Query 044858
Match_columns 426
No_of_seqs 313 out of 2325
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-40 3.7E-45 337.6 20.2 253 154-425 131-412 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-35 1.7E-39 323.8 23.2 268 147-425 120-406 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.8E-35 6.2E-40 305.4 15.5 241 153-425 130-398 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.3E-32 8E-37 279.8 24.3 264 149-424 122-405 (591)
5 2qen_A Walker-type ATPase; unk 99.7 5.1E-16 1.8E-20 147.8 18.6 196 149-355 10-250 (350)
6 2fna_A Conserved hypothetical 99.7 1.6E-15 5.4E-20 144.7 18.2 194 149-355 11-254 (357)
7 1w5s_A Origin recognition comp 99.7 5.3E-15 1.8E-19 144.1 20.1 246 150-410 21-319 (412)
8 2qby_B CDC6 homolog 3, cell di 99.5 2.2E-13 7.5E-18 131.4 19.5 218 151-369 20-270 (384)
9 2qby_A CDC6 homolog 1, cell di 99.5 3.1E-13 1.1E-17 130.2 19.0 244 150-409 19-296 (386)
10 1njg_A DNA polymerase III subu 99.5 5.2E-13 1.8E-17 119.8 16.3 199 149-355 21-232 (250)
11 2chg_A Replication factor C sm 99.5 9.2E-13 3.2E-17 116.6 16.3 191 148-354 14-207 (226)
12 3qfl_A MLA10; coiled-coil, (CC 99.5 8.4E-14 2.9E-18 109.2 8.3 79 8-93 3-82 (115)
13 2v1u_A Cell division control p 99.5 1.6E-12 5.6E-17 125.2 18.6 217 150-369 18-276 (387)
14 1fnn_A CDC6P, cell division co 99.4 1.2E-11 4.1E-16 119.2 18.3 201 151-352 17-248 (389)
15 1sxj_B Activator 1 37 kDa subu 99.3 2.1E-11 7.3E-16 114.4 13.4 190 148-352 18-211 (323)
16 1iqp_A RFCS; clamp loader, ext 99.2 1E-10 3.5E-15 109.9 12.1 188 149-354 23-215 (327)
17 2chq_A Replication factor C sm 99.1 1.6E-09 5.6E-14 101.2 15.3 186 149-352 15-205 (319)
18 3te6_A Regulatory protein SIR3 99.1 4.1E-09 1.4E-13 97.6 16.7 170 152-321 21-212 (318)
19 1jr3_A DNA polymerase III subu 99.0 3.3E-09 1.1E-13 101.5 14.1 196 149-352 14-222 (373)
20 1jbk_A CLPB protein; beta barr 98.9 3.1E-09 1.1E-13 91.3 10.2 153 149-316 20-194 (195)
21 1hqc_A RUVB; extended AAA-ATPa 98.9 8.6E-09 2.9E-13 96.7 13.3 191 149-369 10-238 (324)
22 1sxj_D Activator 1 41 kDa subu 98.9 1.4E-08 4.7E-13 96.4 12.2 197 148-351 34-235 (353)
23 3h4m_A Proteasome-activating n 98.8 7.6E-08 2.6E-12 88.4 15.9 203 147-371 13-260 (285)
24 3pvs_A Replication-associated 98.8 9.7E-08 3.3E-12 93.2 17.1 181 148-354 23-218 (447)
25 2qz4_A Paraplegin; AAA+, SPG7, 98.8 3.7E-07 1.3E-11 82.6 18.5 183 149-351 4-222 (262)
26 3bos_A Putative DNA replicatio 98.8 1.7E-08 5.7E-13 90.1 9.1 176 149-352 26-218 (242)
27 1d2n_A N-ethylmaleimide-sensit 98.8 2.9E-07 9.8E-12 84.0 17.4 180 169-373 61-265 (272)
28 1sxj_E Activator 1 40 kDa subu 98.7 6.8E-08 2.3E-12 91.7 11.2 199 149-354 12-240 (354)
29 1xwi_A SKD1 protein; VPS4B, AA 98.7 1.7E-06 5.9E-11 80.8 20.4 185 148-352 9-224 (322)
30 3d8b_A Fidgetin-like protein 1 98.7 7.5E-07 2.6E-11 84.6 17.7 184 148-352 81-296 (357)
31 3u61_B DNA polymerase accessor 98.7 1.2E-07 4.1E-12 88.8 12.1 185 148-354 23-219 (324)
32 3eie_A Vacuolar protein sortin 98.7 9.6E-07 3.3E-11 82.6 17.7 185 146-351 13-228 (322)
33 1sxj_A Activator 1 95 kDa subu 98.7 1.1E-07 3.9E-12 94.9 11.9 189 148-350 36-252 (516)
34 3pfi_A Holliday junction ATP-d 98.7 8.5E-07 2.9E-11 83.5 17.1 176 149-353 27-229 (338)
35 3uk6_A RUVB-like 2; hexameric 98.6 4.6E-07 1.6E-11 86.4 14.7 214 150-368 43-329 (368)
36 1sxj_C Activator 1 40 kDa subu 98.6 4.9E-07 1.7E-11 85.3 14.5 185 148-349 22-210 (340)
37 3vfd_A Spastin; ATPase, microt 98.6 2.6E-06 9E-11 81.8 19.3 183 148-351 112-326 (389)
38 3syl_A Protein CBBX; photosynt 98.6 1.8E-07 6.3E-12 86.9 9.8 154 152-321 32-218 (309)
39 2zan_A Vacuolar protein sortin 98.5 3.5E-06 1.2E-10 82.3 18.6 185 148-352 131-346 (444)
40 3b9p_A CG5977-PA, isoform A; A 98.5 4.3E-06 1.5E-10 77.1 18.4 184 148-352 18-234 (297)
41 2qp9_X Vacuolar protein sortin 98.5 1.7E-06 5.9E-11 82.0 15.9 183 148-351 48-261 (355)
42 1a5t_A Delta prime, HOLB; zinc 98.5 1.6E-06 5.5E-11 81.5 15.4 166 157-350 8-204 (334)
43 2z4s_A Chromosomal replication 98.5 1.1E-06 3.9E-11 85.7 14.3 203 149-369 103-332 (440)
44 4b4t_J 26S protease regulatory 98.5 7.2E-06 2.5E-10 77.9 18.1 203 146-370 143-390 (405)
45 3cf0_A Transitional endoplasmi 98.5 1.1E-05 3.6E-10 74.7 18.8 177 148-346 12-223 (301)
46 3pxg_A Negative regulator of g 98.4 1.5E-06 5.2E-11 85.5 12.7 151 149-321 178-339 (468)
47 4b4t_L 26S protease subunit RP 98.4 6E-06 2E-10 79.6 16.2 201 148-370 178-423 (437)
48 2p65_A Hypothetical protein PF 98.4 7.6E-07 2.6E-11 75.7 8.5 49 149-197 20-68 (187)
49 1l8q_A Chromosomal replication 98.4 1.9E-06 6.4E-11 80.7 11.5 167 160-347 23-204 (324)
50 1qvr_A CLPB protein; coiled co 98.4 2.4E-06 8.2E-11 90.5 13.1 158 148-320 167-345 (854)
51 4b4t_H 26S protease regulatory 98.4 1.7E-05 5.9E-10 76.3 17.7 175 148-344 206-415 (467)
52 4b4t_I 26S protease regulatory 98.3 2E-05 6.9E-10 75.1 16.9 203 146-370 177-424 (437)
53 4b4t_M 26S protease regulatory 98.3 8.3E-06 2.8E-10 78.6 14.3 176 146-343 176-386 (434)
54 1r6b_X CLPA protein; AAA+, N-t 98.3 1.9E-05 6.3E-10 82.7 17.2 157 149-320 184-362 (758)
55 4b4t_K 26S protease regulatory 98.3 3E-05 1E-09 74.6 16.8 172 148-343 169-378 (428)
56 1lv7_A FTSH; alpha/beta domain 98.2 2.6E-05 9E-10 70.2 15.3 181 148-350 9-224 (257)
57 3pxi_A Negative regulator of g 98.2 8.3E-06 2.8E-10 85.3 12.3 152 149-321 178-339 (758)
58 3ec2_A DNA replication protein 98.2 1.7E-06 5.7E-11 73.6 5.1 117 156-289 19-143 (180)
59 2gno_A DNA polymerase III, gam 98.1 8.6E-06 3E-10 75.2 9.9 144 157-320 3-152 (305)
60 3n70_A Transport activator; si 98.1 1.3E-06 4.4E-11 71.5 3.4 46 152-197 2-49 (145)
61 2ce7_A Cell division protein F 98.1 7.2E-05 2.5E-09 73.2 15.9 199 149-369 14-256 (476)
62 3hu3_A Transitional endoplasmi 98.1 0.0001 3.6E-09 72.5 16.9 180 149-350 202-414 (489)
63 1ofh_A ATP-dependent HSL prote 98.0 3E-05 1E-09 71.6 11.6 46 152-197 16-75 (310)
64 1in4_A RUVB, holliday junction 98.0 0.00055 1.9E-08 64.1 19.2 220 149-399 23-278 (334)
65 4fcw_A Chaperone protein CLPB; 98.0 1.9E-05 6.6E-10 73.1 8.7 104 153-263 19-131 (311)
66 2c9o_A RUVB-like 1; hexameric 97.9 9.3E-05 3.2E-09 72.5 13.3 49 149-197 35-88 (456)
67 2r62_A Cell division protease 97.9 1E-05 3.4E-10 73.4 5.6 175 149-345 9-219 (268)
68 2w58_A DNAI, primosome compone 97.8 7.4E-05 2.5E-09 64.5 9.1 114 158-289 36-159 (202)
69 3cf2_A TER ATPase, transitiona 97.8 0.00011 3.7E-09 76.2 11.7 152 171-344 237-407 (806)
70 3co5_A Putative two-component 97.7 6.2E-06 2.1E-10 67.2 1.1 46 152-197 5-52 (143)
71 3m6a_A ATP-dependent protease 97.7 0.00019 6.6E-09 71.7 11.9 156 153-320 83-266 (543)
72 1ixz_A ATP-dependent metallopr 97.7 0.00046 1.6E-08 61.8 12.5 149 174-344 51-221 (254)
73 3pxi_A Negative regulator of g 97.6 6.2E-05 2.1E-09 78.7 6.6 148 152-320 492-675 (758)
74 3t15_A Ribulose bisphosphate c 97.6 0.0004 1.4E-08 63.7 10.9 27 171-197 35-61 (293)
75 1ojl_A Transcriptional regulat 97.5 0.00015 5E-09 67.0 7.5 46 152-197 3-50 (304)
76 2x8a_A Nuclear valosin-contain 97.5 0.0023 7.9E-08 57.9 15.2 153 149-321 8-192 (274)
77 1iy2_A ATP-dependent metallopr 97.5 0.00094 3.2E-08 60.7 12.2 175 148-344 37-245 (278)
78 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00023 7.8E-09 74.4 8.9 45 152-196 459-512 (758)
79 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0017 5.7E-08 63.9 13.9 175 148-344 28-236 (499)
80 1n0w_A DNA repair protein RAD5 97.4 0.0012 4E-08 58.4 10.7 91 172-263 24-131 (243)
81 3io5_A Recombination and repai 97.3 0.0016 5.6E-08 59.5 11.5 85 174-263 30-123 (333)
82 1jr3_D DNA polymerase III, del 97.3 0.0029 1E-07 59.2 13.3 159 170-350 16-184 (343)
83 2cvh_A DNA repair and recombin 97.3 0.0022 7.6E-08 55.6 11.3 85 172-263 20-117 (220)
84 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00068 2.3E-08 59.5 8.0 46 173-222 24-69 (235)
85 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00064 2.2E-08 62.4 6.9 69 173-263 124-194 (331)
86 1v5w_A DMC1, meiotic recombina 97.2 0.0027 9.1E-08 59.6 11.3 90 172-262 122-230 (343)
87 2z43_A DNA repair and recombin 97.1 0.002 7E-08 59.8 9.9 90 172-262 107-214 (324)
88 3hr8_A Protein RECA; alpha and 97.1 0.0025 8.6E-08 59.7 10.5 85 172-263 61-151 (356)
89 1qvr_A CLPB protein; coiled co 97.1 0.00058 2E-08 72.2 6.6 46 152-197 559-613 (854)
90 2i1q_A DNA repair and recombin 97.0 0.0028 9.4E-08 58.9 10.2 89 172-261 98-214 (322)
91 1ypw_A Transitional endoplasmi 97.0 0.0041 1.4E-07 65.2 12.4 153 149-321 202-386 (806)
92 3lda_A DNA repair protein RAD5 97.0 0.003 1E-07 60.3 10.2 89 173-262 179-284 (400)
93 2kjq_A DNAA-related protein; s 97.0 0.0012 4E-08 53.9 6.1 39 171-211 35-73 (149)
94 2qgz_A Helicase loader, putati 97.0 0.0013 4.3E-08 60.8 6.9 53 156-210 133-189 (308)
95 2zr9_A Protein RECA, recombina 96.9 0.0039 1.3E-07 58.5 10.1 84 172-262 61-150 (349)
96 3cf2_A TER ATPase, transitiona 96.9 0.00097 3.3E-08 69.1 6.4 173 149-343 475-682 (806)
97 2px0_A Flagellar biosynthesis 96.9 0.0045 1.5E-07 56.7 10.0 87 171-260 104-191 (296)
98 1xp8_A RECA protein, recombina 96.9 0.0055 1.9E-07 57.8 10.5 84 172-262 74-163 (366)
99 4a74_A DNA repair and recombin 96.8 0.0087 3E-07 52.2 10.7 89 173-262 26-136 (231)
100 1u94_A RECA protein, recombina 96.8 0.006 2.1E-07 57.3 10.0 83 172-261 63-151 (356)
101 1rz3_A Hypothetical protein rb 96.7 0.0019 6.5E-08 55.5 5.5 43 156-198 3-48 (201)
102 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0051 1.8E-07 59.5 8.8 88 173-261 152-255 (473)
103 3ice_A Transcription terminati 96.6 0.0023 8E-08 60.0 5.7 99 162-261 163-271 (422)
104 1g8p_A Magnesium-chelatase 38 96.6 0.0013 4.5E-08 61.7 3.9 51 147-197 20-70 (350)
105 1pzn_A RAD51, DNA repair and r 96.6 0.01 3.5E-07 55.6 10.0 91 172-263 131-243 (349)
106 3c8u_A Fructokinase; YP_612366 96.5 0.0028 9.5E-08 54.8 5.6 41 158-198 6-48 (208)
107 3dm5_A SRP54, signal recogniti 96.5 0.017 5.8E-07 55.6 11.2 28 171-198 99-126 (443)
108 2bjv_A PSP operon transcriptio 96.5 0.002 6.9E-08 57.9 4.5 48 150-197 5-54 (265)
109 2ehv_A Hypothetical protein PH 96.4 0.011 3.8E-07 52.2 8.8 24 172-195 30-53 (251)
110 2r44_A Uncharacterized protein 96.4 0.0067 2.3E-07 56.4 7.3 44 152-197 28-71 (331)
111 1qhx_A CPT, protein (chloramph 96.4 0.0023 8E-08 53.5 3.8 25 173-197 4-28 (178)
112 3bh0_A DNAB-like replicative h 96.3 0.027 9.3E-07 51.9 11.1 50 173-226 69-118 (315)
113 1fx0_B ATP synthase beta chain 96.3 0.017 5.8E-07 56.0 9.8 88 173-261 166-276 (498)
114 3kl4_A SRP54, signal recogniti 96.3 0.027 9.3E-07 54.1 11.3 29 171-199 96-124 (433)
115 2xxa_A Signal recognition part 96.3 0.024 8.2E-07 54.7 10.9 29 171-199 99-127 (433)
116 3tqc_A Pantothenate kinase; bi 96.3 0.021 7.1E-07 52.7 10.0 27 171-197 91-117 (321)
117 3kb2_A SPBC2 prophage-derived 96.3 0.0026 8.9E-08 52.8 3.6 25 173-197 2-26 (173)
118 2ck3_D ATP synthase subunit be 96.2 0.025 8.7E-07 54.5 10.7 88 173-261 154-263 (482)
119 2dr3_A UPF0273 protein PH0284; 96.2 0.02 6.8E-07 50.4 9.4 46 173-222 24-69 (247)
120 3lw7_A Adenylate kinase relate 96.2 0.0024 8.4E-08 53.0 3.1 20 173-192 2-21 (179)
121 1ly1_A Polynucleotide kinase; 96.2 0.003 1E-07 52.8 3.5 22 173-194 3-24 (181)
122 1vma_A Cell division protein F 96.1 0.026 8.8E-07 51.8 9.9 88 171-262 103-197 (306)
123 3vaa_A Shikimate kinase, SK; s 96.1 0.0035 1.2E-07 53.7 3.9 26 172-197 25-50 (199)
124 2hf9_A Probable hydrogenase ni 96.1 0.0058 2E-07 53.3 5.3 38 160-197 26-63 (226)
125 1kgd_A CASK, peripheral plasma 96.1 0.0033 1.1E-07 52.9 3.4 25 173-197 6-30 (180)
126 1zp6_A Hypothetical protein AT 96.1 0.0034 1.2E-07 53.2 3.5 24 172-195 9-32 (191)
127 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.0044 1.5E-07 61.0 4.6 44 152-197 23-66 (500)
128 3uie_A Adenylyl-sulfate kinase 96.1 0.0042 1.4E-07 53.2 4.0 28 170-197 23-50 (200)
129 2rhm_A Putative kinase; P-loop 96.1 0.0043 1.5E-07 52.6 4.0 26 171-196 4-29 (193)
130 3trf_A Shikimate kinase, SK; a 96.0 0.0041 1.4E-07 52.4 3.8 26 172-197 5-30 (185)
131 3e70_C DPA, signal recognition 96.0 0.058 2E-06 49.9 11.8 58 170-229 127-185 (328)
132 1kag_A SKI, shikimate kinase I 96.0 0.0034 1.2E-07 52.2 3.1 25 173-197 5-29 (173)
133 3t61_A Gluconokinase; PSI-biol 96.0 0.0042 1.4E-07 53.2 3.7 25 172-196 18-42 (202)
134 4eun_A Thermoresistant glucoki 96.0 0.0045 1.6E-07 53.0 3.9 27 170-196 27-53 (200)
135 2j37_W Signal recognition part 96.0 0.073 2.5E-06 52.2 12.9 28 171-198 100-127 (504)
136 1odf_A YGR205W, hypothetical 3 96.0 0.0073 2.5E-07 55.0 5.4 81 170-250 29-117 (290)
137 3tau_A Guanylate kinase, GMP k 96.0 0.0046 1.6E-07 53.4 3.8 27 171-197 7-33 (208)
138 1nks_A Adenylate kinase; therm 95.9 0.0046 1.6E-07 52.3 3.7 26 173-198 2-27 (194)
139 1kht_A Adenylate kinase; phosp 95.9 0.005 1.7E-07 52.0 3.8 25 173-197 4-28 (192)
140 3iij_A Coilin-interacting nucl 95.9 0.0047 1.6E-07 51.8 3.5 26 172-197 11-36 (180)
141 3cmu_A Protein RECA, recombina 95.9 0.015 5.1E-07 65.7 8.3 95 160-261 1415-1515(2050)
142 3aez_A Pantothenate kinase; tr 95.9 0.022 7.6E-07 52.4 8.2 29 170-198 88-116 (312)
143 3tr0_A Guanylate kinase, GMP k 95.9 0.0054 1.9E-07 52.5 3.8 25 172-196 7-31 (205)
144 2wsm_A Hydrogenase expression/ 95.9 0.0064 2.2E-07 52.8 4.3 39 159-197 17-55 (221)
145 2b8t_A Thymidine kinase; deoxy 95.9 0.0048 1.7E-07 53.8 3.5 108 172-288 12-125 (223)
146 1g5t_A COB(I)alamin adenosyltr 95.9 0.013 4.3E-07 49.7 5.9 117 173-291 29-165 (196)
147 2yvu_A Probable adenylyl-sulfa 95.9 0.0062 2.1E-07 51.4 4.1 28 171-198 12-39 (186)
148 1gvn_B Zeta; postsegregational 95.9 0.0087 3E-07 54.5 5.3 26 171-196 32-57 (287)
149 2qor_A Guanylate kinase; phosp 95.9 0.0048 1.6E-07 53.1 3.4 26 171-196 11-36 (204)
150 3a00_A Guanylate kinase, GMP k 95.8 0.0045 1.5E-07 52.4 3.1 25 173-197 2-26 (186)
151 2c95_A Adenylate kinase 1; tra 95.8 0.0063 2.2E-07 51.7 4.0 27 171-197 8-34 (196)
152 1ex7_A Guanylate kinase; subst 95.8 0.005 1.7E-07 52.1 3.1 25 173-197 2-26 (186)
153 1xjc_A MOBB protein homolog; s 95.8 0.0071 2.4E-07 50.2 4.0 28 171-198 3-30 (169)
154 1uf9_A TT1252 protein; P-loop, 95.8 0.0061 2.1E-07 52.1 3.8 26 170-195 6-31 (203)
155 3asz_A Uridine kinase; cytidin 95.8 0.0058 2E-07 52.7 3.7 27 171-197 5-31 (211)
156 1knq_A Gluconate kinase; ALFA/ 95.8 0.007 2.4E-07 50.4 4.0 25 172-196 8-32 (175)
157 1tev_A UMP-CMP kinase; ploop, 95.8 0.0061 2.1E-07 51.6 3.7 25 172-196 3-27 (196)
158 2j41_A Guanylate kinase; GMP, 95.8 0.0065 2.2E-07 52.1 3.9 25 172-196 6-30 (207)
159 2ga8_A Hypothetical 39.9 kDa p 95.7 0.013 4.4E-07 54.6 5.9 42 157-198 5-50 (359)
160 2ze6_A Isopentenyl transferase 95.7 0.006 2E-07 54.5 3.6 25 173-197 2-26 (253)
161 1ukz_A Uridylate kinase; trans 95.7 0.0072 2.4E-07 51.8 4.0 26 171-196 14-39 (203)
162 1y63_A LMAJ004144AAA protein; 95.7 0.0072 2.5E-07 51.0 3.9 25 171-195 9-33 (184)
163 1via_A Shikimate kinase; struc 95.7 0.0056 1.9E-07 51.1 3.2 25 173-197 5-29 (175)
164 1zuh_A Shikimate kinase; alpha 95.7 0.0071 2.4E-07 50.1 3.7 27 171-197 6-32 (168)
165 1j8m_F SRP54, signal recogniti 95.7 0.041 1.4E-06 50.2 9.1 88 172-261 98-190 (297)
166 3hws_A ATP-dependent CLP prote 95.7 0.012 4E-07 55.6 5.6 45 153-197 17-76 (363)
167 3ney_A 55 kDa erythrocyte memb 95.7 0.0075 2.6E-07 51.4 3.8 27 171-197 18-44 (197)
168 2jaq_A Deoxyguanosine kinase; 95.7 0.007 2.4E-07 51.7 3.6 24 174-197 2-25 (205)
169 1lvg_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 52.4 3.0 24 173-196 5-28 (198)
170 3umf_A Adenylate kinase; rossm 95.6 0.0079 2.7E-07 52.2 3.9 28 170-197 27-54 (217)
171 4gp7_A Metallophosphoesterase; 95.6 0.0055 1.9E-07 51.1 2.8 22 172-193 9-30 (171)
172 2plr_A DTMP kinase, probable t 95.6 0.0079 2.7E-07 51.7 3.9 26 173-198 5-30 (213)
173 1ye8_A Protein THEP1, hypothet 95.6 0.0081 2.8E-07 50.5 3.8 24 174-197 2-25 (178)
174 2bdt_A BH3686; alpha-beta prot 95.6 0.007 2.4E-07 51.2 3.4 22 173-194 3-24 (189)
175 2iyv_A Shikimate kinase, SK; t 95.6 0.0062 2.1E-07 51.2 3.1 25 173-197 3-27 (184)
176 1cke_A CK, MSSA, protein (cyti 95.6 0.0075 2.6E-07 52.6 3.7 24 173-196 6-29 (227)
177 2bwj_A Adenylate kinase 5; pho 95.6 0.0077 2.6E-07 51.2 3.7 26 172-197 12-37 (199)
178 2cdn_A Adenylate kinase; phosp 95.6 0.0089 3E-07 51.1 4.1 27 171-197 19-45 (201)
179 2bbw_A Adenylate kinase 4, AK4 95.6 0.008 2.7E-07 53.3 3.9 27 171-197 26-52 (246)
180 1ls1_A Signal recognition part 95.6 0.048 1.6E-06 49.7 9.2 88 171-260 97-189 (295)
181 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.008 2.7E-07 53.9 3.8 26 172-197 4-29 (260)
182 3vr4_D V-type sodium ATPase su 95.5 0.02 6.9E-07 54.9 6.6 88 174-261 153-258 (465)
183 1uj2_A Uridine-cytidine kinase 95.5 0.0084 2.9E-07 53.4 3.9 28 170-197 20-47 (252)
184 2c61_A A-type ATP synthase non 95.5 0.015 5.1E-07 56.1 5.7 88 173-260 153-258 (469)
185 2vli_A Antibiotic resistance p 95.5 0.0054 1.9E-07 51.5 2.4 26 172-197 5-30 (183)
186 3cm0_A Adenylate kinase; ATP-b 95.5 0.0086 2.9E-07 50.4 3.7 24 173-196 5-28 (186)
187 2qt1_A Nicotinamide riboside k 95.5 0.0081 2.8E-07 51.6 3.6 25 172-196 21-45 (207)
188 2z0h_A DTMP kinase, thymidylat 95.5 0.025 8.7E-07 47.8 6.7 25 174-198 2-26 (197)
189 1nn5_A Similar to deoxythymidy 95.5 0.0099 3.4E-07 51.2 4.1 28 171-198 8-35 (215)
190 1e6c_A Shikimate kinase; phosp 95.5 0.0075 2.6E-07 50.0 3.2 25 173-197 3-27 (173)
191 2ffh_A Protein (FFH); SRP54, s 95.5 0.056 1.9E-06 51.8 9.6 29 171-199 97-125 (425)
192 3tlx_A Adenylate kinase 2; str 95.5 0.018 6.2E-07 50.9 5.9 27 170-196 27-53 (243)
193 1qf9_A UMP/CMP kinase, protein 95.5 0.01 3.5E-07 50.1 4.1 26 172-197 6-31 (194)
194 2wwf_A Thymidilate kinase, put 95.5 0.0098 3.4E-07 51.2 4.0 32 172-204 10-41 (212)
195 2if2_A Dephospho-COA kinase; a 95.5 0.0082 2.8E-07 51.4 3.4 22 173-194 2-23 (204)
196 1aky_A Adenylate kinase; ATP:A 95.4 0.0098 3.4E-07 51.7 3.9 26 172-197 4-29 (220)
197 1zak_A Adenylate kinase; ATP:A 95.4 0.0094 3.2E-07 51.9 3.6 27 171-197 4-30 (222)
198 1um8_A ATP-dependent CLP prote 95.4 0.017 5.8E-07 54.7 5.6 26 172-197 72-97 (376)
199 1zd8_A GTP:AMP phosphotransfer 95.4 0.0096 3.3E-07 52.1 3.6 25 172-196 7-31 (227)
200 3l0o_A Transcription terminati 95.4 0.0068 2.3E-07 56.8 2.7 51 162-213 164-216 (427)
201 1rj9_A FTSY, signal recognitio 95.4 0.012 4.2E-07 53.9 4.4 28 171-198 101-128 (304)
202 2p5t_B PEZT; postsegregational 95.4 0.014 4.7E-07 52.1 4.6 27 171-197 31-57 (253)
203 4a1f_A DNAB helicase, replicat 95.3 0.071 2.4E-06 49.4 9.5 61 159-225 35-95 (338)
204 2jeo_A Uridine-cytidine kinase 95.3 0.011 3.8E-07 52.4 3.8 26 171-196 24-49 (245)
205 1jjv_A Dephospho-COA kinase; P 95.3 0.0093 3.2E-07 51.2 3.2 22 173-194 3-24 (206)
206 1z6g_A Guanylate kinase; struc 95.3 0.0095 3.3E-07 51.8 3.3 25 172-196 23-47 (218)
207 2pt5_A Shikimate kinase, SK; a 95.3 0.011 3.9E-07 48.7 3.6 24 174-197 2-25 (168)
208 3gqb_B V-type ATP synthase bet 95.3 0.021 7E-07 54.8 5.7 89 173-261 148-261 (464)
209 1znw_A Guanylate kinase, GMP k 95.3 0.011 3.7E-07 50.9 3.6 25 172-196 20-44 (207)
210 2pbr_A DTMP kinase, thymidylat 95.3 0.011 3.8E-07 49.9 3.6 24 174-197 2-25 (195)
211 3fwy_A Light-independent proto 95.3 0.013 4.4E-07 54.0 4.2 40 170-211 46-85 (314)
212 4e22_A Cytidylate kinase; P-lo 95.2 0.013 4.5E-07 52.2 4.0 27 171-197 26-52 (252)
213 1s96_A Guanylate kinase, GMP k 95.2 0.012 4.2E-07 51.1 3.7 26 172-197 16-41 (219)
214 1gtv_A TMK, thymidylate kinase 95.2 0.0068 2.3E-07 52.3 2.0 25 174-198 2-26 (214)
215 2v54_A DTMP kinase, thymidylat 95.2 0.013 4.4E-07 50.0 3.7 25 172-196 4-28 (204)
216 3fb4_A Adenylate kinase; psych 95.2 0.013 4.3E-07 50.7 3.6 24 174-197 2-25 (216)
217 1htw_A HI0065; nucleotide-bind 95.1 0.013 4.5E-07 48.1 3.4 26 171-196 32-57 (158)
218 1m7g_A Adenylylsulfate kinase; 95.1 0.015 5.3E-07 50.1 4.0 28 170-197 23-50 (211)
219 2zts_A Putative uncharacterize 95.1 0.039 1.3E-06 48.6 6.8 48 173-223 31-78 (251)
220 2grj_A Dephospho-COA kinase; T 95.1 0.014 4.7E-07 49.6 3.6 25 171-195 11-35 (192)
221 2q6t_A DNAB replication FORK h 95.1 0.15 5E-06 49.4 11.2 50 173-225 201-250 (444)
222 2r6a_A DNAB helicase, replicat 95.0 0.11 3.9E-06 50.4 10.3 61 159-224 192-252 (454)
223 1vht_A Dephospho-COA kinase; s 95.0 0.016 5.4E-07 50.3 3.8 23 172-194 4-26 (218)
224 2f1r_A Molybdopterin-guanine d 95.0 0.013 4.6E-07 48.7 3.2 27 173-199 3-29 (171)
225 3dl0_A Adenylate kinase; phosp 95.0 0.014 4.9E-07 50.4 3.5 23 174-196 2-24 (216)
226 1np6_A Molybdopterin-guanine d 95.0 0.03 1E-06 46.7 5.2 27 172-198 6-32 (174)
227 2pez_A Bifunctional 3'-phospho 95.0 0.016 5.6E-07 48.4 3.7 27 172-198 5-31 (179)
228 3hjn_A DTMP kinase, thymidylat 94.9 0.1 3.6E-06 44.3 8.7 51 174-226 2-52 (197)
229 3lv8_A DTMP kinase, thymidylat 94.9 0.051 1.8E-06 47.7 6.9 52 172-224 27-78 (236)
230 3r20_A Cytidylate kinase; stru 94.9 0.017 5.9E-07 50.6 3.7 26 172-197 9-34 (233)
231 3bgw_A DNAB-like replicative h 94.9 0.13 4.3E-06 49.8 10.2 60 159-224 186-245 (444)
232 3k1j_A LON protease, ATP-depen 94.9 0.017 5.9E-07 58.4 4.2 47 149-197 39-85 (604)
233 2i3b_A HCR-ntpase, human cance 94.9 0.015 5.3E-07 49.2 3.3 24 174-197 3-26 (189)
234 2f6r_A COA synthase, bifunctio 94.9 0.017 5.7E-07 52.4 3.7 24 171-194 74-97 (281)
235 3b9q_A Chloroplast SRP recepto 94.8 0.02 6.9E-07 52.4 4.2 28 171-198 99-126 (302)
236 3exa_A TRNA delta(2)-isopenten 94.8 0.017 5.9E-07 52.7 3.6 25 172-196 3-27 (322)
237 4eaq_A DTMP kinase, thymidylat 94.8 0.038 1.3E-06 48.3 5.8 28 171-198 25-52 (229)
238 3ake_A Cytidylate kinase; CMP 94.8 0.018 6.2E-07 49.2 3.7 25 173-197 3-27 (208)
239 3p32_A Probable GTPase RV1496/ 94.8 0.041 1.4E-06 51.7 6.3 39 160-198 65-105 (355)
240 2onk_A Molybdate/tungstate ABC 94.8 0.017 5.9E-07 50.9 3.5 24 173-196 25-48 (240)
241 3upu_A ATP-dependent DNA helic 94.8 0.054 1.8E-06 52.8 7.3 43 156-199 30-72 (459)
242 1tue_A Replication protein E1; 94.8 0.028 9.5E-07 48.0 4.6 25 173-197 59-83 (212)
243 3foz_A TRNA delta(2)-isopenten 94.8 0.021 7.1E-07 52.1 4.0 26 171-196 9-34 (316)
244 3ld9_A DTMP kinase, thymidylat 94.8 0.052 1.8E-06 47.2 6.4 56 169-225 18-74 (223)
245 3be4_A Adenylate kinase; malar 94.7 0.017 5.9E-07 50.0 3.4 25 173-197 6-30 (217)
246 3tif_A Uncharacterized ABC tra 94.7 0.015 5.2E-07 51.1 3.0 25 172-196 31-55 (235)
247 1sq5_A Pantothenate kinase; P- 94.7 0.02 6.7E-07 52.7 3.8 28 170-197 78-105 (308)
248 3cmw_A Protein RECA, recombina 94.7 0.084 2.9E-06 59.0 9.3 85 172-263 732-822 (1706)
249 3a8t_A Adenylate isopentenyltr 94.7 0.018 6.2E-07 53.2 3.5 27 171-197 39-65 (339)
250 3d3q_A TRNA delta(2)-isopenten 94.7 0.019 6.5E-07 53.2 3.6 25 173-197 8-32 (340)
251 1g41_A Heat shock protein HSLU 94.7 0.025 8.4E-07 54.5 4.5 47 152-198 16-76 (444)
252 4tmk_A Protein (thymidylate ki 94.7 0.071 2.4E-06 46.0 7.0 52 173-225 4-55 (213)
253 3lnc_A Guanylate kinase, GMP k 94.7 0.013 4.3E-07 51.4 2.3 25 172-196 27-52 (231)
254 1ak2_A Adenylate kinase isoenz 94.7 0.023 8E-07 49.8 4.0 26 172-197 16-41 (233)
255 4akg_A Glutathione S-transfera 94.7 0.11 3.7E-06 60.8 10.4 138 173-320 1268-1431(2695)
256 2qe7_A ATP synthase subunit al 94.6 0.052 1.8E-06 52.7 6.6 85 173-261 163-264 (502)
257 2pcj_A ABC transporter, lipopr 94.6 0.016 5.6E-07 50.5 2.9 24 173-196 31-54 (224)
258 1a7j_A Phosphoribulokinase; tr 94.6 0.012 4E-07 53.7 2.0 27 171-197 4-30 (290)
259 2r9v_A ATP synthase subunit al 94.6 0.053 1.8E-06 52.7 6.6 85 173-261 176-277 (515)
260 3nwj_A ATSK2; P loop, shikimat 94.6 0.019 6.5E-07 51.0 3.2 25 173-197 49-73 (250)
261 1e4v_A Adenylate kinase; trans 94.6 0.022 7.6E-07 49.2 3.6 23 174-196 2-24 (214)
262 3sr0_A Adenylate kinase; phosp 94.6 0.023 7.8E-07 48.9 3.6 24 174-197 2-25 (206)
263 2xb4_A Adenylate kinase; ATP-b 94.6 0.022 7.6E-07 49.6 3.6 23 174-196 2-24 (223)
264 1cr0_A DNA primase/helicase; R 94.5 0.077 2.6E-06 48.3 7.4 37 173-210 36-72 (296)
265 3crm_A TRNA delta(2)-isopenten 94.5 0.022 7.5E-07 52.4 3.5 25 173-197 6-30 (323)
266 2og2_A Putative signal recogni 94.5 0.028 9.4E-07 52.7 4.2 28 171-198 156-183 (359)
267 3b85_A Phosphate starvation-in 94.4 0.016 5.6E-07 49.9 2.4 23 173-195 23-45 (208)
268 2cbz_A Multidrug resistance-as 94.4 0.023 7.9E-07 50.0 3.4 26 172-197 31-56 (237)
269 3zvl_A Bifunctional polynucleo 94.4 0.024 8.1E-07 54.5 3.6 28 169-196 255-282 (416)
270 1b0u_A Histidine permease; ABC 94.4 0.02 6.9E-07 51.2 3.0 25 172-196 32-56 (262)
271 3gfo_A Cobalt import ATP-bindi 94.4 0.02 7E-07 51.6 3.0 25 172-196 34-58 (275)
272 2ck3_A ATP synthase subunit al 94.4 0.073 2.5E-06 51.8 6.9 89 173-261 163-272 (510)
273 3cmw_A Protein RECA, recombina 94.3 0.12 4.1E-06 57.8 9.4 83 172-261 1431-1519(1706)
274 1ypw_A Transitional endoplasmi 94.3 0.01 3.5E-07 62.1 1.0 152 150-321 476-662 (806)
275 3cmu_A Protein RECA, recombina 94.3 0.11 3.8E-06 58.9 9.2 84 172-262 383-472 (2050)
276 4gzl_A RAS-related C3 botulinu 94.3 0.025 8.5E-07 48.3 3.3 28 169-196 27-54 (204)
277 1ji0_A ABC transporter; ATP bi 94.3 0.022 7.6E-07 50.3 3.0 24 173-196 33-56 (240)
278 3end_A Light-independent proto 94.3 0.062 2.1E-06 49.2 6.2 42 169-212 38-79 (307)
279 2d2e_A SUFC protein; ABC-ATPas 94.3 0.025 8.4E-07 50.3 3.3 23 173-195 30-52 (250)
280 1ltq_A Polynucleotide kinase; 94.3 0.026 8.7E-07 51.6 3.5 23 173-195 3-25 (301)
281 1g6h_A High-affinity branched- 94.3 0.022 7.6E-07 50.8 3.0 24 173-196 34-57 (257)
282 2eyu_A Twitching motility prot 94.3 0.041 1.4E-06 49.2 4.7 109 171-291 24-135 (261)
283 1sgw_A Putative ABC transporte 94.2 0.02 6.8E-07 49.6 2.5 24 173-196 36-59 (214)
284 3gmt_A Adenylate kinase; ssgci 94.2 0.16 5.4E-06 44.3 8.2 25 173-197 9-33 (230)
285 4edh_A DTMP kinase, thymidylat 94.2 0.098 3.3E-06 45.1 6.9 32 172-204 6-37 (213)
286 4g1u_C Hemin import ATP-bindin 94.2 0.023 7.9E-07 51.0 3.0 25 172-196 37-61 (266)
287 2pze_A Cystic fibrosis transme 94.2 0.024 8.1E-07 49.7 3.0 26 172-197 34-59 (229)
288 2ff7_A Alpha-hemolysin translo 94.2 0.024 8.2E-07 50.3 3.0 24 173-196 36-59 (247)
289 2zu0_C Probable ATP-dependent 94.2 0.026 9E-07 50.6 3.3 24 172-195 46-69 (267)
290 1zu4_A FTSY; GTPase, signal re 94.2 0.037 1.3E-06 51.1 4.3 28 171-198 104-131 (320)
291 1oix_A RAS-related protein RAB 94.2 0.029 1E-06 47.4 3.4 24 173-196 30-53 (191)
292 2olj_A Amino acid ABC transpor 94.2 0.027 9.4E-07 50.4 3.3 25 172-196 50-74 (263)
293 1mv5_A LMRA, multidrug resista 94.2 0.024 8.3E-07 50.1 3.0 25 172-196 28-52 (243)
294 1vpl_A ABC transporter, ATP-bi 94.1 0.026 8.7E-07 50.4 3.0 25 172-196 41-65 (256)
295 2v9p_A Replication protein E1; 94.0 0.034 1.2E-06 50.8 3.8 26 171-196 125-150 (305)
296 2ghi_A Transport protein; mult 94.0 0.031 1E-06 50.0 3.4 24 172-195 46-69 (260)
297 1yrb_A ATP(GTP)binding protein 94.0 0.052 1.8E-06 48.3 4.9 27 171-197 13-39 (262)
298 2ixe_A Antigen peptide transpo 94.0 0.031 1.1E-06 50.3 3.4 25 172-196 45-69 (271)
299 2qi9_C Vitamin B12 import ATP- 94.0 0.028 9.5E-07 49.9 3.0 24 173-196 27-50 (249)
300 2yhs_A FTSY, cell division pro 94.0 0.04 1.4E-06 53.7 4.2 28 171-198 292-319 (503)
301 1q57_A DNA primase/helicase; d 93.9 0.2 6.9E-06 49.3 9.4 50 173-225 243-292 (503)
302 2ocp_A DGK, deoxyguanosine kin 93.9 0.038 1.3E-06 48.7 3.8 26 172-197 2-27 (241)
303 2yz2_A Putative ABC transporte 93.9 0.028 9.7E-07 50.4 3.0 25 172-196 33-57 (266)
304 2f9l_A RAB11B, member RAS onco 93.9 0.032 1.1E-06 47.4 3.2 23 173-195 6-28 (199)
305 2nq2_C Hypothetical ABC transp 93.9 0.029 9.8E-07 50.0 3.0 25 173-197 32-56 (253)
306 3io3_A DEHA2D07832P; chaperone 93.9 0.086 2.9E-06 49.2 6.3 29 169-197 15-43 (348)
307 2ihy_A ABC transporter, ATP-bi 93.9 0.029 9.8E-07 50.7 3.0 25 172-196 47-71 (279)
308 2zej_A Dardarin, leucine-rich 93.9 0.026 8.8E-07 47.3 2.5 22 174-195 4-25 (184)
309 1q3t_A Cytidylate kinase; nucl 93.8 0.044 1.5E-06 48.1 4.0 26 171-196 15-40 (236)
310 3sop_A Neuronal-specific septi 93.8 0.035 1.2E-06 49.9 3.4 23 174-196 4-26 (270)
311 3eph_A TRNA isopentenyltransfe 93.8 0.039 1.3E-06 52.2 3.8 25 173-197 3-27 (409)
312 2dyk_A GTP-binding protein; GT 93.8 0.041 1.4E-06 44.5 3.5 23 173-195 2-24 (161)
313 2wji_A Ferrous iron transport 93.8 0.038 1.3E-06 45.3 3.4 23 173-195 4-26 (165)
314 3iqw_A Tail-anchored protein t 93.8 0.093 3.2E-06 48.7 6.3 30 169-198 13-42 (334)
315 2qmh_A HPR kinase/phosphorylas 93.8 0.032 1.1E-06 47.3 2.8 25 172-196 34-58 (205)
316 2ged_A SR-beta, signal recogni 93.8 0.08 2.7E-06 44.4 5.4 26 171-196 47-72 (193)
317 1nlf_A Regulatory protein REPA 93.7 0.036 1.2E-06 50.1 3.3 26 172-197 30-55 (279)
318 2vp4_A Deoxynucleoside kinase; 93.7 0.029 1E-06 49.0 2.6 25 171-195 19-43 (230)
319 1svm_A Large T antigen; AAA+ f 93.6 0.043 1.5E-06 51.8 3.8 27 170-196 167-193 (377)
320 1nij_A Hypothetical protein YJ 93.6 0.034 1.2E-06 51.4 3.0 26 171-196 3-28 (318)
321 1zj6_A ADP-ribosylation factor 93.6 0.073 2.5E-06 44.5 4.9 33 162-195 7-39 (187)
322 3kta_A Chromosome segregation 93.6 0.046 1.6E-06 45.7 3.5 24 173-196 27-50 (182)
323 2fz4_A DNA repair protein RAD2 93.6 0.54 1.8E-05 41.1 10.6 38 156-196 95-132 (237)
324 1g8f_A Sulfate adenylyltransfe 93.6 0.081 2.8E-06 51.9 5.7 45 154-198 375-421 (511)
325 2ce2_X GTPase HRAS; signaling 93.5 0.043 1.5E-06 44.4 3.2 23 174-196 5-27 (166)
326 3mfy_A V-type ATP synthase alp 93.5 0.23 7.8E-06 48.7 8.6 47 173-223 228-275 (588)
327 2wjg_A FEOB, ferrous iron tran 93.5 0.044 1.5E-06 45.8 3.3 23 173-195 8-30 (188)
328 2lkc_A Translation initiation 93.5 0.05 1.7E-06 44.9 3.6 25 171-195 7-31 (178)
329 2pjz_A Hypothetical protein ST 93.5 0.038 1.3E-06 49.5 3.0 25 172-196 30-54 (263)
330 3fvq_A Fe(3+) IONS import ATP- 93.5 0.041 1.4E-06 51.5 3.3 25 172-196 30-54 (359)
331 1z2a_A RAS-related protein RAB 93.4 0.045 1.5E-06 44.6 3.2 23 173-195 6-28 (168)
332 1moz_A ARL1, ADP-ribosylation 93.4 0.054 1.8E-06 44.9 3.7 33 162-194 7-40 (183)
333 2orw_A Thymidine kinase; TMTK, 93.4 0.061 2.1E-06 45.3 4.0 109 173-289 4-113 (184)
334 3oaa_A ATP synthase subunit al 93.4 0.23 8E-06 48.1 8.4 85 173-261 163-264 (513)
335 1fzq_A ADP-ribosylation factor 93.3 0.066 2.3E-06 44.6 4.1 25 171-195 15-39 (181)
336 1nrj_B SR-beta, signal recogni 93.3 0.057 2E-06 46.4 3.8 26 171-196 11-36 (218)
337 2r8r_A Sensor protein; KDPD, P 93.3 0.079 2.7E-06 45.9 4.6 37 174-212 8-44 (228)
338 3jvv_A Twitching mobility prot 93.3 0.071 2.4E-06 50.0 4.6 111 171-292 122-234 (356)
339 3v9p_A DTMP kinase, thymidylat 93.3 0.12 4.2E-06 45.0 5.8 27 172-198 25-51 (227)
340 2v3c_C SRP54, signal recogniti 93.2 0.04 1.4E-06 53.1 2.8 28 171-198 98-125 (432)
341 1tq4_A IIGP1, interferon-induc 93.2 0.065 2.2E-06 51.2 4.3 24 171-194 68-91 (413)
342 2bbs_A Cystic fibrosis transme 93.2 0.05 1.7E-06 49.4 3.3 26 172-197 64-89 (290)
343 1tf7_A KAIC; homohexamer, hexa 93.2 0.17 5.7E-06 50.2 7.4 27 172-198 281-307 (525)
344 1cp2_A CP2, nitrogenase iron p 93.2 0.063 2.2E-06 48.0 4.0 37 173-211 2-38 (269)
345 1r8s_A ADP-ribosylation factor 93.2 0.056 1.9E-06 43.9 3.3 22 175-196 3-24 (164)
346 1z47_A CYSA, putative ABC-tran 93.2 0.05 1.7E-06 50.9 3.3 25 172-196 41-65 (355)
347 2www_A Methylmalonic aciduria 93.2 0.1 3.5E-06 48.8 5.5 27 171-197 73-99 (349)
348 2nzj_A GTP-binding protein REM 93.1 0.045 1.6E-06 45.0 2.8 23 173-195 5-27 (175)
349 3nh6_A ATP-binding cassette SU 93.1 0.039 1.3E-06 50.5 2.5 26 171-196 79-104 (306)
350 3tui_C Methionine import ATP-b 93.1 0.051 1.7E-06 50.9 3.3 25 172-196 54-78 (366)
351 3con_A GTPase NRAS; structural 93.1 0.054 1.8E-06 45.4 3.2 24 173-196 22-45 (190)
352 1u8z_A RAS-related protein RAL 93.1 0.055 1.9E-06 43.9 3.2 24 173-196 5-28 (168)
353 2h92_A Cytidylate kinase; ross 93.1 0.054 1.9E-06 46.7 3.3 24 173-196 4-27 (219)
354 1svi_A GTP-binding protein YSX 93.1 0.062 2.1E-06 45.1 3.6 25 171-195 22-46 (195)
355 3vr4_A V-type sodium ATPase ca 93.0 0.22 7.4E-06 49.1 7.7 48 172-223 232-280 (600)
356 1kao_A RAP2A; GTP-binding prot 93.0 0.057 1.9E-06 43.8 3.2 23 174-196 5-27 (167)
357 1c1y_A RAS-related protein RAP 93.0 0.057 1.9E-06 43.9 3.2 22 174-195 5-26 (167)
358 3rlf_A Maltose/maltodextrin im 93.0 0.053 1.8E-06 51.1 3.3 25 172-196 29-53 (381)
359 1ek0_A Protein (GTP-binding pr 93.0 0.053 1.8E-06 44.2 3.0 23 174-196 5-27 (170)
360 2gj8_A MNME, tRNA modification 93.0 0.053 1.8E-06 44.8 3.0 23 173-195 5-27 (172)
361 1p5z_B DCK, deoxycytidine kina 93.0 0.035 1.2E-06 49.6 2.0 26 171-196 23-48 (263)
362 2yyz_A Sugar ABC transporter, 93.0 0.054 1.9E-06 50.7 3.3 25 172-196 29-53 (359)
363 1u0j_A DNA replication protein 93.0 0.11 3.9E-06 46.2 5.2 37 160-196 90-128 (267)
364 1z08_A RAS-related protein RAB 93.0 0.059 2E-06 44.0 3.2 23 173-195 7-29 (170)
365 2erx_A GTP-binding protein DI- 93.0 0.054 1.9E-06 44.2 3.0 23 173-195 4-26 (172)
366 1z0j_A RAB-22, RAS-related pro 92.9 0.054 1.9E-06 44.2 2.9 23 174-196 8-30 (170)
367 2it1_A 362AA long hypothetical 92.9 0.055 1.9E-06 50.7 3.3 25 172-196 29-53 (362)
368 3kjh_A CO dehydrogenase/acetyl 92.9 0.11 3.8E-06 45.6 5.2 39 175-215 3-41 (254)
369 1m7b_A RND3/RHOE small GTP-bin 92.9 0.059 2E-06 44.9 3.2 23 173-195 8-30 (184)
370 3f9v_A Minichromosome maintena 92.9 0.036 1.2E-06 55.9 2.0 44 153-196 297-351 (595)
371 3ihw_A Centg3; RAS, centaurin, 92.9 0.061 2.1E-06 45.0 3.2 23 173-195 21-43 (184)
372 1ky3_A GTP-binding protein YPT 92.9 0.056 1.9E-06 44.7 2.9 25 172-196 8-32 (182)
373 3q72_A GTP-binding protein RAD 92.9 0.056 1.9E-06 44.0 2.9 21 174-194 4-24 (166)
374 1fx0_A ATP synthase alpha chai 92.9 0.053 1.8E-06 52.7 3.1 85 173-261 164-265 (507)
375 1g29_1 MALK, maltose transport 92.8 0.058 2E-06 50.8 3.3 24 173-196 30-53 (372)
376 3q85_A GTP-binding protein REM 92.8 0.061 2.1E-06 43.9 3.1 21 174-194 4-24 (169)
377 2afh_E Nitrogenase iron protei 92.8 0.14 4.8E-06 46.3 5.8 38 172-211 2-39 (289)
378 1v43_A Sugar-binding transport 92.8 0.059 2E-06 50.7 3.3 25 172-196 37-61 (372)
379 2hxs_A RAB-26, RAS-related pro 92.8 0.064 2.2E-06 44.2 3.2 23 173-195 7-29 (178)
380 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.064 2.2E-06 44.2 3.2 23 173-195 8-30 (177)
381 1g16_A RAS-related protein SEC 92.8 0.065 2.2E-06 43.7 3.2 23 173-195 4-26 (170)
382 3pqc_A Probable GTP-binding pr 92.8 0.073 2.5E-06 44.6 3.6 25 172-196 23-47 (195)
383 3fdi_A Uncharacterized protein 92.7 0.077 2.6E-06 45.3 3.7 25 173-197 7-31 (201)
384 3cr8_A Sulfate adenylyltranfer 92.7 0.11 3.8E-06 51.6 5.2 28 171-198 368-395 (552)
385 2yv5_A YJEQ protein; hydrolase 92.7 0.1 3.5E-06 47.7 4.7 33 160-196 156-188 (302)
386 1r2q_A RAS-related protein RAB 92.7 0.069 2.4E-06 43.5 3.2 23 173-195 7-29 (170)
387 1f6b_A SAR1; gtpases, N-termin 92.7 0.094 3.2E-06 44.4 4.1 24 171-194 24-47 (198)
388 3d31_A Sulfate/molybdate ABC t 92.6 0.05 1.7E-06 50.8 2.5 25 172-196 26-50 (348)
389 2fn4_A P23, RAS-related protei 92.6 0.082 2.8E-06 43.6 3.7 24 172-195 9-32 (181)
390 2ewv_A Twitching motility prot 92.6 0.1 3.5E-06 49.2 4.7 110 170-291 134-246 (372)
391 3c5c_A RAS-like protein 12; GD 92.6 0.063 2.1E-06 45.0 2.9 24 173-196 22-45 (187)
392 1m2o_B GTP-binding protein SAR 92.6 0.069 2.3E-06 44.9 3.2 24 172-195 23-46 (190)
393 3tmk_A Thymidylate kinase; pho 92.6 0.21 7.3E-06 43.0 6.3 27 172-198 5-31 (216)
394 3t1o_A Gliding protein MGLA; G 92.5 0.068 2.3E-06 44.9 3.1 24 173-196 15-38 (198)
395 1z0f_A RAB14, member RAS oncog 92.5 0.073 2.5E-06 43.8 3.2 25 172-196 15-39 (179)
396 2cjw_A GTP-binding protein GEM 92.5 0.076 2.6E-06 44.8 3.3 22 173-194 7-28 (192)
397 1p9r_A General secretion pathw 92.5 0.11 3.8E-06 49.7 4.8 28 170-197 165-192 (418)
398 1lw7_A Transcriptional regulat 92.5 0.066 2.3E-06 50.4 3.2 26 173-198 171-196 (365)
399 2axn_A 6-phosphofructo-2-kinas 92.5 0.083 2.8E-06 52.3 4.0 27 171-197 34-60 (520)
400 2bme_A RAB4A, RAS-related prot 92.5 0.067 2.3E-06 44.5 3.0 24 173-196 11-34 (186)
401 2iwr_A Centaurin gamma 1; ANK 92.4 0.058 2E-06 44.6 2.5 22 174-195 9-30 (178)
402 2y8e_A RAB-protein 6, GH09086P 92.4 0.069 2.4E-06 43.9 3.0 23 173-195 15-37 (179)
403 4dsu_A GTPase KRAS, isoform 2B 92.4 0.075 2.6E-06 44.2 3.2 24 173-196 5-28 (189)
404 2cxx_A Probable GTP-binding pr 92.4 0.064 2.2E-06 44.8 2.7 22 174-195 3-24 (190)
405 3kkq_A RAS-related protein M-R 92.4 0.07 2.4E-06 44.3 3.0 23 173-195 19-41 (183)
406 2qm8_A GTPase/ATPase; G protei 92.4 0.083 2.8E-06 49.1 3.7 28 170-197 53-80 (337)
407 1upt_A ARL1, ADP-ribosylation 92.4 0.095 3.2E-06 42.8 3.7 23 173-195 8-30 (171)
408 3bc1_A RAS-related protein RAB 92.4 0.077 2.6E-06 44.3 3.2 24 173-196 12-35 (195)
409 1oxx_K GLCV, glucose, ABC tran 92.3 0.047 1.6E-06 51.1 1.9 25 172-196 31-55 (353)
410 3gd7_A Fusion complex of cysti 92.3 0.074 2.5E-06 50.4 3.3 24 172-195 47-70 (390)
411 3dz8_A RAS-related protein RAB 92.3 0.084 2.9E-06 44.3 3.3 24 173-196 24-47 (191)
412 2oil_A CATX-8, RAS-related pro 92.3 0.08 2.7E-06 44.4 3.2 24 173-196 26-49 (193)
413 4dzz_A Plasmid partitioning pr 92.2 0.18 6E-06 42.8 5.4 43 173-217 2-45 (206)
414 3cbq_A GTP-binding protein REM 92.2 0.061 2.1E-06 45.5 2.4 22 172-193 23-44 (195)
415 2gza_A Type IV secretion syste 92.2 0.065 2.2E-06 50.4 2.8 25 173-197 176-200 (361)
416 4b3f_X DNA-binding protein smu 92.2 0.26 8.8E-06 50.2 7.4 63 157-224 192-254 (646)
417 2a9k_A RAS-related protein RAL 92.2 0.076 2.6E-06 44.0 3.0 24 173-196 19-42 (187)
418 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.083 2.9E-06 43.8 3.2 22 174-195 7-28 (186)
419 4hlc_A DTMP kinase, thymidylat 92.2 0.27 9.1E-06 42.1 6.4 25 173-197 3-27 (205)
420 3bwd_D RAC-like GTP-binding pr 92.2 0.085 2.9E-06 43.6 3.2 24 172-195 8-31 (182)
421 2b6h_A ADP-ribosylation factor 92.2 0.076 2.6E-06 44.8 2.9 25 170-194 27-51 (192)
422 3t5g_A GTP-binding protein RHE 92.1 0.086 2.9E-06 43.6 3.2 24 172-195 6-29 (181)
423 3cwq_A Para family chromosome 92.1 0.24 8.3E-06 42.4 6.1 43 174-219 2-45 (209)
424 2bov_A RAla, RAS-related prote 92.1 0.078 2.7E-06 44.9 3.0 25 172-196 14-38 (206)
425 2qnr_A Septin-2, protein NEDD5 92.1 0.067 2.3E-06 48.9 2.7 21 174-194 20-40 (301)
426 2g6b_A RAS-related protein RAB 92.1 0.087 3E-06 43.5 3.2 24 173-196 11-34 (180)
427 2efe_B Small GTP-binding prote 92.1 0.087 3E-06 43.5 3.2 24 173-196 13-36 (181)
428 3tw8_B RAS-related protein RAB 92.1 0.078 2.7E-06 43.7 2.9 24 172-195 9-32 (181)
429 1ksh_A ARF-like protein 2; sma 92.1 0.085 2.9E-06 43.9 3.1 27 170-196 16-42 (186)
430 1pui_A ENGB, probable GTP-bind 92.1 0.054 1.8E-06 46.2 1.9 25 171-195 25-49 (210)
431 2ew1_A RAS-related protein RAB 92.1 0.087 3E-06 44.8 3.2 23 173-195 27-49 (201)
432 1gwn_A RHO-related GTP-binding 92.0 0.089 3E-06 44.9 3.2 25 172-196 28-52 (205)
433 2qu8_A Putative nucleolar GTP- 92.0 0.09 3.1E-06 45.6 3.3 25 171-195 28-52 (228)
434 3oes_A GTPase rhebl1; small GT 91.9 0.091 3.1E-06 44.5 3.2 25 172-196 24-48 (201)
435 2fh5_B SR-beta, signal recogni 91.9 0.099 3.4E-06 44.7 3.5 25 172-196 7-31 (214)
436 1vg8_A RAS-related protein RAB 91.9 0.091 3.1E-06 44.6 3.2 25 172-196 8-32 (207)
437 1zd9_A ADP-ribosylation factor 91.9 0.093 3.2E-06 43.9 3.2 24 173-196 23-46 (188)
438 2obl_A ESCN; ATPase, hydrolase 91.9 0.093 3.2E-06 49.0 3.4 26 172-197 71-96 (347)
439 2fg5_A RAB-22B, RAS-related pr 91.9 0.092 3.2E-06 44.1 3.2 24 173-196 24-47 (192)
440 4dkx_A RAS-related protein RAB 91.9 0.085 2.9E-06 45.6 3.0 22 174-195 15-36 (216)
441 1m8p_A Sulfate adenylyltransfe 91.9 0.14 4.8E-06 51.2 4.9 28 171-198 395-422 (573)
442 2atv_A RERG, RAS-like estrogen 91.9 0.11 3.8E-06 43.7 3.7 25 171-195 27-51 (196)
443 2gf9_A RAS-related protein RAB 91.9 0.088 3E-06 44.1 3.0 24 173-196 23-46 (189)
444 3clv_A RAB5 protein, putative; 91.9 0.094 3.2E-06 44.1 3.2 25 172-196 7-31 (208)
445 2a5j_A RAS-related protein RAB 91.8 0.097 3.3E-06 43.9 3.2 23 173-195 22-44 (191)
446 3fkq_A NTRC-like two-domain pr 91.8 0.22 7.5E-06 46.9 6.0 40 170-211 141-181 (373)
447 3reg_A RHO-like small GTPase; 91.8 0.097 3.3E-06 44.0 3.2 24 173-196 24-47 (194)
448 2e87_A Hypothetical protein PH 91.8 7.9 0.00027 35.8 18.0 26 171-196 166-191 (357)
449 3tqf_A HPR(Ser) kinase; transf 91.8 0.1 3.5E-06 43.1 3.1 23 173-195 17-39 (181)
450 3llu_A RAS-related GTP-binding 91.8 0.086 2.9E-06 44.5 2.8 24 172-195 20-43 (196)
451 1f2t_A RAD50 ABC-ATPase; DNA d 91.7 0.12 4.1E-06 41.7 3.5 24 172-195 23-46 (149)
452 3tkl_A RAS-related protein RAB 91.7 0.092 3.2E-06 44.0 3.0 24 173-196 17-40 (196)
453 2gf0_A GTP-binding protein DI- 91.7 0.099 3.4E-06 44.0 3.2 24 172-195 8-31 (199)
454 2p67_A LAO/AO transport system 91.7 0.17 5.7E-06 47.1 5.0 29 169-197 53-81 (341)
455 2woo_A ATPase GET3; tail-ancho 91.7 0.28 9.5E-06 45.4 6.4 30 169-198 16-45 (329)
456 1zbd_A Rabphilin-3A; G protein 91.7 0.093 3.2E-06 44.4 3.0 24 173-196 9-32 (203)
457 1u0l_A Probable GTPase ENGC; p 91.7 0.15 5.2E-06 46.5 4.6 34 161-197 161-194 (301)
458 1z06_A RAS-related protein RAB 91.7 0.1 3.5E-06 43.6 3.2 24 172-195 20-43 (189)
459 3ch4_B Pmkase, phosphomevalona 91.7 0.14 4.7E-06 43.6 3.9 93 171-273 10-124 (202)
460 1bif_A 6-phosphofructo-2-kinas 91.7 0.11 3.8E-06 50.7 3.8 27 171-197 38-64 (469)
461 2g3y_A GTP-binding protein GEM 91.6 0.099 3.4E-06 45.0 3.0 22 173-194 38-59 (211)
462 2o52_A RAS-related protein RAB 91.6 0.09 3.1E-06 44.6 2.8 24 172-195 25-48 (200)
463 2q3h_A RAS homolog gene family 91.6 0.091 3.1E-06 44.4 2.8 24 172-195 20-43 (201)
464 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.089 3E-06 51.1 3.0 26 172-197 138-163 (460)
465 2p5s_A RAS and EF-hand domain 91.6 0.11 3.6E-06 44.0 3.2 25 171-195 27-51 (199)
466 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.076 2.6E-06 49.2 2.4 105 173-290 172-276 (330)
467 1x3s_A RAS-related protein RAB 91.6 0.1 3.4E-06 43.7 3.0 24 173-196 16-39 (195)
468 2woj_A ATPase GET3; tail-ancho 91.6 0.34 1.2E-05 45.2 6.9 28 170-197 16-43 (354)
469 3zq6_A Putative arsenical pump 91.5 0.31 1.1E-05 44.9 6.6 27 172-198 14-40 (324)
470 2bcg_Y Protein YP2, GTP-bindin 91.5 0.11 3.7E-06 44.2 3.2 24 173-196 9-32 (206)
471 1ega_A Protein (GTP-binding pr 91.5 0.11 3.6E-06 47.6 3.2 24 172-195 8-31 (301)
472 1ihu_A Arsenical pump-driving 91.5 0.29 9.9E-06 49.2 6.7 40 170-211 6-45 (589)
473 2h17_A ADP-ribosylation factor 91.4 0.09 3.1E-06 43.6 2.5 23 173-195 22-44 (181)
474 2j1l_A RHO-related GTP-binding 91.3 0.1 3.4E-06 44.9 2.8 23 173-195 35-57 (214)
475 2fv8_A H6, RHO-related GTP-bin 91.3 0.12 4E-06 44.1 3.2 23 173-195 26-48 (207)
476 2rcn_A Probable GTPase ENGC; Y 91.3 0.11 3.9E-06 48.4 3.3 24 173-196 216-239 (358)
477 3ug7_A Arsenical pump-driving 91.3 0.31 1E-05 45.5 6.3 28 171-198 25-52 (349)
478 1x6v_B Bifunctional 3'-phospho 91.3 0.13 4.5E-06 51.7 3.9 27 171-197 51-77 (630)
479 3lxx_A GTPase IMAP family memb 91.3 0.12 4E-06 45.3 3.3 26 171-196 28-53 (239)
480 4bas_A ADP-ribosylation factor 91.3 0.12 4.1E-06 43.4 3.2 26 171-196 16-41 (199)
481 2atx_A Small GTP binding prote 91.2 0.12 4.1E-06 43.4 3.2 23 173-195 19-41 (194)
482 2il1_A RAB12; G-protein, GDP, 91.2 0.088 3E-06 44.3 2.3 24 173-196 27-50 (192)
483 2qag_B Septin-6, protein NEDD5 91.2 0.1 3.5E-06 50.0 2.8 22 174-195 44-65 (427)
484 3k53_A Ferrous iron transport 91.1 0.13 4.4E-06 46.1 3.4 23 173-195 4-26 (271)
485 3iev_A GTP-binding protein ERA 91.1 0.11 3.9E-06 47.5 3.1 25 171-195 9-33 (308)
486 2hup_A RAS-related protein RAB 91.1 0.12 4.3E-06 43.7 3.2 24 172-195 29-52 (201)
487 2j0v_A RAC-like GTP-binding pr 91.1 0.13 4.3E-06 44.0 3.2 23 173-195 10-32 (212)
488 2gks_A Bifunctional SAT/APS ki 91.1 0.27 9.3E-06 48.8 6.0 44 155-198 353-398 (546)
489 2gco_A H9, RHO-related GTP-bin 91.1 0.13 4.4E-06 43.6 3.2 24 173-196 26-49 (201)
490 3cph_A RAS-related protein SEC 91.1 0.13 4.4E-06 43.8 3.2 25 172-196 20-44 (213)
491 3hdt_A Putative kinase; struct 91.1 0.16 5.6E-06 44.0 3.9 26 172-197 14-39 (223)
492 1c9k_A COBU, adenosylcobinamid 91.0 0.12 4.1E-06 43.1 2.8 34 175-214 2-35 (180)
493 2fu5_C RAS-related protein RAB 91.0 0.072 2.4E-06 44.2 1.5 23 173-195 9-31 (183)
494 3q3j_B RHO-related GTP-binding 91.0 0.13 4.5E-06 44.1 3.2 24 173-196 28-51 (214)
495 2dpy_A FLII, flagellum-specifi 90.9 0.13 4.5E-06 49.5 3.4 28 171-198 156-183 (438)
496 3geh_A MNME, tRNA modification 90.9 1.7 5.9E-05 42.0 11.3 88 64-196 161-248 (462)
497 2h57_A ADP-ribosylation factor 90.8 0.087 3E-06 44.1 1.9 24 173-196 22-45 (190)
498 3euj_A Chromosome partition pr 90.8 0.14 4.8E-06 49.8 3.5 25 173-197 30-54 (483)
499 2xau_A PRE-mRNA-splicing facto 90.7 0.94 3.2E-05 47.0 9.8 23 173-195 110-132 (773)
500 4dhe_A Probable GTP-binding pr 90.6 0.097 3.3E-06 45.1 2.0 26 171-196 28-53 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-40 Score=337.58 Aligned_cols=253 Identities=13% Similarity=0.133 Sum_probs=198.6
Q ss_pred cchHHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHH--HhhhcCccceEEEEEecCCc--CHHHHHHHHHHH
Q 044858 154 ESRKSTLKGILDALSNR---NFNMIGVYGMGGIGKTTLVKEVGR--QAKENNLFEKVISSRVSQTP--QIKEIQREIAEK 226 (426)
Q Consensus 154 ~gR~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~il~~i~~~ 226 (426)
+||+.++++|.++|... ..++|+|+||||+||||||+++|+ +.....+|++++|+++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999743 578999999999999999999998 56677889999999999885 899999999999
Q ss_pred hCCCcc--------ccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhccCCc
Q 044858 227 LGLKID--------QESESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSCEMDC 298 (426)
Q Consensus 227 l~~~~~--------~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~~~~~ 298 (426)
++.... ..+.......+.+.+...|||||||||||+..++ .+. ..+||+||||||+..++......
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 986521 1112233556666665434999999999998754 211 12699999999999997532234
Q ss_pred eeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHHHHHHHHHhhccccCCC
Q 044858 299 QQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLKRNFLRSFS 378 (426)
Q Consensus 299 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~ 378 (426)
...|+|++|++++||+||.+.++....++++.+++++|+++|+|+||||+++|+.|+.++ |+.+ +.+.+......
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~~- 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESRG- 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHHC-
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhccc-
Confidence 568999999999999999999876544577888999999999999999999999998764 3333 33322211100
Q ss_pred CcchhhhhhhHHhhhcCCCCChhHHHHH-----------Hhhc---CCccChhhHhhhccC
Q 044858 379 GTQAVAAYSTIQLSYNQLGGEELRKTFL-----------LIGY---SYICNVKDLLYRGMG 425 (426)
Q Consensus 379 ~~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~s~---~~~i~~~~Li~~Wi~ 425 (426)
. ..+..++.+||++||++ +|.||+ |||+ ++.|+ +++|++
T Consensus 360 --~-~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a 412 (549)
T 2a5y_B 360 --L-VGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSC 412 (549)
T ss_dssp --S-STTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHH
T ss_pred --H-HHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeee
Confidence 1 56889999999999998 999999 9999 67887 778875
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-35 Score=323.81 Aligned_cols=268 Identities=21% Similarity=0.308 Sum_probs=208.1
Q ss_pred cCCcccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhh-cCcc-ceEEEEEecCCcC--HHHHH
Q 044858 147 TQDFMHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE-NNLF-EKVISSRVSQTPQ--IKEIQ 220 (426)
Q Consensus 147 ~~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~--~~~il 220 (426)
+.....|+||+.++++|.+.|. +++.++|+|+||||+||||||+++|++... ..+| +.++|+++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3455679999999999999985 456789999999999999999999988643 3334 5788999988543 44456
Q ss_pred HHHHHHhCCCcc-----ccCcHHHHHHHHHHHhc-CCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhc
Q 044858 221 REIAEKLGLKID-----QESESVRAWRLLEQLKK-ETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSC 294 (426)
Q Consensus 221 ~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~ 294 (426)
..++..+..... ..........+...+.. ++|+||||||+|+...|..+ .+||+||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 777777764322 12223334444444432 24999999999998777654 468999999999998743
Q ss_pred cCCceeeEEccC-CCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHHHHHHHHHhhcc
Q 044858 295 EMDCQQNFVVDV-LNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLKRNF 373 (426)
Q Consensus 295 ~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~l~~l~~~~ 373 (426)
.......+.+.+ |+++++++||...++.. .+.+.+.+++|+++|+|+||||..+|++|+.++ ..|+..++.+....
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 456667899996 99999999999988533 234456799999999999999999999999765 47999999887554
Q ss_pred ccCC---CCcchhhhhhhHHhhhcCCCCChhHHHHHHhhc---CCccChhhHhhhccC
Q 044858 374 LRSF---SGTQAVAAYSTIQLSYNQLGGEELRKTFLLIGY---SYICNVKDLLYRGMG 425 (426)
Q Consensus 374 ~~~~---~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~---~~~i~~~~Li~~Wi~ 425 (426)
.... ...+.+.+..+|.+||+.||++ +|.||+|||+ ++.|+++.|+.+|.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~ 406 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDL 406 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTC
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCC
Confidence 3221 1112367999999999999998 9999999998 789999999999963
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.8e-35 Score=305.42 Aligned_cols=241 Identities=19% Similarity=0.137 Sum_probs=189.2
Q ss_pred ccchHHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccce-EEEEEecCCcCHHHHHHHHHHHhCCC
Q 044858 153 FESRKSTLKGILDALSN-RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-VISSRVSQTPQIKEIQREIAEKLGLK 230 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~il~~i~~~l~~~ 230 (426)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+...+|+. ++|+++++.++...++..|+..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999875 45789999999999999999999998777778996 99999999999888888887754211
Q ss_pred ---cccc---------CcHHHHHHHHHHH--hcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhccC
Q 044858 231 ---IDQE---------SESVRAWRLLEQL--KKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSCEM 296 (426)
Q Consensus 231 ---~~~~---------~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~~~ 296 (426)
.... +.......+.+.+ ..++|+||||||+|+.+.|+.+. +||+||||||+..++.. .
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-c
Confidence 1000 1112233444444 14689999999999988887652 58999999999988631 1
Q ss_pred CceeeEEcc------CCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcC--CHHHHHHHHHH
Q 044858 297 DCQQNFVVD------VLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNK--SPYEWRNALRQ 368 (426)
Q Consensus 297 ~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~--~~~~w~~~l~~ 368 (426)
.....|.++ +|+++|||+||.+.++.. . .++..+| |+|+||||.++|+.|+.+ +..+|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 222356666 899999999999986432 1 2233333 999999999999999976 77788652
Q ss_pred HhhccccCCCCcchhhhhhhHHhhhcCCCCChh-HHHHHHhhc---CCccChhhHhhhccC
Q 044858 369 LKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEEL-RKTFLLIGY---SYICNVKDLLYRGMG 425 (426)
Q Consensus 369 l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~s~---~~~i~~~~Li~~Wi~ 425 (426)
. . ..+..+|.+||+.||++ . |+||+|||+ ++.|+.+.|+.+|++
T Consensus 351 -------~----~-~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~a 398 (1221)
T 1vt4_I 351 -------N----C-DKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFD 398 (1221)
T ss_dssp -------S----C-HHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCS
T ss_pred -------C----h-hHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcC
Confidence 1 2 78999999999999998 8 999999999 689999999999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=279.84 Aligned_cols=264 Identities=20% Similarity=0.290 Sum_probs=196.3
Q ss_pred CcccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhh-cCccc-eEEEEEecCCcCHHHHHHHH-
Q 044858 149 DFMHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE-NNLFE-KVISSRVSQTPQIKEIQREI- 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~-~~~wv~v~~~~~~~~il~~i- 223 (426)
....|+||+.+++.|.+.+. .++.++|+|+|+||+||||||.+++++... ..+|. .++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 45679999999999999987 346789999999999999999999987654 56784 7999999875 334444444
Q ss_pred --HHHhCCC-----ccccCcHHHHHHHHHHHhc-CCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhhhcc
Q 044858 224 --AEKLGLK-----IDQESESVRAWRLLEQLKK-ETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVLSCE 295 (426)
Q Consensus 224 --~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va~~~ 295 (426)
+..++.. ....+.......+...+.. .+++||||||+|+...+..+ .++++||||||+..++...
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 4455421 1112233344555555543 26899999999987655532 3589999999999876422
Q ss_pred CCceeeEE-ccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhcCCHHHHHHHHHHHhhccc
Q 044858 296 MDCQQNFV-VDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKNKSPYEWRNALRQLKRNFL 374 (426)
Q Consensus 296 ~~~~~~~~-l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~w~~~l~~l~~~~~ 374 (426)
.+....+. +++|+.+++++||...++.. .+...+.+.+|+++|+|+||||..+|+.|+... ..|...++.+.....
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF 350 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCC
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHH
Confidence 22222222 35899999999999998742 222345789999999999999999999998663 379999888875432
Q ss_pred cCCC---CcchhhhhhhHHhhhcCCCCChhHHHHHHhhc---CCccChhhHhhhcc
Q 044858 375 RSFS---GTQAVAAYSTIQLSYNQLGGEELRKTFLLIGY---SYICNVKDLLYRGM 424 (426)
Q Consensus 375 ~~~~---~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~---~~~i~~~~Li~~Wi 424 (426)
.... ......+..++..||+.||++ .|.||++||+ ++.|+.+.|..+|.
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~ 405 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWD 405 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHT
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhc
Confidence 2111 112268899999999999998 9999999999 68899999999986
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=5.1e-16 Score=147.79 Aligned_cols=196 Identities=13% Similarity=0.123 Sum_probs=129.1
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc------CHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP------QIKEIQRE 222 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~~~il~~ 222 (426)
.+..|+||+++++.|.+++.++ +++.|+|++|+|||||++++.+... .+|+++.... +...++..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence 4567999999999999988764 7899999999999999999987641 6677765432 56677777
Q ss_pred HHHHhCC-----------------Ccc--ccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------hhhhcCCCC
Q 044858 223 IAEKLGL-----------------KID--QESESVRAWRLLEQLKKETKILIILDDIWGSLD---------LEAIGIPLA 274 (426)
Q Consensus 223 i~~~l~~-----------------~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~l~ 274 (426)
+.+.+.. ..+ ..........+.+.....++++|||||++.... +..+....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~- 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY- 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-
Confidence 7666542 000 011122222333333222389999999976542 12221111
Q ss_pred CCCCCeEEEEeecchhh-hh--------c-cC-CceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 275 DDNGGCKVLLTARSQDV-LS--------C-EM-DCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 275 ~~~~~s~iivTtr~~~v-a~--------~-~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
...++.++|+|++.... .. . .. .....+++.||+.+|+.+++.+.+....... -.+.+..|++.|+|+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDGI 238 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTTC
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCC
Confidence 11247889999887542 11 0 11 1235899999999999999988653221111 145678999999999
Q ss_pred hHHHHHHHHHhh
Q 044858 344 PIAIVPIAKALK 355 (426)
Q Consensus 344 Plai~~~~~~l~ 355 (426)
|+++..++..+.
T Consensus 239 P~~l~~~~~~~~ 250 (350)
T 2qen_A 239 PGWLVVFGVEYL 250 (350)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=1.6e-15 Score=144.74 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=124.5
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-----cCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-----PQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~il~~i 223 (426)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++++.+.... ..+|+++... .+...++..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 45679999999999999 765 68999999999999999999987542 2578877642 3445555555
Q ss_pred HHHhC------------------CCccc---c-C----cHHHHHHHHHHHhc-C-CeEEEEEeCCCCcc-----Chhhhc
Q 044858 224 AEKLG------------------LKIDQ---E-S----ESVRAWRLLEQLKK-E-TKILIILDDIWGSL-----DLEAIG 270 (426)
Q Consensus 224 ~~~l~------------------~~~~~---~-~----~~~~~~~l~~~l~~-~-k~~LlVlDdv~~~~-----~~~~l~ 270 (426)
.+.+. .+.+. . . .......+.+.+.+ . ++++|||||++... ++..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 44331 00000 0 0 01123344444432 1 48999999997532 222221
Q ss_pred CCCCCCCCCeEEEEeecchhhhh---------c-cCCc-eeeEEccCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHH
Q 044858 271 IPLADDNGGCKVLLTARSQDVLS---------C-EMDC-QQNFVVDVLNDKEAWSLFKKMTGD-CIENGELKSVVTEVVK 338 (426)
Q Consensus 271 ~~l~~~~~~s~iivTtr~~~va~---------~-~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~ 338 (426)
..+.....+..+|+|++...... . ..+. ...+.+.+|+.+++.+++...+.. ....+.. ..|++
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~ 237 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYE 237 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHH
Confidence 11212224688999998764211 0 1112 368999999999999999886531 1112221 78999
Q ss_pred HcCCchHHHHHHHHHhh
Q 044858 339 ECAGLPIAIVPIAKALK 355 (426)
Q Consensus 339 ~c~GlPlai~~~~~~l~ 355 (426)
.|+|+|+++..++..+.
T Consensus 238 ~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHCSCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHc
Confidence 99999999999988765
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=5.3e-15 Score=144.13 Aligned_cols=246 Identities=17% Similarity=0.107 Sum_probs=152.6
Q ss_pred cccccchHHHHHHHHHHh-c----c--CCccEEEE--EcCCCCcHHHHHHHHHHHhhhc---Cccc-eEEEEEecCCcCH
Q 044858 150 FMHFESRKSTLKGILDAL-S----N--RNFNMIGV--YGMGGIGKTTLVKEVGRQAKEN---NLFE-KVISSRVSQTPQI 216 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~~ 216 (426)
+..|+||+.+++.+.+.+ . . .....+.| +|++|+|||||++.+++..... ..|. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999998888 4 2 34567777 9999999999999999876542 1123 3567777777889
Q ss_pred HHHHHHHHHHhCCCccc--cCcHHHHHHHHHHHh-cCCeEEEEEeCCCCccC--------hhhhcCCC---CCCC--CCe
Q 044858 217 KEIQREIAEKLGLKIDQ--ESESVRAWRLLEQLK-KETKILIILDDIWGSLD--------LEAIGIPL---ADDN--GGC 280 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~--------~~~l~~~l---~~~~--~~s 280 (426)
..++..++.+++...+. .+.......+.+.+. .+++++|||||++.... +..+...+ +... ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999999765432 122333445555553 35799999999976421 22221111 1112 345
Q ss_pred EEEEeecchhhhh--------ccCCceeeEEccCCCHHHHHHHHHHhhCCC-CCCCchHHHHHHHHHHcC------CchH
Q 044858 281 KVLLTARSQDVLS--------CEMDCQQNFVVDVLNDKEAWSLFKKMTGDC-IENGELKSVVTEVVKECA------GLPI 345 (426)
Q Consensus 281 ~iivTtr~~~va~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~------GlPl 345 (426)
.+|+||+...... ........+.+.+|+.++.+++|...+... .....-.+....|++.|+ |+|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 6888887554210 001111239999999999999998765310 011122457888999999 9997
Q ss_pred HHHHHHHHhh------cC---CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHHHhhc
Q 044858 346 AIVPIAKALK------NK---SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFLLIGY 410 (426)
Q Consensus 346 ai~~~~~~l~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~ 410 (426)
.+..+..... +. +...+..++..... ...+.-++..||++ .+.++..++.
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~l~aia~ 319 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------------ASIQTHELEALSIH-ELIILRLIAE 319 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------------CCSSSSSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------------cchHHHHHHcCCHH-HHHHHHHHHH
Confidence 7666554321 11 33444443332110 12344456778876 7777777764
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=2.2e-13 Score=131.37 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=139.2
Q ss_pred ccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC----c--cceEEEEEecCCc-CHHHH
Q 044858 151 MHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENN----L--FEKVISSRVSQTP-QIKEI 219 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~v~~~~-~~~~i 219 (426)
..|+||+++++.+..++. .+..+.+.|+|++|+|||+||+.+++...... . ....+|++.+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 578999999999887765 34467899999999999999999998764321 1 2356788877766 88889
Q ss_pred HHHHHHHh-CCCcc--ccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC---hhhhcCCCCCCCCCeEEEEeecchhhh-
Q 044858 220 QREIAEKL-GLKID--QESESVRAWRLLEQLKKETKILIILDDIWGSLD---LEAIGIPLADDNGGCKVLLTARSQDVL- 292 (426)
Q Consensus 220 l~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~s~iivTtr~~~va- 292 (426)
+..++.++ +.... ..+.......+.+.+... +.+|||||++.... .+.+...+.....+..+|+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 99998887 33222 122334456666666543 44999999975421 122011111111678899999875321
Q ss_pred ---hc-cCCceeeEEccCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHHHcC---CchHH-HHHHHHHh--h----cC
Q 044858 293 ---SC-EMDCQQNFVVDVLNDKEAWSLFKKMTGD-CIENGELKSVVTEVVKECA---GLPIA-IVPIAKAL--K----NK 357 (426)
Q Consensus 293 ---~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---GlPla-i~~~~~~l--~----~~ 357 (426)
.. .......+.+++++.++..++|...+.. .....--.+..+.|++.|+ |.|.. +..+-... . .-
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 10 0111238999999999999999987631 1011111345677888888 98874 33333322 1 12
Q ss_pred CHHHHHHHHHHH
Q 044858 358 SPYEWRNALRQL 369 (426)
Q Consensus 358 ~~~~w~~~l~~l 369 (426)
+.+.+..++...
T Consensus 259 ~~~~v~~~~~~~ 270 (384)
T 2qby_B 259 RKEHVDKAIVDY 270 (384)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777887777664
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=3.1e-13 Score=130.15 Aligned_cols=244 Identities=15% Similarity=0.119 Sum_probs=150.7
Q ss_pred cccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc-cceEEEEEecCCcCHHHHHHHHH
Q 044858 150 FMHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL-FEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
+..|+||+.+++.+.+++. ......+.|+|++|+|||||++.+++....... -...+|++.....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999887 345678999999999999999999987654311 12466777777677888888888
Q ss_pred HHhCCCcccc--CcHHHHHHHHHHHhc-CCeEEEEEeCCCCcc------ChhhhcCCCCC-CCCCeEEEEeecchhhhhc
Q 044858 225 EKLGLKIDQE--SESVRAWRLLEQLKK-ETKILIILDDIWGSL------DLEAIGIPLAD-DNGGCKVLLTARSQDVLSC 294 (426)
Q Consensus 225 ~~l~~~~~~~--~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~~~s~iivTtr~~~va~~ 294 (426)
.+++...+.. +.......+.+.+.. +++.+|||||++... .+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 8876543322 223334555555543 458999999997532 12222111111 2335677888876543210
Q ss_pred c------CCceeeEEccCCCHHHHHHHHHHhhCC-CCCCCchHHHHHHHHHHcC---CchHHHHHHHHHhh------c--
Q 044858 295 E------MDCQQNFVVDVLNDKEAWSLFKKMTGD-CIENGELKSVVTEVVKECA---GLPIAIVPIAKALK------N-- 356 (426)
Q Consensus 295 ~------~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---GlPlai~~~~~~l~------~-- 356 (426)
. .-....+.+++++.++..+++.+.+.. .....-..+..+.+++.++ |.|..+..+..... +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 0 011258999999999999999986531 1011222456777888887 99985444332221 1
Q ss_pred C-CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCChhHHHHHHhh
Q 044858 357 K-SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGEELRKTFLLIG 409 (426)
Q Consensus 357 ~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s 409 (426)
. +.+.+..++.... ...+.-++..||.+ .+..+..++
T Consensus 259 ~i~~~~v~~a~~~~~---------------~~~~~~~~~~l~~~-~~~il~ai~ 296 (386)
T 2qby_A 259 KVKEEYVYMAKEEIE---------------RDRVRDIILTLPFH-SKLVLMAVV 296 (386)
T ss_dssp SCCHHHHHHHHHHHH---------------HHHHHHHHHTSCHH-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh---------------hchHHHHHHcCCHH-HHHHHHHHH
Confidence 1 6666666665432 12344455666654 454444444
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.50 E-value=5.2e-13 Score=119.84 Aligned_cols=199 Identities=12% Similarity=0.151 Sum_probs=119.7
Q ss_pred CcccccchHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
....++||+.+++.+..++..+. .+.+.|+|++|+||||||+.+++.......+.. ........ ...+....
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~ 93 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGR 93 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTC
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccC
Confidence 45679999999999999887544 457899999999999999999987653211100 00000000 00010000
Q ss_pred CC-----CccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchhhh-hcc
Q 044858 228 GL-----KIDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQDVL-SCE 295 (426)
Q Consensus 228 ~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~va-~~~ 295 (426)
.. .............+.+.+. .+++.+|||||++.. ..+..+...+.....++.+|+||+..... ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 00 0000011122223333221 246799999999753 34444444333334578888888765422 111
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALK 355 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 355 (426)
......+++++++.++..+++...+...... --.+..+.|++.|+|+|..+..+...+.
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1234689999999999999999887422211 1245678899999999999888765543
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.48 E-value=9.2e-13 Score=116.56 Aligned_cols=191 Identities=11% Similarity=0.080 Sum_probs=119.9
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.....++||+..++.+..++.....+.+.|+|++|+|||+||+.+++.......-...+.+..+...+...+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567899999999999998876666699999999999999999998764322112233444444333333222221111
Q ss_pred CCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecchhhh-hccCCceeeEEc
Q 044858 228 GLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQDVL-SCEMDCQQNFVV 304 (426)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~va-~~~~~~~~~~~l 304 (426)
... ....+++.+|||||++... ..+.+...+.....++++|+||+..... .........+.+
T Consensus 94 ~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 94 RTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp TSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred ccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 100 0112568999999997652 2333333332334577888888765321 111122348999
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
.+++.++..+++.+.+...... --.+..+.|++.++|.|..+..+...+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999877421111 124567789999999999765554433
No 12
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.48 E-value=8.4e-14 Score=109.23 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHH
Q 044858 8 TAKVAEYLVAPIIRQFTYCCSYNTNLEKLKNELEKLKIARASVQYKVDDSRIKG-DGIQQPVEEWLITVDEAINEVETLI 86 (426)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~l~~~~yd~ed~l 86 (426)
++.+++++.+.+.+++ ..+.++++++++|+++|..|+++|.+++.+. ...++.++.|+.+||+++||+||+|
T Consensus 3 v~~ll~KL~~ll~~E~-------~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEF-------KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TCSHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666665554 4578899999999999999999999998763 2468999999999999999999999
Q ss_pred hhhhhhh
Q 044858 87 ADKEKSN 93 (426)
Q Consensus 87 d~~~~~~ 93 (426)
|+|.+..
T Consensus 76 D~f~~~~ 82 (115)
T 3qfl_A 76 DKFLVQV 82 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9986543
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=1.6e-12 Score=125.18 Aligned_cols=217 Identities=15% Similarity=0.124 Sum_probs=139.7
Q ss_pred cccccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhc----CccceEEEEEecCCcCHHHHHH
Q 044858 150 FMHFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQTPQIKEIQR 221 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~il~ 221 (426)
+..|+||+.+++.+..++. ....+.+.|+|++|+||||||+.+++..... +.-...+|++.....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3679999999999999884 3456789999999999999999999876432 1112466788888888999999
Q ss_pred HHHHHhCCCcccc--CcHHHHHHHHHHHh-cCCeEEEEEeCCCCccC---h-hhhc---CCCCCC--CCCeEEEEeecch
Q 044858 222 EIAEKLGLKIDQE--SESVRAWRLLEQLK-KETKILIILDDIWGSLD---L-EAIG---IPLADD--NGGCKVLLTARSQ 289 (426)
Q Consensus 222 ~i~~~l~~~~~~~--~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~---~-~~l~---~~l~~~--~~~s~iivTtr~~ 289 (426)
.++.+++...+.. +.......+.+.+. .+++++|+|||++.... . +.+. ...... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9999997654332 23334556666664 35689999999986432 1 2221 111111 3456778887765
Q ss_pred hhh----hc-cCC-ceeeEEccCCCHHHHHHHHHHhhCC----CCCCCchHHHHHHHHHHcC---CchHHHH-HHHHHhh
Q 044858 290 DVL----SC-EMD-CQQNFVVDVLNDKEAWSLFKKMTGD----CIENGELKSVVTEVVKECA---GLPIAIV-PIAKALK 355 (426)
Q Consensus 290 ~va----~~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~c~---GlPlai~-~~~~~l~ 355 (426)
... .. ... ....+.+++++.++..+++...+.. ...++ +..+.+++.++ |.|..+. .+.....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 321 00 011 1257999999999999999987631 12222 35667888887 9995433 3322221
Q ss_pred -----c--C-CHHHHHHHHHHH
Q 044858 356 -----N--K-SPYEWRNALRQL 369 (426)
Q Consensus 356 -----~--~-~~~~w~~~l~~l 369 (426)
+ . +.+.+..++...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHH
Confidence 1 1 677777776654
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=1.2e-11 Score=119.25 Aligned_cols=201 Identities=14% Similarity=0.144 Sum_probs=133.0
Q ss_pred ccccchHHHHHHHHHHhcc----CCcc--EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 151 MHFESRKSTLKGILDALSN----RNFN--MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 151 ~~~~gR~~~~~~l~~~l~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
..++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++....... ...++++.+...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5699999999999888863 3334 8999999999999999999988754311 2466777777778889999999
Q ss_pred HHhCCCcccc--CcHHHHHHHHHHHh-cCCeEEEEEeCCCCc--cChhhhcCCCCC-CC---CCeEEEEeecchhhhhcc
Q 044858 225 EKLGLKIDQE--SESVRAWRLLEQLK-KETKILIILDDIWGS--LDLEAIGIPLAD-DN---GGCKVLLTARSQDVLSCE 295 (426)
Q Consensus 225 ~~l~~~~~~~--~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~--~~~~~l~~~l~~-~~---~~s~iivTtr~~~va~~~ 295 (426)
..++...+.. +.......+...+. .+++.+|+|||++.. .....+...+.. .. .+..+|++|+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 9887654322 23333444444443 256899999999764 222333222211 11 367788888765332110
Q ss_pred C----C--ceeeEEccCCCHHHHHHHHHHhhCCC-CCCCchHHHHHHHHHHc---------CCchHHHHHHHH
Q 044858 296 M----D--CQQNFVVDVLNDKEAWSLFKKMTGDC-IENGELKSVVTEVVKEC---------AGLPIAIVPIAK 352 (426)
Q Consensus 296 ~----~--~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c---------~GlPlai~~~~~ 352 (426)
. . ....+.+.+++.++..+++...+... ....--.+..+.|++.+ +|.|..+..+..
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 0 0 11369999999999999998876420 01122245778899999 788766555443
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=2.1e-11 Score=114.39 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=116.8
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
.....++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++...........++++.+...+...+ ++++..+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 345678999999999999988776656999999999999999999987643211112344444433332222 2222211
Q ss_pred CCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchhhh-hccCCceeeEEc
Q 044858 228 GLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQDVL-SCEMDCQQNFVV 304 (426)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~va-~~~~~~~~~~~l 304 (426)
..... .+..+++.++||||++.. ..++.+...+.....++.+|+||....-. .........+++
T Consensus 97 ~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 97 AQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 10000 000345899999999764 22333333332233567888888664321 111223458999
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHHHH
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIA-IVPIAK 352 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~~~~ 352 (426)
.+++.++..+++...+...... --.+....|++.|+|.|.. +..+..
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999876421111 1135678899999999954 444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=1e-10 Score=109.89 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=115.7
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 228 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~ 228 (426)
.+..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.+..+....... ....+..
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 99 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKE-- 99 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHHHH--
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHHHH--
Confidence 4567899999999999988877666699999999999999999998754321111223333322111111 1111110
Q ss_pred CCccccCcHHHHHHHHHH--HhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchhhh-hccCCceeeEE
Q 044858 229 LKIDQESESVRAWRLLEQ--LKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQDVL-SCEMDCQQNFV 303 (426)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~va-~~~~~~~~~~~ 303 (426)
.... +..+++.++|+||++.. ...+.+...+.....++++|+||...... .........+.
T Consensus 100 --------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 100 --------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp --------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred --------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 0000 11246789999999754 23333433332234577888888765321 11112245889
Q ss_pred ccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 304 VDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 304 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
+.+++.++...++...+..... .--.+....|++.++|.|..+..+...+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999887643221 1124567889999999999765554433
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.09 E-value=1.6e-09 Score=101.22 Aligned_cols=186 Identities=10% Similarity=0.069 Sum_probs=114.6
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhC
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLG 228 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~ 228 (426)
....++|++..++.+..++..+..+.+.++|++|+|||++|+.+.+.......-...+.++.+.......+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 86 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR-------- 86 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS--------
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH--------
Confidence 456789999999999998887666569999999999999999999875321111112334433321111100
Q ss_pred CCccccCcHHHHHHHHHH--HhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchhh-hhccCCceeeEE
Q 044858 229 LKIDQESESVRAWRLLEQ--LKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQDV-LSCEMDCQQNFV 303 (426)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~v-a~~~~~~~~~~~ 303 (426)
......... +..+++.++|+||++.. ...+.+...+.....++++|+||....- ..........+.
T Consensus 87 ---------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 87 ---------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp ---------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred ---------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 011111100 11246789999999754 2234444444333457788888765432 111122345899
Q ss_pred ccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 044858 304 VDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAK 352 (426)
Q Consensus 304 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 352 (426)
+.+++.++..+++...+...... --.+....|++.++|.|..+.....
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999998877432211 1245677888999999986655443
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.07 E-value=4.1e-09 Score=97.59 Aligned_cols=170 Identities=9% Similarity=0.021 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC---cc--ceEEEEEecCCcCHHHHHHH
Q 044858 152 HFESRKSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LF--EKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f--~~~~wv~v~~~~~~~~il~~ 222 (426)
.+.+|++++++|...|. .+.++.+.|+|++|+|||++++.+.+...... .. -..++++.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999887775 56778899999999999999999999875421 11 13556676677788899999
Q ss_pred HHHHhCCCc-cccCcHHHHHHHHHHH--hcCCeEEEEEeCCCCccChhhhcCCC--C-CCCCCeEEEEeecchhh-----
Q 044858 223 IAEKLGLKI-DQESESVRAWRLLEQL--KKETKILIILDDIWGSLDLEAIGIPL--A-DDNGGCKVLLTARSQDV----- 291 (426)
Q Consensus 223 i~~~l~~~~-~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~l--~-~~~~~s~iivTtr~~~v----- 291 (426)
|++++.... ........+..++..+ ..+++++++||+++....-+.+...+ + .......||.++.....
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 999985432 1122234455555554 24578999999998654222221111 1 11112233434433211
Q ss_pred hhcc--CCceeeEEccCCCHHHHHHHHHHhhC
Q 044858 292 LSCE--MDCQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 292 a~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
.... .-....+.+.|++.+|-.+++.+++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 0000 11135799999999999999998874
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.01 E-value=3.3e-09 Score=101.50 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=113.0
Q ss_pred CcccccchHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHh
Q 044858 149 DFMHFESRKSTLKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKL 227 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l 227 (426)
....++||+..++.+...+..++ .+.+.|+|++|+||||+|+.+.+.......+.. ..+........+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence 45568999999999999887654 457889999999999999999887643211100 0000000011111000
Q ss_pred CCC-----ccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchhh-hhcc
Q 044858 228 GLK-----IDQESESVRAWRLLEQLK----KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQDV-LSCE 295 (426)
Q Consensus 228 ~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~v-a~~~ 295 (426)
... ............+.+.+. .+++.++|+||++.. ...+.+...+.....++.+|++|....- ....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000 000000111223333332 246789999999754 2333343333223346677777764432 1111
Q ss_pred CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 044858 296 MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAK 352 (426)
Q Consensus 296 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 352 (426)
......+++.+++.++..+++.+.+...... --.+....|++.++|.|..+..+..
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2234789999999999999998776321111 1135677899999999998876653
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.95 E-value=3.1e-09 Score=91.26 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=88.9
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcC-----ccceEEEEEecCCcCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENN-----LFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~f~~~~wv~v~~~~~~~~il~~i 223 (426)
....++||+++++.+.+.+.....+.+.|+|++|+|||+||+.+++...... .....+++..+. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 4567899999999999998876677889999999999999999998764311 012233443321 11
Q ss_pred HHHhCCCccccCcHHHHHHHHHHH-hcCCeEEEEEeCCCCcc---------C-hhhhcCCCCCCCCCeEEEEeecchhhh
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQL-KKETKILIILDDIWGSL---------D-LEAIGIPLADDNGGCKVLLTARSQDVL 292 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~~s~iivTtr~~~va 292 (426)
...............+.+.+ ..+++.+|+|||++... . ...+...+ . ..+..+|+||......
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~-~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 ----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-A-RGELHCVGATTLDEYR 164 (195)
T ss_dssp ----TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-H-TTSCCEEEEECHHHHH
T ss_pred ----ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-c-cCCeEEEEeCCHHHHH
Confidence 00000000111223333333 23568899999997541 1 11121111 1 2345577777655321
Q ss_pred ------hccCCceeeEEccCCCHHHHHHHH
Q 044858 293 ------SCEMDCQQNFVVDVLNDKEAWSLF 316 (426)
Q Consensus 293 ------~~~~~~~~~~~l~~L~~~e~~~Lf 316 (426)
.........+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111223446889999988877654
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.93 E-value=8.6e-09 Score=96.66 Aligned_cols=191 Identities=10% Similarity=0.066 Sum_probs=115.6
Q ss_pred CcccccchHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALS-----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
.+..|+|++..+..+...+. ......+.|+|++|+|||+||+.+++.... ..++++.+......++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHH---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHH---
Confidence 45678999988888877765 233467889999999999999999987642 12344433322222221
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhc--CCeEEEEEeCCCCcc--ChhhhcCCCC--------C----------CCCCeE
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKK--ETKILIILDDIWGSL--DLEAIGIPLA--------D----------DNGGCK 281 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~~s~ 281 (426)
..+.. .++.+|+|||+.... ....+...+. . ..++..
T Consensus 82 ---------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 ---------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11211 346788999997652 1111111000 0 012356
Q ss_pred EEEeecchhhh-hccCCc-eeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhc---
Q 044858 282 VLLTARSQDVL-SCEMDC-QQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKALKN--- 356 (426)
Q Consensus 282 iivTtr~~~va-~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~--- 356 (426)
+|.||...... ...... ...+.+.+++.++..+++.+.+...... --.+....|++.|+|.|..+..+...+..
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 77766654321 111122 2589999999999999998877432211 22456788999999999988777655431
Q ss_pred ------CCHHHHHHHHHHH
Q 044858 357 ------KSPYEWRNALRQL 369 (426)
Q Consensus 357 ------~~~~~w~~~l~~l 369 (426)
.+.+....++..+
T Consensus 220 ~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHh
Confidence 1555666655544
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=1.4e-08 Score=96.37 Aligned_cols=197 Identities=15% Similarity=0.192 Sum_probs=113.6
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc-eEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+.+.......+. ....+..+.......+ .+....
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 112 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKN 112 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHH
Confidence 34567899999999999998876555589999999999999999998754211121 2233443332333322 222211
Q ss_pred hC-CCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEeecchh-hhhccCCceeeE
Q 044858 227 LG-LKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTARSQD-VLSCEMDCQQNF 302 (426)
Q Consensus 227 l~-~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTtr~~~-va~~~~~~~~~~ 302 (426)
+. ......... .......+++-+|++|+++... ....+...+......+++|++|.... +..........+
T Consensus 113 ~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 113 FARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred Hhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11 000000000 0011112356799999986542 22333222222234567777775442 211111223578
Q ss_pred EccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 044858 303 VVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIA 351 (426)
Q Consensus 303 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 351 (426)
.+.+++.++....+...+...... --.+..+.|++.++|.|..+..+.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998876422211 124567889999999998755543
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.84 E-value=7.6e-08 Score=88.45 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=118.3
Q ss_pred cCCcccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC
Q 044858 147 TQDFMHFESRKSTLKGILDALSN-------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 213 (426)
Q Consensus 147 ~~~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 213 (426)
...+..++|.+..++.|.+.+.. .....+.|+|++|+|||+||+.+++..... .+.+..+.-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHH
Confidence 34567789999998888877642 345679999999999999999999876432 222332211
Q ss_pred cCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----hhhhcCCCC--C
Q 044858 214 PQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------D----LEAIGIPLA--D 275 (426)
Q Consensus 214 ~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~ 275 (426)
.+ ... .........++......++.+|+|||++... . +..+...+. .
T Consensus 88 ~~--------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 VK--------------KFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CC--------------CST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HH--------------hcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 10 000 0111233344455555667999999996431 0 111111110 1
Q ss_pred CCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHH
Q 044858 276 DNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAG-LPIAIVPI 350 (426)
Q Consensus 276 ~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~ 350 (426)
...+..||.||....... ........+.+.+.+.++..++|...+.......+ .....+++.+.| .|-.|..+
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 234567777776543221 11123458999999999999999988763322111 114567778877 45455544
Q ss_pred HHHh------hc---CCHHHHHHHHHHHhh
Q 044858 351 AKAL------KN---KSPYEWRNALRQLKR 371 (426)
Q Consensus 351 ~~~l------~~---~~~~~w~~~l~~l~~ 371 (426)
.... .. -+.+....++.....
T Consensus 231 ~~~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 231 CTEAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 3221 12 167777777776553
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.83 E-value=9.7e-08 Score=93.19 Aligned_cols=181 Identities=17% Similarity=0.246 Sum_probs=109.6
Q ss_pred CCcccccchHHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHH
Q 044858 148 QDFMHFESRKSTL---KGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREI 223 (426)
Q Consensus 148 ~~~~~~~gR~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i 223 (426)
.....++|.+..+ ..+...+..+..+.+.|+|++|+||||||+.+.+..... ++.++.. ....++ +.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-REA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HHH
Confidence 4567789999888 677777777777889999999999999999999876432 2222222 222222 222
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEE-eecchh--hhhccCCc
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLL-TARSQD--VLSCEMDC 298 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iiv-Ttr~~~--va~~~~~~ 298 (426)
+. ........+++.+|+||+++... ..+.+...+.. ....+|. ||.+.. +.......
T Consensus 95 ~~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 IE----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HH----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred HH----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCc
Confidence 11 11111223578999999997652 22223222221 2334444 444432 11112234
Q ss_pred eeeEEccCCCHHHHHHHHHHhhCCC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 299 QQNFVVDVLNDKEAWSLFKKMTGDC------IENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 299 ~~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
...+.+.+++.++...++.+.+... ....--.+..+.|++.++|.+-.+..+...+
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5688999999999999999887421 1111234577888999999988766554443
No 25
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.78 E-value=3.7e-07 Score=82.56 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=100.7
Q ss_pred CcccccchHHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 149 DFMHFESRKSTLKGILDAL---SN---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
.+..++|.+..++.+.+.+ .. ...+.+.|+|++|+|||++|+.+++..... .+.+..+.-.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~- 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVE- 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSS-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHh-
Confidence 4556778777666655443 21 234568899999999999999999876421 23333332111
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------------C----hhhhcCCCC--CCC
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-------------D----LEAIGIPLA--DDN 277 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~----~~~l~~~l~--~~~ 277 (426)
.... ........++.......+.+|+|||++... . +..+...+. ...
T Consensus 78 -------------~~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 78 -------------VIGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp -------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred -------------hccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0000 011223344444444568999999997541 1 111111111 112
Q ss_pred CCeEEEEeecchhhhh-ccC---CceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHH
Q 044858 278 GGCKVLLTARSQDVLS-CEM---DCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPIA 351 (426)
Q Consensus 278 ~~s~iivTtr~~~va~-~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~ 351 (426)
.+..||.||....... ... .....+.+.+.+.++-.+++...+...............+++.+.|.+- .|..+.
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 3556666765543211 011 2236788999999999999988774322222223335778888888754 554443
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.78 E-value=1.7e-08 Score=90.14 Aligned_cols=176 Identities=16% Similarity=0.119 Sum_probs=103.6
Q ss_pred Ccccccch---HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 149 DFMHFESR---KSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 149 ~~~~~~gR---~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
.+..|+++ +..++.+..+...+..+.+.|+|++|+||||||+.+++..... ...+.|+..+...+. +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence 44556653 3556666666555566789999999999999999999887643 234556665432110 00
Q ss_pred HhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC----hhhhcCCCC--CCCCCeEEEEeecchhhh-----hc
Q 044858 226 KLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD----LEAIGIPLA--DDNGGCKVLLTARSQDVL-----SC 294 (426)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~l~--~~~~~s~iivTtr~~~va-----~~ 294 (426)
...+.+ .++.+|||||++.... ...+...+. ......++|+||+...-. ..
T Consensus 97 ----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 97 ----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 001111 2467999999975422 122221110 011122578887754310 00
Q ss_pred cC---CceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 044858 295 EM---DCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAK 352 (426)
Q Consensus 295 ~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 352 (426)
.. .....+++.+++.++..+++...+..... .--.+....|++.++|.+-.+..+..
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 01 11268999999999999999987742111 11245677899999998877665543
No 27
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.77 E-value=2.9e-07 Score=84.00 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=96.2
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK 248 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 248 (426)
....+.+.|+|++|+|||+||+.+++.... . .+.+..+... .+. ...........++....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------------~g~--~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------------IGF--SETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC------------TTC--CHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh------------cCC--chHHHHHHHHHHHHHHH
Confidence 345678899999999999999999987432 1 1222222110 000 00001112233444444
Q ss_pred cCCeEEEEEeCCCCc-----------cC-hhhhcCCCC---CCCCCeEEEEeecchhhhhc--cCCc-eeeEEccCCCH-
Q 044858 249 KETKILIILDDIWGS-----------LD-LEAIGIPLA---DDNGGCKVLLTARSQDVLSC--EMDC-QQNFVVDVLND- 309 (426)
Q Consensus 249 ~~k~~LlVlDdv~~~-----------~~-~~~l~~~l~---~~~~~s~iivTtr~~~va~~--~~~~-~~~~~l~~L~~- 309 (426)
..++.+|+|||++.. .. .+.+...+. .......||.||........ ..+. ...+.+++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 456899999998542 00 111211111 12233456667766533211 1122 46789999988
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC------chHHHHHHHHHhhcCCHHHHHHHHHHHhhcc
Q 044858 310 KEAWSLFKKMTGDCIENGELKSVVTEVVKECAG------LPIAIVPIAKALKNKSPYEWRNALRQLKRNF 373 (426)
Q Consensus 310 ~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G------lPlai~~~~~~l~~~~~~~w~~~l~~l~~~~ 373 (426)
++...++.+... . ..+....|++.+.| ++-++..+-......+...+..++..+....
T Consensus 202 ~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 202 EQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 677776665321 1 13457788888888 3444433333333335567777777665443
No 28
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=6.8e-08 Score=91.71 Aligned_cols=199 Identities=9% Similarity=0.080 Sum_probs=108.3
Q ss_pred CcccccchHHHHHHHHHHh-ccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cc--------------------
Q 044858 149 DFMHFESRKSTLKGILDAL-SNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FE-------------------- 203 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~-------------------- 203 (426)
....++|++..++.+..++ ..++.+.+.|+|+.|+||||+++.+......... ++
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 4567889999999998888 6555445999999999999999999885321110 00
Q ss_pred eEEEEEecCCc-CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCe
Q 044858 204 KVISSRVSQTP-QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLADDNGGC 280 (426)
Q Consensus 204 ~~~wv~v~~~~-~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s 280 (426)
..+.+..+... ......++++..+.....-... . ....+ .+++-+++||++...+ ..+.+...+.....++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~--~ls~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D--SKDGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c--ccccc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 01111111100 0000122222222111000000 0 00001 1356799999998642 1222322221122467
Q ss_pred EEEEeecchh-hhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCch-HHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 281 KVLLTARSQD-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGEL-KSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 281 ~iivTtr~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~-~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
.+|++|.... +..........+++.+++.++..+++.+.+...... -- .+....|++.++|.+..+..+...+
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7888876643 211112234789999999999999998876421110 01 2456789999999988776655433
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.70 E-value=1.7e-06 Score=80.81 Aligned_cols=185 Identities=17% Similarity=0.183 Sum_probs=107.0
Q ss_pred CCcccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDALS------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
....++.|.+..++.|.+.+. ....+.+.++|++|+|||+||+.+++..... ..+.++.+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh
Confidence 456677888877777766542 1234678999999999999999999876211 122333332110
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------hhhhcCC---CCCCCCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-------------LEAIGIP---LADDNGG 279 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~~ 279 (426)
... .........++......++.+|+||+++.... ...+... +.....+
T Consensus 85 --------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 111 11223344555555556789999999975410 0111111 1112345
Q ss_pred eEEEEeecchhhh-h-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 044858 280 CKVLLTARSQDVL-S-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL-PIAIVPIAK 352 (426)
Q Consensus 280 s~iivTtr~~~va-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~~ 352 (426)
..||.||...... . ........+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566666544221 1 0112336788899999999999988875432211 134577899999987 444555544
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.68 E-value=7.5e-07 Score=84.59 Aligned_cols=184 Identities=11% Similarity=0.086 Sum_probs=106.2
Q ss_pred CCcccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDALS------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
.....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.-.+
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc
Confidence 345678899988888877663 234567899999999999999999887532 123444432111
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------------ChhhhcCCCC----CCCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-------------DLEAIGIPLA----DDNG 278 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~l~----~~~~ 278 (426)
... .........++......++.+|+||+++... ....+...+. ....
T Consensus 156 --------------~~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 --------------KWV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp --------------SST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred --------------ccc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 0011223334444444568999999995321 0112211111 1123
Q ss_pred CeEEEEeecchhhh-h-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHHHH
Q 044858 279 GCKVLLTARSQDVL-S-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAG-LPIAIVPIAK 352 (426)
Q Consensus 279 ~s~iivTtr~~~va-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~~~ 352 (426)
+..||.||...... . ........+.+...+.++..+++...+...... -.......|++.+.| .|-.|..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566666543221 1 111233578889999999999998776422111 113467789999998 5556666544
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.68 E-value=1.2e-07 Score=88.85 Aligned_cols=185 Identities=13% Similarity=0.055 Sum_probs=105.5
Q ss_pred CCcccccchHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.....++|++..+..+..++..+.. .++.+.|++|+|||++|+.+.+.... ..+.++.+. .... .++.++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~-~~~~-~i~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSD-CKID-FVRGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTT-CCHH-HHHTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccc-cCHH-HHHHHHHH
Confidence 4567789999999999998886553 57788888999999999999887632 234444433 2222 22222111
Q ss_pred hCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc---ChhhhcCCCCCCCCCeEEEEeecchhhh-hccCCceeeE
Q 044858 227 LGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL---DLEAIGIPLADDNGGCKVLLTARSQDVL-SCEMDCQQNF 302 (426)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~s~iivTtr~~~va-~~~~~~~~~~ 302 (426)
...... ..+++.+|+|||++... ..+.+...+.....++++|+||....-. .........+
T Consensus 96 ~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 96 FASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred HHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 100000 01368899999998653 2222322221112356788887664321 1111223579
Q ss_pred EccCCCHHHHHHHHHH-------hhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 044858 303 VVDVLNDKEAWSLFKK-------MTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL 354 (426)
Q Consensus 303 ~l~~L~~~e~~~Lf~~-------~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 354 (426)
++++++.++-.+++.. .+......-...+....|++.++|.+..+......+
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999998885443322 222111111112567789999999877554443333
No 32
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.66 E-value=9.6e-07 Score=82.59 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=109.3
Q ss_pred ccCCcccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC
Q 044858 146 STQDFMHFESRKSTLKGILDALS------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 213 (426)
Q Consensus 146 ~~~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 213 (426)
|......++|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++..... .+.++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~-- 85 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS-- 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH--
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH--
Confidence 33456778999998888887762 1124578999999999999999999875422 2223221
Q ss_pred cCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------hhhhcCC---CCCCC
Q 044858 214 PQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-------------LEAIGIP---LADDN 277 (426)
Q Consensus 214 ~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~ 277 (426)
++.. ... ......+..++......++.+|+||+++.... ...+... +....
T Consensus 86 ----~l~~--------~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 ----DLVS--------KWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ----HHHT--------TTG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ----HHhh--------ccc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1111 000 11123344555555556789999999974411 1112111 11233
Q ss_pred CCeEEEEeecchhhhh--ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHH
Q 044858 278 GGCKVLLTARSQDVLS--CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL-PIAIVPIA 351 (426)
Q Consensus 278 ~~s~iivTtr~~~va~--~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~ 351 (426)
.+..||.||....... ........+.+...+.++-.++|...+....... -......|++.+.|. +-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4566666776543211 0112235788889999999999998886433211 134567888999884 54554443
No 33
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.1e-07 Score=94.86 Aligned_cols=189 Identities=13% Similarity=0.116 Sum_probs=108.1
Q ss_pred CCcccccchHHHHHHHHHHhcc-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe
Q 044858 148 QDFMHFESRKSTLKGILDALSN-----------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV 210 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 210 (426)
.....++|++..++.+..++.. +..+.+.|+|++|+||||+|+.+++... + ..+.++.
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 3567799999999999998864 1346899999999999999999998763 2 2344555
Q ss_pred cCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHH-HhcCCeEEEEEeCCCCccC-----hhhhcCCCCCCCCCeEEEE
Q 044858 211 SQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQ-LKKETKILIILDDIWGSLD-----LEAIGIPLADDNGGCKVLL 284 (426)
Q Consensus 211 ~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~s~iiv 284 (426)
+...+.. ++...+............ ....... ...+++.+|+||+++.... +..+...+.. .+..||+
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVVGY---FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCSTTT---TTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHHHH---HhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 4444432 333322221111000000 0000000 1235689999999975421 1222221111 2334666
Q ss_pred eecchhh--hhccCCceeeEEccCCCHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCchH-HHHHH
Q 044858 285 TARSQDV--LSCEMDCQQNFVVDVLNDKEAWSLFKKMTG--DCIENGELKSVVTEVVKECAGLPI-AIVPI 350 (426)
Q Consensus 285 Ttr~~~v--a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 350 (426)
++..... ..........+.+.+++.++..+++...+. +...++ +....|++.++|.+- ++..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 6554321 111223346899999999999999887763 111222 346788999999554 45544
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.65 E-value=8.5e-07 Score=83.53 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=104.7
Q ss_pred CcccccchHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSN-----RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
.+..++|++..++.+..++.. .....+.|+|++|+|||+||+.+.+..... | +.++.+.......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~----- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN--I---KTTAAPMIEKSGD----- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC--E---EEEEGGGCCSHHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--e---EEecchhccchhH-----
Confidence 567799999998888887762 344578999999999999999998775422 2 2233322211111
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCC------------------CCCCCeEEE
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLA------------------DDNGGCKVL 283 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~------------------~~~~~s~ii 283 (426)
....+.. ..+..+|+||++.... ....+...+. ...++..+|
T Consensus 97 ----------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 97 ----------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ----------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ----------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111 1356788999987541 1111111110 011235666
Q ss_pred Eeecchhhh-h-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 044858 284 LTARSQDVL-S-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKA 353 (426)
Q Consensus 284 vTtr~~~va-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 353 (426)
.+|...... . ........+.+.+++.++...++.+.+..... .--.+....|++.+.|.|-.+..+...
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 666654321 1 11122368999999999999999887742211 122456788899999999766555443
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.63 E-value=4.6e-07 Score=86.40 Aligned_cols=214 Identities=9% Similarity=0.069 Sum_probs=112.5
Q ss_pred cccccchHHHHHH---HHHHhccCCc--cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe----cCCcCHHHHH
Q 044858 150 FMHFESRKSTLKG---ILDALSNRNF--NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV----SQTPQIKEIQ 220 (426)
Q Consensus 150 ~~~~~gR~~~~~~---l~~~l~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v----~~~~~~~~il 220 (426)
+..|+|++..++. +...+..+.. +.+.|+|++|+|||++|+.+.+.......| +.+.. +......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 6679999888665 4444444433 589999999999999999999887532222 12221 1223344444
Q ss_pred HHHHHHh-CCC----------------------------cc--ccCcHH---HHHHHHHH-HhcCC----eEEEEEeCCC
Q 044858 221 REIAEKL-GLK----------------------------ID--QESESV---RAWRLLEQ-LKKET----KILIILDDIW 261 (426)
Q Consensus 221 ~~i~~~l-~~~----------------------------~~--~~~~~~---~~~~l~~~-l~~~k----~~LlVlDdv~ 261 (426)
.+..... +.. .. ...... ........ ...++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4443321 000 00 000111 11111111 11233 4599999997
Q ss_pred Ccc--ChhhhcCCCCCCCCCeEEEEeecc-------------hhhhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCC
Q 044858 262 GSL--DLEAIGIPLADDNGGCKVLLTARS-------------QDVLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIEN 326 (426)
Q Consensus 262 ~~~--~~~~l~~~l~~~~~~s~iivTtr~-------------~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 326 (426)
... ....+...+.... ...++++|.. ..+..........+.+.+++.++..+++...+.....
T Consensus 200 ~l~~~~~~~L~~~le~~~-~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDM-APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GSBHHHHHHHHHHTTCTT-CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred ccChHHHHHHHHHhhCcC-CCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 542 2222322222222 2234444431 1111111223456899999999999999987742211
Q ss_pred CchHHHHHHHHHHcC-CchHHHHHHHHHh------hcC---CHHHHHHHHHH
Q 044858 327 GELKSVVTEVVKECA-GLPIAIVPIAKAL------KNK---SPYEWRNALRQ 368 (426)
Q Consensus 327 ~~~~~~~~~i~~~c~-GlPlai~~~~~~l------~~~---~~~~w~~~l~~ 368 (426)
.--.+....|++.+. |.|-.+..+.... .+. +.+..+.++..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 122456788999997 7777655443321 111 56666666654
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=4.9e-07 Score=85.28 Aligned_cols=185 Identities=11% Similarity=0.108 Sum_probs=106.0
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccc-eEEEEEecCCcCHHHHHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-KVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.....++|.+..++.+...+..++.+.+.++|+.|+||||+|+.+.+...... +. ....++.+.......+. +++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir-~~i~~ 99 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVR-NQIKD 99 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHH-THHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHH-HHHHH
Confidence 34566788888888888888877665589999999999999999998764321 21 12233333322222221 11111
Q ss_pred hCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecchh-hhhccCCceeeEE
Q 044858 227 LGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQD-VLSCEMDCQQNFV 303 (426)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~~-va~~~~~~~~~~~ 303 (426)
+..... ...+.+-++|+|+++.. ...+.+...+......+++|++|.... +..........+.
T Consensus 100 ~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 100 FASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp HHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 100000 00124678999998643 222223222211223566777765432 1111122335789
Q ss_pred ccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 044858 304 VDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVP 349 (426)
Q Consensus 304 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 349 (426)
+.+++.++..+.+.+.+...... --....+.|++.++|.+--+..
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999888776321111 1134577888899998875433
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.60 E-value=2.6e-06 Score=81.81 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=105.0
Q ss_pred CCcccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDALS------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
..+..++|.+..++.+...+. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.-.+
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 456788999999998888773 123467899999999999999999877532 123333322111
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C-h----hhhcCCC---C-CCCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--------D-L----EAIGIPL---A-DDNG 278 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~-~----~~l~~~l---~-~~~~ 278 (426)
.. . .........++.......+.+|+||+++... . . ..+...+ . ....
T Consensus 187 --~~------------~-g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 --KY------------V-GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --cc------------c-chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 0 0111233444444444567899999996431 0 0 1111111 0 1122
Q ss_pred CeEEEEeecchhhh-h-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHH
Q 044858 279 GCKVLLTARSQDVL-S-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPIA 351 (426)
Q Consensus 279 ~s~iivTtr~~~va-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~ 351 (426)
...||.||...... . ........+.+...+.++-.+++...+...... -.......|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45566666543221 1 111223578899999999999998887532221 123467789999988654 555554
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.57 E-value=1.8e-07 Score=86.88 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=85.1
Q ss_pred cccchHHHHHHHHHHhc---------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 152 HFESRKSTLKGILDALS---------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+.+...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 36677766666654432 233457899999999999999998887654322221112333211
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc-----------cChhhhcCCCCCCCCCeEEEEe
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS-----------LDLEAIGIPLADDNGGCKVLLT 285 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~iivT 285 (426)
.+....... .......++... ++.+|+||+++.. .....+...+.....+..+|+|
T Consensus 109 ---------~l~~~~~g~-~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIGH-TAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTTC-HHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcccc-cHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 011111111 111122223222 3469999999733 1122333333233446678888
Q ss_pred ecchhhh-------hccCCceeeEEccCCCHHHHHHHHHHhhC
Q 044858 286 ARSQDVL-------SCEMDCQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 286 tr~~~va-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
|...... .........+.+++++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7643210 00112237899999999999999988774
No 39
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.55 E-value=3.5e-06 Score=82.33 Aligned_cols=185 Identities=17% Similarity=0.212 Sum_probs=105.7
Q ss_pred CCcccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDALS------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
..+..++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... .-++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH-
Confidence 456678898888888877652 123467899999999999999999987621 1123333221
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------hhhhcCCCCC---CCCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-------------LEAIGIPLAD---DNGG 279 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~~ 279 (426)
+.... .+.. . ..+..++......++.+|+||+++.... ...+...+.. ...+
T Consensus 204 ---l~~~~---~g~~---~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LVSKW---LGES---E---KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------C---C---CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HHhhh---cchH---H---HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11110 1100 0 1233444444445789999999975410 1122222211 2345
Q ss_pred eEEEEeecchhhh-h-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 044858 280 CKVLLTARSQDVL-S-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL-PIAIVPIAK 352 (426)
Q Consensus 280 s~iivTtr~~~va-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~~ 352 (426)
..||.||...... . ........+.+...+.++-..+|...+....... -......|++.+.|. +-.|..+..
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666677554321 1 1112335788888889999999988875432111 134567889999984 445554443
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.55 E-value=4.3e-06 Score=77.13 Aligned_cols=184 Identities=12% Similarity=0.125 Sum_probs=104.1
Q ss_pred CCcccccchHHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDALSN------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.+++..... .+.++.+.-.+
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh
Confidence 3566789999988888877631 235678999999999999999999876421 22333322110
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------hhhhc---CCCCCC--C
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-------------LEAIG---IPLADD--N 277 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~---~~l~~~--~ 277 (426)
... .........++......++.+|+||+++.... ...+. ..++.. .
T Consensus 93 --------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------KYV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------SSC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------ccc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 11122333344444445689999999964311 00111 111111 1
Q ss_pred CCeEEEEeecchhhh-hc-cCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHHH
Q 044858 278 GGCKVLLTARSQDVL-SC-EMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPIAK 352 (426)
Q Consensus 278 ~~s~iivTtr~~~va-~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~ 352 (426)
.+..||.||...... .. .......+.+...+.++-..++...+...... -.......|++.+.|.+- ++..+..
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566677654321 10 01223567788888888888888776422111 113456788999999875 5544443
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.54 E-value=1.7e-06 Score=81.95 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=105.1
Q ss_pred CCcccccchHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDALS------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
..+..++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH----
Confidence 345678888888888777652 1123458899999999999999999876422 2223221
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------hhhhcCCC---CCCCCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-------------LEAIGIPL---ADDNGG 279 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~~ 279 (426)
++... .. .........++......++.+|+||+++.... ...+...+ .....+
T Consensus 119 --~l~~~--------~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DLVSK--------WM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HHHSC--------C----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HHhhh--------hc-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 21110 00 11122344455555456789999999975421 11121111 112335
Q ss_pred eEEEEeecchhhh-h-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHH
Q 044858 280 CKVLLTARSQDVL-S-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL-PIAIVPIA 351 (426)
Q Consensus 280 s~iivTtr~~~va-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~ 351 (426)
..||.||...... . ........+.+...+.++-.+++...+....... -......|++.+.|. |-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666666554221 0 0112346788999999999999998876432111 134567889999984 54555544
No 42
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.54 E-value=1.6e-06 Score=81.50 Aligned_cols=166 Identities=11% Similarity=0.115 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------ccceEEEEEec---C
Q 044858 157 KSTLKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFEKVISSRVS---Q 212 (426)
Q Consensus 157 ~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~---~ 212 (426)
++..+.+...+..++ .+.+.++|+.|+|||++|+.+.+...... |++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 445566667666655 45799999999999999999988754321 122 2223221 1
Q ss_pred CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ChhhhcCCCCCCCCCeEEEEee
Q 044858 213 TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK----KETKILIILDDIWGSL--DLEAIGIPLADDNGGCKVLLTA 286 (426)
Q Consensus 213 ~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~iivTt 286 (426)
...+ +.+..+.+.+. .+++-++|+|+++... ..+.+...+.....++.+|++|
T Consensus 87 ~~~i---------------------~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 87 TLGV---------------------DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp SBCH---------------------HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCH---------------------HHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 1122 22223333332 2467899999997542 2333333332233467777776
Q ss_pred cchh-hhhccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 287 RSQD-VLSCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 287 r~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
.+.. +.....+....+++.++++++..+.+.+... . ..+....+++.++|.|..+..+
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 6543 3222223346899999999999999988751 1 1345678999999999866544
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.52 E-value=1.1e-06 Score=85.67 Aligned_cols=203 Identities=13% Similarity=0.169 Sum_probs=113.6
Q ss_pred Cccccc-chHH--HHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFE-SRKS--TLKGILDALSNRN-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~-gR~~--~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.+..|+ |... ....+......+. ...+.|+|++|+||||||+.+++.......-..+++++.+ ++..++.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHH
Confidence 345565 5332 3333444433333 5678999999999999999999877543111124455433 2334444
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC---h-hhhcCCCCC-CCCCeEEEEeecchhhh-----h-
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD---L-EAIGIPLAD-DNGGCKVLLTARSQDVL-----S- 293 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~iivTtr~~~va-----~- 293 (426)
..+.... ...+...+. .++.+|+|||++.... . +.+...+.. ...|..||+||....-. .
T Consensus 177 ~~~~~~~--------~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 177 DSMKEGK--------LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHTTC--------HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHccc--------HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3332110 112223332 2567999999975432 1 222222110 13467888888763211 0
Q ss_pred --ccCCceeeEEccCCCHHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh------cC--CHHH
Q 044858 294 --CEMDCQQNFVVDVLNDKEAWSLFKKMTG--DCIENGELKSVVTEVVKECAGLPIAIVPIAKALK------NK--SPYE 361 (426)
Q Consensus 294 --~~~~~~~~~~l~~L~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~------~~--~~~~ 361 (426)
........+.+++++.++..+++.+.+. +...++ ++...|++.++|.+-.+..+...+. +. +.+.
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~ 324 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKE 324 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 0011125789999999999999988774 211222 3467788999999876654433221 22 6666
Q ss_pred HHHHHHHH
Q 044858 362 WRNALRQL 369 (426)
Q Consensus 362 w~~~l~~l 369 (426)
++.++..+
T Consensus 325 ~~~~l~~~ 332 (440)
T 2z4s_A 325 AILLLKDF 332 (440)
T ss_dssp HHHHTSTT
T ss_pred HHHHHHHH
Confidence 76666543
No 44
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.2e-06 Score=77.87 Aligned_cols=203 Identities=14% Similarity=0.154 Sum_probs=116.1
Q ss_pred ccCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 146 STQDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 146 ~~~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
|...+.++.|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++..... .+.+..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH
Confidence 33456677787777776665543 1235668899999999999999999987643 23333332
Q ss_pred CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------hhhhcCCCC--
Q 044858 213 TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD----------------LEAIGIPLA-- 274 (426)
Q Consensus 213 ~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l~-- 274 (426)
-.+ .... .....+..++.......+++|+||+++.... ...+...+.
T Consensus 218 l~s--------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 218 LVQ--------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp GSC--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hhc--------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 111 1111 1123344555555556799999999975310 111111111
Q ss_pred CCCCCeEEEEeecchhhh----hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHH
Q 044858 275 DDNGGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIA-IVP 349 (426)
Q Consensus 275 ~~~~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~ 349 (426)
....+..||.||...... .+...-...+.++.-+.++-.++|+.++......++.. ...|++.|.|.--| |..
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCSGADVKG 360 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCCHHHHHH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCCHHHHHH
Confidence 223455566677655432 11223456888988889999999988776433222211 35677888875332 222
Q ss_pred H---HHH--hh-cC---CHHHHHHHHHHHh
Q 044858 350 I---AKA--LK-NK---SPYEWRNALRQLK 370 (426)
Q Consensus 350 ~---~~~--l~-~~---~~~~w~~~l~~l~ 370 (426)
+ |.+ ++ ++ +.+++..+++...
T Consensus 361 l~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 361 VCTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp HHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 2 222 22 22 6677777776654
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.47 E-value=1.1e-05 Score=74.69 Aligned_cols=177 Identities=11% Similarity=0.168 Sum_probs=101.6
Q ss_pred CCcccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALSN-------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
....++.|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++..... ++.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-------~i~v---- 80 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISI---- 80 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-------EEEE----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-------EEEE----
Confidence 3456688888777776665531 345678999999999999999999876421 2222
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----hhhhcCCCC--CC
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------D----LEAIGIPLA--DD 276 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 276 (426)
+..++..... +.. ......++.......+.+|+||+++... . ...+...+. ..
T Consensus 81 ~~~~l~~~~~---g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 81 KGPELLTMWF---GES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp CHHHHHHHHH---TTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred EhHHHHhhhc---Cch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2233332221 111 1123344555544568999999997421 0 111211111 12
Q ss_pred CCCeEEEEeecchhhh-hccC---CceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH
Q 044858 277 NGGCKVLLTARSQDVL-SCEM---DCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIA 346 (426)
Q Consensus 277 ~~~s~iivTtr~~~va-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 346 (426)
..+..||.||...... .... .-...+.+...+.++-.+++...+.......+. ....+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 3456777777655322 1111 233578999999999999998887532211111 123566678877654
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.43 E-value=1.5e-06 Score=85.50 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=87.5
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCcc----ce-EEEEEecCCcCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLF----EK-VISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~-~~wv~v~~~~~~~~il~~i 223 (426)
...+++||+.+++.++..+.......+.|+|++|+|||++|+.+++........ .. .+.++.+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 456799999999999999876656677899999999999999999886432100 11 12222220
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchh------hhhccCC
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQD------VLSCEMD 297 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~------va~~~~~ 297 (426)
.. ... .......++..+...++.+|++| ...+..+.+...+. ....++|.+|.... .......
T Consensus 247 --~~----~g~-~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 --KY----RGE-FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred --cc----cch-HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00 000 00123345555555567899999 22222222333332 22456666655443 1111122
Q ss_pred ceeeEEccCCCHHHHHHHHHHhhC
Q 044858 298 CQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 298 ~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
....+.+++.+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 345799999999999999997764
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=6e-06 Score=79.63 Aligned_cols=201 Identities=19% Similarity=0.247 Sum_probs=111.6
Q ss_pred CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
..+.++.|-++.+++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.+..+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhc
Confidence 345667787777766655543 1245678999999999999999999987643 2334333211
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C--------hhhhcCCC--CCC
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--------D--------LEAIGIPL--ADD 276 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~l--~~~ 276 (426)
+ .... .....+..++.......+++|+||+++... . +..+...+ ...
T Consensus 253 s--------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 253 D--------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp C--------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred c--------------ccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 1 1111 112234455555555679999999997431 0 11111111 122
Q ss_pred CCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH-
Q 044858 277 NGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIA-IVPI- 350 (426)
Q Consensus 277 ~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~~- 350 (426)
..+..||.||....... ....-...+.++.-+.++-.++|+.++......++.. ...|++.+.|+--| |..+
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCCHHHHHHHH
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCCHHHHHHHH
Confidence 34556777776554321 1112346788887788888888887764322222211 35677888875432 2222
Q ss_pred --HHHh--h-cC---CHHHHHHHHHHHh
Q 044858 351 --AKAL--K-NK---SPYEWRNALRQLK 370 (426)
Q Consensus 351 --~~~l--~-~~---~~~~w~~~l~~l~ 370 (426)
|.+. + ++ +.+++..+++...
T Consensus 396 ~eA~~~air~~~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 396 TEAGFFAIRDDRDHINPDDLMKAVRKVA 423 (437)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 2222 2 22 5666666666544
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.40 E-value=7.6e-07 Score=75.73 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=43.1
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
....++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999998876677789999999999999999998764
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.38 E-value=1.9e-06 Score=80.69 Aligned_cols=167 Identities=19% Similarity=0.195 Sum_probs=92.6
Q ss_pred HHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcH
Q 044858 160 LKGILDALSNR--NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESES 237 (426)
Q Consensus 160 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~ 237 (426)
...+......+ ....+.|+|++|+||||||+.+++..... .+ ..++++. .++...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-------
Confidence 33444444433 34578999999999999999999877543 11 2344443 23333333332110
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCccC---h-hhhcCCCCC-CCCCeEEEEeecchhhh-----hc---cCCceeeEEc
Q 044858 238 VRAWRLLEQLKKETKILIILDDIWGSLD---L-EAIGIPLAD-DNGGCKVLLTARSQDVL-----SC---EMDCQQNFVV 304 (426)
Q Consensus 238 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~iivTtr~~~va-----~~---~~~~~~~~~l 304 (426)
........+. ++.+|+|||++.... + +.+...+.. ...+.+||+||....-. .. .......+.+
T Consensus 88 -~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 88 -TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp -CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred -cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 0112222332 367999999975432 1 222222110 12356788888654221 00 1111257899
Q ss_pred cCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 044858 305 DVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAI 347 (426)
Q Consensus 305 ~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 347 (426)
++ +.++..+++...+..... .--.+....|++.+ |.+-.+
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHH
Confidence 99 999999999988742111 11145677888888 776543
No 50
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.36 E-value=2.4e-06 Score=90.51 Aligned_cols=158 Identities=14% Similarity=0.252 Sum_probs=89.6
Q ss_pred CCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc---c-c-eEEEEEecCCcCHHHHHHH
Q 044858 148 QDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL---F-E-KVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~-~~~wv~v~~~~~~~~il~~ 222 (426)
....+++||+.++..++..+.....+.+.++|++|+|||+||+.+.+....... . . .+++++.+.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 346678999999999999988666666889999999999999999987643111 1 1 233343321100
Q ss_pred HHHHhCCCccccCcHHHHHHHHHHHhc-CCeEEEEEeCCCCccC-------hh---hhcCCCCCCCCCeEEEEeecchhh
Q 044858 223 IAEKLGLKIDQESESVRAWRLLEQLKK-ETKILIILDDIWGSLD-------LE---AIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~---~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
+... .......+..++..+.. +++.+|+||+++.... ++ .+...+ . ..+..+|.+|.....
T Consensus 240 -----g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 -----GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHHH
T ss_pred -----cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchHH
Confidence 0000 01112234445555543 3689999999975420 11 111111 1 123456655544321
Q ss_pred -----hhccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 292 -----LSCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 292 -----a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
..........+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11122334569999999999999997554
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.7e-05 Score=76.33 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=101.7
Q ss_pred CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
..+.++.|-++.+++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.+..+.-.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh
Confidence 345567787777777766542 1346778999999999999999999987643 2333332211
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------hhhhcCCC--CCC
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD----------------LEAIGIPL--ADD 276 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l--~~~ 276 (426)
..... .....+..++.......+++|+||+++.... ...+...+ ...
T Consensus 281 --------------sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 281 --------------QKYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp --------------CCSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred --------------cccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 11111 1122344555555556799999999974310 00111111 122
Q ss_pred CCCeEEEEeecchhhh----hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 277 NGGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 277 ~~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
..+..||.||...... .+...-...+.+..-+.++-.++|+.++.......+.. ...|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 3345566676554332 11223456888888888888999988775432222211 355778888853
No 52
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2e-05 Score=75.11 Aligned_cols=203 Identities=16% Similarity=0.196 Sum_probs=112.1
Q ss_pred ccCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 146 STQDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 146 ~~~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
|...+.++.|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++..... | +.++.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHH
Confidence 33456667787777776665442 1235679999999999999999999987643 2 2333221
Q ss_pred CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------hhhhcCCC--C
Q 044858 213 TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD----------------LEAIGIPL--A 274 (426)
Q Consensus 213 ~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~l--~ 274 (426)
- ...... .....+..++.......+++|+||+++.... ...+...+ .
T Consensus 252 l--------------~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 252 L--------------IQKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp G--------------CCSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred h--------------hhccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 1 111111 1123344555555556799999999874310 01111111 1
Q ss_pred CCCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHH
Q 044858 275 DDNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVP 349 (426)
Q Consensus 275 ~~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~ 349 (426)
....+..||.||....... +...-...+.+..-+.++-.++|+.++......++. -...|++.+.|+-- -|..
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCCHHHHHH
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCCHHHHHH
Confidence 2234556666776554321 111234567888778888888998877543222221 13457777877532 1222
Q ss_pred H---HHHh--h-cC---CHHHHHHHHHHHh
Q 044858 350 I---AKAL--K-NK---SPYEWRNALRQLK 370 (426)
Q Consensus 350 ~---~~~l--~-~~---~~~~w~~~l~~l~ 370 (426)
+ |.+. + ++ +.+++..+++.+.
T Consensus 395 l~~eA~~~Air~~~~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 395 MCTEAGLLALRERRMQVTAEDFKQAKERVM 424 (437)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence 2 2222 2 22 5667776666554
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=8.3e-06 Score=78.56 Aligned_cols=176 Identities=13% Similarity=0.168 Sum_probs=99.8
Q ss_pred ccCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 146 STQDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 146 ~~~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
|...+.++.|-++.+++|.+.+. -..++-|.++||+|+|||.||+.+++..... .+.++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh
Confidence 33456778888888877766543 1245678999999999999999999987643 22333322
Q ss_pred CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc-------cC---------hhhhcCCCC--
Q 044858 213 TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS-------LD---------LEAIGIPLA-- 274 (426)
Q Consensus 213 ~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-------~~---------~~~l~~~l~-- 274 (426)
-. ..... .....+..++.......+++|+||+++.. .. ...+...+.
T Consensus 251 l~--------------~~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 251 LV--------------QMYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp GC--------------SSCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hh--------------hcccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 11 11111 11223444555444457899999998532 00 011111111
Q ss_pred CCCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 275 DDNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 275 ~~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
....+..||.||....... ....-...+.++.-+.++-.++|+.++......++.. ...|++.+.|+
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCC
Confidence 1223445666776554321 1123346788888888888888877664222122111 35577788775
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.27 E-value=1.9e-05 Score=82.73 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=95.1
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceEEEE-EecCCcCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKVISS-RVSQTPQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv-~v~~~~~~~~il~~i 223 (426)
...+++||+.++..+++.+.......+.|+|++|+|||++|+.+.+....... ..+.++. ..+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 45678999999999999988766677899999999999999999987643211 1233321 11110
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C---hhhhcCCCCCCCCCeEEEEeecchhhh
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--------D---LEAIGIPLADDNGGCKVLLTARSQDVL 292 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~~s~iivTtr~~~va 292 (426)
+...............+++.+...++.+|+|||++... . ...+...+ . ..+.++|.+|......
T Consensus 254 ---~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~-~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 ---LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp ----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-S-SCCCEEEEEECHHHHH
T ss_pred ---hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-h-CCCeEEEEEeCchHHh
Confidence 00000111222344555566655567999999997541 1 11233332 2 2345666666544321
Q ss_pred ------hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 293 ------SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 293 ------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
.........+.+.+.+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1112234579999999999999887654
No 55
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=3e-05 Score=74.60 Aligned_cols=172 Identities=17% Similarity=0.216 Sum_probs=95.8
Q ss_pred CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 148 QDFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
..+.++.|-++.+++|.+.+. -..++-+.++|++|+|||+||+.+++..... .+.++.+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhh
Confidence 456677888877777766543 1245668999999999999999999987643 2334333211
Q ss_pred CHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------C------hhhhcCCCC--CC
Q 044858 215 QIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL----------D------LEAIGIPLA--DD 276 (426)
Q Consensus 215 ~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~~ 276 (426)
+ .... .....+..++.......++++++|+++... . ...+...+. ..
T Consensus 244 ~--------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 244 H--------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp C--------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred c--------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 1 1111 112334455555555679999999985220 0 111111110 22
Q ss_pred CCCeEEEEeecchhhh----hccCCceeeEEccCCCHH-HHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCc
Q 044858 277 NGGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDK-EAWSLFKKMTGDCI--ENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 277 ~~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~Gl 343 (426)
..+..||.||...... .+...-...+++..+++. +-..+|...+.... ...+ ...|++.+.|+
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 3455677777654322 112233457788767554 44556665553222 1223 35577778775
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.24 E-value=2.6e-05 Score=70.15 Aligned_cols=181 Identities=18% Similarity=0.227 Sum_probs=96.3
Q ss_pred CCcccccchHHHHHHHHHH---hcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDA---LSN---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~---l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
..+.+++|.+..++.+.+. +.. ...+-+.|+|++|+||||||+.+.+..... | +.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~---~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E---EEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E---EEEeHHHHHH
Confidence 3556778887766655443 321 123458899999999999999999876421 2 3333221110
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-----------C-----hhhhcCCCC--CCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-----------D-----LEAIGIPLA--DDN 277 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------~-----~~~l~~~l~--~~~ 277 (426)
.... ........+++......+.++++|+++... . ...+...+. ...
T Consensus 84 --------------~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------------MFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------------SCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------------Hhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0001 112233444555544567899999984220 0 011111110 123
Q ss_pred CCeEEEEeecchhhh-hccC---CceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHH
Q 044858 278 GGCKVLLTARSQDVL-SCEM---DCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAG-LPIAIVPI 350 (426)
Q Consensus 278 ~~s~iivTtr~~~va-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~ 350 (426)
.+..||.||...... .... .-...+.+...+.++-.+++...+......++. ....++..+.| .+--|..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHHH
Confidence 355666677654321 1111 223577888888888888888776432211211 13456777888 66555443
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.19 E-value=8.3e-06 Score=85.31 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=88.1
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceEEEEEecCCcCHHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
...+++||+.+++.+...+......-+.++|++|+|||++|+.+.+....... ..+. ++.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~------------ 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM------------ 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC--------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc------------
Confidence 45679999999999999988666667889999999999999999988632110 0111 111111
Q ss_pred HHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchh------hhhccCCc
Q 044858 225 EKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQD------VLSCEMDC 298 (426)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~------va~~~~~~ 298 (426)
+...... ....+..++..+...++.+|++|. ..+....+...+. ....++|.||.... ........
T Consensus 245 ---g~~~~G~-~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 ---GTKYRGE-FEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ---cccccch-HHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 0000000 011233455555556788999992 2222222333332 23456666665543 11111123
Q ss_pred eeeEEccCCCHHHHHHHHHHhhC
Q 044858 299 QQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 299 ~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
...+.+++.+.++..+++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 46799999999999999987654
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.16 E-value=1.7e-06 Score=73.60 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCcc
Q 044858 156 RKSTLKGILDALSN---RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID 232 (426)
Q Consensus 156 R~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~ 232 (426)
+...++.+.++..+ .....+.|+|+.|+|||||++.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 34444555444432 2346899999999999999999998875322222 2233 344555554433321111
Q ss_pred ccCcHHHHHHHHHHHhcCCeEEEEEeCCCC--ccChhh--hcCCCCC-CCCCeEEEEeecch
Q 044858 233 QESESVRAWRLLEQLKKETKILIILDDIWG--SLDLEA--IGIPLAD-DNGGCKVLLTARSQ 289 (426)
Q Consensus 233 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--~~~~~~--l~~~l~~-~~~~s~iivTtr~~ 289 (426)
. .+.+.+. ++-+|||||++. .+.|.. +...+.. ...|..+|+||...
T Consensus 92 ----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 2333333 456999999973 333331 2111111 12466788888654
No 59
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=8.6e-06 Score=75.23 Aligned_cols=144 Identities=18% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhc--CccceEEEEEecC-CcCHHHHHHHHHHHhCCCccc
Q 044858 157 KSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN--NLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDQ 233 (426)
Q Consensus 157 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~~~ 233 (426)
++.+..|...+..++.+...++|+.|+||||+|+.+.+..... .+.+ ..++..+. ..++.++ +++...+....-
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPE- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCS-
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccc-
Confidence 3445666666666667789999999999999999998753211 2233 34454432 2333332 334433321110
Q ss_pred cCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecch-hhhhccCCceeeEEccCCCHH
Q 044858 234 ESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARSQ-DVLSCEMDCQQNFVVDVLNDK 310 (426)
Q Consensus 234 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~~-~va~~~~~~~~~~~l~~L~~~ 310 (426)
.+++-++|+|+++.. ...+.+...+..-.+.+.+|++|.+. .+....... .+++.+++++
T Consensus 80 ---------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~ 142 (305)
T 2gno_A 80 ---------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCH
T ss_pred ---------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHH
Confidence 145679999999754 23344433332233467777776543 332211222 8999999999
Q ss_pred HHHHHHHHhh
Q 044858 311 EAWSLFKKMT 320 (426)
Q Consensus 311 e~~~Lf~~~~ 320 (426)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 60
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.11 E-value=1.3e-06 Score=71.52 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=34.0
Q ss_pred cccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|+...+.++.+.+. .....-|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46788888887777664 22334578999999999999999988653
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.10 E-value=7.2e-05 Score=73.16 Aligned_cols=199 Identities=17% Similarity=0.216 Sum_probs=107.2
Q ss_pred CcccccchHHHHHHHHHH---hccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 149 DFMHFESRKSTLKGILDA---LSNR---------NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~---l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
.+.++.|.+..++++.+. +..+ .++-+.|+|++|+|||+||+.+.+..... | +.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--F---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH
Confidence 455677877665555443 3221 23458899999999999999999876432 2 23333321110
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------------ChhhhcCCCC--CCCC
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL----------------DLEAIGIPLA--DDNG 278 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~ 278 (426)
... ........++.......+++|+||+++... ....+...+. ....
T Consensus 89 --------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 --------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp --------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred --------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 000 011223344555545678999999995431 0112211110 1223
Q ss_pred CeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHH--
Q 044858 279 GCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI-AIVPIA-- 351 (426)
Q Consensus 279 ~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~-- 351 (426)
+..||.||....... ....-...+.+.+.+.++-.+++...+......++. ....|++.+.|..- -|..+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFVGADLENLVNE 231 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCcHHHHHHHHHH
Confidence 566777776654321 111223478888888888888888776532212221 13447888888762 233221
Q ss_pred -HHhh---cC---CHHHHHHHHHHH
Q 044858 352 -KALK---NK---SPYEWRNALRQL 369 (426)
Q Consensus 352 -~~l~---~~---~~~~w~~~l~~l 369 (426)
.++. +. +...+..+++..
T Consensus 232 Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 232 AALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeecHHHHHHHHHHH
Confidence 1121 11 566676666654
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.08 E-value=0.0001 Score=72.52 Aligned_cols=180 Identities=13% Similarity=0.172 Sum_probs=101.7
Q ss_pred CcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 149 DFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
.+..++|.+..+++|.+.+. .....-+.|+|++|+|||++|+.+.+.... ..+.++.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEch----
Confidence 45568899888888877664 134457899999999999999999877532 12333321
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------------ChhhhcCCCC--CCCCCe
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-------------DLEAIGIPLA--DDNGGC 280 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~~s 280 (426)
++. ..+ . .........++.....+++.+|+||+++... ....+...+. ....+.
T Consensus 273 --~l~----~~~----~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 --EIM----SKL----A-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp --HHH----TSC----T-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred --Hhh----hhh----c-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111 100 0 0111223344555555678999999994221 0111111111 123355
Q ss_pred EEEEeecchhhh-h--cc-CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHH
Q 044858 281 KVLLTARSQDVL-S--CE-MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL-PIAIVPI 350 (426)
Q Consensus 281 ~iivTtr~~~va-~--~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 350 (426)
.||.||...... . .. ..-...+.+...+.++-.+++...+.......+ .....+++.+.|. +-.|..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 666676654321 1 11 123357899999999999999988753221111 1134567777775 5445444
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.04 E-value=3e-05 Score=71.64 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALSN--------------RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|++..++.+...+.. .....+.++|++|+|||++|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888888877766543 2345688999999999999999998763
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.98 E-value=0.00055 Score=64.06 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=115.0
Q ss_pred CcccccchHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 149 DFMHFESRKSTLKGILDALSN-----RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
....++|.+..++.+...+.. ..+..+.++|++|+||||||+.+.+..... |. ....+-.....++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~~l---- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQGDM---- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHHHH----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHHHH----
Confidence 456678887777766555542 234678999999999999999999876432 11 1111111111111
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCCCC--------CC----------CCeEEE
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPLAD--------DN----------GGCKVL 283 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l~~--------~~----------~~s~ii 283 (426)
..+...+ .++.++++|++.... ..+.+...+.. .. +...++
T Consensus 94 -----------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 94 -----------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 1111111 134577788875431 11111100000 00 112222
Q ss_pred -Eeecchhhhh-ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------h
Q 044858 284 -LTARSQDVLS-CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPIAIVPIAKAL------K 355 (426)
Q Consensus 284 -vTtr~~~va~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l------~ 355 (426)
.|++...+.. ........+.+++.+.++..+++.+.+..... ....+.+..|++.++|.|-.+..+...+ .
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~ 233 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 233 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 2444333221 11122346899999999999999987642111 2224678899999999998665544322 1
Q ss_pred -c-C-CHHHHHHHHHHHhhccccCCCCcchhhhhhhHHhhhcCCCCC
Q 044858 356 -N-K-SPYEWRNALRQLKRNFLRSFSGTQAVAAYSTIQLSYNQLGGE 399 (426)
Q Consensus 356 -~-~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 399 (426)
. . +.+.-+.+++.+.... ......+ ..+...+.-+|..=|..
T Consensus 234 ~~~~It~~~v~~al~~~~~~~-~~l~~~~-~~~l~~~~~~~~~~~~~ 278 (334)
T 1in4_A 234 KADRINTDIVLKTMEVLNIDD-EGLDEFD-RKILKTIIEIYRGGPVG 278 (334)
T ss_dssp TCSSBCHHHHHHHHHHHTCCT-TCCCHHH-HHHHHHHHHHSTTCCBC
T ss_pred CCCCcCHHHHHHHHHHhCCCc-CCCCHHH-HHHHHHHHHHhCCCcch
Confidence 1 2 6666777777653211 1111111 34555566666544443
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.96 E-value=1.9e-05 Score=73.11 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 153 FESRKSTLKGILDALSNR---------NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.+..+...... ....+
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~l 95 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSRL 95 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHHh
Confidence 567777777766665421 13478999999999999999999876432 1123445544332211 11111
Q ss_pred HHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 224 AEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
++......... ....+...+......+|+||++...
T Consensus 96 ---~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 96 ---IGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp ---HCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred ---cCCCCcccccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 22211110000 0012333343344579999999754
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.93 E-value=9.3e-05 Score=72.51 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=36.3
Q ss_pred CcccccchHHHHHHHHH---HhccC--CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 149 DFMHFESRKSTLKGILD---ALSNR--NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~---~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+..++|.++.++.+.. .+..+ ..+-+.++|++|+|||+||+.+.+...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 34678898887765444 33333 235788999999999999999998764
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.91 E-value=1e-05 Score=73.40 Aligned_cols=175 Identities=21% Similarity=0.225 Sum_probs=87.6
Q ss_pred CcccccchHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 149 DFMHFESRKSTLKGILDALS---N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
.+..++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++..... |- .+..+.-.+.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~~ 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIEM 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTTS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EE---EechHHHHHh
Confidence 34556776655554444332 1 123347799999999999999999876432 21 1111110000
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc-----------------ChhhhcCCCCC---C
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL-----------------DLEAIGIPLAD---D 276 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~---~ 276 (426)
..+.. .. ....+++.....++.+|+|||++... ....+...+.. .
T Consensus 84 ---------~~~~~--~~----~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 84 ---------FVGLG--AS----RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp ---------CSSSC--SS----SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred ---------hcchH--HH----HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 00000 00 01122233333457899999995431 12222222211 1
Q ss_pred CCCeEEEEeecchhhh----hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 044858 277 NGGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLPI 345 (426)
Q Consensus 277 ~~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 345 (426)
.....||.||...... .....-...+.+.+.+.++-.+++...+......++. ....|++.+.|.|-
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~g 219 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLAG 219 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSCH
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCCH
Confidence 1234566676655321 1111223568888899999999998776432111110 02235666777653
No 68
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=7.4e-05 Score=64.45 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc
Q 044858 158 STLKGILDALSNR----NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ 233 (426)
Q Consensus 158 ~~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~ 233 (426)
..++.+..++... ....+.|+|++|+|||+||+.+++..... ...++++++ .++...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~---- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV------PELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH------HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh------HHHHHHHHHHhcc----
Confidence 3445555555432 22678999999999999999999887643 234556554 3444444433211
Q ss_pred cCcHHHHHHHHHHHhcCCeEEEEEeCCCCc--cChhh--hcC-CCCCC-CCCeEEEEeecch
Q 044858 234 ESESVRAWRLLEQLKKETKILIILDDIWGS--LDLEA--IGI-PLADD-NGGCKVLLTARSQ 289 (426)
Q Consensus 234 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~~s~iivTtr~~ 289 (426)
... ..+...+.+ .-+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 104 ~~~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 QTM----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp CCC----HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred chH----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 111 123333433 239999999643 33322 211 11111 2355788888754
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.80 E-value=0.00011 Score=76.18 Aligned_cols=152 Identities=13% Similarity=0.174 Sum_probs=85.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
.++-|.++|++|+|||+||+.+++..... .+.++.+ ++ .. ... ......+..+++.....
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~------~l----~s----k~~-gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGP------EI----MS----KLA-GESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHH------HH----HS----SCT-THHHHHHHHHHHHHTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhH------Hh----hc----ccc-hHHHHHHHHHHHHHHHc
Confidence 35678999999999999999999876532 2333322 11 10 111 11123344555555566
Q ss_pred CeEEEEEeCCCCcc--------Ch-----hhhcCCCC--CCCCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHH
Q 044858 251 TKILIILDDIWGSL--------DL-----EAIGIPLA--DDNGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKE 311 (426)
Q Consensus 251 k~~LlVlDdv~~~~--------~~-----~~l~~~l~--~~~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e 311 (426)
.+++|+||+++... .. ..+...+. ....+..||.||....... ....-...+++..-+.++
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~ 376 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH
Confidence 79999999996431 10 11111110 1123444555665443221 111234678898888888
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 312 AWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 312 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
-.++|...+......++. -...|++++.|.-
T Consensus 377 R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 377 RLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred HHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 899998776533222211 1456778888864
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.74 E-value=6.2e-06 Score=67.21 Aligned_cols=46 Identities=7% Similarity=0.077 Sum_probs=32.0
Q ss_pred cccchHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALSN--RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 467777777777666541 2234478999999999999999987543
No 71
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.72 E-value=0.00019 Score=71.73 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=74.7
Q ss_pred ccchHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 153 FESRKSTLKGILDALS------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
++|-++....+.+.+. ......+.++|++|+||||||+.+....... | ..+.++...+...+.......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC--------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHHHH
Confidence 4565555554433322 2245689999999999999999999877432 2 223333322222221111111
Q ss_pred hCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC------hhhhcCCCCC--------C-------CCCeEEEEe
Q 044858 227 LGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD------LEAIGIPLAD--------D-------NGGCKVLLT 285 (426)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~l~~--------~-------~~~s~iivT 285 (426)
.+.. .......+..... ..-+++||++..... ...+...+.. . .....+|.|
T Consensus 158 ig~~------~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 158 VGAM------PGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred hccC------chHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 1110 0011112222222 234888999975421 1222222210 0 023456666
Q ss_pred ecchhhh-hccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 286 ARSQDVL-SCEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 286 tr~~~va-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
|...... .........+.+.+++.++-..++...+
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6554321 1111233578999999999999888764
No 72
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.67 E-value=0.00046 Score=61.76 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeE
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKI 253 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 253 (426)
-+.|+|++|+|||||++.++..... ..+.+.. .++. ... . ......+..+++......+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~------~~~~----~~~-~----~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASG------SDFV----EMF-V----GVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEH------HHHH----HSC-T----THHHHHHHHHHHHHTTSSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeH------HHHH----HHH-h----hHHHHHHHHHHHHHHhcCCe
Confidence 3899999999999999999987642 1223321 1111 100 0 00111233444444334578
Q ss_pred EEEEeCCCCcc------------C----hhhhcCCCCCC--CCCeEEEEeecchhhhh----ccCCceeeEEccCCCHHH
Q 044858 254 LIILDDIWGSL------------D----LEAIGIPLADD--NGGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKE 311 (426)
Q Consensus 254 LlVlDdv~~~~------------~----~~~l~~~l~~~--~~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e 311 (426)
++++|+++... . ...+...+... ....-++.||....... ....-...+.++..+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999984221 0 11121112111 12233444555544321 111234578888888888
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 312 AWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 312 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
-.+++...+......++. ....+++.+.|.-
T Consensus 191 r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 888887766432211111 1335666777653
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.61 E-value=6.2e-05 Score=78.70 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=81.1
Q ss_pred cccchHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 152 HFESRKSTLKGILDALSN-------R--NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.++|.+..++.+...+.. + ....+.++|++|+|||++|+.+.+..... -...+.++.+.-.+...
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~---- 565 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHS---- 565 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCC----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccc----
Confidence 477888888777776651 1 12268999999999999999999876321 22344555443221000
Q ss_pred HHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ChhhhcCCC-----CC------CCCCeEEEEeecch
Q 044858 223 IAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--DLEAIGIPL-----AD------DNGGCKVLLTARSQ 289 (426)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~l-----~~------~~~~s~iivTtr~~ 289 (426)
. . ...+...+......+|+||++.... ....+...+ .. ...+++||+||...
T Consensus 566 ----------~-~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 566 ----------T-S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ----------C-C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----------c-c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0 0 0111222323344699999996542 122221111 10 12356788888731
Q ss_pred h-------------hhh-ccCCceeeEEccCCCHHHHHHHHHHhh
Q 044858 290 D-------------VLS-CEMDCQQNFVVDVLNDKEAWSLFKKMT 320 (426)
Q Consensus 290 ~-------------va~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 320 (426)
. ... ....-...+.+.+|+.++...++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 000 011223589999999999998887654
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.58 E-value=0.0004 Score=63.71 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+..+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999874
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.55 E-value=0.00015 Score=67.03 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALSN--RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 467777777777766542 3344578999999999999999998653
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.53 E-value=0.0023 Score=57.92 Aligned_cols=153 Identities=12% Similarity=0.151 Sum_probs=81.0
Q ss_pred CcccccchHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 149 DFMHFESRKSTLKGILDALS----N---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
...++.|-++.++.|.+.+. . .-.+-+.|+|++|+|||||++.+...... ..+.+..+.-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 45556676666666555332 0 11223899999999999999999987543 233443322111
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------h----hhhcCCCCC--CCCCe
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD---------L----EAIGIPLAD--DNGGC 280 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~----~~l~~~l~~--~~~~s 280 (426)
. .. ......+..+++......++++++|++..... . ..+...+.. .....
T Consensus 83 ~--------------~~-~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 83 M--------------YV-GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp S--------------TT-HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred h--------------hh-hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 00 00011233344443334689999999964311 0 111111111 12234
Q ss_pred EEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhC
Q 044858 281 KVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 281 ~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
-++.+|....+.. ....-...+.++.-+.++-.++|+....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 4555666554431 1123356788988899999999987764
No 77
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.50 E-value=0.00094 Score=60.65 Aligned_cols=175 Identities=15% Similarity=0.208 Sum_probs=88.7
Q ss_pred CCcccccchHHHHHHHHHH---hcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILDA---LSN---------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~~---l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
..+..++|.+..+.++.+. +.. .-.+-+.|+|++|+|||||++.+...... ..+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH----
Confidence 3456677776655444333 211 11223899999999999999999987642 12333221
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------Ch----hhhcCCCCCCC--
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------DL----EAIGIPLADDN-- 277 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~~----~~l~~~l~~~~-- 277 (426)
++.. .. . ......+..+++......+.++++|++.... .+ ..+...+....
T Consensus 108 --~~~~----~~-~----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 --DFVE----MF-V----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp --HHHH----ST-T----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred --HHHH----HH-h----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 1111 00 0 0001123344444433457899999984210 01 11211222111
Q ss_pred CCeEEEEeecchhhhh----ccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 278 GGCKVLLTARSQDVLS----CEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 278 ~~s~iivTtr~~~va~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
....++.||....... ....-...+.+...+.++-.+++...+......++. ....++..+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 2233444555543321 111234578888889888888888776432211111 1335667777754
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.49 E-value=0.00023 Score=74.43 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 152 HFESRKSTLKGILDALSN---------RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888877777666541 122368999999999999999999876
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.45 E-value=0.0017 Score=63.92 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=90.2
Q ss_pred CCcccccchHHHHHHHHH---HhccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 148 QDFMHFESRKSTLKGILD---ALSNR---------NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 148 ~~~~~~~gR~~~~~~l~~---~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
..+.++.|.++.+.++.+ .+.+. -++-+.|+|++|+|||+||+.++..... ..+.++.+.-.+
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH
Confidence 345667887766555444 33221 1234899999999999999999987642 123343322110
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----hhhhcCCCCC--CC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL------------D----LEAIGIPLAD--DN 277 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~--~~ 277 (426)
.... .....+..+++......++++++|+++... . ...+...+.. ..
T Consensus 103 --------------~~~g-~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 103 --------------MFVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp --------------SCTT-HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred --------------hhhh-hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 0000 000111122222222245899999995321 0 1122111211 12
Q ss_pred CCeEEEEeecchhhhhc-c---CCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 044858 278 GGCKVLLTARSQDVLSC-E---MDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGLP 344 (426)
Q Consensus 278 ~~s~iivTtr~~~va~~-~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 344 (426)
.+..++.||........ . ..-...+.++..+.++-.+++...+......++. ....|++.+.|+.
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 23445556655543211 1 1223578888888888888888766432212211 1345777787765
No 80
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.0012 Score=58.41 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC----ccceEEEEEecCCcCHHHHHHHHHHHhCCCcc----------ccCcH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQREIAEKLGLKID----------QESES 237 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~----------~~~~~ 237 (426)
-.++.|+|++|+|||||+..+........ .-..++|++....++...+. ++++.++.... ..+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999987532211 12467888877655554443 34455554321 11111
Q ss_pred ---HHHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 238 ---VRAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 238 ---~~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
.....+.+.+...+.-+||||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 12233444454457889999998643
No 81
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.34 E-value=0.0016 Score=59.49 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-----cCcHHHH-HHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-----ESESVRA-WRLLEQL 247 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-----~~~~~~~-~~l~~~l 247 (426)
++-|.|++|+|||||+.++.........-..++|++....++.. .+++++.+.+. ....+.+ ..+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999988765532112367899888777753 36777765432 1222333 3333443
Q ss_pred ---hcCCeEEEEEeCCCCc
Q 044858 248 ---KKETKILIILDDIWGS 263 (426)
Q Consensus 248 ---~~~k~~LlVlDdv~~~ 263 (426)
.++++-+||+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4567899999998644
No 82
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.30 E-value=0.0029 Score=59.23 Aligned_cols=159 Identities=7% Similarity=-0.098 Sum_probs=97.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
.-.++..++|+.|.||++.+..+.+..... .|+....+.+....++.++...+.. .-+ -
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~pl-f 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSL-F 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHH-C
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCC-c
Confidence 445789999999999999999998876432 2432222233334455444433211 011 2
Q ss_pred CCeEEEEEeCCCC-c--cChhhhcCCCCCCCCCeEEEEeecch-------hhhhccCCceeeEEccCCCHHHHHHHHHHh
Q 044858 250 ETKILIILDDIWG-S--LDLEAIGIPLADDNGGCKVLLTARSQ-------DVLSCEMDCQQNFVVDVLNDKEAWSLFKKM 319 (426)
Q Consensus 250 ~k~~LlVlDdv~~-~--~~~~~l~~~l~~~~~~s~iivTtr~~-------~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 319 (426)
+++-++|+|+++. . ..++.+...+..-.+++.+|++|... .+..........++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4567889999865 3 34454544443333477777766431 222222344578999999999999888887
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 044858 320 TGDCIENGELKSVVTEVVKECAGLPIAIVPI 350 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 350 (426)
+...... --.+.+..|++.++|.+..+...
T Consensus 155 ~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLE-LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCE-ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCC-CCHHHHHHHHHHhchHHHHHHHH
Confidence 6422211 12456788999999988877654
No 83
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.27 E-value=0.0022 Score=55.64 Aligned_cols=85 Identities=24% Similarity=0.174 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCc-----------cc-cCc-HH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKI-----------DQ-ESE-SV 238 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~-----------~~-~~~-~~ 238 (426)
-.++.|.|++|+|||||+.++.. .. -..++|++.....+...+.. +.+.++... .. ... ..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999988 21 23577887766556555443 433333210 00 111 11
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCc
Q 044858 239 RAWRLLEQLKKETKILIILDDIWGS 263 (426)
Q Consensus 239 ~~~~l~~~l~~~k~~LlVlDdv~~~ 263 (426)
.+..+ ..+...++-+||||.+...
T Consensus 94 ~~~~~-~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSL-KKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHH-HHHCCTTEEEEEEECCCCC
T ss_pred HHHHH-HHHhhcCCCEEEEcCcHHH
Confidence 22222 2333225789999998644
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.26 E-value=0.00068 Score=59.48 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.++.|.|++|+|||||+..+.......+ ..++|+.... +...+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 5899999999999999999986654321 2355555433 44444443
No 85
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.17 E-value=0.00064 Score=62.40 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=42.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe--cCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV--SQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKE 250 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 250 (426)
+++.|+|++|+|||+||.++.... -..++|++. ....+. -..+.......+.+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQH 183 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHHC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhhC
Confidence 567899999999999999998761 112446666 222110 0012233344455556543
Q ss_pred CeEEEEEeCCCCc
Q 044858 251 TKILIILDDIWGS 263 (426)
Q Consensus 251 k~~LlVlDdv~~~ 263 (426)
+ +||+|++...
T Consensus 184 -~-LLVIDsI~aL 194 (331)
T 2vhj_A 184 -R-VIVIDSLKNV 194 (331)
T ss_dssp -S-EEEEECCTTT
T ss_pred -C-EEEEeccccc
Confidence 4 9999999644
No 86
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.16 E-value=0.0027 Score=59.55 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=56.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcC----ccceEEEEEecCCcCHHHHHHHHHHHhCCCcc----------ccCc-
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQREIAEKLGLKID----------QESE- 236 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~----------~~~~- 236 (426)
-.++.|+|++|+||||||.++........ .-..++|++....++...+. +++..++.... ..+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHH
Confidence 36899999999999999999987643211 12468899888877766654 34455554321 0111
Q ss_pred --HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 044858 237 --SVRAWRLLEQLKK--ETKILIILDDIWG 262 (426)
Q Consensus 237 --~~~~~~l~~~l~~--~k~~LlVlDdv~~ 262 (426)
...+..+...+.+ .+.-+||+|.+..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1222334444444 5677999999853
No 87
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.11 E-value=0.002 Score=59.84 Aligned_cols=90 Identities=24% Similarity=0.284 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCc----cceEEEEEecCCcCHHHHHHHHHHHhCCCcc---------ccCcH-
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIKEIQREIAEKLGLKID---------QESES- 237 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~---------~~~~~- 237 (426)
-.++.|+|++|+|||+|+.++......... -..++|++....++...+. ++++.++.... .....
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 358999999999999999999876432110 2367899888877766655 34556654321 01111
Q ss_pred ---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 044858 238 ---VRAWRLLEQLKK-ETKILIILDDIWG 262 (426)
Q Consensus 238 ---~~~~~l~~~l~~-~k~~LlVlDdv~~ 262 (426)
..+..+...+.+ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 123344445544 5678999999853
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.11 E-value=0.0025 Score=59.73 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc------cCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ------ESESVRAWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (426)
-.++.|.|++|+|||||+.++....... -..++|++....++.. .++.++...+. .+....+..+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 3689999999999999999999876542 2346788777666643 45556554321 112222223333
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 044858 246 QLKKETKILIILDDIWGS 263 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~~~ 263 (426)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 333355669999998543
No 89
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.09 E-value=0.00058 Score=72.24 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALSN-------R--NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|.+..+..+...+.. + ....+.|+|++|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468888877777666541 1 124789999999999999999998764
No 90
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.05 E-value=0.0028 Score=58.87 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=56.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhc------------Ccc--ceEEEEEecCCcCHHHHHHHHHHHhCCCcc-----
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN------------NLF--EKVISSRVSQTPQIKEIQREIAEKLGLKID----- 232 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f--~~~~wv~v~~~~~~~~il~~i~~~l~~~~~----- 232 (426)
-.++.|.|++|+|||+||.++....... +.. ..++|++....++...+.. +++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 3689999999999999999998753211 101 4678998888777776654 4455654321
Q ss_pred ----ccCcH----HHHHHHHHHHhc-CCeEEEEEeCCC
Q 044858 233 ----QESES----VRAWRLLEQLKK-ETKILIILDDIW 261 (426)
Q Consensus 233 ----~~~~~----~~~~~l~~~l~~-~k~~LlVlDdv~ 261 (426)
..... ..+..+...+.+ .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 11111 123344455554 556799999985
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.04 E-value=0.0041 Score=65.17 Aligned_cols=153 Identities=13% Similarity=0.177 Sum_probs=83.6
Q ss_pred CcccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 149 DFMHFESRKSTLKGILDALSN-------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
.+.+++|.+..+++|.+++.. .....|.|+|++|+||||||+.+....... | +.++.+
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~---i~v~~~---- 272 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--F---FLINGP---- 272 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--E---EEEEHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--E---EEEEch----
Confidence 345677877777666665531 234579999999999999999998765321 2 233321
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------hhhhcCCCC--CCCCCe
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSLD-------------LEAIGIPLA--DDNGGC 280 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~s 280 (426)
++ ..... ......+..+++......+.++++|++..... ...+...+. ....+.
T Consensus 273 --~l--------~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 273 --EI--------MSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp --HH--------SSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred --Hh--------hhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 11 00000 11112233444444444679999999953210 011111110 112344
Q ss_pred EEEEeecchhhhhcc----CCceeeEEccCCCHHHHHHHHHHhhC
Q 044858 281 KVLLTARSQDVLSCE----MDCQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 281 ~iivTtr~~~va~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
.+|.||......... ..-...+.+...+.++-.+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 555566553221101 12235678888899999999987764
No 92
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.01 E-value=0.003 Score=60.30 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=54.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc----CccceEEEEEecCCcCHHHHHHHHHHHhCCCcc---------ccCc---
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQTPQIKEIQREIAEKLGLKID---------QESE--- 236 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~---------~~~~--- 236 (426)
.++.|+|++|+|||||+.+++-..... ..-..++|++....++...+ ..+++.++.... ....
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 589999999999999999876432211 12345788887766665543 346666664321 0111
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEeCCCC
Q 044858 237 -SVRAWRLLEQLKKETKILIILDDIWG 262 (426)
Q Consensus 237 -~~~~~~l~~~l~~~k~~LlVlDdv~~ 262 (426)
......+...+...+.-+||+|.+..
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHhcCCceEEecchhh
Confidence 12233444445455788999999743
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.97 E-value=0.0012 Score=53.90 Aligned_cols=39 Identities=26% Similarity=0.240 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 211 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 211 (426)
....+.|+|+.|+|||||++.++......+ + ..+++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHH
Confidence 456899999999999999999998775421 2 24555544
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.96 E-value=0.0013 Score=60.77 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHHHhh-hcCccceEEEEEe
Q 044858 156 RKSTLKGILDALSNR---NFNMIGVYGMGGIGKTTLVKEVGRQAK-ENNLFEKVISSRV 210 (426)
Q Consensus 156 R~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~v 210 (426)
+...+..+.+++... ....+.|+|++|+|||+||..+++... ..+ + .+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-V-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-C-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-C-cEEEEEH
Confidence 344445555555431 246788999999999999999999876 432 2 3445544
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.93 E-value=0.0039 Score=58.45 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-----cCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-----ESESVRAWRLLEQ 246 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 246 (426)
-.++.|.|++|+||||||.++....... -..++|++....++.. .++.++...+. ....+....+.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 3689999999999999999998765432 2357888887766643 24556544321 1122222233333
Q ss_pred H-hcCCeEEEEEeCCCC
Q 044858 247 L-KKETKILIILDDIWG 262 (426)
Q Consensus 247 l-~~~k~~LlVlDdv~~ 262 (426)
+ ...+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 3 334567999999854
No 96
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.93 E-value=0.00097 Score=69.10 Aligned_cols=173 Identities=12% Similarity=0.160 Sum_probs=81.5
Q ss_pred CcccccchHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 149 DFMHFESRKSTLKGILDALS-------------NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
....+.|-++.+++|.+.+. -..++-+.++|++|+|||.||+.+.+..... ++.++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~---- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK---- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----
Confidence 34455666766666655443 1124457899999999999999999887642 23332
Q ss_pred HHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C--------hhhhcCCCC--CCC
Q 044858 216 IKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL--------D--------LEAIGIPLA--DDN 277 (426)
Q Consensus 216 ~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~ 277 (426)
..+++ . .+-.. ....+..+++......+++|+||+++... . ...+...+. ...
T Consensus 544 ~~~l~----s----~~vGe-se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 544 GPELL----T----MWFGE-SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp HHHHH----T----TTCSS-CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred cchhh----c----cccch-HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 12221 1 11112 23456677777766789999999986431 0 111111111 112
Q ss_pred CCeEEEEeecchhhh----hccCCceeeEEccCCCHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 044858 278 GGCKVLLTARSQDVL----SCEMDCQQNFVVDVLNDKEAWSLFKKMTGDCIENGELKSVVTEVVKECAGL 343 (426)
Q Consensus 278 ~~s~iivTtr~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 343 (426)
.+.-||-||...... .+...-...+.+..-+.++-.++|+..+......++. -...|++.+.|+
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 233344455443321 1112334567776666666677777666433222221 124455666654
No 97
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.90 E-value=0.0045 Score=56.66 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=47.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKK 249 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 249 (426)
+..+++|+|++|+||||++..+.......... .+..+.... .....+.+....+..+.+.........+...+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 45799999999999999999998876642212 344444332 22333444444444444332222222233333333 2
Q ss_pred CCeEEEEEeCC
Q 044858 250 ETKILIILDDI 260 (426)
Q Consensus 250 ~k~~LlVlDdv 260 (426)
+.=++++|-.
T Consensus 182 -~~dlvIiDT~ 191 (296)
T 2px0_A 182 -EYDHVFVDTA 191 (296)
T ss_dssp -GSSEEEEECC
T ss_pred -CCCEEEEeCC
Confidence 3457888943
No 98
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.86 E-value=0.0055 Score=57.75 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-----cCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-----ESESVRAWRLLEQ 246 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 246 (426)
-.++.|.|++|+||||||.++....... -..++|++....++.. .++.++.+.+. ....+.+....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3578999999999999999988776433 2367899888766643 24555544321 1122222233333
Q ss_pred H-hcCCeEEEEEeCCCC
Q 044858 247 L-KKETKILIILDDIWG 262 (426)
Q Consensus 247 l-~~~k~~LlVlDdv~~ 262 (426)
+ .....-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 3 334556999999853
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.78 E-value=0.0087 Score=52.19 Aligned_cols=89 Identities=25% Similarity=0.296 Sum_probs=51.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc---C-ccceEEEEEecCCcCHHHHHHHHHHHhCCCcc---------cc-C---
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN---N-LFEKVISSRVSQTPQIKEIQREIAEKLGLKID---------QE-S--- 235 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~---------~~-~--- 235 (426)
.+++|+|+.|+|||||++.+....... . .-...+|+.......... +..+.+..+.... .. .
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNH 104 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChHH
Confidence 589999999999999999998743321 1 123467776655444333 3334444433211 00 1
Q ss_pred cHHHHHHHHHHHh-----cCCeEEEEEeCCCC
Q 044858 236 ESVRAWRLLEQLK-----KETKILIILDDIWG 262 (426)
Q Consensus 236 ~~~~~~~l~~~l~-----~~k~~LlVlDdv~~ 262 (426)
.......+...+. ..++-++|+|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1111233344443 45788999999854
No 100
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.77 E-value=0.006 Score=57.31 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=52.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-----cCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-----ESESVRAWRLLEQ 246 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 246 (426)
-.++.|.|++|+||||||.++....... -..++|++....++.. .+..++...+. .........+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 3689999999999999999998776543 2357888887776643 24555544321 1122223333333
Q ss_pred H-hcCCeEEEEEeCCC
Q 044858 247 L-KKETKILIILDDIW 261 (426)
Q Consensus 247 l-~~~k~~LlVlDdv~ 261 (426)
+ ...+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 3 23455699999974
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.70 E-value=0.0019 Score=55.52 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 156 RKSTLKGILDALSN---RNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 156 R~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
|++.++.+.+.+.. ....+|+|.|+.|+||||+++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55666777776653 34578999999999999999999876543
No 102
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.67 E-value=0.0051 Score=59.45 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCC-------CccccCcHH------
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGL-------KIDQESESV------ 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~-------~~~~~~~~~------ 238 (426)
+.+.|+|.+|+|||||+..+......+. .+..+++.+++.. ...++..++...-.. ..-.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3588999999999999999988765432 2344666666554 455565555432100 000111110
Q ss_pred HHHHHHHHHh--cCCeEEEEEeCCC
Q 044858 239 RAWRLLEQLK--KETKILIILDDIW 261 (426)
Q Consensus 239 ~~~~l~~~l~--~~k~~LlVlDdv~ 261 (426)
....+.+++. ++++.||++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1113344443 4899999999994
No 103
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.61 E-value=0.0023 Score=60.04 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=51.7
Q ss_pred HHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEEEEecCCcC-HHHHHHHHHHHhCCCccccCcHH
Q 044858 162 GILDALSN-RNFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQTPQ-IKEIQREIAEKLGLKIDQESESV 238 (426)
Q Consensus 162 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~~~-~~~il~~i~~~l~~~~~~~~~~~ 238 (426)
.+++.+.. .+-..++|+|++|+|||||++.+.+....+ ..+. ++++-+++... +.++.+.+-..+-......+...
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHH
Confidence 34444431 234579999999999999999988765432 1233 34566665542 33332222000000111111111
Q ss_pred H------HHHHHHHH-hcCCeEEEEEeCCC
Q 044858 239 R------AWRLLEQL-KKETKILIILDDIW 261 (426)
Q Consensus 239 ~------~~~l~~~l-~~~k~~LlVlDdv~ 261 (426)
. .-..-+++ .+++.+||++||+.
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 1 11122233 35899999999984
No 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.56 E-value=0.0013 Score=61.66 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=37.2
Q ss_pred cCCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 147 TQDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 147 ~~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..+..++|.+..+..+......+...-+.|+|++|+|||+||+.+.+...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345667889888666554444333334488999999999999999998754
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.56 E-value=0.01 Score=55.63 Aligned_cols=91 Identities=24% Similarity=0.271 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCcc----ceEEEEEecCCcCHHHHHHHHHHHhCCCcc---------cc-C--
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLF----EKVISSRVSQTPQIKEIQREIAEKLGLKID---------QE-S-- 235 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~il~~i~~~l~~~~~---------~~-~-- 235 (426)
-.++.|+|+.|+|||||+.++.......... ..++|++....+....+ ..+++..+.... .. .
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 4689999999999999999998765211001 24578877665544433 334444433211 00 0
Q ss_pred -cHHHHHHHHHHHhc-----CCeEEEEEeCCCCc
Q 044858 236 -ESVRAWRLLEQLKK-----ETKILIILDDIWGS 263 (426)
Q Consensus 236 -~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~ 263 (426)
....+..+...+.. .++-+||+|.+-..
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 11122233333332 46889999998654
No 106
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.55 E-value=0.0028 Score=54.77 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 158 STLKGILDALSN--RNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 158 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+.+++|.+.+.. ++..+|+|+|+.|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345566666553 35579999999999999999999887653
No 107
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.50 E-value=0.017 Score=55.59 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
++.+|.++|++|+||||++..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877664
No 108
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.50 E-value=0.002 Score=57.90 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=32.9
Q ss_pred cccccchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 150 FMHFESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..++|+...+..+.+.+. ......+.|+|++|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4457788877777766554 12235678999999999999999998754
No 109
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.39 E-value=0.011 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-.+++|.|+.|+|||||++.+...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999998843
No 110
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.35 E-value=0.0067 Score=56.41 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|++..++.+...+..+. .+.++|++|+|||+||+.+.+...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhC
Confidence 46788888888887776543 588999999999999999988664
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.35 E-value=0.0023 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|.|+|++|+||||+++.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988754
No 112
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.31 E-value=0.027 Score=51.91 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.++.|.|.+|+||||||.++......++ ..++|++.. .+..++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 5799999999999999999987765433 456777654 4566666666543
No 113
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.29 E-value=0.017 Score=55.98 Aligned_cols=88 Identities=22% Similarity=0.373 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCC--------c------cccCcH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK--------I------DQESES 237 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~--------~------~~~~~~ 237 (426)
.-++|.|.+|+|||+|+.++.+.... .+-+.++++-+.... ...++.+++...-... . .+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 45899999999999999999887543 234677788777654 5667777776542221 0 011111
Q ss_pred ------HHHHHHHHHHhc--CCeEEEEEeCCC
Q 044858 238 ------VRAWRLLEQLKK--ETKILIILDDIW 261 (426)
Q Consensus 238 ------~~~~~l~~~l~~--~k~~LlVlDdv~ 261 (426)
.....+-+++.. ++.+||++||+-
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 122344455543 899999999984
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.29 E-value=0.027 Score=54.11 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
++.+|.++|++|+||||++..+.......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999998777653
No 115
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.28 E-value=0.024 Score=54.68 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
++++|.++|.+|+||||++..+......+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999998877653
No 116
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.27 E-value=0.021 Score=52.68 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+.+|+|.|+.|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999877654
No 117
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.26 E-value=0.0026 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|.|.|+.|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987754
No 118
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.25 E-value=0.025 Score=54.55 Aligned_cols=88 Identities=19% Similarity=0.341 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCC-------------ccccCcH-
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK-------------IDQESES- 237 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~-------------~~~~~~~- 237 (426)
.-++|.|.+|+|||+|+.++.+.... .+-+.++++-+.+.. ...++.+++...-... ...++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHH
Confidence 56899999999999999999887543 234566777777654 5667777776653221 0011111
Q ss_pred -----HHHHHHHHHHh--cCCeEEEEEeCCC
Q 044858 238 -----VRAWRLLEQLK--KETKILIILDDIW 261 (426)
Q Consensus 238 -----~~~~~l~~~l~--~~k~~LlVlDdv~ 261 (426)
.....+-+++. +++.+||++||+-
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11223444454 4899999999984
No 119
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.22 E-value=0.02 Score=50.42 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 222 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~ 222 (426)
.++.|.|++|+|||||+.++....... -..++|++... +..++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH
Confidence 589999999999999999887665432 23466776544 34444433
No 120
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.21 E-value=0.0024 Score=53.03 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEV 192 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v 192 (426)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 121
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.16 E-value=0.003 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 122
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.15 E-value=0.026 Score=51.77 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=47.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH--HHHHHHHHHHhCCCccc---cCcH-HH-HHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI--KEIQREIAEKLGLKIDQ---ESES-VR-AWRL 243 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~il~~i~~~l~~~~~~---~~~~-~~-~~~l 243 (426)
...+|.|+|++|+||||++..+.......+ ..+..+... .+.. .+-+...++..+.+.-. ..+. .. ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 457999999999999999999998776431 234444432 2222 22233445555543211 1111 11 1223
Q ss_pred HHHHhcCCeEEEEEeCCCC
Q 044858 244 LEQLKKETKILIILDDIWG 262 (426)
Q Consensus 244 ~~~l~~~k~~LlVlDdv~~ 262 (426)
...+.. +.-++++|..-.
T Consensus 180 ~~a~~~-~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHT-TCSEEEEEECCC
T ss_pred HHHHhc-CCCEEEEECCCc
Confidence 333433 344888897643
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.15 E-value=0.0035 Score=53.68 Aligned_cols=26 Identities=38% Similarity=0.388 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|.|+|+.|+||||+++.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997763
No 124
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.13 E-value=0.0058 Score=53.26 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 160 LKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444455678899999999999999999987753
No 125
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0033 Score=52.92 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999987653
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.10 E-value=0.0034 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 127
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.07 E-value=0.0044 Score=60.97 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 152 HFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|+++.++.+...+..+ .-+.++|++|+|||+||+.+.+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3678888888887776654 3588999999999999999998764
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.06 E-value=0.0042 Score=53.20 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+..+|+|+|+.|+|||||++.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988765
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.05 E-value=0.0043 Score=52.58 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...+|.|.|++|+||||+++.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998765
No 130
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.04 E-value=0.0041 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+.|.|+|+.|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987653
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.03 E-value=0.058 Score=49.91 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec-CCcCHHHHHHHHHHHhCC
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS-QTPQIKEIQREIAEKLGL 229 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~il~~i~~~l~~ 229 (426)
++..+++|+|+.|+||||+++.+........ . .+.+.... ......+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG-F-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-C-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 4567999999999999999999988766432 2 23333322 122334444555555553
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.03 E-value=0.0034 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.00 E-value=0.0042 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.00 E-value=0.0045 Score=53.00 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998765
No 135
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.99 E-value=0.073 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
++.+|+|+|.+|+||||++..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999876654
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.98 E-value=0.0073 Score=55.02 Aligned_cols=81 Identities=12% Similarity=0.017 Sum_probs=44.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcC-ccceEEEEEecCCcCHHHHHHHHHHHh------CC-CccccCcHHHHH
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFEKVISSRVSQTPQIKEIQREIAEKL------GL-KIDQESESVRAW 241 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~il~~i~~~l------~~-~~~~~~~~~~~~ 241 (426)
+++.+|+|+|+.|+|||||++.+........ .......|+...-.-.......+.... .. ..+...+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4567899999999999999999987765421 122333334443333334444443221 00 012233445555
Q ss_pred HHHHHHhcC
Q 044858 242 RLLEQLKKE 250 (426)
Q Consensus 242 ~l~~~l~~~ 250 (426)
..+..+..+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666666544
No 137
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.97 E-value=0.0046 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987654
No 138
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.94 E-value=0.0046 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+|.|.|+.|+||||+++.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.92 E-value=0.005 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 140
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.90 E-value=0.0047 Score=51.82 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|.|+|++|+||||+++.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987653
No 141
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.89 E-value=0.015 Score=65.73 Aligned_cols=95 Identities=21% Similarity=0.142 Sum_probs=59.6
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc------
Q 044858 160 LKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ------ 233 (426)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~------ 233 (426)
++.++.+..=...+++.|+|++|+|||+||.++....... =..++|+++...++... ++.++.+.+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~ 1487 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQP 1487 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecC
Confidence 5555441111245789999999999999999998765533 33577888877766555 4455533211
Q ss_pred cCcHHHHHHHHHHHhcCCeEEEEEeCCC
Q 044858 234 ESESVRAWRLLEQLKKETKILIILDDIW 261 (426)
Q Consensus 234 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 261 (426)
.+.......+.+...+.+..+||+|.+.
T Consensus 1488 ~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1488 DTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 1122333333444455678899999984
No 142
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.87 E-value=0.022 Score=52.41 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+..+|+|.|+.|+|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34568999999999999999999887654
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.87 E-value=0.0054 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 144
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.0064 Score=52.77 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 159 TLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+.+...+...+.++|+|+|.+|+|||||+..+.....
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344444444445678999999999999999999987753
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.86 E-value=0.0048 Score=53.78 Aligned_cols=108 Identities=16% Similarity=0.082 Sum_probs=58.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHh---
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLK--- 248 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~--- 248 (426)
-.++.|+|+.|+||||++..+..+....+ . .++.+...... . -...++..++...+.... .....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHHh
Confidence 46889999999999999999988876532 2 23333322211 1 112344445543322110 01122333333
Q ss_pred -cCCeEEEEEeCCCCc--cChhhhcCCCCCCCCCeEEEEeecc
Q 044858 249 -KETKILIILDDIWGS--LDLEAIGIPLADDNGGCKVLLTARS 288 (426)
Q Consensus 249 -~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~iivTtr~ 288 (426)
.++.-+|++|.+... +..+.+. .+.+ .|..||+|.+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 234459999999743 2222221 1111 26789999884
No 146
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.86 E-value=0.013 Score=49.73 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec---CCcCHHHHHHHHH---HHhCC--CccccC---c----H
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS---QTPQIKEIQREIA---EKLGL--KIDQES---E----S 237 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~---~~~~~~~il~~i~---~~l~~--~~~~~~---~----~ 237 (426)
..|.|++..|.||||.|--..-+.-..+ + .+.++... .......++..+. .+++. .+.... + .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4677777778999999998887765432 3 33344332 2333444444431 00000 111111 1 1
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCC-----ccChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 238 VRAWRLLEQLKKETKILIILDDIWG-----SLDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 238 ~~~~~l~~~l~~~k~~LlVlDdv~~-----~~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
.......+.+..++-=|||||++-. ....+.+...+........||+|+|...-
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 1223444445445556999999832 22333333333333446789999999643
No 147
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.0062 Score=51.41 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...+|.|.|+.|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999987764
No 148
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0087 Score=54.50 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+.+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 149
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.85 E-value=0.0048 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999998765
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.83 E-value=0.0045 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987764
No 151
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.81 E-value=0.0063 Score=51.65 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..+|.|.|+.|+||||+++.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
No 152
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.79 E-value=0.005 Score=52.08 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.|.|+||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3588999999999999999987654
No 153
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.78 E-value=0.0071 Score=50.20 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..+++.|+|+.|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4578999999999999999999987664
No 154
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.78 E-value=0.0061 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+++.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 155
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.78 E-value=0.0058 Score=52.69 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999987654
No 156
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.77 E-value=0.007 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+|.|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.77 E-value=0.0061 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 158
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.75 E-value=0.0065 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 159
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.74 E-value=0.013 Score=54.59 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 157 KSTLKGILDALS----NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 157 ~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+...+.+++.+. .+....|.|+|+.|+||||+++.+......
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444455555543 455667999999999999999999877653
No 160
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.73 E-value=0.006 Score=54.47 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|.|.|+.|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987653
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.73 E-value=0.0072 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+..+|+|.|+.|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.73 E-value=0.0072 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+...|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 163
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.72 E-value=0.0056 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 164
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.68 E-value=0.0071 Score=50.06 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988754
No 165
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.68 E-value=0.041 Score=50.19 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHHHHHhCCCccc----cCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKIDQ----ESESVRAWRLLEQ 246 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i~~~l~~~~~~----~~~~~~~~~l~~~ 246 (426)
..++.++|.+|+||||++..+.......+ ..+.++..... +...+.++...+..+.+.-. .+....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 56899999999999999999988776432 23445544322 22333344455555543211 1223333445555
Q ss_pred HhcCCeEEEEEeCCC
Q 044858 247 LKKETKILIILDDIW 261 (426)
Q Consensus 247 l~~~k~~LlVlDdv~ 261 (426)
+.....=++++|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 542222378888764
No 166
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.68 E-value=0.012 Score=55.57 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHhc-------------c--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 153 FESRKSTLKGILDALS-------------N--RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677777777766662 0 1345689999999999999999998763
No 167
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.66 E-value=0.0075 Score=51.44 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 446899999999999999999987653
No 168
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.65 E-value=0.007 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988764
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.65 E-value=0.0056 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 170
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.65 E-value=0.0079 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+.++|.|.|++|+||||.|+.+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998764
No 171
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.64 E-value=0.0055 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVG 193 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~ 193 (426)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999644
No 172
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.62 E-value=0.0079 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+|.|.|+.|+||||+++.+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999987654
No 173
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.61 E-value=0.0081 Score=50.46 Aligned_cols=24 Identities=42% Similarity=0.529 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987764
No 174
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.61 E-value=0.007 Score=51.19 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 175
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.61 E-value=0.0062 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988654
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.61 E-value=0.0075 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.60 E-value=0.0077 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988654
No 178
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.59 E-value=0.0089 Score=51.11 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+|.|.|+.|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987653
No 179
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.59 E-value=0.008 Score=53.32 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++.+|+|+|+.|+|||||++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999996653
No 180
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.58 E-value=0.048 Score=49.70 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=48.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc-CHHHHHHHHHHHhCCCccc----cCcHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDQ----ESESVRAWRLLE 245 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~il~~i~~~l~~~~~~----~~~~~~~~~l~~ 245 (426)
...+++|+|.+|+||||++..++......+ ..+.++...... ....-+.......+.+.-. .+........+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999998776432 234444432211 1112233444555543221 122233333444
Q ss_pred HHhcCCeEEEEEeCC
Q 044858 246 QLKKETKILIILDDI 260 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv 260 (426)
.+...+.=++++|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443123457888987
No 181
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.56 E-value=0.008 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 182
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.55 E-value=0.02 Score=54.93 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=53.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcC-ccc-eEEEEEecCC-cCHHHHHHHHHHHhCC-------CccccCcHH-----
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENN-LFE-KVISSRVSQT-PQIKEIQREIAEKLGL-------KIDQESESV----- 238 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~-~~~wv~v~~~-~~~~~il~~i~~~l~~-------~~~~~~~~~----- 238 (426)
-+.|.|..|+|||+|+.++.+.....+ +-+ .++++-+.+. ....++.+++...-.. .....+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 478999999999999999988765421 111 4566666654 4566677766543111 111111111
Q ss_pred -HHHHHHHHHh--cCCeEEEEEeCCC
Q 044858 239 -RAWRLLEQLK--KETKILIILDDIW 261 (426)
Q Consensus 239 -~~~~l~~~l~--~~k~~LlVlDdv~ 261 (426)
....+-+++. .++++||++||+-
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1234555665 3899999999984
No 183
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.54 E-value=0.0084 Score=53.40 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.++.+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999988644
No 184
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.53 E-value=0.015 Score=56.12 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCc--cceEEEEEecCC-cCHHHHHHHHHHHhCCC-------ccccCcHH----
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNL--FEKVISSRVSQT-PQIKEIQREIAEKLGLK-------IDQESESV---- 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~-~~~~~il~~i~~~l~~~-------~~~~~~~~---- 238 (426)
.-++|.|.+|+|||+|+.++.+.....+. =+.++++-+.+. ....++.+++...-... ..+.+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 34678899999999999999988764221 134566666654 35667777776532111 11111111
Q ss_pred --HHHHHHHHHh--cCCeEEEEEeCC
Q 044858 239 --RAWRLLEQLK--KETKILIILDDI 260 (426)
Q Consensus 239 --~~~~l~~~l~--~~k~~LlVlDdv 260 (426)
....+-+++. +++.+||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1223445554 589999999997
No 185
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.53 E-value=0.0054 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 186
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.53 E-value=0.0086 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..|.|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 187
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.53 E-value=0.0081 Score=51.63 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+|+|+|+.|+||||+++.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 188
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.52 E-value=0.025 Score=47.82 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 189
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.50 E-value=0.0099 Score=51.23 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..+|+|.|+.|+||||+++.+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987654
No 190
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.50 E-value=0.0075 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988654
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.50 E-value=0.056 Score=51.85 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
...++.|+|++|+||||++..+.......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999998877643
No 192
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.50 E-value=0.018 Score=50.94 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+..|.|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 193
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.50 E-value=0.01 Score=50.07 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|.|.|+.|+||||+++.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 194
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.47 E-value=0.0098 Score=51.17 Aligned_cols=32 Identities=28% Similarity=0.174 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccce
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK 204 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 204 (426)
..+|+|.|+.|+||||+++.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876542 3444
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.47 E-value=0.0082 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.44 E-value=0.0098 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...|.|.|+.|+||||+++.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999987653
No 197
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.40 E-value=0.0094 Score=51.87 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
....|.|.|+.|+||||+++.+.+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999988754
No 198
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.38 E-value=0.017 Score=54.74 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+.++|++|+|||++|+.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 199
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.38 E-value=0.0096 Score=52.05 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...|.|.|+.|+||||+++.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998765
No 200
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.38 E-value=0.0068 Score=56.84 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=33.7
Q ss_pred HHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhhc-CccceEEEEEecCC
Q 044858 162 GILDALSN-RNFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQT 213 (426)
Q Consensus 162 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~v~~~ 213 (426)
.+++.+.. .+-+-+.|+|.+|+|||+|+.++.+....+ ..+. ++++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45555542 233568999999999999999998876532 1233 345666654
No 201
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.37 E-value=0.012 Score=53.93 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..+++|+|++|+|||||++.+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999877654
No 202
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.36 E-value=0.014 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+.+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999987653
No 203
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.34 E-value=0.071 Score=49.44 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 159 TLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
.++.+..-+.. -.++.|.|.+|+||||||.++....... -..++|++. .-+..++...++.
T Consensus 35 ~LD~~~gGl~~--G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 35 QLDNYTSGFNK--GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp HHHHHHCSBCT--TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHH
T ss_pred HHHHHhcCCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHH
Confidence 34555432222 2579999999999999999998876542 234566554 4455666666544
No 204
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.31 E-value=0.011 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+..+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998754
No 205
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.31 E-value=0.0093 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 206
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.30 E-value=0.0095 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998755
No 207
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.30 E-value=0.011 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 208
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.29 E-value=0.021 Score=54.85 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc--------Cccc-eEEEEEecCC-cCHHHHHHHHHHHhCC-------CccccC
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFE-KVISSRVSQT-PQIKEIQREIAEKLGL-------KIDQES 235 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~v~~~-~~~~~il~~i~~~l~~-------~~~~~~ 235 (426)
.-+.|.|.+|+|||+|+.++.+..... ++-+ .++++-+.+. ....++.+++...-.. .....+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 347899999999999999998876541 1122 4566666654 3556666665442100 111111
Q ss_pred cHH------HHHHHHHHHh--cCCeEEEEEeCCC
Q 044858 236 ESV------RAWRLLEQLK--KETKILIILDDIW 261 (426)
Q Consensus 236 ~~~------~~~~l~~~l~--~~k~~LlVlDdv~ 261 (426)
... ....+-+++. +++++||++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111 1234555665 3899999999984
No 209
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.29 E-value=0.011 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 210
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.28 E-value=0.011 Score=49.92 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 211
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.28 E-value=0.013 Score=54.03 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=29.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 211 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 211 (426)
++.+||+|.|-||+||||.+..+..-....+ ..+.-+.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 3568999999999999999999887766532 235555554
No 212
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.22 E-value=0.013 Score=52.18 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+|+|.|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999986653
No 213
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.20 E-value=0.012 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987654
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.19 E-value=0.0068 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+|+|.|+.|+||||+++.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887653
No 215
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.18 E-value=0.013 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998865
No 216
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.16 E-value=0.013 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 217
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.14 E-value=0.013 Score=48.09 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-.+++|.|+.|+|||||++.+....
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998865
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.10 E-value=0.015 Score=50.08 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988765
No 219
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.10 E-value=0.039 Score=48.60 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 223 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i 223 (426)
.++.|.|.+|+|||++|.++......+. -..+++++.. .+...+.+.+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 5889999999999999999765432211 2245555544 3455555544
No 220
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.09 E-value=0.014 Score=49.65 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
...+|+|+|+.|+||||+++.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999876
No 221
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.05 E-value=0.15 Score=49.41 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
.++.|.|.+|+||||||.++........ -..++|++.. .+..++...++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 5789999999999999999988765421 1246666554 455666666654
No 222
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.02 E-value=0.11 Score=50.41 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=39.1
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 159 TLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.++.+..-+.. -.++.|.|.+|+|||||+.++........ -..++|++.. .+...+...++
T Consensus 192 ~LD~~~gGl~~--G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQR--SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp HHHHHHSSBCT--TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred HHHhhcCCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 35555432222 35799999999999999999988765421 1246666654 34455555553
No 223
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.01 E-value=0.016 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 224
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.01 E-value=0.013 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
++++|+|+.|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999998876653
No 225
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.00 E-value=0.014 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 226
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.97 E-value=0.03 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.+++.|+|+.|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887553
No 227
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.97 E-value=0.016 Score=48.41 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..+|.|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999887643
No 228
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.94 E-value=0.1 Score=44.34 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 226 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~ 226 (426)
.|+|-|.-|+||||.++.+.+.....+ . .++...-+......+..+.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhhc
Confidence 478899999999999999999887643 2 23333333334445555555543
No 229
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.93 E-value=0.051 Score=47.71 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=34.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
..+|.|.|+.|+||||+++.+.+..... .+..+....-+......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887653 355333333332223334444444
No 230
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.91 E-value=0.017 Score=50.61 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.+|+|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 231
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.89 E-value=0.13 Score=49.82 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=38.2
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 159 TLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
.++.++.-+. .-.++.|.|.+|+||||+|.++......+ -..++|++... +..++...++
T Consensus 186 ~LD~~lgGl~--~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 186 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp HHHHHHSSBC--SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHH
Confidence 3455543222 23579999999999999999998877654 23466665543 3344444443
No 232
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.89 E-value=0.017 Score=58.44 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=38.6
Q ss_pred CcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 149 DFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 149 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.+.....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4566889988888777776655 4689999999999999999998764
No 233
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.88 E-value=0.015 Score=49.21 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+++|+|+.|+|||||++.+.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999987664
No 234
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.87 E-value=0.017 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.609 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.+.+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.83 E-value=0.02 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..+++|+|+.|+||||+++.+......
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999887654
No 236
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.82 E-value=0.017 Score=52.71 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.++|.|.|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 237
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.82 E-value=0.038 Score=48.35 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...+|+|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999988764
No 238
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.82 E-value=0.018 Score=49.25 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999987654
No 239
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.81 E-value=0.041 Score=51.66 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=29.3
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 160 LKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 160 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...++..+. .++..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444443 456779999999999999999999876543
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.80 E-value=0.017 Score=50.94 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|+|||||.+.+..-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999998654
No 241
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.78 E-value=0.054 Score=52.79 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 044858 156 RKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (426)
Q Consensus 156 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 199 (426)
....+..+...+.+++ +.+.|.|.+|+|||+++..+.......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3444555555655543 489999999999999999998877654
No 242
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.78 E-value=0.028 Score=47.96 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+.|+|++|+||||+|..+++...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988764
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.78 E-value=0.021 Score=52.11 Aligned_cols=26 Identities=27% Similarity=0.186 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..++|.|+|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45689999999999999999998764
No 244
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.77 E-value=0.052 Score=47.20 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=35.7
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhh-cCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE-NNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
......|.|.|+.|+||||+++.+.+.... .+ +.......-+......+.+++++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g-~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG-VNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-GGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC-ceeeEeeeCCCCChHHHHHHHHHh
Confidence 345678999999999999999999988765 32 443331222223334455555554
No 245
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.75 E-value=0.017 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..|.|.|+.|+||||+++.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988753
No 246
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.73 E-value=0.015 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 247
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.71 E-value=0.02 Score=52.71 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+..+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987654
No 248
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.71 E-value=0.084 Score=59.04 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc------cCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ------ESESVRAWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (426)
-.++.|.|++|+||||||.++....... -..++|++.....+.. . ++.++.+.+. .+.......+.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 3589999999999999999998876543 2256777776665532 1 5556643221 122222233333
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 044858 246 QLKKETKILIILDDIWGS 263 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~~~ 263 (426)
.....+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 333456779999998643
No 249
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.70 E-value=0.018 Score=53.22 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.++|.|+|+.|+|||||+..+.....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999987653
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.69 E-value=0.019 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|+|.|+.|+||||||..+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988654
No 251
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.69 E-value=0.025 Score=54.54 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=34.0
Q ss_pred cccchHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 152 HFESRKSTLKGILDALSN--------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 152 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.++|.++.++.+...+.. ..++-|.++|++|+||||+|+.+......
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 356777666666554421 13456899999999999999999987643
No 252
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.68 E-value=0.071 Score=46.02 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
..|.+.|+.|+||||+++.+.+.....+ +..+....-+....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999998877543 423333333333334555566654
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.68 E-value=0.013 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=16.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVG-RQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 196 (426)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 553
No 254
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.66 E-value=0.023 Score=49.77 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988754
No 255
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.65 E-value=0.11 Score=60.84 Aligned_cols=138 Identities=11% Similarity=0.096 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
+-+.++|++|+|||++|+.+..... .+ ..+.++.+...+...+...+-..+......... ...-...+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~------~~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL------TLLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE------EEEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc------cccCCCCCce
Confidence 4578999999999999987765432 12 345677777777777666665544321100000 0000003678
Q ss_pred EEEEEeCCCCc--cC------hhhhcCCCCC-----CC-------CCeEEEEeecchh------hhhccCCceeeEEccC
Q 044858 253 ILIILDDIWGS--LD------LEAIGIPLAD-----DN-------GGCKVLLTARSQD------VLSCEMDCQQNFVVDV 306 (426)
Q Consensus 253 ~LlVlDdv~~~--~~------~~~l~~~l~~-----~~-------~~s~iivTtr~~~------va~~~~~~~~~~~l~~ 306 (426)
+++.+||+.-. +. .+.+...+.. .. .+..+|.++-... +..........+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 99999997422 21 1111111110 01 1233444443221 1111223457889999
Q ss_pred CCHHHHHHHHHHhh
Q 044858 307 LNDKEAWSLFKKMT 320 (426)
Q Consensus 307 L~~~e~~~Lf~~~~ 320 (426)
.+.++-..+|...+
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888888765
No 256
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.65 E-value=0.052 Score=52.68 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhhhcCccc-eEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHHH---
Q 044858 173 NMIGVYGMGGIGKTTLV-KEVGRQAKENNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESVR--- 239 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~~--- 239 (426)
.-+.|.|..|+|||+|| ..+.+... -+ .++++-+++.. ...++.+.+...-... ...++....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999995 56666542 34 34667776654 5566677666532211 111111111
Q ss_pred ---HHHHHHHHh-cCCeEEEEEeCCC
Q 044858 240 ---AWRLLEQLK-KETKILIILDDIW 261 (426)
Q Consensus 240 ---~~~l~~~l~-~~k~~LlVlDdv~ 261 (426)
...+-+++. +++.+||++||+.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 123334443 4799999999974
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.64 E-value=0.016 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|+|||||.+.+..-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987543
No 258
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.64 E-value=0.012 Score=53.69 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..+|+|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 259
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.62 E-value=0.053 Score=52.68 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=50.6
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhhhcCccc-eEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHHH---
Q 044858 173 NMIGVYGMGGIGKTTLV-KEVGRQAKENNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESVR--- 239 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~~--- 239 (426)
.-+.|.|..|+|||+|| ..+.+... -+ .++++-+++.. .+.++.+.+...-... ...++....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45899999999999995 56766542 34 34667776654 5566666665432111 111111111
Q ss_pred ---HHHHHHHHh-cCCeEEEEEeCCC
Q 044858 240 ---AWRLLEQLK-KETKILIILDDIW 261 (426)
Q Consensus 240 ---~~~l~~~l~-~~k~~LlVlDdv~ 261 (426)
...+-+++. +++.+||++||+.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 123334443 4799999999984
No 260
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.58 E-value=0.019 Score=50.98 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|+|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988654
No 261
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.58 E-value=0.022 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 262
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.57 E-value=0.023 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+|.|.|++|+||+|.|+.+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 263
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.57 E-value=0.022 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.55 E-value=0.077 Score=48.25 Aligned_cols=37 Identities=27% Similarity=0.217 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRV 210 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v 210 (426)
.++.|.|++|+|||||+..+........ -..++|+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~ 72 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAML 72 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 5899999999999999999988765431 113555554
No 265
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.50 E-value=0.022 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++|.|+|+.|+||||||..+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 266
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.46 E-value=0.028 Score=52.74 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...+++|+|+.|+||||+++.+......
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3568999999999999999999887654
No 267
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.45 E-value=0.016 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999876
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.40 E-value=0.023 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|+|+.|+|||||++.+..-..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999986543
No 269
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.38 E-value=0.024 Score=54.54 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.1
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+.+.+|.|+|++|+||||+|+.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456799999999999999999998764
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.37 E-value=0.02 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 271
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.36 E-value=0.02 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999987543
No 272
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.36 E-value=0.073 Score=51.76 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhhh----cCccc-eEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHH
Q 044858 173 NMIGVYGMGGIGKTTLV-KEVGRQAKE----NNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESV 238 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~ 238 (426)
.-+.|.|..|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+.+...-... ...++...
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 45789999999999995 566666542 12233 46677777654 5566666665532111 11111111
Q ss_pred H------HHHHHHHHh-cCCeEEEEEeCCC
Q 044858 239 R------AWRLLEQLK-KETKILIILDDIW 261 (426)
Q Consensus 239 ~------~~~l~~~l~-~~k~~LlVlDdv~ 261 (426)
. ...+-+++. +++.+||++||+.
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 1 112333443 4799999999984
No 273
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.32 E-value=0.12 Score=57.78 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc------cCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ------ESESVRAWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~------~~~~~~~~~l~~ 245 (426)
-++|-|+|+.|+||||||.++....... -...+|+...+..++.- ++.+|.+.+. ......+.....
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4789999999999999999998765433 45678998888777663 7778876543 112223333444
Q ss_pred HHhcCCeEEEEEeCCC
Q 044858 246 QLKKETKILIILDDIW 261 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~ 261 (426)
.+..+..-+||+|-|-
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 4455677899999884
No 274
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.31 E-value=0.01 Score=62.10 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=80.8
Q ss_pred cccccchHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH
Q 044858 150 FMHFESRKSTLKGILDALSN-------------RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 216 (426)
Q Consensus 150 ~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 216 (426)
...+.|-+..++.+.+.+.- .....+.++|++|+|||+||+.+++..... |- .+..+.-.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~--~i---~v~~~~l~-- 548 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FI---SIKGPELL-- 548 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC--CC---CCCCSSST--
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC--EE---EEechHhh--
Confidence 44556666666666655431 133568899999999999999999887532 21 11111110
Q ss_pred HHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------------ChhhhcCCCCC--CCC
Q 044858 217 KEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETKILIILDDIWGSL----------------DLEAIGIPLAD--DNG 278 (426)
Q Consensus 217 ~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~ 278 (426)
....... ...+..+++......+++++||+++... ....+...+.. ...
T Consensus 549 ------------~~~~g~~-~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 549 ------------TMWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp ------------TCCTTTS-SHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred ------------hhhcCcc-HHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 0001111 1233445555444456899999985320 01223333321 122
Q ss_pred CeEEEEeecchhhh-hccC---CceeeEEccCCCHHHHHHHHHHhhC
Q 044858 279 GCKVLLTARSQDVL-SCEM---DCQQNFVVDVLNDKEAWSLFKKMTG 321 (426)
Q Consensus 279 ~s~iivTtr~~~va-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 321 (426)
+..||.||...... .... .-...+.+...+.++-.++++..+.
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 34455566543221 1111 2234677888888888899888764
No 275
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.31 E-value=0.11 Score=58.86 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=53.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccc-----cCcHHH-HHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQ-----ESESVR-AWRLLE 245 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~-----~~~~~~-~~~l~~ 245 (426)
..++.|.|++|+||||||.++....... -..++|++.....+... ++.++.+.+. ....+. ...+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4689999999999999999998876543 23578888877766432 5566654321 112222 222222
Q ss_pred HHhcCCeEEEEEeCCCC
Q 044858 246 QLKKETKILIILDDIWG 262 (426)
Q Consensus 246 ~l~~~k~~LlVlDdv~~ 262 (426)
...+.+.-+||+|.+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 22345567999999853
No 276
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.29 E-value=0.025 Score=48.34 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=21.3
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..+.--|+|+|.+|+|||||...+.+..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3444568999999999999999888643
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.29 E-value=0.022 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|+|||||.+.+..-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999997643
No 278
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.29 E-value=0.062 Score=49.17 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=30.3
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
....++|+|+|-||+||||+|..+.......+ ..++-+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 34668999999999999999999988776532 2455555543
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.28 E-value=0.025 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 280
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.28 E-value=0.026 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.26 E-value=0.022 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|+|||||.+.+..-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.25 E-value=0.041 Score=49.19 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC-CcCHHHHHHHHHH--HhCCCccccCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAE--KLGLKIDQESESVRAWRLLEQL 247 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~il~~i~~--~l~~~~~~~~~~~~~~~l~~~l 247 (426)
.-.+++|+|+.|+|||||++.+....... +...+++.-.. .+-.... ..+.. .++.. .......+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~-----~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGED-----TKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT-----BSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCC-----HHHHHHHHHHHH
Confidence 44689999999999999999998765432 12222221110 0000000 00000 01100 011223445555
Q ss_pred hcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 248 KKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 248 ~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
.. ++=++++|+..+.+....+... ...|..|++||.....
T Consensus 96 ~~-~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 RE-DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HH-CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred hh-CCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 54 4668888999755433332211 1236668888876553
No 283
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.25 E-value=0.02 Score=49.58 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|+|||||.+.+..-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999997654
No 284
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.24 E-value=0.16 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..++|.|++|+||||+|+.+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999988764
No 285
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.23 E-value=0.098 Score=45.12 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=26.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccce
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK 204 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 204 (426)
...|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3579999999999999999999887653 3444
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.21 E-value=0.023 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.20 E-value=0.024 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|+|+.|+|||||.+.+..-..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999999999986543
No 288
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.19 E-value=0.024 Score=50.30 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|+|||||.+.+..-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999987653
No 289
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.17 E-value=0.026 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-.+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.17 E-value=0.037 Score=51.10 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..+|+|+|++|+||||++..+......
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999887664
No 291
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.16 E-value=0.029 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..|+|+|..|+|||||.+.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.16 E-value=0.027 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4689999999999999999987643
No 293
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.15 E-value=0.024 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 294
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.08 E-value=0.026 Score=50.38 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997643
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.04 E-value=0.034 Score=50.78 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+-.+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.02 E-value=0.031 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-.+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999754
No 297
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.98 E-value=0.052 Score=48.28 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...++.+.|.+|+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987665
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.97 E-value=0.031 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||++.+..-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997643
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.97 E-value=0.028 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|+.|+|||||.+.+..-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 579999999999999999987643
No 300
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.97 E-value=0.04 Score=53.68 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...+++|+|+.|+|||||++.+......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3569999999999999999999887654
No 301
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.93 E-value=0.2 Score=49.32 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 225 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~ 225 (426)
.++.|.|.+|+||||||.++......+. -..++|++... +..++...++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHH
Confidence 5789999999999999999988765431 12466766543 45666665543
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.93 E-value=0.038 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..|+|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998763
No 303
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.93 E-value=0.028 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.92 E-value=0.032 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.91 E-value=0.029 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+++|+|+.|+|||||.+.+..-..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5799999999999999999986543
No 306
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.90 E-value=0.086 Score=49.20 Aligned_cols=29 Identities=38% Similarity=0.450 Sum_probs=24.8
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+...+++.+.|.||+||||+|..+.....
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 45568999999999999999999887665
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.90 E-value=0.029 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999987643
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.86 E-value=0.026 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 309
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.84 E-value=0.044 Score=48.08 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 310
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.84 E-value=0.035 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 311
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.83 E-value=0.039 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
++|+|.|+.|+||||||..+.....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999987653
No 312
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.80 E-value=0.041 Score=44.54 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998765
No 313
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.79 E-value=0.038 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 314
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.78 E-value=0.093 Score=48.69 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=25.1
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+...+++.+.|.||+||||+|..+......
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 445678899999999999999999877654
No 315
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.76 E-value=0.032 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999998764
No 316
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.08 Score=44.39 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988653
No 317
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.73 E-value=0.036 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.++.|+|++|+|||||+.++.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999987544
No 318
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.69 E-value=0.029 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+..+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999998875
No 319
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.64 E-value=0.043 Score=51.78 Aligned_cols=27 Identities=22% Similarity=0.023 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+...+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999999753
No 320
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.62 E-value=0.034 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+.+++.|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999998653
No 321
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.073 Score=44.45 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.2
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 162 GILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 162 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.+.+ +...+..-|.|+|..|+|||||...+...
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 33445567899999999999999999854
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.58 E-value=0.046 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+.+|+|+.|+|||||+..++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 323
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.56 E-value=0.54 Score=41.07 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 156 RKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 156 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
|....+.+..++.. + -+.|+|+.|.|||.+|..+....
T Consensus 95 ~~~Q~~ai~~~~~~-~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD-K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT-S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC-C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 44444444444433 2 37789999999999998887654
No 324
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.55 E-value=0.081 Score=51.94 Aligned_cols=45 Identities=9% Similarity=-0.110 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 154 ESRKSTLKGILDALS--NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 154 ~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+.|.+..+.+.+... ..+..+|.+.|+.|+||||+|+.+......
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 345444455555442 234568999999999999999999998764
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.52 E-value=0.043 Score=44.45 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 326
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.52 E-value=0.23 Score=48.75 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC-HHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ-IKEIQREI 223 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~il~~i 223 (426)
.-++|.|..|+|||+|+.++.+... -+.++++-+++..+ ..++++++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 5689999999999999999876532 35677888876654 55555554
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.49 E-value=0.044 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 328
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.49 E-value=0.05 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 329
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.49 E-value=0.038 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997643
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.48 E-value=0.041 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|.|+.|+|||||.+.+.--.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3589999999999999999998643
No 331
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.44 E-value=0.045 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|.|+|.+|+|||||...+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999865
No 332
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.43 E-value=0.054 Score=44.95 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHH
Q 044858 162 GILDALSN-RNFNMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 162 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
++.+.+.. .+...|+|+|..|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34443434 4556789999999999999998874
No 333
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.42 E-value=0.061 Score=45.25 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
.++.|+|+.|+||||++..+..+....+ .. ++.+....+. ..-...+...++........ .....+.+.+. ++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~~-v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~-~~~~~~~~~~~-~~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-KK-VAVFKPKIDS--RYHSTMIVSHSGNGVEAHVI-ERPEEMRKYIE-EDT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-CE-EEEEEEC-------CCCEECC----CEECEEE-SSGGGGGGGCC-TTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-Ce-EEEEeecccc--ccCcccEEecCCCceeeEEE-CCHHHHHHHhc-CCC
Confidence 4788999999999999977776654322 22 2233222110 00000011111111110000 00112222222 346
Q ss_pred EEEEEeCCCCc-cChhhhcCCCCCCCCCeEEEEeecch
Q 044858 253 ILIILDDIWGS-LDLEAIGIPLADDNGGCKVLLTARSQ 289 (426)
Q Consensus 253 ~LlVlDdv~~~-~~~~~l~~~l~~~~~~s~iivTtr~~ 289 (426)
-+|++|++... .+|......+.+ .+..|++|.+..
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESB
T ss_pred CEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeecc
Confidence 69999999765 345443322222 277899988854
No 334
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.40 E-value=0.23 Score=48.07 Aligned_cols=85 Identities=25% Similarity=0.282 Sum_probs=50.2
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhhhcCccc-eEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCcHHH---
Q 044858 173 NMIGVYGMGGIGKTTLV-KEVGRQAKENNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESESVR--- 239 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~~~~--- 239 (426)
.-+.|.|..|+|||+|+ ..+.+.. +-+ .++++-+++.. .+.++.+++...-... ...++....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 45789999999999996 5666642 233 35677777654 4566777665432111 111111111
Q ss_pred ---HHHHHHHHh-cCCeEEEEEeCCC
Q 044858 240 ---AWRLLEQLK-KETKILIILDDIW 261 (426)
Q Consensus 240 ---~~~l~~~l~-~~k~~LlVlDdv~ 261 (426)
...+-+++. ++++.||++||+-
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 112333332 5899999999984
No 335
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.35 E-value=0.066 Score=44.60 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998764
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.34 E-value=0.057 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
....|.|+|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 337
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.31 E-value=0.079 Score=45.94 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecC
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 212 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 212 (426)
.|.+.|.||+||||+|..+......++ ++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence 478999999999999999988876543 33 33444443
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.28 E-value=0.071 Score=49.95 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=58.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCH--HHHHHHHHHHhCCCccccCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI--KEIQREIAEKLGLKIDQESESVRAWRLLEQLK 248 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 248 (426)
...+++|+|+.|+|||||.+.+....... ....+ +++..+... ... ..+..+... ..........+...+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~---~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFVHESK-KCLVNQREV---HRDTLGFSEALRSALR 194 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSCCCCS-SSEEEEEEB---TTTBSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhhhhcc-ccceeeeee---ccccCCHHHHHHHHhh
Confidence 34589999999999999999998765432 11111 122221110 000 000000000 0011112234455555
Q ss_pred cCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhhh
Q 044858 249 KETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDVL 292 (426)
Q Consensus 249 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~va 292 (426)
..+=+|++|++.+.+.++.+... ...|..||+||.....+
T Consensus 195 -~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 -EDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp -SCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred -hCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 46788999999876655543222 12366688888877654
No 339
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.27 E-value=0.12 Score=44.98 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...|.|.|+.|+||||+++.+.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988764
No 340
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.22 E-value=0.04 Score=53.12 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
++.+|.|+|++|+||||++..+......
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999877653
No 341
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.22 E-value=0.065 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.21 E-value=0.05 Score=49.42 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|+|+.|+|||||.+.+..-..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35899999999999999999986543
No 343
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.19 E-value=0.17 Score=50.23 Aligned_cols=27 Identities=33% Similarity=0.297 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
-.++.|.|+.|+|||||++.++.....
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 358999999999999999999876554
No 344
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.17 E-value=0.063 Score=47.97 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 211 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 211 (426)
++|+|.|.||+||||+|..+.......+ ..++-+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCC
Confidence 5788899999999999999988776432 234555554
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.16 E-value=0.056 Score=43.87 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~ 196 (426)
|+|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
No 346
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.15 E-value=0.05 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|.|+.|+|||||.+.+.--.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999997543
No 347
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.15 E-value=0.1 Score=48.76 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367899999999999999999987544
No 348
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.15 E-value=0.045 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45899999999999999998754
No 349
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.14 E-value=0.039 Score=50.52 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34689999999999999999987643
No 350
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.11 E-value=0.051 Score=50.93 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 351
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.10 E-value=0.054 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998653
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.10 E-value=0.055 Score=43.94 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999998653
No 353
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.08 E-value=0.054 Score=46.74 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999997754
No 354
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.06 E-value=0.062 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+...|+|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999765
No 355
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.05 E-value=0.22 Score=49.11 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=34.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCC-cCHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREI 223 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~il~~i 223 (426)
-.-++|.|..|+|||+|+.++.+... -+.++++-+.+. ....++++++
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred CCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 35689999999999999999987643 356777777765 3455555543
No 356
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.04 E-value=0.057 Score=43.81 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999987653
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.03 E-value=0.057 Score=43.89 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 358
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.01 E-value=0.053 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+.--.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3589999999999999999998644
No 359
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.00 E-value=0.053 Score=44.19 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-|.|+|..|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987654
No 360
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.99 E-value=0.053 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999864
No 361
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.99 E-value=0.035 Score=49.60 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
+...|+|.|..|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998765
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.98 E-value=0.054 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|.|+.|+|||||.+.+.--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3589999999999999999998643
No 363
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.98 E-value=0.11 Score=46.21 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=28.0
Q ss_pred HHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 160 LKGILDALSNR--NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 160 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...+..++... +...+.++|++|+|||.+|..+.+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34456666543 24579999999999999999998853
No 364
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.96 E-value=0.059 Score=44.02 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999998865
No 365
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.054 Score=44.23 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 366
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.94 E-value=0.054 Score=44.18 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-|.|+|.+|+|||||...+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998654
No 367
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.93 E-value=0.055 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|.|+.|+|||||.+.+.--.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3589999999999999999997643
No 368
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.91 E-value=0.11 Score=45.60 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcC
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 215 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 215 (426)
|+|.|.||+||||+|..+.......+ ..++-+......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcC
Confidence 66799999999999999998876543 3455666654444
No 369
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.91 E-value=0.059 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|+|+|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999865
No 370
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.87 E-value=0.036 Score=55.86 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHHHhccCCcc-----------EEEEEcCCCCcHHHHHHHHHHHh
Q 044858 153 FESRKSTLKGILDALSNRNFN-----------MIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 153 ~~gR~~~~~~l~~~l~~~~~~-----------vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
++|.+..+..+.-.+..+..+ -+.++|++|+|||+||+.+.+..
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 456665555554444333211 58899999999999999998765
No 371
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.87 E-value=0.061 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999887764
No 372
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.86 E-value=0.056 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..-|.|+|.+|+|||||...+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999987653
No 373
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.86 E-value=0.056 Score=44.00 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~ 194 (426)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 374
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.85 E-value=0.053 Score=52.67 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHHHhhhcCccc-eEEEEEecCCc-CHHHHHHHHHHHhCCC-------ccccCc------
Q 044858 173 NMIGVYGMGGIGKTTLV-KEVGRQAKENNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLK-------IDQESE------ 236 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~-~~~~il~~i~~~l~~~-------~~~~~~------ 236 (426)
.-+.|.|..|+|||+|| ..+.+... -+ .++++-+++.. ...++.+.+...-... ...++.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999995 56766543 34 34667776654 4555655554321110 001110
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCC
Q 044858 237 SVRAWRLLEQLK-KETKILIILDDIW 261 (426)
Q Consensus 237 ~~~~~~l~~~l~-~~k~~LlVlDdv~ 261 (426)
......+-+++. +++.+||++||+.
T Consensus 240 ~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 111222333332 4799999999973
No 375
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.84 E-value=0.058 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|.|+.|+|||||.+.+.--.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 579999999999999999998643
No 376
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.81 E-value=0.061 Score=43.92 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~ 194 (426)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 377
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.80 E-value=0.14 Score=46.28 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 211 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 211 (426)
.++|+|.|.||+||||+|..+.......+ ..+.-+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 36788899999999999999988776432 234555554
No 378
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.80 E-value=0.059 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|.|+.|+|||||.+.+.--.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3589999999999999999997543
No 379
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.79 E-value=0.064 Score=44.22 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|+|+|.+|+|||||...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999998764
No 380
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.77 E-value=0.064 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999764
No 381
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.77 E-value=0.065 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999998754
No 382
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.76 E-value=0.073 Score=44.55 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...|+|+|..|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4568999999999999999998764
No 383
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.75 E-value=0.077 Score=45.33 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+|.|.|+.|+||||+++.+.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998765
No 384
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.69 E-value=0.11 Score=51.61 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..+++|+|+.|+|||||++.+......
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3468999999999999999999987753
No 385
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.67 E-value=0.1 Score=47.67 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=25.3
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 160 LKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
++++.+.+.. .+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3455555432 578999999999999999998 54
No 386
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.66 E-value=0.069 Score=43.47 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|+|+|..|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 387
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.65 E-value=0.094 Score=44.42 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
+..-|+|+|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999875
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.63 E-value=0.05 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|.|+.|+|||||.+.+.--.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3589999999999999999998644
No 389
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.63 E-value=0.082 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|+|+|..|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998875
No 390
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.62 E-value=0.1 Score=49.24 Aligned_cols=110 Identities=19% Similarity=0.162 Sum_probs=55.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEE-EEEecCCcCHHHHHHHHHHH--hCCCccccCcHHHHHHHHHH
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVI-SSRVSQTPQIKEIQREIAEK--LGLKIDQESESVRAWRLLEQ 246 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~v~~~~~~~~il~~i~~~--l~~~~~~~~~~~~~~~l~~~ 246 (426)
....+++|+|+.|+|||||++.+....... ....+ ++...-......- ..+..| ++. +. ......+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~--~~---~~~~~~l~~~ 205 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE--DT---KSFADALRAA 205 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCS-SSEEEEEEBTT--TB---SCSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccC-ceEEEeeecCC--CH---HHHHHHHHHH
Confidence 345689999999999999999998765432 11222 2221110000000 000000 000 00 1112344555
Q ss_pred HhcCCeEEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchhh
Q 044858 247 LKKETKILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQDV 291 (426)
Q Consensus 247 l~~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 291 (426)
+.. .+=+|++|++.+.+......... ..|..|+.|+....+
T Consensus 206 L~~-~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 206 LRE-DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TTS-CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhh-CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 554 56789999998655443322211 235567777776543
No 391
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.61 E-value=0.063 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|.|+|.+|+|||||...+....
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 458899999999999999987653
No 392
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.61 E-value=0.069 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998864
No 393
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.55 E-value=0.21 Score=43.03 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...|.+.|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999988764
No 394
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.53 E-value=0.068 Score=44.85 Aligned_cols=24 Identities=38% Similarity=0.286 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|.|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358899999999999997766543
No 395
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.51 E-value=0.073 Score=43.79 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..-|.|+|..|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998654
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.51 E-value=0.076 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.-|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999874
No 397
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.50 E-value=0.11 Score=49.74 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
....+++|+|+.|+|||||.+.+.....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456899999999999999999987654
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.49 E-value=0.066 Score=50.40 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..++|+|+.|+|||||++.+......
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999876543
No 399
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.48 E-value=0.083 Score=52.25 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+|.++|++|+||||+|+.+.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987664
No 400
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.48 E-value=0.067 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|..|+|||||...+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999988653
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.44 E-value=0.058 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-|+|+|.+|+|||||...+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998864
No 402
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.43 E-value=0.069 Score=43.95 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|.|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998754
No 403
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.41 E-value=0.075 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998654
No 404
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.40 E-value=0.064 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 405
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.40 E-value=0.07 Score=44.27 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|.|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999865
No 406
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.39 E-value=0.083 Score=49.14 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+..+++|+|++|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4557899999999999999999986654
No 407
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.39 E-value=0.095 Score=42.76 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..|.|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999764
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.37 E-value=0.077 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|+|+|..|+|||||...+....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998643
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.34 E-value=0.047 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
-.+++|+|+.|+|||||.+.+.--.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998543
No 410
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.32 E-value=0.074 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-.+++|+|+.|+|||||.+.+..-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 358999999999999999999753
No 411
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.29 E-value=0.084 Score=44.30 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|+|+|..|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358899999999999999998754
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.28 E-value=0.08 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|+|+|..|+|||||...+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999988643
No 413
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.24 E-value=0.18 Score=42.80 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=30.1
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHH
Q 044858 173 NMIGVY-GMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIK 217 (426)
Q Consensus 173 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 217 (426)
++|+|+ +.||+||||+|..+.......+ ..++.+......+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHH
Confidence 567776 7799999999999988776532 245666665544433
No 414
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.23 E-value=0.061 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVG 193 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~ 193 (426)
..-|+|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999985
No 415
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.22 E-value=0.065 Score=50.37 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+++|+|+.|+|||||++.+.....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5799999999999999999987654
No 416
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.21 E-value=0.26 Score=50.23 Aligned_cols=63 Identities=25% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHH
Q 044858 157 KSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 224 (426)
Q Consensus 157 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~ 224 (426)
+...+.+...|... .+..|+||+|+|||+.+.++....-.+ ...+.++...+..+..++..+.
T Consensus 192 ~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 34455566555433 467899999999996555544433222 2356666666666666666654
No 417
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.21 E-value=0.076 Score=44.04 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|..|+|||||...+....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 458899999999999999998653
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.21 E-value=0.083 Score=43.80 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-|+|+|.+|+|||||...+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998754
No 419
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.18 E-value=0.27 Score=42.06 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+.|+|-|.-|+||||+++.+.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.17 E-value=0.085 Score=43.61 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998764
No 421
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.15 E-value=0.076 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHH
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.+..-|+|+|.+|+|||||...+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445689999999999999999864
No 422
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.15 E-value=0.086 Score=43.64 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999854
No 423
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.12 E-value=0.24 Score=42.37 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=30.7
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHH
Q 044858 174 MIGV-YGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEI 219 (426)
Q Consensus 174 vi~I-~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~i 219 (426)
+|+| .+.||+||||+|..+.......+ .+.-+......+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 4555 57899999999999998877542 5667776655544433
No 424
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.12 E-value=0.078 Score=44.92 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..-|+|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987653
No 425
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.12 E-value=0.067 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~ 194 (426)
-|+|+|+.|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999764
No 426
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.12 E-value=0.087 Score=43.46 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|+|+|..|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999987653
No 427
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.12 E-value=0.087 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999988653
No 428
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.12 E-value=0.078 Score=43.72 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998754
No 429
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.11 E-value=0.085 Score=43.93 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+..-|.|+|.+|+|||||...+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998654
No 430
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.09 E-value=0.054 Score=46.24 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
....|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999988754
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.087 Score=44.85 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|+|+|.+|+|||||+..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999998764
No 432
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.01 E-value=0.089 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..-|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998753
No 433
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.99 E-value=0.09 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
+...|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999998765
No 434
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.95 E-value=0.091 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..-|+|+|.+|+|||||...+....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4568999999999999999998754
No 435
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.95 E-value=0.099 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999998654
No 436
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.94 E-value=0.091 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999987653
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.94 E-value=0.093 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|+|+|..|+|||||...+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998643
No 438
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.93 E-value=0.093 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|+|+.|+|||||.+.+.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999998865
No 439
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.092 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|+|+|..|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998654
No 440
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.92 E-value=0.085 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3789999999999999998754
No 441
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.90 E-value=0.14 Score=51.21 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+..+|.|.|++|+||||+|+.+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999887653
No 442
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.11 Score=43.72 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998865
No 443
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.89 E-value=0.088 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|..|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999987653
No 444
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.87 E-value=0.094 Score=44.15 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.--|+|+|..|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3458899999999999999998763
No 445
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.84 E-value=0.097 Score=43.90 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|.|+|..|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999998764
No 446
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.84 E-value=0.22 Score=46.94 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCccEEEEEc-CCCCcHHHHHHHHHHHhhhcCccceEEEEEec
Q 044858 170 RNFNMIGVYG-MGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 211 (426)
Q Consensus 170 ~~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 211 (426)
++.++|+|+| -||+||||+|..+....... -..++.+...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 3567888875 99999999999998776543 2245666654
No 447
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.83 E-value=0.097 Score=43.98 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|.|+|.+|+|||||...+....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998754
No 448
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.83 E-value=7.9 Score=35.81 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
....|+|+|.+|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987643
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.82 E-value=0.1 Score=43.11 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-+.|.|++|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45889999999999999998874
No 450
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.79 E-value=0.086 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346889999999999999877664
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.75 E-value=0.12 Score=41.71 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..+.+|+|+.|+|||||...++--
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988754
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.74 E-value=0.092 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|..|+|||||...+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998654
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.74 E-value=0.099 Score=43.98 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999764
No 454
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.73 E-value=0.17 Score=47.11 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=24.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+..+|+|+|.+|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999976654
No 455
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.73 E-value=0.28 Score=45.37 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=24.1
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 169 NRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 169 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
++...++.+.|.||+||||+|..+......
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~ 45 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSK 45 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHH
Confidence 334567778999999999999999877654
No 456
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.73 E-value=0.093 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999987653
No 457
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.70 E-value=0.15 Score=46.50 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=25.6
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 161 KGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 161 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+++...+.. .+++|+|+.|+|||||.+.+.....
T Consensus 161 ~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 161 EELKEYLKG---KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHhcC---CeEEEECCCCCcHHHHHHHhccccc
Confidence 445554432 5789999999999999999976543
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.68 E-value=0.1 Score=43.61 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998764
No 459
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.68 E-value=0.14 Score=43.56 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=51.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHH-HHHHhCCCcccc------------CcH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE-IAEKLGLKIDQE------------SES 237 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~-i~~~l~~~~~~~------------~~~ 237 (426)
...+|+|+|+.|+||+|+|..+.+.... .... ..++.+.+++ .+...+.+.+.. ...
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~----~~~~------vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~ 79 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGA----DVCA------VLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMI 79 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCT----TTEE------EECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCC----CCce------EEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHH
Confidence 4568999999999999999998764421 1111 1245666663 455555443221 000
Q ss_pred HHHHHHHHH--------Hh-cCCeEEEEEeCCCCccChhhhcCCC
Q 044858 238 VRAWRLLEQ--------LK-KETKILIILDDIWGSLDLEAIGIPL 273 (426)
Q Consensus 238 ~~~~~l~~~--------l~-~~k~~LlVlDdv~~~~~~~~l~~~l 273 (426)
.....+++. .. .-..-.+|+||+.+..+.+.+...+
T Consensus 80 ~~g~~~R~~d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~ 124 (202)
T 3ch4_B 80 RWGEEKRQADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAY 124 (202)
T ss_dssp HHHHHHHHHCTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhC
Confidence 011111111 11 1112278999999888777665443
No 460
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.68 E-value=0.11 Score=50.72 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
...+|.++|++|+||||+++.+.....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.63 E-value=0.099 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGR 194 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~ 194 (426)
.-|+|+|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999873
No 462
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.63 E-value=0.09 Score=44.56 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|+|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998754
No 463
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.62 E-value=0.091 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999998754
No 464
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.60 E-value=0.089 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
-.+++|+|+.|+|||||++.+..-..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCccc
Confidence 35799999999999999999987543
No 465
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.59 E-value=0.11 Score=44.00 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
...-|+|+|..|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998754
No 466
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.57 E-value=0.076 Score=49.24 Aligned_cols=105 Identities=23% Similarity=0.199 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCcCHHHHHHHHHHHhCCCccccCcHHHHHHHHHHHhcCCe
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDQESESVRAWRLLEQLKKETK 252 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 252 (426)
.+++|+|+.|+|||||++.+....... ...+.+.-......... + +.++.-.. ........+...+. .++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~-~---~~i~~~~g--gg~~~r~~la~aL~-~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHH-K---NYTQLFFG--GNITSADCLKSCLR-MRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSC-S---SEEEEECB--TTBCHHHHHHHHTT-SCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccc-h---hEEEEEeC--CChhHHHHHHHHhh-hCC
Confidence 479999999999999999998765432 23444432211110000 0 00000000 11112233444454 367
Q ss_pred EEEEEeCCCCccChhhhcCCCCCCCCCeEEEEeecchh
Q 044858 253 ILIILDDIWGSLDLEAIGIPLADDNGGCKVLLTARSQD 290 (426)
Q Consensus 253 ~LlVlDdv~~~~~~~~l~~~l~~~~~~s~iivTtr~~~ 290 (426)
=+|++|++.+.+.++.+.. +.. .+..+|+||....
T Consensus 242 ~ilildE~~~~e~~~~l~~-~~~--g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYNV-LCS--GHKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCSTHHHHHHHH-HHT--TCCCEEEEEECSS
T ss_pred CEEEEcCCChHHHHHHHHH-Hhc--CCCEEEEEEcccH
Confidence 7899999987544443322 211 1223677776554
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.1 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998653
No 468
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.55 E-value=0.34 Score=45.23 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+...++...|.||+||||+|..+.....
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3345677789999999999999887665
No 469
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.54 E-value=0.31 Score=44.88 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
..++...|.||+||||+|..+......
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~ 40 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMAR 40 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 356778899999999999998877654
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.53 E-value=0.11 Score=44.18 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999987643
No 471
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.47 E-value=0.11 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999865
No 472
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.46 E-value=0.29 Score=49.24 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEec
Q 044858 170 RNFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVS 211 (426)
Q Consensus 170 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 211 (426)
+..+++.+.|.||+||||+|..+.......+ ..+..|+..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G--~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQG--KRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCC--CcEEEEECC
Confidence 4567889999999999999999987765432 234555544
No 473
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.39 E-value=0.09 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|.|+|..|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
No 474
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.32 E-value=0.1 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|+|+|.+|+|||||...+...
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 475
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.30 E-value=0.12 Score=44.10 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 476
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.30 E-value=0.11 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.+++|+|++|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 578999999999999999988543
No 477
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.29 E-value=0.31 Score=45.50 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
...++.+.|.||+||||+|..+......
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 3456677899999999999998877654
No 478
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.29 E-value=0.13 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
+..+|.|.|+.|+||||+|+.+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999988763
No 479
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.28 E-value=0.12 Score=45.30 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 44578999999999999999988643
No 480
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.26 E-value=0.12 Score=43.44 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
....|+|+|..|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999987643
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.25 E-value=0.12 Score=43.35 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|.|+|..|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
No 482
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.23 E-value=0.088 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|.|+|..|+|||||...+....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999987543
No 483
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.17 E-value=0.1 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 044858 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 174 vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.++|+|+.|+|||||.+.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999998754
No 484
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.14 E-value=0.13 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998765
No 485
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.13 E-value=0.11 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999998764
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.12 E-value=0.12 Score=43.73 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
..-|.|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 346899999999999999998754
No 487
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.10 E-value=0.13 Score=43.97 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
--|+|+|.+|+|||||+..+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998864
No 488
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.09 E-value=0.27 Score=48.84 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHh--ccCCccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 155 SRKSTLKGILDAL--SNRNFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 155 gR~~~~~~l~~~l--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
.|.+....+.+.. ......+|.+.|+.|+||||+|+.+......
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3444444444444 1234568999999999999999999887653
No 489
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.07 E-value=0.13 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999988643
No 490
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.06 E-value=0.13 Score=43.84 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468899999999999999988543
No 491
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.06 E-value=0.16 Score=44.04 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 172 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
..+|.|.|+.|+||||+++.+.....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998765
No 492
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.01 E-value=0.12 Score=43.13 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCccceEEEEEecCCc
Q 044858 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 214 (426)
Q Consensus 175 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 214 (426)
+.|+|.+|+||||+|.++... . ..++++.-+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCCC
Confidence 689999999999999998855 1 124555554443
No 493
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.00 E-value=0.072 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=9.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.-|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999988754
No 494
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.99 E-value=0.13 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
--|.|+|.+|+|||||...+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999987653
No 495
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.88 E-value=0.13 Score=49.55 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 198 (426)
+-..++|+|+.|+|||||++.+......
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3467999999999999999999987643
No 496
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.86 E-value=1.7 Score=42.04 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=55.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCChHHHhHHHHHHHHHHHHHHHhhhcCCcceecccCCCcccc
Q 044858 64 IQQPVEEWLITVDEAINEVETLIADKEKSNNRCLKGLCPNLKTRYQLSKKAEREANAIVGLHEKGRFDSVSFRTIPEETW 143 (426)
Q Consensus 64 ~~~~~~~Wl~~l~~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~r~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (426)
....+..|..++.++.-.+|-.+|.-. .- ....+..+..++..+.+.+.++....
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e-d~---------~~~~~~~~~~~i~~l~~~l~~~~~~~--------------- 215 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE-DL---------PPLDDEAIISDIENIAAEISQLLATK--------------- 215 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS-SS---------CCCCTTTHHHHHHHHHHHHHHHTTTH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-cC---------ChhhHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 467788899999999888888887322 10 01122345566666666666652210
Q ss_pred ccccCCcccccchHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 144 LKSTQDFMHFESRKSTLKGILDALSNRNFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 144 ~~~~~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
...+... ++. .|+|+|.+|+|||||...+....
T Consensus 216 ---------------~~~~~~r----~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 216 ---------------DKGELLR----TGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ---------------HHHHHHH----HCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ---------------hhhhhhc----CCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 0011111 122 38999999999999999988753
No 497
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.84 E-value=0.087 Score=44.13 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
.-|+|+|..|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999988664
No 498
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.83 E-value=0.14 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~~~ 197 (426)
.+++|+|+.|+|||||.+.+..-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7899999999999999999986543
No 499
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.70 E-value=0.94 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.279 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 044858 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (426)
Q Consensus 173 ~vi~I~G~~GiGKTtLa~~v~~~ 195 (426)
.++.|+|+.|+||||++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999976666443
No 500
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.63 E-value=0.097 Score=45.06 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 044858 171 NFNMIGVYGMGGIGKTTLVKEVGRQA 196 (426)
Q Consensus 171 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 196 (426)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
Done!