 DnaA chromosomal rep 98.3 4.7E-05 1E-09 74.7 17.4 180 173-369 137-337 (405)
98 CHL00181 cbbX CbbX; Provisiona 98.3 2.5E-05 5.5E-10 72.5 14.5 133 173-321 60-210 (287)
99 PRK00149 dnaA chromosomal repl 98.3 5.3E-05 1.2E-09 75.3 17.4 202 173-394 149-371 (450)
100 TIGR02880 cbbX_cfxQ probable R 98.2 2.7E-05 5.8E-10 72.3 14.2 132 174-321 60-209 (284)
101 TIGR03689 pup_AAA proteasome A 98.2 1.6E-05 3.4E-10 78.9 13.3 162 148-322 179-380 (512)
102 COG3267 ExeA Type II secretory 98.2 0.00012 2.7E-09 64.7 17.0 188 160-352 40-247 (269)
103 PTZ00361 26 proteosome regulat 98.2 4.9E-05 1.1E-09 74.3 15.9 200 148-369 180-424 (438)
104 KOG2543 Origin recognition com 98.2 8.7E-05 1.9E-09 69.1 16.4 196 152-354 7-230 (438)
105 PRK07399 DNA polymerase III su 98.2 7.6E-05 1.7E-09 70.1 16.3 199 150-352 3-223 (314)
106 TIGR03346 chaperone_ClpB ATP-d 98.2 4E-05 8.7E-10 82.0 15.9 159 149-320 171-349 (852)
107 TIGR01241 FtsH_fam ATP-depende 98.2 5.1E-05 1.1E-09 76.4 15.3 201 148-370 52-296 (495)
108 PF05673 DUF815: Protein of un 98.1 0.00015 3.2E-09 64.4 15.8 53 148-200 24-80 (249)
109 PRK10865 protein disaggregatio 98.1 5E-05 1.1E-09 81.0 14.7 158 149-320 176-354 (857)
110 PRK11331 5-methylcytosine-spec 98.1 2.7E-05 5.9E-10 75.3 11.4 109 150-263 174-284 (459)
111 PRK05707 DNA polymerase III su 98.1 0.00014 3E-09 68.8 15.9 155 172-350 22-203 (328)
112 PF00004 AAA: ATPase family as 98.1 1.2E-05 2.5E-10 65.5 7.7 69 175-263 1-70 (132)
113 smart00382 AAA ATPases associa 98.1 1.8E-05 4E-10 64.7 9.0 91 173-266 3-93 (148)
114 CHL00176 ftsH cell division pr 98.1 0.00016 3.4E-09 74.3 17.3 199 149-369 181-423 (638)
115 PRK06620 hypothetical protein; 98.1 2.1E-05 4.5E-10 69.8 9.4 136 173-348 45-187 (214)
116 PRK11034 clpA ATP-dependent Cl 98.1 1.5E-05 3.4E-10 83.0 9.8 159 149-320 184-362 (758)
117 KOG0991 Replication factor C, 98.1 9.2E-05 2E-09 64.3 12.3 101 149-263 25-125 (333)
118 PRK14086 dnaA chromosomal repl 98.0 0.0003 6.5E-09 71.0 17.5 181 173-370 315-516 (617)
119 PRK14088 dnaA chromosomal repl 98.0 9.6E-05 2.1E-09 73.0 13.8 181 173-369 131-332 (440)
120 COG1222 RPT1 ATP-dependent 26S 98.0 0.00046 1E-08 63.9 17.0 201 146-370 146-393 (406)
121 COG2255 RuvB Holliday junction 98.0 0.00019 4.2E-09 64.4 13.3 231 148-410 23-289 (332)
122 TIGR00602 rad24 checkpoint pro 97.9 0.00011 2.3E-09 75.1 12.5 201 147-354 80-327 (637)
123 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00019 4.2E-09 71.3 13.4 176 149-344 226-429 (489)
124 PRK10536 hypothetical protein; 97.9 0.00018 3.9E-09 64.6 11.9 56 149-206 53-108 (262)
125 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00031 6.6E-09 69.3 14.2 94 149-262 188-293 (802)
126 PRK08769 DNA polymerase III su 97.9 0.00068 1.5E-08 63.6 16.2 173 159-350 12-208 (319)
127 COG2812 DnaX DNA polymerase II 97.9 0.00014 3.1E-09 71.8 11.8 189 149-345 14-215 (515)
128 PRK06090 DNA polymerase III su 97.8 0.0024 5.3E-08 59.9 18.6 163 160-350 12-201 (319)
129 PRK08058 DNA polymerase III su 97.8 0.00068 1.5E-08 64.4 15.1 146 153-319 7-181 (329)
130 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00058 1.3E-08 62.7 13.9 56 158-220 9-64 (262)
131 PRK06871 DNA polymerase III su 97.8 0.0015 3.4E-08 61.4 16.8 175 160-347 11-200 (325)
132 TIGR01243 CDC48 AAA family ATP 97.8 0.00051 1.1E-08 72.7 15.2 173 150-344 452-657 (733)
133 TIGR00763 lon ATP-dependent pr 97.8 0.00091 2E-08 71.0 17.0 157 152-320 321-505 (775)
134 PRK12422 chromosomal replicati 97.8 0.00047 1E-08 68.0 13.9 153 173-344 142-307 (445)
135 COG0593 DnaA ATPase involved i 97.8 0.00046 1E-08 66.2 13.2 178 172-371 113-315 (408)
136 PRK12608 transcription termina 97.8 0.00026 5.6E-09 67.1 11.2 100 161-261 121-230 (380)
137 PRK10787 DNA-binding ATP-depen 97.8 0.0029 6.2E-08 66.9 20.0 158 151-320 322-506 (784)
138 KOG2004 Mitochondrial ATP-depe 97.7 0.0016 3.5E-08 65.6 16.6 156 151-320 411-596 (906)
139 PHA00729 NTP-binding motif con 97.7 0.0003 6.5E-09 62.1 10.4 36 162-197 7-42 (226)
140 PRK08116 hypothetical protein; 97.7 0.00013 2.9E-09 67.0 8.5 102 173-289 115-221 (268)
141 COG1223 Predicted ATPase (AAA+ 97.7 0.00051 1.1E-08 60.8 11.5 172 150-343 120-318 (368)
142 PRK08118 topology modulation p 97.7 2.2E-05 4.7E-10 66.9 2.7 34 174-207 3-37 (167)
143 PF10443 RNA12: RNA12 protein; 97.7 0.002 4.3E-08 61.8 15.8 192 156-357 1-285 (431)
144 PF13177 DNA_pol3_delta2: DNA 97.7 0.00042 9E-09 58.7 10.1 137 155-308 1-162 (162)
145 PF04665 Pox_A32: Poxvirus A32 97.7 0.00058 1.3E-08 61.0 11.3 36 173-210 14-49 (241)
146 PRK04132 replication factor C 97.7 0.0013 2.8E-08 69.2 15.5 159 178-353 570-734 (846)
147 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00055 1.2E-08 73.0 13.1 46 152-197 567-621 (852)
148 KOG0731 AAA+-type ATPase conta 97.6 0.00078 1.7E-08 69.0 13.1 178 150-348 310-522 (774)
149 COG0466 Lon ATP-dependent Lon 97.6 0.00074 1.6E-08 68.1 12.3 155 152-320 324-508 (782)
150 TIGR02639 ClpA ATP-dependent C 97.6 0.00064 1.4E-08 71.7 12.7 102 152-263 455-565 (731)
151 TIGR02902 spore_lonB ATP-depen 97.6 0.00032 6.9E-09 71.0 9.9 50 148-197 62-111 (531)
152 KOG0734 AAA+-type ATPase conta 97.6 0.00022 4.8E-09 69.1 7.8 94 150-263 303-408 (752)
153 KOG0739 AAA+-type ATPase [Post 97.5 0.0018 3.8E-08 58.6 12.5 171 151-343 133-334 (439)
154 TIGR02237 recomb_radB DNA repa 97.5 0.00064 1.4E-08 60.2 9.5 86 172-261 12-107 (209)
155 PRK06964 DNA polymerase III su 97.5 0.0065 1.4E-07 57.6 16.6 102 238-348 115-223 (342)
156 PF00448 SRP54: SRP54-type pro 97.5 0.00074 1.6E-08 59.0 9.4 88 172-261 1-93 (196)
157 PF07693 KAP_NTPase: KAP famil 97.5 0.0095 2.1E-07 56.6 17.9 43 157-199 2-47 (325)
158 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0032 7E-08 62.4 14.4 150 172-343 545-717 (802)
159 PRK07993 DNA polymerase III su 97.5 0.0055 1.2E-07 58.2 15.8 173 160-347 11-201 (334)
160 TIGR01243 CDC48 AAA family ATP 97.5 0.0013 2.8E-08 69.7 12.8 174 149-344 176-381 (733)
161 KOG0730 AAA+-type ATPase [Post 97.5 0.0016 3.4E-08 65.1 12.3 156 148-323 431-618 (693)
162 COG0542 clpA ATP-binding subun 97.5 0.001 2.2E-08 68.6 11.3 160 148-320 167-346 (786)
163 PRK08181 transposase; Validate 97.5 0.00027 5.8E-09 64.8 6.4 99 173-289 107-209 (269)
164 PRK07261 topology modulation p 97.4 0.00055 1.2E-08 58.5 7.6 34 174-207 2-36 (171)
165 KOG2035 Replication factor C, 97.4 0.0018 3.8E-08 58.1 10.7 211 152-376 14-265 (351)
166 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0008 1.7E-08 60.8 8.8 90 172-262 19-126 (235)
167 COG0542 clpA ATP-binding subun 97.4 0.008 1.7E-07 62.3 16.5 114 152-273 492-617 (786)
168 KOG2228 Origin recognition com 97.4 0.012 2.5E-07 54.5 15.5 168 151-321 24-220 (408)
169 PRK08939 primosomal protein Dn 97.4 0.00091 2E-08 62.6 8.8 116 155-288 135-260 (306)
170 COG0470 HolB ATPase involved i 97.3 0.0026 5.5E-08 60.4 12.1 141 153-309 3-170 (325)
171 PRK10865 protein disaggregatio 97.3 0.0018 4E-08 69.2 12.1 46 152-197 569-623 (857)
172 PRK06526 transposase; Provisio 97.3 0.00026 5.5E-09 64.5 4.8 74 172-263 98-171 (254)
173 KOG0735 AAA+-type ATPase [Post 97.3 0.0031 6.6E-08 63.6 12.0 153 172-343 431-608 (952)
174 TIGR03499 FlhF flagellar biosy 97.3 0.0019 4.1E-08 60.0 10.0 87 171-260 193-281 (282)
175 PRK12727 flagellar biosynthesi 97.3 0.018 3.8E-07 57.3 16.9 88 172-261 350-438 (559)
176 PF01695 IstB_IS21: IstB-like 97.3 0.0004 8.6E-09 59.7 5.0 74 172-263 47-120 (178)
177 PRK10733 hflB ATP-dependent me 97.3 0.0026 5.6E-08 66.0 11.8 148 173-342 186-355 (644)
178 PRK11034 clpA ATP-dependent Cl 97.3 0.0021 4.6E-08 67.4 11.1 101 153-263 460-569 (758)
179 PF13207 AAA_17: AAA domain; P 97.3 0.00026 5.6E-09 56.7 3.6 24 174-197 1-24 (121)
180 PRK12377 putative replication 97.2 0.0017 3.8E-08 58.7 9.1 73 172-261 101-173 (248)
181 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0011 2.3E-08 71.3 8.9 105 152-263 566-679 (852)
182 KOG0736 Peroxisome assembly fa 97.2 0.019 4.1E-07 58.7 16.5 171 148-342 669-877 (953)
183 KOG1969 DNA replication checkp 97.2 0.0011 2.3E-08 66.9 7.7 75 171-263 325-399 (877)
184 KOG0741 AAA+-type ATPase [Post 97.2 0.012 2.5E-07 57.6 14.3 158 171-354 537-716 (744)
185 PLN00020 ribulose bisphosphate 97.2 0.0017 3.6E-08 61.2 8.5 30 170-199 146-175 (413)
186 KOG1514 Origin recognition com 97.2 0.02 4.3E-07 57.9 16.3 201 151-353 396-624 (767)
187 KOG0743 AAA+-type ATPase [Post 97.2 0.013 2.8E-07 56.4 14.3 166 173-370 236-432 (457)
188 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00068 1.5E-08 64.0 5.7 47 152-198 52-104 (361)
189 COG1484 DnaC DNA replication p 97.2 0.0028 6.1E-08 57.7 9.6 76 171-263 104-179 (254)
190 PRK09183 transposase/IS protei 97.2 0.0012 2.6E-08 60.4 7.2 26 173-198 103-128 (259)
191 PRK14722 flhF flagellar biosyn 97.1 0.0027 5.8E-08 60.8 9.6 89 172-262 137-226 (374)
192 PRK06696 uridine kinase; Valid 97.1 0.00078 1.7E-08 60.3 5.7 44 155-198 2-48 (223)
193 COG2607 Predicted ATPase (AAA+ 97.1 0.0035 7.6E-08 55.1 9.3 115 149-289 58-183 (287)
194 cd01393 recA_like RecA is a b 97.1 0.0026 5.7E-08 57.0 9.0 49 172-220 19-71 (226)
195 TIGR02012 tigrfam_recA protein 97.1 0.0026 5.7E-08 59.6 9.1 83 172-261 55-143 (321)
196 CHL00095 clpC Clp protease ATP 97.1 0.0023 4.9E-08 68.5 9.8 106 151-263 509-623 (821)
197 PRK05541 adenylylsulfate kinas 97.1 0.0019 4.1E-08 55.5 7.6 36 171-208 6-41 (176)
198 TIGR02238 recomb_DMC1 meiotic 97.1 0.0028 6.1E-08 59.5 9.2 89 172-261 96-201 (313)
199 PRK09270 nucleoside triphospha 97.1 0.0045 9.9E-08 55.6 10.2 30 170-199 31-60 (229)
200 PRK04296 thymidine kinase; Pro 97.1 0.00071 1.5E-08 58.9 4.7 110 173-290 3-117 (190)
201 cd01120 RecA-like_NTPases RecA 97.1 0.0051 1.1E-07 51.6 9.9 39 174-214 1-39 (165)
202 PRK08533 flagellar accessory p 97.0 0.0053 1.1E-07 55.2 10.2 86 172-262 24-128 (230)
203 COG0464 SpoVK ATPases of the A 97.0 0.008 1.7E-07 60.7 12.6 152 171-342 275-445 (494)
204 PRK07952 DNA replication prote 97.0 0.006 1.3E-07 55.1 10.4 76 172-263 99-174 (244)
205 PRK08699 DNA polymerase III su 97.0 0.009 2E-07 56.5 12.0 89 250-347 112-203 (325)
206 cd00983 recA RecA is a bacter 97.0 0.0035 7.5E-08 58.8 9.0 83 172-261 55-143 (325)
207 PRK09354 recA recombinase A; P 97.0 0.0039 8.5E-08 58.9 9.4 83 172-261 60-148 (349)
208 PRK09361 radB DNA repair and r 97.0 0.0035 7.5E-08 56.2 8.8 45 172-219 23-67 (225)
209 PF03215 Rad17: Rad17 cell cyc 97.0 0.0046 9.9E-08 62.0 10.3 55 152-210 20-79 (519)
210 PF08423 Rad51: Rad51; InterP 97.0 0.0067 1.5E-07 55.4 10.5 88 173-261 39-143 (256)
211 PLN03187 meiotic recombination 97.0 0.0047 1E-07 58.6 9.5 89 172-261 126-231 (344)
212 COG2884 FtsE Predicted ATPase 97.0 0.0032 6.8E-08 53.4 7.1 27 172-198 28-54 (223)
213 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0094 2E-07 54.4 10.7 89 173-262 70-174 (274)
214 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0079 1.7E-07 54.4 10.3 48 172-223 21-68 (237)
215 PRK11889 flhF flagellar biosyn 96.9 0.012 2.5E-07 56.4 11.6 89 171-261 240-330 (436)
216 TIGR02236 recomb_radA DNA repa 96.9 0.0073 1.6E-07 57.0 10.4 57 172-229 95-155 (310)
217 PRK04301 radA DNA repair and r 96.9 0.0077 1.7E-07 57.0 10.4 89 172-261 102-208 (317)
218 TIGR01069 mutS2 MutS2 family p 96.9 0.0017 3.6E-08 68.5 6.0 184 171-371 321-522 (771)
219 PF05659 RPW8: Arabidopsis bro 96.9 0.02 4.3E-07 47.2 11.1 106 5-124 8-113 (147)
220 PHA02244 ATPase-like protein 96.9 0.0062 1.3E-07 57.8 9.1 35 161-197 110-144 (383)
221 TIGR02858 spore_III_AA stage I 96.9 0.0081 1.8E-07 55.1 9.8 117 169-291 108-231 (270)
222 COG1066 Sms Predicted ATP-depe 96.9 0.0063 1.4E-07 57.7 9.0 84 173-262 94-179 (456)
223 PTZ00494 tuzin-like protein; P 96.9 0.11 2.4E-06 50.2 17.3 165 147-320 367-544 (664)
224 TIGR00554 panK_bact pantothena 96.8 0.0078 1.7E-07 55.7 9.6 28 170-197 60-87 (290)
225 cd03115 SRP The signal recogni 96.8 0.0063 1.4E-07 52.1 8.5 54 174-229 2-56 (173)
226 PRK12724 flagellar biosynthesi 96.8 0.0065 1.4E-07 58.7 9.1 85 172-260 223-308 (432)
227 COG1102 Cmk Cytidylate kinase 96.8 0.0017 3.8E-08 53.4 4.5 46 174-232 2-47 (179)
228 PRK06921 hypothetical protein; 96.8 0.0074 1.6E-07 55.4 9.2 72 171-261 116-187 (266)
229 PTZ00035 Rad51 protein; Provis 96.8 0.0091 2E-07 56.8 10.1 90 172-262 118-224 (337)
230 PRK06547 hypothetical protein; 96.8 0.002 4.3E-08 55.0 5.0 35 163-197 6-40 (172)
231 cd02025 PanK Pantothenate kina 96.8 0.0085 1.8E-07 53.4 9.1 24 174-197 1-24 (220)
232 KOG0729 26S proteasome regulat 96.8 0.0097 2.1E-07 53.0 9.1 93 149-261 175-280 (435)
233 cd01394 radB RadB. The archaea 96.8 0.0075 1.6E-07 53.7 8.8 42 172-215 19-60 (218)
234 TIGR01425 SRP54_euk signal rec 96.8 0.12 2.6E-06 50.5 17.5 28 171-198 99-126 (429)
235 PRK06835 DNA replication prote 96.8 0.0039 8.5E-08 58.9 7.2 101 173-289 184-289 (329)
236 cd01124 KaiC KaiC is a circadi 96.8 0.0073 1.6E-07 52.3 8.5 45 174-222 1-45 (187)
237 COG1419 FlhF Flagellar GTP-bin 96.8 0.021 4.6E-07 54.5 11.9 99 160-261 187-291 (407)
238 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0085 1.9E-07 56.5 9.3 89 172-261 96-201 (316)
239 PRK12726 flagellar biosynthesi 96.7 0.015 3.2E-07 55.5 10.5 90 171-262 205-296 (407)
240 PRK15455 PrkA family serine pr 96.7 0.0021 4.5E-08 64.1 5.1 49 150-198 75-129 (644)
241 PRK04328 hypothetical protein; 96.7 0.011 2.3E-07 53.9 9.4 41 171-213 22-62 (249)
242 PLN03186 DNA repair protein RA 96.7 0.0081 1.8E-07 57.0 8.9 89 172-261 123-228 (342)
243 PRK15429 formate hydrogenlyase 96.7 0.051 1.1E-06 57.3 15.6 48 150-197 375-424 (686)
244 PF07728 AAA_5: AAA domain (dy 96.7 0.0041 8.8E-08 51.1 6.0 42 175-221 2-43 (139)
245 cd01131 PilT Pilus retraction 96.7 0.0032 6.8E-08 55.2 5.4 110 173-292 2-112 (198)
246 PRK07667 uridine kinase; Provi 96.7 0.0029 6.3E-08 55.2 5.1 37 162-198 5-43 (193)
247 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0093 2E-07 49.9 7.8 117 173-290 3-139 (159)
248 PRK00771 signal recognition pa 96.7 0.017 3.6E-07 56.8 10.9 59 171-231 94-153 (437)
249 CHL00206 ycf2 Ycf2; Provisiona 96.7 0.025 5.4E-07 63.7 13.1 29 171-199 1629-1657(2281)
250 COG1618 Predicted nucleotide k 96.7 0.0027 5.9E-08 52.3 4.5 28 173-200 6-33 (179)
251 PRK05439 pantothenate kinase; 96.7 0.016 3.5E-07 54.1 10.2 81 170-252 84-166 (311)
252 PF13238 AAA_18: AAA domain; P 96.7 0.0016 3.6E-08 52.4 3.3 22 175-196 1-22 (129)
253 TIGR01817 nifA Nif-specific re 96.6 0.021 4.6E-07 58.2 12.0 50 148-197 193-244 (534)
254 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.003 6.6E-08 56.0 5.2 24 172-195 29-52 (213)
255 PRK06067 flagellar accessory p 96.6 0.017 3.7E-07 52.0 10.2 86 171-261 24-130 (234)
256 PRK12723 flagellar biosynthesi 96.6 0.013 2.9E-07 56.5 9.9 90 171-262 173-265 (388)
257 PRK14974 cell division protein 96.6 0.021 4.6E-07 54.0 11.1 90 171-263 139-234 (336)
258 cd01121 Sms Sms (bacterial rad 96.6 0.0071 1.5E-07 58.2 8.0 86 172-262 82-169 (372)
259 COG4608 AppF ABC-type oligopep 96.6 0.025 5.4E-07 51.0 10.8 143 171-317 38-199 (268)
260 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0059 1.3E-07 52.7 6.7 24 174-197 1-24 (183)
261 PF13481 AAA_25: AAA domain; P 96.6 0.011 2.4E-07 51.4 8.5 50 173-224 33-90 (193)
262 TIGR00959 ffh signal recogniti 96.6 0.017 3.7E-07 56.5 10.5 27 171-197 98-124 (428)
263 PRK07132 DNA polymerase III su 96.6 0.16 3.4E-06 47.4 16.4 164 162-348 7-183 (299)
264 PF14532 Sigma54_activ_2: Sigm 96.6 0.0012 2.6E-08 54.2 2.2 27 172-198 21-47 (138)
265 PF00485 PRK: Phosphoribulokin 96.6 0.0022 4.7E-08 56.1 3.9 25 174-198 1-25 (194)
266 cd00544 CobU Adenosylcobinamid 96.6 0.011 2.3E-07 50.4 7.9 80 175-260 2-82 (169)
267 COG1875 NYN ribonuclease and A 96.6 0.024 5.3E-07 53.0 10.7 135 153-291 226-390 (436)
268 COG0194 Gmk Guanylate kinase [ 96.6 0.013 2.8E-07 49.7 8.2 25 172-196 4-28 (191)
269 PRK10867 signal recognition pa 96.6 0.016 3.4E-07 56.8 10.0 29 170-198 98-126 (433)
270 PRK05703 flhF flagellar biosyn 96.6 0.011 2.5E-07 58.0 9.1 87 172-261 221-309 (424)
271 KOG0728 26S proteasome regulat 96.6 0.13 2.7E-06 45.8 14.3 180 170-369 179-388 (404)
272 PRK05480 uridine/cytidine kina 96.5 0.0024 5.2E-08 56.5 3.9 27 170-196 4-30 (209)
273 PRK13531 regulatory ATPase Rav 96.5 0.0045 9.6E-08 60.9 5.9 50 152-203 21-70 (498)
274 PF00006 ATP-synt_ab: ATP synt 96.5 0.011 2.5E-07 52.2 7.9 85 173-261 16-115 (215)
275 PF12775 AAA_7: P-loop contain 96.5 0.0023 5.1E-08 58.9 3.7 88 161-262 23-111 (272)
276 PF01583 APS_kinase: Adenylyls 96.5 0.004 8.7E-08 51.8 4.7 28 172-199 2-29 (156)
277 PRK08233 hypothetical protein; 96.5 0.0024 5.1E-08 55.1 3.5 26 172-197 3-28 (182)
278 cd02019 NK Nucleoside/nucleoti 96.5 0.0025 5.5E-08 45.3 3.0 23 174-196 1-23 (69)
279 PRK00409 recombination and DNA 96.5 0.017 3.7E-07 61.2 10.4 180 171-371 326-527 (782)
280 COG0465 HflB ATP-dependent Zn 96.5 0.034 7.3E-07 56.1 11.9 95 149-263 148-254 (596)
281 PF03308 ArgK: ArgK protein; 96.5 0.0069 1.5E-07 54.3 6.2 61 160-220 15-77 (266)
282 PF10236 DAP3: Mitochondrial r 96.5 0.35 7.7E-06 45.5 18.1 47 301-347 258-306 (309)
283 PF13671 AAA_33: AAA domain; P 96.5 0.0028 6E-08 52.2 3.6 24 174-197 1-24 (143)
284 COG0563 Adk Adenylate kinase a 96.5 0.006 1.3E-07 52.3 5.7 25 174-198 2-26 (178)
285 KOG0737 AAA+-type ATPase [Post 96.5 0.032 7E-07 52.3 10.6 29 171-199 126-154 (386)
286 COG1703 ArgK Putative periplas 96.5 0.0053 1.2E-07 55.8 5.4 62 161-222 38-101 (323)
287 cd01135 V_A-ATPase_B V/A-type 96.4 0.027 5.9E-07 51.3 10.0 97 173-269 70-185 (276)
288 PTZ00301 uridine kinase; Provi 96.4 0.003 6.4E-08 55.8 3.7 26 172-197 3-28 (210)
289 cd03247 ABCC_cytochrome_bd The 96.4 0.011 2.4E-07 50.9 7.1 26 172-197 28-53 (178)
290 KOG0735 AAA+-type ATPase [Post 96.4 0.069 1.5E-06 54.2 13.4 152 173-346 702-872 (952)
291 cd03223 ABCD_peroxisomal_ALDP 96.4 0.02 4.4E-07 48.5 8.6 26 172-197 27-52 (166)
292 TIGR02974 phageshock_pspF psp 96.4 0.032 6.9E-07 53.0 10.7 44 154-197 2-47 (329)
293 PRK06762 hypothetical protein; 96.4 0.0031 6.8E-08 53.5 3.6 25 172-196 2-26 (166)
294 cd03214 ABC_Iron-Siderophores_ 96.4 0.022 4.8E-07 49.1 8.8 116 172-291 25-160 (180)
295 COG0468 RecA RecA/RadA recombi 96.4 0.03 6.6E-07 51.3 10.0 87 172-262 60-152 (279)
296 TIGR00708 cobA cob(I)alamin ad 96.4 0.029 6.2E-07 47.6 9.0 118 172-290 5-141 (173)
297 PRK14723 flhF flagellar biosyn 96.3 0.041 9E-07 57.3 11.9 59 172-230 185-244 (767)
298 TIGR00235 udk uridine kinase. 96.3 0.0035 7.6E-08 55.4 3.7 27 171-197 5-31 (207)
299 PRK14721 flhF flagellar biosyn 96.3 0.037 8.1E-07 53.9 10.8 87 172-260 191-278 (420)
300 COG0541 Ffh Signal recognition 96.3 0.76 1.6E-05 44.5 19.0 58 171-230 99-157 (451)
301 PF00154 RecA: recA bacterial 96.3 0.061 1.3E-06 50.4 11.6 85 172-263 53-143 (322)
302 COG1120 FepC ABC-type cobalami 96.3 0.026 5.7E-07 51.0 8.9 26 172-197 28-53 (258)
303 PF06745 KaiC: KaiC; InterPro 96.3 0.011 2.4E-07 52.9 6.7 87 171-261 18-125 (226)
304 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.028 6E-07 51.5 9.3 39 172-212 36-74 (259)
305 PF03205 MobB: Molybdopterin g 96.3 0.0049 1.1E-07 50.7 3.9 39 173-212 1-39 (140)
306 KOG0727 26S proteasome regulat 96.3 0.024 5.3E-07 50.2 8.3 72 171-262 188-259 (408)
307 COG3640 CooC CO dehydrogenase 96.3 0.0099 2.1E-07 52.2 5.8 43 174-217 2-44 (255)
308 TIGR00064 ftsY signal recognit 96.3 0.031 6.8E-07 51.5 9.6 89 170-261 70-164 (272)
309 PRK12597 F0F1 ATP synthase sub 96.2 0.028 6.2E-07 55.3 9.6 89 172-261 143-247 (461)
310 PRK13765 ATP-dependent proteas 96.2 0.011 2.4E-07 60.7 7.1 78 148-229 28-105 (637)
311 PRK01184 hypothetical protein; 96.2 0.026 5.6E-07 48.8 8.5 21 173-194 2-22 (184)
312 PRK06995 flhF flagellar biosyn 96.2 0.032 6.9E-07 55.3 9.9 60 172-231 256-316 (484)
313 smart00534 MUTSac ATPase domai 96.2 0.0034 7.4E-08 54.4 2.8 22 174-195 1-22 (185)
314 PF06309 Torsin: Torsin; Inte 96.2 0.068 1.5E-06 42.5 9.7 38 159-196 37-77 (127)
315 PF13245 AAA_19: Part of AAA d 96.2 0.017 3.6E-07 41.9 5.9 26 171-196 9-35 (76)
316 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0047 1E-07 53.5 3.7 26 171-196 2-27 (188)
317 COG1428 Deoxynucleoside kinase 96.2 0.01 2.2E-07 51.4 5.4 47 172-223 4-50 (216)
318 PRK08972 fliI flagellum-specif 96.2 0.019 4E-07 56.0 7.9 88 171-262 161-263 (444)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.025 5.3E-07 46.8 7.7 26 172-197 26-51 (144)
320 TIGR02655 circ_KaiC circadian 96.2 0.031 6.7E-07 56.2 9.7 86 171-261 262-363 (484)
321 COG0572 Udk Uridine kinase [Nu 96.2 0.005 1.1E-07 53.8 3.5 28 171-198 7-34 (218)
322 PF08433 KTI12: Chromatin asso 96.2 0.0096 2.1E-07 54.7 5.6 26 173-198 2-27 (270)
323 PRK00131 aroK shikimate kinase 96.1 0.0056 1.2E-07 52.2 3.8 27 171-197 3-29 (175)
324 PRK09519 recA DNA recombinatio 96.1 0.027 5.8E-07 58.9 9.2 83 172-261 60-148 (790)
325 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.024 5.3E-07 51.0 7.8 24 173-196 31-54 (254)
326 PRK05917 DNA polymerase III su 96.1 0.16 3.4E-06 47.0 13.2 125 161-307 7-154 (290)
327 PRK11823 DNA repair protein Ra 96.1 0.017 3.6E-07 57.3 7.5 85 172-261 80-166 (446)
328 PF00910 RNA_helicase: RNA hel 96.1 0.0044 9.5E-08 48.4 2.7 24 175-198 1-24 (107)
329 CHL00081 chlI Mg-protoporyphyr 96.1 0.0092 2E-07 56.7 5.3 50 148-197 14-63 (350)
330 PRK03839 putative kinase; Prov 96.1 0.0054 1.2E-07 52.9 3.5 24 174-197 2-25 (180)
331 KOG3347 Predicted nucleotide k 96.1 0.0054 1.2E-07 49.8 3.0 34 172-212 7-40 (176)
332 cd03216 ABC_Carb_Monos_I This 96.1 0.011 2.4E-07 50.0 5.3 112 172-291 26-144 (163)
333 PRK11608 pspF phage shock prot 96.1 0.015 3.3E-07 55.1 6.7 46 151-196 6-53 (326)
334 COG4240 Predicted kinase [Gene 96.1 0.047 1E-06 47.7 8.8 83 169-252 47-134 (300)
335 PRK04040 adenylate kinase; Pro 96.0 0.006 1.3E-07 52.9 3.6 26 172-197 2-27 (188)
336 PTZ00088 adenylate kinase 1; P 96.0 0.0094 2E-07 53.4 4.8 24 174-197 8-31 (229)
337 TIGR01041 ATP_syn_B_arch ATP s 96.0 0.039 8.5E-07 54.4 9.4 90 173-262 142-249 (458)
338 PRK10751 molybdopterin-guanine 96.0 0.0078 1.7E-07 51.1 3.8 28 171-198 5-32 (173)
339 TIGR03305 alt_F1F0_F1_bet alte 96.0 0.04 8.7E-07 54.0 9.2 89 173-262 139-243 (449)
340 PF13086 AAA_11: AAA domain; P 96.0 0.019 4.1E-07 51.4 6.6 64 160-225 7-75 (236)
341 TIGR00416 sms DNA repair prote 96.0 0.03 6.4E-07 55.6 8.4 86 172-262 94-181 (454)
342 PRK06002 fliI flagellum-specif 96.0 0.028 6.2E-07 55.0 8.1 88 172-262 165-265 (450)
343 cd02027 APSK Adenosine 5'-phos 96.0 0.057 1.2E-06 44.9 9.0 24 174-197 1-24 (149)
344 cd02023 UMPK Uridine monophosp 95.9 0.0055 1.2E-07 53.7 2.9 23 174-196 1-23 (198)
345 PRK08927 fliI flagellum-specif 95.9 0.059 1.3E-06 52.7 10.2 88 171-262 157-259 (442)
346 PRK09280 F0F1 ATP synthase sub 95.9 0.064 1.4E-06 52.8 10.4 89 172-261 144-248 (463)
347 PRK09435 membrane ATPase/prote 95.9 0.04 8.6E-07 52.1 8.7 38 162-199 44-83 (332)
348 cd03228 ABCC_MRP_Like The MRP 95.9 0.026 5.7E-07 48.1 6.9 26 172-197 28-53 (171)
349 PF00625 Guanylate_kin: Guanyl 95.9 0.013 2.7E-07 50.7 5.0 38 172-211 2-39 (183)
350 TIGR00750 lao LAO/AO transport 95.9 0.035 7.6E-07 52.1 8.3 30 170-199 32-61 (300)
351 TIGR02030 BchI-ChlI magnesium 95.9 0.014 3.1E-07 55.3 5.7 48 149-196 2-49 (337)
352 PRK15453 phosphoribulokinase; 95.9 0.061 1.3E-06 49.2 9.4 28 170-197 3-30 (290)
353 PRK05342 clpX ATP-dependent pr 95.9 0.024 5.3E-07 55.3 7.4 46 152-197 72-133 (412)
354 KOG0740 AAA+-type ATPase [Post 95.9 0.11 2.3E-06 50.4 11.4 72 172-263 186-257 (428)
355 cd03284 ABC_MutS1 MutS1 homolo 95.9 0.0092 2E-07 53.0 4.1 22 173-194 31-52 (216)
356 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.098 2.1E-06 46.9 10.8 39 172-212 20-58 (229)
357 TIGR02322 phosphon_PhnN phosph 95.9 0.0073 1.6E-07 52.0 3.3 25 173-197 2-26 (179)
358 cd00227 CPT Chloramphenicol (C 95.9 0.0083 1.8E-07 51.5 3.6 25 173-197 3-27 (175)
359 cd01136 ATPase_flagellum-secre 95.9 0.055 1.2E-06 50.9 9.3 87 172-262 69-170 (326)
360 cd03285 ABC_MSH2_euk MutS2 hom 95.8 0.0056 1.2E-07 54.7 2.5 25 171-195 29-53 (222)
361 PRK00625 shikimate kinase; Pro 95.8 0.0083 1.8E-07 51.2 3.4 24 174-197 2-25 (173)
362 cd03246 ABCC_Protease_Secretio 95.8 0.024 5.1E-07 48.5 6.3 26 172-197 28-53 (173)
363 COG4088 Predicted nucleotide k 95.8 0.0076 1.6E-07 51.7 3.1 27 173-199 2-28 (261)
364 cd02024 NRK1 Nicotinamide ribo 95.8 0.007 1.5E-07 52.3 2.9 23 174-196 1-23 (187)
365 PF02562 PhoH: PhoH-like prote 95.8 0.015 3.3E-07 50.7 5.1 122 160-291 9-158 (205)
366 KOG0744 AAA+-type ATPase [Post 95.8 0.036 7.8E-07 51.0 7.4 27 172-198 177-203 (423)
367 TIGR00150 HI0065_YjeE ATPase, 95.8 0.019 4.1E-07 46.5 5.1 27 172-198 22-48 (133)
368 cd02021 GntK Gluconate kinase 95.8 0.0075 1.6E-07 50.2 2.9 23 174-196 1-23 (150)
369 KOG0652 26S proteasome regulat 95.8 0.064 1.4E-06 47.9 8.7 53 145-197 165-230 (424)
370 PRK00889 adenylylsulfate kinas 95.8 0.011 2.3E-07 50.7 4.0 28 171-198 3-30 (175)
371 cd03287 ABC_MSH3_euk MutS3 hom 95.8 0.014 2.9E-07 52.1 4.6 23 172-194 31-53 (222)
372 PRK12678 transcription termina 95.8 0.042 9E-07 55.0 8.2 89 172-261 416-513 (672)
373 TIGR00073 hypB hydrogenase acc 95.8 0.011 2.4E-07 52.3 4.0 31 167-197 17-47 (207)
374 cd02029 PRK_like Phosphoribulo 95.7 0.056 1.2E-06 49.1 8.4 76 174-251 1-84 (277)
375 KOG0651 26S proteasome regulat 95.7 0.027 5.9E-07 51.5 6.4 102 171-292 165-284 (388)
376 TIGR00764 lon_rel lon-related 95.7 0.03 6.6E-07 57.6 7.7 75 150-228 17-91 (608)
377 TIGR01040 V-ATPase_V1_B V-type 95.7 0.04 8.7E-07 53.8 8.0 89 173-261 142-257 (466)
378 PRK08149 ATP synthase SpaL; Va 95.7 0.064 1.4E-06 52.4 9.4 87 172-262 151-252 (428)
379 COG2274 SunT ABC-type bacterio 95.7 0.042 9E-07 57.4 8.7 26 172-197 499-524 (709)
380 PRK06217 hypothetical protein; 95.7 0.0085 1.8E-07 51.8 3.2 25 174-198 3-27 (183)
381 cd01122 GP4d_helicase GP4d_hel 95.7 0.11 2.3E-06 48.0 10.7 51 173-226 31-81 (271)
382 PRK05800 cobU adenosylcobinami 95.7 0.034 7.3E-07 47.4 6.8 80 174-260 3-85 (170)
383 cd02020 CMPK Cytidine monophos 95.7 0.0085 1.8E-07 49.5 3.0 24 174-197 1-24 (147)
384 KOG1532 GTPase XAB1, interacts 95.7 0.013 2.8E-07 52.5 4.2 60 171-232 18-88 (366)
385 cd00046 DEXDc DEAD-like helica 95.7 0.032 6.9E-07 45.0 6.4 36 174-209 2-37 (144)
386 cd02028 UMPK_like Uridine mono 95.7 0.009 2E-07 51.4 3.2 25 174-198 1-25 (179)
387 PRK14527 adenylate kinase; Pro 95.7 0.011 2.4E-07 51.4 3.8 28 170-197 4-31 (191)
388 PTZ00185 ATPase alpha subunit; 95.7 0.081 1.7E-06 52.4 9.8 90 173-262 190-300 (574)
389 PRK13975 thymidylate kinase; P 95.7 0.024 5.3E-07 49.5 5.9 26 173-198 3-28 (196)
390 COG0467 RAD55 RecA-superfamily 95.7 0.019 4.1E-07 52.7 5.4 42 171-214 22-63 (260)
391 PRK03846 adenylylsulfate kinas 95.7 0.018 3.9E-07 50.5 5.0 30 169-198 21-50 (198)
392 COG0714 MoxR-like ATPases [Gen 95.7 0.033 7.2E-07 53.0 7.2 63 153-222 26-88 (329)
393 PRK06936 type III secretion sy 95.7 0.069 1.5E-06 52.2 9.3 88 171-262 161-263 (439)
394 TIGR03263 guanyl_kin guanylate 95.7 0.0091 2E-07 51.4 3.1 24 173-196 2-25 (180)
395 PRK11388 DNA-binding transcrip 95.6 0.13 2.9E-06 53.7 12.2 47 150-197 324-373 (638)
396 PF08477 Miro: Miro-like prote 95.6 0.011 2.4E-07 46.9 3.2 23 175-197 2-24 (119)
397 PF03266 NTPase_1: NTPase; In 95.6 0.021 4.5E-07 48.5 5.0 24 175-198 2-25 (168)
398 PF09848 DUF2075: Uncharacteri 95.6 0.047 1E-06 52.5 8.1 41 173-213 2-42 (352)
399 PRK00300 gmk guanylate kinase; 95.6 0.012 2.6E-07 51.9 3.7 25 172-196 5-29 (205)
400 cd01134 V_A-ATPase_A V/A-type 95.6 0.081 1.7E-06 49.9 9.2 49 172-224 157-206 (369)
401 PRK14737 gmk guanylate kinase; 95.6 0.011 2.4E-07 51.1 3.4 26 171-196 3-28 (186)
402 PRK13407 bchI magnesium chelat 95.6 0.019 4E-07 54.4 5.1 48 149-196 6-53 (334)
403 PF07726 AAA_3: ATPase family 95.6 0.015 3.3E-07 46.4 3.8 25 175-199 2-26 (131)
404 PRK10463 hydrogenase nickel in 95.6 0.025 5.4E-07 52.1 5.7 94 163-262 95-195 (290)
405 TIGR01351 adk adenylate kinase 95.6 0.051 1.1E-06 48.1 7.6 23 175-197 2-24 (210)
406 PF02374 ArsA_ATPase: Anion-tr 95.6 0.024 5.2E-07 53.2 5.8 46 173-220 2-47 (305)
407 TIGR00390 hslU ATP-dependent p 95.6 0.041 8.8E-07 53.2 7.3 47 152-198 13-73 (441)
408 PRK04196 V-type ATP synthase s 95.6 0.071 1.5E-06 52.7 9.2 89 172-261 143-250 (460)
409 COG0529 CysC Adenylylsulfate k 95.6 0.025 5.5E-07 47.5 5.1 31 169-199 20-50 (197)
410 cd01125 repA Hexameric Replica 95.6 0.084 1.8E-06 47.7 9.2 141 174-314 3-198 (239)
411 PF08298 AAA_PrkA: PrkA AAA do 95.6 0.024 5.2E-07 53.3 5.6 92 151-247 61-165 (358)
412 TIGR01650 PD_CobS cobaltochela 95.6 0.043 9.2E-07 51.5 7.2 61 153-220 47-107 (327)
413 TIGR03498 FliI_clade3 flagella 95.6 0.067 1.4E-06 52.2 8.9 88 172-262 140-241 (418)
414 TIGR01039 atpD ATP synthase, F 95.6 0.1 2.3E-06 51.2 10.1 90 172-262 143-248 (461)
415 cd00071 GMPK Guanosine monopho 95.5 0.01 2.2E-07 48.6 2.8 24 174-197 1-24 (137)
416 PRK14531 adenylate kinase; Pro 95.5 0.046 9.9E-07 47.2 7.0 25 173-197 3-27 (183)
417 cd01672 TMPK Thymidine monopho 95.5 0.042 9.1E-07 47.9 6.9 25 174-198 2-26 (200)
418 PRK05986 cob(I)alamin adenolsy 95.5 0.077 1.7E-06 45.7 8.1 119 172-291 22-160 (191)
419 PF00158 Sigma54_activat: Sigm 95.5 0.06 1.3E-06 45.7 7.5 44 154-197 2-47 (168)
420 CHL00060 atpB ATP synthase CF1 95.5 0.066 1.4E-06 52.9 8.7 90 172-262 161-273 (494)
421 COG1763 MobB Molybdopterin-gua 95.5 0.015 3.2E-07 48.7 3.6 29 172-200 2-30 (161)
422 PRK10875 recD exonuclease V su 95.5 0.042 9E-07 56.5 7.6 52 172-223 167-219 (615)
423 COG1936 Predicted nucleotide k 95.5 0.011 2.4E-07 49.4 2.8 20 174-193 2-21 (180)
424 TIGR03496 FliI_clade1 flagella 95.5 0.055 1.2E-06 52.7 8.1 86 172-261 137-237 (411)
425 PRK05922 type III secretion sy 95.5 0.098 2.1E-06 51.1 9.7 87 172-262 157-258 (434)
426 COG0003 ArsA Predicted ATPase 95.5 0.031 6.7E-07 52.5 6.1 48 172-221 2-49 (322)
427 PF03193 DUF258: Protein of un 95.5 0.023 5E-07 47.6 4.7 34 160-196 26-59 (161)
428 TIGR01420 pilT_fam pilus retra 95.5 0.029 6.4E-07 53.7 6.1 111 171-291 121-232 (343)
429 PRK14530 adenylate kinase; Pro 95.5 0.013 2.8E-07 52.1 3.5 25 173-197 4-28 (215)
430 PRK10416 signal recognition pa 95.5 0.11 2.3E-06 49.1 9.7 28 171-198 113-140 (318)
431 PRK09099 type III secretion sy 95.5 0.057 1.2E-06 53.0 8.1 89 171-262 162-264 (441)
432 KOG0726 26S proteasome regulat 95.5 0.12 2.5E-06 47.0 9.3 95 146-261 180-288 (440)
433 PRK06793 fliI flagellum-specif 95.5 0.063 1.4E-06 52.5 8.3 90 171-263 155-258 (432)
434 cd01132 F1_ATPase_alpha F1 ATP 95.5 0.081 1.7E-06 48.3 8.5 94 173-270 70-181 (274)
435 TIGR02868 CydC thiol reductant 95.5 0.072 1.6E-06 54.4 9.2 27 171-197 360-386 (529)
436 TIGR00041 DTMP_kinase thymidyl 95.4 0.047 1E-06 47.6 6.8 26 173-198 4-29 (195)
437 COG1126 GlnQ ABC-type polar am 95.4 0.013 2.9E-07 50.8 3.1 26 172-197 28-53 (240)
438 KOG0738 AAA+-type ATPase [Post 95.4 0.041 8.9E-07 51.9 6.5 26 173-198 246-271 (491)
439 TIGR01313 therm_gnt_kin carboh 95.4 0.011 2.4E-07 50.0 2.6 22 175-196 1-22 (163)
440 TIGR02655 circ_KaiC circadian 95.4 0.11 2.4E-06 52.3 10.2 86 171-260 20-129 (484)
441 PRK13949 shikimate kinase; Pro 95.4 0.013 2.9E-07 49.9 3.1 24 174-197 3-26 (169)
442 COG3854 SpoIIIAA ncharacterize 95.4 0.063 1.4E-06 47.1 7.2 119 163-291 128-255 (308)
443 PRK10078 ribose 1,5-bisphospho 95.4 0.013 2.7E-07 50.9 3.1 24 173-196 3-26 (186)
444 PRK00279 adk adenylate kinase; 95.4 0.079 1.7E-06 47.0 8.3 24 174-197 2-25 (215)
445 TIGR00176 mobB molybdopterin-g 95.4 0.015 3.2E-07 48.7 3.3 33 174-207 1-33 (155)
446 PRK13947 shikimate kinase; Pro 95.4 0.014 3E-07 49.8 3.2 25 174-198 3-27 (171)
447 PRK06851 hypothetical protein; 95.4 0.23 4.9E-06 47.6 11.6 43 170-213 212-254 (367)
448 PRK05022 anaerobic nitric oxid 95.4 0.044 9.6E-07 55.5 7.3 48 150-197 186-235 (509)
449 cd01878 HflX HflX subfamily. 95.4 0.061 1.3E-06 47.2 7.4 27 170-196 39-65 (204)
450 COG1643 HrpA HrpA-like helicas 95.4 0.1 2.2E-06 55.3 9.9 129 158-291 53-207 (845)
451 PF01078 Mg_chelatase: Magnesi 95.4 0.03 6.4E-07 48.8 5.1 44 150-195 2-45 (206)
452 PRK14529 adenylate kinase; Pro 95.4 0.069 1.5E-06 47.5 7.6 83 175-262 3-87 (223)
453 KOG1051 Chaperone HSP104 and r 95.4 0.1 2.2E-06 55.2 9.9 101 153-263 564-672 (898)
454 PRK14738 gmk guanylate kinase; 95.4 0.015 3.3E-07 51.3 3.4 25 171-195 12-36 (206)
455 PRK12339 2-phosphoglycerate ki 95.3 0.017 3.7E-07 50.4 3.6 25 172-196 3-27 (197)
456 cd03243 ABC_MutS_homologs The 95.3 0.011 2.4E-07 51.9 2.5 23 173-195 30-52 (202)
457 cd00464 SK Shikimate kinase (S 95.3 0.016 3.4E-07 48.4 3.3 23 175-197 2-24 (154)
458 PRK00698 tmk thymidylate kinas 95.3 0.052 1.1E-06 47.6 6.8 26 173-198 4-29 (205)
459 cd00820 PEPCK_HprK Phosphoenol 95.3 0.016 3.4E-07 44.9 2.9 21 173-193 16-36 (107)
460 cd00984 DnaB_C DnaB helicase C 95.3 0.18 3.9E-06 45.6 10.4 50 173-225 14-63 (242)
461 COG1124 DppF ABC-type dipeptid 95.3 0.015 3.2E-07 51.4 3.1 25 172-196 33-57 (252)
462 PRK05057 aroK shikimate kinase 95.3 0.018 3.9E-07 49.2 3.6 26 172-197 4-29 (172)
463 KOG1970 Checkpoint RAD17-RFC c 95.3 0.27 5.7E-06 48.7 11.7 40 158-197 89-135 (634)
464 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.11 2.5E-06 46.3 8.8 47 172-222 16-62 (224)
465 PRK07594 type III secretion sy 95.2 0.087 1.9E-06 51.5 8.4 88 171-262 154-256 (433)
466 COG1116 TauB ABC-type nitrate/ 95.2 0.016 3.5E-07 51.5 3.1 25 172-196 29-53 (248)
467 PF13521 AAA_28: AAA domain; P 95.2 0.016 3.4E-07 49.0 3.0 21 175-195 2-22 (163)
468 TIGR00382 clpX endopeptidase C 95.2 0.084 1.8E-06 51.4 8.3 46 152-197 78-141 (413)
469 PHA02774 E1; Provisional 95.2 0.051 1.1E-06 54.5 6.8 48 159-210 420-468 (613)
470 PF13604 AAA_30: AAA domain; P 95.2 0.049 1.1E-06 47.6 6.1 31 169-199 15-45 (196)
471 PRK13695 putative NTPase; Prov 95.2 0.03 6.6E-07 47.9 4.7 25 174-198 2-26 (174)
472 PLN02200 adenylate kinase fami 95.1 0.021 4.6E-07 51.4 3.7 27 171-197 42-68 (234)
473 PRK06731 flhF flagellar biosyn 95.1 0.19 4.2E-06 46.1 9.9 90 171-262 74-165 (270)
474 PF03029 ATP_bind_1: Conserved 95.1 0.02 4.4E-07 51.6 3.5 34 177-212 1-34 (238)
475 PRK09302 circadian clock prote 95.1 0.17 3.6E-06 51.4 10.4 85 172-261 273-373 (509)
476 PRK13948 shikimate kinase; Pro 95.1 0.026 5.6E-07 48.6 3.9 28 170-197 8-35 (182)
477 PRK05201 hslU ATP-dependent pr 95.1 0.075 1.6E-06 51.5 7.3 47 152-198 16-76 (443)
478 cd03116 MobB Molybdenum is an 95.1 0.034 7.4E-07 46.7 4.5 27 173-199 2-28 (159)
479 PRK07196 fliI flagellum-specif 95.0 0.077 1.7E-06 51.9 7.5 27 171-197 154-180 (434)
480 TIGR01447 recD exodeoxyribonuc 95.0 0.062 1.3E-06 55.0 7.1 25 173-197 161-185 (586)
481 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.03 6.5E-07 49.2 4.3 24 172-195 29-52 (204)
482 PRK07721 fliI flagellum-specif 95.0 0.12 2.5E-06 51.0 8.7 88 171-261 157-258 (438)
483 PRK05688 fliI flagellum-specif 95.0 0.17 3.7E-06 49.7 9.7 88 171-262 167-269 (451)
484 COG1136 SalX ABC-type antimicr 95.0 0.021 4.5E-07 50.6 3.1 24 173-196 32-55 (226)
485 TIGR03497 FliI_clade2 flagella 95.0 0.081 1.7E-06 51.6 7.5 88 171-262 136-238 (413)
486 TIGR01026 fliI_yscN ATPase Fli 95.0 0.11 2.3E-06 51.2 8.3 86 172-261 163-263 (440)
487 PRK13946 shikimate kinase; Pro 95.0 0.025 5.4E-07 48.9 3.5 26 172-197 10-35 (184)
488 COG2019 AdkA Archaeal adenylat 95.0 0.026 5.6E-07 46.9 3.4 47 172-230 4-50 (189)
489 PF06068 TIP49: TIP49 C-termin 94.9 0.048 1E-06 51.5 5.5 53 150-202 23-80 (398)
490 PRK14493 putative bifunctional 94.9 0.034 7.4E-07 51.2 4.5 28 173-200 2-29 (274)
491 TIGR02788 VirB11 P-type DNA tr 94.9 0.038 8.2E-07 52.0 4.9 26 172-197 144-169 (308)
492 PRK09825 idnK D-gluconate kina 94.9 0.025 5.4E-07 48.5 3.3 25 173-197 4-28 (176)
493 PRK04182 cytidylate kinase; Pr 94.9 0.025 5.5E-07 48.5 3.4 24 174-197 2-25 (180)
494 cd03227 ABC_Class2 ABC-type Cl 94.9 0.17 3.7E-06 42.7 8.3 22 173-194 22-43 (162)
495 PF00005 ABC_tran: ABC transpo 94.8 0.024 5.2E-07 46.2 3.0 25 173-197 12-36 (137)
496 COG1224 TIP49 DNA helicase TIP 94.8 0.15 3.2E-06 47.8 8.2 55 150-204 38-97 (450)
497 KOG0066 eIF2-interacting prote 94.8 0.073 1.6E-06 51.0 6.4 25 173-197 614-638 (807)
498 TIGR02173 cyt_kin_arch cytidyl 94.8 0.027 5.9E-07 47.8 3.4 24 174-197 2-25 (171)
499 PLN02348 phosphoribulokinase 94.8 0.031 6.6E-07 53.6 3.9 28 170-197 47-74 (395)
500 TIGR03574 selen_PSTK L-seryl-t 94.8 0.023 5E-07 51.8 3.1 25 174-198 1-25 (249)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-58 Score=473.24 Aligned_cols=388 Identities=29% Similarity=0.473 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------cc
Q 044858 33 LEKLKNELEKLKIARASVQYKVDDSRIKGDGIQQPVEEWLITVDEAINEVETLIADKEKSN-----------------NR 95 (426)
Q Consensus 33 ~~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~l~~~~yd~ed~ld~~~~~~-----------------~~ 95 (426)
+.+.++.+..|+..+..++.++++++.+++ ....+..|.+.+++++|++||.++.+.... +-
T Consensus 23 ~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~ 101 (889)
T KOG4658|consen 23 LDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRL 101 (889)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHH
Confidence 344455677777777777788888887763 357889999999999999999988653111 11
Q ss_pred cccccC-CChHHHhHHHHHHHHHHHHHHHhhhcCCcceeccc-CCCccccccccCCcccccchHHHHHHHHHHhccCCcc
Q 044858 96 CLKGLC-PNLKTRYQLSKKAEREANAIVGLHEKGRFDSVSFR-TIPEETWLKSTQDFMHFESRKSTLKGILDALSNRNFN 173 (426)
Q Consensus 96 ~~~~~~-~~~~~r~~~~~~i~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~~~~~~l~~~l~~~~~~ 173 (426)
|+...+ ......+.+++++-++...++.+..++.|..+... .+++.....|..+... +|.+..++++.+.|.+.+..
T Consensus 102 c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~ 180 (889)
T KOG4658|consen 102 CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVG 180 (889)
T ss_pred hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCC
Confidence 111111 22333344555555555555555444445544431 1112222333333334 99999999999999987779
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh-hcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCc---HHHHHHHHHHHhc
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK-ENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESE---SVRAWRLLEQLKK 249 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~---~~~~~~l~~~l~~ 249 (426)
+++|+||||+||||||++++|+.. +.++|+.++||+||+.++..+++.+|++.++.......+ ......+.+.|.
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~- 259 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE- 259 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-
Confidence 999999999999999999999988 899999999999999999999999999998874443322 344555666665
Q ss_pred CCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCC--CCCC
Q 044858 250 ETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDC--IENG 327 (426)
Q Consensus 250 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~ 327 (426)
+|||+|||||||+..+|+.+..++|...+||+|++|||++.|+...+++...++++.|+++|||.||++.++.. ...+
T Consensus 260 ~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~ 339 (889)
T KOG4658|consen 260 GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHP 339 (889)
T ss_pred cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccc
Confidence 69999999999999999999999999999999999999999987668888999999999999999999999854 2335
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHhhcC-CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHH
Q 044858 328 ELKSVVTEVVKECAGLPIAIVPIAKALKNK-SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFL 406 (426)
Q Consensus 328 ~~~~~~~~i~~~c~GlPlai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl 406 (426)
.++++|++++++|+|+|||++++|+.|+.+ +..+|+++.+.+.+....+.++.. +.++.+|++||++||++ +|.||+
T Consensus 340 ~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~-~~i~~iLklSyd~L~~~-lK~CFL 417 (889)
T KOG4658|consen 340 DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME-ESILPILKLSYDNLPEE-LKSCFL 417 (889)
T ss_pred cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh-hhhHHhhhccHhhhhHH-HHHHHH
Confidence 589999999999999999999999999987 888999999999887555554444 89999999999999976 999999
Q ss_pred Hhhc---CCccChhhHhhhccC
Q 044858 407 LIGY---SYICNVKDLLYRGMG 425 (426)
Q Consensus 407 ~~s~---~~~i~~~~Li~~Wi~ 425 (426)
|||+ ||+|+++.||.+|||
T Consensus 418 ycalFPED~~I~~e~Li~yWia 439 (889)
T KOG4658|consen 418 YCALFPEDYEIKKEKLIEYWIA 439 (889)
T ss_pred hhccCCcccccchHHHHHHHHh
Confidence 9999 999999999999996
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.9e-45 Score=341.46 Aligned_cols=266 Identities=30% Similarity=0.508 Sum_probs=213.3
Q ss_pred hHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcc-
Q 044858 156 RKSTLKGILDALSN--RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID- 232 (426)
Q Consensus 156 R~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~- 232 (426)
|+.++++|.+.|.+ ++.++|+|+|+||+||||||.+++++...+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999987 788999999999999999999999997777899999999999999999999999999987743
Q ss_pred ---ccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhccCCceeeEEccCCCH
Q 044858 233 ---QESESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSCEMDCQQNFVVDVLND 309 (426)
Q Consensus 233 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~~~~~~~~~~l~~L~~ 309 (426)
..+.......+.+.+. ++++||||||||+...|+.+...++....||+||||||+..++.........|++++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334445566666665 579999999999999998888888777789999999999988743333368999999999
Q ss_pred HHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCchHHHHHHHHHhhcC-CHHHHHHHHHHHhhccccCCCCcchhhhh
Q 044858 310 KEAWSLFKKMTGDCI--ENGELKSVVTEVVKECAGLPIAIVPIAKALKNK-SPYEWRNALRQLKRNFLRSFSGTQAVAAY 386 (426)
Q Consensus 310 ~e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 386 (426)
+++++||.+.++... .++.+.+.+++|+++|+|+||||.++|++|+.+ +..+|+.+++++........ +.. ..+.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~-~~~-~~~~ 237 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR-DYD-RSVF 237 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS-GSC-HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-cccc
Confidence 999999999997443 345556789999999999999999999999644 77899999999877654322 112 8899
Q ss_pred hhHHhhhcCCCCChhHHHHHHhhc---CCccChhhHhhhccC
Q 044858 387 STIQLSYNQLGGEELRKTFLLIGY---SYICNVKDLLYRGMG 425 (426)
Q Consensus 387 ~~l~~sy~~L~~~~lk~cfl~~s~---~~~i~~~~Li~~Wi~ 425 (426)
.++.+||+.||++ +|+||+|||+ ++.|+++.|+++|++
T Consensus 238 ~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 238 SALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred ccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 9999999999998 9999999999 889999999999986
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-33 Score=306.99 Aligned_cols=249 Identities=19% Similarity=0.303 Sum_probs=193.2
Q ss_pred CCcccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe---cCC---------
Q 044858 148 QDFMHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV---SQT--------- 213 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~--------- 213 (426)
.+..+++|++..++++..++. .+++++|+|+||||+||||||+.+|+.... +|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhcccccc
Confidence 355679999999999988875 456889999999999999999999998764 5888777642 111
Q ss_pred --cC-HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchh
Q 044858 214 --PQ-IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQD 290 (426)
Q Consensus 214 --~~-~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~ 290 (426)
++ ...+..+++..+........ .....+.+.+. ++|+||||||||+..+|+.+.......++||+||||||+..
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 12234444444322111100 01133445554 68999999999999999988766655678999999999999
Q ss_pred hhhccCCceeeEEccCCCHHHHHHHHHHhhCCCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHHHHHHHHH
Q 044858 291 VLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCI-ENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEWRNALRQL 369 (426)
Q Consensus 291 va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~l~~l 369 (426)
++. ..+..++|+++.|++++||+||+..++... +++++.+++++|+++|+|+||||+++|++|++++..+|+.+++++
T Consensus 336 vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 336 FLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 874 344567999999999999999999998543 445678999999999999999999999999999999999999998
Q ss_pred hhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHHHhhc
Q 044858 370 KRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFLLIGY 410 (426)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~ 410 (426)
.... + ..+..+|++||+.|+++..|.||+++|+
T Consensus 415 ~~~~-------~-~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ 447 (1153)
T PLN03210 415 RNGL-------D-GKIEKTLRVSYDGLNNKKDKAIFRHIAC 447 (1153)
T ss_pred HhCc-------c-HHHHHHHHHhhhccCccchhhhhheehh
Confidence 7522 2 6789999999999987448999999998
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.53 E-value=5.3e-12 Score=116.86 Aligned_cols=183 Identities=15% Similarity=0.189 Sum_probs=119.2
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHH---
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLE--- 245 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~--- 245 (426)
....+.+.|+|++|+|||||++.+++...... + ...|+ +....+..+++..|+..++.+............+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998865321 1 12233 334457788999999998876544333333333332
Q ss_pred -HHhcCCeEEEEEeCCCCcc--ChhhhcC---CCCCCCCCeEEEEeecchhhhh--------ccCCceeeEEccCCCHHH
Q 044858 246 -QLKKETKILIILDDIWGSL--DLEAIGI---PLADDNGGCKVLLTARSQDVLS--------CEMDCQQNFVVDVLNDKE 311 (426)
Q Consensus 246 -~l~~~k~~LlVlDdv~~~~--~~~~l~~---~l~~~~~~s~iivTtr~~~va~--------~~~~~~~~~~l~~L~~~e 311 (426)
....++++++|+||++... .++.+.. ..........|++|........ ........+++++|+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2335788999999998753 3444321 1112223345667665432110 011124578999999999
Q ss_pred HHHHHHHhhCCCC---CCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 312 AWSLFKKMTGDCI---ENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 312 ~~~Lf~~~~~~~~---~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
..+++...+.... ...-..+..+.|++.|+|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988774211 122335789999999999999999998877
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.3e-11 Score=120.82 Aligned_cols=242 Identities=17% Similarity=0.107 Sum_probs=148.5
Q ss_pred CcccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.+..|.||++++++|...+. +..+..+.|+|++|+|||++++.+++........-..+++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 44568999999999988874 33456788999999999999999999876543233466777777778889999999
Q ss_pred HHhCC-Ccc--ccCcHHHHHHHHHHHhc-CCeEEEEEeCCCCcc------ChhhhcCCCCCCCC--CeEEEEeecchhhh
Q 044858 225 EKLGL-KID--QESESVRAWRLLEQLKK-ETKILIILDDIWGSL------DLEAIGIPLADDNG--GCKVLLTARSQDVL 292 (426)
Q Consensus 225 ~~l~~-~~~--~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~--~s~iivTtr~~~va 292 (426)
.++.. ..+ ..+.......+.+.+.. +++.+||||+++... .+..+...+ .... +..+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchh
Confidence 99865 222 12233445566666643 567899999998643 122222211 1112 23366666654332
Q ss_pred hc------cCCceeeEEccCCCHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHHHcCCchHHHHHHHHHh--h---c
Q 044858 293 SC------EMDCQQNFVVDVLNDKEAWSLFKKMTGD-----CIENGELKSVVTEVVKECAGLPIAIVPIAKAL--K---N 356 (426)
Q Consensus 293 ~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-----~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l--~---~ 356 (426)
.. ..-....+.+.+++.++..+++...+.. ...+..++.+++......|..+.|+..+-... + +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 10 0111357899999999999999988632 11222223333333333466777777764332 1 1
Q ss_pred C---CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHHHh
Q 044858 357 K---SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFLLI 408 (426)
Q Consensus 357 ~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~ 408 (426)
. +......+.+... .....-.+..||.+ +.+|++.
T Consensus 267 ~~~I~~~~v~~a~~~~~---------------~~~~~~~~~~L~~~--~k~~L~a 304 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE---------------IVHLSEVLRTLPLH--EKLLLRA 304 (394)
T ss_pred CCCcCHHHHHHHHHHHH---------------HHHHHHHHhcCCHH--HHHHHHH
Confidence 1 5666666666541 12234457788876 4444443
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.45 E-value=6.5e-13 Score=120.05 Aligned_cols=195 Identities=23% Similarity=0.297 Sum_probs=105.9
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH---------
Q 044858 153 FESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI--------- 223 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i--------- 223 (426)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+...... + ..+|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 789999999999998877678999999999999999999999874321 2 233444333322 2212221
Q ss_pred -HHHhCCCc-----------cccCcHHHHHHHHHHHhc-CCeEEEEEeCCCCcc-Ch---hh----hcCCCC--CCCCCe
Q 044858 224 -AEKLGLKI-----------DQESESVRAWRLLEQLKK-ETKILIILDDIWGSL-DL---EA----IGIPLA--DDNGGC 280 (426)
Q Consensus 224 -~~~l~~~~-----------~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~---~~----l~~~l~--~~~~~s 280 (426)
...+.... ...........+.+.+.+ +++++|||||+.... .. .. +...+. ......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 11121110 011223445566666653 345999999997655 11 11 111111 123344
Q ss_pred EEEEeecchhhhhc-------cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 281 KVLLTARSQDVLSC-------EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 281 ~iivTtr~~~va~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
.+|+++........ ..+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..+
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 45555554433211 22334559999999999999999976433111123456799999999999988653
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=5.1e-12 Score=136.82 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=151.4
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec-CCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~il~~i~~~ 226 (426)
.....++.|...++.+-. ....+++.|+|++|.||||++.++.+. ++.++|+++. .+.++..++..++..
T Consensus 11 ~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 344567778766665533 245689999999999999999998853 2258899996 445667777777776
Q ss_pred hCCCccc--------------cCcHHHHHHHHHHHhc-CCeEEEEEeCCCCccC--hh-hhcCCCCCCCCCeEEEEeecc
Q 044858 227 LGLKIDQ--------------ESESVRAWRLLEQLKK-ETKILIILDDIWGSLD--LE-AIGIPLADDNGGCKVLLTARS 288 (426)
Q Consensus 227 l~~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~--~~-~l~~~l~~~~~~s~iivTtr~ 288 (426)
++...+. .+.......+...+.. +.+++|||||++..++ .. .+...+.....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 6421111 1112233445555543 6799999999976532 22 222222233456789899998
Q ss_pred hhhhhc-c-CCceeeEEcc----CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHH
Q 044858 289 QDVLSC-E-MDCQQNFVVD----VLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEW 362 (426)
Q Consensus 289 ~~va~~-~-~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w 362 (426)
...... . .-......+. +|+.+|+.+||....+.... .+....|.+.|+|.|+++..++..+...+.. .
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~ 236 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-L 236 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-h
Confidence 532110 0 0012234455 99999999999887664332 3457889999999999999988777643210 0
Q ss_pred HHHHHHHhhccccCCCCcchhhhhhhHH-hhhcCCCCChhHHHHHHhhc-CCccC
Q 044858 363 RNALRQLKRNFLRSFSGTQAVAAYSTIQ-LSYNQLGGEELRKTFLLIGY-SYICN 415 (426)
Q Consensus 363 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~lk~cfl~~s~-~~~i~ 415 (426)
......+. .. +...+...+. -.|+.||++ .+..++..|+ + .|+
T Consensus 237 ~~~~~~~~----~~----~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~ 281 (903)
T PRK04841 237 HDSARRLA----GI----NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-SMN 281 (903)
T ss_pred hhhhHhhc----CC----CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-cCC
Confidence 11111110 00 0023444433 348899998 9999999999 4 444
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=2.4e-10 Score=110.73 Aligned_cols=244 Identities=15% Similarity=0.172 Sum_probs=146.3
Q ss_pred cccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhc-Ccc---ceEEEEEecCCcCHHHHHH
Q 044858 150 FMHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLF---EKVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~v~~~~~~~~il~ 221 (426)
+..+.||++++++|...+. +...+.+.|+|++|+|||++++.+++..... ... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 4468999999999999886 3445679999999999999999999876431 111 2456777777778889999
Q ss_pred HHHHHh---CCCccc--cCcHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-C----hhhhcCCC-CCCC--CCeEEEEeec
Q 044858 222 EIAEKL---GLKIDQ--ESESVRAWRLLEQLK-KETKILIILDDIWGSL-D----LEAIGIPL-ADDN--GGCKVLLTAR 287 (426)
Q Consensus 222 ~i~~~l---~~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~~s~iivTtr 287 (426)
.|+.++ +...+. .+.......+.+.+. .+++++||||+++... . +..+.... .... ....+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999988 333222 122334455666654 3568999999998662 1 11221110 1111 2334555554
Q ss_pred chhhh----hccC-C-ceeeEEccCCCHHHHHHHHHHhhCC----CCCCCchHHHHHHHHHHcCCchHHHHHHHHH-h--
Q 044858 288 SQDVL----SCEM-D-CQQNFVVDVLNDKEAWSLFKKMTGD----CIENGELKSVVTEVVKECAGLPIAIVPIAKA-L-- 354 (426)
Q Consensus 288 ~~~va----~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~-l-- 354 (426)
..... .... . ....+.++|++.++..+++..++.. ...+++..+....++..+.|.|..+..+... .
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 43221 1000 1 1256899999999999999988741 1122333344556777777888554333221 1
Q ss_pred h---c---CCHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHHHhh
Q 044858 355 K---N---KSPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFLLIG 409 (426)
Q Consensus 355 ~---~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s 409 (426)
. + -+.+..+.+.+.+. .....-++..||.+ .|..+..+.
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~---------------~~~~~~~i~~l~~~-~~~~l~ai~ 298 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE---------------KDRLLELIRGLPTH-SKLVLLAIA 298 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH---------------HHHHHHHHHcCCHH-HHHHHHHHH
Confidence 1 1 15566665555432 12234466788876 554444443
No 9
>PF05729 NACHT: NACHT domain
Probab=99.36 E-value=7.2e-12 Score=106.92 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=92.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceEEEEEecCCcCHH---HHHHHHHHHhCCCccccCcHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIK---EIQREIAEKLGLKIDQESESVRAWRLLE 245 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~---~il~~i~~~l~~~~~~~~~~~~~~~l~~ 245 (426)
+++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...|..+.......... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 57899999999999999999988776543 3456677665544322 3444444333222111111 2233
Q ss_pred HHhcCCeEEEEEeCCCCccC---------hhhhc-CCCCC-CCCCeEEEEeecchhhh--hccCCceeeEEccCCCHHHH
Q 044858 246 QLKKETKILIILDDIWGSLD---------LEAIG-IPLAD-DNGGCKVLLTARSQDVL--SCEMDCQQNFVVDVLNDKEA 312 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~~s~iivTtr~~~va--~~~~~~~~~~~l~~L~~~e~ 312 (426)
.+...++++||||++++... +..+. ..+.. ..+++++|||+|..... .........+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34457899999999976532 22221 22222 24589999999997762 22334446899999999999
Q ss_pred HHHHHHhhC
Q 044858 313 WSLFKKMTG 321 (426)
Q Consensus 313 ~~Lf~~~~~ 321 (426)
.+++.+.+.
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999988763
No 10
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.17 E-value=2.5e-09 Score=104.83 Aligned_cols=194 Identities=14% Similarity=0.150 Sum_probs=116.5
Q ss_pred CcccccchHHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKG---ILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 149 ~~~~~~gR~~~~~~---l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
....|+|+++.+.. +...+..+..+.+.++|++|+||||||+.+++..... |+.++......+-+++++.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHHHHH
Confidence 45678888887665 7777777777788999999999999999998876432 2333222111111222221
Q ss_pred HhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEE--eecchhhh--hccCCce
Q 044858 226 KLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLL--TARSQDVL--SCEMDCQ 299 (426)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iiv--Ttr~~~va--~~~~~~~ 299 (426)
. .......+++.+|+||+++... ..+.+...+. .+..+++ ||.+.... .......
T Consensus 83 ~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 83 E----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred H----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccc
Confidence 1 1111223578999999998653 3333333322 2444444 33433211 1122334
Q ss_pred eeEEccCCCHHHHHHHHHHhhCCCC-CC-CchHHHHHHHHHHcCCchHHHHHHHHHhh---c-CCHHHHHHHHHH
Q 044858 300 QNFVVDVLNDKEAWSLFKKMTGDCI-EN-GELKSVVTEVVKECAGLPIAIVPIAKALK---N-KSPYEWRNALRQ 368 (426)
Q Consensus 300 ~~~~l~~L~~~e~~~Lf~~~~~~~~-~~-~~~~~~~~~i~~~c~GlPlai~~~~~~l~---~-~~~~~w~~~l~~ 368 (426)
..+.+.+++.++...++.+.+.... .. +-..+..+.|++.|+|.|..+..+..... . .+.+..+.++..
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~ 218 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQK 218 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhh
Confidence 7899999999999999998764211 11 22356788899999999987766554442 1 155555555544
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=1.2e-09 Score=103.08 Aligned_cols=189 Identities=13% Similarity=0.090 Sum_probs=108.5
Q ss_pred cccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 150 FMHFESRKSTLKGILDALS-----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
+..|+|+++.++.|..++. ...+..+.++|++|+|||+||+.+.+..... + ..+..+......+ +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 4579999999999888776 2345678899999999999999999876532 2 1222221112222 22222
Q ss_pred HHhCCCc-------cccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhc-cC
Q 044858 225 EKLGLKI-------DQESESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSC-EM 296 (426)
Q Consensus 225 ~~l~~~~-------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~-~~ 296 (426)
..++... +..+ ......++..+. +.+..+|+++..+...+.. .++ +.+-|..||+...+... ..
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHh-hhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHh
Confidence 3322111 0000 011122222222 3345555665544433321 111 24555666776544321 11
Q ss_pred CceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 297 DCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 297 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
.....+.+++++.++..+++.+.+..... .-..+....|++.|+|.|..+..++..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 22357899999999999999988753221 222456788999999999877655543
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.14 E-value=9.1e-10 Score=102.24 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=110.9
Q ss_pred CCcccccchHHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLK---GILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 148 ~~~~~~~gR~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.....++|.++.+. -|...+..+++....+||++|+||||||+.+....... |..++...+-..-+++++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDLREII 93 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHHHHHH
Confidence 34556666665542 24445556778888899999999999999999876543 344444433333333333
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-hhhhcCCCCCCCCCeEEEE--eecchhhh--hccCCce
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-LEAIGIPLADDNGGCKVLL--TARSQDVL--SCEMDCQ 299 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~~s~iiv--Ttr~~~va--~~~~~~~ 299 (426)
+. ..+....+++.+|++|+|+.... -++. .||.-.+|.-|+| ||.++.-. +...+..
T Consensus 94 e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~--lLp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 94 EE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDA--LLPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred HH----------------HHHHHhcCCceEEEEehhhhcChhhhhh--hhhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 21 22233347899999999985532 1222 2344556777776 55555322 2234556
Q ss_pred eeEEccCCCHHHHHHHHHHhhCC-C-----CCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 300 QNFVVDVLNDKEAWSLFKKMTGD-C-----IENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 300 ~~~~l~~L~~~e~~~Lf~~~~~~-~-----~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
.++.+++|+.++..+++.+.+.. . ....--++...-+++.++|---+.-..
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 89999999999999999985421 1 111122457788999999976544333
No 13
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=2e-09 Score=108.61 Aligned_cols=242 Identities=17% Similarity=0.154 Sum_probs=153.9
Q ss_pred ccCCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHH
Q 044858 146 STQDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIA 224 (426)
Q Consensus 146 ~~~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~ 224 (426)
+|..+...+-|....+.+-. ....+.+.|..|+|.|||||+.+....... -..+.|.+.+. +.++..+...++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHH
Confidence 33445566777765555433 346789999999999999999999873322 34688999864 557888888888
Q ss_pred HHhCCCccccCc--------------HHHHHHHHHHHhc-CCeEEEEEeCCCCc---cChhhhcCCCCCCCCCeEEEEee
Q 044858 225 EKLGLKIDQESE--------------SVRAWRLLEQLKK-ETKILIILDDIWGS---LDLEAIGIPLADDNGGCKVLLTA 286 (426)
Q Consensus 225 ~~l~~~~~~~~~--------------~~~~~~l~~~l~~-~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~~s~iivTt 286 (426)
..++.-.+...+ ......++..+.. .+++.+||||-.-. .--..+.-.+.....+-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 887643332221 1233445544432 56899999997633 22222322233344588999999
Q ss_pred cchhhhhc--cCCceeeEEcc----CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcC-CH
Q 044858 287 RSQDVLSC--EMDCQQNFVVD----VLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNK-SP 359 (426)
Q Consensus 287 r~~~va~~--~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~-~~ 359 (426)
|+..-... ..-....+++. .|+.+|+.++|....+...+ +.-.+.+....+|-+-|+..++=.+++. +.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 99753210 00112234444 48999999999987654333 3447789999999999999999888833 33
Q ss_pred HHHHHHHHHHhhccccCCCCcchhhhhh-hHHhhhcCCCCChhHHHHHHhhc
Q 044858 360 YEWRNALRQLKRNFLRSFSGTQAVAAYS-TIQLSYNQLGGEELRKTFLLIGY 410 (426)
Q Consensus 360 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~lk~cfl~~s~ 410 (426)
+.--..+.-.. +.+.. ...--++.||++ +|..++-||+
T Consensus 244 ~q~~~~LsG~~------------~~l~dYL~eeVld~Lp~~-l~~FLl~~sv 282 (894)
T COG2909 244 EQSLRGLSGAA------------SHLSDYLVEEVLDRLPPE-LRDFLLQTSV 282 (894)
T ss_pred HHHhhhccchH------------HHHHHHHHHHHHhcCCHH-HHHHHHHHHh
Confidence 33222221100 11111 233457889998 9999999998
No 14
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.14 E-value=1.1e-09 Score=115.63 Aligned_cols=262 Identities=17% Similarity=0.180 Sum_probs=158.3
Q ss_pred cccchHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEEEEecCCc---CHHHHHHHHH
Q 044858 152 HFESRKSTLKGILDALS---NRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQTP---QIKEIQREIA 224 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~---~~~~il~~i~ 224 (426)
.++||+.+++.|...+. .+...++.+.|..|+|||+|+++|......+ +.|-.-.+-...... ...+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999999887 4556799999999999999999999887654 222111111111221 1223333333
Q ss_pred HHh-------------------CCCccc-----------------------cCcHH-----HHHHHHHHHhcCCeEEEEE
Q 044858 225 EKL-------------------GLKIDQ-----------------------ESESV-----RAWRLLEQLKKETKILIIL 257 (426)
Q Consensus 225 ~~l-------------------~~~~~~-----------------------~~~~~-----~~~~l~~~l~~~k~~LlVl 257 (426)
.++ +..... ..... ....+.....+.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 111000 00000 1112222334567999999
Q ss_pred eCCCC--ccChhhh---cCCCCC-C--CCCeEEEEeecch-hhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCc
Q 044858 258 DDIWG--SLDLEAI---GIPLAD-D--NGGCKVLLTARSQ-DVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGE 328 (426)
Q Consensus 258 Ddv~~--~~~~~~l---~~~l~~-~--~~~s~iivTtr~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 328 (426)
||++- ...++-+ ...... . .+..-.+.|.+.. ........+...|.|.||+..+...+....++.....
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 99942 2222211 111110 0 0111122333332 1112234456899999999999999999998753322
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHhhcC-------CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChh
Q 044858 329 LKSVVTEVVKECAGLPIAIVPIAKALKNK-------SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEEL 401 (426)
Q Consensus 329 ~~~~~~~i~~~c~GlPlai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l 401 (426)
..+..+.|+++..|+|+.+..+-..+... +...|..-..++.. .+. . +.+.+.+..-.+.||+. .
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~-~-~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LAT-T-DAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chh-h-HHHHHHHHHHHhcCCHH-H
Confidence 24568899999999999999999988742 33444333333221 111 1 33666799999999998 9
Q ss_pred HHHHHHhhc-CCccChhhHhhhc
Q 044858 402 RKTFLLIGY-SYICNVKDLLYRG 423 (426)
Q Consensus 402 k~cfl~~s~-~~~i~~~~Li~~W 423 (426)
|..+-..|+ |..|+.+.|-..|
T Consensus 311 ~~Vl~~AA~iG~~F~l~~La~l~ 333 (849)
T COG3899 311 REVLKAAACIGNRFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHhCccCCHHHHHHHH
Confidence 999999999 9888888776554
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=4.4e-09 Score=100.01 Aligned_cols=192 Identities=13% Similarity=0.066 Sum_probs=105.4
Q ss_pred CCcccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALS-----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
..+..|+|+++.++.+...+. ...++.+.|+|++|+|||+||+.+.+..... + .++..+. ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 356789999999988877664 2345678899999999999999999987532 1 1222211 111122223
Q ss_pred HHHHhCCCc----cccC--cHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhc-c
Q 044858 223 IAEKLGLKI----DQES--ESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSC-E 295 (426)
Q Consensus 223 i~~~l~~~~----~~~~--~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~-~ 295 (426)
++..+.... ++.. .......++..+ .+.+..+++|+..+...+. ..+ .+.+-|..||+...+... .
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~---~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIR---LDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCcccccee---ecC---CCceEEeecCCcccCCHHHH
Confidence 333222110 0000 000111111222 1233444444433222111 011 123445566665443221 1
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
......++++++++++..+++.+.+..... .--.+....|++.|+|.|-.+..+...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 112357899999999999999988763221 122457889999999999766665553
No 16
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=1.9e-08 Score=101.76 Aligned_cols=183 Identities=14% Similarity=0.175 Sum_probs=116.1
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------ccceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENN-------------------LFEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 207 (426)
..+..++|.+..++.|.+++..+++ +.+.++|+.|+||||+|+.+.+...... .|..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 3567789999999999999887664 4567999999999999999887654211 1111222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeE
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQL----KKETKILIILDDIWGSL--DLEAIGIPLADDNGGCK 281 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 281 (426)
++.+....+. .+..+++.. ..++.-++|||+++... .++.+...+..-..+++
T Consensus 93 IDAas~rgVD---------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 93 MDAASNRGVD---------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred ecccccccHH---------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 2222211111 122222222 12455689999998663 36665544433344677
Q ss_pred EEEeecchh-hhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch-HHHHHHHH
Q 044858 282 VLLTARSQD-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP-IAIVPIAK 352 (426)
Q Consensus 282 iivTtr~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~ 352 (426)
+|+||.+.. +.....+....+++++++.++..+.+.+.+...... -..+....|++.++|.. -++..+-.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 777776643 322233445789999999999999999887533211 12456788999999865 45555443
No 17
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.98 E-value=1.9e-08 Score=96.35 Aligned_cols=202 Identities=13% Similarity=0.099 Sum_probs=113.4
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc-eEEEEEecCCcC-HHHHHH---HH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQ-IKEIQR---EI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~il~---~i 223 (426)
....++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+..... .+. ..+.++++...+ ....+. ..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcch
Confidence 456788999999999998887776778899999999999999998876432 222 233444332110 000000 00
Q ss_pred HHHhCCC-ccccCcHHHHHHHHHHHhc-----CCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecchh-hhhc
Q 044858 224 AEKLGLK-IDQESESVRAWRLLEQLKK-----ETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQD-VLSC 294 (426)
Q Consensus 224 ~~~l~~~-~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~-va~~ 294 (426)
...++.. ............+.+.... +.+-+||+||+.... ....+...+......+++|+||.... +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 0000000 0001111222233222211 234589999997552 22223322222234567887775432 2111
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAK 352 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 352 (426)
.......+.+.+++.++...++.+.+...... --.+....+++.++|.+-.+.....
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22334678999999999999998876422211 2245678888999887766554443
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.97 E-value=1e-07 Score=97.26 Aligned_cols=255 Identities=20% Similarity=0.170 Sum_probs=143.4
Q ss_pred cccccchHHHHHHHHHHhc----cCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhc---Cccc--eEEEEEecCCcCHHHH
Q 044858 150 FMHFESRKSTLKGILDALS----NRN-FNMIGVYGMGGIGKTTLVKEVGRQAKEN---NLFE--KVISSRVSQTPQIKEI 219 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~----~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~--~~~wv~v~~~~~~~~i 219 (426)
+..+.+|++|+++|...|. ... ..++.|+|++|+|||++++.|.+..... .... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3457899999999988876 223 3467899999999999999998776421 1122 3567777666788889
Q ss_pred HHHHHHHhCCCccc--cCcHHHHHHHHHHHhc--CCeEEEEEeCCCCccC-hhh-hcCCCC-CCCCCeEEEE--eecchh
Q 044858 220 QREIAEKLGLKIDQ--ESESVRAWRLLEQLKK--ETKILIILDDIWGSLD-LEA-IGIPLA-DDNGGCKVLL--TARSQD 290 (426)
Q Consensus 220 l~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~-~~~-l~~~l~-~~~~~s~iiv--Ttr~~~ 290 (426)
...|.+++....+. .+....+..++..+.. +...+||||+++.... -+. |...+. ....+++|+| +|....
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 99999888433322 2233455566665532 2346999999975431 111 111111 1123455444 332211
Q ss_pred hh----hccC--CceeeEEccCCCHHHHHHHHHHhhCCC---CCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcC----
Q 044858 291 VL----SCEM--DCQQNFVVDVLNDKEAWSLFKKMTGDC---IENGELKSVVTEVVKECAGLPIAIVPIAKALKNK---- 357 (426)
Q Consensus 291 va----~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~---- 357 (426)
.. .... -....+...|++.++-.+++..++... ..+..++-+++.++...|-.-.||.++-.+....
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegsk 993 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQK 993 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCc
Confidence 11 1000 112347789999999999999988632 2222333334444444455566666655444311
Q ss_pred -CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHHHhhc------C-CccChhhHhh
Q 044858 358 -SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFLLIGY------S-YICNVKDLLY 421 (426)
Q Consensus 358 -~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~------~-~~i~~~~Li~ 421 (426)
+.+.-..+...+. ...+.-....||.| ..+||+..+ + ..++...+..
T Consensus 994 VT~eHVrkAleeiE---------------~srI~e~IktLPlH--qKLVLlALIlLlk~tg~~~i~TGEVYe 1048 (1164)
T PTZ00112 994 IVPRDITEATNQLF---------------DSPLTNAINYLPWP--FKMFLTCLIVELRMLNDFIIPYKKVLN 1048 (1164)
T ss_pred cCHHHHHHHHHHHH---------------hhhHHHHHHcCCHH--HHHHHHHHHHHHhhcCCCceeHHHHHH
Confidence 3334444433321 11233455689987 555666433 1 2466555543
No 19
>PRK06893 DNA replication initiation factor; Validated
Probab=98.97 E-value=1.1e-08 Score=92.04 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=93.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
..+.+.|+|++|+|||+|++.+++....+ ...+.|+++.... ... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc--
Confidence 34678999999999999999999987544 2345666653110 000 01222222
Q ss_pred CeEEEEEeCCCCc---cChhh-hcCCCCCC-CCCeEEEEeecch----------hhhhccCCceeeEEccCCCHHHHHHH
Q 044858 251 TKILIILDDIWGS---LDLEA-IGIPLADD-NGGCKVLLTARSQ----------DVLSCEMDCQQNFVVDVLNDKEAWSL 315 (426)
Q Consensus 251 k~~LlVlDdv~~~---~~~~~-l~~~l~~~-~~~s~iivTtr~~----------~va~~~~~~~~~~~l~~L~~~e~~~L 315 (426)
+.-+|+|||+|.. ..|+. +...+... ..|..+||+|.+. .+.+ .......++++++++++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 2359999999864 34543 22222111 2355565554443 2212 123346889999999999999
Q ss_pred HHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 316 FKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 316 f~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
+++.+....- .--+++..-|++.+.|..-.+..+-..|
T Consensus 170 L~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 170 LQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9988853221 1224677889999988776665554433
No 20
>PF13173 AAA_14: AAA domain
Probab=98.94 E-value=4.5e-09 Score=85.52 Aligned_cols=121 Identities=24% Similarity=0.220 Sum_probs=81.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
.+++.|.|+.|+|||||+++++++.. ....+++++............+ ....+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cC
Confidence 36899999999999999999998765 2345667766543321110000 1112222222 35
Q ss_pred eEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhh-----ccCCceeeEEccCCCHHHH
Q 044858 252 KILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLS-----CEMDCQQNFVVDVLNDKEA 312 (426)
Q Consensus 252 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~-----~~~~~~~~~~l~~L~~~e~ 312 (426)
+.+|+||++....+|......+.+..+..+|++|+.+..... ...+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999999888887666655556789999999876542 2334556889999997763
No 21
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.4e-07 Score=90.92 Aligned_cols=196 Identities=15% Similarity=0.187 Sum_probs=111.7
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.....++|.+..++.+...+..++. +.+.++|+.|+||||+|+.+.+......... ..+........++...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcC
Confidence 3556788999999998888876654 4678999999999999999988764211110 0000000011111110
Q ss_pred hCCCc---c--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecch-hhhhc
Q 044858 227 LGLKI---D--QESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQ-DVLSC 294 (426)
Q Consensus 227 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~-~va~~ 294 (426)
..... + ..........+.+.+. .+++-++|+|+++... .++.+...+......+++|++|.+. .+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 0 0011122223333221 2345699999998653 3555544443334466777766543 33222
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
..+....+++.+++.++..+.+.+.+..... .--.+.+..|++.++|.|-.+....
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2333578999999999999998887643221 1123567789999999886444433
No 22
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.90 E-value=5.9e-09 Score=85.19 Aligned_cols=115 Identities=24% Similarity=0.345 Sum_probs=80.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc---CccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-cCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN---NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-ESESVRAWRLLEQL 247 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-~~~~~~~~~l~~~l 247 (426)
.+.+.|+|++|+|||++++.+.+..... ..-..++|+.++...+...+...|+.+++.+... .+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999876431 0123467999988889999999999999987766 44555667777778
Q ss_pred hcCCeEEEEEeCCCCc-c--ChhhhcCCCCCCCCCeEEEEeecc
Q 044858 248 KKETKILIILDDIWGS-L--DLEAIGIPLADDNGGCKVLLTARS 288 (426)
Q Consensus 248 ~~~k~~LlVlDdv~~~-~--~~~~l~~~l~~~~~~s~iivTtr~ 288 (426)
.+.+..+|||||++.. . .++.+.... +..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEECh
Confidence 7766789999999765 2 222332222 2567788888776
No 23
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.88 E-value=8.4e-08 Score=91.10 Aligned_cols=186 Identities=10% Similarity=0.102 Sum_probs=109.9
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccce-EEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-VISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~il~~i~~~l 227 (426)
....++|+++.++.+..++..+..+.+.++|++|+||||+++.+.+...... +.. .+-++.+...... ...+.+..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchH-HHHHHHHHH
Confidence 4566889999999999998877777789999999999999999998764322 221 1122222222211 111221111
Q ss_pred CCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecchh-hhhccCCceeeEEc
Q 044858 228 GLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQD-VLSCEMDCQQNFVV 304 (426)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~-va~~~~~~~~~~~l 304 (426)
....+ .....+-++++|+++... ....+...+......+.+|+++.... ...........+++
T Consensus 93 ~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 93 ARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 10000 001235689999987542 23333333322334567777764322 11111123457899
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
.++++++....+.+.+...... --.+....+++.++|.+.-+....
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999998877532211 124567889999999887654443
No 24
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=3.8e-08 Score=101.58 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=113.4
Q ss_pred CCcccccchHHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHHHhhhcCc-------------------cceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNM-IGVYGMGGIGKTTLVKEVGRQAKENNL-------------------FEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 207 (426)
..+..++|.+..+..|.+++..++..- +.++|+.|+||||+|+.+++....... |..+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 356778999999999988888776654 589999999999999999987643211 111122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT 285 (426)
+..+....+.+ +++|...+ ...-..+++-++|||+++.. ...+.|...+-.-...+++|++
T Consensus 93 idAas~~kVDd-IReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 93 VDAASRTKVDD-TRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred eccccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 22211111111 12222211 11111356779999999755 3455544444332345666655
Q ss_pred ecc-hhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 286 ARS-QDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 286 tr~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
|.+ ..+..........|++.+|+.++....+.+.+.... -..-.+....|++.++|.|--+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 443322233457899999999999999988774322 1222456788999999988655444
No 25
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=2.7e-07 Score=87.25 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=113.6
Q ss_pred ccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhh----hcCccceEEEEEe-cCCcCHHHHHHHHH
Q 044858 151 MHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAK----ENNLFEKVISSRV-SQTPQIKEIQREIA 224 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~v-~~~~~~~~il~~i~ 224 (426)
.+++|.+..++.+...+..++. +.+.++|+.|+||||+|+.+++... ...|+|...|... +....+.+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4567888888889988876654 5678999999999999999998642 2346666555442 23333333 22333
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCC--CccChhhhcCCCCCCCCCeEEEEeecchhhh-hccCCceee
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIW--GSLDLEAIGIPLADDNGGCKVLLTARSQDVL-SCEMDCQQN 301 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~s~iivTtr~~~va-~~~~~~~~~ 301 (426)
+.+.... . .+++-++|+|+++ +...++.+...+..-..++.+|++|.+.... ....+....
T Consensus 83 ~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3322110 0 1345567777764 4456777766665555688888888665432 212344579
Q ss_pred EEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 044858 302 FVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIV 348 (426)
Q Consensus 302 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 348 (426)
+++.++++++....+.+.... . -.+.+..++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHH
Confidence 999999999998888765431 1 12346778899999886543
No 26
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.86 E-value=3.3e-08 Score=88.94 Aligned_cols=170 Identities=16% Similarity=0.167 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccC
Q 044858 156 RKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQES 235 (426)
Q Consensus 156 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~ 235 (426)
.+..++.+..++.......+.|+|++|+|||+||+.+++..... ....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 45567777776655566789999999999999999999876533 33455665432211 00
Q ss_pred cHHHHHHHHHHHhcCCeEEEEEeCCCCcc---Chh-hhcCCCCC-CCCCeEEEEeecchhhhh--------ccCCceeeE
Q 044858 236 ESVRAWRLLEQLKKETKILIILDDIWGSL---DLE-AIGIPLAD-DNGGCKVLLTARSQDVLS--------CEMDCQQNF 302 (426)
Q Consensus 236 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~l~~-~~~~s~iivTtr~~~va~--------~~~~~~~~~ 302 (426)
..+...+. +.-+|||||++... .|. .+...+.. ...+.++|+||+...... ........+
T Consensus 82 -----~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 01112222 23489999997653 232 23222211 122347888887543210 011123579
Q ss_pred EccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 303 VVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 303 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
++.++++++...++...+.... -+--.+..+.|.+.++|.|..+..+...
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999999999999987653211 1112455677888888888877666443
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=5.1e-08 Score=97.48 Aligned_cols=200 Identities=14% Similarity=0.141 Sum_probs=113.8
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
..+..++|.+..++.|.+.+..++.. .+.++|+.|+||||+|+.+.+.......-... -+ .+..+......+.|...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~-g~-~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG-GI-TAQPCGQCRACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc-cC-CCCCCcccHHHHHHHcC
Confidence 35667899999999999998877654 56899999999999999998765431000000 00 00000001111111100
Q ss_pred -----hCCCccccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEE-eecchhhhhc
Q 044858 227 -----LGLKIDQESESVRAWRLLEQL----KKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLL-TARSQDVLSC 294 (426)
Q Consensus 227 -----l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iiv-Ttr~~~va~~ 294 (426)
+..+.......+.+..+.+.+ ..++.-++|||+++.. ..++.|...+-.-..++++|+ ||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 000000001112222333332 1356679999999865 345555544433334555555 4444544422
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
..+....+.+++++.++..+.+.+.+....... ..+..+.|++.++|.|.-...+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 334457899999999999999988775322111 2345688999999999755444
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.85 E-value=9e-08 Score=90.65 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=109.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc-eEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.....++|.++.+..|..++..++.+.+.++|++|+||||+|..+.+..... .|. .++-++.+...+.. ..+++++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHHH
Confidence 3556788988888888887777777778899999999999999999876432 122 12222333322222 22222222
Q ss_pred hCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecch-hhhhccCCceeeEE
Q 044858 227 LGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQ-DVLSCEMDCQQNFV 303 (426)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~-~va~~~~~~~~~~~ 303 (426)
+..... .+..++.-+++||+++... ....+...+......+++|+++... .+..........++
T Consensus 88 ~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 88 FAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 110000 0012356799999998653 2222322222223456777766543 22111122346899
Q ss_pred ccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 304 VDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 304 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
++++++++....+...+......- -.+....|++.++|..-.+...
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999988774322111 1346788899999877554433
No 29
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.5e-07 Score=93.44 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=111.6
Q ss_pred CCcccccchHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCcc-----------------------c
Q 044858 148 QDFMHFESRKSTLKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLF-----------------------E 203 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-----------------------~ 203 (426)
..+..++|.+..+..|...+..++ .+.+.++|+.|+||||+|+.+++........ .
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 356678899998888888776655 3578899999999999999998876432110 0
Q ss_pred eEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCC
Q 044858 204 KVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDN 277 (426)
Q Consensus 204 ~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~ 277 (426)
.++.+..+...++ +.+..+.+... .+++-++|+|+++.. ..++.+...+....
T Consensus 98 Dv~eidaas~~~v---------------------d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp 156 (507)
T PRK06645 98 DIIEIDAASKTSV---------------------DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP 156 (507)
T ss_pred cEEEeeccCCCCH---------------------HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC
Confidence 1111111111111 22222222221 246679999999865 34666654444334
Q ss_pred CCeEEEE-eecchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 044858 278 GGCKVLL-TARSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVP 349 (426)
Q Consensus 278 ~~s~iiv-Ttr~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 349 (426)
..+.+|+ ||+...+..........+++.+++.++....+.+.+....... ..+....|++.++|.+.-+..
T Consensus 157 ~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred CCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 4556554 4444444322233446899999999999999998885332221 234567799999998755433
No 30
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.82 E-value=7.1e-08 Score=88.41 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=104.1
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHH
Q 044858 165 DALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLL 244 (426)
Q Consensus 165 ~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~ 244 (426)
+.+..+..+.+.+||++|+||||||+.+.+..+... ..||..|....-..-.+.|.++-. . .
T Consensus 155 s~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq-------------~-~ 216 (554)
T KOG2028|consen 155 SLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ-------------N-E 216 (554)
T ss_pred HHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH-------------H-H
Confidence 344467888899999999999999999998877543 457777765544444455544321 1 1
Q ss_pred HHHhcCCeEEEEEeCCCCccCh-hhhcCCCCCCCCCeEEEE--eecchhhh--hccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 245 EQLKKETKILIILDDIWGSLDL-EAIGIPLADDNGGCKVLL--TARSQDVL--SCEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 245 ~~l~~~k~~LlVlDdv~~~~~~-~~l~~~l~~~~~~s~iiv--Ttr~~~va--~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
.. ..++|.+|++|+|+....- ++ ..+|...+|.-++| ||.+.... ........++.|++|+.++...++.+.
T Consensus 217 ~~-l~krkTilFiDEiHRFNksQQD--~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 217 KS-LTKRKTILFIDEIHRFNKSQQD--TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred Hh-hhcceeEEEeHHhhhhhhhhhh--cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 11 2358999999999754221 22 24556667876666 66665331 123345679999999999999999885
Q ss_pred hC---C------CCCCC---chHHHHHHHHHHcCCchH
Q 044858 320 TG---D------CIENG---ELKSVVTEVVKECAGLPI 345 (426)
Q Consensus 320 ~~---~------~~~~~---~~~~~~~~i~~~c~GlPl 345 (426)
.. . ..+.+ -...+.+-++..|+|-..
T Consensus 294 ia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 294 IASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 42 1 11221 124567778888998754
No 31
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.8e-07 Score=84.66 Aligned_cols=199 Identities=19% Similarity=0.239 Sum_probs=128.0
Q ss_pred cccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 152 HFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.+.+|+.+++++...|. ++.+..+.|+|.+|+|||+.++.+.+.......=...++|++-...+...++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37899999999988775 44555699999999999999999999887542222278999999999999999999999
Q ss_pred C-CCccccCcHHHHHHHHHHHhc-CCeEEEEEeCCCCccCh--hhhcCCCCC-CCCCeEEEE--eecchhhh----hc--
Q 044858 228 G-LKIDQESESVRAWRLLEQLKK-ETKILIILDDIWGSLDL--EAIGIPLAD-DNGGCKVLL--TARSQDVL----SC-- 294 (426)
Q Consensus 228 ~-~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~~s~iiv--Ttr~~~va----~~-- 294 (426)
+ .+....+..+....+.+.+.. ++.+++|||+++....- +.+...+.. ....++|++ .+-+.... ..
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 6 233334555566667777654 67899999999755322 222222211 112454443 33333211 00
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhC----CCCCCCchHHHHHHHHHHcC-CchHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTG----DCIENGELKSVVTEVVKECA-GLPIAIVPI 350 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~-GlPlai~~~ 350 (426)
..-....+..+|-+.+|-.+++..++. ....+++.-+++..++..-+ ---.||..+
T Consensus 178 s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 178 SSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 111233588999999999999998874 22223333334444444444 455555554
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.82 E-value=8.1e-08 Score=83.61 Aligned_cols=180 Identities=15% Similarity=0.165 Sum_probs=96.8
Q ss_pred cCCcccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHH
Q 044858 147 TQDFMHFESRKSTLKGILDALS-----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 147 ~~~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~ 221 (426)
|....+|+|.++.+..+.-.+. +....-+.++|++|+||||||..+.+..... |. +.+.+.-....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl-- 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDL-- 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHH--
Confidence 3467889999988877554433 2346778999999999999999999998754 32 2222111111111
Q ss_pred HHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------hhhhcCC-CCCCC-----------CCe
Q 044858 222 EIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD---------LEAIGIP-LADDN-----------GGC 280 (426)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~-l~~~~-----------~~s 280 (426)
..+...+. ++-+|++|+++.... .++.... ....+ +-+
T Consensus 93 -------------------~~il~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 93 -------------------AAILTNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -------------------HHHHHhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 12222222 356788898875421 1111100 00111 123
Q ss_pred EEEEeecchhhhhccCCce-eeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh
Q 044858 281 KVLLTARSQDVLSCEMDCQ-QNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALK 355 (426)
Q Consensus 281 ~iivTtr~~~va~~~~~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 355 (426)
-|=-|||...+........ ...+|+..+.+|-.+++.+.+..... +-.++.+.+|++.|.|-|--..-+.+..+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3445888765543222223 45689999999999999887643221 22356799999999999987666555444
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2.5e-07 Score=92.11 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=111.7
Q ss_pred CcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.+..++|.+..++.|..++..++.+ .+.++|++|+||||+|+.+++.....+.+...+|.|.+... +..-...-+..+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEe
Confidence 4567889998888888888766654 56999999999999999998876532222212222211000 000000000000
Q ss_pred CCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeec-chhhhhccCCcee
Q 044858 228 GLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTAR-SQDVLSCEMDCQQ 300 (426)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr-~~~va~~~~~~~~ 300 (426)
.. ........+..+.+.+. .+++-++|||+++.. ..++.+...+......+.+|++|. ...+.........
T Consensus 91 ~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 91 DA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred cc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 00 00011122222322221 245679999999754 335555444433334555555554 3333222234456
Q ss_pred eEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 044858 301 NFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIV 348 (426)
Q Consensus 301 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 348 (426)
.+++.+++.++....+.+.+....... -.+....|++.++|.+--+.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 899999999999999998875322111 24567889999999886554
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.3e-07 Score=94.89 Aligned_cols=181 Identities=12% Similarity=0.176 Sum_probs=112.8
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------ccceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENN-------------------LFEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 207 (426)
..+..++|.+.....|..++..++. ..+.++|+.|+||||+|+.+.+...... .|..++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 3567789999999999999887664 5778999999999999999987753211 1111222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeE
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQL----KKETKILIILDDIWGS--LDLEAIGIPLADDNGGCK 281 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 281 (426)
+..+....+. .+..++... ..+++-++|||+++.. ...+.+...+.....+++
T Consensus 92 IDAAs~~~Vd---------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 92 IDAASRTKVE---------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred ecccccCCHH---------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 2222111211 222222222 1246679999999865 344444443433334567
Q ss_pred EEEeecch-hhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 282 VLLTARSQ-DVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 282 iivTtr~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
+|++|.+. .+..........+++.+++.++....+.+.+...... --.+....|++.++|.+..+..+
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 77777553 2221123445789999999999999998877532221 22456778999999987555443
No 35
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=4.3e-07 Score=86.40 Aligned_cols=198 Identities=14% Similarity=0.093 Sum_probs=115.1
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCc--cceEEEEEecCCcCHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNL--FEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.....++|.++....+...+..++. ..+.|+|+.|+||||+|..+.+..-.... +... .....+......+.+.
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 3566789999999999998887664 46899999999999999999887643110 1110 0011111112333332
Q ss_pred HHhC-------CCccc-------cCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeE-EE
Q 044858 225 EKLG-------LKIDQ-------ESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCK-VL 283 (426)
Q Consensus 225 ~~l~-------~~~~~-------~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~-ii 283 (426)
..-. .+.+. .-..+.+..+.+++. .+++-++|+|+++... ..+.+...+..-..++. |+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 2210 01000 011233444555543 3567799999998652 23333333322222344 44
Q ss_pred EeecchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 284 LTARSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 284 vTtr~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
+|++...+.....+....+++.+++.++..+++.+...... ...+....+++.++|.|.....+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55444433322233457999999999999999987432211 124457789999999998665443
No 36
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=4e-07 Score=90.95 Aligned_cols=186 Identities=14% Similarity=0.175 Sum_probs=110.9
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CccceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKEN-------------------NLFEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~w 207 (426)
..+..++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+.+..... +.|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3566788999999999988886654 457899999999999999998765321 11222233
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT 285 (426)
+.......+.++ ++++..+ ...-..+++-++|+|+++.. ...+.+...+......+.+|++
T Consensus 93 idaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 93 IDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred eecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 332222222211 1121111 11111245679999999754 3344554444333345555554
Q ss_pred e-cchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHH
Q 044858 286 A-RSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPIA 351 (426)
Q Consensus 286 t-r~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~ 351 (426)
| ....+..........+++.+++.++....+.+.+..... ..-......|++.++|.+- |+..+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4 433333222344579999999999999888876643221 1224566789999999665 444443
No 37
>PRK04195 replication factor C large subunit; Provisional
Probab=98.75 E-value=2.5e-07 Score=92.56 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=112.1
Q ss_pred CCcccccchHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSN----RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
.....++|++..++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+-++.+...+. +.+..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHH
Confidence 3456789999999998888762 2267899999999999999999998864 32 233444433322 233333
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC------hhhhcCCCCCCCCCeEEEEeecchhhh-h-cc
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD------LEAIGIPLADDNGGCKVLLTARSQDVL-S-CE 295 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~~s~iivTtr~~~va-~-~~ 295 (426)
+....... .+...++-+||||+++.... +..+...+. ..++.||+|+.+..-. . ..
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 32211100 01112578999999976532 333333222 2344566666443211 1 11
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALK 355 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 355 (426)
......+.+.+++.++....+.+.+......- -.+....|++.++|..-.+......+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 23356899999999999999888774222111 145678899999997776655444443
No 38
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=1.7e-07 Score=95.07 Aligned_cols=196 Identities=14% Similarity=0.157 Sum_probs=112.9
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
..+..++|.+..+..|...+..++.. .+.++|+.|+||||+|+.+.+.......+. +..+......+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcC
Confidence 35677899999999999888876654 468999999999999999987654321100 0011111122222110
Q ss_pred hCCC---ccc--cCcHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhc
Q 044858 227 LGLK---IDQ--ESESVRAWRLLEQL----KKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSC 294 (426)
Q Consensus 227 l~~~---~~~--~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~ 294 (426)
-... .+. ....+.+..+.+.+ ..+++-++|||+++.. ...+.+...+-.-...+++|++|.+ ..+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 0000 000 01112222333322 1356779999999755 3445444333222335555554444 444322
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
.......|++.+|+.++....+.+.+...... ........|++.++|.|--+..+.
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23345799999999999999998876422211 224566789999999887554443
No 39
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3e-07 Score=89.60 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=114.4
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
..+..++|.+..+..|..++..++.+ .+.++|+.|+||||+|+.+.+.......... ..+....+- ..+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~i~~g 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LEITKG 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HHHHcc
Confidence 35677899999999988888877754 5899999999999999999887543211000 000001111 111111
Q ss_pred hCCC---cc--ccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEE-eecchhhhhc
Q 044858 227 LGLK---ID--QESESVRAWRLLEQL----KKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLL-TARSQDVLSC 294 (426)
Q Consensus 227 l~~~---~~--~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iiv-Ttr~~~va~~ 294 (426)
.... .+ .....+.+..+.+.+ ..++.-++|||+++.. ..++.+...+......+.+|+ ||....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 1000 00 001112223333322 2356679999999855 446665444433233555554 4444444332
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
.......|.+.+++.++..+.+.+.+...... --.+....|++.++|.+.-...+.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHHHHHHHH
Confidence 33445789999999999999998876532211 124567889999999986444443
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.74 E-value=1.2e-07 Score=78.68 Aligned_cols=122 Identities=17% Similarity=0.149 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc
Q 044858 155 SRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE 234 (426)
Q Consensus 155 gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~ 234 (426)
|++..+..+...+..+..+.+.|+|++|+|||++++.+++..... -..++++..............+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 678888888888877666789999999999999999999987522 2345566554433322211111100
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEEeCCCCc-----cChhhhcCCCCC---CCCCeEEEEeecchh
Q 044858 235 SESVRAWRLLEQLKKETKILIILDDIWGS-----LDLEAIGIPLAD---DNGGCKVLLTARSQD 290 (426)
Q Consensus 235 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~~s~iivTtr~~~ 290 (426)
............++.++++||++.. ..+..+...+.. ...+..+|+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111112346789999999854 122222222211 135778888888654
No 41
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=4.6e-07 Score=89.56 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=115.7
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCc-------------------cceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNL-------------------FEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 207 (426)
.....++|.+.....|...+..++. +.+.++|++|+||||+|+.+.+....... +.....
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3566789998888888887777665 45789999999999999999876542110 011222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT 285 (426)
+..+......++ ++|...... .-..+++-++|+|+++.. ...+.+...+......+.+|++
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 222222222221 122221110 001245679999999754 2334443333322234555544
Q ss_pred ecc-hhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHHHHHhh--c-C-CH
Q 044858 286 ARS-QDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAG-LPIAIVPIAKALK--N-K-SP 359 (426)
Q Consensus 286 tr~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~~~~l~--~-~-~~ 359 (426)
|.+ ..+..........+.+.+++.++....+.+.+..... .--.+....|++.++| ++.++..+-.+.. + . +.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~ 232 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITL 232 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 443 3333223344578999999999999998887742211 1124567788887765 5677777765443 1 2 55
Q ss_pred HHHHHHH
Q 044858 360 YEWRNAL 366 (426)
Q Consensus 360 ~~w~~~l 366 (426)
+....++
T Consensus 233 e~V~~~l 239 (472)
T PRK14962 233 ETVHEAL 239 (472)
T ss_pred HHHHHHH
Confidence 5554443
No 42
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.73 E-value=5.4e-08 Score=84.49 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 044858 152 HFESRKSTLKGILDALS---NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENN 200 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 200 (426)
.|+||+++++++.+.+. ....+++.|+|++|+|||+|.+.++.......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 48999999999999993 44578999999999999999999999887653
No 43
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.71 E-value=4.5e-07 Score=92.83 Aligned_cols=204 Identities=15% Similarity=0.100 Sum_probs=119.5
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc---eEEEEEecCC---cCHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---KVISSRVSQT---PQIKEIQR 221 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~---~~~~~il~ 221 (426)
..+..++|++..+..+...+.......+.|+|++|+||||||+.+++.......+. ..-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34567889998888888877766677899999999999999999988765433331 2234444321 12222211
Q ss_pred HH---------------HHHhCCCcc------------------ccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCh
Q 044858 222 EI---------------AEKLGLKID------------------QESESVRAWRLLEQLKKETKILIILDDIWGS--LDL 266 (426)
Q Consensus 222 ~i---------------~~~l~~~~~------------------~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~ 266 (426)
.+ +...+.... ..-+......+.+.+. .+++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccc
Confidence 11 111111100 0012233455666665 46777776666543 346
Q ss_pred hhhcCCCCCCCCCeEEEE--eecchhhh-hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 267 EAIGIPLADDNGGCKVLL--TARSQDVL-SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 267 ~~l~~~l~~~~~~s~iiv--Ttr~~~va-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
..+...+....+...+++ ||++.... .........+.+.+++.++.+.++.+.+..... .--.++.+.|.+.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHCCCcH
Confidence 666655555455444555 55544321 111223457889999999999999998753211 11245566677766655
Q ss_pred hHHHHHHHHH
Q 044858 344 PIAIVPIAKA 353 (426)
Q Consensus 344 Plai~~~~~~ 353 (426)
+.++..++..
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 7777766554
No 44
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=2.8e-07 Score=92.04 Aligned_cols=186 Identities=11% Similarity=0.171 Sum_probs=112.7
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------ccceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENN-------------------LFEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 207 (426)
..+.+++|.+..+..|..++..++.+ .+.++|+.|+||||+|+.+.+...... .|..++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 35677899999999999999876655 578999999999999999988654221 1222333
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT 285 (426)
+..+....+.++ ++++..+... -..++.-++|||+++.. ...+.+...+..-...+++|++
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 333323333332 2222221110 01255678999999854 3444444333332345666665
Q ss_pred ecc-hhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 286 ARS-QDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 286 tr~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
|.+ ..+.....+....+++++++.++....+.+.+......- ..+....|++.++|.|.-+..+.
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHH
Confidence 543 333221233346789999999998888777764322211 23456788999999886554443
No 45
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.71 E-value=4.8e-08 Score=88.23 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=63.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC--cCHHHHHHHHHHHhCCCccccCcHH-------HHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT--PQIKEIQREIAEKLGLKIDQESESV-------RAW 241 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~il~~i~~~l~~~~~~~~~~~-------~~~ 241 (426)
+-..+.|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-...-..+... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999988764 8999999997766 7999999999333211111111111 112
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 044858 242 RLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 242 ~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
........+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222234589999999999644
No 46
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=6e-07 Score=88.47 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=113.0
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CccceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKEN-------------------NLFEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~w 207 (426)
..+.+++|.+..++.|...+..++.+ .+.++|+.|+||||+|+.+....... +.+..++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 35677899999998888888776655 78999999999999999998643210 11122334
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT 285 (426)
++.+...++.++ ++|+...... - ..+++-++|+|+++.. ...+.+...+..-.+.+.+|++
T Consensus 90 idaas~~~vddI-R~Iie~~~~~---------------P-~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 90 IDAASNTSVDDI-KVILENSCYL---------------P-ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred EecccCCCHHHH-HHHHHHHHhc---------------c-ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 444433333332 2222211100 0 0245668999999754 2344444444333345666665
Q ss_pred ec-chhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 286 AR-SQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 286 tr-~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
|. ...+..........+.+.+++.++....+.+.+...... --.+....|++.++|.+..+...
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 53 344432233445789999999999999999887532221 12456778999999987644443
No 47
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.70 E-value=2.4e-07 Score=95.90 Aligned_cols=177 Identities=18% Similarity=0.243 Sum_probs=102.5
Q ss_pred CCcccccchHHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLK---GILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 148 ~~~~~~~gR~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.....|+|++..+. .+...+..++.+.+.++|++|+||||||+.+++.... +|. .++.+. ....++ +++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~~- 96 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RAE- 96 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HHH-
Confidence 45667889888774 4556666667778899999999999999999987542 231 111110 011111 111
Q ss_pred HHhCCCccccCcHHHHHHHHHHHh-cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe--ecchh--hhhccCC
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLK-KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT--ARSQD--VLSCEMD 297 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT--tr~~~--va~~~~~ 297 (426)
.....+.+. .+++.+|+|||++.. ...+.+...+ ..++.++++ |.+.. +......
T Consensus 97 ---------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 97 ---------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ---------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111111 145689999999754 3344443322 235545553 33321 1111222
Q ss_pred ceeeEEccCCCHHHHHHHHHHhhCC------CCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 298 CQQNFVVDVLNDKEAWSLFKKMTGD------CIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 298 ~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
....+.+++|+.++...++.+.+.. .....--.+....|++.+.|..-.+..+
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 3467999999999999999887641 1111222556788999999875544333
No 48
>PTZ00202 tuzin; Provisional
Probab=98.70 E-value=1.6e-06 Score=82.54 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=105.3
Q ss_pred cccCCcccccchHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHH
Q 044858 145 KSTQDFMHFESRKSTLKGILDALSN---RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 145 ~~~~~~~~~~gR~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~ 221 (426)
..|.+..+|+||+.++..|...|.+ ..++++.|+|++|+|||||++.+..... +. ..+++.. +..++++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHHH
Confidence 3345677899999999999888863 2346889999999999999999986543 11 2222222 7799999
Q ss_pred HHHHHhCCCccccCcHHHHHHHHHHH----hc-CCeEEEEEeCCCCccChhhhc---CCCCCCCCCeEEEEeecchhhh-
Q 044858 222 EIAEKLGLKIDQESESVRAWRLLEQL----KK-ETKILIILDDIWGSLDLEAIG---IPLADDNGGCKVLLTARSQDVL- 292 (426)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~l~~~l----~~-~k~~LlVlDdv~~~~~~~~l~---~~l~~~~~~s~iivTtr~~~va- 292 (426)
.|+.+||.+.. ....+....+.+.+ .. +++.+||+- +.+...+..+. ..+.....-|.|++---.+..-
T Consensus 328 ~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 328 SVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence 99999997432 22233344444433 22 566666663 22222222211 1233344567788765554432
Q ss_pred -hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 293 -SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 293 -~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
......-..|.+++|+.+++.++-.+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1123344678899999999998877664
No 49
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1e-06 Score=84.26 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=112.9
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEE----EEEecCCcCHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVI----SSRVSQTPQIKEIQRE 222 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----wv~v~~~~~~~~il~~ 222 (426)
.....++|.+.....+.+.+..++.+ .+.++|+.|+||+|+|..+.+..-......... -.+.. ........+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHH
Confidence 34567899999999999988877654 688999999999999999887654321110000 00000 0000011111
Q ss_pred HHHHhCCC-------cccc-------CcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEE
Q 044858 223 IAEKLGLK-------IDQE-------SESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKV 282 (426)
Q Consensus 223 i~~~l~~~-------~~~~-------~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~i 282 (426)
|...-... .+.. -..+.+..+.+.+. .+.+-++|+||++.. ...+.+...+..-..++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11110000 0000 01233444444442 356779999999754 3344444333333345666
Q ss_pred EEeecch-hhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 283 LLTARSQ-DVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 283 ivTtr~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
|++|.+. .+.....+....+.+.+++.++..+++.+..... + ......+++.++|.|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 6666654 3333234456799999999999999998764221 1 122367899999999865444
No 50
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=3.1e-07 Score=92.94 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=111.0
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCc-------------------cceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNL-------------------FEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 207 (426)
..+..++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+.+....... |...+.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 3567789999999999999887664 46899999999999999999876432111 111122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeE
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQL----KKETKILIILDDIWGSL--DLEAIGIPLADDNGGCK 281 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 281 (426)
+..+....+. .+..++... ..+++-++|||+++... ..+.+...+..-...++
T Consensus 93 idaAs~~gVd---------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 93 IDAASNTGID---------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred EeccccCCHH---------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 2222222211 122222211 12456799999997543 23333333322233566
Q ss_pred EEEeecch-hhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 282 VLLTARSQ-DVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 282 iivTtr~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
+|++|.+. .+.....+....+.+.+++.++....+.+.+......- -......|++.++|.+.-+..+.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666543 33211223446788999999999999988875322211 24567889999999986555443
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.68 E-value=1.2e-06 Score=84.48 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=109.9
Q ss_pred CcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------ccceEEE
Q 044858 149 DFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFEKVIS 207 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~w 207 (426)
....++|.++.++.+.+.+.+++. +.+.++|++|+||||+|+.+........ +++. ++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 456788999999999998887654 4678999999999999999987753211 1221 22
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT 285 (426)
+..+...+.. -.+++...+.... ..+++-++|+|++... ...+.+...+......+.+|++
T Consensus 91 ~~~~~~~~~~-~~~~l~~~~~~~p----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 91 IDAASNNGVD-DIREILDNVKYAP----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eeccccCCHH-HHHHHHHHHhcCc----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 2222111111 1122222111000 0134558899998654 3344444444333345666666
Q ss_pred ecchh-hhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 286 ARSQD-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 286 tr~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
|.+.. +..........+++.++++++..+++...+...... --.+.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHH
Confidence 65443 221122334678999999999999998876422211 114577889999999987665554
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=7.5e-07 Score=90.24 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=112.4
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCcc--ceEEEEEecCCcCHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLF--EKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~~~~~il~~i~ 224 (426)
..+.+++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+........ .... ...+......+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHH
Confidence 3567789999999999998887665 466899999999999999997664321100 0000 00111111111111
Q ss_pred HHhC-----CCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEee-cchhhh
Q 044858 225 EKLG-----LKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTA-RSQDVL 292 (426)
Q Consensus 225 ~~l~-----~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTt-r~~~va 292 (426)
..-. .+.......+.+..+.+... .++.-++|||+++.. ..++.+...+..-...+.+|++| ....+.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 0000 00000011122223333321 244568999999865 34555554443333455666555 434333
Q ss_pred hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 293 SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
.........+++++++.++..+.+.+.+......- ..+....|++.++|.+.-+..+
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 22334457899999999999999988775322221 2456788999999987655444
No 53
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.66 E-value=1e-06 Score=85.03 Aligned_cols=175 Identities=20% Similarity=0.272 Sum_probs=103.2
Q ss_pred CCcccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALS----N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
..+.++.|.+..++++.+.+. . ..++-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch--
Confidence 345678899999888887663 1 234568999999999999999999876532 2 22211
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------------ChhhhcCCCC--CC
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL----------------DLEAIGIPLA--DD 276 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 276 (426)
.++.... .+ ........+++......+.+|+|||++... .+..+...+. ..
T Consensus 190 --~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111111 10 011223344444444568999999987531 0111111111 12
Q ss_pred CCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 277 NGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 277 ~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
..+..||.||....... ........+.+...+.++..++|...+......++. ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 34677888887643221 112234578999999999999999887543322211 1456777887764
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1e-06 Score=85.07 Aligned_cols=172 Identities=9% Similarity=0.033 Sum_probs=103.3
Q ss_pred cccccchHHHHHHHHHHhccCC----------ccEEEEEcCCCCcHHHHHHHHHHHhhhc-------------------C
Q 044858 150 FMHFESRKSTLKGILDALSNRN----------FNMIGVYGMGGIGKTTLVKEVGRQAKEN-------------------N 200 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~ 200 (426)
+..++|.+..++.|...+..+. ++.+.++|+.|+|||++|+.+.+..-.. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4467888888888888887543 4568899999999999999987754321 1
Q ss_pred ccceEEEEEec-CCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCC
Q 044858 201 LFEKVISSRVS-QTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPL 273 (426)
Q Consensus 201 ~f~~~~wv~v~-~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l 273 (426)
|.|. .++... ....+ +.+..+.+.+. .+++-++++|+++.. ...+.+...+
T Consensus 84 hpD~-~~i~~~~~~i~i---------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPDV-RVVAPEGLSIGV---------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCCE-EEeccccccCCH---------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 1111 111111 11111 12223333321 245568899999755 2333343333
Q ss_pred CCCCCCeEEEEeecc-hhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 044858 274 ADDNGGCKVLLTARS-QDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVP 349 (426)
Q Consensus 274 ~~~~~~s~iivTtr~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 349 (426)
.....++.+|++|.+ ..+.....+....+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHH
Confidence 222335555555555 3443323344579999999999999888754321 1 34577899999999975533
No 55
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.65 E-value=1.2e-06 Score=76.33 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=92.6
Q ss_pred HHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhc--------------------CccceEEEEEec-CCcCHHHHH
Q 044858 163 ILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFEKVISSRVS-QTPQIKEIQ 220 (426)
Q Consensus 163 l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~v~-~~~~~~~il 220 (426)
+.+.+..++. ..+.++|+.|+|||++|+.+.+..... .+.+. .++... ..... +..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~i 81 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQV 81 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HHH
Confidence 4444445554 578999999999999999998775432 11121 122111 11111 111
Q ss_pred HHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecch-hhhhccCC
Q 044858 221 REIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQ-DVLSCEMD 297 (426)
Q Consensus 221 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~-~va~~~~~ 297 (426)
+++...+.... ..+.+-++|+||++... ..+.+...+......+.+|++|++. .+......
T Consensus 82 ~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 82 RELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 12222211000 02456789999997542 3444544443333456677766643 22221223
Q ss_pred ceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH
Q 044858 298 CQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIA 346 (426)
Q Consensus 298 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 346 (426)
....+++.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g--i-~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G--I-S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C--C-C---HHHHHHHHHHcCCCccc
Confidence 4468999999999999998876 2 2 1 45688999999999853
No 56
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=5.4e-07 Score=87.87 Aligned_cols=200 Identities=13% Similarity=0.110 Sum_probs=112.1
Q ss_pred CcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEE-ecCCcCHHHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSR-VSQTPQIKEIQREIAEK 226 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~il~~i~~~ 226 (426)
....++|.+..++.|..++.+++.+ .+.++|+.|+||||+|..+.+.......+....|.. ...........+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 4567889999888888888876654 588999999999999999988764321111100110 00111111111111111
Q ss_pred hCCCc---c--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEee-cchhhhhc
Q 044858 227 LGLKI---D--QESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTA-RSQDVLSC 294 (426)
Q Consensus 227 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTt-r~~~va~~ 294 (426)
...+. + .....+.+..+.+.+. .+.+-++|+|+++.. ..++.+...+..-.+.+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 00000 0 0011223333333331 235668999999755 34555554444333466666555 33333221
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVP 349 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 349 (426)
.......+++.++++++..+.+...+..... .--.+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1223467899999999999888887642211 11245688899999998764444
No 57
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=2.5e-06 Score=86.03 Aligned_cols=198 Identities=15% Similarity=0.133 Sum_probs=111.4
Q ss_pred CcccccchHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.+..++|.+..+..|...+..++ .+.+.++|+.|+||||+|+.+.+.......... ..++.....+.|....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGM 86 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCC
Confidence 45677898888888888887665 467889999999999999999877643110000 0011111111111110
Q ss_pred CCCc---cc--cCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhcc
Q 044858 228 GLKI---DQ--ESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSCE 295 (426)
Q Consensus 228 ~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~ 295 (426)
.... +. ....+.+..+.+.+. .+++-++|||+++.. ...+.|...+..-...+.+|++|.. ..+....
T Consensus 87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000 00 000112222222221 245679999999765 3344454444322234556555544 4333212
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch-HHHHHHHHHh
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP-IAIVPIAKAL 354 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~~l 354 (426)
......+++.+++.++....+...+..... .-..+.+..|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233468899999999999999887643221 112456788999999965 6777665544
No 58
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.60 E-value=8.3e-07 Score=80.10 Aligned_cols=167 Identities=15% Similarity=0.095 Sum_probs=98.0
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHH
Q 044858 159 TLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESV 238 (426)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~ 238 (426)
.+..+..+......+.+.|+|+.|+|||+|++.+++..... ...+.++++....+
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~----------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW----------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------
Confidence 44444444444455689999999999999999999876543 23455665532110
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCc---cChhh-hcCCCCC--CCCCeEEEEeecchhhh--------hccCCceeeEEc
Q 044858 239 RAWRLLEQLKKETKILIILDDIWGS---LDLEA-IGIPLAD--DNGGCKVLLTARSQDVL--------SCEMDCQQNFVV 304 (426)
Q Consensus 239 ~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~-l~~~l~~--~~~~s~iivTtr~~~va--------~~~~~~~~~~~l 304 (426)
....+.+.+.+ --+|+|||+... ..|+. +...+.. ...+.++|+||+...-. ........++++
T Consensus 87 ~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 87 FVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred hhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 00112222221 248899999754 33443 1111111 12234799999865322 011233468999
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
+++++++-.+++.+.+.... -.--+++..-|++.+.|..-.+..+-..
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99999999999988664221 1122567788888888776655544433
No 59
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.2e-06 Score=88.04 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=108.1
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------ccceEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENN-------------------LFEKVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 207 (426)
..+..++|.+..++.+..++..++.+ .+.++|+.|+||||+|+.+.+...... .|...++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 35667889999999999888876654 568999999999999999987653211 1112222
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeE
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCK 281 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 281 (426)
+..+....+. .+..+..... .+++-++|+|+++... ..+.+...+..-...+.
T Consensus 93 i~~~~~~~vd---------------------~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 93 VDAASNTQVD---------------------AMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eeccccCCHH---------------------HHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 2222111211 1222222221 2456799999997553 34444434433334566
Q ss_pred EEEeecc-hhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 282 VLLTARS-QDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 282 iivTtr~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
+|++|.+ +.+..........+++++++.++....+.+.+...... .-......|++.++|.+--+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 6665544 33321112334689999999999998888876422211 12455688999999977633
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.58 E-value=1.2e-06 Score=79.01 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=99.9
Q ss_pred cccccchH-HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC
Q 044858 150 FMHFESRK-STLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 228 (426)
Q Consensus 150 ~~~~~gR~-~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~ 228 (426)
+..|++.. ..+..+.....+.....+.|+|+.|+|||+|++.+++....+ ...+.|++..+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH-----
Confidence 44454433 333333333333334569999999999999999999886644 23455665322 11111
Q ss_pred CCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc---Chhh-hcCCCCC-CCCCeEEEEeecchhhh-----h---cc
Q 044858 229 LKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL---DLEA-IGIPLAD-DNGGCKVLLTARSQDVL-----S---CE 295 (426)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~~s~iivTtr~~~va-----~---~~ 295 (426)
...++.+. +.-+|||||+.... .|.. +...+.. ..++..||+||+...-. . ..
T Consensus 85 ------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 85 ------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred ------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 11223332 34599999997542 2332 2211111 12356799999864321 0 01
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
......+++++++.++-.+++.+.+....- .--.+...-|++.++|-.-.+..+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHH
Confidence 122458999999999999999987642211 122456778888888766655333
No 61
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.58 E-value=2.1e-07 Score=87.81 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc--CHHHHHHHHHHHhCCCccccCcHHH-------HHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP--QIKEIQREIAEKLGLKIDQESESVR-------AWRL 243 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~il~~i~~~l~~~~~~~~~~~~-------~~~l 243 (426)
+-..|+|++|+|||||++.+|+....+ +|+..+|+.+.+.. ++.++++.|...+-......+.... ....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999998875 89999999998887 7788888886322111111111111 1112
Q ss_pred HHHHhcCCeEEEEEeCCCCc
Q 044858 244 LEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 244 ~~~l~~~k~~LlVlDdv~~~ 263 (426)
......+++++|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 22223579999999999643
No 62
>PRK09087 hypothetical protein; Validated
Probab=98.58 E-value=1.1e-06 Score=78.57 Aligned_cols=168 Identities=16% Similarity=0.087 Sum_probs=95.8
Q ss_pred ccccc--chHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 150 FMHFE--SRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 150 ~~~~~--gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
+..|+ +.....-.+++.+.+...+.+.|+|+.|+|||+|++.+++.... .+++.. .+..++.
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--- 83 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--- 83 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH---
Confidence 44554 22333333333322333467899999999999999988876432 133321 1111111
Q ss_pred CCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-ChhhhcCCCC-CCCCCeEEEEeecchhhh--------hccCC
Q 044858 228 GLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-DLEAIGIPLA-DDNGGCKVLLTARSQDVL--------SCEMD 297 (426)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~~~~l~~~l~-~~~~~s~iivTtr~~~va--------~~~~~ 297 (426)
..+.+ -+|++||+.... .-..+...+. ....|..||+|++..... .....
T Consensus 84 -----------------~~~~~---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~ 143 (226)
T PRK09087 84 -----------------NAAAE---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLK 143 (226)
T ss_pred -----------------Hhhhc---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHh
Confidence 11111 278889996432 1111221111 112367799988754321 11223
Q ss_pred ceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 298 CQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 298 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
....+++++++.++-.+++.+.+....- .--+++..-|++.+.|..-++..+...|
T Consensus 144 ~gl~~~l~~pd~e~~~~iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 144 AATVVEIGEPDDALLSQVIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred CCceeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4578999999999999999998853211 1225677888888888877776544333
No 63
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.5e-06 Score=87.19 Aligned_cols=197 Identities=14% Similarity=0.141 Sum_probs=108.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
..+..++|++..++.+...+..++. +.+.++|+.|+||||+|+.+.+...... |.... .+......+.+...
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTN 85 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcC
Confidence 3566789999999999998876554 4688999999999999999988754211 11100 11111111111111
Q ss_pred hCCCc---cc--cCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEee-cchhhhhc
Q 044858 227 LGLKI---DQ--ESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTA-RSQDVLSC 294 (426)
Q Consensus 227 l~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTt-r~~~va~~ 294 (426)
..... +. ....+.+..+.+.+. .+++-++|+|+++.. ..++.+...+......+.+|++| ....+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 00000 00 001111222222211 123447999999754 34444444332222345555444 43333221
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPIAK 352 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~ 352 (426)
.......+++.++++++....+...+......- -.+.+..+++.++|.|. |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 223356899999999999999988764221111 13457789999999665 4444433
No 64
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=3.3e-06 Score=81.74 Aligned_cols=181 Identities=12% Similarity=0.170 Sum_probs=104.6
Q ss_pred CcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhc------Cccce-EEEEEecCCcCHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKEN------NLFEK-VISSRVSQTPQIKEIQ 220 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~-~~wv~v~~~~~~~~il 220 (426)
...+++|.+..++.+...+.+++. +.+.++|+.|+||||+|+.+.+..... ..|.. .+-+......+..+ .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 566788999999999999887654 478899999999999999998765431 11221 11111111111111 1
Q ss_pred HHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecc-hhhhhccCC
Q 044858 221 REIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARS-QDVLSCEMD 297 (426)
Q Consensus 221 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~~~ 297 (426)
+++...+... .. .+++-++++|++.... .++.+...+......+.+|++|.. .........
T Consensus 94 ~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 1222211100 00 1345689999986542 344443333222234555555533 222211223
Q ss_pred ceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 298 CQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 298 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
....+++.++++++....+.+.+...... --.+....|++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 34579999999999999988876422211 11456788888999876644
No 65
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.56 E-value=3.5e-06 Score=76.94 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=115.5
Q ss_pred HHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCcc----ceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 044858 158 STLKGILDALS---NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLF----EKVISSRVSQTPQIKEIQREIAEKLGLK 230 (426)
Q Consensus 158 ~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~il~~i~~~l~~~ 230 (426)
+.++.|.+.+. ....+.+.|+|.+|.|||++++.+.........- -.++.+.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34555555554 3356789999999999999999999876432111 1467788889999999999999999988
Q ss_pred ccccCcHHH-HHHHHHHHhcCCeEEEEEeCCCCccC---------hhhhcCCCCCCCCCeEEEEeecchhhhh----ccC
Q 044858 231 IDQESESVR-AWRLLEQLKKETKILIILDDIWGSLD---------LEAIGIPLADDNGGCKVLLTARSQDVLS----CEM 296 (426)
Q Consensus 231 ~~~~~~~~~-~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~l~~~~~~s~iivTtr~~~va~----~~~ 296 (426)
......... ..+..+.+..-+--+||||++++... .+.++ .+.+.-.=+-|.+-|+.-.-+- ...
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 755443333 33444555444566999999987511 11111 1212222234555555432221 012
Q ss_pred CceeeEEccCCCH-HHHHHHHHHhh---C-CCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 297 DCQQNFVVDVLND-KEAWSLFKKMT---G-DCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 297 ~~~~~~~l~~L~~-~e~~~Lf~~~~---~-~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
+....+.|+.... ++...|+...- . .....-...++++.|...++|+.=-+..+-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 2345677776544 34444543332 1 111122336789999999999875554443
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.2e-06 Score=89.93 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=108.4
Q ss_pred CcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCcc---------------------ceEE
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLF---------------------EKVI 206 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---------------------~~~~ 206 (426)
.+..++|.+..++.|...+..+++. .+.++|+.|+||||+|+.+.+........ ..++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 4567889999999999998876654 57899999999999999998776421111 0011
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCe
Q 044858 207 SSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQL----KKETKILIILDDIWGS--LDLEAIGIPLADDNGGC 280 (426)
Q Consensus 207 wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s 280 (426)
++.......+ +.+..+.+.+ ..++.-++|||+++.. ...+.|...+..-...+
T Consensus 93 eidaas~~~V---------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 93 EIDAASHGGV---------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred EecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 2211111111 1222222221 1245568899999755 34455544443333455
Q ss_pred EEEEee-cchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 281 KVLLTA-RSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 281 ~iivTt-r~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
.+|++| ....+..........|++.+++.++..+++.+.+....... -......|++.++|.+..+
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 655555 44444322334567899999999999998888764222111 2345678899999988544
No 67
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.56 E-value=1.3e-06 Score=78.69 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=88.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
....+.|+|+.|+|||+||+.+++.....+ + ...+++..... ..+ ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~------~~~---------------------~~~--~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPL------LAF---------------------DFD--P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhH------HHH---------------------hhc--c
Confidence 446789999999999999999998764321 2 23444433211 000 111 1
Q ss_pred CeEEEEEeCCCCccChh--hhcCCCCC-CCCCe-EEEEeecchhhhhc-------cCCceeeEEccCCCHHHHHHHHHHh
Q 044858 251 TKILIILDDIWGSLDLE--AIGIPLAD-DNGGC-KVLLTARSQDVLSC-------EMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 251 k~~LlVlDdv~~~~~~~--~l~~~l~~-~~~~s-~iivTtr~~~va~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
..-+|++||+.....+. .+...+.. ...+. .+|+|++....... .......+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 23478999997543222 22222211 11233 46666664332110 1122368999999998877777765
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALK 355 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 355 (426)
+.... -.--++....+++.+.|.+..+..+...+.
T Consensus 170 ~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 170 AAERG-LQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 43211 112245778888899999988877766553
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.54 E-value=1e-06 Score=93.34 Aligned_cols=183 Identities=13% Similarity=0.120 Sum_probs=105.6
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceEEE-EEecCCcCHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKVIS-SRVSQTPQIKEIQRE 222 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~v~~~~~~~~il~~ 222 (426)
....+++||++++..++..|.......+.++|++|+||||+|+.+.+....... ....+| +..+.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 345789999999999999888766667789999999999999999988643211 122232 22221000
Q ss_pred HHHHhCCCccccCcHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-------Chh--hhcCCCCCCCCCeEEEEeecchhh-
Q 044858 223 IAEKLGLKIDQESESVRAWRLLEQLK-KETKILIILDDIWGSL-------DLE--AIGIPLADDNGGCKVLLTARSQDV- 291 (426)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-------~~~--~l~~~l~~~~~~s~iivTtr~~~v- 291 (426)
...........+..+++.+. .+++.+|++|+++... .-+ .+..+... ...-++|-||..+..
T Consensus 257 ------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 257 ------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWAEYK 329 (852)
T ss_pred ------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHHHHh
Confidence 00000111123344444443 2468999999997542 111 12222211 224566666655321
Q ss_pred ---h--hccCCceeeEEccCCCHHHHHHHHHHhhC---CCCCCCchHHHHHHHHHHcCCch
Q 044858 292 ---L--SCEMDCQQNFVVDVLNDKEAWSLFKKMTG---DCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 292 ---a--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
. .........+.+++++.++..+++..... ....-.-..+....+++.+.+.+
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 0 11223457899999999999999755442 11111122455667777776643
No 69
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=3e-06 Score=86.07 Aligned_cols=199 Identities=12% Similarity=0.132 Sum_probs=114.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccce--EEEEEecCCcCHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEK--VISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~v~~~~~~~~il~~i~ 224 (426)
..+..++|.+..++.|.+.+..++.+ .+.++|+.|+||||+|+.+.+.......... ..+ ..+....-.+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHh
Confidence 35677899999999999998876644 6889999999999999999886542211000 000 0001111111121
Q ss_pred HHhCCCc-----cccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEee-cchhhh
Q 044858 225 EKLGLKI-----DQESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTA-RSQDVL 292 (426)
Q Consensus 225 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTt-r~~~va 292 (426)
..-.... ......+.+..+.+.+. .+++-++|+|+++... ..+.+...+..-..++.+|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1111000 00111222333333332 2345689999997553 3444444443333456666555 434433
Q ss_pred hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 293 SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
.........+.+.+++.++....+.+.+...... --.+....|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2223345789999999999999998877422211 123567889999999987665544
No 70
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.52 E-value=1.8e-06 Score=83.91 Aligned_cols=202 Identities=16% Similarity=0.249 Sum_probs=113.1
Q ss_pred CCcccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALS----N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
..+..+.|++..++++.+.+. . ..++-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh--
Confidence 345567899998888877653 1 345678999999999999999999876532 222221
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C-hhhhcCC---CC--CC
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------D-LEAIGIP---LA--DD 276 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~-~~~l~~~---l~--~~ 276 (426)
.++.... .+ .....+..+++......+.+|+|||++... . ...+... +. ..
T Consensus 199 --~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1121111 00 111233444555444568999999997531 0 1111111 11 11
Q ss_pred CCCeEEEEeecchhhhhc----cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch-HHHHHH-
Q 044858 277 NGGCKVLLTARSQDVLSC----EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP-IAIVPI- 350 (426)
Q Consensus 277 ~~~s~iivTtr~~~va~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~- 350 (426)
..+..||.||........ ...-...+++++.+.++-.++|+..+......++. ....+++.+.|.- --|..+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~sgadl~~l~ 345 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGASGADLKAIC 345 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCCHHHHHHHH
Confidence 235677777765432211 11234579999999999999999887543322211 1355677777753 222222
Q ss_pred --HHHhh---cC---CHHHHHHHHHHHhh
Q 044858 351 --AKALK---NK---SPYEWRNALRQLKR 371 (426)
Q Consensus 351 --~~~l~---~~---~~~~w~~~l~~l~~ 371 (426)
|++.+ +. +..+...+++....
T Consensus 346 ~eA~~~a~~~~~~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 346 TEAGMFAIRDDRTEVTMEDFLKAIEKVMG 374 (389)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhc
Confidence 22221 11 56666666665543
No 71
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=9.7e-06 Score=77.20 Aligned_cols=195 Identities=11% Similarity=0.086 Sum_probs=121.9
Q ss_pred CcccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.+....||+.+++.+..++. .+..+.+-|.|-+|.|||.+...++.+......-.++++++...-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45678999999999888876 34567889999999999999999998876532223556776655456777888877
Q ss_pred HHhCCCccc-cCcHHHHHHHHHHHhcCC-eEEEEEeCCCCccC--hhhhcCCC-CCCCCCeEEEEeecchhh--------
Q 044858 225 EKLGLKIDQ-ESESVRAWRLLEQLKKET-KILIILDDIWGSLD--LEAIGIPL-ADDNGGCKVLLTARSQDV-------- 291 (426)
Q Consensus 225 ~~l~~~~~~-~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~l~~~l-~~~~~~s~iivTtr~~~v-------- 291 (426)
..+...... .........+.....+.+ .+|+|+|+.+.... -..+...| ...-+++++|+..--...
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 766211111 112333444555555444 79999999975521 11122222 123346666654322211
Q ss_pred -hh-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 292 -LS-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 292 -a~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
.. ........+...|.+.++..++|..++........+....+.++++|.|.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 11 01223568899999999999999999875544444444455555555543
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=7e-06 Score=82.95 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=108.6
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccc---------------------eE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFE---------------------KV 205 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---------------------~~ 205 (426)
..+..++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.+........+ .+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 35667899999999999998877655 478999999999999999987654211100 11
Q ss_pred EEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCC
Q 044858 206 ISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQL----KKETKILIILDDIWGS--LDLEAIGIPLADDNGG 279 (426)
Q Consensus 206 ~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 279 (426)
+.+..+....+ +.+..+.+.+ ..+++-++|+|+++.. ...+.|...+..-...
T Consensus 90 ieidaas~~gv---------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~ 148 (584)
T PRK14952 90 VELDAASHGGV---------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH 148 (584)
T ss_pred EEeccccccCH---------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC
Confidence 12211111111 1222222222 1245568999999754 3444444444333335
Q ss_pred eEEEE-eecchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHH
Q 044858 280 CKVLL-TARSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPI 350 (426)
Q Consensus 280 s~iiv-Ttr~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 350 (426)
+.+|+ ||....+.....+....+++.+++.++..+.+.+.+......- -.+....|++.++|.+- ++..+
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554 4444444322233457899999999999988887764322111 23456778899999775 44443
No 73
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=9.3e-06 Score=80.93 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=109.8
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCc------------------cc-eEEE
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNL------------------FE-KVIS 207 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------f~-~~~w 207 (426)
.....++|.+.....|...+..++.+ ++.++|+.|+||||+|+.+.+..-.... +. .++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 35667889998888888888776655 5689999999999999998876532110 00 1122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEe
Q 044858 208 SRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 208 v~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivT 285 (426)
+..+....+.++. +++..... .-..+++-++|+|+++.. +..+.+...+-.-...+++|++
T Consensus 91 ldaas~~gId~IR-elie~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 91 MDAASNRGIDDIR-ELIEQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred eccccccCHHHHH-HHHHHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 2211111222211 11111100 000145669999999755 2344443333222345666666
Q ss_pred ecch-hhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 286 ARSQ-DVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 286 tr~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
|.+. .+..........+++.+++.++....+.+.+...... --.+.+..|++.++|.+.-+..+.
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6553 2221122345789999999999999988777532211 124567889999999986555443
No 74
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=7e-06 Score=83.99 Aligned_cols=197 Identities=13% Similarity=0.150 Sum_probs=113.4
Q ss_pred CcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.+..++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+......... ....++.....+.|....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 456788999999999888876654 4568999999999999999987764211100 001112222333333222
Q ss_pred CCCc---c--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhcc
Q 044858 228 GLKI---D--QESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSCE 295 (426)
Q Consensus 228 ~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~ 295 (426)
.... + .....+.+..+.+.+. .+++-++|||+++.. ...+.+...+......+.+|++|.+ ..+....
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1110 0 0111122233333222 145679999999754 3344444333333345666665543 3332212
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAK 352 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 352 (426)
......+.+.+++..+....+...+...... --.+.+..|++.++|.+..+.....
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2334678899999999998888876532211 1245678899999998875554433
No 75
>PF14516 AAA_35: AAA-like domain
Probab=98.46 E-value=2.2e-05 Score=74.60 Aligned_cols=199 Identities=12% Similarity=0.170 Sum_probs=116.8
Q ss_pred ccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-----cCHHHHHHHHH-
Q 044858 151 MHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-----PQIKEIQREIA- 224 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~il~~i~- 224 (426)
...+.|...-+.+.+.+.++ -..+.|.|+..+|||||...+.+..... .+. .+++++..- .+...+++.++
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHHHH
Confidence 34567876666677776653 3579999999999999999999888764 243 446665431 24555555554
Q ss_pred ---HHhCCCcccc-------Cc-HHHHHHHHHHHh--cCCeEEEEEeCCCCccC---h-hhhcCCCC------C-C--CC
Q 044858 225 ---EKLGLKIDQE-------SE-SVRAWRLLEQLK--KETKILIILDDIWGSLD---L-EAIGIPLA------D-D--NG 278 (426)
Q Consensus 225 ---~~l~~~~~~~-------~~-~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~---~-~~l~~~l~------~-~--~~ 278 (426)
++++....-. +. ......+.+.+. .+++.+|+||+++.... + .++...+. . . -.
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 4554432110 11 111122223332 25899999999975422 1 11111110 0 0 01
Q ss_pred CeEEEEeecchh-h-h---hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 279 GCKVLLTARSQD-V-L---SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 279 ~s~iivTtr~~~-v-a---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
.-++++....+. . . .........++|++|+.+|...|+...-.. . . ....++|...+||+|.-+..++..
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~-~---~~~~~~l~~~tgGhP~Lv~~~~~~ 242 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-F-S---QEQLEQLMDWTGGHPYLVQKACYL 242 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-C-C---HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 122222221111 1 1 112233458999999999999998876322 1 1 223889999999999999999999
Q ss_pred hhcC
Q 044858 354 LKNK 357 (426)
Q Consensus 354 l~~~ 357 (426)
+...
T Consensus 243 l~~~ 246 (331)
T PF14516_consen 243 LVEE 246 (331)
T ss_pred HHHc
Confidence 9753
No 76
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=8.4e-06 Score=83.35 Aligned_cols=182 Identities=10% Similarity=0.139 Sum_probs=109.8
Q ss_pred CcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhh---------------------cCccceEE
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKE---------------------NNLFEKVI 206 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~~~~ 206 (426)
.+..++|.+...+.|...+..++.. .+.++|+.|+||||+|+.+...... ..+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 5667889999999999998877654 5789999999999999998876531 112332 2
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEE
Q 044858 207 SSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLL 284 (426)
Q Consensus 207 wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iiv 284 (426)
.+..+...+..++. +++.++.... ..+++-++|+|+++.. ...+.+...+..-..++.+|+
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 22222222222221 2222211100 0134568899998765 335555444433334566555
Q ss_pred ee-cchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 044858 285 TA-RSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVP 349 (426)
Q Consensus 285 Tt-r~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 349 (426)
+| ....+..........+++.+++.++....+.+.+...... --.+.+..|++.++|..--+..
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 44 4444432223445789999999999999998876432211 1134678899999997754433
No 77
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=8.9e-06 Score=80.33 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
.-+.|+|..|+|||+|++.+.+.......-..+++++ ..++...+...+.... .......+.+. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--cC
Confidence 4588999999999999999998765432222344543 3466667666553210 12233334443 34
Q ss_pred EEEEEeCCCCcc---Chh-hhcCCCCC-CCCCeEEEEeecchhhhh--------ccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 253 ILIILDDIWGSL---DLE-AIGIPLAD-DNGGCKVLLTARSQDVLS--------CEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 253 ~LlVlDdv~~~~---~~~-~l~~~l~~-~~~~s~iivTtr~~~va~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
-+|+|||+.... .+. .+...+.. ...|..||+|+....... ......-.+.+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999997542 222 22222211 123457888876542110 11223457889999999999999998
Q ss_pred hCCCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHhh-----c---C--CHHHHHHHHHHH
Q 044858 320 TGDCIE-NGELKSVVTEVVKECAGLPIAIVPIAKALK-----N---K--SPYEWRNALRQL 369 (426)
Q Consensus 320 ~~~~~~-~~~~~~~~~~i~~~c~GlPlai~~~~~~l~-----~---~--~~~~w~~~l~~l 369 (426)
+..... ..--+++..-|++.++|.|-.+..+...+. . + +...-+.++..+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 853221 123367889999999999998876654431 1 2 555556666554
No 78
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=1.2e-05 Score=79.99 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=107.0
Q ss_pred CcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CccceEEEE
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKEN-------------------NLFEKVISS 208 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv 208 (426)
.+..++|.+.....+..++..++.. .+.++|+.|+||||+|+.+....... +.|...+.+
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 5567889999999999988876544 56789999999999999988764310 001112222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEE
Q 044858 209 RVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKV 282 (426)
Q Consensus 209 ~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~i 282 (426)
..+...... .+..+.+.+. .+++-++|+|+++.. ...+.+...+....+.+.+
T Consensus 94 daas~~gvd---------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 94 DAASNRGID---------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred eCccCCCHH---------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 221111111 1222222221 246679999999754 2344443333322334455
Q ss_pred EEee-cchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 283 LLTA-RSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 283 ivTt-r~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
|++| +...+..........+.+.+++.++....+.+.+...... .-.+....|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 4333321112334689999999999999888876422211 123567788999999876555444
No 79
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=8.2e-06 Score=83.06 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=108.7
Q ss_pred CcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEE-ecCCcCHHHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSR-VSQTPQIKEIQREIAEK 226 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~il~~i~~~ 226 (426)
.+..++|.+..+..|...+..++.. .+.++|+.|+||||+|+.+.+..-.....+.-.|.. +...+......+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 5667889999999988888776654 588999999999999999987764321111000110 00111111111111110
Q ss_pred hCCCc---c--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEee-cchhhhhc
Q 044858 227 LGLKI---D--QESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTA-RSQDVLSC 294 (426)
Q Consensus 227 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTt-r~~~va~~ 294 (426)
-..+. + .....+.+..+.+.+. .+.+-++|+|+++... ..+.+...+..-...+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000 0 0011223333333331 2345688999987553 3444444443323345555444 43443322
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
.......+++.+++.++....+.+.+...... --.+.+..|++.++|.+--+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHH
Confidence 23446789999999999988888766422111 12456788999999965533
No 80
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.43 E-value=3.3e-06 Score=88.76 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=94.5
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc---c-ceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL---F-EKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~wv~v~~~~~~~~il~~i~ 224 (426)
...+++||+++++.++..|......-+.++|++|+|||++|+.+.+....... + ...+|. + +...+...
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~-- 252 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG-- 252 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh--
Confidence 45679999999999999888666667889999999999999999988643211 1 233332 1 11111110
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------Chhh-hcCCCCCCCCCeEEEEeecchhh--
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL----------DLEA-IGIPLADDNGGCKVLLTARSQDV-- 291 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~-l~~~l~~~~~~s~iivTtr~~~v-- 291 (426)
..........+..+++.+...++.+|++|+++... +... +...+ . ...-++|-+|.....
T Consensus 253 -----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-~-~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 253 -----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-S-SGKLRCIGSTTYEEYKN 325 (731)
T ss_pred -----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-h-CCCeEEEEecCHHHHHH
Confidence 00001122345556666554568999999997331 1112 22222 1 123455555543211
Q ss_pred --h--hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 292 --L--SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 292 --a--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
. .........+++++++.++..+++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 1112234689999999999999999655
No 81
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.43 E-value=1.2e-06 Score=83.10 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=64.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC--cCHHHHHHHHHHHhCCCccccCcHH------H-HH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT--PQIKEIQREIAEKLGLKIDQESESV------R-AW 241 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~il~~i~~~l~~~~~~~~~~~------~-~~ 241 (426)
.-..+.|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.++..+-...-..+... . .+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34678999999999999999999988764 8999899999865 7899999999543322111111111 1 11
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 044858 242 RLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 242 ~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
.......++++.+|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222334689999999999643
No 82
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.43 E-value=2.9e-06 Score=80.47 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=97.2
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.....++|.+...+.+..++..++. .++.++|++|+|||++|+.+++.... ....++.+. .... ..+..+..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~-~i~~~l~~ 90 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRID-FVRNRLTR 90 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHH-HHHHHHHH
Confidence 4567788999999999998876654 46667999999999999999886532 123344333 2211 11111111
Q ss_pred hCCCccccCcHHHHHHHHHHH-hcCCeEEEEEeCCCCc--cCh-hhhcCCCCCCCCCeEEEEeecchhhh-hccCCceee
Q 044858 227 LGLKIDQESESVRAWRLLEQL-KKETKILIILDDIWGS--LDL-EAIGIPLADDNGGCKVLLTARSQDVL-SCEMDCQQN 301 (426)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~--~~~-~~l~~~l~~~~~~s~iivTtr~~~va-~~~~~~~~~ 301 (426)
+ .... ..+.+-+|||||++.. ... ..+...+.....++++|+||...... ....+....
T Consensus 91 ~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 F----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred H----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1 0111 0124568999999754 111 22322222234567888888654321 111223356
Q ss_pred EEccCCCHHHHHHHHHHhhC------CCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 302 FVVDVLNDKEAWSLFKKMTG------DCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 302 ~~l~~L~~~e~~~Lf~~~~~------~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
+.++..+.++..+++...+. .....+-..+....+++..+|.-..+
T Consensus 155 i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~ 206 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRT 206 (316)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 78877888887766543221 00111112334566776666644333
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=98.42 E-value=5.9e-06 Score=74.52 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.|+|+.|+|||.|++.+++....+ -..++|++.. ++... ...+.+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~------~~~~~-----------------~~~~~~~~~~~-- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA------ELLDR-----------------GPELLDNLEQY-- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH------HHHhh-----------------hHHHHHhhhhC--
Confidence 568999999999999999998876543 2345666543 22211 01233333321
Q ss_pred EEEEEeCCCCc---cChhh-hcCCCCC-CCCCeEEEEeecchhhhhc--------cCCceeeEEccCCCHHHHHHHHHHh
Q 044858 253 ILIILDDIWGS---LDLEA-IGIPLAD-DNGGCKVLLTARSQDVLSC--------EMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 253 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~iivTtr~~~va~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
=+|++||+... ..|+. +...+.. ...|.++|+|++.....-. .......+++++++.++-.++++.+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 27889999633 34543 3222211 1246678888876432110 1122367899999999999999866
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
+.... -.--+++..-|++.+.|..-.+..+-..
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 54221 1111467778888888776555444433
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.41 E-value=4.1e-06 Score=89.17 Aligned_cols=158 Identities=15% Similarity=0.259 Sum_probs=94.2
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc---c-ceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL---F-EKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~wv~v~~~~~~~~il~~i~ 224 (426)
...+++||+++++.+++.|.......+.++|++|+|||++|+.++......+. . ...+|. + +...++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a--- 248 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA--- 248 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc---
Confidence 34678999999999999998665566789999999999999999887643211 1 233442 1 2222111
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------ChhhhcCCCCCCCCCeEEEEeecchhh----
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL---------DLEAIGIPLADDNGGCKVLLTARSQDV---- 291 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~s~iivTtr~~~v---- 291 (426)
+... .......+..+++.+...++.+|++|+++... +...+..+... ...-++|.+|..+..
T Consensus 249 ---g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 ---GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKHI 323 (821)
T ss_pred ---cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHHH
Confidence 1111 11122345556666655578999999996331 11222222211 123455555554432
Q ss_pred h--hccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 292 L--SCEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 292 a--~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
. .........+.+...+.++...++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 112234567889999999988888754
No 85
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.38 E-value=3.1e-06 Score=77.82 Aligned_cols=135 Identities=15% Similarity=0.222 Sum_probs=70.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
....+.++|++|+||||+|+.+++.......-....++.++. .++.... .+ .. ......+++..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~~---~g-----~~-~~~~~~~~~~a--- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGEY---IG-----HT-AQKTREVIKKA--- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhhh---cc-----ch-HHHHHHHHHhc---
Confidence 345678999999999999999987653221111112233322 1111110 00 00 11122222222
Q ss_pred CeEEEEEeCCCCcc----------ChhhhcCCCCCCCCCeEEEEeecchhhh-------hccCCceeeEEccCCCHHHHH
Q 044858 251 TKILIILDDIWGSL----------DLEAIGIPLADDNGGCKVLLTARSQDVL-------SCEMDCQQNFVVDVLNDKEAW 313 (426)
Q Consensus 251 k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~s~iivTtr~~~va-------~~~~~~~~~~~l~~L~~~e~~ 313 (426)
...+|+||+++... ....+...+........+|+++...... .........+++++++.++-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23589999997532 1222333332333344556665443210 001122357899999999999
Q ss_pred HHHHHhhC
Q 044858 314 SLFKKMTG 321 (426)
Q Consensus 314 ~Lf~~~~~ 321 (426)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99998875
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.9e-05 Score=77.98 Aligned_cols=183 Identities=14% Similarity=0.151 Sum_probs=106.1
Q ss_pred CcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC---------------------ccceEE
Q 044858 149 DFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENN---------------------LFEKVI 206 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~~~~ 206 (426)
.+..++|.+..+..+...+..++. +.+.++|+.|+||||+|+.+.+...... +++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 566788999999999988887665 5678999999999999999987653211 111 11
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEE
Q 044858 207 SSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLL 284 (426)
Q Consensus 207 wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iiv 284 (426)
++.........++ +++.+.+. ..-..+++-++|+|+++.. ...+.+...+.....++.+|+
T Consensus 94 ~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 94 EIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred EeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 1111111111111 11111110 0001245678999998644 233334333333233556666
Q ss_pred eecc-hhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHH
Q 044858 285 TARS-QDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPI 350 (426)
Q Consensus 285 Ttr~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 350 (426)
+|.. ..+..........+++.++++++....+.+.+...... --.+.+..|++.++|.+- |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6533 32222122345689999999999998888776422111 124567889999999765 44443
No 87
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.4e-05 Score=81.86 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=106.0
Q ss_pred CcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCcc----ce------------EEEEEec
Q 044858 149 DFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLF----EK------------VISSRVS 211 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~------------~~wv~v~ 211 (426)
.+..++|.+..+..|...+..++. +.+.++|+.|+||||+|+.+....-..... .| ++++...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 566788999999999998887654 466899999999999999998764321100 00 0111110
Q ss_pred CCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEE-E
Q 044858 212 QTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVL-L 284 (426)
Q Consensus 212 ~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ii-v 284 (426)
... ....+..+.+.+. .+++-++|+|+++.. ..+..+...+-.-...+.+| +
T Consensus 96 sn~---------------------~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 96 SNN---------------------GVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred ccC---------------------CHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 001 1122333333332 245669999999754 34555443332222344444 5
Q ss_pred eecchhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 044858 285 TARSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIV 348 (426)
Q Consensus 285 Ttr~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 348 (426)
|+....+..........+.+.+++.++....+...+......- -.+.+..|++.++|.+.-+.
T Consensus 155 Tte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 155 TTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred cCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 5554444322233456899999999999988887654221111 13457789999999765333
No 88
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.37 E-value=8.1e-06 Score=79.37 Aligned_cols=136 Identities=24% Similarity=0.241 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccC
Q 044858 156 RKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQES 235 (426)
Q Consensus 156 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~ 235 (426)
|...+.++++.+..... ++.|.|+.++||||+++.+....... .+++..........-+.+...
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~---------- 85 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLR---------- 85 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHH----------
Confidence 44455666666554433 99999999999999997666554432 455543322211111111111
Q ss_pred cHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhh-----hccCCceeeEEccCCCHH
Q 044858 236 ESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVL-----SCEMDCQQNFVVDVLNDK 310 (426)
Q Consensus 236 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va-----~~~~~~~~~~~l~~L~~~ 310 (426)
.+...- ..++..++||.|+....|......+.+..+. +|++|+.+.... ....+....+++-|||..
T Consensus 86 ------~~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 86 ------AYIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred ------HHHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111111 1267899999999999999876666665555 889988887553 223455678999999999
Q ss_pred HHHHH
Q 044858 311 EAWSL 315 (426)
Q Consensus 311 e~~~L 315 (426)
|...+
T Consensus 158 Efl~~ 162 (398)
T COG1373 158 EFLKL 162 (398)
T ss_pred HHHhh
Confidence 98764
No 89
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=2.4e-05 Score=79.14 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=109.6
Q ss_pred CCcccccchHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
..+..++|.+..+..|...+.+++.+ .+.++|+.|+||||+|+.+.+.......... .++......+.|...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDND 85 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcC
Confidence 35667889999999999988876554 5889999999999999999887542110000 000000000111100
Q ss_pred hCCC---ccc--cCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecc-hhhhhc
Q 044858 227 LGLK---IDQ--ESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARS-QDVLSC 294 (426)
Q Consensus 227 l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~-~~va~~ 294 (426)
-... .+. ....+.+..+.+.+. .+++-++|+|+++... .++.+...+..-...+.+|++|.. ..+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 000 011112222222211 2456689999997553 355554444333345666655543 333221
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
.......+++.+++.++....+.+.+..... +--.+....|++.++|.+..+..+
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2234567899999999999888887642221 122456778999999988654443
No 90
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.33 E-value=4.7e-06 Score=74.29 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=93.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
...+.|+|+.|+|||.|.+.+++.......-..++|++ ..++...+...+... ....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh--c
Confidence 34688999999999999999999876532222455654 345555555544321 1223445554 2
Q ss_pred eEEEEEeCCCCccC---hhh-hcCCCC-CCCCCeEEEEeecchhhhh--------ccCCceeeEEccCCCHHHHHHHHHH
Q 044858 252 KILIILDDIWGSLD---LEA-IGIPLA-DDNGGCKVLLTARSQDVLS--------CEMDCQQNFVVDVLNDKEAWSLFKK 318 (426)
Q Consensus 252 ~~LlVlDdv~~~~~---~~~-l~~~l~-~~~~~s~iivTtr~~~va~--------~~~~~~~~~~l~~L~~~e~~~Lf~~ 318 (426)
-=+|+|||++.... |+. +...+. ....|-+||+|+......- ......-.+++++.+.++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 35899999976522 332 111111 0124668999997653220 1122345899999999999999998
Q ss_pred hhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 319 MTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 319 ~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
.+...... --+++.+-|++.+.+..-.+..+-
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 88522211 224567777777776655554443
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.33 E-value=9e-06 Score=73.40 Aligned_cols=189 Identities=17% Similarity=0.180 Sum_probs=118.6
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEE-EEEecCCcCHHHHHHHHH--
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVI-SSRVSQTPQIKEIQREIA-- 224 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~v~~~~~~~~il~~i~-- 224 (426)
.....+.|.+..+..|.+.+.....++...+||+|.|||+-|..+....-..+.|.+.+ -.++|......-+-..+-
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~f 112 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNF 112 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCH
Confidence 45677889999999999988887788999999999999999999988776666777654 345554433221111110
Q ss_pred HHhCCCccccCcHHHHHHHHHHH-hcCCe-EEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhccCCce
Q 044858 225 EKLGLKIDQESESVRAWRLLEQL-KKETK-ILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSCEMDCQ 299 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l-~~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~~~~~ 299 (426)
.++..... ... ..-++ -++|||+++.. +.|..+...+......++.|+.+.. ..+........
T Consensus 113 akl~~~~~------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 113 AKLTVLLK------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred HHHhhccc------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 00000000 000 01123 48889999865 6788776655544555665544433 33322223345
Q ss_pred eeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 044858 300 QNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVP 349 (426)
Q Consensus 300 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 349 (426)
..+..++|.+++...-+...+..+..+-+ .+..+.|++.++|----..+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLRRAIT 229 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHH
Confidence 67899999999999888888753332222 45678899999996443333
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.2e-05 Score=81.82 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=108.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
..+..++|.++....|...+..++. +.+.++|+.|+||||+|+.+.+.......... ..++.......|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g 85 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEG 85 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 3567789999999999998887665 45689999999999999999877532111100 000000111111000
Q ss_pred hCCC---ccc--cCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEE-eecchhhhhc
Q 044858 227 LGLK---IDQ--ESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLL-TARSQDVLSC 294 (426)
Q Consensus 227 l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iiv-Ttr~~~va~~ 294 (426)
-... .+. ....+.+..+.+.+. .+++-++|||+++... ..+.+...+-.-...+.+|+ ||....+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 000 001112222332221 2345689999997542 34444433322233555555 4444444322
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch-HHHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP-IAIVPIAK 352 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~ 352 (426)
..+....+++.+++.++....+...+......- -.+....|++.++|.. .|+..+-.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 233456889999999999888887664222111 1456778889999866 44444433
No 93
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.31 E-value=1.1e-06 Score=82.67 Aligned_cols=226 Identities=22% Similarity=0.260 Sum_probs=146.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc-eEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
.+.+.++|.||+||||++-++.. ... .|. .+.++...+-.+...+.-.....++...... ......+...+. +
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~-~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG-D 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-h
Confidence 47799999999999999999988 332 365 5666666666666666666666676654321 123334455554 5
Q ss_pred CeEEEEEeCCCCcc-ChhhhcCCCCCCCCCeEEEEeecchhhhhccCCceeeEEccCCCHH-HHHHHHHHhhCCCC----
Q 044858 251 TKILIILDDIWGSL-DLEAIGIPLADDNGGCKVLLTARSQDVLSCEMDCQQNFVVDVLNDK-EAWSLFKKMTGDCI---- 324 (426)
Q Consensus 251 k~~LlVlDdv~~~~-~~~~l~~~l~~~~~~s~iivTtr~~~va~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~---- 324 (426)
+|.++|+||..+.. .-..+...+..+.+.-.|+.|+|.... ........+.+|+.. ++.++|...+....
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 89999999986542 222222233334455678888887653 233456777777755 78899887763111
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHHHHHHHH----HhhccccCCCCcchhhhhhhHHhhhcCCCCCh
Q 044858 325 ENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEWRNALRQ----LKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEE 400 (426)
Q Consensus 325 ~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~ 400 (426)
-.......+..|.++.+|.|++|...++..++....+-...++. +..- ... ...........+.+||.-|...
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~-a~~~~qtl~asl~ws~~lLtgw- 240 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARL-AVLRQQTLRASLDWSYALLTGW- 240 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-ccc-chhHHHhccchhhhhhHhhhhH-
Confidence 12233567889999999999999999999987755554443332 2111 111 1111267788999999999886
Q ss_pred hHHHHHHhhc
Q 044858 401 LRKTFLLIGY 410 (426)
Q Consensus 401 lk~cfl~~s~ 410 (426)
.+--|--++.
T Consensus 241 e~~~~~rLa~ 250 (414)
T COG3903 241 ERALFGRLAV 250 (414)
T ss_pred HHHHhcchhh
Confidence 7777766666
No 94
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.9e-05 Score=78.59 Aligned_cols=197 Identities=15% Similarity=0.108 Sum_probs=111.6
Q ss_pred CcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.+..++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+.+.......... ....+...+..+.+....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCC
Confidence 456788999999998888886653 57889999999999999999887643211100 001111222233332221
Q ss_pred CCCc---c--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhcc
Q 044858 228 GLKI---D--QESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSCE 295 (426)
Q Consensus 228 ~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~ 295 (426)
.... + .....+.+..+.+.+. .+++-++|||+++.. ...+.+...+..-...+.+|++|.+ ..+....
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1110 0 0111223333333322 245568999999755 3355554444332334555555543 3332222
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
......+.+.+++.++....+...+...... --.+....|++.++|.+..+..+.
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3345678899999999888887766432111 113457889999999886554443
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=4.6e-05 Score=77.35 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=109.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
..+..++|.+.....+..++..++. +.+.++|+.|+||||+|+.+.+.......-+ ..+++.....+.|...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNG 85 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 3567789999999999998886654 4577899999999999999987653211000 0011111111111111
Q ss_pred hCCCc---c--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEE-eecchhhhhc
Q 044858 227 LGLKI---D--QESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLL-TARSQDVLSC 294 (426)
Q Consensus 227 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iiv-Ttr~~~va~~ 294 (426)
...+. + .....+.+..+.+... .+++-++|+|+++.. ..++.+...+..-...+.+|+ ||....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 00000 0 0011222333333322 245678899999755 345555443332223444454 4444433322
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
..+....+.+.+++.++....+...+......- -.+....|++.++|.+.-+...
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 233456789999999999999888764222111 1356778888999877644433
No 96
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.29 E-value=2.6e-05 Score=75.55 Aligned_cols=176 Identities=16% Similarity=0.239 Sum_probs=99.2
Q ss_pred cCCcccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC
Q 044858 147 TQDFMHFESRKSTLKGILDALS----N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 213 (426)
Q Consensus 147 ~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 213 (426)
...+.++.|-+..+++|.+.+. . ..++-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh-
Confidence 3445667788777777666543 1 235678999999999999999999875432 2 22211
Q ss_pred cCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----hhhhcCCCC--C
Q 044858 214 PQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------D----LEAIGIPLA--D 275 (426)
Q Consensus 214 ~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~ 275 (426)
..+.... ++ .....+..++.......+++|+||+++... . +..+...+. .
T Consensus 213 ---s~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ---SEFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ---HHHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 1111111 11 011234455555555678999999986421 0 111111111 1
Q ss_pred CCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 276 DNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 276 ~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
...+..||.||....... ....-...++++..+.++-..+|..........++. ....+++.+.|+-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 234667888887654321 111234578898889998888888776532222211 1345666676653
No 97
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.28 E-value=4.7e-05 Score=74.73 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.|+|+.|+|||+|++.+++.......-..+++++. .++..++...+... ....+.+.+.+ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~--~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYRS--V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHHh--C
Confidence 46889999999999999999998765321123555543 34444555444321 12233334432 3
Q ss_pred EEEEEeCCCCccC---hh-hhcCCCCC-CCCCeEEEEeecchhhh-----h---ccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 253 ILIILDDIWGSLD---LE-AIGIPLAD-DNGGCKVLLTARSQDVL-----S---CEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 253 ~LlVlDdv~~~~~---~~-~l~~~l~~-~~~~s~iivTtr~~~va-----~---~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
-+|+|||++.... +. .+...+.. ...+..+|+||....-. . ........+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999975421 11 12211110 12345688887653211 0 11222357899999999999999998
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------hcC--CHHHHHHHHHHH
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL------KNK--SPYEWRNALRQL 369 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l------~~~--~~~~w~~~l~~l 369 (426)
+..... .--+++...|++.+.|.+-.+.-+-..| .++ +....+.++...
T Consensus 281 ~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGL-ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 853221 1125678889999998777544332222 122 667777777764
No 98
>CHL00181 cbbX CbbX; Provisional
Probab=98.27 E-value=2.5e-05 Score=72.46 Aligned_cols=133 Identities=12% Similarity=0.108 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.++|++|+||||+|+.+++.....+.-...-|+.++ ..++..... +. .. .....+++.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~~~---g~-----~~-~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQYI---GH-----TA-PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHHHh---cc-----ch-HHHHHHHHHc---cC
Confidence 357899999999999999998865432211111244443 122222211 11 00 1112223222 23
Q ss_pred EEEEEeCCCCc-----------cChhhhcCCCCCCCCCeEEEEeecchhhh-------hccCCceeeEEccCCCHHHHHH
Q 044858 253 ILIILDDIWGS-----------LDLEAIGIPLADDNGGCKVLLTARSQDVL-------SCEMDCQQNFVVDVLNDKEAWS 314 (426)
Q Consensus 253 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~iivTtr~~~va-------~~~~~~~~~~~l~~L~~~e~~~ 314 (426)
-+|+||++... +....+...+.....+.+||+++...... .........+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 11122333333334567777777643321 0112234589999999999999
Q ss_pred HHHHhhC
Q 044858 315 LFKKMTG 321 (426)
Q Consensus 315 Lf~~~~~ 321 (426)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9988874
No 99
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.25 E-value=5.3e-05 Score=75.33 Aligned_cols=202 Identities=16% Similarity=0.156 Sum_probs=114.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.|+|+.|+|||+|++.+.+.......-..+++++. .++..++...+... ....+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 46889999999999999999998765422223455543 23344444443211 1123334443 24
Q ss_pred EEEEEeCCCCccC---h-hhhcCCCCC-CCCCeEEEEeecchhhh--------hccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 253 ILIILDDIWGSLD---L-EAIGIPLAD-DNGGCKVLLTARSQDVL--------SCEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 253 ~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
-+|+|||++.... + +.+...+.. ...|..||+||....-. .........+++++.+.++-..++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 5899999975421 1 122221110 11245688887654211 112223457999999999999999998
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------hcC--CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHh
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL------KNK--SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQL 391 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l------~~~--~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 391 (426)
+.... ..--+++..-|++.++|..-.+.-+-..| .++ +....+.+++.+........ +.+.+.....-
T Consensus 293 ~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~---~~~~i~~~v~~ 368 (450)
T PRK00149 293 AEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKI---TIENIQKVVAE 368 (450)
T ss_pred HHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCC---CHHHHHHHHHH
Confidence 85321 11224678889999998877544332222 122 77777777776532111111 23555555554
Q ss_pred hhc
Q 044858 392 SYN 394 (426)
Q Consensus 392 sy~ 394 (426)
.|.
T Consensus 369 ~~~ 371 (450)
T PRK00149 369 YYN 371 (450)
T ss_pred HcC
Confidence 443
No 100
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.25 E-value=2.7e-05 Score=72.34 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=73.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeE
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKI 253 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 253 (426)
-+.++|++|+|||++|+.+.+...........-++.++. .++...+ .+. +. .....+++.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----TA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----ch-HHHHHHHHHc---cCc
Confidence 588999999999999988877654322222112444432 2222211 111 11 1122233332 346
Q ss_pred EEEEeCCCCc------cC-----hhhhcCCCCCCCCCeEEEEeecchhhhh-------ccCCceeeEEccCCCHHHHHHH
Q 044858 254 LIILDDIWGS------LD-----LEAIGIPLADDNGGCKVLLTARSQDVLS-------CEMDCQQNFVVDVLNDKEAWSL 315 (426)
Q Consensus 254 LlVlDdv~~~------~~-----~~~l~~~l~~~~~~s~iivTtr~~~va~-------~~~~~~~~~~l~~L~~~e~~~L 315 (426)
+|+||++... .. ...+...+.....+.+||+++....... ........+++++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 9999999632 11 2233333333345667777765432210 0111246799999999999999
Q ss_pred HHHhhC
Q 044858 316 FKKMTG 321 (426)
Q Consensus 316 f~~~~~ 321 (426)
+.+.+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988874
No 101
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.25 E-value=1.6e-05 Score=78.89 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=90.8
Q ss_pred CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC---ccceEEEEEec
Q 044858 148 QDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFEKVISSRVS 211 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~v~ 211 (426)
..+.++.|.+..++++.+.+. -..++-+.++|++|+|||++|+.+++.....- .+....++.+.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 345667788888888777653 12345689999999999999999999865321 01223344443
Q ss_pred CCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHH----hcCCeEEEEEeCCCCcc---------Ch-----hhhcCCC
Q 044858 212 QTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQL----KKETKILIILDDIWGSL---------DL-----EAIGIPL 273 (426)
Q Consensus 212 ~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~---------~~-----~~l~~~l 273 (426)
.. +++... ... ....+..+++.. ..+++++|+||+++... +. ..+...+
T Consensus 259 ~~----eLl~ky--------vGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GP----ELLNKY--------VGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ch----hhcccc--------cch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 21 111110 000 011122222222 23578999999997431 11 1222222
Q ss_pred CC--CCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCC
Q 044858 274 AD--DNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGD 322 (426)
Q Consensus 274 ~~--~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 322 (426)
.. ...+..||.||....... +...-...|++++.+.++..++|..++..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 123445566665443321 11123457999999999999999998753
No 102
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00012 Score=64.66 Aligned_cols=188 Identities=16% Similarity=0.142 Sum_probs=109.3
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe-cCCcCHHHHHHHHHHHhCCCcccc--Cc
Q 044858 160 LKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV-SQTPQIKEIQREIAEKLGLKIDQE--SE 236 (426)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v-~~~~~~~~il~~i~~~l~~~~~~~--~~ 236 (426)
+..+...+. .+.+++.++|.-|+|||.+.+.+.......+ ++-+.+ .+..+...+...|+..+..+.... ..
T Consensus 40 l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~----~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~ 114 (269)
T COG3267 40 LLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNEDQ----VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAV 114 (269)
T ss_pred HHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCCCc----eEEEEecCcchhHHHHHHHHHHHhccCccchhHHH
Confidence 333333333 3456899999999999999995555444321 122333 345577788888888877622111 11
Q ss_pred HH-HHHHHHHHHhcCCe-EEEEEeCCCCc--cChhhhcC---CCCCCCCCeEEEEeecchh-------hhhccCCceee-
Q 044858 237 SV-RAWRLLEQLKKETK-ILIILDDIWGS--LDLEAIGI---PLADDNGGCKVLLTARSQD-------VLSCEMDCQQN- 301 (426)
Q Consensus 237 ~~-~~~~l~~~l~~~k~-~LlVlDdv~~~--~~~~~l~~---~l~~~~~~s~iivTtr~~~-------va~~~~~~~~~- 301 (426)
.. ....+.....+++| ..+++||..+. ...+.++. .-.....--+|+.....+- +..........
T Consensus 115 ~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir 194 (269)
T COG3267 115 LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIR 194 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEE
Confidence 11 22234444456777 99999999765 22333221 1111111123444333221 00111122334
Q ss_pred EEccCCCHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHcCCchHHHHHHHH
Q 044858 302 FVVDVLNDKEAWSLFKKMTGDCIENG--ELKSVVTEVVKECAGLPIAIVPIAK 352 (426)
Q Consensus 302 ~~l~~L~~~e~~~Lf~~~~~~~~~~~--~~~~~~~~i~~~c~GlPlai~~~~~ 352 (426)
|++.|++.++...++...+.....++ --.+....|.....|.|.+|..++.
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999998886332222 2245678899999999999988764
No 103
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.22 E-value=4.9e-05 Score=74.32 Aligned_cols=200 Identities=19% Similarity=0.268 Sum_probs=109.6
Q ss_pred CCcccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALS----N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
..+.++.|.+..++++.+.+. . ..+.-+.++|++|+|||++|+.+++..... | +.+...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~s- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVGS- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEecc-
Confidence 345567788888877776653 1 234568899999999999999999976532 3 222111
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------C------hhhhcCCCC--CC
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL----------D------LEAIGIPLA--DD 276 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~~ 276 (426)
++.... .+ .....+..+++......+++|+||+++... + +..+...+. ..
T Consensus 252 ---eL~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ---ELIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---hhhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 111110 00 011234445555555678999999975321 0 011111111 12
Q ss_pred CCCeEEEEeecchhhhhc----cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH----HHH
Q 044858 277 NGGCKVLLTARSQDVLSC----EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI----AIV 348 (426)
Q Consensus 277 ~~~s~iivTtr~~~va~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl----ai~ 348 (426)
..+..||.||........ ...-...+++.+.+.++-.++|..++......++. ....++..+.|+-- ++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCCHHHHHHHH
Confidence 335678888876543311 12234688999999999999999877533222211 12345555555432 222
Q ss_pred HHHHHhh---cC---CHHHHHHHHHHH
Q 044858 349 PIAKALK---NK---SPYEWRNALRQL 369 (426)
Q Consensus 349 ~~~~~l~---~~---~~~~w~~~l~~l 369 (426)
.-|+.++ +. +.+++..+.+..
T Consensus 398 ~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 398 TEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 2233332 21 566666666554
No 104
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.22 E-value=8.7e-05 Score=69.11 Aligned_cols=196 Identities=15% Similarity=0.161 Sum_probs=117.8
Q ss_pred cccchHHHHHHHHHHhccCC---ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC
Q 044858 152 HFESRKSTLKGILDALSNRN---FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 228 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~ 228 (426)
.|.+|+.++..+...+.+.. +..|.|.|..|.|||.+.+++.+.... ..+|+++-..++...++..|+.+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhc
Confidence 46789999999998887443 345689999999999999999988743 2579999999999999999999985
Q ss_pred -CCccccC---cHHHHHHHHHHHh-------cCCeEEEEEeCCCCccChhhhcCC----C--CCCCCCeEEEEeecchhh
Q 044858 229 -LKIDQES---ESVRAWRLLEQLK-------KETKILIILDDIWGSLDLEAIGIP----L--ADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 229 -~~~~~~~---~~~~~~~l~~~l~-------~~k~~LlVlDdv~~~~~~~~l~~~----l--~~~~~~s~iivTtr~~~v 291 (426)
.+.+... +.+........+. .++.++||||+++...+.+.+..+ + .-+.+.. .|+++-....
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e 160 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCE 160 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccccH
Confidence 2222211 1122222222221 246899999999866443332100 0 0112233 3333333222
Q ss_pred h--hccCCc--eeeEEccCCCHHHHHHHHHHhhCCCCC----CCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 292 L--SCEMDC--QQNFVVDVLNDKEAWSLFKKMTGDCIE----NGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 292 a--~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~----~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
. ...+++ ..++..+.-+.+|...++.+.-.+... ..-+.-+..-....|+ -|-.+..+....
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 1 111233 346777888999999998765432111 0111223445566777 555666555443
No 105
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=7.6e-05 Score=70.14 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=111.2
Q ss_pred cccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------ccceEEEEEecCCcC
Q 044858 150 FMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENN-------------LFEKVISSRVSQTPQ 215 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------~f~~~~wv~v~~~~~ 215 (426)
+..++|.+...+.+...+..++. +...++|+.|+||+++|..+.+..-... ..+...|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 34678999999999998887764 7899999999999999998877643211 111223332110000
Q ss_pred HHHHHHHHHHHhCC--CccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeec
Q 044858 216 IKEIQREIAEKLGL--KIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTAR 287 (426)
Q Consensus 216 ~~~il~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr 287 (426)
-..+-..-+...+. .....-..+.+..+.+.+. .+.+-++|+|+++.. ...+.+...+-.-.+..-|++|+.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 00000001111110 0001111223444555443 256679999998754 233444333321112333444444
Q ss_pred chhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 044858 288 SQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAK 352 (426)
Q Consensus 288 ~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 352 (426)
.+.+.....+....+++.++++++..+.+.+...... .......++..++|.|..+.....
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHHHH
Confidence 4444333345568999999999999999988643211 111135789999999976655433
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.19 E-value=4e-05 Score=81.97 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCcc----ceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLF----EKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~il~~i~ 224 (426)
...+++||+++++.++..|.......+.++|++|+|||++|+.+.+........ ...+|.. ++..++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a--- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA--- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh---
Confidence 456799999999999999886665667799999999999999998876432111 2222221 1111110
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhc-CCeEEEEEeCCCCccC---------hhhhcCCCCCCCCCeEEEEeecchhh---
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKK-ETKILIILDDIWGSLD---------LEAIGIPLADDNGGCKVLLTARSQDV--- 291 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---------~~~l~~~l~~~~~~s~iivTtr~~~v--- 291 (426)
+.... ......+..+++.+.. +++.+|++|+++.... ...+..+... ...-++|-+|..+..
T Consensus 243 ---~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 243 ---GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRKY 317 (852)
T ss_pred ---cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHHH
Confidence 00000 1112234455555532 4689999999974421 1122222222 223455555544422
Q ss_pred -h--hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 292 -L--SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 292 -a--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
. .........+.++..+.++...++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1112344678899899999999987654
No 107
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.16 E-value=5.1e-05 Score=76.42 Aligned_cols=201 Identities=21% Similarity=0.245 Sum_probs=108.2
Q ss_pred CCcccccchHHHHHHHH---HHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGIL---DALSN---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~---~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
..+.++.|-+..++++. .++.. ..++-+.++|++|+|||+||+.+.+..... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 34566777766554444 33321 224468899999999999999998875432 222221
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------Chh----hhcCCCC--CCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------DLE----AIGIPLA--DDN 277 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~~----~l~~~l~--~~~ 277 (426)
.++.... .+ .....+..+++......+++|+|||++... .+. .+...+. ...
T Consensus 122 -~~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111111 01 011233445555555568999999996431 011 1111111 122
Q ss_pred CCeEEEEeecchhhh----hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 044858 278 GGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL-PIAIVPIAK 352 (426)
Q Consensus 278 ~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~~ 352 (426)
.+..||.||...... .....-...++++..+.++-.++|...+......++ .....+++.+.|. |--|..+..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCCHHHHHHHHH
Confidence 345566666554321 111223467889988999999999887754322222 1245788888874 344444432
Q ss_pred ---Hh--h-cC---CHHHHHHHHHHHh
Q 044858 353 ---AL--K-NK---SPYEWRNALRQLK 370 (426)
Q Consensus 353 ---~l--~-~~---~~~~w~~~l~~l~ 370 (426)
.. + ++ +...++.+++...
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 11 1 22 6666766666543
No 108
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.15 E-value=0.00015 Score=64.36 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=41.1
Q ss_pred CCcccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 044858 148 QDFMHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENN 200 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 200 (426)
.....++|-+.+.+.|++.-. ......+.++|..|+|||+|++.+.+....++
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 456678898888887776543 33445688999999999999999999887653
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.12 E-value=5e-05 Score=80.98 Aligned_cols=158 Identities=14% Similarity=0.210 Sum_probs=90.3
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceE-EEEEecCCcCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKV-ISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~-~wv~v~~~~~~~~il~~i 223 (426)
...+++||+.+++.++..|.......+.++|++|+|||+||+.+......... .... +++.++. +..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a-- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA-- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh--
Confidence 45679999999999999988666667789999999999999999987643211 1222 2222221 110
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHh-cCCeEEEEEeCCCCcc---------ChhhhcCCCCCCCCCeEEEEeecchhh--
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLK-KETKILIILDDIWGSL---------DLEAIGIPLADDNGGCKVLLTARSQDV-- 291 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~s~iivTtr~~~v-- 291 (426)
+.. ........+..+++.+. .+++.+|++|+++... +-..+..+... ...-++|-+|..+..
T Consensus 248 ----g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ----GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 321 (857)
T ss_pred ----ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHHH
Confidence 000 00111223444444442 3568999999997542 12223223222 223456655554432
Q ss_pred --h--hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 292 --L--SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 292 --a--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
. .........+.+..-+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 0 1111233456666668888888887654
No 110
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11 E-value=2.7e-05 Score=75.32 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=72.7
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCC
Q 044858 150 FMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGL 229 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~ 229 (426)
...++..+..++.+...+... +.+.++|++|+|||++|+.+++.......|+.+.||.+++..+..+++..+.-. +.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 344667788899999888754 458889999999999999999887665668888999999988877766433110 00
Q ss_pred CccccCcHHHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 044858 230 KIDQESESVRAWRLLEQLK--KETKILIILDDIWGS 263 (426)
Q Consensus 230 ~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 263 (426)
..... . ....++..... .+++++||||++...
T Consensus 251 gy~~~-~-G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFRRK-D-GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeEec-C-chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000 0 11112222221 246899999999644
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00014 Score=68.77 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------ccceEEEEEecCCcCHHHHHHHHHHHhCCCc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFEKVISSRVSQTPQIKEIQREIAEKLGLKI 231 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~ 231 (426)
.+.+.++|+.|+|||++|..+....--.. |.| ..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC------------------
Confidence 45688999999999999999887654221 111 112211000
Q ss_pred cccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecch-hhhhccCCceeeEEc
Q 044858 232 DQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQ-DVLSCEMDCQQNFVV 304 (426)
Q Consensus 232 ~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~va~~~~~~~~~~~l 304 (426)
...-..+.+..+.+.+. .+++-++|||+++.. ...+.+...+..-..++.+|+||.+. .+.....+....+.+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 00011123333333332 234456678999754 33444443332223466777777665 333323445578999
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
.+++.+++.+.+....... ..+.+..++..++|.|+....+
T Consensus 163 ~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988754211 1234567789999999855443
No 112
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.10 E-value=1.2e-05 Score=65.46 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=41.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC-eE
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET-KI 253 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 253 (426)
|.|+|++|+|||++|+.+.+..... .+.++.+.-.+. ........+..+++...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999987522 233433221100 11111223334444443334 89
Q ss_pred EEEEeCCCCc
Q 044858 254 LIILDDIWGS 263 (426)
Q Consensus 254 LlVlDdv~~~ 263 (426)
+|+|||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999644
No 113
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.10 E-value=1.8e-05 Score=64.74 Aligned_cols=91 Identities=26% Similarity=0.184 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.|+|++|+||||+++.+........ ..++++..+........... ...................+.......+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999998876532 23455554433322211111 11111111122222334445555544345
Q ss_pred EEEEEeCCCCccCh
Q 044858 253 ILIILDDIWGSLDL 266 (426)
Q Consensus 253 ~LlVlDdv~~~~~~ 266 (426)
.++++|++......
T Consensus 80 ~viiiDei~~~~~~ 93 (148)
T smart00382 80 DVLILDEITSLLDA 93 (148)
T ss_pred CEEEEECCcccCCH
Confidence 89999999876443
No 114
>CHL00176 ftsH cell division protein; Validated
Probab=98.10 E-value=0.00016 Score=74.31 Aligned_cols=199 Identities=16% Similarity=0.219 Sum_probs=108.6
Q ss_pred CcccccchHH---HHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 149 DFMHFESRKS---TLKGILDALSNR---------NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 149 ~~~~~~gR~~---~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
.+.++.|.++ ++.+++..+.++ .++-+.++|++|+|||+||+.++...... ++.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccH----
Confidence 3445566554 444455554422 24568999999999999999998865432 233321
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----hhhhcCCCC--CCCC
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------D----LEAIGIPLA--DDNG 278 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~ 278 (426)
.++.... .+ .....+..+++......+++|+|||++... . +..+...+. ....
T Consensus 250 s~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 250 SEFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 1111100 00 011234445555556678999999996431 1 112221111 1234
Q ss_pred CeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHHHH-
Q 044858 279 GCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAG-LPIAIVPIAK- 352 (426)
Q Consensus 279 ~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~~~- 352 (426)
+..||.||....... ....-...+.+...+.++-.++++.++......+ ......+++.+.| .+--|..+..
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGFSGADLANLLNE 398 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 556666776543221 1112346788888899999999988876422222 2345678888887 3333333322
Q ss_pred --Hhh---cC---CHHHHHHHHHHH
Q 044858 353 --ALK---NK---SPYEWRNALRQL 369 (426)
Q Consensus 353 --~l~---~~---~~~~w~~~l~~l 369 (426)
+.+ ++ +.++.+.+++..
T Consensus 399 Aal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 399 AAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 111 21 566676666654
No 115
>PRK06620 hypothetical protein; Validated
Probab=98.08 E-value=2.1e-05 Score=69.80 Aligned_cols=136 Identities=15% Similarity=0.045 Sum_probs=78.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
+.+.|+|++|+|||+|++.+.+.... .++. ..+.. . +... ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~-------------------~--------~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN-------------------E--------EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc-------------------h--------hHHh--cC
Confidence 56899999999999999987765421 1111 00000 0 0111 23
Q ss_pred EEEEEeCCCCccChhhhcCCCC-CCCCCeEEEEeecchhhh------hccCCceeeEEccCCCHHHHHHHHHHhhCCCCC
Q 044858 253 ILIILDDIWGSLDLEAIGIPLA-DDNGGCKVLLTARSQDVL------SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIE 325 (426)
Q Consensus 253 ~LlVlDdv~~~~~~~~l~~~l~-~~~~~s~iivTtr~~~va------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 325 (426)
-+|++||++...+ ..+...+. -...|..||+|++..... .......-+++++++++++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~- 164 (214)
T PRK06620 87 NAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS- 164 (214)
T ss_pred CEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-
Confidence 5788999974321 11211110 013466899998865432 01122334899999999998888887764221
Q ss_pred CCchHHHHHHHHHHcCCchHHHH
Q 044858 326 NGELKSVVTEVVKECAGLPIAIV 348 (426)
Q Consensus 326 ~~~~~~~~~~i~~~c~GlPlai~ 348 (426)
-.--+++.+-|++.+.|.--.+.
T Consensus 165 l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCCHHHHHHHHHHccCCHHHHH
Confidence 11124567778887777654443
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.08 E-value=1.5e-05 Score=83.04 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=94.0
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC-c---cceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENN-L---FEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
...+++||+.+++.+++.|.......+.++|++|+|||++|+.+++.....+ . .++.+|.. +...++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~lla--- 255 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLA--- 255 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhc---
Confidence 3467899999999999988865555667999999999999999987653321 1 13344421 1111110
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--------c--ChhhhcCCCCCCCCCeEEEEeecchhhh--
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--------L--DLEAIGIPLADDNGGCKVLLTARSQDVL-- 292 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--------~--~~~~l~~~l~~~~~~s~iivTtr~~~va-- 292 (426)
+.. ........+..+++.+.+..+.+|+||+++.. . +...+..++.. ...-++|-+|..+...
T Consensus 256 ---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 ---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred ---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHH
Confidence 000 01112233445556565556789999999743 1 11112222222 2234555555543321
Q ss_pred ----hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 293 ----SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 293 ----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
.........+.+++.+.++..+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1112345689999999999999998654
No 117
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.05 E-value=9.2e-05 Score=64.32 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=67.3
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 228 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~ 228 (426)
...+++|.++.++.+--...+++.+.+.|.||+|+||||-+..+.+..-....-+.+.-.++|....+.-+-..|-.-.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA- 103 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA- 103 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH-
Confidence 3567899999888877777788899999999999999999988888765433333455555555554444433332100
Q ss_pred CCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 229 LKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
+-.-.+..++.-+++||+.++.
T Consensus 104 -------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 104 -------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred -------------HhhccCCCCceeEEEeeccchh
Confidence 0001112367779999999876
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.0003 Score=70.98 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+... ....+.+.+. +.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 35899999999999999999998754211223455543 44454554433211 1122333333 23
Q ss_pred EEEEEeCCCCc---cChhh-hcCCCCC-CCCCeEEEEeecchhhh--------hccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 253 ILIILDDIWGS---LDLEA-IGIPLAD-DNGGCKVLLTARSQDVL--------SCEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 253 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
=+|+|||+... ..|.. +...+.. ...+..|||||....-. .......-++.|++.+.+.-..++.+.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 58999999754 22322 2222211 12355688888764211 112334568899999999999999988
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------hcC--CHHHHHHHHHHHh
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL------KNK--SPYEWRNALRQLK 370 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l------~~~--~~~~w~~~l~~l~ 370 (426)
+...... --.++..-|++.+.+..-.|.-+...| .++ +...-+.+++.+.
T Consensus 459 a~~r~l~-l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~ 516 (617)
T PRK14086 459 AVQEQLN-APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHhcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 8533211 125677788888777655444333222 122 5666666776553
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=9.6e-05 Score=72.96 Aligned_cols=181 Identities=12% Similarity=0.138 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
.-+.|+|++|+|||+|++.+++.......-..++|++. .++..++...+... ......+.+. .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hcC
Confidence 45899999999999999999998764321124556643 45566665554321 1112333332 235
Q ss_pred EEEEEeCCCCcc---Ch-hhhcCCCCC-CCCCeEEEEeecchh-h----hhc---cCCceeeEEccCCCHHHHHHHHHHh
Q 044858 253 ILIILDDIWGSL---DL-EAIGIPLAD-DNGGCKVLLTARSQD-V----LSC---EMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 253 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~s~iivTtr~~~-v----a~~---~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
-+|+|||++... .+ ..+...+.. ...|..||+||.... - ... .......+.+++.+.+.-..++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 589999997441 11 122221110 123456888875321 1 111 1223357899999999999999988
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------hcC--CHHHHHHHHHHH
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL------KNK--SPYEWRNALRQL 369 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l------~~~--~~~~w~~~l~~l 369 (426)
+..... .--+++..-|++.+.|..-.+.-+-..| .++ +...-+.++..+
T Consensus 276 ~~~~~~-~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 276 LEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHhcCC-CCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 753211 1125678889998888655444333222 122 667777777665
No 120
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00046 Score=63.94 Aligned_cols=201 Identities=18% Similarity=0.250 Sum_probs=119.0
Q ss_pred ccCCcccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 146 STQDFMHFESRKSTLKGILDALS----N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 146 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
|...+.++-|-++.+++|.+... + ..++=|.++|++|.|||-||+.|++..... |+.+..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEecc
Confidence 34456667788888888777654 1 346678899999999999999999987654 444432
Q ss_pred CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----hhhhcCCCC--
Q 044858 213 TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------D----LEAIGIPLA-- 274 (426)
Q Consensus 213 ~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~-- 274 (426)
+ ++.+..+ | .....+..+++......+++|++|.++... + .-.+...+-
T Consensus 219 S----ElVqKYi---G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 S----ELVQKYI---G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred H----HHHHHHh---c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 2 2222221 1 113456677777777889999999986330 0 111111221
Q ss_pred CCCCCeEEEEeecchhhh----hccCCceeeEEccCCCHHHHHHHHHHhhCCC--CCCCchHHHHHHHHHHcCCch----
Q 044858 275 DDNGGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDC--IENGELKSVVTEVVKECAGLP---- 344 (426)
Q Consensus 275 ~~~~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlP---- 344 (426)
+.....+||..|...++. -+...-...|+++.=+.+.-.++|+-+.... ...-++ +.|++.|.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdl 361 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADL 361 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHH
Confidence 224567899888776554 1122334567777444445555666555432 223343 34666666653
Q ss_pred HHHHHHHHHhh---cC---CHHHHHHHHHHHh
Q 044858 345 IAIVPIAKALK---NK---SPYEWRNALRQLK 370 (426)
Q Consensus 345 lai~~~~~~l~---~~---~~~~w~~~l~~l~ 370 (426)
.|+-+=|++++ .+ +.+++..+.+...
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 34555566665 22 6667766666544
No 121
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00019 Score=64.35 Aligned_cols=231 Identities=12% Similarity=0.111 Sum_probs=132.3
Q ss_pred CCcccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALS-----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.....|+|.++..+++-=.+. +..+--+.++|++|.||||||..+.+...+. + -++.++..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~l-------- 88 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPAL-------- 88 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----Eecccccc--------
Confidence 456789999888877665554 3456678999999999999999999998764 1 11111110
Q ss_pred HHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-C--------hhhhcCC-CCCCCCCeE-----------
Q 044858 223 IAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-D--------LEAIGIP-LADDNGGCK----------- 281 (426)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-~--------~~~l~~~-l~~~~~~s~----------- 281 (426)
.....+..++..+. ..=++++|+++... . .+++..- ....++++|
T Consensus 89 ------------eK~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 89 ------------EKPGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ------------cChhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 01112223333333 23467778876441 1 1111100 011122222
Q ss_pred EEEeecchhhhh-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhc----
Q 044858 282 VLLTARSQDVLS-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKN---- 356 (426)
Q Consensus 282 iivTtr~~~va~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~---- 356 (426)
|=-|||.-.+.. ....-..+.+++--+.+|-.++..+.+..-. -+--++.+.+|++...|-|--..-+.+..+.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQV 233 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 335888765432 1222335778999999999999998874211 1112456889999999999877666655541
Q ss_pred --C---CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHHHhhc
Q 044858 357 --K---SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFLLIGY 410 (426)
Q Consensus 357 --~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~ 410 (426)
. +..--..+++.|.-... .+...+ ..++.++.-.|+.=|-- ++..-..++.
T Consensus 234 ~~~~~I~~~ia~~aL~~L~Vd~~-GLd~~D-~k~L~~li~~f~GgPVG-l~tia~~lge 289 (332)
T COG2255 234 KGDGDIDRDIADKALKMLDVDEL-GLDEID-RKYLRALIEQFGGGPVG-LDTIAAALGE 289 (332)
T ss_pred hcCCcccHHHHHHHHHHhCcccc-cccHHH-HHHHHHHHHHhCCCCcc-HHHHHHHhcC
Confidence 1 33333445554432111 111123 56677777777777765 6665555554
No 122
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=0.00011 Score=75.08 Aligned_cols=201 Identities=11% Similarity=0.055 Sum_probs=104.1
Q ss_pred cCCcccccchHHHHHHHHHHhccC-----CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC---CcCHHH
Q 044858 147 TQDFMHFESRKSTLKGILDALSNR-----NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ---TPQIKE 218 (426)
Q Consensus 147 ~~~~~~~~gR~~~~~~l~~~l~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~ 218 (426)
|.....+++.++.+.++..++... ...++.|+|++|+||||+++.+...... +..-|.+-.. ..+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~----~~~Ew~npv~~~~~~~~~~ 155 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI----QVQEWSNPTLPDFQKNDHK 155 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh----HHHHHhhhhhhcccccccc
Confidence 345677889999999888888632 3356999999999999999999876542 2222321100 000011
Q ss_pred HHHHHHHHhCCCccccCcHHHHHHHHHHH----------hcCCeEEEEEeCCCCcc-----ChhhhcC-CCCCCCCCeEE
Q 044858 219 IQREIAEKLGLKIDQESESVRAWRLLEQL----------KKETKILIILDDIWGSL-----DLEAIGI-PLADDNGGCKV 282 (426)
Q Consensus 219 il~~i~~~l~~~~~~~~~~~~~~~l~~~l----------~~~k~~LlVlDdv~~~~-----~~~~l~~-~l~~~~~~s~i 282 (426)
+...+..++.... +.......+.... ..+++.+|+||++.... .+..+.. .+.....-.-|
T Consensus 156 ~~~s~~~~~~~~~---s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI 232 (637)
T TIGR00602 156 VTLSLESCFSNFQ---SQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLV 232 (637)
T ss_pred cchhhhhcccccc---chHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEE
Confidence 1112222221111 1111111111111 12467899999995431 2333333 22222222334
Q ss_pred EEeecchh----------hh-----hcc--CCceeeEEccCCCHHHHHHHHHHhhCCCC---CCC---chHHHHHHHHHH
Q 044858 283 LLTARSQD----------VL-----SCE--MDCQQNFVVDVLNDKEAWSLFKKMTGDCI---ENG---ELKSVVTEVVKE 339 (426)
Q Consensus 283 ivTtr~~~----------va-----~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~---~~~---~~~~~~~~i~~~ 339 (426)
++||-+.. .+ ... ......|.+.|++..+....+.+.+.... ... .-.+....|+..
T Consensus 233 ~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~ 312 (637)
T TIGR00602 233 FIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG 312 (637)
T ss_pred EEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh
Confidence 44552211 00 001 12345799999999998888877764211 011 013567778888
Q ss_pred cCCchHHHHHHHHHh
Q 044858 340 CAGLPIAIVPIAKAL 354 (426)
Q Consensus 340 c~GlPlai~~~~~~l 354 (426)
++|---.+.....++
T Consensus 313 s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 313 CSGDIRSAINSLQFS 327 (637)
T ss_pred CCChHHHHHHHHHHH
Confidence 888655554444444
No 123
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.91 E-value=0.00019 Score=71.27 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHHh---c-------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHH
Q 044858 149 DFMHFESRKSTLKGILDAL---S-------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKE 218 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 218 (426)
.+.++.|.+..++.+.... . -..++-|.++|++|+|||.+|+.+.+..... | +-+..+ .
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~------~ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVG------K 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhH------H
Confidence 3445667665555444321 1 1235678999999999999999999876532 2 122211 1
Q ss_pred HHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------h----hhhcCCCCCCCCCeEEEE
Q 044858 219 IQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD----------L----EAIGIPLADDNGGCKVLL 284 (426)
Q Consensus 219 il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------~----~~l~~~l~~~~~~s~iiv 284 (426)
+.. ..-.. ....+.++++......+++|+||+++.... - ..+...+.....+.-||.
T Consensus 295 l~~--------~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 LFG--------GIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred hcc--------cccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 110 00111 122344455544456799999999964210 0 011111112223444555
Q ss_pred eecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 285 TARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 285 Ttr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
||....... +...-...+.++.-+.++-.++|..++........-......+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 665543211 112234578888888899999998887532211100112456677776653
No 124
>PRK10536 hypothetical protein; Provisional
Probab=97.90 E-value=0.00018 Score=64.58 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEE
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVI 206 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~ 206 (426)
+...+.+|......++.++.+. .++.+.|++|+|||+||..+..+.-..+.|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3445667888888888887764 4899999999999999999887643223355433
No 125
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00031 Score=69.29 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=63.4
Q ss_pred CcccccchHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 149 DFMHFESRKSTLKGILDALS---N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
.+.++-|-+..+.++.+.+. . ..++=|.+||++|+|||.||+.+.+...+. ++.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch---
Confidence 35567788887777666553 1 235568899999999999999999998865 3333322
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWG 262 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 262 (426)
+|...+. . .....+..+++...+.-+|+++||+++-
T Consensus 258 -----eivSGvS----G-ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 -----EIVSGVS----G-ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -----hhhcccC----c-ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 1222211 1 1234566777777777899999999963
No 126
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00068 Score=63.62 Aligned_cols=173 Identities=13% Similarity=0.122 Sum_probs=96.1
Q ss_pred HHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccc----------------eEEEEEecCCcCHHHHHH
Q 044858 159 TLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----------------KVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 159 ~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----------------~~~wv~v~~~~~~~~il~ 221 (426)
..+.+...+..++. ..+.++|+.|+||+++|..+.+..-...... -..|+.......
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------ 85 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------ 85 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------
Confidence 34556666666554 4688999999999999999887653221111 111221000000
Q ss_pred HHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecc-hhhhhc
Q 044858 222 EIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARS-QDVLSC 294 (426)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~-~~va~~ 294 (426)
+......-..+.+..+.+.+. .+++-++|||+++... .-+.+...+-.-..++.+|++|.+ ..+...
T Consensus 86 ------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 86 ------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred ------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchH
Confidence 000000001223333333332 2456799999997542 223333333222346666666665 444333
Q ss_pred cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 295 EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 295 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
..+....+.+.+++.+++.+.+... + . + ...+..++..++|.|+....+
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~~-~--~-~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLAQ-G--V-S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHHc-C--C-C---hHHHHHHHHHcCCCHHHHHHH
Confidence 3445678999999999999888753 1 1 1 223667899999999866544
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00014 Score=71.78 Aligned_cols=189 Identities=17% Similarity=0.189 Sum_probs=113.3
Q ss_pred CcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.+..++|.+.....|...+..++. ......|+.|+||||+|+.+....--.+ + ....++......+.|...-
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGS 86 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCC
Confidence 566789999999999988886653 4567899999999999999987653221 0 1112222222223332220
Q ss_pred CCC---cc--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCC--ccChhhhcCCCCCCCCCeEEEE-eecchhhhhcc
Q 044858 228 GLK---ID--QESESVRAWRLLEQLK----KETKILIILDDIWG--SLDLEAIGIPLADDNGGCKVLL-TARSQDVLSCE 295 (426)
Q Consensus 228 ~~~---~~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~s~iiv-Ttr~~~va~~~ 295 (426)
..+ .+ .....+.+..+.+... .++.=+.++|+|+- ...|+.+...+-.--.....|+ ||-...+....
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000 01 1112334445555543 35556899999974 4667776655533333455444 55555554445
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI 345 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 345 (426)
.+..+.|.++.++.++-...+...+....-.-+ .+...-|.+..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChh
Confidence 566789999999999999988888753322222 3445566666666433
No 128
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0024 Score=59.88 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=94.4
Q ss_pred HHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CccceEEEEEecCCcCHHHH
Q 044858 160 LKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKEN-------------------NLFEKVISSRVSQTPQIKEI 219 (426)
Q Consensus 160 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~v~~~~~~~~i 219 (426)
...+...+..++ +..+.++|+.|+||+++|..+....--. .|.| ..|+.-...
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~------ 84 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE------ 84 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC------
Confidence 345555555555 4578999999999999999987654321 1112 112211000
Q ss_pred HHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhh
Q 044858 220 QREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVL 292 (426)
Q Consensus 220 l~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va 292 (426)
...-..+.+..+.+.+. .+++=++|+|+++.. ...+.+...+-.-..++.+|++|.+ ..+.
T Consensus 85 ------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 85 ------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred ------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 00001122233333331 245568899999754 3444444444333345666666555 4444
Q ss_pred hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 293 SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
....+....+.+.++++++..+.+...- . + ....+++.++|.|+....+
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c----hHHHHHHHcCCCHHHHHHH
Confidence 3344556789999999999999887531 1 1 1356789999999977554
No 129
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00068 Score=64.45 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=85.1
Q ss_pred ccc-hHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------ccceEEEEEe
Q 044858 153 FES-RKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFEKVISSRV 210 (426)
Q Consensus 153 ~~g-R~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v 210 (426)
++| .+...+.+...+..++. +...++|+.|+||||+|..+.+..-... |.|..+....
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 445 56667777777766654 4668999999999999999977653211 1121111100
Q ss_pred cCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEE
Q 044858 211 SQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLL 284 (426)
Q Consensus 211 ~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iiv 284 (426)
+... ..+.+..+.+.+. .+.+-++|+|+++... ..+.+...+..-..++.+|+
T Consensus 87 ~~~i---------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 87 GQSI---------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred cccC---------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 1111 1122333333332 2445689999986542 33444444433334666777
Q ss_pred eecch-hhhhccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 285 TARSQ-DVLSCEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 285 Ttr~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
+|.+. .+.....+....+++.++++++..+.+.+.
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 76553 333323445678999999999998888653
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.80 E-value=0.00058 Score=62.73 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHH
Q 044858 158 STLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ 220 (426)
Q Consensus 158 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il 220 (426)
+.++.+..++..+ .-+.+.|++|+|||+||+.+.+.... ..+.++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHh
Confidence 3445555555544 34679999999999999999874421 23455555555555554
No 131
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0015 Score=61.36 Aligned_cols=175 Identities=10% Similarity=0.069 Sum_probs=95.6
Q ss_pred HHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCC------C-c
Q 044858 160 LKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGL------K-I 231 (426)
Q Consensus 160 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~------~-~ 231 (426)
-..+...+..++ ...+.++|+.|+||+++|..+....--...... ..+..-..-+.+...-.. + .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 345556665555 457889999999999999999876532111100 000000111111100000 0 0
Q ss_pred cccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecch-hhhhccCCceeeEEc
Q 044858 232 DQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQ-DVLSCEMDCQQNFVV 304 (426)
Q Consensus 232 ~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~va~~~~~~~~~~~l 304 (426)
...-..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-.-..++.+|++|.+. .+.....+....+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 00011233334444432 356668889999755 33444444443333466666666654 443323445678999
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
.++++++..+.+...... + ...+...++.++|.|+..
T Consensus 164 ~~~~~~~~~~~L~~~~~~----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCHHHHHHHHHHHhcc----C--hHHHHHHHHHcCCCHHHH
Confidence 999999999888875421 1 123556788999999733
No 132
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.79 E-value=0.00051 Score=72.67 Aligned_cols=173 Identities=17% Similarity=0.215 Sum_probs=95.9
Q ss_pred cccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 150 FMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
...+.|.+..++.|.+.+. -..++-+.++|++|+|||+||+.+.+..... | +.+..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 4455676666655555432 1234568899999999999999999886532 2 22221
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------C-----hhhhcCCCCC--CCCCe
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL---------D-----LEAIGIPLAD--DNGGC 280 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~-----~~~l~~~l~~--~~~~s 280 (426)
.+++. . .-.. ....+..++.......+++|+||+++... . ...+...+.. ...+.
T Consensus 521 ~~l~~----~----~vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PEILS----K----WVGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHHhh----c----ccCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111 1 1111 12234556666655678999999986431 0 1112111211 22344
Q ss_pred EEEEeecchhhh-h---ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 281 KVLLTARSQDVL-S---CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 281 ~iivTtr~~~va-~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
-||.||...... . ....-...+.++..+.++-.++|+.........++. -...+++.|.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 566666554332 1 112345678888889999999998766433222211 1355777777754
No 133
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.79 E-value=0.00091 Score=71.02 Aligned_cols=157 Identities=19% Similarity=0.163 Sum_probs=81.9
Q ss_pred cccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 152 HFESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
.++|.+..++.+.+++. ..+.+++.++|++|+|||++|+.+.+..... |- -++.+...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~~---~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--FV---RFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--eE---EEeCCCcccHHHHcCC---
Confidence 36677777777777653 2234579999999999999999999887532 31 2223332233322110
Q ss_pred HhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC------hhhhcC--------CCCCC-------CCCeEEEE
Q 044858 226 KLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD------LEAIGI--------PLADD-------NGGCKVLL 284 (426)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~--------~l~~~-------~~~s~iiv 284 (426)
............. +.+..... ++-+++||+++.... ...+.. .|.+. ..+..+|.
T Consensus 393 --~~~~~g~~~g~i~-~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 --RRTYVGAMPGRII-QGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred --CCceeCCCCchHH-HHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 0000011111111 22222222 334789999965421 011111 11111 12333444
Q ss_pred eecchh-hhhccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 285 TARSQD-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 285 Ttr~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
||.... +..........+++.+++.++-.+++...+
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 554332 112223445689999999999988887654
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00047 Score=68.00 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
.-+.|+|+.|+|||+|++.+.+..... ...+++++. .++...+...+... ........+. +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--cC
Confidence 458899999999999999999987643 223455542 34444554444211 1112222222 34
Q ss_pred EEEEEeCCCCccC--h--hhhcCCCCC-CCCCeEEEEeecchhh-----hh---ccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 253 ILIILDDIWGSLD--L--EAIGIPLAD-DNGGCKVLLTARSQDV-----LS---CEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 253 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~~s~iivTtr~~~v-----a~---~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
-+|++||+..... + +.+...+.. ...|..||+||..... .. ........+.+.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5899999975422 1 122222110 1135578888855311 11 11223468899999999999999988
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCch
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
+.... ..--+++..-|++.+.|.-
T Consensus 284 ~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 75322 1112456666777776543
No 135
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00046 Score=66.24 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=97.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
...+.|+|+.|.|||.|++.+.+..... ......++++ ..+...+.+..+.. .......+.. +
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~----se~f~~~~v~a~~~--------~~~~~Fk~~y-~-- 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLT----SEDFTNDFVKALRD--------NEMEKFKEKY-S-- 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEecc----HHHHHHHHHHHHHh--------hhHHHHHHhh-c--
Confidence 5679999999999999999999988754 3322233332 23333333333211 1122333333 1
Q ss_pred eEEEEEeCCCCcc---Chhh-h---cCCCCCCCCCeEEEEeecchhhh--------hccCCceeeEEccCCCHHHHHHHH
Q 044858 252 KILIILDDIWGSL---DLEA-I---GIPLADDNGGCKVLLTARSQDVL--------SCEMDCQQNFVVDVLNDKEAWSLF 316 (426)
Q Consensus 252 ~~LlVlDdv~~~~---~~~~-l---~~~l~~~~~~s~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~e~~~Lf 316 (426)
-=++++||++... .|+. + ...+.. .|-+||+|++..+-. .......-++.+.+.+.+....++
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 2389999997542 2222 2 222222 233899998665321 112234568999999999999999
Q ss_pred HHhhCCC--CCCCchHHHHHHHHHHcCC----chHHHHHHHHHhh--c-C-CHHHHHHHHHHHhh
Q 044858 317 KKMTGDC--IENGELKSVVTEVVKECAG----LPIAIVPIAKALK--N-K-SPYEWRNALRQLKR 371 (426)
Q Consensus 317 ~~~~~~~--~~~~~~~~~~~~i~~~c~G----lPlai~~~~~~l~--~-~-~~~~w~~~l~~l~~ 371 (426)
.+.+... ..++ ++..-|++.... +.-|+..+..+-. + . |...-+.++..+..
T Consensus 254 ~kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 254 RKKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 9877422 1222 233334433333 3334433322221 2 1 66666666666543
No 136
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.77 E-value=0.00026 Score=67.09 Aligned_cols=100 Identities=12% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccce-EEEEEecC-CcCHHHHHHHHHHHhCCCccccCcH
Q 044858 161 KGILDALSN-RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-VISSRVSQ-TPQIKEIQREIAEKLGLKIDQESES 237 (426)
Q Consensus 161 ~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~-~~~~~~il~~i~~~l~~~~~~~~~~ 237 (426)
..+++.+.. ++-.-+.|+|++|+|||||++.+.+....+ +-+. ++|+.+.+ ..++.++++.+...+..+....+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346666552 233467999999999999999999877543 3344 46766664 4578889999888776544322221
Q ss_pred H------HHHHHHHHH-hcCCeEEEEEeCCC
Q 044858 238 V------RAWRLLEQL-KKETKILIILDDIW 261 (426)
Q Consensus 238 ~------~~~~l~~~l-~~~k~~LlVlDdv~ 261 (426)
. .+....+++ .++++.+||+|++.
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 122333333 35899999999985
No 137
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.76 E-value=0.0029 Score=66.86 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=87.8
Q ss_pred ccccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 151 MHFESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
...+|.++.++.|++++. ..+..++.++|++|+||||+++.+....... | +-+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 346788888888888776 1245689999999999999999999865432 3 2233343334333221111
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC------hhhhcCCCCC---------------CCCCeEEE
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD------LEAIGIPLAD---------------DNGGCKVL 283 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~---------------~~~~s~ii 283 (426)
...+. ......+.+. ... ...-+++||+++.... ...+...+-. .-.+.-+|
T Consensus 397 ~~~g~-----~~G~~~~~l~-~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGS-----MPGKLIQKMA-KVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCC-----CCcHHHHHHH-hcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11110 1111111121 111 1234788999964421 1222221111 11344455
Q ss_pred EeecchhhhhccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 284 LTARSQDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 284 vTtr~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
.|+....+.....+....+.+.+++.++-.++.++++
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5654444333334455789999999999999988776
No 138
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0016 Score=65.56 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=89.8
Q ss_pred ccccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 151 MHFESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.+.+|-++.++.+++++. +.+-+++..+||+|+|||++++.++.....+ | +-++++.-.+..+|-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 445788888888888875 3356799999999999999999999887643 3 2455666555555321100
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhc--CCeEEEEEeCCCCcc------ChhhhcCCCCC-CC------------CCeEEE
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKK--ETKILIILDDIWGSL------DLEAIGIPLAD-DN------------GGCKVL 283 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~------------~~s~ii 283 (426)
..+| .-. .++.+.|+. -.+-|+.||+|+... .-..+...+-+ .+ -=|+|+
T Consensus 486 TYVG-----AMP----GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 486 TYVG-----AMP----GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeec-----cCC----hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 0111 000 123333321 245688899986431 11111111110 00 125665
Q ss_pred Eeecchhhh---hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 284 LTARSQDVL---SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 284 vTtr~~~va---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
+...-..+. .........|++.+...+|-..+-.+++
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 533332221 2233455789999999999888887765
No 139
>PHA00729 NTP-binding motif containing protein
Probab=97.74 E-value=0.0003 Score=62.11 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=28.5
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 162 GILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 162 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++..+...+...|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555555666899999999999999999998753
No 140
>PRK08116 hypothetical protein; Validated
Probab=97.73 E-value=0.00013 Score=66.99 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
.-+.++|..|+|||.||..+++....+ ...+++++ ..+++..+......... .....+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~~-~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLVN-A- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhcC-C-
Confidence 358899999999999999999987654 23455554 45566666555432111 112234455543 2
Q ss_pred EEEEEeCCCC--ccChhh--hcCCCCC-CCCCeEEEEeecch
Q 044858 253 ILIILDDIWG--SLDLEA--IGIPLAD-DNGGCKVLLTARSQ 289 (426)
Q Consensus 253 ~LlVlDdv~~--~~~~~~--l~~~l~~-~~~~s~iivTtr~~ 289 (426)
=||||||+.. ..+|.. +...+.. ..++..+|+||...
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999943 344432 2221111 12455688888654
No 141
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.73 E-value=0.00051 Score=60.80 Aligned_cols=172 Identities=19% Similarity=0.278 Sum_probs=99.3
Q ss_pred cccccchHHHHH---HHHHHhccC------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHH
Q 044858 150 FMHFESRKSTLK---GILDALSNR------NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ 220 (426)
Q Consensus 150 ~~~~~gR~~~~~---~l~~~l~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il 220 (426)
..+++|.++... -|++.|.++ .++.|..+|++|.|||.+|+.+.+..++. | +.+.. .++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HHH-
Confidence 455677766544 366777654 47889999999999999999999988764 2 22211 111
Q ss_pred HHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc----------cC----hhhhcCCCC--CCCCCeEEEE
Q 044858 221 REIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS----------LD----LEAIGIPLA--DDNGGCKVLL 284 (426)
Q Consensus 221 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~----------~~----~~~l~~~l~--~~~~~s~iiv 284 (426)
|-+..| +....+.++++...+.-+|++.||.++-. .+ .+.+...+. ..+.|...|-
T Consensus 188 --iGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 --IGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred --HHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111221 22345667777777778999999998532 11 222222221 2234655555
Q ss_pred eecchhhhhcc--CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 285 TARSQDVLSCE--MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 285 Ttr~~~va~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
.|.+....... ..-...|+...=+++|-.+++...+..-..+-+ .-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 55555443111 122345666666788888888877742211111 1145566677664
No 142
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=2.2e-05 Score=66.86 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEE
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVIS 207 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 207 (426)
-|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999987653 45676665
No 143
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.68 E-value=0.002 Score=61.79 Aligned_cols=192 Identities=17% Similarity=0.200 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHH-HHHHHHhhhcCccceEEEEEecC---CcCHHHHHHHHHHHhCCC-
Q 044858 156 RKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLV-KEVGRQAKENNLFEKVISSRVSQ---TPQIKEIQREIAEKLGLK- 230 (426)
Q Consensus 156 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~il~~i~~~l~~~- 230 (426)
|.+..++|..||.+..-.+|.|.||.|+||+.|+ .++..+.+. +..+.+.+ ..+-..+++.++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5667889999999888889999999999999999 777765432 44444432 123344555555555421
Q ss_pred ----------------------ccc--cCcHHHHHHHH-------HH--------------------H--hcCCeEEEEE
Q 044858 231 ----------------------IDQ--ESESVRAWRLL-------EQ--------------------L--KKETKILIIL 257 (426)
Q Consensus 231 ----------------------~~~--~~~~~~~~~l~-------~~--------------------l--~~~k~~LlVl 257 (426)
..+ ++....+.+++ +. + ...++=+|||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 000 11111111111 11 0 0123678999
Q ss_pred eCCCCcc-----------ChhhhcCCCCCCCCCeEEEEeecchhhh-----hccCCceeeEEccCCCHHHHHHHHHHhhC
Q 044858 258 DDIWGSL-----------DLEAIGIPLADDNGGCKVLLTARSQDVL-----SCEMDCQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 258 Ddv~~~~-----------~~~~l~~~l~~~~~~s~iivTtr~~~va-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
|+.-... +|.. .+.. ++=-+||++|-+.... ..+....+.+.|.-.+++.|.++..+.+.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa---~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAA---SLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHH---HHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9985431 2332 1211 2334688888775443 12345668899999999999999999986
Q ss_pred CCCCC-------------------CchHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 044858 322 DCIEN-------------------GELKSVVTEVVKECAGLPIAIVPIAKALKNK 357 (426)
Q Consensus 322 ~~~~~-------------------~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~ 357 (426)
..... .....-....+..+||=-.-+..+++.++.-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 32110 1233445677888999999999999988843
No 144
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.67 E-value=0.00042 Score=58.66 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCc------------------cceEEEEEecCC--
Q 044858 155 SRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNL------------------FEKVISSRVSQT-- 213 (426)
Q Consensus 155 gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------f~~~~wv~v~~~-- 213 (426)
|.++..+.|.+.+..++. ..+.++|+.|+||+++|..+.+..-.... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 345666777777766664 46899999999999999998876532211 122233322221
Q ss_pred -cCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchh
Q 044858 214 -PQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQD 290 (426)
Q Consensus 214 -~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~ 290 (426)
...+++. ++...+..... .+++=++||||++.. ...+.+...+-.-..++.+|++|.+..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2232222 33332221111 235678999999754 345555444433445788888888764
Q ss_pred -hhhccCCceeeEEccCCC
Q 044858 291 -VLSCEMDCQQNFVVDVLN 308 (426)
Q Consensus 291 -va~~~~~~~~~~~l~~L~ 308 (426)
+.....+....+.+.+||
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 332233445677777764
No 145
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.67 E-value=0.00058 Score=61.00 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV 210 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 210 (426)
-.++|.|..|+|||||+..+..... ..|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 3578999999999999999988765 45877766654
No 146
>PRK04132 replication factor C small subunit; Provisional
Probab=97.66 E-value=0.0013 Score=69.20 Aligned_cols=159 Identities=12% Similarity=0.077 Sum_probs=96.3
Q ss_pred Ec--CCCCcHHHHHHHHHHHhhhcCccc-eEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEE
Q 044858 178 YG--MGGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKIL 254 (426)
Q Consensus 178 ~G--~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~L 254 (426)
.| |.++||||+|..++++.-.. .+. .++-++++...+...+- +++..+....+ +...+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEE
Confidence 47 88999999999999886332 232 45667777655555433 33332211000 00124579
Q ss_pred EEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecch-hhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHH
Q 044858 255 IILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQ-DVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKS 331 (426)
Q Consensus 255 lVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~ 331 (426)
+|||+++... ..+.+...+-.-...+++|++|.+. .+.....+....+++.+++.++....+...+....-. -..+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e 712 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEE 712 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHH
Confidence 9999998663 4444444333223456666666554 3322233456799999999999998888766422111 1145
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 044858 332 VVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 332 ~~~~i~~~c~GlPlai~~~~~~ 353 (426)
....|++.|+|.+.....+...
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 7889999999988655444443
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.66 E-value=0.00055 Score=72.98 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHhc-------cC--CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALS-------NR--NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|.+..++.+.+.+. ++ ...++.++|+.|+|||.||+.+....-
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46788888888777764 11 234789999999999999999987753
No 148
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00078 Score=69.03 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=108.4
Q ss_pred cccccchH---HHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHH
Q 044858 150 FMHFESRK---STLKGILDALSNR---------NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIK 217 (426)
Q Consensus 150 ~~~~~gR~---~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 217 (426)
+.++.|-+ +|+.++++.|.++ -++=+.++|++|+|||-||+.++-...+. |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 44555654 5667777777643 25568899999999999999999888765 4555432
Q ss_pred HHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------------hhhhcCCCCCC--CC
Q 044858 218 EIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-----------------LEAIGIPLADD--NG 278 (426)
Q Consensus 218 ~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----------------~~~l~~~l~~~--~~ 278 (426)
++... +.. .....+..++...+...++++.+|+++...- ++.+...+-.. ..
T Consensus 379 EFvE~----~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 EFVEM----FVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred HHHHH----hcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11111 110 0124566677777778899999999864311 22221111111 12
Q ss_pred CeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 044858 279 GCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIV 348 (426)
Q Consensus 279 ~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 348 (426)
+.-++-+|...++.+ +...-...+.++.=+.....++|.-++.......+..++.+ |+...-|.+=|..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHH
Confidence 233334555554431 12233457778877888889999988875554455566666 8888888876543
No 149
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00074 Score=68.06 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=89.8
Q ss_pred cccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 152 HFESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
+.+|-++..+.|+++|. .-+-++++++||+|+|||+|++.+++....+ | +-++++.-.|..+|-..=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccccc
Confidence 45688888899998885 2244799999999999999999999987644 4 23444444444433111000
Q ss_pred HhCCCccccCcHHHHHHHHHHHh--cCCeEEEEEeCCCCcc------ChhhhcCCCCC-CC------------CCeEE-E
Q 044858 226 KLGLKIDQESESVRAWRLLEQLK--KETKILIILDDIWGSL------DLEAIGIPLAD-DN------------GGCKV-L 283 (426)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~------------~~s~i-i 283 (426)
.+| .-. .++.+.+. +.++-+++||.++... .-..+...|-+ .+ -=|.| .
T Consensus 399 YIG-----amP----GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 399 YIG-----AMP----GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccc-----cCC----hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 111 000 12333332 2356789999986431 11111111110 00 11334 3
Q ss_pred Eeecch-h-hhhccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 284 LTARSQ-D-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 284 vTtr~~-~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
|+|-+. . +.........+|++.+-+++|=.++-++++
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444442 2 222245567899999999999999988876
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00064 Score=71.73 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=56.5
Q ss_pred cccchHHHHHHHHHHhc-------cC--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 152 HFESRKSTLKGILDALS-------NR--NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.++|.+..++.+...+. ++ ...++.++|+.|+|||+||+.+..... ...+.++.+...+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc----
Confidence 35666777777666654 11 234688999999999999999988663 2234444443222111
Q ss_pred HHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 223 IAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
+...++.+..... .+....+.+.+......+|+||+++..
T Consensus 526 ~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1112222211111 111223444454444569999999754
No 151
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.61 E-value=0.00032 Score=70.98 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=40.5
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+..++|.+..+..+...+......-+.|+|++|+|||++|+.+++..+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567889998888888777665566678999999999999999987543
No 152
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00022 Score=69.14 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=63.6
Q ss_pred cccccch---HHHHHHHHHHhccC--------C-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHH
Q 044858 150 FMHFESR---KSTLKGILDALSNR--------N-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIK 217 (426)
Q Consensus 150 ~~~~~gR---~~~~~~l~~~l~~~--------~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 217 (426)
+.+..|- .+|+++++++|.++ + ++=|.++|++|.|||-||+.+.-...+. | |...+..|+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdE- 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDE- 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhh-
Confidence 3344444 56888999999853 2 4568899999999999999999887765 2 3333333331
Q ss_pred HHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 218 EIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 218 ~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
++-.. -..++..++...+..-+|+|++|+++..
T Consensus 376 -----m~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 376 -----MFVGV--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred -----hhhcc--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11111 1245667777777778999999999754
No 153
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0018 Score=58.62 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=92.2
Q ss_pred ccccchHHHHHHHHHHhc----------cC--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHH
Q 044858 151 MHFESRKSTLKGILDALS----------NR--NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKE 218 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~----------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 218 (426)
.++.|-+...+.|.+... .. .-+-|.++|++|.||+.||+.|....... |.+||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH----H
Confidence 344555555566555432 12 24678999999999999999999776532 3445433 2
Q ss_pred HHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------ChhhhcCCC-------CCCCCCeEE
Q 044858 219 IQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL---------DLEAIGIPL-------ADDNGGCKV 282 (426)
Q Consensus 219 il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~l-------~~~~~~s~i 282 (426)
+....+ .....++..+++..++.|+.+|++|++++.. .-+.+...| .++..|.-|
T Consensus 202 LvSKWm---------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 202 LVSKWM---------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHHHh---------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 222111 1223466777887788899999999997441 112222111 223345555
Q ss_pred EEeecchhhhhccC--CceeeEEccCCCHHHHHH-HHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 283 LLTARSQDVLSCEM--DCQQNFVVDVLNDKEAWS-LFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 283 ivTtr~~~va~~~~--~~~~~~~l~~L~~~e~~~-Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
+-.|...-+..... .-...|.+ ||++..+.. +|+-.++... ..-.+.-.+.+.++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCCC
Confidence 55666554431111 11122222 455555543 4555555322 222233455667777765
No 154
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.51 E-value=0.00064 Score=60.20 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh-C---CCc---cccC---cHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL-G---LKI---DQES---ESVRAW 241 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l-~---~~~---~~~~---~~~~~~ 241 (426)
-.++.|+|++|+|||+++.++....... ...++|++... ++...+.+. +... . .+. ...+ ....+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4689999999999999999988776533 45788998875 665554443 2221 0 000 0011 112244
Q ss_pred HHHHHHhcCCeEEEEEeCCC
Q 044858 242 RLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 242 ~l~~~l~~~k~~LlVlDdv~ 261 (426)
.+.+.+.+.+.-+||+|.+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHhhcCccEEEEeCcH
Confidence 44444544456799999985
No 155
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0065 Score=57.63 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=61.8
Q ss_pred HHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhccCCceeeEEccCCCHH
Q 044858 238 VRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSCEMDCQQNFVVDVLNDK 310 (426)
Q Consensus 238 ~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~~~~~~~~~l~~L~~~ 310 (426)
+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-.-.+++.+|++|.+ ..+.....+....+.+.+++.+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 34444444442 245568899999754 3455554444333345655555554 5444333444578999999999
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 044858 311 EAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIV 348 (426)
Q Consensus 311 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 348 (426)
+..+.+... + . ++ ...++..++|.|+...
T Consensus 195 ~~~~~L~~~-~--~--~~----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 195 AAAAWLAAQ-G--V--AD----ADALLAEAGGAPLAAL 223 (342)
T ss_pred HHHHHHHHc-C--C--Ch----HHHHHHHcCCCHHHHH
Confidence 999988764 1 1 11 2235778899997544
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.49 E-value=0.00074 Score=58.96 Aligned_cols=88 Identities=24% Similarity=0.246 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCccc----cCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDQ----ESESVRAWRLLEQ 246 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~~~----~~~~~~~~~l~~~ 246 (426)
+++|.++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+... .+......+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999999888877654 33455666542 234566778888888876422 1233344444444
Q ss_pred HhcCCeEEEEEeCCC
Q 044858 247 LKKETKILIILDDIW 261 (426)
Q Consensus 247 l~~~k~~LlVlDdv~ 261 (426)
+..++.=++++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 443333477788663
No 157
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.49 E-value=0.0095 Score=56.59 Aligned_cols=43 Identities=28% Similarity=0.486 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 157 KSTLKGILDALSN---RNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 157 ~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
+...+.|.+.+.+ +.+.+|+|.|.=|+||||+.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3344556666653 457799999999999999999999887764
No 158
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0032 Score=62.35 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=90.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
+.=|.++|++|+|||-||+.|.|..+.. |+++-.+ +++.... | .....+.++++..+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcCC
Confidence 5568899999999999999999998865 4555432 2332221 1 12234567777777788
Q ss_pred eEEEEEeCCCCc-------cCh------hhhcCCCC--CCCCCeEEEEeecchhhh-h---ccCCceeeEEccCCCHHHH
Q 044858 252 KILIILDDIWGS-------LDL------EAIGIPLA--DDNGGCKVLLTARSQDVL-S---CEMDCQQNFVVDVLNDKEA 312 (426)
Q Consensus 252 ~~LlVlDdv~~~-------~~~------~~l~~~l~--~~~~~s~iivTtr~~~va-~---~~~~~~~~~~l~~L~~~e~ 312 (426)
+|+|+||+++.. ..| +.+...+- ....|..||-.|...++- + +...-...+.++.=+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999999754 111 22222221 234566677766555442 1 1222345667777788888
Q ss_pred HHHHHHhhCCCC----CCCchHHHHHHHHHHcCCc
Q 044858 313 WSLFKKMTGDCI----ENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 313 ~~Lf~~~~~~~~----~~~~~~~~~~~i~~~c~Gl 343 (426)
..+++....+.. .+-++.+++.. .+|.|.
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 889888876322 22344444432 355564
No 159
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0055 Score=58.18 Aligned_cols=173 Identities=11% Similarity=0.086 Sum_probs=94.3
Q ss_pred HHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCcc---ce-----EEEEEecCCcCHHHHHHHHHHHhCCC
Q 044858 160 LKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLF---EK-----VISSRVSQTPQIKEIQREIAEKLGLK 230 (426)
Q Consensus 160 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~v~~~~~~~~il~~i~~~l~~~ 230 (426)
-+.+...+..++ ...+.++|+.|+||+++|..+....--.... .| +-++.....+|+..+. +
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~---------p 81 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT---------P 81 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---------c
Confidence 455666666554 4578899999999999999987665321100 00 0000000111100000 0
Q ss_pred cc--ccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhccCCceee
Q 044858 231 ID--QESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSCEMDCQQN 301 (426)
Q Consensus 231 ~~--~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~~~~~~~ 301 (426)
.. ..-..+.+..+.+.+. .+++-++|+|+++.. ..-+.+...+-.-..++.+|++|.+ ..+.....+....
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 00 0011223334444432 356679999999754 3344444334332345666666655 4444323344568
Q ss_pred EEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 302 FVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 302 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
+.+.+++.++..+.+....+ . + .+.+..+++.++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~--~-~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVT--M-S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHccC--C-C---HHHHHHHHHHcCCCHHHH
Confidence 89999999999988865422 1 1 233667899999999744
No 160
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.48 E-value=0.0013 Score=69.66 Aligned_cols=174 Identities=16% Similarity=0.211 Sum_probs=93.5
Q ss_pred CcccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 149 DFMHFESRKSTLKGILDALSN-------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
.+.++.|.+..++.+.+.+.- ...+-+.++|++|+|||+||+.+++..... | +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH----
Confidence 445678888888877666531 234568899999999999999998876422 2 222211
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C-----hhhhcCCCCC-CCCCeE
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--------D-----LEAIGIPLAD-DNGGCK 281 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~-~~~~s~ 281 (426)
++... . . ......+..+++......+.+|+|||++... . ...+...+.. ...+..
T Consensus 247 --~i~~~----~----~-g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --EIMSK----Y----Y-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --HHhcc----c----c-cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11100 0 0 0111234445555555567899999986431 0 1112211111 112333
Q ss_pred EEE-eecchh-hhh---ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 282 VLL-TARSQD-VLS---CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 282 iiv-Ttr~~~-va~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
+|| ||.... +.. ....-...+.+...+.++-.+++..........++ .....+++.+.|..
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCC
Confidence 444 444322 111 11112356788888888888888866543222111 12456777787764
No 161
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0016 Score=65.05 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=86.1
Q ss_pred CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
....++-|-++.+.+|-+... -+.++-|..+|++|+|||++|+.+.+..... |+.++.+
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n-------Flsvkgp- 502 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN-------FLSVKGP- 502 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC-------eeeccCH-
Confidence 344555566665555544332 1456788999999999999999999987754 3333321
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------hhhhcCCCCCCCCCeE
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-------------LEAIGIPLADDNGGCK 281 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~~s~ 281 (426)
+++... -. .....+..+++.-.+--++++.||+++.... +..+...+........
T Consensus 503 ---EL~sk~--------vG-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ---ELFSKY--------VG-ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ---HHHHHh--------cC-chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 111111 11 1123455566666666789999999864411 1111111111111112
Q ss_pred EEE---eecchhhhh---ccCCceeeEEccCCCHHHHHHHHHHhhCCC
Q 044858 282 VLL---TARSQDVLS---CEMDCQQNFVVDVLNDKEAWSLFKKMTGDC 323 (426)
Q Consensus 282 iiv---Ttr~~~va~---~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 323 (426)
|+| |-|...+-. ....-...+.+++=+.+.-.++|+.++...
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 333 233333221 122345677777777777888999888643
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.001 Score=68.65 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=95.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc----eEEEEEecCCcCHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----KVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~v~~~~~~~~il~~i 223 (426)
....+.+||++|++.+++.|....-..-.++|.+|+|||+++.-++.+....+-.. ..++. .++..+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~L---- 237 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGSL---- 237 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHHH----
Confidence 34677899999999999999843323345889999999999999888765432111 11110 011111
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------Chh--h-hcCCCCCCCCCeEEEEeecchhh-
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--------DLE--A-IGIPLADDNGGCKVLLTARSQDV- 291 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~~~--~-l~~~l~~~~~~s~iivTtr~~~v- 291 (426)
.....-...-.+++..+.+.+.+..+.+|++|.++..- ..+ . ++..|. .+.--.|--||-++.-
T Consensus 238 ---vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~~EYRk 313 (786)
T COG0542 238 ---VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTLDEYRK 313 (786)
T ss_pred ---hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccHHHHHH
Confidence 11111112334566777777776669999999997541 111 1 222222 2222235566665532
Q ss_pred --h--hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 292 --L--SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 292 --a--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
. .......+.+.+..-+.+++..+++-..
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0 1123456789999999999999987543
No 163
>PRK08181 transposase; Validated
Probab=97.45 E-value=0.00027 Score=64.75 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.++|++|+|||.||..+.+....+ ...+.|++ ..+++..+..... .. .....++.+. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~~----~~~~~l~~l~--~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----EL----QLESAIAKLD--KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----CC----cHHHHHHHHh--cC
Confidence 458999999999999999999876543 22345554 3556666643321 11 1223444443 34
Q ss_pred EEEEEeCCCCc--cCh-h-hhcCCCCCCCCCeEEEEeecch
Q 044858 253 ILIILDDIWGS--LDL-E-AIGIPLADDNGGCKVLLTARSQ 289 (426)
Q Consensus 253 ~LlVlDdv~~~--~~~-~-~l~~~l~~~~~~s~iivTtr~~ 289 (426)
=||||||+... ..+ . .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999643 222 1 1222221111123588888765
No 164
>PRK07261 topology modulation protein; Provisional
Probab=97.42 E-value=0.00055 Score=58.51 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEE
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVIS 207 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 207 (426)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48899999999999999998765432 23444555
No 165
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.42 E-value=0.0018 Score=58.06 Aligned_cols=211 Identities=14% Similarity=0.166 Sum_probs=118.2
Q ss_pred cccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhh----cCccceEEEEEecCC----------c---
Q 044858 152 HFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKE----NNLFEKVISSRVSQT----------P--- 214 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~v~~~----------~--- 214 (426)
.+.++++....+......+..+-..++|+.|.||-|.+..+.+..-. +-.-+...|.+-|.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35566666666666655667888999999999999988777766432 111233445444432 1
Q ss_pred --------CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeE-EEEEeCCCCc--cChhhhcCCCCCCCCCeEEE
Q 044858 215 --------QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKI-LIILDDIWGS--LDLEAIGIPLADDNGGCKVL 283 (426)
Q Consensus 215 --------~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ii 283 (426)
.-.-+.+++++.++...+-+ . ...++| ++|+-.+++. +.-..+......-.+.+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie----------~--~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIE----------T--QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchh----------h--ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 11224444444433211110 0 012445 5556555443 11122222222224567777
Q ss_pred Eeecchh-hhhccCCceeeEEccCCCHHHHHHHHHHhhCCCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHhh--cC--
Q 044858 284 LTARSQD-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCI-ENGELKSVVTEVVKECAGLPIAIVPIAKALK--NK-- 357 (426)
Q Consensus 284 vTtr~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~--~~-- 357 (426)
+...+-+ +-....+..-.+++...+++|....+.+.+.... .-| .+++.+|+++++|+---...+...++ +.
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 6433211 1111223345788999999999999998875322 222 67899999999997554444443333 11
Q ss_pred -------CHHHHHHHHHHHhhccccC
Q 044858 358 -------SPYEWRNALRQLKRNFLRS 376 (426)
Q Consensus 358 -------~~~~w~~~l~~l~~~~~~~ 376 (426)
+.-+|+-+..+.......+
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~~i~~e 265 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIARVILKE 265 (351)
T ss_pred cccCCCCCCccHHHHHHHHHHHHHhc
Confidence 4568999988877654443
No 166
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.40 E-value=0.0008 Score=60.77 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceEEEEEecCCcCHHHHHHHHHHHhCCCccc-------------c
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-------------E 234 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-------------~ 234 (426)
-.++.|+|++|+|||+|+.+++........ ...++|++....++..++. ++++..+..... .
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999755322211 2578899988877755443 344443322110 0
Q ss_pred CcHHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 044858 235 SESVRAWRLLEQLKKE-TKILIILDDIWG 262 (426)
Q Consensus 235 ~~~~~~~~l~~~l~~~-k~~LlVlDdv~~ 262 (426)
.....+..+.+.+.+. +.-+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1112334455555555 788999999853
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.008 Score=62.29 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=63.5
Q ss_pred cccchHHHHHHHHHHhc-------cC--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 152 HFESRKSTLKGILDALS-------NR--NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.++|.++.+..+.+.+. ++ ...++...||.|+|||.||+.+....-..+ +..+-++.|....- ..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~Ek----Hs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEK----HS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHH----HH
Confidence 35777888877777764 22 345778899999999999999988763211 23333333322111 11
Q ss_pred HHHHhCCCccccCcHHHHHHHHHHHhcCCeE-EEEEeCCCCc--cChhhhcCCC
Q 044858 223 IAEKLGLKIDQESESVRAWRLLEQLKKETKI-LIILDDIWGS--LDLEAIGIPL 273 (426)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~l~~~l 273 (426)
+.+-+|.+..--.. +....+-+.+++ +|| +|+||++... +..+-+...|
T Consensus 566 VSrLIGaPPGYVGy-eeGG~LTEaVRr-~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 566 VSRLIGAPPGYVGY-EEGGQLTEAVRR-KPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHHHhCCCCCCcee-ccccchhHhhhc-CCCeEEEechhhhcCHHHHHHHHHHh
Confidence 22223333322111 113345566654 566 8889999744 3344443333
No 168
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.36 E-value=0.012 Score=54.48 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=99.9
Q ss_pred ccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc-eEEEEEecCCcCH-HHHHHHHH
Q 044858 151 MHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQI-KEIQREIA 224 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~-~~il~~i~ 224 (426)
..++|-.++-.++-.++. .+...-+.|+||.|+|||+|......+.. .+. ..+-|...+..-. +-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHH
Confidence 346666666666665554 34455688999999999999998887722 233 3344455443322 33666676
Q ss_pred HHhCCCcc-----ccCcHHHHHHHHHHHhc-----CCeEEEEEeCCCCccC-------hhhhcCCCCCCCCCeEEEEeec
Q 044858 225 EKLGLKID-----QESESVRAWRLLEQLKK-----ETKILIILDDIWGSLD-------LEAIGIPLADDNGGCKVLLTAR 287 (426)
Q Consensus 225 ~~l~~~~~-----~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~~s~iivTtr 287 (426)
+|+..... ..+-.+....++..+.. +-++++|+|+++-... .+-+...-....+=|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 66643221 12334456667777653 3458888888754321 1111112123345677888998
Q ss_pred chhhh------hccCCceeeEEccCCCHHHHHHHHHHhhC
Q 044858 288 SQDVL------SCEMDCQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 288 ~~~va------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
-.... ........++-+++++-++...++++.+.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 76442 11223334667778899999999998874
No 169
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.36 E-value=0.00091 Score=62.65 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 044858 155 SRKSTLKGILDALSN----RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK 230 (426)
Q Consensus 155 gR~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~ 230 (426)
+|........+++.+ ...+-+.++|+.|+|||.||..+++....+ .+ .+.++++ .+++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 344444444455441 234578999999999999999999998643 23 3445544 35666665554211
Q ss_pred ccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhh--hcCCCCCC--CCCeEEEEeecc
Q 044858 231 IDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEA--IGIPLADD--NGGCKVLLTARS 288 (426)
Q Consensus 231 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~~l~~~--~~~s~iivTtr~ 288 (426)
.....++.+. +-=||||||+... ..|.. +...+... ..+-.+|+||--
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1223444453 4569999999643 45643 32222111 134457777754
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0026 Score=60.44 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=78.9
Q ss_pred ccchHHHHHHHHHHhc-cCCcc-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------ccceEEEEEec
Q 044858 153 FESRKSTLKGILDALS-NRNFN-MIGVYGMGGIGKTTLVKEVGRQAKENN-------------------LFEKVISSRVS 211 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~-~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~v~ 211 (426)
+++-+.....+..+.. .++.+ .+.++|+.|+||||+|..+.+...... ..+.+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 3455556666666666 33344 499999999999999999998765321 11233344444
Q ss_pred CCcC---HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEee
Q 044858 212 QTPQ---IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTA 286 (426)
Q Consensus 212 ~~~~---~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTt 286 (426)
.... ..+..+++.+....... .++.-++++|+++... .-..+...+......+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 3333 23333333333221111 2467799999997652 2333333333344567788877
Q ss_pred cch-hhhhccCCceeeEEccCCCH
Q 044858 287 RSQ-DVLSCEMDCQQNFVVDVLND 309 (426)
Q Consensus 287 r~~-~va~~~~~~~~~~~l~~L~~ 309 (426)
... .+.....+....+++.+.+.
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred CChhhccchhhhcceeeecCCchH
Confidence 743 33332334456777777333
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.35 E-value=0.0018 Score=69.23 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhc-------cC-C-ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALS-------NR-N-FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~-------~~-~-~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|.+..++.+...+. ++ + ..++.++|+.|+|||+||+.+.+...
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788887777777664 11 1 24788999999999999999997653
No 172
>PRK06526 transposase; Provisional
Probab=97.34 E-value=0.00026 Score=64.48 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=44.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
...+.++|++|+|||+||..+.+.....+ +. +.|+ +..+++.++..... .. .....+..+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~~-v~f~------t~~~l~~~l~~~~~----~~----~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-HR-VLFA------TAAQWVARLAAAHH----AG----RLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-Cc-hhhh------hHHHHHHHHHHHHh----cC----cHHHHHHHhc--c
Confidence 35689999999999999999988765432 22 2332 34455555543321 01 1112233332 3
Q ss_pred eEEEEEeCCCCc
Q 044858 252 KILIILDDIWGS 263 (426)
Q Consensus 252 ~~LlVlDdv~~~ 263 (426)
.-||||||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 469999999643
No 173
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0031 Score=63.57 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=83.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC--CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ--TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
.+.|.|.|+.|+|||+||+.+++.... .+.-.+.+++.+. ..+.+.+++.+.. ++..-..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k-~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK-DLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc-ccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh
Confidence 457899999999999999999998773 3344455555543 2233333333322 1211222
Q ss_pred CCeEEEEEeCCCCc--------cChhhh---cCCCC------CCCCCe--EEEEeecchhhhh----ccCCceeeEEccC
Q 044858 250 ETKILIILDDIWGS--------LDLEAI---GIPLA------DDNGGC--KVLLTARSQDVLS----CEMDCQQNFVVDV 306 (426)
Q Consensus 250 ~k~~LlVlDdv~~~--------~~~~~l---~~~l~------~~~~~s--~iivTtr~~~va~----~~~~~~~~~~l~~ 306 (426)
-.+-+|||||++.. .+|... ...+. -...+. .+|.|.....-.. ...--.....|.+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 35899999998632 122211 00000 012233 3444444332211 1112235788999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 307 LNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 307 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
+...+-.++++........ ........-+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCc
Confidence 9988888888876643221 11223334488889885
No 174
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.28 E-value=0.0019 Score=59.95 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=50.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEEEEecCC-cCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK 248 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 248 (426)
+..++.|+|+.|+||||++..+....... +.+ .+..++.... ....+-+....+.++.+.........+...++.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 35689999999999999999998876543 222 3445554321 12233444445555555433333333444444443
Q ss_pred cCCeEEEEEeCC
Q 044858 249 KETKILIILDDI 260 (426)
Q Consensus 249 ~~k~~LlVlDdv 260 (426)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 2347777753
No 175
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.018 Score=57.34 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=50.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
..+|+|+|++|+||||++..+......+.....+..++... .....+-++...+.++...........+...++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 47899999999999999999887654432223344554422 112233344444445544333333333444455443
Q ss_pred CeEEEEEeCCC
Q 044858 251 TKILIILDDIW 261 (426)
Q Consensus 251 k~~LlVlDdv~ 261 (426)
..=+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34588888874
No 176
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.27 E-value=0.0004 Score=59.71 Aligned_cols=74 Identities=27% Similarity=0.353 Sum_probs=44.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
..-+.++|+.|+|||.||..+.+.....+ + .+.|++ ..+++..+-..- .... ...+.+.+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~------~~~L~~~l~~~~----~~~~----~~~~~~~l~~-- 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT------ASDLLDELKQSR----SDGS----YEELLKRLKR-- 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE------HHHHHHHHHCCH----CCTT----HCHHHHHHHT--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee------cCceeccccccc----cccc----hhhhcCcccc--
Confidence 45699999999999999999998766532 2 345554 345555553221 1111 1234455542
Q ss_pred eEEEEEeCCCCc
Q 044858 252 KILIILDDIWGS 263 (426)
Q Consensus 252 ~~LlVlDdv~~~ 263 (426)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 458889999644
No 177
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.27 E-value=0.0026 Score=66.04 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
+-|.++|++|+|||++|+.+....... | +.++.+ ++.. +. .+ .....+..++.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~------~~~~-~~--~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGS------DFVE-MF--VG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehH------HhHH-hh--hc------ccHHHHHHHHHHHHhcCC
Confidence 458999999999999999998876542 2 222221 1111 00 00 011223344444445578
Q ss_pred EEEEEeCCCCcc------------Ch----hhhcCCCC--CCCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHH
Q 044858 253 ILIILDDIWGSL------------DL----EAIGIPLA--DDNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDK 310 (426)
Q Consensus 253 ~LlVlDdv~~~~------------~~----~~l~~~l~--~~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~ 310 (426)
++|+||+++... .. ..+...+. ....+.-+|.||....... ....-...+.+..-+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986531 01 11111111 1123444555666554321 11223467888888888
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC
Q 044858 311 EAWSLFKKMTGDCIENGELKSVVTEVVKECAG 342 (426)
Q Consensus 311 e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G 342 (426)
+-.+++..++......++. ....+++.+.|
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 8888888777533222211 12346666666
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0021 Score=67.42 Aligned_cols=101 Identities=13% Similarity=0.197 Sum_probs=55.7
Q ss_pred ccchHHHHHHHHHHhc-------c-C-CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 153 FESRKSTLKGILDALS-------N-R-NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~-------~-~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
++|.++.++.+...+. + + ....+.++|++|+|||+||+.+...... ..+.++.+....... +
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~~----~ 530 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHT----V 530 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhccccc----H
Confidence 5677777777777665 1 1 2346889999999999999999887632 123334333221111 1
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
.+-+|.+..... ......+.+.+......+|+||++...
T Consensus 531 ~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 531 SRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 112232211111 011112334444444579999999754
No 179
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00026 Score=56.65 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998753
No 180
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.0017 Score=58.67 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=47.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
...+.++|++|+|||+||..+.+....+ ...++++++ .+++..+....... . ....+++.+. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~---~----~~~~~l~~l~--~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG---Q----SGEKFLQELC--K 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc---c----hHHHHHHHhc--C
Confidence 4678999999999999999999988754 233455544 35555554443211 0 1123445553 4
Q ss_pred eEEEEEeCCC
Q 044858 252 KILIILDDIW 261 (426)
Q Consensus 252 ~~LlVlDdv~ 261 (426)
--||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 5699999994
No 181
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.24 E-value=0.0011 Score=71.25 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=58.3
Q ss_pred cccchHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 152 HFESRKSTLKGILDALSN-------R--NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+....... -...+.++.+...+... .
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~-~-- 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS-V-- 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch-H--
Confidence 467888888888777752 1 13468899999999999999999875422 12233444443222111 1
Q ss_pred HHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 223 IAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
..-++.+..... ......+...+......+|+||++...
T Consensus 641 -~~l~g~~~g~~g-~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 -ARLIGAPPGYVG-YEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHhcCCCCCccC-cccccHHHHHHHcCCCcEEEEeccccC
Confidence 111222211111 011123344444334469999999754
No 182
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.019 Score=58.65 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=97.1
Q ss_pred CCcccccchHHHHHHHHHHhc---------cC---CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDALS---------NR---NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~---------~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
....++-|-++.+.+|.+.+. .. +..=|.++|++|.|||-||+.|+-...-. |++|-.+
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP-- 739 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP-- 739 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH--
Confidence 345667788888888887664 11 24468899999999999999999775532 4555432
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-----------Chh----hhcC---CCCC-C
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-----------DLE----AIGI---PLAD-D 276 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------~~~----~l~~---~l~~-~ 276 (426)
+++..-. | ..+.-+.++++..++.++|+|.||++++.. ..+ .+.. -+.+ .
T Consensus 740 --ELLNMYV---G------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 740 --ELLNMYV---G------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred --HHHHHHh---c------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 3333222 1 112345677787878899999999998651 111 1111 1112 2
Q ss_pred CCCeEEEEeecchhhh----hccCCceeeEEccCCCHHHHHHHHHHhh---CCCCCCCchHHHHHHHHHHcCC
Q 044858 277 NGGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDKEAWSLFKKMT---GDCIENGELKSVVTEVVKECAG 342 (426)
Q Consensus 277 ~~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~---~~~~~~~~~~~~~~~i~~~c~G 342 (426)
..+.-||=.|...+.. -+...-.+.+.+++=+++++..=..+.. +.-..+-+ ..+|+++|.-
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp~ 877 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCPP 877 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCCc
Confidence 2333444445444332 1223334677788777666655443332 22222333 3456667753
No 183
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.20 E-value=0.0011 Score=66.95 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
.-++..++|++|.||||||+.+++... | .++=+++|...+...+-..|...+....-.. ..+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 347899999999999999999998754 2 3667888888888877777765543221100 125
Q ss_pred CeEEEEEeCCCCc
Q 044858 251 TKILIILDDIWGS 263 (426)
Q Consensus 251 k~~LlVlDdv~~~ 263 (426)
++..||+|+++-.
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7889999999754
No 184
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.012 Score=57.60 Aligned_cols=158 Identities=19% Similarity=0.290 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHH---HHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVR---AWRLLEQL 247 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~---~~~l~~~l 247 (426)
....+.+.|++|+|||+||..+..... |+-+--++ ++++ .| .++... +...++-.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiS------pe~m-------iG-----~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIIS------PEDM-------IG-----LSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeC------hHHc-------cC-----ccHHHHHHHHHHHHHHh
Confidence 455678999999999999999987644 55332221 1111 01 111112 22223222
Q ss_pred hcCCeEEEEEeCCCCccChhhhcCCC---------------CCCCCCeEEEEeecchhhhhc--cCC-ceeeEEccCCCH
Q 044858 248 KKETKILIILDDIWGSLDLEAIGIPL---------------ADDNGGCKVLLTARSQDVLSC--EMD-CQQNFVVDVLND 309 (426)
Q Consensus 248 ~~~k~~LlVlDdv~~~~~~~~l~~~l---------------~~~~~~s~iivTtr~~~va~~--~~~-~~~~~~l~~L~~ 309 (426)
-+..--+||+||+...-+|-.++..| |+.++.--|+-||....+... ... -...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 23345799999998777766554432 233333335556666665421 111 235788888876
Q ss_pred -HHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 310 -KEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 310 -~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
++..+.++..- ...+.+.+.++++...+| +-..|+.+..++
T Consensus 675 ~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 77777776542 122344556666777666 223344444444
No 185
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.19 E-value=0.0017 Score=61.22 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=26.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
..+..+.|+|++|+|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999987653
No 186
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.18 E-value=0.02 Score=57.88 Aligned_cols=201 Identities=14% Similarity=0.090 Sum_probs=119.5
Q ss_pred ccccchHHHHHHHHHHhc----c-CCccEEEEEcCCCCcHHHHHHHHHHHhh---hcCccce--EEEEEecCCcCHHHHH
Q 044858 151 MHFESRKSTLKGILDALS----N-RNFNMIGVYGMGGIGKTTLVKEVGRQAK---ENNLFEK--VISSRVSQTPQIKEIQ 220 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f~~--~~wv~v~~~~~~~~il 220 (426)
..+-+|+.+..+|-..+. + +.-..+-|.|.+|+|||..+..|.+... .++.-.. .+.++.-.-.++.++.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 446689999998888775 3 3344889999999999999999998654 1121222 3344444555789999
Q ss_pred HHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCccC--hhhhcCCC-CCCCCCeEEEEeecchh--h
Q 044858 221 REIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGSLD--LEAIGIPL-ADDNGGCKVLLTARSQD--V 291 (426)
Q Consensus 221 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~~--~~~l~~~l-~~~~~~s~iivTtr~~~--v 291 (426)
..|..++....... ...+..+..++. ..+.++|++|+++..-. -+-+...| +...++|+++|.+=... .
T Consensus 476 ~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 476 EKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 99999886543221 122233333332 24678999999865422 11122222 13445777766543221 1
Q ss_pred hhc-------cCCceeeEEccCCCHHHHHHHHHHhhCCC--CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 292 LSC-------EMDCQQNFVVDVLNDKEAWSLFKKMTGDC--IENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 292 a~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
... ..-....+...|-+.++-.++...++.+. ..+...+-+++.++...|..-.|+...-+.
T Consensus 554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 100 01123567888889988888888777532 233344556666666666666665555433
No 187
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.013 Score=56.40 Aligned_cols=166 Identities=15% Similarity=0.186 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
+=-.++||+|.||||+...+++... |+..- ...+...+-.+ ++.++ ..- ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d-Lr~LL--------------------~~t--~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD-LRHLL--------------------LAT--PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH-HHHHH--------------------HhC--CCC
Confidence 3457999999999999999999875 44321 12222111111 22222 222 346
Q ss_pred EEEEEeCCCCccC--------------------hhhhcCCC---CCCCCCeEEE-Eeecchhhh----hccCCceeeEEc
Q 044858 253 ILIILDDIWGSLD--------------------LEAIGIPL---ADDNGGCKVL-LTARSQDVL----SCEMDCQQNFVV 304 (426)
Q Consensus 253 ~LlVlDdv~~~~~--------------------~~~l~~~l---~~~~~~s~ii-vTtr~~~va----~~~~~~~~~~~l 304 (426)
-+|||.|++...+ +.-|...+ ...+.+=||| .||....-. -++..-...+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 7888888764311 01111111 1112233555 466554322 122233467889
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh-hcC-C-HHHHHHHHHHHh
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL-KNK-S-PYEWRNALRQLK 370 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l-~~~-~-~~~w~~~l~~l~ 370 (426)
.-=+.+....||.+.++...+.+ +..+|.+...|.-+.=..++..| .++ + ....+.+.+.+.
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALE 432 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999999987543222 45556666666655555565555 454 2 223344444443
No 188
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.16 E-value=0.00068 Score=64.04 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 152 HFESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.++|-++.++++++++. +.+.+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999886 234578999999999999999999988754
No 189
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.0028 Score=57.72 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
+..-+.++|++|+|||.||..+.+... +..+ .+.+++ ..++..++....... ....++.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~-------~~~~~l~~~l~-- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG-------RLEEKLLRELK-- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC-------chHHHHHHHhh--
Confidence 556799999999999999999999987 3323 344443 456777776654320 11223344343
Q ss_pred CeEEEEEeCCCCc
Q 044858 251 TKILIILDDIWGS 263 (426)
Q Consensus 251 k~~LlVlDdv~~~ 263 (426)
+-=||||||+-..
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 3459999999643
No 190
>PRK09183 transposase/IS protein; Provisional
Probab=97.16 E-value=0.0012 Score=60.44 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..+.|+|++|+|||+||..+......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999876543
No 191
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0027 Score=60.77 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=54.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
..++.++|+.|+||||++..+............+..++... .....+-++...+.++.+.............+..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 46899999999999999999988764321123455555332 224455666667777766543332222334444443
Q ss_pred CeEEEEEeCCCC
Q 044858 251 TKILIILDDIWG 262 (426)
Q Consensus 251 k~~LlVlDdv~~ 262 (426)
++-++++|..-.
T Consensus 215 ~~DlVLIDTaG~ 226 (374)
T PRK14722 215 NKHMVLIDTIGM 226 (374)
T ss_pred CCCEEEEcCCCC
Confidence 245677998853
No 192
>PRK06696 uridine kinase; Validated
Probab=97.14 E-value=0.00078 Score=60.34 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 155 SRKSTLKGILDALS---NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 155 gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|.+.+++|.+.+. .+++.+|+|.|.+|+||||||+.+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35666677777664 456789999999999999999999988754
No 193
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0035 Score=55.07 Aligned_cols=115 Identities=15% Similarity=0.218 Sum_probs=68.6
Q ss_pred CcccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
+...++|-+...+.+++.-. .....-|.+||-.|+|||+|++.+.+....+ .-..+-| ...
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV--~k~----------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRLVEV--DKE----------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeEEEE--cHH-----------
Confidence 44567787777777665432 3334468899999999999999999988754 2222222 211
Q ss_pred HHhCCCccccCcHHHHHHHHHHHh-cCCeEEEEEeCCCCc---cChhhhcCCCCCC---CCCeEEEEeecch
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLK-KETKILIILDDIWGS---LDLEAIGIPLADD---NGGCKVLLTARSQ 289 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~---~~~~~l~~~l~~~---~~~s~iivTtr~~ 289 (426)
+...+-.+.+.|+ ...||+|..||+.-. +....++..+-.+ .+..-++..|.+.
T Consensus 123 -----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112223344443 257899999999533 3456666555322 3444455555554
No 194
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.12 E-value=0.0026 Score=57.01 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC----ccceEEEEEecCCcCHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQ 220 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~il 220 (426)
-.++.|+|++|+|||+|+.++.......+ .=..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 46899999999999999999976653221 01457888887777665543
No 195
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.12 E-value=0.0026 Score=59.55 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=52.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcc------ccCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID------QESESVRAWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~------~~~~~~~~~~l~~ 245 (426)
-+++-|+|++|+||||||.++....... -..++|++....++.. .+++++.+.+ ..........+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999987766533 3456788777666543 3455554322 1122222333333
Q ss_pred HHhcCCeEEEEEeCCC
Q 044858 246 QLKKETKILIILDDIW 261 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~ 261 (426)
.+.++..-+||+|.+-
T Consensus 128 li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVA 143 (321)
T ss_pred HhhccCCcEEEEcchh
Confidence 3344567799999985
No 196
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.11 E-value=0.0023 Score=68.49 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=57.3
Q ss_pred ccccchHHHHHHHHHHhc-------cC-C-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHH
Q 044858 151 MHFESRKSTLKGILDALS-------NR-N-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~-------~~-~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~ 221 (426)
..++|.+..+..+...+. ++ + ...+.++|+.|+|||+||+.+.+..-.. -...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 346788888888777664 12 1 2356789999999999999998765321 122334444432221111
Q ss_pred HHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 222 EIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
..-++.+..... ......+.+.+......+++||+++..
T Consensus 585 --~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECChhhC
Confidence 111222211100 011123445555433469999999754
No 197
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.10 E-value=0.0019 Score=55.48 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEE
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISS 208 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 208 (426)
+..+|.+.|+.|+||||+|+.+++..... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45689999999999999999999887643 4444444
No 198
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.10 E-value=0.0028 Score=59.52 Aligned_cols=89 Identities=25% Similarity=0.220 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc----CccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc----------Cc-
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE----------SE- 236 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~----------~~- 236 (426)
-.++-|+|++|+|||+|+.+++-..... ..-..++|++....+++.++. ++++.++.+.+.. +.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 3678899999999999999876433211 112368899999988888865 4566666542210 11
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 237 --SVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 237 --~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
...+..+...+.+.+.-|||+|.+.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 1222333344444456689999985
No 199
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.09 E-value=0.0045 Score=55.63 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
+++.+++|.|+.|+|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 557799999999999999999999887653
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.00071 Score=58.93 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc---cCcHHHHHHHHHHHhc
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ---ESESVRAWRLLEQLKK 249 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 249 (426)
.++.|+|+.|.||||++..+..+.... ...++.+. ..++.......++.+++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999998877543 22233331 2212222234455666543332 111222222222 33
Q ss_pred CCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchh
Q 044858 250 ETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQD 290 (426)
Q Consensus 250 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~ 290 (426)
++.-+||+|.+.-. ++...+...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34458999999643 2122222221 235778999998854
No 201
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.07 E-value=0.0051 Score=51.63 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
++.|+|++|+||||++..+....... -..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 36899999999999999998877542 3456777766544
No 202
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.05 E-value=0.0053 Score=55.16 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc---------------c--
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ---------------E-- 234 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~---------------~-- 234 (426)
..++.|.|+.|+|||||+.++......++ ..+++++ ...+..++++.+ .+++...+. .
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~--~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVS--TQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEe--CCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccC
Confidence 35899999999999999877766543222 3455665 333556666666 344432210 0
Q ss_pred --CcHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 044858 235 --SESVRAWRLLEQLKKETKILIILDDIWG 262 (426)
Q Consensus 235 --~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 262 (426)
.....+..+.+.....++-++|+|.+-.
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~ 128 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSS 128 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccH
Confidence 0122233344443333567899999853
No 203
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.008 Score=60.70 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=83.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
.++.+.++|++|.|||.||+.+.+..... | +.+... +++..- - ......+..++....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~----~l~sk~--------v-Gesek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS----ELLSKW--------V-GESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH----HHhccc--------c-chHHHHHHHHHHHHHcC
Confidence 45678999999999999999999965533 3 222211 111100 0 11122344555555556
Q ss_pred CeEEEEEeCCCCccChh-------------hhcCCCC--CCCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHH
Q 044858 251 TKILIILDDIWGSLDLE-------------AIGIPLA--DDNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKE 311 (426)
Q Consensus 251 k~~LlVlDdv~~~~~~~-------------~l~~~l~--~~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e 311 (426)
.+++|++|+++....+. .+...+. ....+..||-||-...... ....-...+.+.+=+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999997542211 1211221 1223334444554443221 111334688888889999
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCC
Q 044858 312 AWSLFKKMTGDCIENGELKSVVTEVVKECAG 342 (426)
Q Consensus 312 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G 342 (426)
..+.|+.........-...-..+.+++.+.|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999886333221112223445555555
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.006 Score=55.07 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=47.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
...+.++|.+|+|||+|+..+.+.....+ ..+++++ ..+++..+...... ... ....+++.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it------~~~l~~~l~~~~~~--~~~----~~~~~l~~l~--~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT------VADIMSAMKDTFSN--SET----SEEQLLNDLS--N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE------HHHHHHHHHHHHhh--ccc----cHHHHHHHhc--c
Confidence 35788999999999999999999876532 3445553 45566555544321 111 1223444554 3
Q ss_pred eEEEEEeCCCCc
Q 044858 252 KILIILDDIWGS 263 (426)
Q Consensus 252 ~~LlVlDdv~~~ 263 (426)
.=+|||||+...
T Consensus 163 ~dlLvIDDig~~ 174 (244)
T PRK07952 163 VDLLVIDEIGVQ 174 (244)
T ss_pred CCEEEEeCCCCC
Confidence 458899999643
No 205
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.009 Score=56.51 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecchh-hhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCC
Q 044858 250 ETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQD-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIEN 326 (426)
Q Consensus 250 ~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 326 (426)
+++-++++|++...+ .-+.+...+..-..++.+|++|.+.. +.....+....+.+.+++.++..+.+.+. + . +
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~--~-~ 187 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-G--V-A 187 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-C--C-C
Confidence 344455667776542 22222222211123455777776643 43323344578999999999998888653 1 1 1
Q ss_pred CchHHHHHHHHHHcCCchHHH
Q 044858 327 GELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 327 ~~~~~~~~~i~~~c~GlPlai 347 (426)
.. . ..+..++|-|+..
T Consensus 188 ~~-~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLFD 203 (325)
T ss_pred cH-H----HHHHHhCCChhhh
Confidence 11 1 1235678888643
No 206
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.03 E-value=0.0035 Score=58.82 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=52.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc------cCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ------ESESVRAWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (426)
-+++-|+|++|+||||||.+++...... -..++|++....+++. .+++++.+.+. .+.......+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4688899999999999999988765433 3457788887766653 34445443211 111222223333
Q ss_pred HHhcCCeEEEEEeCCC
Q 044858 246 QLKKETKILIILDDIW 261 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~ 261 (426)
.+.++..-+||+|.+-
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3344567799999975
No 207
>PRK09354 recA recombinase A; Provisional
Probab=97.02 E-value=0.0039 Score=58.95 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc------cCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ------ESESVRAWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (426)
-+++-|+|++|+|||||+.++....... -..++|++....++.. .+++++...+. .+.......+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4688999999999999999988765533 3567899888777753 45555543221 122222223333
Q ss_pred HHhcCCeEEEEEeCCC
Q 044858 246 QLKKETKILIILDDIW 261 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~ 261 (426)
.+.++..-+||+|.+-
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 3345567799999985
No 208
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.02 E-value=0.0035 Score=56.22 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEI 219 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i 219 (426)
-.++.|+|++|+|||+++.++....... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4689999999999999999998776543 3567888887 5555443
No 209
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.02 E-value=0.0046 Score=62.04 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=40.0
Q ss_pred cccchHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe
Q 044858 152 HFESRKSTLKGILDALSN-----RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV 210 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 210 (426)
++.-..+-++++..||.+ ...+++.++||+|+||||.++.+++... |+.+-|.+-
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 344445566777777762 2356899999999999999999998864 666667643
No 210
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.00 E-value=0.0067 Score=55.39 Aligned_cols=88 Identities=26% Similarity=0.296 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc----CccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-------------cC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-------------ES 235 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-------------~~ 235 (426)
.+.=|+|++|+|||.|+.+++-..... +.-..++|++-...++...+. +|++..+...+. ..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 578899999999999999887553321 122368999999999887765 566665432211 01
Q ss_pred cHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 236 ESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 236 ~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
....+..+...+.+.+--|||+|.+-
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHhhccccceEEEEecchH
Confidence 11223333344444566799999984
No 211
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.97 E-value=0.0047 Score=58.56 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=56.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh---c-CccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc---------CcHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE---N-NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE---------SESV 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~---------~~~~ 238 (426)
-.++-|+|++|+|||+|+.+++-.... . +.-..++|++....|++.++.+ +++.++.+.+.. ...+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 357889999999999999998643321 1 1124689999999999888654 566666542210 1111
Q ss_pred ----HHHHHHHHHhcCCeEEEEEeCCC
Q 044858 239 ----RAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 239 ----~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
.+..+...+.+.+--|||+|.+-
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 22233333434455689999984
No 212
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.0032 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
-..+.|+|++|.|||||.+.+|...+.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 357899999999999999999988764
No 213
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.94 E-value=0.0094 Score=54.43 Aligned_cols=89 Identities=20% Similarity=0.331 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHH------
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESV------ 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~------ 238 (426)
+-+.|.|.+|+|||||+.++++....+ +-+.++++-+.+.. .+.++..++...-... ...++...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999999988754 12345666666554 5566666665432111 11111111
Q ss_pred HHHHHHHHHh-c-CCeEEEEEeCCCC
Q 044858 239 RAWRLLEQLK-K-ETKILIILDDIWG 262 (426)
Q Consensus 239 ~~~~l~~~l~-~-~k~~LlVlDdv~~ 262 (426)
....+-+++. + ++++|+++||+-.
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223444443 3 7999999999853
No 214
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.93 E-value=0.0079 Score=54.37 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
..++.|.|++|+|||++|.++......+ -...+|++... ++.++.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 4689999999999999999977654322 44577877654 455555553
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.012 Score=56.40 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
++++|+++|++|+||||++..+......++ + .+..++..... ...+-++...+.++.+.....+...+...+..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999987765332 2 33344443221 12223344444555554322333333444444442
Q ss_pred C-CeEEEEEeCCC
Q 044858 250 E-TKILIILDDIW 261 (426)
Q Consensus 250 ~-k~~LlVlDdv~ 261 (426)
. +.=+|++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1 22477788764
No 216
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.92 E-value=0.0073 Score=57.00 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=41.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC----ccceEEEEEecCCcCHHHHHHHHHHHhCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQREIAEKLGL 229 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~il~~i~~~l~~ 229 (426)
..++-|+|++|+|||+++.+++....... .-..++|++....++..++. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46889999999999999999976643210 01268899998888877654 44555544
No 217
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.91 E-value=0.0077 Score=57.03 Aligned_cols=89 Identities=25% Similarity=0.287 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceEEEEEecCCcCHHHHHHHHHHHhCCCccc----------cCc-
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ----------ESE- 236 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~----------~~~- 236 (426)
..++-|+|++|+|||+++.+++........ =..++|++....+++..+. ++++.++...+. .+.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~~ 180 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNSD 180 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCHH
Confidence 468889999999999999999866432111 1368899998888877765 444555432211 000
Q ss_pred --HHHHHHHHHHHhc-CCeEEEEEeCCC
Q 044858 237 --SVRAWRLLEQLKK-ETKILIILDDIW 261 (426)
Q Consensus 237 --~~~~~~l~~~l~~-~k~~LlVlDdv~ 261 (426)
...+..+...+.. .+--|||+|.+-
T Consensus 181 ~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 181 HQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHhccCceeEEEEECch
Confidence 1122333333433 344589999874
No 218
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.86 E-value=0.0017 Score=68.51 Aligned_cols=184 Identities=17% Similarity=0.170 Sum_probs=87.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh-hhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCc------cc-cCcHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA-KENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKI------DQ-ESESVRAWR 242 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~------~~-~~~~~~~~~ 242 (426)
+..++.|+|+.|.||||+.+.+.-.. ..+.. ++|.+..... -.++.++...++... .. .........
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34689999999999999999987652 11110 0111111000 000111111111000 00 001111222
Q ss_pred HHHHHhcCCeEEEEEeCCCCccChh---hh----cCCCCCCCCCeEEEEeecchhhhhccCC--ceeeEEccCCCHHHHH
Q 044858 243 LLEQLKKETKILIILDDIWGSLDLE---AI----GIPLADDNGGCKVLLTARSQDVLSCEMD--CQQNFVVDVLNDKEAW 313 (426)
Q Consensus 243 l~~~l~~~k~~LlVlDdv~~~~~~~---~l----~~~l~~~~~~s~iivTtr~~~va~~~~~--~~~~~~l~~L~~~e~~ 313 (426)
+...+ ..+-|+++|++-...+.. .+ ...+ ...|+.+|+||........... ......+. ++.+ ..
T Consensus 396 il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l 469 (771)
T TIGR01069 396 ILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TL 469 (771)
T ss_pred HHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CC
Confidence 33322 368999999997553321 12 1122 1347889999998766421111 11111111 1111 11
Q ss_pred HHHHHhh-CCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 044858 314 SLFKKMT-GDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLKR 371 (426)
Q Consensus 314 ~Lf~~~~-~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~l~~l~~ 371 (426)
. |...+ .+... ...+-.|++++ |+|-.|..-|..+......+++.++..+..
T Consensus 470 ~-p~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 470 S-PTYKLLKGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred c-eEEEECCCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 11111 11111 23566777777 899998888888875555566666666543
No 219
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.86 E-value=0.02 Score=47.19 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 044858 5 ISVTAKVAEYLVAPIIRQFTYCCSYNTNLEKLKNELEKLKIARASVQYKVDDSRIKGDGIQQPVEEWLITVDEAINEVET 84 (426)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~l~~~~yd~ed 84 (426)
+++++.+++.+...+.+...-...+...++.+...++.|......|.. .+...+..-+.-++++.+...++++
T Consensus 8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~-------~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDK-------LNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHH-------HhhhcCCchhHHHHHHHHHHHHHHH
Confidence 344556666666666555555455555555566666555555555444 3333344446778999999999999
Q ss_pred HHhhhhhhhcccccccCCChHHHhHHHHHHHHHHHHHHHh
Q 044858 85 LIADKEKSNNRCLKGLCPNLKTRYQLSKKAEREANAIVGL 124 (426)
Q Consensus 85 ~ld~~~~~~~~~~~~~~~~~~~r~~~~~~i~~l~~~l~~~ 124 (426)
+++.+.... ++++...++.+++|+++.+.+...
T Consensus 81 LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 81 LVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 998765433 355667788899999988888776
No 220
>PHA02244 ATPase-like protein
Probab=96.86 E-value=0.0062 Score=57.75 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 161 KGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 161 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+..++..+. -|.|+|++|+|||+||+.+++...
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445544433 367899999999999999998754
No 221
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.86 E-value=0.0081 Score=55.11 Aligned_cols=117 Identities=22% Similarity=0.278 Sum_probs=63.3
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEE---ecCCcCHHHHHHHHH--HHh--CCCccccCcHHHHH
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSR---VSQTPQIKEIQREIA--EKL--GLKIDQESESVRAW 241 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---v~~~~~~~~il~~i~--~~l--~~~~~~~~~~~~~~ 241 (426)
++....+.|.|+.|+|||||.+.+....... ...+++. +.......++...+. .|. +...+..+......
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHH
Confidence 3445689999999999999999999776532 2222321 111111122221110 010 00001111111122
Q ss_pred HHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 242 RLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 242 ~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
.+...+..-.+-++++|++...+.+..+...+ ..|..+|+||.+..+
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 34444443468899999997766565554443 247789999987655
No 222
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0063 Score=57.73 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc--CcHHHHHHHHHHHhcC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE--SESVRAWRLLEQLKKE 250 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 250 (426)
.+|.|-|.+|+|||||.-++..+...+. .++||+-.+ +..++ +--+..++.+.+.. -....++.+.+.+.+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 6899999999999999999999987653 566665443 33332 22244566444321 1223455677777778
Q ss_pred CeEEEEEeCCCC
Q 044858 251 TKILIILDDIWG 262 (426)
Q Consensus 251 k~~LlVlDdv~~ 262 (426)
++-++|+|-+..
T Consensus 168 ~p~lvVIDSIQT 179 (456)
T COG1066 168 KPDLVVIDSIQT 179 (456)
T ss_pred CCCEEEEeccce
Confidence 899999999854
No 223
>PTZ00494 tuzin-like protein; Provisional
Probab=96.85 E-value=0.11 Score=50.25 Aligned_cols=165 Identities=11% Similarity=0.162 Sum_probs=98.3
Q ss_pred cCCcccccchHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 147 TQDFMHFESRKSTLKGILDALS---NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 147 ~~~~~~~~gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
+.....++.|+.+-..+.+.|. ...++++++.|..|.||++|.+......... .++|.+... ++-++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHH
Confidence 3445668888777555555443 5678999999999999999999988765542 567777755 4567888
Q ss_pred HHHhCCCccc-cCc-HHHHHHHHHHH---hcCCeEEEEEeCCCCccChhhh---cCCCCCCCCCeEEEEeecchhhh--h
Q 044858 224 AEKLGLKIDQ-ESE-SVRAWRLLEQL---KKETKILIILDDIWGSLDLEAI---GIPLADDNGGCKVLLTARSQDVL--S 293 (426)
Q Consensus 224 ~~~l~~~~~~-~~~-~~~~~~l~~~l---~~~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~~s~iivTtr~~~va--~ 293 (426)
.+.++.+.-+ ..+ .+.+..-...- .+++.-+||+- +.+...+..+ ...|.....-|.|++---.+..- .
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 8899876432 222 22222222111 23444455542 1222222111 01233344567777755444331 1
Q ss_pred ccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 294 CEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 294 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
........|.+++|+..++.++-.+.+
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 123344678999999999999887765
No 224
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.85 E-value=0.0078 Score=55.71 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.+.+|+|.|+.|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988766554
No 225
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.84 E-value=0.0063 Score=52.06 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCC
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGL 229 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~ 229 (426)
++.++|++|+||||++..+.......+ + .++.++... .....+.+.......+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g-~-~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG-K-KVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 678999999999999999988766431 2 233344322 22333444444555443
No 226
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0065 Score=58.73 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
..++.++|++|+||||++..+.........+ .+..++... .....+.++..++.++.+.... .....+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 4689999999999999999998765322222 222333221 1122334444455555543221 1223444444332
Q ss_pred CeEEEEEeCC
Q 044858 251 TKILIILDDI 260 (426)
Q Consensus 251 k~~LlVlDdv 260 (426)
..=+|++|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3346888843
No 227
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0017 Score=53.37 Aligned_cols=46 Identities=28% Similarity=0.472 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcc
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID 232 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~ 232 (426)
+|.|.|++|+||||+|+.+.+...-. .+ +...+++++++..+.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999887643 11 345788999998887643
No 228
>PRK06921 hypothetical protein; Provisional
Probab=96.82 E-value=0.0074 Score=55.45 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=44.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
....+.++|..|+|||.|+..+++....+. ...++|++. .+++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 356789999999999999999999876431 233556553 33344433221 11122334443
Q ss_pred CeEEEEEeCCC
Q 044858 251 TKILIILDDIW 261 (426)
Q Consensus 251 k~~LlVlDdv~ 261 (426)
+-=||||||+.
T Consensus 177 ~~dlLiIDDl~ 187 (266)
T PRK06921 177 KVEVLFIDDLF 187 (266)
T ss_pred CCCEEEEeccc
Confidence 34599999993
No 229
>PTZ00035 Rad51 protein; Provisional
Probab=96.81 E-value=0.0091 Score=56.78 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh---c-CccceEEEEEecCCcCHHHHHHHHHHHhCCCccc----------cCc-
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE---N-NLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ----------ESE- 236 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~----------~~~- 236 (426)
-.++.|+|++|+|||+|+.+++-.... . ..-..++|++....+++.+ +.++++.++..... .+.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 468899999999999999998754331 0 1123567998888777776 44456655543210 011
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEeCCCC
Q 044858 237 --SVRAWRLLEQLKKETKILIILDDIWG 262 (426)
Q Consensus 237 --~~~~~~l~~~l~~~k~~LlVlDdv~~ 262 (426)
...+..+...+...+--|||+|.+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 11222233334445567999999853
No 230
>PRK06547 hypothetical protein; Provisional
Probab=96.81 E-value=0.002 Score=55.04 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 163 ILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 163 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+...+......+|.|.|++|+||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444566778999999999999999999988643
No 231
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.78 E-value=0.0085 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|+|.|+.|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 232
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0097 Score=53.04 Aligned_cols=93 Identities=19% Similarity=0.299 Sum_probs=59.8
Q ss_pred CcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 149 DFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
.+.++-|..++++++.+-.. -+.++-|.++|++|.|||-+|+.|.|+.... | +.|-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig--- 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG--- 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh---
Confidence 45566778888887766543 1345678899999999999999999876532 3 32211
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
.++.+... + .....+..+++.....|-|+|+||+++
T Consensus 245 -selvqkyv---g------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 -SELVQKYV---G------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred -HHHHHHHh---h------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 11221111 1 112345566666666788999999985
No 233
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.0075 Score=53.73 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=31.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
-.++.|.|++|+||||++.++....... -..++|++....++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 4688999999999999999998776432 33567777655443
No 234
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.78 E-value=0.12 Score=50.51 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+.+|.++|+.|+||||++..+......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999876653
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.0039 Score=58.91 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
..+.++|+.|+|||.||..+.+....++ ..++++++ .+++..+...-. +...+ ....++.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~------~~l~~~l~~~~~---~~~~~---~~~~~~~l~~--~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA------DELIEILREIRF---NNDKE---LEEVYDLLIN--C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH------HHHHHHHHHHHh---ccchh---HHHHHHHhcc--C
Confidence 6799999999999999999999876542 24556554 334444432211 11111 1112344432 3
Q ss_pred EEEEEeCCCCc--cChhh--hcCCCCC-CCCCeEEEEeecch
Q 044858 253 ILIILDDIWGS--LDLEA--IGIPLAD-DNGGCKVLLTARSQ 289 (426)
Q Consensus 253 ~LlVlDdv~~~--~~~~~--l~~~l~~-~~~~s~iivTtr~~ 289 (426)
=||||||+... ..|.. +...+.. ...+-.+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 48999999543 23322 2222211 12244588888653
No 236
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.77 E-value=0.0073 Score=52.26 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
++.|.|++|+|||+|+.++....... -..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999987765432 23466776543 45555444
No 237
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.76 E-value=0.021 Score=54.52 Aligned_cols=99 Identities=22% Similarity=0.242 Sum_probs=58.4
Q ss_pred HHHHHHHhccC----CccEEEEEcCCCCcHHH-HHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCCccc
Q 044858 160 LKGILDALSNR----NFNMIGVYGMGGIGKTT-LVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDQ 233 (426)
Q Consensus 160 ~~~l~~~l~~~----~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~~~~ 233 (426)
...+..++.++ +.++|+++|+.|+|||| ||+....-....+ =..+..++..... ...+=++..++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 34444454443 46899999999999995 4544444331211 2345566554322 3444556667777877766
Q ss_pred cCcHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 234 ESESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 234 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
..+...+......+.. .=+|.+|-+-
T Consensus 266 v~~~~el~~ai~~l~~--~d~ILVDTaG 291 (407)
T COG1419 266 VYSPKELAEAIEALRD--CDVILVDTAG 291 (407)
T ss_pred ecCHHHHHHHHHHhhc--CCEEEEeCCC
Confidence 5555556666666653 2466667664
No 238
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.75 E-value=0.0085 Score=56.46 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh---cC-ccceEEEEEecCCcCHHHHHHHHHHHhCCCccc----------cCcH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE---NN-LFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ----------ESES 237 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~----------~~~~ 237 (426)
..++.|+|++|+|||+|+.+++..... .+ .-..++|++....++..+ +.++++.++..... .+..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCChH
Confidence 468899999999999999998753221 11 123578999888878776 34455555443211 0111
Q ss_pred ---HHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 238 ---VRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 238 ---~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
..+..+...+...+.-|||+|.+-
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECcH
Confidence 122223333334456789999874
No 239
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.015 Score=55.49 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
+.+++.++|+.|+||||++..+......++ ..+.+++..... ...+-++...+.++.+.....+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 357899999999999999999987664432 345566654322 23445666667676654333333344444555542
Q ss_pred -CCeEEEEEeCCCC
Q 044858 250 -ETKILIILDDIWG 262 (426)
Q Consensus 250 -~k~~LlVlDdv~~ 262 (426)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 2345788888743
No 240
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.72 E-value=0.0021 Score=64.12 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=41.8
Q ss_pred cccccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 150 FMHFESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+.+++|-++.++.+++.+. +.+.+++.++||+|+||||||+.+.+-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4468899999999999883 456689999999999999999999987654
No 241
>PRK04328 hypothetical protein; Provisional
Probab=96.72 E-value=0.011 Score=53.92 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 213 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 213 (426)
.-.++.|.|++|+|||+|+.++......+ -...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 34689999999999999999987664322 345678877653
No 242
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.71 E-value=0.0081 Score=57.04 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh---cC-ccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc---------CcHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE---NN-LFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE---------SESV 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~---------~~~~ 238 (426)
-.++-|+|++|+|||+|+..++-.... .+ .-..++|++....+++.++ .+|++.++...+.. ...+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 467889999999999999988754321 11 1126899999999988776 45666665433210 1111
Q ss_pred H----HHHHHHHHhcCCeEEEEEeCCC
Q 044858 239 R----AWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 239 ~----~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
. +..+...+...+.-|||+|.+-
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 1 2222223344456789999874
No 243
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.70 E-value=0.051 Score=57.25 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=35.5
Q ss_pred cccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 150 FMHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3457888777777665544 22334588999999999999999988654
No 244
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.69 E-value=0.0041 Score=51.06 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=31.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHH
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~ 221 (426)
|.++|++|+|||+||+.+++.... ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccccccee
Confidence 679999999999999999988732 234567777777777654
No 245
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.67 E-value=0.0032 Score=55.25 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=56.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHH-HHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIK-EIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~-~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
.+|.|+|+.|+||||++..+....... ....++. +..+.... .-...+..+-.... ........+...+.. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~vg~---~~~~~~~~i~~aLr~-~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREVGL---DTLSFENALKAALRQ-D 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeecccCC---CccCHHHHHHHHhcC-C
Confidence 478999999999999999887765432 2233332 21111100 00001111111111 111122334444543 4
Q ss_pred eEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhh
Q 044858 252 KILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVL 292 (426)
Q Consensus 252 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va 292 (426)
+=++++|++.+.+....+... ...|..++.|+....+.
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 679999999877655443222 12355577777766543
No 246
>PRK07667 uridine kinase; Provisional
Probab=96.66 E-value=0.0029 Score=55.23 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=28.5
Q ss_pred HHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 162 GILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 162 ~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+.+.+. .++..+|+|.|.+|+||||+|+.+......
T Consensus 5 ~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 5 ELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444443 344579999999999999999999987754
No 247
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.66 E-value=0.0093 Score=49.87 Aligned_cols=117 Identities=21% Similarity=0.182 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEE--EEEecCCcCHHHHHHHHH----HHhCCC--ccccCcHH------
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVI--SSRVSQTPQIKEIQREIA----EKLGLK--IDQESESV------ 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~--wv~v~~~~~~~~il~~i~----~~l~~~--~~~~~~~~------ 238 (426)
..|-|++..|.||||+|.-..-+....+ +...+ |+..........+++.+- .+.+.. ....+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHH
Confidence 4678888889999999998887765432 33222 233222344444444431 000110 00011111
Q ss_pred -HHHHHHHHHhcCCeEEEEEeCCCCc-----cChhhhcCCCCCCCCCeEEEEeecchh
Q 044858 239 -RAWRLLEQLKKETKILIILDDIWGS-----LDLEAIGIPLADDNGGCKVLLTARSQD 290 (426)
Q Consensus 239 -~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~iivTtr~~~ 290 (426)
......+.+..+.-=|||||++-.. ...+.+...+.....+.-+|+|.|+..
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333444455569999998533 233444444444445778999999965
No 248
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.66 E-value=0.017 Score=56.76 Aligned_cols=59 Identities=27% Similarity=0.380 Sum_probs=38.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKI 231 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~ 231 (426)
++.+|.++|+.|+||||++..++......+ + .+..++... .+...+.++.+..+++.+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 467899999999999999999998776532 2 333343322 1223455666667766543
No 249
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.66 E-value=0.025 Score=63.67 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
.++=|.++|++|+|||.||+.++.+..+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCc
Confidence 35568899999999999999999987653
No 250
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0027 Score=52.26 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN 200 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 200 (426)
.-|.|+|++|+||||++..+.+..+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4589999999999999999998887643
No 251
>PRK05439 pantothenate kinase; Provisional
Probab=96.66 E-value=0.016 Score=54.13 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=43.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH--HHHHhCCCccccCcHHHHHHHHHHH
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE--IAEKLGLKIDQESESVRAWRLLEQL 247 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~--i~~~l~~~~~~~~~~~~~~~l~~~l 247 (426)
+.+-+|+|.|.+|+||||+|+.+............+.-++...-......+.. ++..-+ .+..-+...+...+..+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHHHH
Confidence 45678999999999999999998876543211122334444433333322221 111111 12223444555666666
Q ss_pred hcCCe
Q 044858 248 KKETK 252 (426)
Q Consensus 248 ~~~k~ 252 (426)
..++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66654
No 252
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.66 E-value=0.0016 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~ 196 (426)
|.|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 253
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.65 E-value=0.021 Score=58.25 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=38.2
Q ss_pred CCcccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 148 QDFMHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.....++|....+.++.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 345678898888887777665 22234578999999999999999998654
No 254
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.64 E-value=0.003 Score=55.99 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478999999999999999998743
No 255
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.64 E-value=0.017 Score=52.04 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-----------------
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ----------------- 233 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~----------------- 233 (426)
...++.|.|.+|+|||+|+.++......+ -..++|++.... +.++.+++ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 34689999999999999999996554322 346778887654 45555553 334322110
Q ss_pred ----cCcHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 234 ----ESESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 234 ----~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
.........+.+.+.+.+.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112344455555554456789999975
No 256
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.013 Score=56.52 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=54.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcC--ccceEEEEEecCC-cCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENN--LFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDQESESVRAWRLLEQL 247 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l 247 (426)
.+.+|.++|+.|+||||.+..+........ .-..+..++.... ....+-++...+.++.+.........+...+..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 457899999999999999999987655321 1224445555432 1223336666666776654433333333333333
Q ss_pred hcCCeEEEEEeCCCC
Q 044858 248 KKETKILIILDDIWG 262 (426)
Q Consensus 248 ~~~k~~LlVlDdv~~ 262 (426)
.+.=++++|....
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 2345888998853
No 257
>PRK14974 cell division protein FtsY; Provisional
Probab=96.64 E-value=0.021 Score=54.03 Aligned_cols=90 Identities=26% Similarity=0.285 Sum_probs=50.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc--CHHHHHHHHHHHhCCCcccc----CcHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP--QIKEIQREIAEKLGLKIDQE----SESVRAWRLL 244 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~il~~i~~~l~~~~~~~----~~~~~~~~l~ 244 (426)
++.+|.++|+.|+||||++..++...... .+. ++.+.. ..+ ...+-++.....++.+.... +....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46799999999999999999888776543 232 333332 222 22334556667776543211 1112222222
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 044858 245 EQLKKETKILIILDDIWGS 263 (426)
Q Consensus 245 ~~l~~~k~~LlVlDdv~~~ 263 (426)
+.......=++++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222222238999988543
No 258
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.63 E-value=0.0071 Score=58.21 Aligned_cols=86 Identities=23% Similarity=0.275 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc--CcHHHHHHHHHHHhc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE--SESVRAWRLLEQLKK 249 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 249 (426)
-.++.|.|.+|+|||||+.++....... -..++|++... +..++. .-+..++...+.. .....+..+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 3589999999999999999998776543 24567776543 333332 2234555432221 011123455555555
Q ss_pred CCeEEEEEeCCCC
Q 044858 250 ETKILIILDDIWG 262 (426)
Q Consensus 250 ~k~~LlVlDdv~~ 262 (426)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5778999999853
No 259
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.63 E-value=0.025 Score=51.03 Aligned_cols=143 Identities=20% Similarity=0.176 Sum_probs=75.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-----CcCHHHHHHHHHHHhCCCccc-------cCcHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-----TPQIKEIQREIAEKLGLKIDQ-------ESESV 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-----~~~~~~il~~i~~~l~~~~~~-------~~~~~ 238 (426)
+-.+++|+|.+|+|||||++.+..-.+.. . ..++....+ .....+-..+++..++.+.+. .+...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--S-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--C-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999998776532 2 222222111 222334455666666644321 11111
Q ss_pred HHH-HHHHHHhcCCeEEEEEeCCCCccCh---hhhcCCCC--CCCCCeEEEEeecchhhhhccCCceeeEEccC-CCHHH
Q 044858 239 RAW-RLLEQLKKETKILIILDDIWGSLDL---EAIGIPLA--DDNGGCKVLLTARSQDVLSCEMDCQQNFVVDV-LNDKE 311 (426)
Q Consensus 239 ~~~-~l~~~l~~~k~~LlVlDdv~~~~~~---~~l~~~l~--~~~~~s~iivTtr~~~va~~~~~~~~~~~l~~-L~~~e 311 (426)
... .+.+.+ .-++-++|.|+.-+..+. ..+...+. ....|...+..|.+-.++........+..+.. .+...
T Consensus 115 rQRi~IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~ 193 (268)
T COG4608 115 RQRIGIARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193 (268)
T ss_pred hhhHHHHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecC
Confidence 222 223333 347899999998655332 11111111 12236678888888877643333333333333 23344
Q ss_pred HHHHHH
Q 044858 312 AWSLFK 317 (426)
Q Consensus 312 ~~~Lf~ 317 (426)
..++|.
T Consensus 194 ~~~~~~ 199 (268)
T COG4608 194 TEEVFS 199 (268)
T ss_pred HHHHhh
Confidence 445554
No 260
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.61 E-value=0.0059 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988653
No 261
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.61 E-value=0.011 Score=51.42 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCcc--------ceEEEEEecCCcCHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLF--------EKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.+..|.|++|+|||+++.++.........| ..++|++.... ..++.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 478899999999999999998876643333 24667766554 334444443
No 262
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.60 E-value=0.017 Score=56.51 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++.++.++|+.|+||||++..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999988887754
No 263
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.16 Score=47.45 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=88.9
Q ss_pred HHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHh--------hhcCccceEEEEEe-cCCcCHHHHHHHHHHHhCCCc
Q 044858 162 GILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQA--------KENNLFEKVISSRV-SQTPQIKEIQREIAEKLGLKI 231 (426)
Q Consensus 162 ~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~v-~~~~~~~~il~~i~~~l~~~~ 231 (426)
.+...+..++ .++..++|..|.||+++|..+.+.. ....|-+...++.. +...+..++. ++.+.+....
T Consensus 7 ~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~ 85 (299)
T PRK07132 7 FLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS 85 (299)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC
Confidence 3444444444 4567799999999999999998875 11222222333321 1222333322 2332221110
Q ss_pred cccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecc-hhhhhccCCceeeEEccCCC
Q 044858 232 DQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARS-QDVLSCEMDCQQNFVVDVLN 308 (426)
Q Consensus 232 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~~~~~~~~~l~~L~ 308 (426)
...+.+=++|+|++.... ..+.+...+..-..++.+|++|.+ ..+.....+....+++.+++
T Consensus 86 ---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~ 150 (299)
T PRK07132 86 ---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150 (299)
T ss_pred ---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence 011467788899986542 234444344333346666665543 44433234556899999999
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 044858 309 DKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIV 348 (426)
Q Consensus 309 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 348 (426)
+++..+.+... + .+ .+.+..++...+|.=-|+.
T Consensus 151 ~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~ 183 (299)
T PRK07132 151 QQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEK 183 (299)
T ss_pred HHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHH
Confidence 99998877654 1 11 1235556666666323443
No 264
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.59 E-value=0.0012 Score=54.20 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...|.|+|..|+||+++|+.++.....
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 345789999999999999999886553
No 265
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.59 E-value=0.0022 Score=56.10 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
||+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999988764
No 266
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.59 E-value=0.011 Score=50.36 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=46.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC-CeE
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE-TKI 253 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~ 253 (426)
+.|.|.+|+|||++|.++.... ....+++.-...++. ++.+.|.+.-..........+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999997651 235667766666653 355554442222222222222223344444221 234
Q ss_pred EEEEeCC
Q 044858 254 LIILDDI 260 (426)
Q Consensus 254 LlVlDdv 260 (426)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999987
No 267
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.59 E-value=0.024 Score=53.00 Aligned_cols=135 Identities=20% Similarity=0.295 Sum_probs=73.3
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHH-HHhhhcCccceEEE----EEecCCc---------CHHH
Q 044858 153 FESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVG-RQAKENNLFEKVIS----SRVSQTP---------QIKE 218 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~-~~~~~~~~f~~~~w----v~v~~~~---------~~~~ 218 (426)
+-+|..+-.--++.|.++....|.+.|.+|+|||.||-... ....++..|..++- +.++++. .+.-
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 44577777777888889999999999999999998886643 22223344554332 1222211 1111
Q ss_pred HHHHHHH---HhCCCccccCcHHHHHHHH----------HHHhcCC---eEEEEEeCCCCccChhhhcCCCCCCCCCeEE
Q 044858 219 IQREIAE---KLGLKIDQESESVRAWRLL----------EQLKKET---KILIILDDIWGSLDLEAIGIPLADDNGGCKV 282 (426)
Q Consensus 219 il~~i~~---~l~~~~~~~~~~~~~~~l~----------~~l~~~k---~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~i 282 (426)
.++.|.. .+..... .. ...+..+. .++ +|+ .-++++|+..+... ..++..+...+.||||
T Consensus 306 Wmq~i~DnLE~L~~~~~-~~-~~~l~~~l~~~~iev~alt~I-RGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKI 381 (436)
T COG1875 306 WMQAIFDNLEVLFSPNE-PG-DRALEEILSRGRIEVEALTYI-RGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKI 381 (436)
T ss_pred hHHHHHhHHHHHhcccc-cc-hHHHHHHHhccceeeeeeeee-cccccccceEEEehhhccCH-HHHHHHHHhccCCCEE
Confidence 2223322 2221111 11 11222211 111 122 35899999987632 2233334456789999
Q ss_pred EEeecchhh
Q 044858 283 LLTARSQDV 291 (426)
Q Consensus 283 ivTtr~~~v 291 (426)
+.|.-..++
T Consensus 382 Vl~gd~aQi 390 (436)
T COG1875 382 VLTGDPAQI 390 (436)
T ss_pred EEcCCHHHc
Confidence 998765543
No 268
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.013 Score=49.69 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...+.|.||+|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999876
No 269
>PRK10867 signal recognition particle protein; Provisional
Probab=96.58 E-value=0.016 Score=56.84 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..+.+|.++|++|+||||++..+......
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34679999999999999988888766543
No 270
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.58 E-value=0.011 Score=57.95 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=49.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-hcCccceEEEEEecCCc-CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK-ENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
.+++.++|++|+||||++..+..... ... -..+..++..... ...+-++...+.++.+.............+..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-
Confidence 35899999999999999998877654 222 2345556553321 1223344445555555433222233333333332
Q ss_pred CCeEEEEEeCCC
Q 044858 250 ETKILIILDDIW 261 (426)
Q Consensus 250 ~k~~LlVlDdv~ 261 (426)
..=+|++|..-
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 24588889763
No 271
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.13 Score=45.76 Aligned_cols=180 Identities=15% Similarity=0.191 Sum_probs=95.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
.+++-+.++|++|.|||-||+.|++... +.|+.||.. ++.+..+.. ....+..++--...
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs----elvqk~ige---------gsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS----ELVQKYIGE---------GSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH----HHHHHHhhh---------hHHHHHHHHHHHHh
Confidence 3667788999999999999999987543 346667653 222222110 11223334333344
Q ss_pred CCeEEEEEeCCCCccC----------------hhhhcCCCC--CCCCCeEEEEeecchhhhh----ccCCceeeEEccCC
Q 044858 250 ETKILIILDDIWGSLD----------------LEAIGIPLA--DDNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVL 307 (426)
Q Consensus 250 ~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L 307 (426)
.-+.+|++|++++... .-++...+. ...++.+||..|..-++.. ....-...++..+=
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 5688999999865410 011112221 2235678888776655431 12223456777776
Q ss_pred CHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh--cC----CHHHHHHHHHHH
Q 044858 308 NDKEAWSLFKKMTG--DCIENGELKSVVTEVVKECAGLPIAIVPIAKALK--NK----SPYEWRNALRQL 369 (426)
Q Consensus 308 ~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~--~~----~~~~w~~~l~~l 369 (426)
+++.-.++++-+.. +-..--++..+++++.-..|.--.++-.=|+..+ .+ +.++++-+....
T Consensus 319 ~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 319 NEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred CHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 66666666654432 2222344555555554433333333333344332 22 566666555543
No 272
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.54 E-value=0.0024 Score=56.52 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+..+|+|.|++|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 273
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.53 E-value=0.0045 Score=60.86 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc
Q 044858 152 HFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE 203 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 203 (426)
.++||++.++.+...+..+. -+.|.|++|+|||+||+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 47899999999988887654 488999999999999999998765433343
No 274
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.53 E-value=0.011 Score=52.18 Aligned_cols=85 Identities=22% Similarity=0.469 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCC-------CccccCcHH------
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGL-------KIDQESESV------ 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~-------~~~~~~~~~------ 238 (426)
.-+.|.|.+|+|||+|+.++.+.... +..+++.+++. ..+.++.+++...-.. ....++...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~----d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA----DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT----TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc----cceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 56899999999999999999988753 34477777654 4566666666443111 111111111
Q ss_pred HHHHHHHHHh-cCCeEEEEEeCCC
Q 044858 239 RAWRLLEQLK-KETKILIILDDIW 261 (426)
Q Consensus 239 ~~~~l~~~l~-~~k~~LlVlDdv~ 261 (426)
..-.+-+++. ++++.|+++||+-
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 1112223332 5899999999984
No 275
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.51 E-value=0.0023 Score=58.89 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=47.4
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH-hCCCccccCcHHH
Q 044858 161 KGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK-LGLKIDQESESVR 239 (426)
Q Consensus 161 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~-l~~~~~~~~~~~~ 239 (426)
..+++.+...+ +-+.++|+.|+|||++++...+...... | ...-++.+...+...++ .++++ +.......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~----- 93 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRV----- 93 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHH-HCCCTTECECTTEE-----
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCC-----
Confidence 34555555444 3468999999999999999887654322 2 13344555544444333 33221 11000000
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCC
Q 044858 240 AWRLLEQLKKETKILIILDDIWG 262 (426)
Q Consensus 240 ~~~l~~~l~~~k~~LlVlDdv~~ 262 (426)
+ .-..+|++++++||+.-
T Consensus 94 ----~-gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 94 ----Y-GPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp ----E-EEESSSEEEEEEETTT-
T ss_pred ----C-CCCCCcEEEEEecccCC
Confidence 0 00136899999999953
No 276
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.51 E-value=0.004 Score=51.83 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
..+|.|+|.+|+||||||+.+.+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999998764
No 277
>PRK08233 hypothetical protein; Provisional
Probab=96.50 E-value=0.0024 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|+|.|.+|+||||||..+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 278
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.50 E-value=0.0025 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 279
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.49 E-value=0.017 Score=61.21 Aligned_cols=180 Identities=20% Similarity=0.256 Sum_probs=89.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh--hcCccc-----------eEEEEEecCCcCHHHHHHHHHHHhCCCccccCcH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK--ENNLFE-----------KVISSRVSQTPQIKEIQREIAEKLGLKIDQESES 237 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~-----------~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~ 237 (426)
+.+++.|+|+.+.||||+.+.+.-..- ..+.|- ..++..++...++..-+..... ..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~----------~m 395 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSG----------HM 395 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHH----------HH
Confidence 456889999999999999999864421 111110 1122333322222211111110 01
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCccChh---hh----cCCCCCCCCCeEEEEeecchhhhhccCCce--eeEEccCCC
Q 044858 238 VRAWRLLEQLKKETKILIILDDIWGSLDLE---AI----GIPLADDNGGCKVLLTARSQDVLSCEMDCQ--QNFVVDVLN 308 (426)
Q Consensus 238 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---~l----~~~l~~~~~~s~iivTtr~~~va~~~~~~~--~~~~l~~L~ 308 (426)
.....+...+ ..+-|+++|++-...+.. .+ ...+ ...|+.+|+||............. ....+. ++
T Consensus 396 ~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d 470 (782)
T PRK00409 396 TNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE-FD 470 (782)
T ss_pred HHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee
Confidence 1122233333 357899999997543321 22 1122 124788999999977652111111 111111 11
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q 044858 309 DKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLKR 371 (426)
Q Consensus 309 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~l~~l~~ 371 (426)
.+ ......+...+... ...|-.|++.+ |+|-.|..-|..+.......++.++..+..
T Consensus 471 ~~-~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 471 EE-TLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred cC-cCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11 11110111111111 23466777777 899999888888876555566666666543
No 280
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.034 Score=56.15 Aligned_cols=95 Identities=27% Similarity=0.320 Sum_probs=58.9
Q ss_pred CcccccchHH---HHHHHHHHhccCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 149 DFMHFESRKS---TLKGILDALSNRN---------FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 149 ~~~~~~gR~~---~~~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
.+.+..|.++ ++.++++.|.++. ++=+.++|++|.|||.||+.+.....+. | .+.|...-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~F- 219 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDF- 219 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhh-
Confidence 3455667654 5556777776442 4567899999999999999999988775 2 22222110
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
.+ +. .. -....+..++..-++.-+|++++|.++..
T Consensus 220 Ve----mf----VG----vGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 220 VE----MF----VG----VGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred hh----hh----cC----CCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 00 00 00 01234555666655566899999998643
No 281
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.48 E-value=0.0069 Score=54.28 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=37.8
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHH
Q 044858 160 LKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ 220 (426)
Q Consensus 160 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il 220 (426)
..++++.+. .++..+|+|+|++|+|||||...+......+++=-.++-|.-|.+++-..++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 344555444 3466799999999999999999999888765444445555556666544443
No 282
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.48 E-value=0.35 Score=45.47 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=35.0
Q ss_pred eEEccCCCHHHHHHHHHHhhCCCCC--CCchHHHHHHHHHHcCCchHHH
Q 044858 301 NFVVDVLNDKEAWSLFKKMTGDCIE--NGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 301 ~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~i~~~c~GlPlai 347 (426)
++++++++.+|+..++......... ....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999888752221 1344556777788889999654
No 283
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.46 E-value=0.0028 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986654
No 284
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.006 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|.|.|++|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 285
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.032 Score=52.27 Aligned_cols=29 Identities=38% Similarity=0.489 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
.++-|.++||+|.|||-||+.+..+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 45678899999999999999999887644
No 286
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0053 Score=55.81 Aligned_cols=62 Identities=29% Similarity=0.419 Sum_probs=46.4
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 161 KGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 161 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.+++..+. .++..+|+|+|.+|+|||||...+......+++=..++-|.-|.+++-..++-+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 34444443 456789999999999999999999999887766566667777777765555543
No 287
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.44 E-value=0.027 Score=51.34 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh--cCccceEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE--NNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
+-+.|.|..|+|||+|+.++.+.... ++.-+.++++-+.+.. +..++..++...-... ...++...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46899999999999999998877541 1224677888887654 5667777665542211 11111111
Q ss_pred --HHHHHHHHHh-c-CCeEEEEEeCCCCc-cChhhh
Q 044858 239 --RAWRLLEQLK-K-ETKILIILDDIWGS-LDLEAI 269 (426)
Q Consensus 239 --~~~~l~~~l~-~-~k~~LlVlDdv~~~-~~~~~l 269 (426)
....+-+++. + ++++|+++||+-.. ....++
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 1223445554 2 68999999998543 334443
No 288
>PTZ00301 uridine kinase; Provisional
Probab=96.43 E-value=0.003 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.43 E-value=0.011 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|.|+.|+|||||++.+.....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35799999999999999999987643
No 290
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.069 Score=54.25 Aligned_cols=152 Identities=14% Similarity=0.200 Sum_probs=83.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
.-|.++|++|+|||-||..+......+ +++|-.+ +++...+ |. ...-+..++.....-++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~KyI---Ga------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKYI---GA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHHh---cc------cHHHHHHHHHHhhccCC
Confidence 358899999999999999998776543 5555443 3333322 21 12345567777777899
Q ss_pred EEEEEeCCCCccC-------------hhhhcCCCC--CCCCCeEEEE-eecchhhhh---ccCCceeeEEccCCCHHHHH
Q 044858 253 ILIILDDIWGSLD-------------LEAIGIPLA--DDNGGCKVLL-TARSQDVLS---CEMDCQQNFVVDVLNDKEAW 313 (426)
Q Consensus 253 ~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~s~iiv-Ttr~~~va~---~~~~~~~~~~l~~L~~~e~~ 313 (426)
|+|.||+.++... .+.+...+. .+-.|..|+- |||..-+-+ +...-.+.+.-+.=++.+-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 9999999976511 222322221 1224555554 555543321 11111223333333556666
Q ss_pred HHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH
Q 044858 314 SLFKKMTGDCIENGELKSVVTEVVKECAGLPIA 346 (426)
Q Consensus 314 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 346 (426)
++|+........+. ....+.++.+++|.--|
T Consensus 842 ~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 842 EILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 77776654211111 11245677788876543
No 291
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.40 E-value=0.02 Score=48.54 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|+|+.|.|||||++.+.....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999987643
No 292
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.40 E-value=0.032 Score=53.03 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 154 ESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 154 ~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|+...+.++.+.+. .....-|.|+|..|+||+++|+.+++...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 344444444444433 12234478999999999999999987654
No 293
>PRK06762 hypothetical protein; Provisional
Probab=96.40 E-value=0.0031 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+.+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 294
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.39 E-value=0.022 Score=49.07 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec--CCcCHHHHH------HHHHHHhCCCcc------ccCcH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS--QTPQIKEIQ------REIAEKLGLKID------QESES 237 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~--~~~~~~~il------~~i~~~l~~~~~------~~~~~ 237 (426)
-.+++|.|+.|+|||||.+.+...... ....+++.-. ...+..... .++++.++.... ..+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 358999999999999999999876432 2333333211 111222211 124455543211 11111
Q ss_pred -HHHHHHHHHHhcCCeEEEEEeCCCCccC---hhhhcCCCCC--CCCCeEEEEeecchhh
Q 044858 238 -VRAWRLLEQLKKETKILIILDDIWGSLD---LEAIGIPLAD--DNGGCKVLLTARSQDV 291 (426)
Q Consensus 238 -~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~l~~--~~~~s~iivTtr~~~v 291 (426)
...-.+.+.+.. .+-++++|+.-..-+ ...+...+.. ...+..||++|.+...
T Consensus 102 ~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 102 ERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 112234444443 678999999864422 2222222211 1125678888887654
No 295
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.39 E-value=0.03 Score=51.35 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=54.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH-hCC-CccccCcHHH----HHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK-LGL-KIDQESESVR----AWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~-l~~-~~~~~~~~~~----~~~l~~ 245 (426)
-+++=|+|+.|+||||+|.+++-..... -...+|++....+++..+.. +... +.. -.......+. +..+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 3578899999999999999987665433 33789999999999877544 3333 211 1111112222 223333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 044858 246 QLKKETKILIILDDIWG 262 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~~ 262 (426)
...+ +--|+|+|.+-.
T Consensus 137 ~~~~-~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAE-KIDLLVVDSVAA 152 (279)
T ss_pred hccC-CCCEEEEecCcc
Confidence 2222 356999999853
No 296
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.36 E-value=0.029 Score=47.56 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=64.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccce-EE-EEEecCCcCHHHHHHHHH---HHhCCC--ccccC---cHHH--
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-VI-SSRVSQTPQIKEIQREIA---EKLGLK--IDQES---ESVR-- 239 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~-wv~v~~~~~~~~il~~i~---~~l~~~--~~~~~---~~~~-- 239 (426)
...|-|++..|.||||.|.-+.-+....+ +.+ ++ |+..........++.... .+++.. ....+ +...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 35788888899999999998887766433 332 22 333332344444554430 001111 11111 1111
Q ss_pred --HHHHHHHHhcCCeEEEEEeCCCCc-----cChhhhcCCCCCCCCCeEEEEeecchh
Q 044858 240 --AWRLLEQLKKETKILIILDDIWGS-----LDLEAIGIPLADDNGGCKVLLTARSQD 290 (426)
Q Consensus 240 --~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~iivTtr~~~ 290 (426)
.....+.+..+.-=|||||++-.. -+.+.+...+.....+.-||+|.|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 223344444555569999998532 233444444444445778999999874
No 297
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.041 Score=57.35 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK 230 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~ 230 (426)
..++.++|+.|+||||++..+............+..++.... ....+-++...+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC
Confidence 469999999999999999999876643221223444443221 11334444445555543
No 298
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.34 E-value=0.0035 Score=55.40 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+|+|+|++|+|||||++.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999987654
No 299
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.037 Score=53.94 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=45.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
..+++++|+.|+||||++..+............+..++... .....+-+....+.++.+.............+..+. +
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-~ 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-G 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc-C
Confidence 46899999999999999998876543222123333443322 112333344555555655433222222223333332 1
Q ss_pred CeEEEEEeCC
Q 044858 251 TKILIILDDI 260 (426)
Q Consensus 251 k~~LlVlDdv 260 (426)
.-++++|-.
T Consensus 270 -~d~VLIDTa 278 (420)
T PRK14721 270 -KHMVLIDTV 278 (420)
T ss_pred -CCEEEecCC
Confidence 235556654
No 300
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.76 Score=44.45 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=37.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe-cCCcCHHHHHHHHHHHhCCC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV-SQTPQIKEIQREIAEKLGLK 230 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v-~~~~~~~~il~~i~~~l~~~ 230 (426)
.+.+|..+|.-|+||||.+-.+.+..+.++ +.. .-|++ -..+..-+=++.+..+.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~kv-llVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-KKV-LLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-Cce-EEEecccCChHHHHHHHHHHHHcCCc
Confidence 467899999999999999999988887632 222 22222 12223344566666666544
No 301
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.28 E-value=0.061 Score=50.43 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-----cCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-----ESESVRAWRLLEQ 246 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 246 (426)
-+++-|+|+.|+||||||.++....... -..++|+.....+++. .+..+|.+.+. .+..+..-.+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4689999999999999999998776443 3457899988776653 34455554332 1112222233333
Q ss_pred H-hcCCeEEEEEeCCCCc
Q 044858 247 L-KKETKILIILDDIWGS 263 (426)
Q Consensus 247 l-~~~k~~LlVlDdv~~~ 263 (426)
+ ..+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 3 4455569999998654
No 302
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.28 E-value=0.026 Score=50.96 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|.|+.|+|||||.+.++.-.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987544
No 303
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.28 E-value=0.011 Score=52.94 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=50.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcc------------------
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID------------------ 232 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~------------------ 232 (426)
...++.|.|++|+|||+|+.++......+ .=..++|++...+ ..++.+.+. .++.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 34689999999999999999977554322 0124667776544 355554433 3332110
Q ss_pred ---ccCcHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 233 ---QESESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 233 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
..+.......+.+.+...+...+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 11223344555555554455799999874
No 304
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.28 E-value=0.028 Score=51.51 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
-.++.|.|++|+|||+++.++......+ -..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4689999999999999999987654332 34567787764
No 305
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.27 E-value=0.0049 Score=50.68 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
++|.|+|+.|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 579999999999999999999998764 355554555544
No 306
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.024 Score=50.17 Aligned_cols=72 Identities=25% Similarity=0.293 Sum_probs=46.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
.++-+.++|++|+|||.||+.|.+..... |+.|-. .++.+. .+|.. ...+..+++..+++
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~-------firvvg----sefvqk---ylgeg------prmvrdvfrlaken 247 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAA-------FIRVVG----SEFVQK---YLGEG------PRMVRDVFRLAKEN 247 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchh-------eeeecc----HHHHHH---HhccC------cHHHHHHHHHHhcc
Confidence 46678899999999999999999886643 333322 122222 22211 12445556666667
Q ss_pred CeEEEEEeCCCC
Q 044858 251 TKILIILDDIWG 262 (426)
Q Consensus 251 k~~LlVlDdv~~ 262 (426)
-+.++++|+++.
T Consensus 248 apsiifideida 259 (408)
T KOG0727|consen 248 APSIIFIDEIDA 259 (408)
T ss_pred CCcEEEeehhhh
Confidence 789999999864
No 307
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.26 E-value=0.0099 Score=52.19 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIK 217 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 217 (426)
.|+|+|-||+||||+|..+......++.| .+.-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChH
Confidence 58999999999999999977766654433 34456666666544
No 308
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.26 E-value=0.031 Score=51.49 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=48.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH--HHHHHHHHHHhCCCcc---cc-CcHHHHHHH
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI--KEIQREIAEKLGLKID---QE-SESVRAWRL 243 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~il~~i~~~l~~~~~---~~-~~~~~~~~l 243 (426)
.+++++.++|++|+||||++..+....... -..+..++... +.. .+-+....+..+.+.. .. +........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346789999999999999999998776543 23455555432 222 2333444555553321 11 111222222
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 044858 244 LEQLKKETKILIILDDIW 261 (426)
Q Consensus 244 ~~~l~~~k~~LlVlDdv~ 261 (426)
.........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 222222234578888764
No 309
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.23 E-value=0.028 Score=55.32 Aligned_cols=89 Identities=21% Similarity=0.323 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcH------
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESES------ 237 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~------ 237 (426)
-+-++|.|.+|+|||||+.++.+....+ +-+.++++-+... ....++..++...-... ....+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 3568999999999999999998877653 5677777777654 45666777665432211 1111111
Q ss_pred HHHHHHHHHHh-c-CCeEEEEEeCCC
Q 044858 238 VRAWRLLEQLK-K-ETKILIILDDIW 261 (426)
Q Consensus 238 ~~~~~l~~~l~-~-~k~~LlVlDdv~ 261 (426)
.....+-+++. + ++++||++|++-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 12234455553 2 799999999984
No 310
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.23 E-value=0.011 Score=60.71 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=57.7
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.....+.|.++.++.|...+..+ +.+.++|++|+||||+|+.+.+.... .+++..+|..- ...+...+++.+..++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 34567889888888877766654 46889999999999999999987543 34677777554 4446777777777666
Q ss_pred CC
Q 044858 228 GL 229 (426)
Q Consensus 228 ~~ 229 (426)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 53
No 311
>PRK01184 hypothetical protein; Provisional
Probab=96.23 E-value=0.026 Score=48.78 Aligned_cols=21 Identities=48% Similarity=0.816 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.+|.|+|++|+||||+++ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 443
No 312
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.22 E-value=0.032 Score=55.31 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKI 231 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~ 231 (426)
..+++++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 46999999999999999999998764332122344444332 1223344455556655544
No 313
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.21 E-value=0.0034 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
++.|+|+.|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999843
No 314
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.20 E-value=0.068 Score=42.54 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.2
Q ss_pred HHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 159 TLKGILDALSN---RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 159 ~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.++.|...+.+ +++-|++.+|.+|+|||.+++.+.+..
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34444444442 356689999999999999999998874
No 315
>PF13245 AAA_19: Part of AAA domain
Probab=96.20 E-value=0.017 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=18.5
Q ss_pred CccEEEEEcCCCCcHHHHHHH-HHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKE-VGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~-v~~~~ 196 (426)
+.+++.|.|++|.|||+++.. +.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788899999999955544 44444
No 316
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.20 E-value=0.0047 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 317
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.01 Score=51.40 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=32.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
..+|+|-||-|+||||||+.+.+..... .++-.+.+++-+..+..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 4689999999999999999999987643 2334444554444444433
No 318
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.19 E-value=0.019 Score=55.99 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
+-..++|.|..|+|||||++.+..... .+.++.+-+++.. .+.++..+++..-+.. ...++...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999986432 3455556665543 4566666665442211 11111111
Q ss_pred --HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 --RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 --~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++||++||+-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112334444 258999999999853
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.18 E-value=0.025 Score=46.79 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|.|+.|.|||||++.+.....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 36799999999999999999987653
No 320
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.16 E-value=0.031 Score=56.18 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=57.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc----------------c
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ----------------E 234 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~----------------~ 234 (426)
.-.++.|.|++|+|||||+.++......+ -..+++++... +..++.... +.++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34689999999999999999998876543 34456665443 455665554 455543211 1
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 235 SESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 235 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
+..+.+..+.+.+.+.+.-++|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 124566677777766667799999985
No 321
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.005 Score=53.84 Aligned_cols=28 Identities=39% Similarity=0.536 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
++.+|+|.|.+|+||||+|+.+++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 3468999999999999999999998774
No 322
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.15 E-value=0.0096 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+.|.|+|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999988765
No 323
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.13 E-value=0.0056 Score=52.24 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+...|.|+|++|+||||+|+.+.+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998864
No 324
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.12 E-value=0.027 Score=58.87 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=54.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc------cCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ------ESESVRAWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (426)
-+++-|+|++|+|||||+.+++...... -..++|+.....++. ..+++++.+.+. .+.......+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4688899999999999998876654332 345789988777774 366777765321 122223333333
Q ss_pred HHhcCCeEEEEEeCCC
Q 044858 246 QLKKETKILIILDDIW 261 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~ 261 (426)
.+.+++.-|||+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 3445567799999975
No 325
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.024 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|.|||||.+.+..-.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998743
No 326
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.16 Score=47.02 Aligned_cols=125 Identities=9% Similarity=-0.008 Sum_probs=67.4
Q ss_pred HHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhc------------CccceEEEEE-ecCC--cCHHHHHHHHH
Q 044858 161 KGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKEN------------NLFEKVISSR-VSQT--PQIKEIQREIA 224 (426)
Q Consensus 161 ~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f~~~~wv~-v~~~--~~~~~il~~i~ 224 (426)
+.+...+..++ .....++|+.|+||+++|..+....-.. .|.|.. ++. .... ..
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~-~i~p~~~~~~I~--------- 76 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIH-EFSPQGKGRLHS--------- 76 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEE-EEecCCCCCcCc---------
Confidence 45566666555 4567899999999999999887765321 122222 221 1110 11
Q ss_pred HHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc-hhhhhccCC
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS-QDVLSCEMD 297 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~-~~va~~~~~ 297 (426)
.+.+..+.+.+. .++.-++|+|+++.. ..++.+...+-.-..++.+|++|.+ ..+.+...+
T Consensus 77 ------------idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 77 ------------IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred ------------HHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 122223333331 245568899999754 4555554444333345666665555 444332233
Q ss_pred ceeeEEccCC
Q 044858 298 CQQNFVVDVL 307 (426)
Q Consensus 298 ~~~~~~l~~L 307 (426)
....+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 4556666654
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.11 E-value=0.017 Score=57.27 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=52.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc--CcHHHHHHHHHHHhc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE--SESVRAWRLLEQLKK 249 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 249 (426)
-.++.|.|.+|+|||||+.++....... -..++|++... +...+... ++.++...+.. ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 3588999999999999999998876532 23567777543 33443322 45555432210 001123455555555
Q ss_pred CCeEEEEEeCCC
Q 044858 250 ETKILIILDDIW 261 (426)
Q Consensus 250 ~k~~LlVlDdv~ 261 (426)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 567799999985
No 328
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.11 E-value=0.0044 Score=48.40 Aligned_cols=24 Identities=46% Similarity=0.731 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
|.|+|++|+|||+||+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887653
No 329
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.10 E-value=0.0092 Score=56.69 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-++..++|.++.+..|+..+.++...-+.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35677899999999998888888888888999999999999999987654
No 330
>PRK03839 putative kinase; Provisional
Probab=96.09 E-value=0.0054 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998865
No 331
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.0054 Score=49.75 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=26.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
.+.|.|.|.+|+|||||+..+.....-. |+++|.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~-------~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE-------YIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc-------eEehhh
Confidence 4568999999999999999999655432 666664
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.07 E-value=0.011 Score=49.98 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=56.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC--CcCHHHHHHHHHHHhCCCccccCcHH-HHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ--TPQIKEIQREIAEKLGLKIDQESESV-RAWRLLEQLK 248 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~il~~i~~~l~~~~~~~~~~~-~~~~l~~~l~ 248 (426)
-.+++|.|+.|+|||||.+.+...... ....+++.-.. ..+..+..+ +.++.- ...+..+ ..-.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHh
Confidence 357999999999999999999876432 23344432211 111111111 111110 0011111 1223344444
Q ss_pred cCCeEEEEEeCCCCccC---hhhhcCCCCC-CCCCeEEEEeecchhh
Q 044858 249 KETKILIILDDIWGSLD---LEAIGIPLAD-DNGGCKVLLTARSQDV 291 (426)
Q Consensus 249 ~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~~s~iivTtr~~~v 291 (426)
. ++-++++|+.-..-+ ...+...+.. ...+..||++|.+...
T Consensus 99 ~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 R-NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred c-CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3 578999999865422 2222222211 1236678888888653
No 333
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.07 E-value=0.015 Score=55.14 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=33.5
Q ss_pred ccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 151 MHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..++|+...+..+.+.+. .....-|.|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 346777777766666554 1223457899999999999999998654
No 334
>COG4240 Predicted kinase [General function prediction only]
Probab=96.06 E-value=0.047 Score=47.75 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=53.8
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC-----CCccccCcHHHHHHH
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG-----LKIDQESESVRAWRL 243 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~-----~~~~~~~~~~~~~~l 243 (426)
.+++-+++|.|+-|+||||++..+++....+.. ..+...++..-+-...-.-.++++.. ...+...+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 345778999999999999999999998876543 35555555443333333344455532 122334556677778
Q ss_pred HHHHhcCCe
Q 044858 244 LEQLKKETK 252 (426)
Q Consensus 244 ~~~l~~~k~ 252 (426)
++.+.+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 888876653
No 335
>PRK04040 adenylate kinase; Provisional
Probab=96.05 E-value=0.006 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.+|.|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999988764
No 336
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.04 E-value=0.0094 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-|.|.|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 337
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.01 E-value=0.039 Score=54.36 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccc--eEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcH-----
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--KVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESES----- 237 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~----- 237 (426)
+-++|.|..|+|||+|+.++.+.....+.+. .++++-+++. ..+.+++..+...-... ..+.+..
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 5689999999999999999988765321121 4556666544 45667777776432211 0111111
Q ss_pred -HHHHHHHHHHh--cCCeEEEEEeCCCC
Q 044858 238 -VRAWRLLEQLK--KETKILIILDDIWG 262 (426)
Q Consensus 238 -~~~~~l~~~l~--~~k~~LlVlDdv~~ 262 (426)
-....+-+++. +++++||++||+-.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12234556665 58999999999853
No 338
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.98 E-value=0.0078 Score=51.10 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999988764
No 339
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.97 E-value=0.04 Score=53.97 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=57.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcH------H
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESES------V 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~------~ 238 (426)
+-++|.|.+|+|||+|+.++....... +-+.++++-+.... ...++..++...-... ....+.. .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 568999999999999999998775532 34677788776544 5666777665432111 1111111 1
Q ss_pred HHHHHHHHHh--cCCeEEEEEeCCCC
Q 044858 239 RAWRLLEQLK--KETKILIILDDIWG 262 (426)
Q Consensus 239 ~~~~l~~~l~--~~k~~LlVlDdv~~ 262 (426)
....+-+++. +++++||++||+-.
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHH
Confidence 2234555665 47999999999853
No 340
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.97 E-value=0.019 Score=51.38 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh-----hcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 160 LKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK-----ENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
.+.+...+..+. +..|+|++|+|||+++..+..... ....-...+-++...+..+..++..+.+
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344444443332 688999999999987777766651 1122333444444444445555554443
No 341
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.97 E-value=0.03 Score=55.58 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc--CcHHHHHHHHHHHhc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE--SESVRAWRLLEQLKK 249 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 249 (426)
-.++.|.|.+|+|||||+.++.......+ ..++|++... +..++... +..++...+.. ........+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 36899999999999999999977665432 3467776543 33333322 33444332210 001123455555555
Q ss_pred CCeEEEEEeCCCC
Q 044858 250 ETKILIILDDIWG 262 (426)
Q Consensus 250 ~k~~LlVlDdv~~ 262 (426)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 5677999999853
No 342
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.96 E-value=0.028 Score=54.95 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCC------CccccCcHH------H
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGL------KIDQESESV------R 239 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~------~~~~~~~~~------~ 239 (426)
-..++|+|+.|+|||||++.+...... ...+++.......++.++....+..... ....++... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 357999999999999999988765432 2234444333444555554444333210 011111111 1
Q ss_pred HHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 240 AWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 240 ~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
...+-+++ .+++++|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 12233444 248999999999843
No 343
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.96 E-value=0.057 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998765
No 344
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.94 E-value=0.0055 Score=53.73 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+|+|.|+.|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 345
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.94 E-value=0.059 Score=52.71 Aligned_cols=88 Identities=16% Similarity=0.327 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
+-..++|+|..|+|||||++++.+.... +.++++-++... .+.++..+.+..-+.. ....+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 4467899999999999999999876542 344555555443 4556665555432211 11111111
Q ss_pred --HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 --RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 --~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122344444 358999999999843
No 346
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.94 E-value=0.064 Score=52.76 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcHH-----
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESESV----- 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~~----- 238 (426)
-+-++|.|.+|+|||||+.++......+. -+.++++-+... ..+.+++.++...-... ....+...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999887765432 245667766544 45667777776542211 11111111
Q ss_pred -HHHHHHHHH--hcCCeEEEEEeCCC
Q 044858 239 -RAWRLLEQL--KKETKILIILDDIW 261 (426)
Q Consensus 239 -~~~~l~~~l--~~~k~~LlVlDdv~ 261 (426)
....+-+++ .+++++||++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 122344555 25899999999985
No 347
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.93 E-value=0.04 Score=52.11 Aligned_cols=38 Identities=37% Similarity=0.601 Sum_probs=29.4
Q ss_pred HHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 162 GILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 162 ~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
.+++.+. .++..+|+|.|++|+|||||+..+.......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444433 3567799999999999999999988877653
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.026 Score=48.13 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|.|+.|.|||||.+.+.....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 36899999999999999999987654
No 349
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.91 E-value=0.013 Score=50.72 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 211 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 211 (426)
.++|.|+|+.|+|||||+..+...... .|...+..+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceeeccc
Confidence 478999999999999999999998763 37544444443
No 350
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.91 E-value=0.035 Score=52.06 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=25.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
+...+|.|+|++|+|||||+..+.......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999998876543
No 351
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.91 E-value=0.014 Score=55.31 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=40.4
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
++..++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 345678999999888877777767778899999999999999998665
No 352
>PRK15453 phosphoribulokinase; Provisional
Probab=95.90 E-value=0.061 Score=49.22 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+..+|+|.|.+|+||||+++.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999987654
No 353
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.90 E-value=0.024 Score=55.32 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=33.1
Q ss_pred cccchHHHHHHHHHHhc-------cC---------CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALS-------NR---------NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~-------~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|.+..++.+...+. .. ....+.++|++|+|||+||+.+.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36788877776644431 10 135689999999999999999987654
No 354
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.11 Score=50.43 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=44.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKET 251 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 251 (426)
++-+.+.|++|.|||.|++.|+-..... +.+++.. .+...+..+. ...+..++..-+...
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSas------------sLtsK~~Ge~-eK~vralf~vAr~~q 245 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISAS------------SLTSKYVGES-EKLVRALFKVARSLQ 245 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcce-------EeeccHH------------HhhhhccChH-HHHHHHHHHHHHhcC
Confidence 4456699999999999999999887653 2222211 1111222222 233444454445567
Q ss_pred eEEEEEeCCCCc
Q 044858 252 KILIILDDIWGS 263 (426)
Q Consensus 252 ~~LlVlDdv~~~ 263 (426)
+.++++|+++..
T Consensus 246 PsvifidEidsl 257 (428)
T KOG0740|consen 246 PSVIFIDEIDSL 257 (428)
T ss_pred CeEEEechhHHH
Confidence 889999998643
No 355
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.88 E-value=0.0092 Score=53.04 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.++.|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.88 E-value=0.098 Score=46.92 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
-.++.|.|++|+|||+|+.++......+ -...+|++...
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 4689999999999999999977554322 34567777643
No 357
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.88 E-value=0.0073 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+++|+|+.|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987654
No 358
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.87 E-value=0.0083 Score=51.46 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987753
No 359
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.87 E-value=0.055 Score=50.94 Aligned_cols=87 Identities=20% Similarity=0.359 Sum_probs=51.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec-CCcCHHHHHHHHHHHhCCC-------ccccCcHH-----
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLK-------IDQESESV----- 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~il~~i~~~l~~~-------~~~~~~~~----- 238 (426)
-..++|.|..|+|||||.+.+...... +......+. ...++.++.......-+.. ...++...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999999998876542 233333333 3445666666665543221 11111111
Q ss_pred -HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 -RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 -~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++.+||++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 112233333 358999999999843
No 360
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.0056 Score=54.67 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4578999999999999999997743
No 361
>PRK00625 shikimate kinase; Provisional
Probab=95.84 E-value=0.0083 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|.++|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 362
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.83 E-value=0.024 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|.|+.|+|||||.+.+.....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35799999999999999999987643
No 363
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.0076 Score=51.75 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
+.|.+.|.+|+||||+|+++.......
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999887653
No 364
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.82 E-value=0.007 Score=52.25 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 365
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.82 E-value=0.015 Score=50.74 Aligned_cols=122 Identities=24% Similarity=0.289 Sum_probs=57.9
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC--c----CHHH-------HHHHHHHH
Q 044858 160 LKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT--P----QIKE-------IQREIAEK 226 (426)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~----~~~~-------il~~i~~~ 226 (426)
-...++.+. ...++.+.|++|+|||.||....-+.-..+.|+.++++.-.-. . -+.+ .+.-+...
T Consensus 9 Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~ 86 (205)
T PF02562_consen 9 QKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDA 86 (205)
T ss_dssp HHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHH
T ss_pred HHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHH
Confidence 334445555 3468999999999999999998876655577888777642211 0 0111 11111222
Q ss_pred hCCCccccCcHHHHHHHHH----------HHhcC---CeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 227 LGLKIDQESESVRAWRLLE----------QLKKE---TKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~----------~l~~~---k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
+..-..... ...+.+ ++ +| ...+|++|++.+. .++..+... .+.+|++|++--..+.
T Consensus 87 l~~~~~~~~----~~~~~~~~~Ie~~~~~~i-RGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 87 LEELFGKEK----LEELIQNGKIEIEPLAFI-RGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQI 158 (205)
T ss_dssp HTTTS-TTC----HHHHHHTTSEEEEEGGGG-TT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-----
T ss_pred HHHHhChHh----HHHHhhcCeEEEEehhhh-cCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCceee
Confidence 211111111 111111 11 12 2479999999765 456655444 4568999998876543
No 366
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.036 Score=51.02 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.++|.++||+|.|||+|.+.+++...+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 478999999999999999999998754
No 367
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.79 E-value=0.019 Score=46.45 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..+|.+.|.-|+||||+++.+.+....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999988653
No 368
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.78 E-value=0.0075 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 369
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.064 Score=47.86 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=40.6
Q ss_pred cccCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 145 KSTQDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 145 ~~~~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|+..+.++-|-+..++++++.+. -..++-+..+|++|.|||-+|+.......
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 344556778888999999888764 12456688999999999999998876544
No 370
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.77 E-value=0.011 Score=50.70 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..+|.|+|++|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999988754
No 371
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.76 E-value=0.014 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
..++.|.|+.|.||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 372
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.75 E-value=0.042 Score=54.99 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=49.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceE-EEEEecCCc-CHHHHHHHHHHHhCCCccccCc------HHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKV-ISSRVSQTP-QIKEIQREIAEKLGLKIDQESE------SVRAWRL 243 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~v~~~~-~~~~il~~i~~~l~~~~~~~~~------~~~~~~l 243 (426)
-.-..|+|++|+|||||++.+.+..... +-++. +.+-+...+ .+.++.+.+-..+-...-..+. ......+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999876542 23333 344555444 3333433321111111111111 1112233
Q ss_pred HHHH-hcCCeEEEEEeCCC
Q 044858 244 LEQL-KKETKILIILDDIW 261 (426)
Q Consensus 244 ~~~l-~~~k~~LlVlDdv~ 261 (426)
-+++ ..++.+||++|++-
T Consensus 495 Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHcCCCEEEEEeCch
Confidence 3444 35899999999985
No 373
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.75 E-value=0.011 Score=52.25 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=26.8
Q ss_pred hccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 167 LSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 167 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..+++++|+++|+.|+|||||...+.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999999988753
No 374
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.74 E-value=0.056 Score=49.06 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=42.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC--cCHHHHHHHHHHH----hCCCc--cccCcHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT--PQIKEIQREIAEK----LGLKI--DQESESVRAWRLLE 245 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~il~~i~~~----l~~~~--~~~~~~~~~~~l~~ 245 (426)
+|+|.|.+|+||||+++.+.+.....+ ..+..++...- .+-...-..+... .+... +...+.+.+...++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999988765432 12333333222 1222222222221 12222 34455666667777
Q ss_pred HHhcCC
Q 044858 246 QLKKET 251 (426)
Q Consensus 246 ~l~~~k 251 (426)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 776543
No 375
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.027 Score=51.51 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=58.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
.+..+.|||++|.|||-+|+.|+....+. | +.++.. .+.. . ........+.+.++...+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--f-----l~v~ss----~lv~--------k-yiGEsaRlIRemf~yA~~~ 224 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN--F-----LKVVSS----ALVD--------K-YIGESARLIRDMFRYAREV 224 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc--e-----EEeeHh----hhhh--------h-hcccHHHHHHHHHHHHhhh
Confidence 45688999999999999999999988765 3 222111 0000 0 0011123344444555555
Q ss_pred CeEEEEEeCCCCcc----------------ChhhhcCCCC--CCCCCeEEEEeecchhhh
Q 044858 251 TKILIILDDIWGSL----------------DLEAIGIPLA--DDNGGCKVLLTARSQDVL 292 (426)
Q Consensus 251 k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~~s~iivTtr~~~va 292 (426)
.+|.|.+||++-.. .+-++...+- +..+..++|+||...+..
T Consensus 225 ~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 225 IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 67999999986320 0111111111 223567899999887654
No 376
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.74 E-value=0.03 Score=57.64 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=50.5
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC
Q 044858 150 FMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 228 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~ 228 (426)
...++|.++.++.+...+..+. .+.++|++|+||||+++.+.+..... .|...+++. ....+..++++.+..+++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 4567888888777777666543 56699999999999999999877543 333333332 233355566666666554
No 377
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.74 E-value=0.04 Score=53.84 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=57.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh------c-----CccceEEEEEecCCcCHHHHHHHHHHHhC-CC-------ccc
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE------N-----NLFEKVISSRVSQTPQIKEIQREIAEKLG-LK-------IDQ 233 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~------~-----~~f~~~~wv~v~~~~~~~~il~~i~~~l~-~~-------~~~ 233 (426)
+-++|.|.+|+|||||+.++.+.... . +.=..++++-+++.....+.+.+.+..-+ .. ...
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 46899999999999999999877641 0 00015667777777777776666666544 21 111
Q ss_pred cCcHH------HHHHHHHHHh--cCCeEEEEEeCCC
Q 044858 234 ESESV------RAWRLLEQLK--KETKILIILDDIW 261 (426)
Q Consensus 234 ~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~ 261 (426)
.+... ....+-+++. +++++||++||+-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 11111 1224555665 4799999999984
No 378
>PRK08149 ATP synthase SpaL; Validated
Probab=95.74 E-value=0.064 Score=52.37 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec-CCcCHHHHHHHHHHHhCCC-------ccccCcH------
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGLK-------IDQESES------ 237 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~il~~i~~~l~~~-------~~~~~~~------ 237 (426)
-..++|+|..|+|||||+..+..... -+.++...+. ...++.++..+........ ....+..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 45789999999999999999987543 2333344444 3345666666666543211 1111111
Q ss_pred HHHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 238 VRAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 238 ~~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
.....+-+++ .+++++||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1122333444 358999999999853
No 379
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.74 E-value=0.042 Score=57.41 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-..|+|+|..|+|||||++.+..-..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999876543
No 380
>PRK06217 hypothetical protein; Validated
Probab=95.74 E-value=0.0085 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|.|.|.+|+||||+|+.+......
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999987653
No 381
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.74 E-value=0.11 Score=48.04 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.++.|.|++|+||||++.++....... +-..++|++... +..++...+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 578899999999999999988765432 123567777654 345566665544
No 382
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.74 E-value=0.034 Score=47.35 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=42.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc---cCcHHHHHHHHHHHhcC
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ---ESESVRAWRLLEQLKKE 250 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~ 250 (426)
++.|.|.+|+||||+|..+...... ..+++.-... .-.+..+.|.......... -.....+..+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 6899999999999999999876422 1334433333 3345555654443322111 1111123333333222
Q ss_pred CeEEEEEeCC
Q 044858 251 TKILIILDDI 260 (426)
Q Consensus 251 k~~LlVlDdv 260 (426)
+.-++++|.+
T Consensus 76 ~~~~VlID~L 85 (170)
T PRK05800 76 PGRCVLVDCL 85 (170)
T ss_pred CCCEEEehhH
Confidence 2337888986
No 383
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.73 E-value=0.0085 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.|.|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 384
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.72 E-value=0.013 Score=52.48 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=38.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe---------cCCcCHHHH--HHHHHHHhCCCcc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV---------SQTPQIKEI--QREIAEKLGLKID 232 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v---------~~~~~~~~i--l~~i~~~l~~~~~ 232 (426)
++..|.++||+|+||||..+.++.....+..-. .-+++ +.+.++++. .++.+++.++..+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~pp--YviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPP--YVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCC--eEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 466889999999999999999998876543222 22222 223355543 3566777655443
No 385
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.71 E-value=0.032 Score=45.05 Aligned_cols=36 Identities=14% Similarity=-0.104 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEE
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSR 209 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 209 (426)
.+.|.|+.|+|||+.+..+............+++++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999988887765433345566654
No 386
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.70 E-value=0.009 Score=51.42 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988653
No 387
>PRK14527 adenylate kinase; Provisional
Probab=95.70 E-value=0.011 Score=51.42 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+..+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987764
No 388
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.67 E-value=0.081 Score=52.36 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhhh-----cCccceEEEEEecCCcCHHHHHHHHHHHhC-CCc-------cccCcHH
Q 044858 173 NMIGVYGMGGIGKTTLV-KEVGRQAKE-----NNLFEKVISSRVSQTPQIKEIQREIAEKLG-LKI-------DQESESV 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~v~~~~~~~~il~~i~~~l~-~~~-------~~~~~~~ 238 (426)
+-+.|.|..|+|||+|| ..+.+.... .+.-+.++++-+++..+...-+.+.++.-+ ... ..++...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46889999999999996 666666522 123456788888876643333444444433 110 1111111
Q ss_pred ------HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 ------RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 ------~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++|+|+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 112233333 357999999999853
No 389
>PRK13975 thymidylate kinase; Provisional
Probab=95.67 E-value=0.024 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+|+|.|+.|+||||+++.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999988753
No 390
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.66 E-value=0.019 Score=52.69 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
..+++.|+|.+|+|||+++.++....... ...++||+....+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH
Confidence 45789999999999999999999887754 7788999887653
No 391
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.66 E-value=0.018 Score=50.50 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.++..+|.|+|++|+||||||+.+......
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346679999999999999999999987643
No 392
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.66 E-value=0.033 Score=53.04 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 153 FESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
++|+++.+..+...+..++ -+.+.|++|+|||+||+.+....... .+++.+.......++...
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCc
Confidence 6778888877777766553 37899999999999999999887632 345666666666665443
No 393
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.66 E-value=0.069 Score=52.21 Aligned_cols=88 Identities=17% Similarity=0.325 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
+-..++|.|..|+|||||...+++... .+.++++-++.. ..+.++....+..-+.. ...++...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 345789999999999999999988754 345667766654 35555555544332111 11111111
Q ss_pred --HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 --RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 --~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122334444 258999999999853
No 394
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.65 E-value=0.0091 Score=51.36 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
++|+|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998854
No 395
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.64 E-value=0.13 Score=53.68 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=34.1
Q ss_pred cccccchHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 150 FMHFESRKSTLKGILDALS---NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..++|....+.++.+... ... .-|.|+|..|+||+++|+.+++...
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~-~pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSS-FPVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcC-CCEEEECCCCcCHHHHHHHHHHhCC
Confidence 4456777766666665554 222 3378999999999999999988653
No 396
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.63 E-value=0.011 Score=46.86 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987654
No 397
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.62 E-value=0.021 Score=48.53 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
|.|+|.+|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988753
No 398
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.62 E-value=0.047 Score=52.53 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 213 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 213 (426)
.++.|.|.+|+|||.||-.++.............+++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 47899999999999999999998822233455566665543
No 399
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.012 Score=51.85 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+|+|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
No 400
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.60 E-value=0.081 Score=49.92 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIA 224 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~ 224 (426)
-..++|.|..|+|||+|++++.+... -+.++++-+.+. ..+.+++.++-
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 35789999999999999999988643 356777777654 45566666653
No 401
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.011 Score=51.14 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 402
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.60 E-value=0.019 Score=54.42 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=38.4
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
++..++|.++.++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 456788999988887765554444568899999999999999997764
No 403
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.59 E-value=0.015 Score=46.37 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
|.|+|.+|+||||+|+.+.......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999887643
No 404
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.59 E-value=0.025 Score=52.09 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=52.9
Q ss_pred HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-------cC
Q 044858 163 ILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-------ES 235 (426)
Q Consensus 163 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-------~~ 235 (426)
....+...+..++.|.|.+|+|||||+..+.+..... .. .+.+ .....+..+ .+.++..+.+.-. ..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 4444456678899999999999999999999886543 22 2222 222222222 2223444433211 11
Q ss_pred cHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 044858 236 ESVRAWRLLEQLKKETKILIILDDIWG 262 (426)
Q Consensus 236 ~~~~~~~l~~~l~~~k~~LlVlDdv~~ 262 (426)
+...+......+.....-+++++++-+
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 233344445555433346778898854
No 405
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.59 E-value=0.051 Score=48.08 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999987653
No 406
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.58 E-value=0.024 Score=53.16 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ 220 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il 220 (426)
+++.+.|.||+||||+|....-....++ ..+.-++..+..++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6789999999999999988876655432 234455555554544444
No 407
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.58 E-value=0.041 Score=53.21 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 152 HFESRKSTLKGILDALSN--------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.++|.++.++.+.-.+.. ..++.|.++|++|+|||++|+.+......
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356766666665444331 12467899999999999999999988754
No 408
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.58 E-value=0.071 Score=52.73 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=56.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc---CccceEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcH---
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN---NLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESES--- 237 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~--- 237 (426)
-+-++|.|..|+|||+|+.++.+....+ ..+ .++++-+++. ..+.+++.++...-... ....+..
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 3568899999999999999998876532 112 4566666544 46677777776542211 1111111
Q ss_pred ---HHHHHHHHHHh--cCCeEEEEEeCCC
Q 044858 238 ---VRAWRLLEQLK--KETKILIILDDIW 261 (426)
Q Consensus 238 ---~~~~~l~~~l~--~~k~~LlVlDdv~ 261 (426)
-....+-+++. +++++||++||+-
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslT 250 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMT 250 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChH
Confidence 12234556665 5799999999984
No 409
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.57 E-value=0.025 Score=47.46 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.9
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
.++..+|.++|.+|+||||+|..++......
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 4566799999999999999999999987654
No 410
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.56 E-value=0.084 Score=47.73 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=71.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCcc----------ceEEEEEecCCc-CHHHHHHHHHHHhCCCc-c---------
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLF----------EKVISSRVSQTP-QIKEIQREIAEKLGLKI-D--------- 232 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----------~~~~wv~v~~~~-~~~~il~~i~~~l~~~~-~--------- 232 (426)
+-.|+|++|+|||+|+.++.-.......| ..+++++...+. .+.+=+..+...++... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56799999999999999998765422111 134555544432 22333333333332100 0
Q ss_pred -------c---cCcHHHHHHHHHHHhcCCeEEEEEeCCCC--------ccChhhhcCCCC--CCCCCeEEEEeecchhhh
Q 044858 233 -------Q---ESESVRAWRLLEQLKKETKILIILDDIWG--------SLDLEAIGIPLA--DDNGGCKVLLTARSQDVL 292 (426)
Q Consensus 233 -------~---~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--------~~~~~~l~~~l~--~~~~~s~iivTtr~~~va 292 (426)
. ......+..+.+.+...+.-+||+|-+.. ......+...+. ....|+.||+++......
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 01223444555555444678999996532 111222222111 123477788887765321
Q ss_pred h--------------ccCCceeeEEccCCCHHHHHH
Q 044858 293 S--------------CEMDCQQNFVVDVLNDKEAWS 314 (426)
Q Consensus 293 ~--------------~~~~~~~~~~l~~L~~~e~~~ 314 (426)
. ........+.+.+.+++++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 001123467777777777766
No 411
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.56 E-value=0.024 Score=53.28 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=60.7
Q ss_pred ccccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC----c---CHH
Q 044858 151 MHFESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT----P---QIK 217 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~----~---~~~ 217 (426)
..|+|-++.++++++.+. +..-+++.++||.|.|||||++.+.+-.+. | .+|.-...+ + =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 368999999999999886 345689999999999999999999887764 3 333322111 1 134
Q ss_pred HHHHHHHHHhCCCccccCcHHHHHHHHHHH
Q 044858 218 EIQREIAEKLGLKIDQESESVRAWRLLEQL 247 (426)
Q Consensus 218 ~il~~i~~~l~~~~~~~~~~~~~~~l~~~l 247 (426)
++-.++.+.++......-......++.+..
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y 165 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEY 165 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHh
Confidence 555566666766554433333334444444
No 412
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.56 E-value=0.043 Score=51.47 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHH
Q 044858 153 FESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ 220 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il 220 (426)
++-+......++.++..+ +.|.|.|++|+||||+|+.+....... .+.|..+...+..++.
T Consensus 47 y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 444445566677777543 358999999999999999999887532 2355555555554443
No 413
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.56 E-value=0.067 Score=52.22 Aligned_cols=88 Identities=22% Similarity=0.335 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCC-------ccccCcHH------
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK-------IDQESESV------ 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~-------~~~~~~~~------ 238 (426)
-..++|.|..|+|||||++.+...... ...++.....+...+.++....+..-+.. ...++...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 357899999999999999988876542 22233322233445566666554432211 11111111
Q ss_pred HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 ~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++||++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 122344444 257899999999853
No 414
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.55 E-value=0.1 Score=51.16 Aligned_cols=90 Identities=19% Similarity=0.317 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcHH-----
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESESV----- 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~~----- 238 (426)
-+-++|.|.+|+|||||+.++......+ +-..++++-++.. ..+.+++.++...-... ....+...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999988776542 2246667777544 45677777775432211 11111111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEeCCCC
Q 044858 239 -RAWRLLEQLK--KETKILIILDDIWG 262 (426)
Q Consensus 239 -~~~~l~~~l~--~~k~~LlVlDdv~~ 262 (426)
....+-+++. +++++||++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 2234555563 47899999999853
No 415
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.54 E-value=0.01 Score=48.62 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999997643
No 416
>PRK14531 adenylate kinase; Provisional
Probab=95.53 E-value=0.046 Score=47.22 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..|.|+|++|+||||+++.+.....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999988764
No 417
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.53 E-value=0.042 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.524 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988753
No 418
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.53 E-value=0.077 Score=45.69 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=65.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEE--EEEecCCcCHHHHHHHHH--H--HhCCC--ccccCc---HHH-
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVI--SSRVSQTPQIKEIQREIA--E--KLGLK--IDQESE---SVR- 239 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~--wv~v~~~~~~~~il~~i~--~--~l~~~--~~~~~~---~~~- 239 (426)
...|.|+|..|-||||.|.-+.-+....+ +.+.+ |..-........++..+- . +.+.. ....+. ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G-~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG-KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 46799999999999999998887765433 22222 222222344455554421 0 01111 111111 111
Q ss_pred ---HHHHHHHHhcCCeEEEEEeCCCCc-----cChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 240 ---AWRLLEQLKKETKILIILDDIWGS-----LDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 240 ---~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
.....+.+..++-=|||||++-.. -+.+++...+.....+.-||+|-|+..-
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 223344444555569999998533 2344444444444457789999998643
No 419
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.53 E-value=0.06 Score=45.72 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 154 ESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 154 ~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|....+.++++.+. .....-|.|+|..|+||+.+|+.+++...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 455555555555443 12224567999999999999999998644
No 420
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.52 E-value=0.066 Score=52.92 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCCc--------------cccCc
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKI--------------DQESE 236 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~~--------------~~~~~ 236 (426)
-+-++|.|.+|+|||+|+.++....... +=+.++++-+++.. ...++...++..-.... ..++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 3568999999999999999988774321 12677787776554 56777777765211110 01111
Q ss_pred H------HHHHHHHHHHhc-C-CeEEEEEeCCCC
Q 044858 237 S------VRAWRLLEQLKK-E-TKILIILDDIWG 262 (426)
Q Consensus 237 ~------~~~~~l~~~l~~-~-k~~LlVlDdv~~ 262 (426)
. .....+-+++.. + +++||++||+-.
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 1 122345566643 4 499999999853
No 421
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.51 E-value=0.015 Score=48.71 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN 200 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 200 (426)
.++++|+|..|+|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47899999999999999999999888754
No 422
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.51 E-value=0.042 Score=56.49 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=32.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEEEEecCCcCHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
.++..|.|.+|+||||++..+....... ..-...+.+..+...-...+...+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~ 219 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESL 219 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHH
Confidence 3688999999999999999988765331 111234555554443344444444
No 423
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.011 Score=49.40 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVG 193 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~ 193 (426)
.|+|+|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 424
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.50 E-value=0.055 Score=52.74 Aligned_cols=86 Identities=22% Similarity=0.402 Sum_probs=49.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcHH-----
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESESV----- 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~~----- 238 (426)
-..++|.|..|+|||||++.+...... +..+...+... ..+.++.......-... ....+...
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~~----~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTEA----DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC----CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 357899999999999999988865432 33344445443 34555555554332111 11111111
Q ss_pred -HHHHHHHHH-hcCCeEEEEEeCCC
Q 044858 239 -RAWRLLEQL-KKETKILIILDDIW 261 (426)
Q Consensus 239 -~~~~l~~~l-~~~k~~LlVlDdv~ 261 (426)
....+-+++ .+++++||++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 122334444 25789999999984
No 425
>PRK05922 type III secretion system ATPase; Validated
Probab=95.50 E-value=0.098 Score=51.13 Aligned_cols=87 Identities=20% Similarity=0.333 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCc-------cccCcHH-----
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKI-------DQESESV----- 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~-------~~~~~~~----- 238 (426)
-..++|.|..|+|||||.+.+..... .+...++.++. .....+.+.+......... ..++...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999987543 23333333333 3344555555544332211 1111111
Q ss_pred -HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 -RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 -~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++|+++||+-.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122344444 358999999999854
No 426
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.49 E-value=0.031 Score=52.49 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=33.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~ 221 (426)
.+++.+.|.||+||||+|....-.....+ ..+.-|+..+..++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhc
Confidence 46899999999999999999766655443 3356666655554444433
No 427
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.48 E-value=0.023 Score=47.56 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=27.5
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 160 LKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+++|.+.+.+ ++++++|..|+|||||...+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4566666554 689999999999999999998764
No 428
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.48 E-value=0.029 Score=53.65 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=57.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHH-HHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKE-IQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~-il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
....|.|.|+.|+||||+.+.+.+.... +....++. +.++..... -...+..+-.. ..........+...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~t-iEdp~E~~~~~~~~~i~q~ev---g~~~~~~~~~l~~~lr- 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIIT-IEDPIEYVHRNKRSLINQREV---GLDTLSFANALRAALR- 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEE-EcCChhhhccCccceEEcccc---CCCCcCHHHHHHHhhc-
Confidence 3478999999999999999998876542 23333332 222211100 00000001000 1111112223334444
Q ss_pred CCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 250 ETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 250 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
..+=+|++|++.+.+.+...... ...|..++.|......
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 46889999999887666542221 2335556666665544
No 429
>PRK14530 adenylate kinase; Provisional
Probab=95.48 E-value=0.013 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.|.|+|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987764
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.48 E-value=0.11 Score=49.08 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..++.++|+.|+||||++..+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999887764
No 431
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.48 E-value=0.057 Score=52.99 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCC-------ccccCcHH-----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK-------IDQESESV----- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~-------~~~~~~~~----- 238 (426)
+-..++|.|..|+|||||++.+....... ..++...-.+...+.++.+.+...-+.. ....+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 44679999999999999999998655421 2344433344455666666665442211 11111111
Q ss_pred -HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 -RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 -~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122334444 358999999999853
No 432
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.12 Score=47.03 Aligned_cols=95 Identities=21% Similarity=0.349 Sum_probs=61.1
Q ss_pred ccCCcccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 146 STQDFMHFESRKSTLKGILDALS----N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 146 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
|...+.++-|-+..+.+|.+... . ..++=|.++|.+|.|||-||+.|+|..... |-.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRv------- 250 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRV------- 250 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhh-------
Confidence 33445667778888888777654 1 245667799999999999999999876543 3211
Q ss_pred CcCHHHHHHHHHH-HhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 213 TPQIKEIQREIAE-KLGLKIDQESESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 213 ~~~~~~il~~i~~-~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
+-.++++ ++|. -..++.++++.....-+.++++|+++
T Consensus 251 ------vGseLiQkylGd------GpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 251 ------VGSELIQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred ------hhHHHHHHHhcc------chHHHHHHHHHHHhcCCceEEeehhh
Confidence 1112221 2221 12355666666666678899999885
No 433
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.47 E-value=0.063 Score=52.47 Aligned_cols=90 Identities=23% Similarity=0.356 Sum_probs=52.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCc-------cccCcHH-----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKI-------DQESESV----- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~-------~~~~~~~----- 238 (426)
+-..++|.|..|+|||||+..+....+.. ..++...-.+.....+++...+..-+... ...+...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 34578999999999999999998765431 22333222334667777776665433211 1111111
Q ss_pred -HHHHHHHHH-hcCCeEEEEEeCCCCc
Q 044858 239 -RAWRLLEQL-KKETKILIILDDIWGS 263 (426)
Q Consensus 239 -~~~~l~~~l-~~~k~~LlVlDdv~~~ 263 (426)
....+.+++ .++++.||++||+-..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 112233333 2478999999999644
No 434
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.47 E-value=0.081 Score=48.33 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhhhcCccceE-EEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 173 NMIGVYGMGGIGKTTLV-KEVGRQAKENNLFEKV-ISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
+-+.|.|..|+|||+|| ..+.+... -+.+ +++-+.+. ....++..++...-... ...++...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 55555432 2333 56666554 45666776666432111 11111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCCCCc-cChhhhc
Q 044858 239 --RAWRLLEQLK-KETKILIILDDIWGS-LDLEAIG 270 (426)
Q Consensus 239 --~~~~l~~~l~-~~k~~LlVlDdv~~~-~~~~~l~ 270 (426)
....+-+++. +++++||++||+-.. ..++++.
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 1123333332 479999999999644 4455543
No 435
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.45 E-value=0.072 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+-..++|+|+.|+|||||++.+.....
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446799999999999999999976543
No 436
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.43 E-value=0.047 Score=47.58 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988765
No 437
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.42 E-value=0.013 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.|++|+|++|+|||||.+.+..-..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 46899999999999999999876543
No 438
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.041 Score=51.92 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+-|.++|++|.|||-||+.|+.....
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 56889999999999999999988764
No 439
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.42 E-value=0.011 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~ 196 (426)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.42 E-value=0.11 Score=52.25 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=51.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcc------------------
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID------------------ 232 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~------------------ 232 (426)
.-+++.|.|++|+||||||.++...-..+ .=...+|++... +..++.+.. .+++....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHHH-HHcCCCHHHHhhcCceEEEecCchhc
Confidence 34689999999999999999986553221 013567777753 344444443 33332111
Q ss_pred ------ccCcHHHHHHHHHHHhcCCeEEEEEeCC
Q 044858 233 ------QESESVRAWRLLEQLKKETKILIILDDI 260 (426)
Q Consensus 233 ------~~~~~~~~~~l~~~l~~~k~~LlVlDdv 260 (426)
..+.......+...+..+++-.+|||.+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 0111234455666666666778888954
No 441
>PRK13949 shikimate kinase; Provisional
Probab=95.41 E-value=0.013 Score=49.85 Aligned_cols=24 Identities=42% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-|.|+|+.|+||||+++.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998765
No 442
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.063 Score=47.14 Aligned_cols=119 Identities=24% Similarity=0.335 Sum_probs=63.7
Q ss_pred HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEEEEecCCcCHHHHHHHHHHHh--------CCCccc
Q 044858 163 ILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQTPQIKEIQREIAEKL--------GLKIDQ 233 (426)
Q Consensus 163 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~~~~~il~~i~~~l--------~~~~~~ 233 (426)
++..+-+..-....|.|++|+|||||.+.+..-.... ..|...--+-+.... +|+..+ +...+-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers-------EIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS-------EIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc-------hhhccccCCchhhhhhhhhh
Confidence 4444444555557899999999999999998765432 234321111111111 121111 111111
Q ss_pred cCcHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 234 ESESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 234 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
.+..-..+-+...+.+--+=++|+|++-..++-..+...+ ..|.++|.|..-..+
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 1111112233334444457799999998776655554443 458888887765544
No 443
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.41 E-value=0.013 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999997654
No 444
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.41 E-value=0.079 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987654
No 445
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.40 E-value=0.015 Score=48.75 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEE
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVIS 207 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 207 (426)
+++|+|+.|+|||||+..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 57899999999999999999987653 3444333
No 446
>PRK13947 shikimate kinase; Provisional
Probab=95.40 E-value=0.014 Score=49.79 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|.|+|++|+||||+++.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987653
No 447
>PRK06851 hypothetical protein; Provisional
Probab=95.40 E-value=0.23 Score=47.62 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=32.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 213 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 213 (426)
+-.+++.|.|++|+|||||+..++.....++ ++..++-|.+.+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G-~~v~~~hC~~dP 254 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERG-FDVEVYHCGFDP 254 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCC-CeEEEEeCCCCC
Confidence 3457899999999999999999999886643 655555554443
No 448
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.39 E-value=0.044 Score=55.48 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=36.3
Q ss_pred cccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 150 FMHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...++|+...+.++.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3457788777777766665 22334688999999999999999998754
No 449
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.38 E-value=0.061 Score=47.24 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+....|+|+|.+|+|||||...+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 345689999999999999999988763
No 450
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.1 Score=55.27 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=73.8
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcccc---
Q 044858 158 STLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQE--- 234 (426)
Q Consensus 158 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~--- 234 (426)
....+|++.+.++ .|+.|.|+.|+||||-.-+++.+..- .....+-++=++.-....+-+.+++.++......
T Consensus 53 ~~~~~i~~ai~~~--~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 53 AVRDEILKAIEQN--QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred HHHHHHHHHHHhC--CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 3456666666654 67999999999999999888766542 1223444443444456667788888887543211
Q ss_pred -----------------CcHHHHHHHH-HHHhcCCeEEEEEeCCCCccChhh-----hcCCCCCCCCCeEEEEeecchhh
Q 044858 235 -----------------SESVRAWRLL-EQLKKETKILIILDDIWGSLDLEA-----IGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 235 -----------------~~~~~~~~l~-~~l~~~k~~LlVlDdv~~~~~~~~-----l~~~l~~~~~~s~iivTtr~~~v 291 (426)
++..++..+. +.++. +--.||+|++++..--.+ +...+....+.-||||+|=.-+.
T Consensus 129 ~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls-~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 129 SIRFESKVSPRTRIKVMTDGILLREIQNDPLLS-GYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred EEEeeccCCCCceeEEeccHHHHHHHhhCcccc-cCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCH
Confidence 1222233333 22222 345899999986522111 11112222224899999866543
No 451
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.37 E-value=0.03 Score=48.78 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=32.1
Q ss_pred cccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 150 FMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+.+++|.+..+..+.-..... .-+.++|++|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHh
Confidence 446778887777766655543 56899999999999999998754
No 452
>PRK14529 adenylate kinase; Provisional
Probab=95.35 E-value=0.069 Score=47.49 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=45.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCccce--EEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFEK--VISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
|.|.|++|+||||+++.+....... +... .+.-.+..........++++.+- ..-++......+.+.+.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G----~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRG----DLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhcc----CcchHHHHHHHHHHHHhccCC
Confidence 7889999999999999998877532 2211 11112222223333444444321 112233334445555543224
Q ss_pred EEEEEeCCCC
Q 044858 253 ILIILDDIWG 262 (426)
Q Consensus 253 ~LlVlDdv~~ 262 (426)
-=+|||+.-.
T Consensus 78 ~g~iLDGfPR 87 (223)
T PRK14529 78 NGWLLDGFPR 87 (223)
T ss_pred CcEEEeCCCC
Confidence 4588999853
No 453
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.1 Score=55.16 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=59.1
Q ss_pred ccchHHHHHHHHHHhcc-------C-CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 153 FESRKSTLKGILDALSN-------R-NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~-------~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
++|.++.+..|.+.+.. . +...+.+.|+.|+|||.||+.+....-. ..+..+-++.|.. .. +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg--se~~~IriDmse~------~e-vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG--SEENFIRLDMSEF------QE-VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC--CccceEEechhhh------hh-hh
Confidence 34555555555555541 1 3446788999999999999999887642 2344444444432 11 22
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
+-.+.+ +.--..+...++.+.+.+.-..+|+||||...
T Consensus 635 kligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 635 KLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 222322 22222234557777787644468889999754
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.35 E-value=0.015 Score=51.27 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
....|.|+|++|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4678999999999999999999754
No 455
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.33 E-value=0.017 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 456
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.32 E-value=0.011 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.+++|+|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999843
No 457
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.32 E-value=0.016 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987764
No 458
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.31 E-value=0.052 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987754
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.30 E-value=0.016 Score=44.93 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVG 193 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~ 193 (426)
..++|.|+.|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999976
No 460
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.30 E-value=0.18 Score=45.59 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
.++.|.|.+|+|||+++.++......+. =..++|++... +..++...++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 5889999999999999999877665431 22456666544 45566666543
No 461
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.015 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|++|+|||||++.+.--.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Confidence 3579999999999999999987543
No 462
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.29 E-value=0.018 Score=49.21 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34699999999999999999998754
No 463
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.27 E-value=0.27 Score=48.74 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=30.3
Q ss_pred HHHHHHHHHhc-----cCC--ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 158 STLKGILDALS-----NRN--FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 158 ~~~~~l~~~l~-----~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.-+.++-.||. .++ .+++.|+|++|+||||.++.+.....
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 34555666665 333 45999999999999999999987765
No 464
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.23 E-value=0.11 Score=46.33 Aligned_cols=47 Identities=28% Similarity=0.187 Sum_probs=33.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
..++.|.|.+|+|||+++.++......+ =..++|++... +..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHH
Confidence 4688999999999999999987664332 24566777755 34444444
No 465
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.22 E-value=0.087 Score=51.53 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=51.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
+-..++|.|..|+|||||++.+.+... .+..++..+.. ...+.+++.+....-... ....+...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999887543 34445555544 445556666554311100 01111111
Q ss_pred --HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 --RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 --~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++||++||+-.
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122344444 258899999999853
No 466
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.016 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--+++|+|++|+|||||.+.+.--.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999997543
No 467
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.21 E-value=0.016 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~ 195 (426)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 468
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.21 E-value=0.084 Score=51.43 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHHHhc-------c----C-------CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALS-------N----R-------NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~-------~----~-------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|.++.++.+...+. . . ....+.++|++|+|||+||+.+.....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 35787777776654441 1 1 124789999999999999999987654
No 469
>PHA02774 E1; Provisional
Probab=95.20 E-value=0.051 Score=54.54 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=33.2
Q ss_pred HHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe
Q 044858 159 TLKGILDALSN-RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV 210 (426)
Q Consensus 159 ~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 210 (426)
-+..+..++.. ++...+.|+|++|+|||.+|..+.+-.. -..+.|++.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 34455555543 3345899999999999999999998764 223456664
No 470
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.20 E-value=0.049 Score=47.62 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=25.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
.++-++..|.|++|+||||++..+.......
T Consensus 15 ~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 15 TSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred hcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3445788999999999999999988877654
No 471
>PRK13695 putative NTPase; Provisional
Probab=95.18 E-value=0.03 Score=47.86 Aligned_cols=25 Identities=48% Similarity=0.693 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|+|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999887654
No 472
>PLN02200 adenylate kinase family protein
Probab=95.11 E-value=0.021 Score=51.36 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+.+|.|.|++|+||||+|+.+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999987653
No 473
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.10 E-value=0.19 Score=46.07 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=50.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
+..+++++|+.|+||||++..+......+. ..+.+++..... ....-++...+.++.+.....+...+...++.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 447899999999999999999877654321 234455543221 12222333344444443332233334444444542
Q ss_pred -CCeEEEEEeCCCC
Q 044858 250 -ETKILIILDDIWG 262 (426)
Q Consensus 250 -~k~~LlVlDdv~~ 262 (426)
.+.=++++|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2345788898743
No 474
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.10 E-value=0.02 Score=51.60 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=23.0
Q ss_pred EEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 177 VYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 177 I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
|+||+|+||||+++.+.+.....+ ..++-|+..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcch
Confidence 689999999999999999876543 2344455433
No 475
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.07 E-value=0.17 Score=51.37 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=53.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc----------------cC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ----------------ES 235 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~----------------~~ 235 (426)
-.++.|.|.+|+|||+|+.++....... -..++|++.... ..++.+.. .+++.+... ..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4688899999999999999998765433 356778876543 44554443 344432110 11
Q ss_pred cHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 236 ESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 236 ~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
.......+.+.+...+.-++|+|.+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 12334455555555556689999984
No 476
>PRK13948 shikimate kinase; Provisional
Probab=95.06 E-value=0.026 Score=48.62 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.....|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998764
No 477
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.05 E-value=0.075 Score=51.46 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 152 HFESRKSTLKGILDALSN--------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.++|.++.++.+..++.+ ..+..|.++|++|+|||+||+.+......
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 366777777776655532 12467899999999999999999887653
No 478
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.05 E-value=0.034 Score=46.71 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
+++.|+|..|+|||||+..+.......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887654
No 479
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.04 E-value=0.077 Score=51.89 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+-..++|.|..|+|||||++.+.....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC
Confidence 346799999999999999999877543
No 480
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.03 E-value=0.062 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++..|.|.+|+||||++..+.....
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999877654
No 481
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.02 E-value=0.03 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..++.|.|+.|.||||+.+.+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998644
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.01 E-value=0.12 Score=50.99 Aligned_cols=88 Identities=16% Similarity=0.310 Sum_probs=48.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC-------CCccccCcHH-----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG-------LKIDQESESV----- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~-------~~~~~~~~~~----- 238 (426)
+-..++|+|..|+|||||++.+....... ...+++.--+..+..++....+..-+ ......+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 44689999999999999999888765431 23344333333345554443222111 0111111111
Q ss_pred -HHHHHHHHH-hcCCeEEEEEeCCC
Q 044858 239 -RAWRLLEQL-KKETKILIILDDIW 261 (426)
Q Consensus 239 -~~~~l~~~l-~~~k~~LlVlDdv~ 261 (426)
....+-+++ .+++++||++||+-
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChH
Confidence 122334444 35899999999984
No 483
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.00 E-value=0.17 Score=49.70 Aligned_cols=88 Identities=19% Similarity=0.362 Sum_probs=51.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCCc-------cccCcHH----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DQESESV---- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~~-------~~~~~~~---- 238 (426)
+-..++|+|..|+|||||++.+..... .+.++...+... .+..++...+...-+... ...+...
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999876432 234444444433 345566655554432211 1111111
Q ss_pred --HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 --RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 --~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++||++||+-.
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 122334444 258999999999853
No 484
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.00 E-value=0.021 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-+++|+|++|+|||||...+.--.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 579999999999999999987543
No 485
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.00 E-value=0.081 Score=51.65 Aligned_cols=88 Identities=18% Similarity=0.367 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
+-..++|+|..|+|||||++.+...... +..+...+.. .....++..+.+.+-+.. ....+...
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 3467999999999999999988875432 2222233333 334555555544432211 11111111
Q ss_pred --HHHHHHHHH-hcCCeEEEEEeCCCC
Q 044858 239 --RAWRLLEQL-KKETKILIILDDIWG 262 (426)
Q Consensus 239 --~~~~l~~~l-~~~k~~LlVlDdv~~ 262 (426)
....+-+++ .+++++||++||+-.
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 122334444 358999999999853
No 486
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=94.96 E-value=0.11 Score=51.23 Aligned_cols=86 Identities=20% Similarity=0.367 Sum_probs=47.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCC-------ccccCcHH-----
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLK-------IDQESESV----- 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~-------~~~~~~~~----- 238 (426)
-..++|.|..|+|||||++.+...... +......+.. .....++..+.+..-+.. ....+...
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~~~----~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~ 238 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNTEA----DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGA 238 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC----CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 457899999999999999988876432 2223333332 334444554443321110 01111111
Q ss_pred -HHHHHHHHH-hcCCeEEEEEeCCC
Q 044858 239 -RAWRLLEQL-KKETKILIILDDIW 261 (426)
Q Consensus 239 -~~~~l~~~l-~~~k~~LlVlDdv~ 261 (426)
....+-+++ .+++++||++||+-
T Consensus 239 ~~a~t~AE~frd~G~~Vll~~DslT 263 (440)
T TIGR01026 239 YVATAIAEYFRDQGKDVLLLMDSVT 263 (440)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 112233333 35889999999984
No 487
>PRK13946 shikimate kinase; Provisional
Probab=94.96 E-value=0.025 Score=48.94 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+.|.++|+.|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998874
No 488
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.026 Score=46.87 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLK 230 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~ 230 (426)
.++++|+|.+|+||||+.+.+.... .. +.. .+..++.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~i---------vNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HKI---------VNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--cee---------eeHhHHHHHHHHHhCCc
Confidence 5789999999999999999887766 11 111 13456666666665543
No 489
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.93 E-value=0.048 Score=51.52 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred cccccchHHHHHH---HHHHhccCC--ccEEEEEcCCCCcHHHHHHHHHHHhhhcCcc
Q 044858 150 FMHFESRKSTLKG---ILDALSNRN--FNMIGVYGMGGIGKTTLVKEVGRQAKENNLF 202 (426)
Q Consensus 150 ~~~~~gR~~~~~~---l~~~l~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 202 (426)
..+++|..+..+. +++...+++ -+.|.+.|++|.|||+||..+.+....+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4578887655443 455555554 4789999999999999999999998765444
No 490
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.91 E-value=0.034 Score=51.17 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN 200 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 200 (426)
++|+|+|.+|+|||||+..+......++
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5799999999999999999999987654
No 491
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.90 E-value=0.038 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+.|+|+.|+|||||++.+.....
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 36899999999999999999887654
No 492
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.88 E-value=0.025 Score=48.51 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++.|+|+.|+|||||++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 493
>PRK04182 cytidylate kinase; Provisional
Probab=94.88 E-value=0.025 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988754
No 494
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.85 E-value=0.17 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
++..|+|+.|.|||++.+.+.-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999753
No 495
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.83 E-value=0.024 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+++|+|+.|+|||||.+.+.....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 5799999999999999999887654
No 496
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.82 E-value=0.15 Score=47.76 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=40.6
Q ss_pred cccccchHHHHHH---HHHHhccCC--ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccce
Q 044858 150 FMHFESRKSTLKG---ILDALSNRN--FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK 204 (426)
Q Consensus 150 ~~~~~gR~~~~~~---l~~~l~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 204 (426)
..+|+|..+..+. +++...+++ -+.|.|+|++|.|||+||-.+.+.....-+|..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 4567886654432 455555442 468999999999999999999999887777753
No 497
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.82 E-value=0.073 Score=51.03 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..|+|+|+.|+|||||...+.-...
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC
Confidence 4689999999999999999876543
No 498
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.80 E-value=0.027 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987653
No 499
>PLN02348 phosphoribulokinase
Probab=94.80 E-value=0.031 Score=53.60 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+++.+|+|.|.+|+||||+|+.+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999998875
No 500
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.79 E-value=0.023 Score=51.76 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987654
Done!