BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044860
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 102/206 (49%), Gaps = 3/206 (1%)
Query: 58 LNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIP-SAIFTTYTLKYVSFCRNQLSGA 116
L++SG + G +P G +P + LK + N+ SG
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 117 FPSFIFNKS-SLQHLDFSFNTLSGEIPANICSNLP-FLEYISLSQNMFHGGIPSTLSNCT 174
P + N S SL LD S N SG I N+C N L+ + L N F G IP TLSNC+
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 175 YLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKL 234
L L LS N G IP +G+L+KL++L L N L GEIP+E + LE + L N L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 235 QGEIPQELGNLSRLEILQLSDNFLTG 260
GEIP L N + L + LS+N LTG
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTG 501
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM 161
TL+ + N +G P + N S L L SFN LSG IP+++ S L L + L NM
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 450
Query: 162 FHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNL 221
G IP L L+ L L ND G IP + N T L + L N L GEIP+ G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 222 AELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
L ++ L N G IP ELG+ L L L+ N G
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G IP + L + N LSG PS + + S L+ L N L GEIP + +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 463
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
LE + L N G IPS LSNCT L +SLS N G IPK IG L L L L N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
G IP E G+ L + L N G IP + S +++ NF+ G
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAG 569
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 89/222 (40%), Gaps = 54/222 (24%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G AI T LK ++ NQ G P SLQ+L + N +GEIP +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 151 FLEYISLSQNMFHGGIP-------------------------STLSNCTYLQKLSLSLND 185
L + LS N F+G +P TL L+ L LS N+
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 186 FWGAIPKEIGNLTK---------------------------LKELYLGRNGLLGEIPREF 218
F G +P+ + NL+ L+ELYL NG G+IP
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 219 GNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
N +EL + L N L G IP LG+LS+L L+L N L G
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 95/242 (39%), Gaps = 45/242 (18%)
Query: 64 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFN 123
+LTG IP G IP I L + N SG P+ + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 124 KSSLQHLDFSFNTLSGEIPA-------NICSNL----------------------PFLEY 154
SL LD + N +G IPA I +N LE+
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 155 ----------------ISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLT 198
+++ ++ G T N + L +S N G IPKEIG++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 199 KLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
L L LG N + G IP E G+L L ++ L +NKL G IPQ + L+ L + LS+N L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 259 TG 260
+G
Sbjct: 714 SG 715
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 108/293 (36%), Gaps = 67/293 (22%)
Query: 26 PTNFFAKNWNTSTPVCNWTGVTCDVHSHKVAVLNVSGLNLT---GTIPXXXXXXXXXXXX 82
P +W+++ C + GVTC KV +++S L +
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 83 XXXXXXXXGSIPSAIFTTYTLKYVSFCRNQLSGA------------------------FP 118
GS+ S + +L + RN LSG FP
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 119 SFI---FNKSSLQHLDFSFNT---------------------------LSGEIPANICSN 148
+ +SL+ LD S N+ +SG++ + C N
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
L FL+ +S N F GIP L +C+ LQ L +S N G + I T+LK L + N
Sbjct: 199 LEFLD---VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQEL-GNLSRLEILQLSDNFLTG 260
+G IP L L+ +SL NK GEIP L G L L LS N G
Sbjct: 255 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 102 TLKYVSFCRNQLSGA-FPSFIFNKS--SLQHLDFSFNTLSGEIPANICSNLPFLE----- 153
+L+ + N +SGA ++ + L+HL S N +SG++ + C NL FL+
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 208
Query: 154 ---------------YISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLT 198
++ +S N G +S CT L+ L++S N F G IP L
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LK 266
Query: 199 KLKELYLGRNGLLGEIPREF-GNLAELELMSLPANKLQGEIPQELG 243
L+ L L N GEIP G L + L N G +P G
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 102/206 (49%), Gaps = 3/206 (1%)
Query: 58 LNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIP-SAIFTTYTLKYVSFCRNQLSGA 116
L++SG + G +P G +P + LK + N+ SG
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 117 FPSFIFNKS-SLQHLDFSFNTLSGEIPANICSNLP-FLEYISLSQNMFHGGIPSTLSNCT 174
P + N S SL LD S N SG I N+C N L+ + L N F G IP TLSNC+
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 175 YLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKL 234
L L LS N G IP +G+L+KL++L L N L GEIP+E + LE + L N L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 235 QGEIPQELGNLSRLEILQLSDNFLTG 260
GEIP L N + L + LS+N LTG
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTG 504
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM 161
TL+ + N +G P + N S L L SFN LSG IP+++ S L L + L NM
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM 453
Query: 162 FHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNL 221
G IP L L+ L L ND G IP + N T L + L N L GEIP+ G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 222 AELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
L ++ L N G IP ELG+ L L L+ N G
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G IP + L + N LSG PS + + S L+ L N L GEIP + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 466
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
LE + L N G IPS LSNCT L +SLS N G IPK IG L L L L N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
G IP E G+ L + L N G IP + S +++ NF+ G
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAG 572
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 89/222 (40%), Gaps = 54/222 (24%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G AI T LK ++ NQ G P SLQ+L + N +GEIP +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 151 FLEYISLSQNMFHGGIP-------------------------STLSNCTYLQKLSLSLND 185
L + LS N F+G +P TL L+ L LS N+
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 186 FWGAIPKEIGNLTK---------------------------LKELYLGRNGLLGEIPREF 218
F G +P+ + NL+ L+ELYL NG G+IP
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 219 GNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
N +EL + L N L G IP LG+LS+L L+L N L G
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 95/242 (39%), Gaps = 45/242 (18%)
Query: 64 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFN 123
+LTG IP G IP I L + N SG P+ + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 124 KSSLQHLDFSFNTLSGEIPA-------NICSNL----------------------PFLEY 154
SL LD + N +G IPA I +N LE+
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 155 ----------------ISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLT 198
+++ ++ G T N + L +S N G IPKEIG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 199 KLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
L L LG N + G IP E G+L L ++ L +NKL G IPQ + L+ L + LS+N L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 259 TG 260
+G
Sbjct: 717 SG 718
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 108/293 (36%), Gaps = 67/293 (22%)
Query: 26 PTNFFAKNWNTSTPVCNWTGVTCDVHSHKVAVLNVSGLNLT---GTIPXXXXXXXXXXXX 82
P +W+++ C + GVTC KV +++S L +
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 83 XXXXXXXXGSIPSAIFTTYTLKYVSFCRNQLSGA------------------------FP 118
GS+ S + +L + RN LSG FP
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 119 SFI---FNKSSLQHLDFSFNT---------------------------LSGEIPANICSN 148
+ +SL+ LD S N+ +SG++ + C N
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
L FL+ +S N F GIP L +C+ LQ L +S N G + I T+LK L + N
Sbjct: 202 LEFLD---VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQEL-GNLSRLEILQLSDNFLTG 260
+G IP L L+ +SL NK GEIP L G L L LS N G
Sbjct: 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 102 TLKYVSFCRNQLSGA-FPSFIFNKS--SLQHLDFSFNTLSGEIPANICSNLPFLE----- 153
+L+ + N +SGA ++ + L+HL S N +SG++ + C NL FL+
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 154 ---------------YISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLT 198
++ +S N G +S CT L+ L++S N F G IP L
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LK 269
Query: 199 KLKELYLGRNGLLGEIPREF-GNLAELELMSLPANKLQGEIPQELG 243
L+ L L N GEIP G L + L N G +P G
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 123/281 (43%), Gaps = 36/281 (12%)
Query: 11 DRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDV--HSHKVAVLNVSGLNLT 66
D+ ALL +K + +PT +W +T CN W GV CD +++V L++SGLNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 67 GTIPXXXXXXXXXXX---XXXXXXXXXGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFN 123
P G IP AI L Y+ +SGA P F+
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 124 KSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYL-QKLSLS 182
+L LDFS+N LSG +P +I S+LP L I+ N G IP + + + L +++S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 183 LNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFG-----------------NLAELE 225
N G IP NL L + L RN L G+ FG +L ++
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 226 L------MSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
L + L N++ G +PQ L L L L +S N L G
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 92 SIPSAIFTTYT-LKYVSFCRNQLSGAFPSFIFNK-SSLQHLDFSFNTLSGEIPANICSNL 149
S+PS F T L+ + N+L P+ IF + +L+ L + N L +P + L
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQL 108
Query: 150 PFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI-GNLTKLKELYLGRN 208
L + L +N P + T L LSL N+ ++PK + LT LKEL L N
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL-YN 166
Query: 209 GLLGEIPR-EFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDN 256
L +P F L EL+ + L N+L+ +L +L++LQL +N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 92 SIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNK-SSLQHLDFSFNTLSGEIPANICSNLP 150
+IPS I K + N+LS + PS F++ + L+ L + N L +PA I L
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
LE + ++ N L +L L N P+ +LTKL L LG N L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
F L L+ + L N+L+ L+ L+ L+L +N L
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 91 GSIPSAIFTTYT-LKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSG--EIPANICS 147
I S F +T L+ + L G PS + + L+ L S N +I A +
Sbjct: 264 SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISA---A 319
Query: 148 NLPFLEYISLSQNM--FHGGIPSTLSNCTYLQKLSLSLNDFWGA--IPKEIGNLTKLKEL 203
N P L ++ + N+ H G+ L LQ L LS ND + ++ NL+ L+ L
Sbjct: 320 NFPSLTHLYIRGNVKKLHLGV-GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Query: 204 YLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQE-LGNLSRLEILQLSDNFL 258
L N LG + F +LEL+ L +L PQ NL L++L L+ FL
Sbjct: 379 NLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 127 LQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDF 186
L+ LD +F L P + NL FL+ ++L+ L+ L+ L+L N F
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 187 W-GAIPKE--IGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELG 243
G I K + + L+ L L GLL + F +L ++ + L N L + L
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLS 518
Query: 244 NL 245
+L
Sbjct: 519 HL 520
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 110 RNQLSGAFPSFIFNK--SSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIP 167
RN L F + K SSL+ LD S N+L+ C+ + ++LS NM G +
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445
Query: 168 STLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELM 227
L + L N+ +IPK++ +L L+EL + N L F L L+ +
Sbjct: 446 RCLPPKVKVLDLH---NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502
Query: 228 SLPANKLQGEIP 239
L N P
Sbjct: 503 WLHDNPWDCTCP 514
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 152 LEYISLSQNMFHGGIPSTLSNC--TYLQKLSLSLNDFWGAIP--KEIGNLTKL 200
LEY+ +S N +S C L+ L LS NDF +P KE GNLTKL
Sbjct: 102 LEYLDVSHNRLQN-----ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKL 148
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 200 LKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259
L LYL N L E+P E NL+ L ++ L N+L +P ELG+ +L+ DN +T
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 166 IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELE 225
I + + +L +L L+ N +P EI NL+ L+ L L N L +P E G+ +L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 226 LMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
N + +P E GNL L+ L + N L
Sbjct: 297 YFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 93 IPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFL 152
IP + + T+ ++ NQL P+ S L LD FN++S P +C LP L
Sbjct: 19 IPDDLPSNITV--LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLL 75
Query: 153 EYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
+ ++L N T CT L +L L N N L +L L NGL
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 125 SSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLN 184
+ L L+ +N L + A + +L L + L+ N + T L KL L N
Sbjct: 59 TKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 185 DFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN 244
LTKLKEL L N L F L L+ +SL N+LQ +P G
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPH--GA 174
Query: 245 LSRLEILQ 252
RL LQ
Sbjct: 175 FDRLGKLQ 182
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI-GNLTKLKELYLGR 207
L L +++L N + T L L L+ N+ ++P + +LT+L +LYLG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 208 NGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
N L F L +L+ + L N+LQ L+ L+ L LS N L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 91 GSIPSAIFTTYT-LKYVSFCRNQLSGAFPSFIFNK-SSLQHLDFSFNTLSGEIPANICSN 148
S+P +F T L + NQL + PS +F++ + L+ L + N L IPA
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDF 186
L L+ +SLS N LQ ++L N F
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 4/128 (3%)
Query: 125 SSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLN 184
+ L L+ +N L + A + +L L + L+ N + T L KL L N
Sbjct: 59 TKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 185 DFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN 244
LTKLKEL L N L F L L+ +SL N+LQ +P G
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPH--GA 174
Query: 245 LSRLEILQ 252
RL LQ
Sbjct: 175 FDRLGKLQ 182
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI-GNLTKLKELYLGR 207
L L +++L N + T L L L+ N+ ++P + +LT+L +LYLG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 208 NGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
N L F L +L+ + L N+LQ L+ L+ L LS N L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 91 GSIPSAIFTTYT-LKYVSFCRNQLSGAFPSFIFNK-SSLQHLDFSFNTLSGEIPANICSN 148
S+P +F T L + NQL + PS +F++ + L+ L + N L IPA
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDF 186
L L+ +SLS N LQ ++L N F
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 95 SAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEY 154
SA+ +L+ +SF NQ++ P + N ++L+ LD S N +S ++ + L LE
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 155 ISLSQNMFHGGIP--------------------STLSNCTYLQKLSLSLNDFWGAIPKEI 194
+ + N P TL++ T L L L+ N P +
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 195 GNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQL 253
LTKL EL LG N + P L L + L N+L+ P + NL L L L
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 95 SAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEY 154
SA+ +L+ +SF NQ++ P + N ++L+ LD S N +S ++ + L LE
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 155 ISLSQNMFHGGIP--------------------STLSNCTYLQKLSLSLNDFWGAIPKEI 194
+ + N P TL++ T L L L+ N P +
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 195 GNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQL 253
LTKL EL LG N + P L L + L N+L+ P + NL L L L
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 93 IPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNK-SSLQHLDFSFNTLSGEIPANICSNLPF 151
+P + T T+ ++ NQL P+ F + S L LD FNT+S P +C LP
Sbjct: 19 VPDDLPTNITV--LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 74
Query: 152 LEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
L+ ++L N T + CT L +L L N L L L NGL
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 93 IPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNK-SSLQHLDFSFNTLSGEIPANICSNLPF 151
+P + T T+ ++ NQL P+ F + S L LD FNT+S P +C LP
Sbjct: 29 VPDDLPTNITV--LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 84
Query: 152 LEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
L+ ++L N T + CT L +L L N L L L NGL
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%)
Query: 166 IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELE 225
+P LSN +L + LS N + N+T+L L L N L PR F L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 226 LMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
L+SL N + +LS L L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 93 IPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNK-SSLQHLDFSFNTLSGEIPANICSNLPF 151
+P + T T+ ++ NQL P+ F + S L LD FNT+S P +C LP
Sbjct: 24 VPDDLPTNITV--LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPM 79
Query: 152 LEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
L+ ++L N T + CT L +L L N L L L NGL
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 65/169 (38%), Gaps = 23/169 (13%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
+PS + TLK + N+ N SL HL NT E+ NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210
L + LS H I + S+C LQ + NL+ L+ L L N
Sbjct: 351 NLRELDLS----HDDIET--SDCCNLQ----------------LRNLSHLQSLNLSYNEP 388
Query: 211 LGEIPREFGNLAELELMSLPANKLQGEIPQE-LGNLSRLEILQLSDNFL 258
L F +LEL+ L +L+ + Q NL L++L LS + L
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 95 SAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEY 154
SA+ +L+ ++F NQ++ P + N ++L+ LD S N +S ++ + L LE
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLES 199
Query: 155 ISLSQNMFHGGIP--------------------STLSNCTYLQKLSLSLNDFWGAIPKEI 194
+ + N P TL++ T L L L+ N P +
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 195 GNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQL 253
LTKL EL LG N + P L L + L N+L+ P + NL L L L
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 209 GLLG-EIPREFGNLAELELMSLPA 231
+ R NL LEL S A
Sbjct: 187 HISDLRALRGLKNLDVLELFSQEA 210
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G + F T +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW-GAIPKEIGNLTKLKELYLGRNG 209
L Y+ +S + + L+ L ++ N F +P L L L L +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 210 LLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQ 252
L P F +L+ L+++++ +N+L+ +P G RL LQ
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKS-VPD--GIFDRLTSLQ 521
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%)
Query: 95 SAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEY 154
S + L Y+ AF SSL+ L + N+ +I + L L +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 155 ISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEI 214
+ LSQ P+ ++ + LQ L+++ N LT L++++L N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 215 PR 216
PR
Sbjct: 535 PR 536
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 23/105 (21%)
Query: 174 TYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL--LGEIP-----REFGN------ 220
T L++L LS N P + +LTKL+EL + RN L L IP R F +
Sbjct: 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD 120
Query: 221 ------LAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259
L LE++S+ NKL+ + LG LS+LE+L L N +T
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 109 CRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPS 168
C +Q + P+ I +++ +LD N+L +P + L L + L N
Sbjct: 14 CYSQGRTSVPTGIPAQTT--YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNG 70
Query: 169 TLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMS 228
+ T L L+LS N LT+LKEL L N L F L +L+ +
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 229 LPANKLQGEIPQELGNLSRLEILQLSDN 256
L N+L+ L+ L+ + L DN
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 152 LEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211
+E S + GIP+ TYL + SL + E LT L +LYLG N L
Sbjct: 12 VECYSQGRTSVPTGIPA---QTTYLDLETNSLKSLPNGVFDE---LTSLTQLYLGGNKLQ 65
Query: 212 GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
F L L ++L N+LQ L++L+ L L+ N L
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP + Y++L N H S L T L L L+ N LT LKEL L N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQ----ELGNLSRLEI 250
L F L L + L N+LQ +P+ +L NL+RL++
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDL 164
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 41/107 (38%)
Query: 152 LEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211
L Y+ L+ N T L++L L N LT L LYL N L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 212 GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
F L L + L N+LQ L++L+ L L+DN L
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 145 ICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI-GNLTKLKEL 203
+ S+ LE ++L+QN + + T+L KL+LS N F G+I + NL KL+ L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL 352
Query: 204 YLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQ 252
L N + + F L L+ ++L N+L+ +P G RL LQ
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD--GIFDRLTSLQ 398
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM 161
TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+ N
Sbjct: 177 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 231
Query: 162 FHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNL 221
TL++ T L L L+ N P + LTKL EL LG N + P L
Sbjct: 232 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 285
Query: 222 AELELMSLPANKLQGEIPQELGNLSRLEILQL 253
L + L N+L+ P + NL L L L
Sbjct: 286 TALTNLELNENQLEDISP--ISNLKNLTYLTL 315
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM 161
TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+ N
Sbjct: 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 232
Query: 162 FHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNL 221
TL++ T L L L+ N P + LTKL EL LG N + P L
Sbjct: 233 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286
Query: 222 AELELMSLPANKLQGEIPQELGNLSRLEILQL 253
L + L N+L+ P + NL L L L
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTL 316
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM 161
TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+ N
Sbjct: 173 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 227
Query: 162 FHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNL 221
TL++ T L L L+ N P + LTKL EL LG N + P L
Sbjct: 228 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 222 AELELMSLPANKLQGEIPQELGNLSRLEILQL 253
L + L N+L+ P + NL L L L
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTL 311
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM 161
TL+ + N++S S + ++L+ L + N +S P I +NL + +SL+ N
Sbjct: 173 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 227
Query: 162 FHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNL 221
TL++ T L L L+ N P + LTKL EL LG N + P L
Sbjct: 228 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 222 AELELMSLPANKLQGEIPQELGNLSRLEILQL 253
L + L N+L+ P + NL L L L
Sbjct: 282 TALTNLELNENQLEDISP--ISNLKNLTYLTL 311
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G + F T +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW-GAIPKEIGNLTKLKELYLGRNG 209
L Y+ +S + + L+ L ++ N F +P L L L L +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 210 LLGEIPREFGNLAELELMSLPAN 232
L P F +L+ L+++++ N
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G + F T +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 445
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW-GAIPKEIGNLTKLKELYLGRNG 209
L Y+ +S + + L+ L ++ N F +P L L L L +
Sbjct: 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505
Query: 210 LLGEIPREFGNLAELELMSLPAN 232
L P F +L+ L+++++ N
Sbjct: 506 LEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 139 GEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI-GNL 197
+PA I +N + + L N P + L++L L N GA+P + +L
Sbjct: 32 ASVPAGIPTNA---QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 198 TKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNF 257
T+L L LG N L F L L+ + + NKL E+P+ + L+ L L L N
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 258 L 258
L
Sbjct: 147 L 147
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 163 HGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPR-EFGNL 221
H +P+ + T Q L L N P +L LKELYLG N LG +P F +L
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSL 87
Query: 222 AELELMSLPANKL 234
+L ++ L N+L
Sbjct: 88 TQLTVLDLGTNQL 100
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 194 IGNLTKLKELYLGRNGLLG-EIPREFGNLAELELMSLPANKLQG 236
IG+L LKEL + N + ++P F NL LE + L +NK+Q
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP + Y++L N H S L T L L L+ N LT LKEL L N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQ----ELGNLSRLEI 250
L F L L ++L N+LQ +P+ +L NL+ L++
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDL 164
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 103 LKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMF 162
++Y++ N+L S + ++L +L + N L +P + L L+ + L +N
Sbjct: 65 VRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL 121
Query: 163 HG---GIPSTLSNCTYLQKLSLSLNDFWGAIPKEI-GNLTKLKELYLGRNGLLGEIPREF 218
G+ L+N TYL +L+ N ++PK + LT L EL L N L F
Sbjct: 122 QSLPDGVFDKLTNLTYL---NLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 219 GNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDN 256
L +L+ + L N+L+ L+ L+ + L DN
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 141 IPANICSNLPFLEYISLS-QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTK 199
+P I S+ LE S Q++ HG T L KLSLS N LTK
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 200 LKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQ 252
L LYL N L F L +L+ ++L N+L+ +P G RL LQ
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPD--GIFDRLTSLQ 127
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
Query: 125 SSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLN 184
SS L+ N L +P + L L +SLSQN T L L L N
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 185 DFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN 244
LT+LKEL L N L F L L+ + L N P+ +
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDY 145
Query: 245 LSR 247
LSR
Sbjct: 146 LSR 148
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 209 GLLGEIPREFGNLAELELMSL 229
+ R L L+++ L
Sbjct: 184 HISD--LRALAGLKNLDVLEL 202
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 29/177 (16%)
Query: 103 LKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMF 162
L Y++ +++ P I N + L L ++N + P ++L L Y + N
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQI 211
Query: 163 HGGIPSTLSNCTYLQKLSLSLNDFWGAIPK---------EIG-----------NLTKLKE 202
P ++N T L L + N P EIG +LTKLK
Sbjct: 212 TDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKX 269
Query: 203 LYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259
L +G N + +I NL++L + L N+L E + +G L+ L L LS N +T
Sbjct: 270 LNVGSNQI-SDISV-LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 137 LSGEIPANI--CSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI 194
++GE A+I L LEY++L+ N P LSN L L + N +
Sbjct: 51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SAL 106
Query: 195 GNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPAN 232
NLT L+ELYL + + P NL + ++L AN
Sbjct: 107 QNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGAN 142
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 153 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 209 GLLGEIPREFGNLAELELMSL 229
+ R L L+++ L
Sbjct: 209 HISDL--RALAGLKNLDVLEL 227
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 209 GLLGEIPREFGNLAELELMSL 229
+ R L L+++ L
Sbjct: 187 HISD--LRALAGLKNLDVLEL 205
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 209 GLLGEIPREFGNLAELELMSL 229
+ R L L+++ L
Sbjct: 189 HISDL--RALAGLKNLDVLEL 207
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 GLLGEIPREFGNLAELELMSL 229
+ R L L+++ L
Sbjct: 207 HI--SDLRALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 GLLGEIPREFGNLAELELMSL 229
+ R L L+++ L
Sbjct: 207 HI--SDLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 GLLGEIPREFGNLAELELMSL 229
+ R L L+++ L
Sbjct: 207 HI--SDLRALAGLKNLDVLEL 225
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 148 NLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGR 207
+LP LE + L N + LS T L LSL N +P + LTKL+ LYL +
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 208 NGLLGEIPREFGNLAELELMSL 229
N + R L L+++ L
Sbjct: 188 NHISDL--RALAGLKNLDVLEL 207
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 111 NQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFH 163
NQL G P+F ++ L L+ ++N ++ EIPAN C +E +S + N
Sbjct: 340 NQLEGKLPAF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 148 NLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGR 207
+LP LE + L N + LS T L LSL N +P + LTKL+ LYL +
Sbjct: 129 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 208 NGLLGEIPREFGNLAELELMSL 229
N + R L L+++ L
Sbjct: 185 NHI--SDLRALAGLKNLDVLEL 204
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP LE + L N + LS T L LSL N +P + LTKL+ LYL +N
Sbjct: 128 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 209 GL 210
+
Sbjct: 184 HI 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 106 VSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGG 165
+ NQL + P +L LD SFN L+ +P L L+ + L N
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 166 IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF 218
P L+ L+KLSL+ ND + L L L L N L IP+ F
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 126 SLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHG-GIPSTLSNCTYLQKLSL-SL 183
SL+HLD S+N LS + ++ L L +++L N + G S S+ T LQ L + ++
Sbjct: 75 SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 133
Query: 184 NDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELE--LMSLPANKLQGEIPQE 241
+ F K+ LT L+EL + + L P+ ++ + ++ + + L EI +
Sbjct: 134 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 193
Query: 242 LGNLSRLEILQLSDNFL 258
+ S +E L+L D L
Sbjct: 194 VT--SSVECLELRDTDL 208
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 155 ISLSQNMFHGGIPSTLS---NCTYLQKLSLSLNDFWGAIPKEIGNLT------------- 198
I +S+N FH +P T YL S ++ G IPK + L
Sbjct: 392 IDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNL 450
Query: 199 -KLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQ 252
+LKELY+ RN L+ +P + L L ++ + N+L+ +P G RL LQ
Sbjct: 451 PQLKELYISRNKLMT-LP-DASLLPMLLVLKISRNQLKS-VPD--GIFDRLTSLQ 500
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 164 GGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAE 223
G PS C+ Q L N ++P I T + L+L N + P F +L
Sbjct: 4 AGCPS---QCSCDQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN 58
Query: 224 LELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258
L+ + +NKL L++L L L+DN L
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF 218
QN+ +P+ + T Q+L L+ N P +L L++LY N L F
Sbjct: 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77
Query: 219 GNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDN 256
L +L + L N L+ NL L + L +N
Sbjct: 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 126 SLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHG-GIPSTLSNCTYLQKLSL-SL 183
SL+HLD S+N LS + ++ L L +++L N + G S S+ T LQ L + ++
Sbjct: 101 SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 184 NDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELE--LMSLPANKLQGEIPQE 241
+ F K+ LT L+EL + + L P+ ++ + ++ + + L EI +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219
Query: 242 LGNLSRLEILQLSDNFL 258
+ S +E L+L D L
Sbjct: 220 VT--SSVECLELRDTDL 234
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP L + LS N +P L L +S N + L +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN-LSRLEILQLSDNFL 258
L P +LE +SL N+L E+P L N L L+ L L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP L + LS N +P L L +S N + L +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN-LSRLEILQLSDNFL 258
L P +LE +SL N+L E+P L N L L+ L L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP L + LS N +P L L +S N + L +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN-LSRLEILQLSDNFL 258
L P +LE +SL N+L E+P L N L L+ L L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRN 208
LP L + LS N +P L L +S N + L +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN-LSRLEILQLSDNFL 258
L P +LE +SL N+L E+P L N L L+ L L +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Query: 91 GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150
G + F T +LKY+ N + +F+ L+HLDF + L ++ +L
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 151 FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW-GAIPKEIGNLTKLKELYLGRNG 209
L Y+ +S + + L+ L ++ N F +P L L L L +
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 210 LLGEIPREFGNLAELELMSLPAN 232
L P F +L+ L+++++ N
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 99 TTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158
T L + NQL + P +L LD SFN L+ +P L L+ + L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 132
Query: 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF 218
N P L+ L+KLSL+ N+ + L L L L N L IP+ F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 110 RNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPST 169
RNQL+G P+ S +Q L N + EI + L L+ ++L N +P +
Sbjct: 63 RNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 170 LSNCTYLQKLSLSLNDF 186
+ L L+L+ N F
Sbjct: 122 FEHLNSLTSLNLASNPF 138
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 99 TTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158
T L + NQL + P +L LD SFN L+ +P L L+ + L
Sbjct: 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 132
Query: 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF 218
N P L+ L+KLSL+ N+ + L L L L N L IP+ F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 149 LPFLEYISLSQNMFHG-GIPSTLSNCTYLQKLSLSLNDFWGAIPKEI-----GNLTKLKE 202
+P L+ + L+QN F T S L++L L N A E+ L+ L+
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 203 LYLGRNGLLGEIPREFGNLAELELMSLPANKL----QGEIPQELGNLSRLEILQLSDN 256
LYL N L P F +L L +SL +N+L ++P + LEIL +S N
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDISRN 536
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 166 IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPR--------- 216
+P T L+ L+L+ N A+P I +L +L+EL + L E+P
Sbjct: 119 LPDTXQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 217 EFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260
E L L+ + L ++ +P + NL L+ L++ ++ L+
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA 220
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 106 VSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGG 165
+ NQL + P +L LD SFN L+ +P L L+ + L N
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139
Query: 166 IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF 218
P L+ L+KLSL+ N+ + L L L L N L IP+ F
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 99 TTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158
T L + NQL + P +L LD SFN L+ +P L L+ + L
Sbjct: 76 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLK 133
Query: 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF 218
N P L+ L+KLSL+ N+ + L L L L N L IP+ F
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,193,902
Number of Sequences: 62578
Number of extensions: 275517
Number of successful extensions: 803
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 184
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)